PeakID (cmd=annotatePeaks.pl S18_S18_SEACR.relaxed.bed hg38 -annStats S18_S18_SEACR.relaxed.log) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type chrX-26 98462197 98462370 154 - chrX:98462225-98462360 NA NA NA NA NA chrX-25 95288411 95288580 157 - chrX:95288422-95288567 NA NA NA NA NA chrX-24 95116557 95116888 229 - chrX:95116729-95116856 NA NA NA NA NA chrX-23 89092767 89093103 218 - chrX:89092818-89092918 NA NA NA NA NA chrX-22 83468101 83468337 151 - chrX:83468117-83468183 NA NA NA NA NA chrX-21 81813566 81813872 174 - chrX:81813774-81813816 NA NA NA NA NA chrX-20 78456182 78456578 228 - chrX:78456209-78456363 NA NA NA NA NA chrX-19 78311617 78311938 162 - chrX:78311708-78311817 NA NA NA NA NA chrX-18 77875229 77875581 181 - chrX:77875323-77875447 NA NA NA NA NA chrX-17 75099016 75099340 271 - chrX:75099158-75099270 NA NA NA NA NA chrX-16 71631896 71632117 190 - chrX:71631993-71632090 NA NA NA NA NA chrX-15 70578256 70578557 228 - chrX:70578416-70578513 NA NA NA NA NA chrX-14 70228822 70229273 269 - chrX:70229002-70229085 NA NA NA NA NA chrX-13 67329964 67330240 272 - chrX:67329965-67330227 NA NA NA NA NA chrX-12 55383772 55384088 262 - chrX:55383866-55384074 NA NA NA NA NA chrX-11 50380923 50381224 297 - chrX:50380924-50381217 NA NA NA NA NA chrX-10 50197855 50198454 300 - chrX:50198099-50198100 NA NA NA NA NA chrX-9 45714509 45714920 310 - chrX:45714671-45714880 NA NA NA NA NA chrX-8 43951164 43951493 264 - chrX:43951183-43951323 NA NA NA NA NA chrX-7 35413465 35413730 196 - chrX:35413597-35413724 NA NA NA NA NA chrX 2958660 2958914 151 - chrX:2958817-2958865 NA NA NA NA NA chrX-6 29022638 29022870 163 - chrX:29022696-29022790 NA NA NA NA NA chrX-5 27736910 27737279 187 - chrX:27737020-27737073 NA NA NA NA NA chrX-4 23395893 23396213 231 - chrX:23395919-23396061 NA NA NA NA NA chrX-3 22013197 22013499 191 - chrX:22013330-22013410 NA NA NA NA NA chrX-35 155438322 155438583 211 - chrX:155438351-155438512 NA NA NA NA NA chrX-34 154496820 154497131 170 - chrX:154497017-154497090 NA NA NA NA NA chrX-33 147292908 147293188 207 - chrX:147292941-147293075 NA NA NA NA NA chrX-32 143280172 143280454 224 - chrX:143280219-143280385 NA NA NA NA NA chrX-31 131947721 131947963 197 - chrX:131947767-131947921 NA NA NA NA NA chrX-2 13148525 13148749 157 - chrX:13148528-13148618 NA NA NA NA NA chrX-30 128314060 128314473 174 - chrX:128314333-128314336 NA NA NA NA NA chrX-29 119000119 119000592 261 - chrX:119000143-119000192 NA NA NA NA NA chrX-28 101298656 101298915 195 - chrX:101298694-101298773 NA NA NA NA NA chrX-27 100712833 100713059 164 - chrX:100712925-100713027 NA NA NA NA NA chr9-43 99746078 99746630 250 - chr9:99746270-99746329 NA NA NA NA NA chr9-42 95394535 95394886 262 - chr9:95394552-95394725 NA NA NA NA NA chr9-41 95183722 95184195 395 - chr9:95183793-95184110 NA NA NA NA NA chr9-40 94922333 94922886 249 - chr9:94922505-94922533 NA NA NA NA NA chr9-39 91962172 91962516 202 - chr9:91962312-91962372 NA NA NA NA NA chr9-38 91225148 91225572 224 - chr9:91225336-91225360 NA NA NA NA NA chr9-4 9044467 9044877 257 - chr9:9044671-9044877 NA NA NA NA NA chr9-37 89349121 89349429 157 - chr9:89349288-89349294 NA NA NA NA NA chr9-36 81196202 81196484 155 - chr9:81196309-81196337 NA NA NA NA NA chr9-35 80851499 80851871 257 - chr9:80851511-80851653 NA NA NA NA NA chr9-34 79731542 79731874 178 - chr9:79731579-79731603 NA NA NA NA NA chr9-33 73844551 73844828 170 - chr9:73844636-73844708 NA NA NA NA NA chr9-32 71462490 71463223 459 - chr9:71462753-71462831 NA NA NA NA NA chr9-31 69187173 69187572 198 - chr9:69187420-69187445 NA NA NA NA NA chr9-3 6624059 6624358 219 - chr9:6624119-6624258 NA NA NA NA NA chr9-2 3944264 3944488 153 - chr9:3944349-3944431 NA NA NA NA NA chr9-30 38718058 38718526 282 - chr9:38718137-38718214 NA NA NA NA NA chr9-29 37304922 37305373 341 - chr9:37304939-37305338 NA NA NA NA NA chr9-28 37090127 37090508 209 - chr9:37090191-37090300 NA NA NA NA NA chr9-27 36597366 36597708 252 - chr9:36597463-36597625 NA NA NA NA NA chr9-26 35645415 35645665 227 - chr9:35645494-35645652 NA NA NA NA NA chr9-25 34866837 34867242 234 - chr9:34866989-34867052 NA NA NA NA NA chr9-24 33357520 33357954 225 - chr9:33357888-33357904 NA NA NA NA NA chr9-23 32641657 32642032 196 - chr9:32641690-32641707 NA NA NA NA NA chr9-22 32160669 32161055 272 - chr9:32160732-32160890 NA NA NA NA NA chr9-21 31658505 31658923 244 - chr9:31658564-31658750 NA NA NA NA NA chr9-20 31602675 31602994 220 - chr9:31602771-31602886 NA NA NA NA NA chr9-19 30940767 30941175 205 - chr9:30940976-30940978 NA NA NA NA NA chr9-18 30761516 30762093 374 - chr9:30761920-30761957 NA NA NA NA NA chr9-17 29792326 29792574 220 - chr9:29792360-29792552 NA NA NA NA NA chr9-16 29414282 29414688 223 - chr9:29414475-29414515 NA NA NA NA NA chr9-15 28668041 28668468 241 - chr9:28668165-28668260 NA NA NA NA NA chr9-14 28080118 28080585 376 - chr9:28080281-28080566 NA NA NA NA NA chr9-13 27270239 27270567 178 - chr9:27270381-27270393 NA NA NA NA NA chr9-12 25770110 25770919 410 - chr9:25770198-25770299 NA NA NA NA NA chr9-11 24882380 24882746 220 - chr9:24882546-24882660 NA NA NA NA NA chr9-10 24307632 24307961 258 - chr9:24307876-24307921 NA NA NA NA NA chr9-9 18654110 18654491 318 - chr9:18654196-18654451 NA NA NA NA NA chr9-8 17932387 17932832 228 - chr9:17932567-17932625 NA NA NA NA NA chr9-7 17339131 17339520 178 - chr9:17339282-17339289 NA NA NA NA NA chr9-6 14394169 14394433 224 - chr9:14394242-14394426 NA NA NA NA NA chr9-54 131305299 131305555 191 - chr9:131305375-131305523 NA NA NA NA NA chr9-53 128517439 128517774 180 - chr9:128517655-128517660 NA NA NA NA NA chr9-52 125884265 125884538 177 - chr9:125884306-125884451 NA NA NA NA NA chr9-51 119677303 119677796 254 - chr9:119677579-119677668 NA NA NA NA NA chr9-50 118643347 118643763 264 - chr9:118643523-118643635 NA NA NA NA NA chr9 1161380 1161646 188 - chr9:1161455-1161567 NA NA NA NA NA chr9-5 11342559 11342942 248 - chr9:11342580-11342783 NA NA NA NA NA chr9-49 110804785 110805200 274 - chr9:110804935-110805079 NA NA NA NA NA chr9-48 105882341 105882539 197 - chr9:105882345-105882539 NA NA NA NA NA chr9-47 103958810 103959518 402 - chr9:103958827-103959146 NA NA NA NA NA chr9-46 103709368 103709940 335 - chr9:103709631-103709729 NA NA NA NA NA chr9-45 103282314 103282540 219 - chr9:103282317-103282515 NA NA NA NA NA chr9-44 102316189 102316484 160 - chr9:102316344-102316369 NA NA NA NA NA chr8-80 99546931 99547257 170 - chr8:99547116-99547130 NA NA NA NA NA chr8-79 95409221 95409556 214 - chr8:95409327-95409420 NA NA NA NA NA chr8-78 95061166 95061383 150 - chr8:95061296-95061337 NA NA NA NA NA chr8-77 93163775 93164198 238 - chr8:93163917-93163946 NA NA NA NA NA chr8-76 92540297 92540637 153 - chr8:92540373-92540413 NA NA NA NA NA chr8-75 92184746 92185140 231 - chr8:92184861-92184961 NA NA NA NA NA chr8-74 89259901 89260298 323 - chr8:89259960-89260219 NA NA NA NA NA chr8-73 89247833 89248088 183 - chr8:89247914-89248073 NA NA NA NA NA chr8-72 89153739 89154194 227 - chr8:89154039-89154182 NA NA NA NA NA chr8-71 88955382 88955900 299 - chr8:88955658-88955884 NA NA NA NA NA chr8-70 88469285 88469586 153 - chr8:88469465-88469534 NA NA NA NA NA chr8-69 88219119 88219583 266 - chr8:88219204-88219402 NA NA NA NA NA chr8-68 87691230 87691480 147 - chr8:87691267-87691321 NA NA NA NA NA chr8-67 87635155 87635463 250 - chr8:87635359-87635435 NA NA NA NA NA chr8-66 87603188 87603498 219 - chr8:87603368-87603496 NA NA NA NA NA chr8-65 87177139 87177435 164 - chr8:87177208-87177283 NA NA NA NA NA chr8-64 86449930 86450130 161 - chr8:86449931-86450053 NA NA NA NA NA chr8-63 86003637 86004124 312 - chr8:86003659-86003681 NA NA NA NA NA chr8-62 85613451 85613656 151 - chr8:85613468-85613565 NA NA NA NA NA chr8-61 85443461 85443998 231 - chr8:85443862-85443991 NA NA NA NA NA chr8-60 84206750 84207341 324 - chr8:84206912-84207030 NA NA NA NA NA chr8-59 83631614 83632209 275 - chr8:83632085-83632131 NA NA NA NA NA chr8-58 83428618 83428859 221 - chr8:83428623-83428824 NA NA NA NA NA chr8-57 83415377 83415811 297 - chr8:83415586-83415698 NA NA NA NA NA chr8-56 83124792 83125308 289 - chr8:83124934-83124996 NA NA NA NA NA chr8-55 82702680 82703053 148 - chr8:82702946-82702951 NA NA NA NA NA chr8-54 82635895 82636531 337 - chr8:82636345-82636352 NA NA NA NA NA chr8-53 82293363 82293762 194 - chr8:82293465-82293515 NA NA NA NA NA chr8-52 81974033 81974324 266 - chr8:81974063-81974314 NA NA NA NA NA chr8-51 81781380 81781805 295 - chr8:81781633-81781716 NA NA NA NA NA chr8-50 80165490 80165864 254 - chr8:80165593-80165727 NA NA NA NA NA chr8-49 80002972 80003361 287 - chr8:80003057-80003208 NA NA NA NA NA chr8-48 78811022 78811308 188 - chr8:78811030-78811120 NA NA NA NA NA chr8-47 78774702 78775213 358 - chr8:78774939-78775126 NA NA NA NA NA chr8-46 78555747 78555989 188 - chr8:78555773-78555943 NA NA NA NA NA chr8-45 77541657 77541991 272 - chr8:77541720-77541932 NA NA NA NA NA chr8-44 77125044 77125291 160 - chr8:77125102-77125183 NA NA NA NA NA chr8-43 76378011 76378234 157 - chr8:76378116-76378207 NA NA NA NA NA chr8-42 72519846 72520583 419 - chr8:72520333-72520447 NA NA NA NA NA chr8-41 72006679 72007020 251 - chr8:72006797-72007014 NA NA NA NA NA chr8-40 69150877 69151335 261 - chr8:69151080-69151140 NA NA NA NA NA chr8-39 69085821 69086358 246 - chr8:69086090-69086146 NA NA NA NA NA chr8-38 68053646 68053993 232 - chr8:68053733-68053794 NA NA NA NA NA chr8-37 67589263 67589624 208 - chr8:67589397-67589414 NA NA NA NA NA chr8-36 67454277 67454749 253 - chr8:67454421-67454455 NA NA NA NA NA chr8-35 67218104 67218507 253 - chr8:67218233-67218350 NA NA NA NA NA chr8-34 64890443 64890878 241 - chr8:64890650-64890697 NA NA NA NA NA chr8-33 64365934 64366508 332 - chr8:64366153-64366243 NA NA NA NA NA chr8-32 61294607 61294901 198 - chr8:61294701-61294853 NA NA NA NA NA chr8-31 61265792 61266108 214 - chr8:61265829-61266009 NA NA NA NA NA chr8-30 60752023 60752365 224 - chr8:60752114-60752220 NA NA NA NA NA chr8-29 59148906 59149518 263 - chr8:59149333-59149403 NA NA NA NA NA chr8-28 59096491 59096676 146 - chr8:59096509-59096630 NA NA NA NA NA chr8-27 58893085 58893649 308 - chr8:58893308-58893388 NA NA NA NA NA chr8-26 58275577 58275949 243 - chr8:58275644-58275844 NA NA NA NA NA chr8-25 55641304 55641782 246 - chr8:55641569-55641629 NA NA NA NA NA chr8-24 55291386 55291796 304 - chr8:55291636-55291738 NA NA NA NA NA chr8-23 54359543 54359879 193 - chr8:54359732-54359747 NA NA NA NA NA chr8-2 5276442 5276767 250 - chr8:5276452-5276627 NA NA NA NA NA chr8-22 50851594 50852151 241 - chr8:50851987-50852066 NA NA NA NA NA chr8-21 50697955 50698175 212 - chr8:50697959-50698163 NA NA NA NA NA chr8-20 49356842 49357317 293 - chr8:49357017-49357024 NA NA NA NA NA chr8-19 48732885 48733340 317 - chr8:48733158-48733201 NA NA NA NA NA chr8-18 46298366 46298566 159 - chr8:46298429-46298547 NA NA NA NA NA chr8-17 43917403 43918248 431 - chr8:43917745-43917810 NA NA NA NA NA chr8-16 40379642 40379813 160 - chr8:40379657-40379784 NA NA NA NA NA chr8-15 37324566 37324975 265 - chr8:37324819-37324940 NA NA NA NA NA chr8 3312666 3313051 219 - chr8:3312845-3312924 NA NA NA NA NA chr8-14 32218573 32219076 248 - chr8:32218624-32218753 NA NA NA NA NA chr8-13 31945569 31945887 165 - chr8:31945745-31945859 NA NA NA NA NA chr8-12 31686748 31687083 165 - chr8:31686938-31686973 NA NA NA NA NA chr8-11 30386651 30386931 235 - chr8:30386710-30386810 NA NA NA NA NA chr8-10 30123286 30123579 162 - chr8:30123348-30123379 NA NA NA NA NA chr8-9 28432900 28433416 262 - chr8:28433166-28433213 NA NA NA NA NA chr8-8 27533477 27533791 160 - chr8:27533707-27533713 NA NA NA NA NA chr8-7 26716107 26716528 232 - chr8:26716333-26716450 NA NA NA NA NA chr8-6 25604433 25604841 233 - chr8:25604525-25604583 NA NA NA NA NA chr8-5 20137194 20137502 168 - chr8:20137295-20137349 NA NA NA NA NA chr8-4 19337279 19337594 172 - chr8:19337428-19337457 NA NA NA NA NA chr8-3 16174889 16175289 335 - chr8:16174941-16175211 NA NA NA NA NA chr8-157 144057169 144057560 249 - chr8:144057308-144057415 NA NA NA NA NA chr8-156 142887908 142888135 171 - chr8:142887958-142888073 NA NA NA NA NA chr8-155 142843509 142843693 149 - chr8:142843622-142843684 NA NA NA NA NA chr8-154 140829583 140830187 342 - chr8:140829729-140829809 NA NA NA NA NA chr8-153 140206173 140206584 240 - chr8:140206419-140206438 NA NA NA NA NA chr8-152 138299907 138300153 162 - chr8:138300003-138300105 NA NA NA NA NA chr8-151 138050008 138050398 209 - chr8:138050078-138050106 NA NA NA NA NA chr8-150 137099451 137099668 147 - chr8:137099586-137099663 NA NA NA NA NA chr8-149 136734434 136734825 198 - chr8:136734502-136734559 NA NA NA NA NA chr8-148 136582094 136582369 174 - chr8:136582216-136582289 NA NA NA NA NA chr8-147 135507954 135508204 181 - chr8:135508007-135508165 NA NA NA NA NA chr8-146 134562651 134562968 191 - chr8:134562756-134562779 NA NA NA NA NA chr8-145 133760990 133761252 206 - chr8:133761036-133761186 NA NA NA NA NA chr8-144 132655307 132655905 410 - chr8:132655483-132655636 NA NA NA NA NA chr8-143 132287386 132287913 292 - chr8:132287804-132287861 NA NA NA NA NA chr8-142 131997235 131997848 315 - chr8:131997452-131997521 NA NA NA NA NA chr8-141 131957724 131958391 252 - chr8:131957747-131957836 NA NA NA NA NA chr8-140 131416980 131417250 161 - chr8:131417178-131417189 NA NA NA NA NA chr8-139 130067609 130068037 275 - chr8:130067705-130067817 NA NA NA NA NA chr8-138 129524637 129524859 146 - chr8:129524737-129524807 NA NA NA NA NA chr8-137 128353949 128354208 183 - chr8:128354097-128354204 NA NA NA NA NA chr8-136 128304038 128304327 250 - chr8:128304088-128304321 NA NA NA NA NA chr8-135 128144477 128144926 343 - chr8:128144498-128144858 NA NA NA NA NA chr8-134 127591609 127592067 218 - chr8:127591883-127591929 NA NA NA NA NA chr8-133 127256448 127257053 268 - chr8:127256656-127256673 NA NA NA NA NA chr8-132 126966373 126966773 223 - chr8:126966531-126966549 NA NA NA NA NA chr8-131 126755460 126755838 250 - chr8:126755636-126755692 NA NA NA NA NA chr8-130 126719243 126719572 179 - chr8:126719342-126719371 NA NA NA NA NA chr8-129 126642439 126642892 265 - chr8:126642683-126642760 NA NA NA NA NA chr8-128 126196160 126196387 215 - chr8:126196176-126196387 NA NA NA NA NA chr8-127 126028480 126029047 322 - chr8:126028778-126028800 NA NA NA NA NA chr8-126 125263206 125263533 153 - chr8:125263279-125263374 NA NA NA NA NA chr8-125 125156095 125156383 197 - chr8:125156146-125156172 NA NA NA NA NA chr8-124 125062320 125062758 272 - chr8:125062616-125062656 NA NA NA NA NA chr8-123 124572415 124572732 161 - chr8:124572682-124572687 NA NA NA NA NA chr8-122 123886518 123887025 291 - chr8:123886663-123886779 NA NA NA NA NA chr8-121 123366219 123366829 320 - chr8:123366361-123366438 NA NA NA NA NA chr8-120 123327735 123328023 173 - chr8:123327782-123327840 NA NA NA NA NA chr8-119 123092219 123092796 327 - chr8:123092364-123092425 NA NA NA NA NA chr8-118 122959712 122959987 187 - chr8:122959807-122959921 NA NA NA NA NA chr8-117 122883426 122883911 242 - chr8:122883670-122883671 NA NA NA NA NA chr8-116 122226827 122227325 249 - chr8:122226954-122227021 NA NA NA NA NA chr8-115 122207077 122207413 254 - chr8:122207199-122207371 NA NA NA NA NA chr8-114 121860033 121860707 340 - chr8:121860377-121860495 NA NA NA NA NA chr8-113 121538568 121538914 216 - chr8:121538813-121538899 NA NA NA NA NA chr8-112 121374484 121374798 194 - chr8:121374517-121374649 NA NA NA NA NA chr8-111 121374023 121374377 211 - chr8:121374052-121374120 NA NA NA NA NA chr8-110 121317099 121317470 222 - chr8:121317321-121317395 NA NA NA NA NA chr8-109 121206026 121206317 169 - chr8:121206053-121206158 NA NA NA NA NA chr8-108 121172780 121173117 194 - chr8:121173006-121173083 NA NA NA NA NA chr8-107 120986728 120986993 209 - chr8:120986750-120986903 NA NA NA NA NA chr8-106 120365844 120366383 339 - chr8:120366014-120366173 NA NA NA NA NA chr8-105 120292872 120293271 362 - chr8:120292898-120293201 NA NA NA NA NA chr8-104 119689093 119689389 219 - chr8:119689104-119689246 NA NA NA NA NA chr8-103 119436505 119437005 223 - chr8:119436824-119436862 NA NA NA NA NA chr8-102 117892691 117893095 245 - chr8:117892841-117892909 NA NA NA NA NA chr8-101 117719965 117720397 368 - chr8:117720045-117720311 NA NA NA NA NA chr8-100 117203706 117204028 180 - chr8:117203886-117203924 NA NA NA NA NA chr8-99 116605999 116606848 329 - chr8:116606623-116606640 NA NA NA NA NA chr8-98 116559277 116559551 152 - chr8:116559381-116559423 NA NA NA NA NA chr8-97 115827066 115827425 187 - chr8:115827239-115827254 NA NA NA NA NA chr8-96 112794880 112795318 238 - chr8:112794967-112795005 NA NA NA NA NA chr8-95 111702466 111703096 407 - chr8:111702956-111702962 NA NA NA NA NA chr8-94 111697535 111697804 179 - chr8:111697589-111697678 NA NA NA NA NA chr8-93 110828416 110828756 235 - chr8:110828462-110828474 NA NA NA NA NA chr8-92 110673130 110673355 177 - chr8:110673226-110673355 NA NA NA NA NA chr8-91 110512848 110513185 205 - chr8:110512984-110513057 NA NA NA NA NA chr8-90 109395248 109395641 201 - chr8:109395514-109395523 NA NA NA NA NA chr8-89 106619244 106619618 256 - chr8:106619269-106619468 NA NA NA NA NA chr8-88 106355254 106355467 147 - chr8:106355320-106355401 NA NA NA NA NA chr8-87 105809218 105809619 232 - chr8:105809397-105809460 NA NA NA NA NA chr8-86 105363898 105364496 417 - chr8:105364254-105364433 NA NA NA NA NA chr8-85 105131715 105132215 350 - chr8:105131959-105132159 NA NA NA NA NA chr8-84 104123288 104123555 212 - chr8:104123308-104123465 NA NA NA NA NA chr8-83 103066106 103066348 212 - chr8:103066140-103066322 NA NA NA NA NA chr8-82 102800653 102800971 295 - chr8:102800671-102800943 NA NA NA NA NA chr8-81 100382454 100382757 237 - chr8:100382549-100382720 NA NA NA NA NA chr7-92 95975657 95976070 205 - chr7:95975844-95975855 NA NA NA NA NA chr7-14 9570568 9570961 252 - chr7:9570673-9570784 NA NA NA NA NA chr7-91 94922966 94923765 386 - chr7:94923098-94923228 NA NA NA NA NA chr7-90 92575106 92575311 185 - chr7:92575110-92575275 NA NA NA NA NA chr7-89 91398953 91399215 175 - chr7:91398987-91399133 NA NA NA NA NA chr7-88 91212946 91213262 220 - chr7:91213124-91213201 NA NA NA NA NA chr7-87 88170860 88171284 306 - chr7:88170944-88171132 NA NA NA NA NA chr7-86 87847770 87848086 255 - chr7:87847927-87848057 NA NA NA NA NA chr7-85 87735897 87736244 168 - chr7:87736010-87736051 NA NA NA NA NA chr7-84 87656664 87656908 159 - chr7:87656845-87656855 NA NA NA NA NA chr7-83 87348480 87348812 275 - chr7:87348510-87348766 NA NA NA NA NA chr7-82 82962116 82962537 232 - chr7:82962192-82962241 NA NA NA NA NA chr7-81 80743169 80743528 183 - chr7:80743342-80743349 NA NA NA NA NA chr7-80 79963496 79964154 268 - chr7:79963983-79964055 NA NA NA NA NA chr7-79 78732670 78733071 184 - chr7:78732770-78732815 NA NA NA NA NA chr7-78 77503200 77503455 190 - chr7:77503254-77503379 NA NA NA NA NA chr7-13 7743336 7743812 227 - chr7:7743611-7743763 NA NA NA NA NA chr7-12 7715442 7716031 385 - chr7:7715623-7715827 NA NA NA NA NA chr7-11 7595852 7596149 259 - chr7:7595867-7596088 NA NA NA NA NA chr7-10 7551071 7551483 253 - chr7:7551317-7551411 NA NA NA NA NA chr7-77 72750453 72750738 222 - chr7:72750537-72750738 NA NA NA NA NA chr7-9 7226609 7226948 192 - chr7:7226732-7226777 NA NA NA NA NA chr7-76 71216236 71216499 262 - chr7:71216240-71216499 NA NA NA NA NA chr7-75 70722661 70723040 148 - chr7:70722742-70722759 NA NA NA NA NA chr7-8 7030051 7030628 301 - chr7:7030397-7030415 NA NA NA NA NA chr7-74 70031787 70032298 303 - chr7:70031868-70031963 NA NA NA NA NA chr7-73 65330253 65331109 447 - chr7:65330820-65330945 NA NA NA NA NA chr7-72 63970061 63970500 331 - chr7:63970224-63970376 NA NA NA NA NA chr7-7 5695475 5695979 226 - chr7:5695692-5695776 NA NA NA NA NA chr7-71 55264796 55265165 227 - chr7:55264862-55264947 NA NA NA NA NA chr7-70 55129852 55130153 151 - chr7:55129996-55130001 NA NA NA NA NA chr7-69 54883747 54884088 207 - chr7:54883889-54884025 NA NA NA NA NA chr7-68 54820682 54821147 251 - chr7:54820884-54820929 NA NA NA NA NA chr7-67 53995303 53995563 161 - chr7:53995339-53995443 NA NA NA NA NA chr7-66 53696284 53696956 267 - chr7:53696788-53696920 NA NA NA NA NA chr7-65 53045302 53045755 206 - chr7:53045408-53045461 NA NA NA NA NA chr7-64 52778598 52779217 292 - chr7:52778835-52778860 NA NA NA NA NA chr7-63 51723478 51724022 336 - chr7:51723757-51723885 NA NA NA NA NA chr7-62 51481239 51481559 242 - chr7:51481302-51481476 NA NA NA NA NA chr7-61 50234399 50234670 217 - chr7:50234439-50234574 NA NA NA NA NA chr7-60 50226995 50227278 244 - chr7:50226995-50227122 NA NA NA NA NA chr7-59 49466961 49467462 361 - chr7:49467221-49467442 NA NA NA NA NA chr7-58 49425526 49425945 262 - chr7:49425716-49425821 NA NA NA NA NA chr7-57 48967157 48967650 253 - chr7:48967239-48967251 NA NA NA NA NA chr7-6 4860955 4861213 156 - chr7:4861052-4861096 NA NA NA NA NA chr7-56 47905921 47906350 202 - chr7:47906183-47906228 NA NA NA NA NA chr7-55 46704579 46705047 282 - chr7:46704613-46704709 NA NA NA NA NA chr7-54 46122164 46122501 247 - chr7:46122206-46122267 NA NA NA NA NA chr7-53 45657530 45658222 369 - chr7:45657746-45657792 NA NA NA NA NA chr7-52 45543444 45543757 242 - chr7:45543494-45543665 NA NA NA NA NA chr7-51 45354713 45355165 192 - chr7:45354838-45354860 NA NA NA NA NA chr7-50 43656674 43657094 287 - chr7:43656849-43657003 NA NA NA NA NA chr7-5 4360319 4360753 305 - chr7:4360559-4360735 NA NA NA NA NA chr7-49 41614577 41614801 186 - chr7:41614653-41614801 NA NA NA NA NA chr7-48 40982148 40982503 202 - chr7:40982371-40982420 NA NA NA NA NA chr7-47 40606035 40606359 151 - chr7:40606085-40606145 NA NA NA NA NA chr7-46 39573715 39573925 151 - chr7:39573727-39573819 NA NA NA NA NA chr7-45 38941528 38941854 187 - chr7:38941630-38941678 NA NA NA NA NA chr7-4 3877546 3877858 172 - chr7:3877611-3877643 NA NA NA NA NA chr7-3 3858398 3858682 162 - chr7:3858483-3858523 NA NA NA NA NA chr7-44 38128234 38128557 211 - chr7:38128447-38128546 NA NA NA NA NA chr7-2 3720032 3720689 355 - chr7:3720198-3720199 NA NA NA NA NA chr7-43 36970224 36970693 261 - chr7:36970568-36970629 NA NA NA NA NA chr7-42 36806033 36806320 189 - chr7:36806119-36806204 NA NA NA NA NA chr7-41 36381015 36381405 165 - chr7:36381277-36381291 NA NA NA NA NA chr7-40 36349844 36350403 311 - chr7:36350221-36350315 NA NA NA NA NA chr7-39 35446710 35447248 325 - chr7:35446908-35446990 NA NA NA NA NA chr7-38 35345920 35346281 238 - chr7:35346090-35346162 NA NA NA NA NA chr7-37 34035115 34035640 339 - chr7:34035229-34035238 NA NA NA NA NA chr7-36 33754280 33754546 150 - chr7:33754322-33754356 NA NA NA NA NA chr7-35 33712183 33712370 177 - chr7:33712188-33712355 NA NA NA NA NA chr7 3200926 3201122 148 - chr7:3200926-3201026 NA NA NA NA NA chr7-34 31957957 31958374 162 - chr7:31958277-31958314 NA NA NA NA NA chr7-33 30474011 30474563 363 - chr7:30474345-30474547 NA NA NA NA NA chr7-32 30463360 30463754 197 - chr7:30463520-30463532 NA NA NA NA NA chr7-31 27706651 27706882 158 - chr7:27706726-27706811 NA NA NA NA NA chr7-30 27478288 27478704 243 - chr7:27478464-27478534 NA NA NA NA NA chr7-29 25357170 25357538 195 - chr7:25357280-25357354 NA NA NA NA NA chr7-28 25181255 25181720 342 - chr7:25181341-25181486 NA NA NA NA NA chr7-27 24183798 24184127 247 - chr7:24183874-24184039 NA NA NA NA NA chr7-26 23252056 23252580 305 - chr7:23252401-23252403 NA NA NA NA NA chr7-25 21377881 21378299 269 - chr7:21378101-21378221 NA NA NA NA NA chr7-24 21015287 21015817 359 - chr7:21015447-21015635 NA NA NA NA NA chr7-23 18953293 18953707 191 - chr7:18953420-18953452 NA NA NA NA NA chr7-22 16023290 16023700 236 - chr7:16023609-16023656 NA NA NA NA NA chr7-116 147591929 147592636 359 - chr7:147592176-147592187 NA NA NA NA NA chr7-115 147387901 147388312 267 - chr7:147388138-147388261 NA NA NA NA NA chr7-21 14594085 14594722 292 - chr7:14594208-14594303 NA NA NA NA NA chr7-114 141411364 141411736 185 - chr7:141411597-141411600 NA NA NA NA NA chr7-113 141360206 141360513 214 - chr7:141360300-141360421 NA NA NA NA NA chr7-112 141214862 141215426 261 - chr7:141215013-141215051 NA NA NA NA NA chr7-111 136845527 136845905 283 - chr7:136845586-136845702 NA NA NA NA NA chr7-110 136398504 136398864 205 - chr7:136398628-136398678 NA NA NA NA NA chr7-109 135113587 135113873 215 - chr7:135113613-135113757 NA NA NA NA NA chr7-108 133855016 133855173 151 - chr7:133855022-133855168 NA NA NA NA NA chr7-107 132324638 132324962 215 - chr7:132324780-132324952 NA NA NA NA NA chr7-20 12905288 12905597 235 - chr7:12905365-12905524 NA NA NA NA NA chr7-19 12368294 12368470 150 - chr7:12368295-12368419 NA NA NA NA NA chr7-106 123651491 123651939 229 - chr7:123651656-123651657 NA NA NA NA NA chr7-105 122907726 122908145 155 - chr7:122907804-122907819 NA NA NA NA NA chr7-104 121384397 121384565 148 - chr7:121384437-121384565 NA NA NA NA NA chr7-103 119967223 119967544 203 - chr7:119967403-119967488 NA NA NA NA NA chr7-18 11700215 11700756 298 - chr7:11700585-11700614 NA NA NA NA NA chr7-102 114984400 114985315 404 - chr7:114984958-114984994 NA NA NA NA NA chr7-101 113575050 113575265 159 - chr7:113575078-113575181 NA NA NA NA NA chr7-17 11300024 11300498 277 - chr7:11300130-11300269 NA NA NA NA NA chr7-100 112934591 112934921 252 - chr7:112934634-112934808 NA NA NA NA NA chr7-99 112200225 112200880 297 - chr7:112200685-112200811 NA NA NA NA NA chr7-98 111071532 111071801 172 - chr7:111071613-111071656 NA NA NA NA NA chr7-16 11075510 11075820 226 - chr7:11075597-11075795 NA NA NA NA NA chr7-97 109356243 109356893 265 - chr7:109356503-109356528 NA NA NA NA NA chr7-96 108964340 108964610 152 - chr7:108964356-108964390 NA NA NA NA NA chr7-95 108292473 108292650 157 - chr7:108292550-108292649 NA NA NA NA NA chr7-15 10564531 10564931 209 - chr7:10564689-10564709 NA NA NA NA NA chr7-94 104154978 104155243 172 - chr7:104155135-104155214 NA NA NA NA NA chr7-93 102081556 102082086 214 - chr7:102081961-102082037 NA NA NA NA NA chr6-47 99532994 99533454 216 - chr6:99533258-99533270 NA NA NA NA NA chr6-46 98370054 98370215 155 - chr6:98370063-98370212 NA NA NA NA NA chr6-45 95321028 95321347 196 - chr6:95321172-95321245 NA NA NA NA NA chr6-44 91780635 91781029 245 - chr6:91780737-91780833 NA NA NA NA NA chr6-43 88740385 88740710 171 - chr6:88740543-88740560 NA NA NA NA NA chr6-42 87188182 87188554 202 - chr6:87188238-87188270 NA NA NA NA NA chr6-41 86581439 86581918 242 - chr6:86581713-86581718 NA NA NA NA NA chr6-40 80885075 80885480 255 - chr6:80885139-80885279 NA NA NA NA NA chr6-39 75842785 75843089 198 - chr6:75842829-75842921 NA NA NA NA NA chr6-38 72636007 72636711 334 - chr6:72636288-72636315 NA NA NA NA NA chr6-37 72220813 72221128 147 - chr6:72221034-72221119 NA NA NA NA NA chr6-36 69474270 69474779 399 - chr6:69474515-69474714 NA NA NA NA NA chr6-35 67037034 67037257 187 - chr6:67037150-67037229 NA NA NA NA NA chr6-34 65636057 65636377 252 - chr6:65636074-65636258 NA NA NA NA NA chr6-33 64991570 64991952 224 - chr6:64991635-64991701 NA NA NA NA NA chr6-32 64857963 64858273 199 - chr6:64858080-64858180 NA NA NA NA NA chr6-31 63668526 63668808 146 - chr6:63668662-63668672 NA NA NA NA NA chr6-30 62376837 62377121 200 - chr6:62376942-62377058 NA NA NA NA NA chr6-29 56331269 56331686 252 - chr6:56331529-56331616 NA NA NA NA NA chr6-28 55707827 55708231 230 - chr6:55707845-55707967 NA NA NA NA NA chr6-27 55510902 55511317 264 - chr6:55511073-55511226 NA NA NA NA NA chr6-26 55337545 55337896 266 - chr6:55337569-55337750 NA NA NA NA NA chr6-25 54361146 54361397 152 - chr6:54361289-54361302 NA NA NA NA NA chr6-24 54326883 54327367 232 - chr6:54326990-54327138 NA NA NA NA NA chr6-23 54129665 54130100 183 - chr6:54129978-54130077 NA NA NA NA NA chr6-22 53337305 53337698 190 - chr6:53337385-53337454 NA NA NA NA NA chr6-21 52579184 52579506 181 - chr6:52579329-52579447 NA NA NA NA NA chr6-20 49641442 49641711 167 - chr6:49641546-49641679 NA NA NA NA NA chr6-19 49530498 49530951 283 - chr6:49530722-49530799 NA NA NA NA NA chr6-18 49329871 49330377 345 - chr6:49330050-49330305 NA NA NA NA NA chr6-17 44015093 44015438 213 - chr6:44015200-44015281 NA NA NA NA NA chr6-16 41098705 41099068 235 - chr6:41098827-41098896 NA NA NA NA NA chr6-15 40567304 40567578 153 - chr6:40567460-40567492 NA NA NA NA NA chr6-14 40492570 40492885 166 - chr6:40492767-40492880 NA NA NA NA NA chr6-13 40171128 40171923 390 - chr6:40171566-40171589 NA NA NA NA NA chr6-12 39584667 39585055 287 - chr6:39584864-39584986 NA NA NA NA NA chr6-11 38607811 38608196 164 - chr6:38608084-38608131 NA NA NA NA NA chr6-10 37944060 37944368 159 - chr6:37944188-37944212 NA NA NA NA NA chr6 3783760 3784115 195 - chr6:3783899-3783948 NA NA NA NA NA chr6-9 36727859 36728165 194 - chr6:36727962-36728057 NA NA NA NA NA chr6-8 36552443 36552902 229 - chr6:36552692-36552729 NA NA NA NA NA chr6-7 35669100 35669477 224 - chr6:35669178-35669249 NA NA NA NA NA chr6-6 35561041 35561479 263 - chr6:35561232-35561320 NA NA NA NA NA chr6-5 34872029 34872534 277 - chr6:34872099-34872300 NA NA NA NA NA chr6-4 20547481 20547846 257 - chr6:20547581-20547802 NA NA NA NA NA chr6-3 19701350 19701560 208 - chr6:19701358-19701560 NA NA NA NA NA chr6-105 169514871 169515155 189 - chr6:169514966-169515060 NA NA NA NA NA chr6-104 162370237 162370549 227 - chr6:162370372-162370514 NA NA NA NA NA chr6-103 159714451 159714771 165 - chr6:159714543-159714577 NA NA NA NA NA chr6-102 159684327 159684655 218 - chr6:159684528-159684619 NA NA NA NA NA chr6-101 158706518 158706776 160 - chr6:158706649-158706680 NA NA NA NA NA chr6-100 158703976 158704260 255 - chr6:158704009-158704235 NA NA NA NA NA chr6-99 157860485 157861228 379 - chr6:157860726-157860795 NA NA NA NA NA chr6-98 156472943 156473251 199 - chr6:156473069-156473159 NA NA NA NA NA chr6-97 155908478 155908820 221 - chr6:155908545-155908642 NA NA NA NA NA chr6-96 155740192 155740439 227 - chr6:155740225-155740392 NA NA NA NA NA chr6-95 155659285 155659654 189 - chr6:155659388-155659416 NA NA NA NA NA chr6-94 154398137 154398339 165 - chr6:154398178-154398306 NA NA NA NA NA chr6-93 150628643 150628885 166 - chr6:150628719-150628809 NA NA NA NA NA chr6-92 150357821 150358141 225 - chr6:150357941-150358071 NA NA NA NA NA chr6-91 150342637 150342966 255 - chr6:150342742-150342923 NA NA NA NA NA chr6-90 148952315 148952919 304 - chr6:148952588-148952641 NA NA NA NA NA chr6-89 147928340 147928561 186 - chr6:147928380-147928461 NA NA NA NA NA chr6-88 147364647 147364995 223 - chr6:147364855-147364969 NA NA NA NA NA chr6-87 145839839 145840382 237 - chr6:145840215-145840284 NA NA NA NA NA chr6-86 144378040 144378392 273 - chr6:144378058-144378213 NA NA NA NA NA chr6-85 142003110 142003518 245 - chr6:142003356-142003484 NA NA NA NA NA chr6-84 141653188 141653475 222 - chr6:141653242-141653377 NA NA NA NA NA chr6-83 141525926 141526148 184 - chr6:141525933-141526079 NA NA NA NA NA chr6-82 141002361 141002830 220 - chr6:141002651-141002704 NA NA NA NA NA chr6-81 140807819 140808125 267 - chr6:140807867-140808017 NA NA NA NA NA chr6-80 139674529 139674970 252 - chr6:139674795-139674957 NA NA NA NA NA chr6-79 138261163 138261934 266 - chr6:138261518-138261531 NA NA NA NA NA chr6-78 137804643 137805231 192 - chr6:137805133-137805193 NA NA NA NA NA chr6-77 136953359 136953774 242 - chr6:136953431-136953500 NA NA NA NA NA chr6-76 136525253 136525637 198 - chr6:136525549-136525561 NA NA NA NA NA chr6-75 130646935 130647461 189 - chr6:130647394-130647430 NA NA NA NA NA chr6-74 130352712 130353114 237 - chr6:130352909-130353045 NA NA NA NA NA chr6-73 130331917 130332406 358 - chr6:130332145-130332372 NA NA NA NA NA chr6-72 128884699 128884976 197 - chr6:128884857-128884922 NA NA NA NA NA chr6-71 126380844 126381246 230 - chr6:126380919-126380977 NA NA NA NA NA chr6-2 12630490 12630749 191 - chr6:12630535-12630612 NA NA NA NA NA chr6-70 126036968 126037488 273 - chr6:126037257-126037304 NA NA NA NA NA chr6-69 126008262 126008498 147 - chr6:126008427-126008485 NA NA NA NA NA chr6-68 125026776 125027060 188 - chr6:125026894-125027030 NA NA NA NA NA chr6-67 124559065 124559454 235 - chr6:124559252-124559435 NA NA NA NA NA chr6-66 124486892 124487436 362 - chr6:124487057-124487286 NA NA NA NA NA chr6-65 124297306 124297758 330 - chr6:124297446-124297654 NA NA NA NA NA chr6-64 120614908 120615148 193 - chr6:120614970-120615116 NA NA NA NA NA chr6-63 120007584 120007968 166 - chr6:120007664-120007695 NA NA NA NA NA chr6-62 119860456 119860760 202 - chr6:119860561-119860729 NA NA NA NA NA chr6-61 119704281 119704607 176 - chr6:119704326-119704432 NA NA NA NA NA chr6-60 119519540 119519896 254 - chr6:119519575-119519727 NA NA NA NA NA chr6-59 115864791 115865335 294 - chr6:115865035-115865083 NA NA NA NA NA chr6-58 115505630 115505858 184 - chr6:115505631-115505683 NA NA NA NA NA chr6-57 115104483 115104881 273 - chr6:115104719-115104793 NA NA NA NA NA chr6-56 112770417 112770625 157 - chr6:112770442-112770548 NA NA NA NA NA chr6-55 112410777 112411234 279 - chr6:112410971-112411072 NA NA NA NA NA chr6-54 111037791 111038129 173 - chr6:111038011-111038129 NA NA NA NA NA chr6-53 105880574 105880872 237 - chr6:105880725-105880841 NA NA NA NA NA chr6-52 104923259 104923695 286 - chr6:104923346-104923583 NA NA NA NA NA chr6-51 103888330 103888919 284 - chr6:103888431-103888477 NA NA NA NA NA chr6-50 103032475 103032942 301 - chr6:103032669-103032835 NA NA NA NA NA chr6-49 102606053 102606619 336 - chr6:102606245-102606275 NA NA NA NA NA chr6-48 102455207 102455412 153 - chr6:102455226-102455261 NA NA NA NA NA chr5-105 97636942 97637177 196 - chr5:97637008-97637147 NA NA NA NA NA chr5-104 95559384 95559778 298 - chr5:95559502-95559748 NA NA NA NA NA chr5-103 93823160 93823325 150 - chr5:93823175-93823310 NA NA NA NA NA chr5-102 92585022 92585482 294 - chr5:92585357-92585452 NA NA NA NA NA chr5-10 9164605 9164949 185 - chr5:9164651-9164783 NA NA NA NA NA chr5-9 9146235 9146516 222 - chr5:9146339-9146472 NA NA NA NA NA chr5-101 90404833 90405597 239 - chr5:90405087-90405125 NA NA NA NA NA chr5-100 89554109 89554312 159 - chr5:89554153-89554268 NA NA NA NA NA chr5-8 8927940 8928217 149 - chr5:8928058-8928079 NA NA NA NA NA chr5-99 88727006 88727410 213 - chr5:88727245-88727363 NA NA NA NA NA chr5-98 88630369 88630968 308 - chr5:88630573-88630648 NA NA NA NA NA chr5-7 8858691 8858994 191 - chr5:8858790-8858869 NA NA NA NA NA chr5-97 88534933 88535172 168 - chr5:88534983-88534999 NA NA NA NA NA chr5-96 87389558 87390078 253 - chr5:87389958-87390048 NA NA NA NA NA chr5-95 86919408 86919880 283 - chr5:86919480-86919654 NA NA NA NA NA chr5-94 86129891 86130324 231 - chr5:86130126-86130155 NA NA NA NA NA chr5-93 85218543 85218942 234 - chr5:85218591-85218738 NA NA NA NA NA chr5-92 85000235 85000434 165 - chr5:85000244-85000325 NA NA NA NA NA chr5-91 84378772 84379350 321 - chr5:84379079-84379143 NA NA NA NA NA chr5-90 82300367 82300802 287 - chr5:82300508-82300633 NA NA NA NA NA chr5-89 82164098 82164357 227 - chr5:82164226-82164357 NA NA NA NA NA chr5-88 81541273 81541501 191 - chr5:81541314-81541468 NA NA NA NA NA chr5-87 81000284 81000767 211 - chr5:81000588-81000591 NA NA NA NA NA chr5-86 79599609 79600141 288 - chr5:79599701-79599839 NA NA NA NA NA chr5-85 79594699 79595064 167 - chr5:79594858-79594879 NA NA NA NA NA chr5-84 75591146 75591571 270 - chr5:75591235-75591350 NA NA NA NA NA chr5-83 75191236 75191552 239 - chr5:75191281-75191443 NA NA NA NA NA chr5-82 75072469 75072817 274 - chr5:75072539-75072731 NA NA NA NA NA chr5-81 74680622 74681205 280 - chr5:74680714-74680893 NA NA NA NA NA chr5-80 73862991 73863285 147 - chr5:73863102-73863126 NA NA NA NA NA chr5-79 73352657 73352952 202 - chr5:73352779-73352950 NA NA NA NA NA chr5-6 7259550 7259924 225 - chr5:7259654-7259760 NA NA NA NA NA chr5-78 72161160 72161511 225 - chr5:72161289-72161386 NA NA NA NA NA chr5-77 72126990 72127420 220 - chr5:72127108-72127258 NA NA NA NA NA chr5-76 67750885 67751248 146 - chr5:67751179-67751187 NA NA NA NA NA chr5-75 67688724 67689100 226 - chr5:67688868-67688944 NA NA NA NA NA chr5-74 67324495 67324907 193 - chr5:67324528-67324648 NA NA NA NA NA chr5-73 66526355 66526723 239 - chr5:66526609-66526719 NA NA NA NA NA chr5-72 64864377 64864552 171 - chr5:64864393-64864552 NA NA NA NA NA chr5-71 64605924 64606295 216 - chr5:64606158-64606219 NA NA NA NA NA chr5-70 63864426 63865031 267 - chr5:63864600-63864788 NA NA NA NA NA chr5-69 62264271 62264722 339 - chr5:62264353-62264461 NA NA NA NA NA chr5-68 58491022 58491254 169 - chr5:58491148-58491173 NA NA NA NA NA chr5-67 57954832 57955322 388 - chr5:57955228-57955318 NA NA NA NA NA chr5-66 57766277 57766510 213 - chr5:57766291-57766444 NA NA NA NA NA chr5-65 56233911 56234362 321 - chr5:56233990-56234079 NA NA NA NA NA chr5-64 55742798 55743220 177 - chr5:55743124-55743126 NA NA NA NA NA chr5-63 54717817 54718148 276 - chr5:54717969-54718092 NA NA NA NA NA chr5-62 52649044 52649310 200 - chr5:52649054-52649188 NA NA NA NA NA chr5-61 52207917 52208674 339 - chr5:52208121-52208143 NA NA NA NA NA chr5-60 51286092 51286800 377 - chr5:51286520-51286665 NA NA NA NA NA chr5-5 4764570 4764843 162 - chr5:4764684-4764735 NA NA NA NA NA chr5-4 4686983 4687169 170 - chr5:4686991-4687113 NA NA NA NA NA chr5-3 4518179 4518448 198 - chr5:4518234-4518361 NA NA NA NA NA chr5-59 44879543 44879928 243 - chr5:44879666-44879767 NA NA NA NA NA chr5-58 44083293 44083643 255 - chr5:44083304-44083520 NA NA NA NA NA chr5-57 43979836 43980369 274 - chr5:43980131-43980218 NA NA NA NA NA chr5-56 42639698 42639985 225 - chr5:42639932-42639971 NA NA NA NA NA chr5-55 41055495 41055883 214 - chr5:41055642-41055700 NA NA NA NA NA chr5-54 40770101 40770409 236 - chr5:40770167-40770331 NA NA NA NA NA chr5-53 40684972 40685690 351 - chr5:40685359-40685496 NA NA NA NA NA chr5-52 40371981 40372367 205 - chr5:40372184-40372252 NA NA NA NA NA chr5-51 40368579 40368813 149 - chr5:40368653-40368695 NA NA NA NA NA chr5-50 39804723 39805120 283 - chr5:39804884-39805053 NA NA NA NA NA chr5-49 39756033 39756421 181 - chr5:39756210-39756322 NA NA NA NA NA chr5-2 3921292 3921631 213 - chr5:3921421-3921506 NA NA NA NA NA chr5-48 39030681 39030844 148 - chr5:39030710-39030843 NA NA NA NA NA chr5-47 38579503 38579900 214 - chr5:38579568-38579721 NA NA NA NA NA chr5-46 38473670 38474243 315 - chr5:38473679-38473908 NA NA NA NA NA chr5-45 37511069 37511275 150 - chr5:37511143-37511225 NA NA NA NA NA chr5-44 36881971 36882308 208 - chr5:36882132-36882297 NA NA NA NA NA chr5-43 33992302 33992808 273 - chr5:33992652-33992692 NA NA NA NA NA chr5-42 33595753 33596221 225 - chr5:33595997-33596141 NA NA NA NA NA chr5-41 32571186 32571622 276 - chr5:32571262-32571434 NA NA NA NA NA chr5-40 32397090 32397382 198 - chr5:32397277-32397381 NA NA NA NA NA chr5 3205971 3206441 215 - chr5:3206204-3206334 NA NA NA NA NA chr5-39 31886305 31886499 149 - chr5:31886357-31886461 NA NA NA NA NA chr5-38 30936635 30936953 221 - chr5:30936683-30936807 NA NA NA NA NA chr5-37 30296511 30296865 336 - chr5:30296563-30296845 NA NA NA NA NA chr5-36 30224681 30225017 184 - chr5:30224871-30224903 NA NA NA NA NA chr5-35 28920089 28920528 232 - chr5:28920234-28920262 NA NA NA NA NA chr5-34 28738999 28739408 178 - chr5:28739124-28739225 NA NA NA NA NA chr5-33 28729039 28729349 231 - chr5:28729098-28729250 NA NA NA NA NA chr5-32 28146493 28146816 158 - chr5:28146555-28146614 NA NA NA NA NA chr5-31 27553557 27553888 313 - chr5:27553557-27553864 NA NA NA NA NA chr5-30 27519936 27520219 165 - chr5:27520075-27520132 NA NA NA NA NA chr5-29 27513739 27514137 161 - chr5:27514055-27514137 NA NA NA NA NA chr5-28 27061626 27062057 262 - chr5:27061767-27061860 NA NA NA NA NA chr5-27 27021267 27021737 274 - chr5:27021513-27021591 NA NA NA NA NA chr5-26 25983956 25984364 283 - chr5:25984075-25984233 NA NA NA NA NA chr5-25 25708502 25708922 211 - chr5:25708657-25708677 NA NA NA NA NA chr5-24 24187968 24188681 290 - chr5:24188454-24188485 NA NA NA NA NA chr5-23 23940360 23940824 244 - chr5:23940686-23940710 NA NA NA NA NA chr5-22 23914366 23915141 394 - chr5:23914580-23914599 NA NA NA NA NA chr5-21 21180264 21180480 211 - chr5:21180269-21180475 NA NA NA NA NA chr5-20 20543335 20543597 200 - chr5:20543388-20543526 NA NA NA NA NA chr5-163 179029909 179030177 153 - chr5:179030061-179030173 NA NA NA NA NA chr5-162 175282626 175282971 172 - chr5:175282703-175282817 NA NA NA NA NA chr5-19 17386696 17386960 223 - chr5:17386720-17386820 NA NA NA NA NA chr5-161 172612515 172612750 192 - chr5:172612601-172612750 NA NA NA NA NA chr5-160 170318853 170319316 224 - chr5:170319224-170319269 NA NA NA NA NA chr5-159 168758857 168759337 333 - chr5:168758968-168759154 NA NA NA NA NA chr5-158 168001536 168001812 182 - chr5:168001630-168001718 NA NA NA NA NA chr5-157 167192603 167192828 184 - chr5:167192634-167192777 NA NA NA NA NA chr5-156 167076135 167076420 202 - chr5:167076203-167076322 NA NA NA NA NA chr5-155 166062055 166062467 222 - chr5:166062167-166062199 NA NA NA NA NA chr5-154 165946439 165947290 417 - chr5:165947138-165947204 NA NA NA NA NA chr5-153 163863309 163863846 324 - chr5:163863374-163863485 NA NA NA NA NA chr5-152 163772126 163772381 163 - chr5:163772274-163772287 NA NA NA NA NA chr5-18 16369634 16369898 250 - chr5:16369689-16369897 NA NA NA NA NA chr5-151 163540713 163541402 317 - chr5:163541034-163541064 NA NA NA NA NA chr5-150 162544026 162544409 289 - chr5:162544140-162544335 NA NA NA NA NA chr5-17 16030126 16030560 239 - chr5:16030200-16030374 NA NA NA NA NA chr5-149 160208018 160208544 274 - chr5:160208264-160208290 NA NA NA NA NA chr5-148 159769154 159769537 262 - chr5:159769308-159769449 NA NA NA NA NA chr5-147 156513806 156514075 188 - chr5:156513965-156514020 NA NA NA NA NA chr5-16 15539243 15539542 182 - chr5:15539390-15539435 NA NA NA NA NA chr5-146 154252652 154252952 198 - chr5:154252792-154252888 NA NA NA NA NA chr5-145 154027014 154027355 237 - chr5:154027169-154027268 NA NA NA NA NA chr5-15 15337434 15337840 311 - chr5:15337622-15337776 NA NA NA NA NA chr5-144 150504698 150505185 281 - chr5:150504841-150504865 NA NA NA NA NA chr5-143 149293576 149293952 248 - chr5:149293660-149293831 NA NA NA NA NA chr5-142 148787302 148787586 149 - chr5:148787404-148787418 NA NA NA NA NA chr5-141 148707968 148708536 393 - chr5:148708071-148708337 NA NA NA NA NA chr5-140 146760560 146760982 225 - chr5:146760774-146760885 NA NA NA NA NA chr5-139 146015323 146015676 312 - chr5:146015423-146015612 NA NA NA NA NA chr5-138 145383608 145384030 190 - chr5:145383683-145383763 NA NA NA NA NA chr5-137 144284308 144284596 182 - chr5:144284485-144284561 NA NA NA NA NA chr5-14 14170930 14171217 206 - chr5:14171047-14171172 NA NA NA NA NA chr5-13 14035328 14035676 231 - chr5:14035370-14035484 NA NA NA NA NA chr5-12 13838848 13839341 267 - chr5:13839109-13839220 NA NA NA NA NA chr5-136 136625974 136626470 252 - chr5:136626198-136626206 NA NA NA NA NA chr5-135 133461221 133461533 201 - chr5:133461311-133461415 NA NA NA NA NA chr5-134 133109660 133110329 359 - chr5:133109931-133110077 NA NA NA NA NA chr5-133 132970673 132970914 151 - chr5:132970714-132970835 NA NA NA NA NA chr5-132 131868535 131868864 236 - chr5:131868580-131868785 NA NA NA NA NA chr5-131 129828563 129828814 208 - chr5:129828642-129828807 NA NA NA NA NA chr5-130 129326675 129326912 203 - chr5:129326676-129326845 NA NA NA NA NA chr5-129 126001241 126001950 383 - chr5:126001650-126001707 NA NA NA NA NA chr5-128 125187955 125188420 231 - chr5:125187955-125188108 NA NA NA NA NA chr5-127 124103284 124103785 280 - chr5:124103661-124103720 NA NA NA NA NA chr5-126 123766760 123767037 243 - chr5:123766775-123766946 NA NA NA NA NA chr5-125 123627413 123627608 149 - chr5:123627540-123627589 NA NA NA NA NA chr5-124 123092065 123092413 187 - chr5:123092274-123092300 NA NA NA NA NA chr5-123 122458227 122458493 152 - chr5:122458239-122458277 NA NA NA NA NA chr5-122 121572121 121572559 257 - chr5:121572418-121572494 NA NA NA NA NA chr5-121 118621273 118621476 152 - chr5:118621303-118621418 NA NA NA NA NA chr5-120 118128954 118129516 388 - chr5:118129219-118129402 NA NA NA NA NA chr5-119 118016391 118016733 183 - chr5:118016490-118016514 NA NA NA NA NA chr5-118 114415462 114415678 187 - chr5:114415543-114415643 NA NA NA NA NA chr5-117 112733868 112734240 252 - chr5:112733987-112734146 NA NA NA NA NA chr5-116 112485786 112486075 176 - chr5:112485905-112485980 NA NA NA NA NA chr5-115 111498687 111499005 256 - chr5:111498781-111498975 NA NA NA NA NA chr5-114 106949725 106949983 174 - chr5:106949843-106949933 NA NA NA NA NA chr5-113 105916330 105916653 179 - chr5:105916438-105916473 NA NA NA NA NA chr5-112 105890242 105890646 205 - chr5:105890429-105890443 NA NA NA NA NA chr5-111 105313023 105313289 219 - chr5:105313177-105313255 NA NA NA NA NA chr5-110 105014714 105015098 289 - chr5:105014770-105014964 NA NA NA NA NA chr5-109 104913786 104914016 164 - chr5:104913829-104913927 NA NA NA NA NA chr5-108 104472869 104473225 244 - chr5:104473048-104473180 NA NA NA NA NA chr5-107 104344311 104344569 170 - chr5:104344429-104344511 NA NA NA NA NA chr5-11 10349912 10350335 273 - chr5:10350170-10350260 NA NA NA NA NA chr5-106 100831611 100831902 171 - chr5:100831635-100831750 NA NA NA NA NA chr4-100 99568307 99568685 234 - chr4:99568358-99568448 NA NA NA NA NA chr4-99 98130012 98130176 146 - chr4:98130039-98130167 NA NA NA NA NA chr4-98 98106393 98106687 172 - chr4:98106561-98106611 NA NA NA NA NA chr4-97 97641740 97642152 228 - chr4:97641817-97641861 NA NA NA NA NA chr4-96 97209798 97210375 352 - chr4:97210031-97210211 NA NA NA NA NA chr4-95 96708058 96708270 171 - chr4:96708078-96708222 NA NA NA NA NA chr4-94 96211139 96211504 197 - chr4:96211258-96211399 NA NA NA NA NA chr4-93 96058994 96059323 223 - chr4:96059203-96059320 NA NA NA NA NA chr4-92 93662389 93662709 247 - chr4:93662418-93662504 NA NA NA NA NA chr4-91 93315550 93315819 153 - chr4:93315700-93315805 NA NA NA NA NA chr4-90 93064072 93064704 278 - chr4:93064540-93064685 NA NA NA NA NA chr4-89 92107470 92107979 213 - chr4:92107637-92107640 NA NA NA NA NA chr4-88 91530087 91530493 200 - chr4:91530303-91530306 NA NA NA NA NA chr4-87 91317019 91317395 228 - chr4:91317165-91317245 NA NA NA NA NA chr4-86 90042005 90042650 298 - chr4:90042187-90042198 NA NA NA NA NA chr4-85 87895404 87895775 224 - chr4:87895653-87895662 NA NA NA NA NA chr4-84 86565798 86566242 221 - chr4:86566005-86566033 NA NA NA NA NA chr4-83 85637886 85638338 343 - chr4:85638051-85638111 NA NA NA NA NA chr4-82 85613449 85613717 239 - chr4:85613457-85613681 NA NA NA NA NA chr4-81 83297231 83297738 190 - chr4:83297303-83297323 NA NA NA NA NA chr4-80 81366376 81366630 222 - chr4:81366416-81366606 NA NA NA NA NA chr4-79 78735108 78735623 322 - chr4:78735207-78735336 NA NA NA NA NA chr4-78 75522186 75522546 194 - chr4:75522190-75522326 NA NA NA NA NA chr4-77 73723220 73723469 227 - chr4:73723300-73723461 NA NA NA NA NA chr4-76 73568732 73569041 230 - chr4:73568787-73568954 NA NA NA NA NA chr4-75 72559609 72559879 189 - chr4:72559679-72559841 NA NA NA NA NA chr4-74 71197383 71197996 359 - chr4:71197540-71197632 NA NA NA NA NA chr4-73 70070609 70070952 171 - chr4:70070764-70070808 NA NA NA NA NA chr4-72 69886762 69887188 231 - chr4:69887019-69887185 NA NA NA NA NA chr4-71 68139950 68140462 236 - chr4:68140334-68140438 NA NA NA NA NA chr4-70 67534499 67534735 178 - chr4:67534536-67534656 NA NA NA NA NA chr4-69 66272425 66272860 345 - chr4:66272743-66272846 NA NA NA NA NA chr4-68 66190158 66190537 221 - chr4:66190345-66190466 NA NA NA NA NA chr4-67 65831338 65832183 426 - chr4:65831595-65831709 NA NA NA NA NA chr4-66 62836161 62836429 242 - chr4:62836190-62836354 NA NA NA NA NA chr4-65 62555777 62556129 158 - chr4:62555994-62556004 NA NA NA NA NA chr4-64 62358535 62359030 358 - chr4:62358629-62358824 NA NA NA NA NA chr4-63 60200459 60200835 239 - chr4:60200706-60200808 NA NA NA NA NA chr4-62 59326820 59327260 389 - chr4:59326952-59327188 NA NA NA NA NA chr4-61 58728506 58728797 173 - chr4:58728558-58728613 NA NA NA NA NA chr4-60 58376778 58377168 190 - chr4:58377071-58377083 NA NA NA NA NA chr4-59 57928817 57929166 167 - chr4:57928866-57928926 NA NA NA NA NA chr4-58 57774054 57774518 220 - chr4:57774216-57774288 NA NA NA NA NA chr4-57 57599737 57600023 172 - chr4:57599844-57599888 NA NA NA NA NA chr4-56 56782218 56782488 147 - chr4:56782420-56782444 NA NA NA NA NA chr4-55 56017467 56017942 199 - chr4:56017623-56017626 NA NA NA NA NA chr4-54 55896515 55896856 253 - chr4:55896618-55896783 NA NA NA NA NA chr4-53 54964270 54964953 276 - chr4:54964772-54964801 NA NA NA NA NA chr4-52 54084380 54084790 227 - chr4:54084396-54084538 NA NA NA NA NA chr4-51 54076391 54076860 219 - chr4:54076519-54076560 NA NA NA NA NA chr4-50 53092292 53092589 212 - chr4:53092323-53092450 NA NA NA NA NA chr4-49 53048670 53048976 227 - chr4:53048821-53048969 NA NA NA NA NA chr4-48 52477584 52477815 160 - chr4:52477669-52477750 NA NA NA NA NA chr4-47 52352374 52352658 176 - chr4:52352510-52352650 NA NA NA NA NA chr4 5051001 5051245 185 - chr4:5051088-5051214 NA NA NA NA NA chr4-46 48610399 48610662 176 - chr4:48610487-48610578 NA NA NA NA NA chr4-45 48485238 48485541 183 - chr4:48485440-48485503 NA NA NA NA NA chr4-44 47044342 47044822 375 - chr4:47044511-47044756 NA NA NA NA NA chr4-43 46820886 46821303 214 - chr4:46820939-46821050 NA NA NA NA NA chr4-42 46710783 46711256 243 - chr4:46710866-46710879 NA NA NA NA NA chr4-41 46443590 46443926 300 - chr4:46443596-46443884 NA NA NA NA NA chr4-40 45014884 45015177 190 - chr4:45014930-45015017 NA NA NA NA NA chr4-39 44939380 44939696 175 - chr4:44939600-44939634 NA NA NA NA NA chr4-38 44451678 44452005 180 - chr4:44451893-44451926 NA NA NA NA NA chr4-37 43686211 43686675 255 - chr4:43686444-43686538 NA NA NA NA NA chr4-36 42997027 42997377 288 - chr4:42997071-42997297 NA NA NA NA NA chr4-35 42110320 42110689 270 - chr4:42110416-42110587 NA NA NA NA NA chr4-34 39245712 39246190 284 - chr4:39245922-39246012 NA NA NA NA NA chr4-33 39030915 39031578 346 - chr4:39031238-39031267 NA NA NA NA NA chr4-32 37749916 37750101 153 - chr4:37749918-37750039 NA NA NA NA NA chr4-31 36994340 36995126 271 - chr4:36994492-36994542 NA NA NA NA NA chr4-30 36971692 36972138 189 - chr4:36971694-36971796 NA NA NA NA NA chr4-29 36431170 36431825 298 - chr4:36431304-36431454 NA NA NA NA NA chr4-28 35952258 35952782 209 - chr4:35952380-35952441 NA NA NA NA NA chr4-27 35949378 35949573 149 - chr4:35949392-35949495 NA NA NA NA NA chr4-26 35917403 35917809 309 - chr4:35917487-35917699 NA NA NA NA NA chr4-25 35363041 35363381 207 - chr4:35363140-35363261 NA NA NA NA NA chr4-24 34924968 34925482 309 - chr4:34925323-34925327 NA NA NA NA NA chr4-23 34501127 34501474 186 - chr4:34501344-34501369 NA NA NA NA NA chr4-22 34387951 34388299 175 - chr4:34388080-34388095 NA NA NA NA NA chr4-21 34193258 34193495 190 - chr4:34193337-34193480 NA NA NA NA NA chr4-20 34011028 34011581 233 - chr4:34011086-34011192 NA NA NA NA NA chr4-19 33750290 33750548 172 - chr4:33750312-33750438 NA NA NA NA NA chr4-18 33210321 33210867 270 - chr4:33210493-33210501 NA NA NA NA NA chr4-17 32812707 32813392 323 - chr4:32813096-32813101 NA NA NA NA NA chr4-16 32700268 32700440 156 - chr4:32700286-32700426 NA NA NA NA NA chr4-15 32691924 32692344 219 - chr4:32692196-32692197 NA NA NA NA NA chr4-14 32137381 32137843 267 - chr4:32137605-32137750 NA NA NA NA NA chr4-13 31779891 31780355 240 - chr4:31780038-31780048 NA NA NA NA NA chr4-12 31620898 31621159 197 - chr4:31620915-31621048 NA NA NA NA NA chr4-11 31525567 31525863 223 - chr4:31525643-31525791 NA NA NA NA NA chr4-10 31159641 31159864 195 - chr4:31159693-31159860 NA NA NA NA NA chr4-9 30652522 30652747 177 - chr4:30652607-30652736 NA NA NA NA NA chr4-8 30386488 30386716 227 - chr4:30386490-30386716 NA NA NA NA NA chr4-7 30336841 30337065 187 - chr4:30336885-30337035 NA NA NA NA NA chr4-6 28614186 28614470 162 - chr4:28614271-28614311 NA NA NA NA NA chr4-5 20392315 20392913 301 - chr4:20392686-20392692 NA NA NA NA NA chr4-155 188964470 188964910 206 - chr4:188964650-188964778 NA NA NA NA NA chr4-4 18793088 18793371 189 - chr4:18793266-18793361 NA NA NA NA NA chr4-154 186580635 186581029 251 - chr4:186580781-186580887 NA NA NA NA NA chr4-153 185646359 185646686 185 - chr4:185646500-185646541 NA NA NA NA NA chr4-152 183777165 183777409 150 - chr4:183777169-183777285 NA NA NA NA NA chr4-151 181319013 181319409 210 - chr4:181319111-181319135 NA NA NA NA NA chr4-150 180731954 180732370 351 - chr4:180732051-180732337 NA NA NA NA NA chr4-149 176974557 176974864 238 - chr4:176974671-176974840 NA NA NA NA NA chr4-148 172070888 172071113 198 - chr4:172070942-172071113 NA NA NA NA NA chr4-147 171297418 171298071 367 - chr4:171297731-171297812 NA NA NA NA NA chr4-146 170914084 170914407 160 - chr4:170914214-170914233 NA NA NA NA NA chr4-145 170485308 170485586 203 - chr4:170485521-170485557 NA NA NA NA NA chr4-144 170161708 170161948 178 - chr4:170161750-170161866 NA NA NA NA NA chr4-143 168998327 168998662 310 - chr4:168998345-168998630 NA NA NA NA NA chr4-142 166264915 166265571 322 - chr4:166265180-166265195 NA NA NA NA NA chr4-141 165649100 165649613 211 - chr4:165649153-165649228 NA NA NA NA NA chr4-140 164833074 164833510 240 - chr4:164833277-164833321 NA NA NA NA NA chr4-139 164416938 164417272 200 - chr4:164417203-164417269 NA NA NA NA NA chr4-138 162852143 162852571 283 - chr4:162852399-162852537 NA NA NA NA NA chr4-137 159689180 159689705 401 - chr4:159689482-159689611 NA NA NA NA NA chr4-136 158778278 158778710 216 - chr4:158778455-158778492 NA NA NA NA NA chr4-135 149724780 149725337 257 - chr4:149724831-149724988 NA NA NA NA NA chr4-134 145219907 145220231 191 - chr4:145220036-145220086 NA NA NA NA NA chr4-133 145096308 145096612 188 - chr4:145096392-145096464 NA NA NA NA NA chr4-132 144432381 144432647 184 - chr4:144432401-144432503 NA NA NA NA NA chr4-131 144101986 144102462 347 - chr4:144102003-144102307 NA NA NA NA NA chr4-130 143254798 143255142 184 - chr4:143254913-143254967 NA NA NA NA NA chr4-3 14127125 14127583 271 - chr4:14127187-14127271 NA NA NA NA NA chr4-129 139361877 139362197 191 - chr4:139361944-139362006 NA NA NA NA NA chr4-128 137747776 137748219 273 - chr4:137747852-137747955 NA NA NA NA NA chr4-127 136698416 136698775 279 - chr4:136698721-136698770 NA NA NA NA NA chr4-2 13619452 13619927 285 - chr4:13619596-13619691 NA NA NA NA NA chr4-126 135729253 135729610 272 - chr4:135729473-135729570 NA NA NA NA NA chr4-125 125262315 125262820 488 - chr4:125262331-125262800 NA NA NA NA NA chr4-124 122448939 122449346 256 - chr4:122449002-122449107 NA NA NA NA NA chr4-123 121311823 121312052 183 - chr4:121311886-121311931 NA NA NA NA NA chr4-122 120153829 120154108 150 - chr4:120153865-120153886 NA NA NA NA NA chr4-121 118973981 118974564 271 - chr4:118974234-118974249 NA NA NA NA NA chr4-120 116712923 116713388 251 - chr4:116713148-116713207 NA NA NA NA NA chr4-119 116693371 116693698 231 - chr4:116693395-116693578 NA NA NA NA NA chr4-118 116613979 116614267 184 - chr4:116614110-116614244 NA NA NA NA NA chr4-117 115675421 115675641 194 - chr4:115675436-115675552 NA NA NA NA NA chr4-116 114751583 114751901 170 - chr4:114751684-114751740 NA NA NA NA NA chr4-115 113815309 113815738 206 - chr4:113815560-113815599 NA NA NA NA NA chr4-114 113698305 113698539 173 - chr4:113698415-113698527 NA NA NA NA NA chr4-113 113004542 113004756 171 - chr4:113004618-113004746 NA NA NA NA NA chr4-112 111258232 111259013 267 - chr4:111258711-111258724 NA NA NA NA NA chr4-111 108607326 108607668 219 - chr4:108607426-108607522 NA NA NA NA NA chr4-110 108425956 108426350 345 - chr4:108425983-108426279 NA NA NA NA NA chr4-109 108353673 108353951 244 - chr4:108353683-108353845 NA NA NA NA NA chr4-108 106613563 106613809 181 - chr4:106613684-106613800 NA NA NA NA NA chr4-107 105325753 105326043 164 - chr4:105325885-105325935 NA NA NA NA NA chr4-106 104970407 104970617 156 - chr4:104970407-104970509 NA NA NA NA NA chr4-105 104937154 104937312 149 - chr4:104937155-104937295 NA NA NA NA NA chr4-104 102339318 102339761 273 - chr4:102339344-102339543 NA NA NA NA NA chr4-103 100998371 100998732 283 - chr4:100998672-100998721 NA NA NA NA NA chr4-102 100510667 100510868 198 - chr4:100510667-100510864 NA NA NA NA NA chr4-101 100392915 100393292 187 - chr4:100393128-100393171 NA NA NA NA NA chr3-80 99798414 99798778 232 - chr3:99798616-99798716 NA NA NA NA NA chr3-79 99569348 99569658 185 - chr3:99569498-99569505 NA NA NA NA NA chr3-78 99354235 99354452 211 - chr3:99354243-99354452 NA NA NA NA NA chr3-77 96808080 96808689 378 - chr3:96808303-96808450 NA NA NA NA NA chr3-76 96479121 96479693 275 - chr3:96479202-96479324 NA NA NA NA NA chr3-75 96440172 96440471 198 - chr3:96440239-96440268 NA NA NA NA NA chr3-74 96394321 96394801 170 - chr3:96394709-96394725 NA NA NA NA NA chr3-73 96152760 96153285 363 - chr3:96152907-96153108 NA NA NA NA NA chr3-72 95983593 95983978 273 - chr3:95983736-95983897 NA NA NA NA NA chr3-71 95299027 95299606 305 - chr3:95299430-95299438 NA NA NA NA NA chr3-70 95259600 95259851 165 - chr3:95259620-95259699 NA NA NA NA NA chr3-69 94895907 94896414 429 - chr3:94895958-94896309 NA NA NA NA NA chr3-68 94687093 94688154 469 - chr3:94687286-94687295 NA NA NA NA NA chr3-67 94053890 94054414 258 - chr3:94054196-94054285 NA NA NA NA NA chr3-66 93958093 93958339 177 - chr3:93958169-93958291 NA NA NA NA NA chr3-65 89428705 89429163 237 - chr3:89429044-89429060 NA NA NA NA NA chr3-64 89090158 89090689 245 - chr3:89090379-89090391 NA NA NA NA NA chr3-63 88270487 88270862 207 - chr3:88270614-88270653 NA NA NA NA NA chr3-62 87434569 87435302 358 - chr3:87435075-87435102 NA NA NA NA NA chr3-61 86602830 86603283 282 - chr3:86602868-86602998 NA NA NA NA NA chr3-60 85582455 85582652 167 - chr3:85582482-85582619 NA NA NA NA NA chr3-59 85178723 85179192 176 - chr3:85179095-85179136 NA NA NA NA NA chr3-58 83654633 83655136 311 - chr3:83654780-83654809 NA NA NA NA NA chr3-57 82442690 82443231 259 - chr3:82442715-82442841 NA NA NA NA NA chr3-56 80659983 80660373 317 - chr3:80660045-80660182 NA NA NA NA NA chr3-55 79033331 79033769 174 - chr3:79033376-79033462 NA NA NA NA NA chr3-54 76115544 76116349 389 - chr3:76115786-76115887 NA NA NA NA NA chr3-53 74760160 74760506 210 - chr3:74760267-74760393 NA NA NA NA NA chr3-52 74128640 74129386 296 - chr3:74129123-74129247 NA NA NA NA NA chr3-51 73209813 73210345 318 - chr3:73210066-73210185 NA NA NA NA NA chr3-50 71251201 71251466 247 - chr3:71251218-71251459 NA NA NA NA NA chr3-49 70340266 70340698 207 - chr3:70340537-70340611 NA NA NA NA NA chr3-48 69693442 69693676 176 - chr3:69693510-69693648 NA NA NA NA NA chr3-47 69552689 69552956 181 - chr3:69552741-69552836 NA NA NA NA NA chr3-46 67134424 67134902 294 - chr3:67134728-67134758 NA NA NA NA NA chr3-45 67032513 67032761 222 - chr3:67032525-67032721 NA NA NA NA NA chr3-6 6655785 6656204 186 - chr3:6655835-6655874 NA NA NA NA NA chr3-44 62759431 62759648 156 - chr3:62759479-62759574 NA NA NA NA NA chr3-43 61734683 61734856 161 - chr3:61734698-61734847 NA NA NA NA NA chr3-42 59892469 59892861 216 - chr3:59892633-59892673 NA NA NA NA NA chr3-41 59863739 59864126 257 - chr3:59863975-59864102 NA NA NA NA NA chr3-40 56921205 56921466 169 - chr3:56921260-56921337 NA NA NA NA NA chr3-39 56320122 56320413 213 - chr3:56320128-56320220 NA NA NA NA NA chr3-38 56091426 56091775 220 - chr3:56091485-56091576 NA NA NA NA NA chr3-37 55314034 55314577 291 - chr3:55314412-55314453 NA NA NA NA NA chr3-36 55044439 55044960 312 - chr3:55044553-55044656 NA NA NA NA NA chr3-35 53929748 53930050 191 - chr3:53929831-53929911 NA NA NA NA NA chr3-34 53709553 53709806 152 - chr3:53709631-53709682 NA NA NA NA NA chr3-33 50100730 50101141 255 - chr3:50100971-50101070 NA NA NA NA NA chr3-32 48770629 48770870 159 - chr3:48770730-48770823 NA NA NA NA NA chr3-31 42778110 42778981 480 - chr3:42778399-42778455 NA NA NA NA NA chr3-30 42137865 42138139 196 - chr3:42137891-42138009 NA NA NA NA NA chr3-29 41452724 41453029 283 - chr3:41452751-41452968 NA NA NA NA NA chr3-5 3975345 3975975 285 - chr3:3975415-3975553 NA NA NA NA NA chr3-28 39685424 39685744 166 - chr3:39685597-39685647 NA NA NA NA NA chr3-4 3745937 3746212 210 - chr3:3745945-3746090 NA NA NA NA NA chr3-27 36417897 36418377 343 - chr3:36417955-36418161 NA NA NA NA NA chr3-26 36392567 36393069 271 - chr3:36392950-36392990 NA NA NA NA NA chr3-25 36125337 36125881 325 - chr3:36125673-36125779 NA NA NA NA NA chr3-24 34249167 34249461 192 - chr3:34249181-34249308 NA NA NA NA NA chr3-23 33574011 33574569 249 - chr3:33574364-33574392 NA NA NA NA NA chr3-22 33519215 33519611 207 - chr3:33519362-33519407 NA NA NA NA NA chr3-21 30857589 30857954 277 - chr3:30857629-30857730 NA NA NA NA NA chr3-20 30222188 30222455 156 - chr3:30222211-30222330 NA NA NA NA NA chr3-3 2992629 2992832 174 - chr3:2992665-2992810 NA NA NA NA NA chr3-19 29861173 29861512 268 - chr3:29861184-29861381 NA NA NA NA NA chr3-18 28774609 28775003 245 - chr3:28774803-28774914 NA NA NA NA NA chr3-17 27206095 27206556 295 - chr3:27206278-27206407 NA NA NA NA NA chr3-16 24660893 24661330 237 - chr3:24661082-24661143 NA NA NA NA NA chr3-15 22910380 22910656 156 - chr3:22910421-22910457 NA NA NA NA NA chr3-14 22369632 22370005 163 - chr3:22369745-22369816 NA NA NA NA NA chr3-13 22190658 22191001 266 - chr3:22190741-22190930 NA NA NA NA NA chr3-12 21318087 21318782 322 - chr3:21318172-21318185 NA NA NA NA NA chr3-11 20173816 20174111 256 - chr3:20173893-20174110 NA NA NA NA NA chr3-155 191880736 191881011 219 - chr3:191880945-191881006 NA NA NA NA NA chr3-154 191277622 191277910 249 - chr3:191277622-191277832 NA NA NA NA NA chr3-153 190827117 190827432 211 - chr3:190827181-190827288 NA NA NA NA NA chr3-152 190686783 190687227 220 - chr3:190686921-190686988 NA NA NA NA NA chr3-151 189657104 189657413 181 - chr3:189657247-189657330 NA NA NA NA NA chr3-150 188597438 188597708 193 - chr3:188597490-188597606 NA NA NA NA NA chr3-149 188591675 188592019 249 - chr3:188591765-188591919 NA NA NA NA NA chr3-148 187994334 187994922 397 - chr3:187994507-187994713 NA NA NA NA NA chr3-147 187419853 187420272 238 - chr3:187420066-187420123 NA NA NA NA NA chr3-146 187361040 187361408 245 - chr3:187361122-187361279 NA NA NA NA NA chr3-145 186595626 186595907 155 - chr3:186595754-186595787 NA NA NA NA NA chr3-144 185456675 185457045 220 - chr3:185456914-185456962 NA NA NA NA NA chr3-143 184966630 184966974 193 - chr3:184966754-184966814 NA NA NA NA NA chr3-142 184576390 184576679 184 - chr3:184576445-184576524 NA NA NA NA NA chr3-141 180118836 180119068 226 - chr3:180118836-180119056 NA NA NA NA NA chr3-140 179405783 179406113 193 - chr3:179406010-179406066 NA NA NA NA NA chr3-139 178895087 178895614 369 - chr3:178895116-178895470 NA NA NA NA NA chr3-138 177901422 177901826 339 - chr3:177901523-177901797 NA NA NA NA NA chr3-10 17709547 17710016 368 - chr3:17709599-17709866 NA NA NA NA NA chr3-137 176702331 176702557 147 - chr3:176702454-176702522 NA NA NA NA NA chr3-136 175491507 175491983 243 - chr3:175491623-175491659 NA NA NA NA NA chr3-9 17426396 17426853 241 - chr3:17426646-17426739 NA NA NA NA NA chr3-135 173058281 173058540 162 - chr3:173058450-173058467 NA NA NA NA NA chr3-134 172822384 172822564 174 - chr3:172822385-172822557 NA NA NA NA NA chr3-133 171997535 171997833 153 - chr3:171997618-171997636 NA NA NA NA NA chr3-2 1701193 1701432 156 - chr3:1701247-1701320 NA NA NA NA NA chr3-132 169479884 169480290 190 - chr3:169480022-169480048 NA NA NA NA NA chr3-131 168674303 168674592 264 - chr3:168674341-168674530 NA NA NA NA NA chr3-130 167705447 167705950 212 - chr3:167705787-167705861 NA NA NA NA NA chr3-8 16475478 16475995 224 - chr3:16475880-16475981 NA NA NA NA NA chr3-129 164426293 164426772 289 - chr3:164426544-164426643 NA NA NA NA NA chr3-128 164137829 164138310 287 - chr3:164137958-164138051 NA NA NA NA NA chr3-127 163133854 163134276 274 - chr3:163133987-163134083 NA NA NA NA NA chr3-126 162549371 162549773 246 - chr3:162549569-162549743 NA NA NA NA NA chr3-125 161687596 161687973 182 - chr3:161687701-161687748 NA NA NA NA NA chr3-124 159285649 159285998 196 - chr3:159285794-159285821 NA NA NA NA NA chr3-123 157588895 157589405 284 - chr3:157589087-157589101 NA NA NA NA NA chr3-122 155002482 155002712 195 - chr3:155002484-155002578 NA NA NA NA NA chr3-121 152548749 152549166 239 - chr3:152548918-152548961 NA NA NA NA NA chr3-120 152018736 152019052 159 - chr3:152018752-152018848 NA NA NA NA NA chr3-119 145978110 145978382 161 - chr3:145978146-145978246 NA NA NA NA NA chr3-118 144898723 144899039 167 - chr3:144898916-144898934 NA NA NA NA NA chr3-117 144889940 144890260 256 - chr3:144889971-144890163 NA NA NA NA NA chr3-116 144683607 144683929 180 - chr3:144683776-144683814 NA NA NA NA NA chr3-115 141526503 141526981 258 - chr3:141526833-141526871 NA NA NA NA NA chr3-114 141045787 141046339 198 - chr3:141046212-141046227 NA NA NA NA NA chr3-113 140697199 140697528 185 - chr3:140697314-140697355 NA NA NA NA NA chr3-112 140499907 140500376 249 - chr3:140500131-140500255 NA NA NA NA NA chr3-111 138511499 138511838 158 - chr3:138511684-138511718 NA NA NA NA NA chr3-110 134538679 134539183 264 - chr3:134538861-134539045 NA NA NA NA NA chr3-109 132852124 132852306 159 - chr3:132852147-132852237 NA NA NA NA NA chr3-108 131722681 131723125 264 - chr3:131722845-131723049 NA NA NA NA NA chr3-107 128755431 128755772 234 - chr3:128755431-128755558 NA NA NA NA NA chr3-106 127297644 127297989 240 - chr3:127297676-127297811 NA NA NA NA NA chr3-105 127296427 127296768 188 - chr3:127296489-127296524 NA NA NA NA NA chr3-104 126232693 126233039 261 - chr3:126232739-126232915 NA NA NA NA NA chr3-103 124677858 124678191 251 - chr3:124677957-124678126 NA NA NA NA NA chr3-7 12216930 12217295 190 - chr3:12217110-12217135 NA NA NA NA NA chr3-102 118252437 118252797 268 - chr3:118252587-118252763 NA NA NA NA NA chr3-101 118149860 118150139 167 - chr3:118149990-118150081 NA NA NA NA NA chr3-100 117800964 117801135 146 - chr3:117800985-117801056 NA NA NA NA NA chr3-99 117343997 117344452 379 - chr3:117344011-117344190 NA NA NA NA NA chr3-98 116976783 116977043 161 - chr3:116976892-116977020 NA NA NA NA NA chr3-97 116146744 116147096 181 - chr3:116146860-116146866 NA NA NA NA NA chr3-96 115574000 115574471 233 - chr3:115574303-115574428 NA NA NA NA NA chr3-95 114936621 114937117 257 - chr3:114936844-114936887 NA NA NA NA NA chr3-94 114468321 114468654 244 - chr3:114468397-114468552 NA NA NA NA NA chr3-93 112896198 112896378 156 - chr3:112896210-112896342 NA NA NA NA NA chr3-92 111769850 111770397 363 - chr3:111769983-111770143 NA NA NA NA NA chr3-91 110313481 110313815 215 - chr3:110313630-110313726 NA NA NA NA NA chr3-90 108315353 108315600 175 - chr3:108315428-108315530 NA NA NA NA NA chr3-89 108156511 108156783 216 - chr3:108156562-108156722 NA NA NA NA NA chr3-88 105731872 105732214 225 - chr3:105731920-105732106 NA NA NA NA NA chr3-87 105614774 105615247 336 - chr3:105614871-105615070 NA NA NA NA NA chr3-86 105557906 105558303 229 - chr3:105558108-105558281 NA NA NA NA NA chr3-85 105205020 105205789 356 - chr3:105205463-105205466 NA NA NA NA NA chr3 1043251 1043494 195 - chr3:1043316-1043463 NA NA NA NA NA chr3-84 104062456 104062724 160 - chr3:104062526-104062578 NA NA NA NA NA chr3-83 102781069 102781305 157 - chr3:102781111-102781144 NA NA NA NA NA chr3-82 102556612 102556895 212 - chr3:102556660-102556801 NA NA NA NA NA chr3-81 102121351 102121790 207 - chr3:102121598-102121603 NA NA NA NA NA chr2-114 99420417 99420789 152 - chr2:99420680-99420698 NA NA NA NA NA chr2-113 99050314 99050833 316 - chr2:99050510-99050623 NA NA NA NA NA chr2-112 98326070 98326367 284 - chr2:98326096-98326367 NA NA NA NA NA chr2-111 97973961 97974515 293 - chr2:97974006-97974239 NA NA NA NA NA chr2-110 89794256 89794822 289 - chr2:89794558-89794570 NA NA NA NA NA chr2-8 8743851 8744381 199 - chr2:8743893-8743912 NA NA NA NA NA chr2-109 86555285 86555573 208 - chr2:86555338-86555412 NA NA NA NA NA chr2-108 86278525 86278771 170 - chr2:86278607-86278713 NA NA NA NA NA chr2-107 85122265 85122603 234 - chr2:85122349-85122479 NA NA NA NA NA chr2-106 83270561 83270893 242 - chr2:83270629-83270841 NA NA NA NA NA chr2-105 82423810 82424413 349 - chr2:82424118-82424213 NA NA NA NA NA chr2-104 81660198 81660426 154 - chr2:81660260-81660316 NA NA NA NA NA chr2-103 81114488 81114969 250 - chr2:81114663-81114727 NA NA NA NA NA chr2-102 80721595 80721838 156 - chr2:80721694-80721821 NA NA NA NA NA chr2-101 79686824 79687274 235 - chr2:79686874-79687004 NA NA NA NA NA chr2-100 78996467 78996748 152 - chr2:78996589-78996698 NA NA NA NA NA chr2-7 7888379 7888730 190 - chr2:7888532-7888561 NA NA NA NA NA chr2-99 78088035 78088507 263 - chr2:78088140-78088183 NA NA NA NA NA chr2-98 78056710 78057166 238 - chr2:78056811-78056909 NA NA NA NA NA chr2-97 77511356 77511687 171 - chr2:77511555-77511630 NA NA NA NA NA chr2-96 77376866 77377160 169 - chr2:77376951-77377009 NA NA NA NA NA chr2-95 76326685 76326919 194 - chr2:76326737-76326891 NA NA NA NA NA chr2-94 75903896 75904612 319 - chr2:75904113-75904130 NA NA NA NA NA chr2-93 75492174 75492829 463 - chr2:75492604-75492634 NA NA NA NA NA chr2-6 7521677 7522070 280 - chr2:7521809-7521976 NA NA NA NA NA chr2-92 74859962 74860161 151 - chr2:74860037-74860140 NA NA NA NA NA chr2-91 74819711 74820087 352 - chr2:74819768-74820074 NA NA NA NA NA chr2-90 72517047 72517260 147 - chr2:72517148-72517229 NA NA NA NA NA chr2-89 72462384 72462682 156 - chr2:72462532-72462546 NA NA NA NA NA chr2-88 71115198 71115799 381 - chr2:71115396-71115557 NA NA NA NA NA chr2-87 70420558 70420857 221 - chr2:70420597-70420740 NA NA NA NA NA chr2-86 70005980 70006357 186 - chr2:70006144-70006157 NA NA NA NA NA chr2-85 69903035 69903512 288 - chr2:69903071-69903170 NA NA NA NA NA chr2-84 69364063 69364462 258 - chr2:69364155-69364366 NA NA NA NA NA chr2-83 69184110 69184414 198 - chr2:69184200-69184292 NA NA NA NA NA chr2-82 68381799 68382076 208 - chr2:68381898-68382043 NA NA NA NA NA chr2-81 67858706 67859272 259 - chr2:67858914-67858932 NA NA NA NA NA chr2-80 67125595 67126182 278 - chr2:67126061-67126098 NA NA NA NA NA chr2-79 67013639 67014182 344 - chr2:67013887-67014032 NA NA NA NA NA chr2-78 65942162 65942698 292 - chr2:65942217-65942265 NA NA NA NA NA chr2-77 64867156 64867654 321 - chr2:64867485-64867591 NA NA NA NA NA chr2-76 64531506 64531751 217 - chr2:64531551-64531740 NA NA NA NA NA chr2-75 63650296 63650729 217 - chr2:63650580-63650618 NA NA NA NA NA chr2-74 63459825 63460296 288 - chr2:63460041-63460124 NA NA NA NA NA chr2-73 63116552 63116826 160 - chr2:63116621-63116697 NA NA NA NA NA chr2-72 63065750 63066127 253 - chr2:63065877-63066004 NA NA NA NA NA chr2-71 62513214 62513567 189 - chr2:62513251-62513276 NA NA NA NA NA chr2-70 61266426 61266873 279 - chr2:61266686-61266798 NA NA NA NA NA chr2-69 61072321 61072686 207 - chr2:61072509-61072618 NA NA NA NA NA chr2-68 59893794 59894278 269 - chr2:59893940-59894040 NA NA NA NA NA chr2-67 58759743 58760052 187 - chr2:58759909-58759946 NA NA NA NA NA chr2-66 58150045 58150280 184 - chr2:58150141-58150274 NA NA NA NA NA chr2-65 57109583 57109864 193 - chr2:57109683-57109690 NA NA NA NA NA chr2-64 55837856 55838164 203 - chr2:55837898-55838038 NA NA NA NA NA chr2-5 5496049 5496418 257 - chr2:5496052-5496197 NA NA NA NA NA chr2-63 54408752 54409068 227 - chr2:54408840-54408978 NA NA NA NA NA chr2-62 54321701 54322040 237 - chr2:54321773-54321848 NA NA NA NA NA chr2-61 52805554 52805915 208 - chr2:52805719-52805766 NA NA NA NA NA chr2-60 52212723 52213099 313 - chr2:52212884-52213008 NA NA NA NA NA chr2-59 51803283 51803724 228 - chr2:51803404-51803448 NA NA NA NA NA chr2-58 51608103 51608670 324 - chr2:51608247-51608490 NA NA NA NA NA chr2-57 51582771 51583131 304 - chr2:51582865-51583113 NA NA NA NA NA chr2-56 51127014 51127882 485 - chr2:51127478-51127557 NA NA NA NA NA chr2-55 51062559 51062897 274 - chr2:51062560-51062770 NA NA NA NA NA chr2-54 51035462 51036115 291 - chr2:51035688-51035840 NA NA NA NA NA chr2-53 50672126 50672543 324 - chr2:50672176-50672405 NA NA NA NA NA chr2-52 50472914 50473375 318 - chr2:50473162-50473297 NA NA NA NA NA chr2-51 50090792 50091664 496 - chr2:50090908-50091121 NA NA NA NA NA chr2-50 49924153 49924395 230 - chr2:49924169-49924395 NA NA NA NA NA chr2-49 49767572 49767836 162 - chr2:49767672-49767732 NA NA NA NA NA chr2-48 49700815 49701373 296 - chr2:49701057-49701210 NA NA NA NA NA chr2-47 49626797 49627170 242 - chr2:49626873-49626874 NA NA NA NA NA chr2-46 48377357 48377667 157 - chr2:48377486-48377592 NA NA NA NA NA chr2-45 46616253 46616630 226 - chr2:46616368-46616375 NA NA NA NA NA chr2-4 4579159 4579593 227 - chr2:4579159-4579317 NA NA NA NA NA chr2-44 45408644 45408964 165 - chr2:45408744-45408754 NA NA NA NA NA chr2-43 44913517 44913903 201 - chr2:44913683-44913729 NA NA NA NA NA chr2-42 43574648 43574976 186 - chr2:43574801-43574867 NA NA NA NA NA chr2-41 42262960 42263543 443 - chr2:42262962-42263357 NA NA NA NA NA chr2-40 41353590 41354228 277 - chr2:41354031-41354107 NA NA NA NA NA chr2-39 41119745 41120537 320 - chr2:41120051-41120088 NA NA NA NA NA chr2-38 40652630 40652958 273 - chr2:40652686-40652906 NA NA NA NA NA chr2-37 39264586 39265139 237 - chr2:39264719-39264762 NA NA NA NA NA chr2-36 39152240 39152416 172 - chr2:39152240-39152408 NA NA NA NA NA chr2-35 38848529 38848787 197 - chr2:38848538-38848570 NA NA NA NA NA chr2-34 38087005 38087598 300 - chr2:38087295-38087302 NA NA NA NA NA chr2-33 37792678 37792992 209 - chr2:37792848-37792952 NA NA NA NA NA chr2-3 3761610 3761896 156 - chr2:3761753-3761779 NA NA NA NA NA chr2-32 37224567 37224791 154 - chr2:37224643-37224723 NA NA NA NA NA chr2-2 3705213 3705489 147 - chr2:3705330-3705423 NA NA NA NA NA chr2-31 35621798 35622131 211 - chr2:35621907-35621970 NA NA NA NA NA chr2-30 35231402 35231693 150 - chr2:35231534-35231549 NA NA NA NA NA chr2-29 28189666 28190016 179 - chr2:28189916-28189924 NA NA NA NA NA chr2-28 27006991 27007371 176 - chr2:27007172-27007183 NA NA NA NA NA chr2-27 26600924 26601467 278 - chr2:26601341-26601393 NA NA NA NA NA chr2-26 26389745 26390106 201 - chr2:26389898-26389939 NA NA NA NA NA chr2 2490115 2490731 309 - chr2:2490505-2490507 NA NA NA NA NA chr2-233 241573526 241573770 170 - chr2:241573639-241573735 NA NA NA NA NA chr2-232 241294269 241294637 204 - chr2:241294400-241294462 NA NA NA NA NA chr2-231 240331596 240331882 158 - chr2:240331643-240331727 NA NA NA NA NA chr2-230 236486905 236487360 374 - chr2:236487186-236487317 NA NA NA NA NA chr2-229 234965675 234965994 205 - chr2:234965794-234965895 NA NA NA NA NA chr2-228 234916904 234917268 187 - chr2:234916994-234917062 NA NA NA NA NA chr2-227 232683308 232683565 179 - chr2:232683428-232683529 NA NA NA NA NA chr2-226 232225368 232225819 179 - chr2:232225487-232225496 NA NA NA NA NA chr2-225 231792208 231792515 209 - chr2:231792350-231792461 NA NA NA NA NA chr2-224 231264894 231265345 197 - chr2:231265264-231265278 NA NA NA NA NA chr2-223 228052378 228052671 169 - chr2:228052565-228052610 NA NA NA NA NA chr2-222 227037843 227038318 313 - chr2:227037908-227038059 NA NA NA NA NA chr2-221 226572816 226573323 311 - chr2:226573108-226573159 NA NA NA NA NA chr2-220 226219654 226219938 206 - chr2:226219809-226219937 NA NA NA NA NA chr2-219 225696534 225696954 219 - chr2:225696641-225696659 NA NA NA NA NA chr2-25 22546451 22546714 177 - chr2:22546594-22546685 NA NA NA NA NA chr2-218 225444460 225444859 264 - chr2:225444562-225444691 NA NA NA NA NA chr2-217 225328625 225328847 147 - chr2:225328730-225328782 NA NA NA NA NA chr2-216 221931829 221932335 279 - chr2:221932224-221932276 NA NA NA NA NA chr2-24 21705087 21705593 280 - chr2:21705350-21705437 NA NA NA NA NA chr2-215 216214389 216214812 208 - chr2:216214439-216214542 NA NA NA NA NA chr2-214 215818489 215819029 305 - chr2:215818780-215818962 NA NA NA NA NA chr2-213 214912922 214913242 175 - chr2:214913049-214913091 NA NA NA NA NA chr2-212 214001412 214001864 242 - chr2:214001643-214001675 NA NA NA NA NA chr2-211 212420617 212420824 191 - chr2:212420618-212420793 NA NA NA NA NA chr2-210 212157265 212157590 266 - chr2:212157276-212157387 NA NA NA NA NA chr2-209 211740126 211740437 148 - chr2:211740259-211740264 NA NA NA NA NA chr2-208 210042039 210042364 229 - chr2:210042225-210042298 NA NA NA NA NA chr2-207 209742895 209743288 214 - chr2:209743100-209743187 NA NA NA NA NA chr2-23 20892231 20892633 240 - chr2:20892248-20892434 NA NA NA NA NA chr2-206 208445288 208445740 235 - chr2:208445539-208445557 NA NA NA NA NA chr2-22 20841314 20841501 158 - chr2:20841344-20841415 NA NA NA NA NA chr2-205 207856003 207856321 199 - chr2:207856159-207856313 NA NA NA NA NA chr2-204 206691567 206692121 331 - chr2:206691797-206691905 NA NA NA NA NA chr2-203 206149425 206149767 182 - chr2:206149543-206149593 NA NA NA NA NA chr2-202 205988247 205988449 151 - chr2:205988338-205988438 NA NA NA NA NA chr2-201 201289231 201289862 372 - chr2:201289459-201289510 NA NA NA NA NA chr2-200 199918036 199918470 221 - chr2:199918210-199918218 NA NA NA NA NA chr2-199 198649493 198649894 164 - chr2:198649574-198649659 NA NA NA NA NA chr2-198 198456113 198456658 291 - chr2:198456191-198456336 NA NA NA NA NA chr2-21 19837585 19838068 297 - chr2:19837879-19837918 NA NA NA NA NA chr2-197 198261171 198261533 211 - chr2:198261295-198261301 NA NA NA NA NA chr2-196 198100669 198101034 198 - chr2:198100748-198100779 NA NA NA NA NA chr2-195 195457793 195458189 301 - chr2:195457817-195458023 NA NA NA NA NA chr2-20 19498297 19498687 243 - chr2:19498538-19498634 NA NA NA NA NA chr2-194 193736764 193737284 334 - chr2:193736783-193736931 NA NA NA NA NA chr2-193 193332908 193333219 159 - chr2:193333092-193333099 NA NA NA NA NA chr2-19 19005260 19005754 191 - chr2:19005485-19005575 NA NA NA NA NA chr2-192 189395783 189396376 343 - chr2:189396079-189396178 NA NA NA NA NA chr2-191 188935343 188935944 259 - chr2:188935560-188935615 NA NA NA NA NA chr2-190 182094616 182095126 232 - chr2:182094954-182095028 NA NA NA NA NA chr2-189 180769993 180770313 221 - chr2:180770012-180770134 NA NA NA NA NA chr2-188 179407949 179408167 157 - chr2:179408127-179408145 NA NA NA NA NA chr2-187 179157989 179158212 169 - chr2:179158032-179158133 NA NA NA NA NA chr2-186 178722280 178722559 147 - chr2:178722413-178722428 NA NA NA NA NA chr2-185 177667525 177667944 299 - chr2:177667665-177667844 NA NA NA NA NA chr2-184 176089222 176089647 246 - chr2:176089409-176089476 NA NA NA NA NA chr2-183 175268463 175268710 225 - chr2:175268551-175268710 NA NA NA NA NA chr2-182 174171932 174172411 257 - chr2:174172213-174172248 NA NA NA NA NA chr2-181 174146649 174146980 235 - chr2:174146754-174146887 NA NA NA NA NA chr2-180 173917128 173917470 208 - chr2:173917329-173917403 NA NA NA NA NA chr2-179 172634879 172635107 155 - chr2:172635048-172635066 NA NA NA NA NA chr2-178 171819488 171819762 237 - chr2:171819636-171819762 NA NA NA NA NA chr2-18 17052125 17052716 227 - chr2:17052566-17052590 NA NA NA NA NA chr2-177 170046343 170046757 217 - chr2:170046511-170046531 NA NA NA NA NA chr2-176 169246079 169246398 187 - chr2:169246198-169246253 NA NA NA NA NA chr2-175 167467993 167468180 151 - chr2:167468086-167468163 NA NA NA NA NA chr2-174 166947103 166947354 180 - chr2:166947126-166947235 NA NA NA NA NA chr2-173 165599462 165600050 358 - chr2:165599700-165599797 NA NA NA NA NA chr2-172 165265130 165265528 275 - chr2:165265460-165265474 NA NA NA NA NA chr2-171 164768593 164768909 172 - chr2:164768717-164768841 NA NA NA NA NA chr2-170 163057465 163057750 208 - chr2:163057626-163057701 NA NA NA NA NA chr2-169 162906459 162906700 191 - chr2:162906524-162906695 NA NA NA NA NA chr2-168 161704542 161704884 200 - chr2:161704696-161704754 NA NA NA NA NA chr2-17 16169537 16170114 298 - chr2:16169881-16169900 NA NA NA NA NA chr2-167 161148985 161149584 278 - chr2:161149097-161149253 NA NA NA NA NA chr2-166 160430328 160430497 165 - chr2:160430335-160430496 NA NA NA NA NA chr2-165 159719568 159719934 148 - chr2:159719588-159719650 NA NA NA NA NA chr2-164 157430334 157430704 227 - chr2:157430476-157430560 NA NA NA NA NA chr2-163 155874891 155875200 251 - chr2:155874903-155875096 NA NA NA NA NA chr2-162 155574604 155574999 227 - chr2:155574883-155574942 NA NA NA NA NA chr2-161 155537969 155538327 222 - chr2:155537999-155538074 NA NA NA NA NA chr2-160 154788553 154789065 312 - chr2:154788587-154788699 NA NA NA NA NA chr2-159 154562980 154563198 178 - chr2:154563002-154563140 NA NA NA NA NA chr2-158 154521775 154521997 155 - chr2:154521950-154521966 NA NA NA NA NA chr2-16 15369476 15369801 228 - chr2:15369578-15369669 NA NA NA NA NA chr2-15 15350580 15350795 179 - chr2:15350676-15350779 NA NA NA NA NA chr2-157 150215216 150215529 158 - chr2:150215251-150215334 NA NA NA NA NA chr2-156 148347201 148347559 236 - chr2:148347201-148347315 NA NA NA NA NA chr2-155 146764666 146764959 176 - chr2:146764667-146764804 NA NA NA NA NA chr2-154 145692083 145692334 242 - chr2:145692110-145692325 NA NA NA NA NA chr2-153 145660081 145660340 157 - chr2:145660139-145660194 NA NA NA NA NA chr2-14 14521734 14522177 338 - chr2:14521827-14522036 NA NA NA NA NA chr2-152 143852081 143852468 226 - chr2:143852258-143852355 NA NA NA NA NA chr2-151 142781905 142782358 290 - chr2:142781978-142782105 NA NA NA NA NA chr2-150 141642039 141642264 196 - chr2:141642077-141642186 NA NA NA NA NA chr2-149 141612998 141613550 333 - chr2:141613229-141613380 NA NA NA NA NA chr2-148 141561963 141562202 170 - chr2:141562044-141562191 NA NA NA NA NA chr2-147 139402002 139402265 188 - chr2:139402218-139402237 NA NA NA NA NA chr2-146 138875501 138875821 172 - chr2:138875705-138875736 NA NA NA NA NA chr2-145 135829360 135829642 201 - chr2:135829447-135829567 NA NA NA NA NA chr2-13 13496805 13497164 199 - chr2:13496990-13497108 NA NA NA NA NA chr2-144 134547166 134547608 318 - chr2:134547314-134547492 NA NA NA NA NA chr2-12 13072880 13073169 244 - chr2:13072904-13073103 NA NA NA NA NA chr2-11 12988936 12989537 386 - chr2:12989140-12989311 NA NA NA NA NA chr2-143 127298507 127299348 345 - chr2:127298869-127298929 NA NA NA NA NA chr2-142 125964477 125964734 162 - chr2:125964601-125964668 NA NA NA NA NA chr2-141 124734393 124734841 252 - chr2:124734628-124734735 NA NA NA NA NA chr2-140 124701322 124701601 190 - chr2:124701403-124701504 NA NA NA NA NA chr2-139 124294417 124294914 166 - chr2:124294833-124294838 NA NA NA NA NA chr2-138 123417892 123418145 176 - chr2:123417982-123418081 NA NA NA NA NA chr2-137 123401918 123402374 278 - chr2:123402289-123402345 NA NA NA NA NA chr2-136 122360657 122360972 178 - chr2:122360835-122360911 NA NA NA NA NA chr2-135 121987077 121987460 241 - chr2:121987221-121987324 NA NA NA NA NA chr2-134 121938733 121939055 203 - chr2:121938862-121938884 NA NA NA NA NA chr2-133 120606327 120606538 169 - chr2:120606383-120606538 NA NA NA NA NA chr2-132 119233619 119234148 378 - chr2:119233653-119233817 NA NA NA NA NA chr2-131 118660272 118660612 264 - chr2:118660282-118660485 NA NA NA NA NA chr2-130 118146498 118147076 318 - chr2:118146691-118147017 NA NA NA NA NA chr2-129 117375263 117375579 218 - chr2:117375394-117375490 NA NA NA NA NA chr2-128 116548433 116548731 190 - chr2:116548619-116548701 NA NA NA NA NA chr2-10 11584838 11585338 303 - chr2:11585066-11585158 NA NA NA NA NA chr2-127 115628009 115628485 284 - chr2:115628155-115628399 NA NA NA NA NA chr2-126 114322389 114322639 189 - chr2:114322422-114322550 NA NA NA NA NA chr2-125 112985211 112985604 327 - chr2:112985238-112985499 NA NA NA NA NA chr2-124 112002204 112002570 194 - chr2:112002482-112002504 NA NA NA NA NA chr2-123 110655985 110656288 150 - chr2:110656114-110656213 NA NA NA NA NA chr2-122 107591045 107591236 174 - chr2:107591095-107591230 NA NA NA NA NA chr2-121 107176053 107176374 197 - chr2:107176195-107176216 NA NA NA NA NA chr2-120 102720174 102720416 205 - chr2:102720282-102720396 NA NA NA NA NA chr2-119 101832499 101832881 228 - chr2:101832611-101832713 NA NA NA NA NA chr2-118 101531294 101531641 217 - chr2:101531421-101531508 NA NA NA NA NA chr2-117 101109763 101110149 307 - chr2:101109792-101110084 NA NA NA NA NA chr2-9 10067713 10068176 282 - chr2:10068007-10068108 NA NA NA NA NA chr2-116 100588449 100588874 241 - chr2:100588702-100588713 NA NA NA NA NA chr2-115 100371689 100372225 260 - chr2:100372000-100372054 NA NA NA NA NA chr22-19 47640187 47640729 296 - chr22:47640497-47640547 NA NA NA NA NA chr22-18 45772723 45773157 316 - chr22:45772754-45772952 NA NA NA NA NA chr22-17 43668845 43669476 322 - chr22:43669131-43669198 NA NA NA NA NA chr22-16 43518042 43518533 326 - chr22:43518230-43518437 NA NA NA NA NA chr22-15 40769273 40769563 208 - chr22:40769346-40769478 NA NA NA NA NA chr22-14 35095671 35095864 164 - chr22:35095769-35095846 NA NA NA NA NA chr22-13 33240321 33240601 196 - chr22:33240433-33240545 NA NA NA NA NA chr22-12 31690515 31690964 327 - chr22:31690718-31690869 NA NA NA NA NA chr22-11 31030043 31030313 196 - chr22:31030154-31030276 NA NA NA NA NA chr22-10 30617671 30617857 169 - chr22:30617687-30617837 NA NA NA NA NA chr22-9 28592126 28592556 222 - chr22:28592302-28592338 NA NA NA NA NA chr22-8 28369085 28369682 331 - chr22:28369378-28369443 NA NA NA NA NA chr22-7 28152555 28153122 287 - chr22:28152773-28152780 NA NA NA NA NA chr22-6 27923340 27923689 215 - chr22:27923460-27923541 NA NA NA NA NA chr22-5 24333800 24333970 149 - chr22:24333837-24333965 NA NA NA NA NA chr22-4 22918146 22918544 216 - chr22:22918313-22918357 NA NA NA NA NA chr22-3 20486596 20486816 199 - chr22:20486600-20486778 NA NA NA NA NA chr22-2 19417659 19418206 316 - chr22:19417887-19417978 NA NA NA NA NA chr22 19244890 19245169 204 - chr22:19245011-19245140 NA NA NA NA NA chr21-21 34104683 34105051 247 - chr21:34104810-34104936 NA NA NA NA NA chr21-20 32354624 32354959 250 - chr21:32354689-32354814 NA NA NA NA NA chr21-19 30175857 30176238 219 - chr21:30176105-30176149 NA NA NA NA NA chr21-18 29983331 29983554 150 - chr21:29983341-29983418 NA NA NA NA NA chr21-17 29672100 29672605 293 - chr21:29672342-29672372 NA NA NA NA NA chr21-16 29585042 29585590 264 - chr21:29585274-29585292 NA NA NA NA NA chr21-15 29390431 29390808 247 - chr21:29390574-29390593 NA NA NA NA NA chr21-14 28991632 28991919 168 - chr21:28991803-28991875 NA NA NA NA NA chr21-13 28778202 28778520 210 - chr21:28778298-28778376 NA NA NA NA NA chr21-12 28749023 28749279 199 - chr21:28749120-28749262 NA NA NA NA NA chr21-11 28372747 28373189 282 - chr21:28372946-28373059 NA NA NA NA NA chr21-10 28132284 28132764 247 - chr21:28132547-28132579 NA NA NA NA NA chr21-9 27510761 27511131 248 - chr21:27510784-27510910 NA NA NA NA NA chr21-8 27244255 27244539 191 - chr21:27244258-27244356 NA NA NA NA NA chr21-7 25704572 25704835 244 - chr21:25704588-25704807 NA NA NA NA NA chr21-6 24073582 24073900 216 - chr21:24073690-24073804 NA NA NA NA NA chr21-5 22385288 22385513 200 - chr21:22385341-22385466 NA NA NA NA NA chr21-4 20558412 20558925 271 - chr21:20558604-20558633 NA NA NA NA NA chr21-3 19617183 19617702 357 - chr21:19617408-19617561 NA NA NA NA NA chr21-2 15299220 15299598 192 - chr21:15299436-15299442 NA NA NA NA NA chr21 14419028 14419340 220 - chr21:14419088-14419152 NA NA NA NA NA chr20-4 8078095 8078779 428 - chr20:8078265-8078397 NA NA NA NA NA chr20-3 6555376 6555740 237 - chr20:6555466-6555576 NA NA NA NA NA chr20-38 63153501 63153738 200 - chr20:63153529-63153618 NA NA NA NA NA chr20-37 62078998 62079214 183 - chr20:62079038-62079210 NA NA NA NA NA chr20-36 59544728 59544984 172 - chr20:59544767-59544855 NA NA NA NA NA chr20-35 59199809 59200169 222 - chr20:59199899-59199983 NA NA NA NA NA chr20-34 58767060 58767337 215 - chr20:58767184-58767286 NA NA NA NA NA chr20-33 58524296 58524570 171 - chr20:58524419-58524527 NA NA NA NA NA chr20-32 57324232 57324573 228 - chr20:57324326-57324441 NA NA NA NA NA chr20-31 54741286 54742409 636 - chr20:54741462-54741616 NA NA NA NA NA chr20-30 53119255 53119563 163 - chr20:53119434-53119452 NA NA NA NA NA chr20-29 51486259 51486660 235 - chr20:51486391-51486392 NA NA NA NA NA chr20-28 50474436 50474741 164 - chr20:50474586-50474609 NA NA NA NA NA chr20-27 49083615 49083902 188 - chr20:49083633-49083714 NA NA NA NA NA chr20-26 48290659 48290924 146 - chr20:48290771-48290784 NA NA NA NA NA chr20-25 48114441 48114737 152 - chr20:48114559-48114567 NA NA NA NA NA chr20-24 47076785 47076968 158 - chr20:47076796-47076901 NA NA NA NA NA chr20 463124 463388 155 - chr20:463146-463250 NA NA NA NA NA chr20-23 45545160 45545449 172 - chr20:45545258-45545313 NA NA NA NA NA chr20-22 45399186 45399543 257 - chr20:45399313-45399502 NA NA NA NA NA chr20-21 41531372 41532193 450 - chr20:41531961-41531991 NA NA NA NA NA chr20-20 40419582 40420074 293 - chr20:40419677-40419771 NA NA NA NA NA chr20-19 39869863 39870112 183 - chr20:39869947-39870100 NA NA NA NA NA chr20-18 39858075 39858270 180 - chr20:39858084-39858237 NA NA NA NA NA chr20-17 38518403 38518913 248 - chr20:38518698-38518710 NA NA NA NA NA chr20-16 34702785 34703095 209 - chr20:34702962-34703070 NA NA NA NA NA chr20-15 31394719 31394929 171 - chr20:31394767-31394821 NA NA NA NA NA chr20-14 25214615 25214937 168 - chr20:25214727-25214741 NA NA NA NA NA chr20-13 24755195 24755658 181 - chr20:24755505-24755522 NA NA NA NA NA chr20-12 23865004 23865358 165 - chr20:23865069-23865171 NA NA NA NA NA chr20-11 22280862 22281123 171 - chr20:22280989-22281070 NA NA NA NA NA chr20-10 18977463 18977859 253 - chr20:18977684-18977742 NA NA NA NA NA chr20-9 16900618 16900822 168 - chr20:16900640-16900744 NA NA NA NA NA chr20-8 16528860 16529575 337 - chr20:16529040-16529131 NA NA NA NA NA chr20-7 14971566 14972140 357 - chr20:14971832-14972070 NA NA NA NA NA chr20-2 1357469 1357739 175 - chr20:1357681-1357683 NA NA NA NA NA chr20-6 11593321 11593536 158 - chr20:11593351-11593490 NA NA NA NA NA chr20-5 11315396 11315752 216 - chr20:11315489-11315565 NA NA NA NA NA chr1-60 99640122 99640722 377 - chr1:99640231-99640461 NA NA NA NA NA chr1-59 98345047 98345533 279 - chr1:98345073-98345263 NA NA NA NA NA chr1-58 97264701 97265114 213 - chr1:97264984-97264997 NA NA NA NA NA chr1-57 96957324 96957503 161 - chr1:96957325-96957434 NA NA NA NA NA chr1-56 95222850 95223320 371 - chr1:95222983-95223273 NA NA NA NA NA chr1-55 94513606 94513902 253 - chr1:94513680-94513890 NA NA NA NA NA chr1-54 93524052 93524268 160 - chr1:93524105-93524203 NA NA NA NA NA chr1-53 92887902 92888107 199 - chr1:92887907-92888088 NA NA NA NA NA chr1-52 92714187 92714490 217 - chr1:92714206-92714337 NA NA NA NA NA chr1-51 91073466 91073733 156 - chr1:91073576-91073621 NA NA NA NA NA chr1-50 90977586 90978093 284 - chr1:90977656-90977717 NA NA NA NA NA chr1-49 89379955 89380328 217 - chr1:89380043-89380208 NA NA NA NA NA chr1-48 88474875 88475282 186 - chr1:88474946-88475011 NA NA NA NA NA chr1-47 88396287 88396573 188 - chr1:88396319-88396409 NA NA NA NA NA chr1-46 87759068 87759431 308 - chr1:87759162-87759389 NA NA NA NA NA chr1-45 87072538 87072929 326 - chr1:87072630-87072891 NA NA NA NA NA chr1-44 86450011 86450365 214 - chr1:86450095-86450169 NA NA NA NA NA chr1-43 86354091 86354447 237 - chr1:86354217-86354340 NA NA NA NA NA chr1-42 85681253 85681696 304 - chr1:85681426-85681591 NA NA NA NA NA chr1-41 84703424 84703722 203 - chr1:84703572-84703680 NA NA NA NA NA chr1-40 83882450 83882775 209 - chr1:83882663-83882756 NA NA NA NA NA chr1-39 82095819 82096260 239 - chr1:82096087-82096124 NA NA NA NA NA chr1-38 80033753 80034379 246 - chr1:80034254-80034362 NA NA NA NA NA chr1-37 79834576 79834995 216 - chr1:79834668-79834669 NA NA NA NA NA chr1-36 79793706 79794091 193 - chr1:79793910-79793911 NA NA NA NA NA chr1-35 79244953 79245418 233 - chr1:79245264-79245395 NA NA NA NA NA chr1-34 76909426 76909846 246 - chr1:76909729-76909801 NA NA NA NA NA chr1-33 76725615 76725876 169 - chr1:76725695-76725748 NA NA NA NA NA chr1-32 76552705 76553046 186 - chr1:76552845-76552846 NA NA NA NA NA chr1-31 74659878 74660659 398 - chr1:74659903-74659967 NA NA NA NA NA chr1-30 74537761 74538008 159 - chr1:74537933-74537948 NA NA NA NA NA chr1-29 72346567 72346946 294 - chr1:72346624-72346833 NA NA NA NA NA chr1-28 70520688 70521083 236 - chr1:70520949-70521026 NA NA NA NA NA chr1-27 69318274 69318812 310 - chr1:69318573-69318655 NA NA NA NA NA chr1-26 62558894 62559232 224 - chr1:62559032-62559218 NA NA NA NA NA chr1-25 61849890 61850498 342 - chr1:61850152-61850228 NA NA NA NA NA chr1-24 61504937 61505431 329 - chr1:61505056-61505218 NA NA NA NA NA chr1-23 61097741 61098128 235 - chr1:61097919-61098002 NA NA NA NA NA chr1-22 60232204 60232563 188 - chr1:60232271-60232288 NA NA NA NA NA chr1-21 59172007 59172341 267 - chr1:59172056-59172268 NA NA NA NA NA chr1-20 56170120 56170476 172 - chr1:56170193-56170255 NA NA NA NA NA chr1-19 51842387 51842713 215 - chr1:51842477-51842539 NA NA NA NA NA chr1-18 51418018 51418221 160 - chr1:51418025-51418142 NA NA NA NA NA chr1-17 50172219 50172813 309 - chr1:50172582-50172796 NA NA NA NA NA chr1-16 45957446 45957734 174 - chr1:45957556-45957578 NA NA NA NA NA chr1-15 44176202 44176523 236 - chr1:44176203-44176410 NA NA NA NA NA chr1-14 44164775 44165219 205 - chr1:44165028-44165036 NA NA NA NA NA chr1-13 42935542 42936040 210 - chr1:42935653-42935767 NA NA NA NA NA chr1-12 40152873 40153184 207 - chr1:40153049-40153152 NA NA NA NA NA chr1-11 39236416 39236758 213 - chr1:39236441-39236525 NA NA NA NA NA chr1-10 38887021 38887401 149 - chr1:38887111-38887123 NA NA NA NA NA chr1-9 37647148 37647406 240 - chr1:37647200-37647386 NA NA NA NA NA chr1-8 31785510 31785960 252 - chr1:31785828-31785914 NA NA NA NA NA chr1-7 30670079 30670467 226 - chr1:30670281-30670425 NA NA NA NA NA chr1-6 29663917 29664240 286 - chr1:29664033-29664208 NA NA NA NA NA chr1-154 246319360 246319694 265 - chr1:246319419-246319615 NA NA NA NA NA chr1-5 24408605 24408979 240 - chr1:24408829-24408875 NA NA NA NA NA chr1-153 241970092 241970506 258 - chr1:241970276-241970451 NA NA NA NA NA chr1-152 241373759 241374155 205 - chr1:241374011-241374096 NA NA NA NA NA chr1-151 240638099 240638940 384 - chr1:240638488-240638586 NA NA NA NA NA chr1-150 237414834 237415073 155 - chr1:237414940-237415055 NA NA NA NA NA chr1-149 236941038 236941327 199 - chr1:236941156-236941265 NA NA NA NA NA chr1-148 235858054 235858569 357 - chr1:235858090-235858312 NA NA NA NA NA chr1-147 235789546 235790143 371 - chr1:235789755-235789866 NA NA NA NA NA chr1-146 234614064 234614394 249 - chr1:234614183-234614351 NA NA NA NA NA chr1-145 234070107 234070417 238 - chr1:234070158-234070324 NA NA NA NA NA chr1-144 230229522 230229840 198 - chr1:230229678-230229732 NA NA NA NA NA chr1-143 229392925 229393132 147 - chr1:229392945-229393032 NA NA NA NA NA chr1-142 227098556 227099129 324 - chr1:227098898-227098973 NA NA NA NA NA chr1-4 22500666 22501171 242 - chr1:22500998-22501046 NA NA NA NA NA chr1-141 221965377 221965920 267 - chr1:221965569-221965616 NA NA NA NA NA chr1-140 221798932 221799333 253 - chr1:221799176-221799217 NA NA NA NA NA chr1-139 217709893 217710130 206 - chr1:217709948-217710123 NA NA NA NA NA chr1-138 215554445 215554798 215 - chr1:215554651-215554728 NA NA NA NA NA chr1-137 215545874 215546540 386 - chr1:215545990-215546130 NA NA NA NA NA chr1-136 213638225 213638692 253 - chr1:213638376-213638457 NA NA NA NA NA chr1-135 212944410 212944664 156 - chr1:212944455-212944513 NA NA NA NA NA chr1-134 211800414 211800810 201 - chr1:211800670-211800676 NA NA NA NA NA chr1-3 21068414 21068739 239 - chr1:21068485-21068638 NA NA NA NA NA chr1-2 20951092 20951522 233 - chr1:20951319-20951406 NA NA NA NA NA chr1 20761724 20762159 287 - chr1:20761737-20761820 NA NA NA NA NA chr1-133 206849325 206849577 214 - chr1:206849418-206849560 NA NA NA NA NA chr1-132 206120229 206120635 220 - chr1:206120377-206120411 NA NA NA NA NA chr1-131 203948408 203948674 170 - chr1:203948508-203948582 NA NA NA NA NA chr1-130 203480293 203480724 242 - chr1:203480454-203480507 NA NA NA NA NA chr1-129 202694204 202694514 189 - chr1:202694425-202694493 NA NA NA NA NA chr1-128 201267019 201267326 279 - chr1:201267049-201267304 NA NA NA NA NA chr1-127 200636087 200636349 204 - chr1:200636280-200636336 NA NA NA NA NA chr1-126 198768246 198768518 209 - chr1:198768331-198768477 NA NA NA NA NA chr1-125 198247501 198247721 185 - chr1:198247548-198247698 NA NA NA NA NA chr1-124 197343386 197344017 400 - chr1:197343746-197343906 NA NA NA NA NA chr1-123 196012887 196013550 322 - chr1:196013095-196013202 NA NA NA NA NA chr1-122 195931039 195931788 363 - chr1:195931188-195931289 NA NA NA NA NA chr1-121 194181080 194181639 231 - chr1:194181237-194181254 NA NA NA NA NA chr1-120 193861249 193861638 236 - chr1:193861360-193861443 NA NA NA NA NA chr1-119 192772214 192772457 228 - chr1:192772214-192772427 NA NA NA NA NA chr1-118 192381565 192382100 212 - chr1:192381948-192381957 NA NA NA NA NA chr1-117 192330590 192330800 153 - chr1:192330619-192330659 NA NA NA NA NA chr1-116 189940661 189941283 394 - chr1:189940863-189941029 NA NA NA NA NA chr1-115 188650333 188650665 313 - chr1:188650336-188650630 NA NA NA NA NA chr1-114 188590313 188590765 199 - chr1:188590431-188590516 NA NA NA NA NA chr1-113 187698970 187699262 152 - chr1:187699091-187699103 NA NA NA NA NA chr1-112 187419535 187419817 160 - chr1:187419693-187419707 NA NA NA NA NA chr1-111 184444700 184445227 296 - chr1:184445002-184445209 NA NA NA NA NA chr1-110 181621557 181621867 204 - chr1:181621624-181621722 NA NA NA NA NA chr1-109 180658632 180659153 302 - chr1:180658909-180659006 NA NA NA NA NA chr1-108 180331725 180331926 164 - chr1:180331740-180331823 NA NA NA NA NA chr1-107 178418204 178418449 151 - chr1:178418274-178418339 NA NA NA NA NA chr1-106 177937910 177938225 199 - chr1:177938034-177938117 NA NA NA NA NA chr1-105 176770383 176770665 190 - chr1:176770494-176770630 NA NA NA NA NA chr1-104 176167112 176167631 358 - chr1:176167180-176167303 NA NA NA NA NA chr1-103 173636584 173636973 205 - chr1:173636755-173636776 NA NA NA NA NA chr1-102 171332491 171332831 188 - chr1:171332736-171332772 NA NA NA NA NA chr1-101 169764760 169765198 291 - chr1:169764939-169765011 NA NA NA NA NA chr1-100 166918811 166919157 187 - chr1:166919066-166919094 NA NA NA NA NA chr1-99 165877313 165877801 245 - chr1:165877325-165877489 NA NA NA NA NA chr1-98 163112451 163112786 262 - chr1:163112577-163112620 NA NA NA NA NA chr1-97 162587074 162587360 170 - chr1:162587151-162587205 NA NA NA NA NA chr1-96 161414136 161414551 268 - chr1:161414182-161414303 NA NA NA NA NA chr1-95 161194851 161195276 235 - chr1:161194972-161195017 NA NA NA NA NA chr1-94 160501073 160501665 302 - chr1:160501348-160501370 NA NA NA NA NA chr1-93 159502947 159503216 176 - chr1:159503062-159503189 NA NA NA NA NA chr1-92 159344543 159344843 247 - chr1:159344583-159344777 NA NA NA NA NA chr1-91 153178003 153178385 222 - chr1:153178141-153178203 NA NA NA NA NA chr1-90 151783046 151783468 264 - chr1:151783337-151783443 NA NA NA NA NA chr1-89 151575472 151576010 329 - chr1:151575516-151575746 NA NA NA NA NA chr1-88 151295402 151295717 200 - chr1:151295511-151295584 NA NA NA NA NA chr1-87 150574952 150575211 223 - chr1:150574976-150575163 NA NA NA NA NA chr1-86 149911460 149912267 475 - chr1:149911938-149912081 NA NA NA NA NA chr1-85 147846344 147846594 172 - chr1:147846394-147846488 NA NA NA NA NA chr1-84 143263017 143264149 669 - chr1:143263504-143263650 NA NA NA NA NA chr1-83 118220483 118220751 183 - chr1:118220490-118220588 NA NA NA NA NA chr1-82 115736950 115737202 187 - chr1:115737019-115737141 NA NA NA NA NA chr1-81 113874494 113874870 230 - chr1:113874610-113874617 NA NA NA NA NA chr1-80 112542847 112543141 225 - chr1:112542983-112543139 NA NA NA NA NA chr1-79 112535400 112535773 238 - chr1:112535474-112535667 NA NA NA NA NA chr1-78 112428228 112428704 216 - chr1:112428256-112428381 NA NA NA NA NA chr1-77 111810572 111810907 207 - chr1:111810630-111810709 NA NA NA NA NA chr1-76 111157414 111157612 172 - chr1:111157415-111157561 NA NA NA NA NA chr1-75 108986064 108986520 277 - chr1:108986222-108986278 NA NA NA NA NA chr1-74 108777892 108778207 219 - chr1:108778022-108778127 NA NA NA NA NA chr1-73 108704809 108705098 175 - chr1:108704909-108704970 NA NA NA NA NA chr1-72 107759607 107760080 322 - chr1:107759677-107759848 NA NA NA NA NA chr1-71 106534684 106535024 322 - chr1:106534710-106535014 NA NA NA NA NA chr1-70 105597077 105597570 240 - chr1:105597401-105597428 NA NA NA NA NA chr1-69 105495764 105496028 152 - chr1:105495798-105495890 NA NA NA NA NA chr1-68 105054263 105054649 266 - chr1:105054416-105054644 NA NA NA NA NA chr1-67 102668408 102668847 271 - chr1:102668639-102668700 NA NA NA NA NA chr1-66 101966669 101967086 187 - chr1:101966931-101966952 NA NA NA NA NA chr1-65 101763199 101763508 217 - chr1:101763342-101763433 NA NA NA NA NA chr1-64 100970896 100971332 156 - chr1:100971279-100971290 NA NA NA NA NA chr1-63 100717631 100718012 242 - chr1:100717707-100717810 NA NA NA NA NA chr1-62 100222221 100222460 149 - chr1:100222264-100222323 NA NA NA NA NA chr1-61 100211299 100211628 168 - chr1:100211451-100211464 NA NA NA NA NA chr19 9173005 9173255 177 - chr19:9173090-9173218 NA NA NA NA NA chr19-15 52113831 52114293 310 - chr19:52113937-52114095 NA NA NA NA NA chr19-14 51999785 52000279 342 - chr19:51999952-52000142 NA NA NA NA NA chr19-13 50971923 50972588 333 - chr19:50972294-50972373 NA NA NA NA NA chr19-12 46151894 46152254 214 - chr19:46152121-46152135 NA NA NA NA NA chr19-11 44229100 44229327 185 - chr19:44229143-44229286 NA NA NA NA NA chr19-10 37722745 37723012 237 - chr19:37722782-37722989 NA NA NA NA NA chr19-9 36673657 36673942 196 - chr19:36673760-36673867 NA NA NA NA NA chr19-8 32954940 32955140 182 - chr19:32954974-32955138 NA NA NA NA NA chr19-7 32439863 32440678 399 - chr19:32440210-32440241 NA NA NA NA NA chr19-6 30858640 30859017 262 - chr19:30858833-30858980 NA NA NA NA NA chr19-5 28340422 28340788 273 - chr19:28340611-28340779 NA NA NA NA NA chr19-4 15031182 15031601 302 - chr19:15031425-15031526 NA NA NA NA NA chr19-3 12383330 12383585 223 - chr19:12383343-12383534 NA NA NA NA NA chr19-2 12240630 12241029 210 - chr19:12240829-12240850 NA NA NA NA NA chr18-14 9533574 9533800 176 - chr18:9533603-9533743 NA NA NA NA NA chr18-13 9100797 9101113 171 - chr18:9100963-9100973 NA NA NA NA NA chr18-12 8033281 8033549 204 - chr18:8033336-8033485 NA NA NA NA NA chr18-41 79811035 79811309 161 - chr18:79811119-79811149 NA NA NA NA NA chr18-40 74142656 74142915 181 - chr18:74142755-74142844 NA NA NA NA NA chr18-39 73306911 73307439 298 - chr18:73307235-73307303 NA NA NA NA NA chr18-38 72590813 72591289 287 - chr18:72591158-72591256 NA NA NA NA NA chr18 715441 715632 160 - chr18:715508-715613 NA NA NA NA NA chr18-37 71358671 71358968 167 - chr18:71358794-71358831 NA NA NA NA NA chr18-36 70900621 70901099 298 - chr18:70900721-70900959 NA NA NA NA NA chr18-35 70218243 70218545 163 - chr18:70218407-70218431 NA NA NA NA NA chr18-34 70115409 70115887 405 - chr18:70115533-70115865 NA NA NA NA NA chr18-11 6999878 7000305 268 - chr18:7000114-7000223 NA NA NA NA NA chr18-33 67821894 67822135 155 - chr18:67821917-67822028 NA NA NA NA NA chr18-32 67808782 67809035 213 - chr18:67808783-67808956 NA NA NA NA NA chr18-31 66813015 66813388 159 - chr18:66813217-66813246 NA NA NA NA NA chr18-30 65156651 65157083 320 - chr18:65156651-65156859 NA NA NA NA NA chr18-29 64250306 64250637 261 - chr18:64250363-64250554 NA NA NA NA NA chr18-28 64168315 64168910 314 - chr18:64168719-64168752 NA NA NA NA NA chr18-10 6248762 6249186 199 - chr18:6249073-6249185 NA NA NA NA NA chr18-27 62028787 62029238 234 - chr18:62028830-62028963 NA NA NA NA NA chr18-26 61254419 61254781 226 - chr18:61254660-61254680 NA NA NA NA NA chr18-25 61246856 61247124 198 - chr18:61246953-61247081 NA NA NA NA NA chr18-24 60787125 60787421 155 - chr18:60787170-60787191 NA NA NA NA NA chr18-23 54277707 54278017 235 - chr18:54277788-54277948 NA NA NA NA NA chr18-22 52994104 52994553 176 - chr18:52994224-52994229 NA NA NA NA NA chr18-21 52165474 52165656 147 - chr18:52165530-52165642 NA NA NA NA NA chr18-9 4767741 4768167 246 - chr18:4767776-4767842 NA NA NA NA NA chr18-8 4073246 4073713 240 - chr18:4073272-4073419 NA NA NA NA NA chr18-7 3949976 3950337 239 - chr18:3950136-3950253 NA NA NA NA NA chr18-20 37350493 37350725 148 - chr18:37350531-37350651 NA NA NA NA NA chr18-6 3513243 3513501 198 - chr18:3513313-3513451 NA NA NA NA NA chr18-19 35064064 35064368 222 - chr18:35064089-35064267 NA NA NA NA NA chr18-5 3459985 3460617 352 - chr18:3460231-3460235 NA NA NA NA NA chr18-4 2933219 2933680 240 - chr18:2933337-2933434 NA NA NA NA NA chr18-18 29156529 29156756 190 - chr18:29156554-29156683 NA NA NA NA NA chr18-17 28336787 28337098 216 - chr18:28336962-28337083 NA NA NA NA NA chr18-3 2797216 2797639 234 - chr18:2797512-2797571 NA NA NA NA NA chr18-2 2511330 2511731 346 - chr18:2511361-2511652 NA NA NA NA NA chr18-16 24154722 24155067 251 - chr18:24154837-24154994 NA NA NA NA NA chr18-15 13202157 13202439 205 - chr18:13202157-13202285 NA NA NA NA NA chr17-49 83145123 83145431 258 - chr17:83145199-83145407 NA NA NA NA NA chr17-48 81603702 81604054 270 - chr17:81603793-81603975 NA NA NA NA NA chr17-47 81015727 81015954 195 - chr17:81015736-81015853 NA NA NA NA NA chr17-46 80731582 80731905 240 - chr17:80731717-80731874 NA NA NA NA NA chr17-45 78116339 78116635 181 - chr17:78116455-78116523 NA NA NA NA NA chr17-44 77848986 77849290 192 - chr17:77849088-77849148 NA NA NA NA NA chr17-43 77611914 77612312 228 - chr17:77612123-77612259 NA NA NA NA NA chr17-42 73714968 73715261 173 - chr17:73715123-73715176 NA NA NA NA NA chr17-41 71102624 71102809 161 - chr17:71102717-71102808 NA NA NA NA NA chr17-40 70801803 70802079 199 - chr17:70801932-70802054 NA NA NA NA NA chr17-39 70745745 70746479 250 - chr17:70746075-70746107 NA NA NA NA NA chr17-38 69863627 69863977 200 - chr17:69863840-69863848 NA NA NA NA NA chr17-37 69388311 69388618 203 - chr17:69388346-69388491 NA NA NA NA NA chr17-36 69086696 69087222 279 - chr17:69086907-69086939 NA NA NA NA NA chr17-35 67645219 67645580 159 - chr17:67645444-67645478 NA NA NA NA NA chr17-34 66035833 66036494 275 - chr17:66036302-66036357 NA NA NA NA NA chr17-33 65975448 65975702 197 - chr17:65975508-65975648 NA NA NA NA NA chr17-32 65452001 65452472 258 - chr17:65452091-65452278 NA NA NA NA NA chr17-31 64516062 64516425 262 - chr17:64516183-64516344 NA NA NA NA NA chr17-30 63212746 63213058 177 - chr17:63212930-63212972 NA NA NA NA NA chr17-29 63143483 63143803 316 - chr17:63143490-63143802 NA NA NA NA NA chr17-28 61925574 61925879 243 - chr17:61925663-61925720 NA NA NA NA NA chr17-27 61516762 61517077 196 - chr17:61516878-61516949 NA NA NA NA NA chr17-26 61361036 61361608 271 - chr17:61361086-61361127 NA NA NA NA NA chr17-25 61305823 61306271 228 - chr17:61305962-61305970 NA NA NA NA NA chr17-24 60808322 60808610 242 - chr17:60808335-60808439 NA NA NA NA NA chr17-23 60664555 60665083 313 - chr17:60664557-60664655 NA NA NA NA NA chr17-22 60464026 60464516 278 - chr17:60464393-60464465 NA NA NA NA NA chr17-21 59606922 59607289 257 - chr17:59606991-59607022 NA NA NA NA NA chr17-20 59305185 59305385 191 - chr17:59305199-59305363 NA NA NA NA NA chr17-19 58546353 58546772 197 - chr17:58546470-58546515 NA NA NA NA NA chr17-18 58102631 58102966 233 - chr17:58102762-58102951 NA NA NA NA NA chr17-17 57629017 57629274 197 - chr17:57629065-57629202 NA NA NA NA NA chr17-16 57135778 57135998 166 - chr17:57135823-57135935 NA NA NA NA NA chr17-15 56513566 56513894 210 - chr17:56513739-56513831 NA NA NA NA NA chr17-14 56441360 56441669 237 - chr17:56441469-56441634 NA NA NA NA NA chr17-13 55761488 55761774 249 - chr17:55761594-55761732 NA NA NA NA NA chr17-12 54398962 54399265 218 - chr17:54399065-54399198 NA NA NA NA NA chr17-11 54193396 54193754 238 - chr17:54193598-54193650 NA NA NA NA NA chr17-10 53241285 53241753 306 - chr17:53241400-53241450 NA NA NA NA NA chr17-9 51418785 51419129 271 - chr17:51418785-51418837 NA NA NA NA NA chr17-8 47130167 47130473 232 - chr17:47130292-47130416 NA NA NA NA NA chr17-7 43003453 43003675 170 - chr17:43003559-43003641 NA NA NA NA NA chr17-6 42473003 42473242 166 - chr17:42473086-42473199 NA NA NA NA NA chr17-5 32133577 32133824 152 - chr17:32133724-32133745 NA NA NA NA NA chr17-4 29765196 29765755 210 - chr17:29765241-29765293 NA NA NA NA NA chr17-3 28809159 28809599 244 - chr17:28809418-28809592 NA NA NA NA NA chr17-2 27216046 27216469 237 - chr17:27216132-27216183 NA NA NA NA NA chr17 11883819 11884188 237 - chr17:11883903-11884096 NA NA NA NA NA chr16-6 9335048 9335379 176 - chr16:9335236-9335257 NA NA NA NA NA chr16-36 86680113 86680468 260 - chr16:86680280-86680397 NA NA NA NA NA chr16-35 85780806 85781047 191 - chr16:85780846-85780967 NA NA NA NA NA chr16-34 83924287 83924796 177 - chr16:83924370-83924381 NA NA NA NA NA chr16-5 8253205 8253510 248 - chr16:8253271-8253462 NA NA NA NA NA chr16-33 82043718 82044037 176 - chr16:82043872-82043894 NA NA NA NA NA chr16-32 81569091 81569438 231 - chr16:81569191-81569274 NA NA NA NA NA chr16-31 77966580 77966915 215 - chr16:77966640-77966775 NA NA NA NA NA chr16-30 77311142 77311610 236 - chr16:77311405-77311471 NA NA NA NA NA chr16-29 76668421 76668813 276 - chr16:76668518-76668666 NA NA NA NA NA chr16-28 76426303 76426631 208 - chr16:76426517-76426605 NA NA NA NA NA chr16-27 76339559 76339888 210 - chr16:76339639-76339730 NA NA NA NA NA chr16-26 75741283 75741748 242 - chr16:75741449-75741468 NA NA NA NA NA chr16-4 7535606 7535918 236 - chr16:7535647-7535737 NA NA NA NA NA chr16-25 74199634 74199847 191 - chr16:74199657-74199828 NA NA NA NA NA chr16-24 72717265 72717500 152 - chr16:72717342-72717411 NA NA NA NA NA chr16-23 72501945 72502196 207 - chr16:72502021-72502184 NA NA NA NA NA chr16-22 70290940 70291166 200 - chr16:70290970-70291144 NA NA NA NA NA chr16-21 67941118 67941504 157 - chr16:67941395-67941419 NA NA NA NA NA chr16-3 6396515 6396943 217 - chr16:6396752-6396810 NA NA NA NA NA chr16-20 63838308 63838739 285 - chr16:63838487-63838692 NA NA NA NA NA chr16-2 6354248 6354885 265 - chr16:6354365-6354428 NA NA NA NA NA chr16-19 63507887 63508152 148 - chr16:63507938-63508047 NA NA NA NA NA chr16-18 61519206 61519471 176 - chr16:61519381-61519468 NA NA NA NA NA chr16 5701853 5702126 157 - chr16:5701981-5702046 NA NA NA NA NA chr16-17 54050013 54050344 164 - chr16:54050192-54050213 NA NA NA NA NA chr16-16 51810462 51810802 229 - chr16:51810527-51810607 NA NA NA NA NA chr16-15 51082804 51083148 285 - chr16:51082863-51083089 NA NA NA NA NA chr16-14 50443344 50443669 195 - chr16:50443454-50443479 NA NA NA NA NA chr16-13 35191902 35192155 190 - chr16:35192028-35192155 NA NA NA NA NA chr16-12 26430748 26430945 181 - chr16:26430764-26430929 NA NA NA NA NA chr16-11 26388886 26389134 168 - chr16:26388972-26389072 NA NA NA NA NA chr16-10 21941661 21941919 195 - chr16:21941853-21941899 NA NA NA NA NA chr16-9 20371216 20371643 270 - chr16:20371442-20371555 NA NA NA NA NA chr16-8 13922745 13923154 237 - chr16:13923018-13923118 NA NA NA NA NA chr16-7 11315339 11315800 305 - chr16:11315613-11315762 NA NA NA NA NA chr15-36 99524136 99524506 263 - chr15:99524155-99524381 NA NA NA NA NA chr15-35 99334694 99335217 316 - chr15:99334947-99334972 NA NA NA NA NA chr15-34 91402310 91402526 147 - chr15:91402343-91402445 NA NA NA NA NA chr15-33 89147757 89147954 146 - chr15:89147791-89147852 NA NA NA NA NA chr15-32 86274341 86274567 166 - chr15:86274353-86274499 NA NA NA NA NA chr15-31 83684514 83684854 253 - chr15:83684621-83684827 NA NA NA NA NA chr15-30 81743501 81744183 351 - chr15:81743832-81743852 NA NA NA NA NA chr15-29 81654245 81654629 313 - chr15:81654409-81654589 NA NA NA NA NA chr15-28 81353579 81353868 180 - chr15:81353680-81353769 NA NA NA NA NA chr15-27 80997925 80998213 173 - chr15:80997968-80998026 NA NA NA NA NA chr15-26 80381701 80382044 280 - chr15:80381760-80381977 NA NA NA NA NA chr15-25 75876323 75876609 260 - chr15:75876377-75876559 NA NA NA NA NA chr15-24 75365848 75366074 157 - chr15:75365897-75366031 NA NA NA NA NA chr15-23 70001188 70001692 253 - chr15:70001480-70001564 NA NA NA NA NA chr15-22 69180605 69180933 236 - chr15:69180754-69180898 NA NA NA NA NA chr15-21 68856867 68857172 219 - chr15:68856950-68857085 NA NA NA NA NA chr15-20 67361082 67361588 308 - chr15:67361305-67361465 NA NA NA NA NA chr15-19 62109195 62109460 185 - chr15:62109225-62109330 NA NA NA NA NA chr15-18 61421046 61421305 161 - chr15:61421097-61421160 NA NA NA NA NA chr15-17 61418686 61419181 240 - chr15:61418893-61419048 NA NA NA NA NA chr15-16 60326536 60326818 155 - chr15:60326693-60326721 NA NA NA NA NA chr15-15 59933194 59933727 360 - chr15:59933475-59933662 NA NA NA NA NA chr15-14 58132808 58133291 226 - chr15:58133155-58133219 NA NA NA NA NA chr15-13 57047140 57047367 183 - chr15:57047208-57047347 NA NA NA NA NA chr15-12 56577603 56577961 185 - chr15:56577688-56577700 NA NA NA NA NA chr15-11 52618863 52619178 166 - chr15:52619083-52619100 NA NA NA NA NA chr15-10 52359682 52360072 212 - chr15:52359827-52359861 NA NA NA NA NA chr15-9 50131382 50131696 200 - chr15:50131496-50131658 NA NA NA NA NA chr15-8 49541168 49541943 355 - chr15:49541643-49541714 NA NA NA NA NA chr15-7 44381390 44381773 231 - chr15:44381565-44381690 NA NA NA NA NA chr15-6 25604565 25604847 148 - chr15:25604638-25604652 NA NA NA NA NA chr15-5 25113905 25114233 202 - chr15:25113937-25114013 NA NA NA NA NA chr15-4 23903826 23904322 325 - chr15:23903948-23904102 NA NA NA NA NA chr15-3 23692645 23692898 161 - chr15:23692784-23692853 NA NA NA NA NA chr15-2 23568477 23568697 147 - chr15:23568553-23568633 NA NA NA NA NA chr15 23474393 23474824 259 - chr15:23474598-23474687 NA NA NA NA NA chr15-39 100283774 100284404 245 - chr15:100284154-100284279 NA NA NA NA NA chr15-38 100197075 100197395 209 - chr15:100197174-100197346 NA NA NA NA NA chr15-37 100039708 100040227 329 - chr15:100039909-100040070 NA NA NA NA NA chr14-88 88401647 88401975 190 - chr14:88401897-88401949 NA NA NA NA NA chr14-87 86770621 86771349 353 - chr14:86771117-86771224 NA NA NA NA NA chr14-86 86037260 86037752 279 - chr14:86037413-86037479 NA NA NA NA NA chr14-85 85820664 85820950 154 - chr14:85820756-85820866 NA NA NA NA NA chr14-84 84239976 84240295 205 - chr14:84239977-84240144 NA NA NA NA NA chr14-83 83533474 83533809 307 - chr14:83533491-83533770 NA NA NA NA NA chr14-82 81976255 81976624 153 - chr14:81976506-81976513 NA NA NA NA NA chr14-81 81146189 81146703 346 - chr14:81146462-81146570 NA NA NA NA NA chr14-80 80818701 80819199 346 - chr14:80818797-80818879 NA NA NA NA NA chr14-79 75665914 75666121 164 - chr14:75665967-75666088 NA NA NA NA NA chr14-78 73317070 73317863 301 - chr14:73317770-73317816 NA NA NA NA NA chr14-77 72814648 72815109 246 - chr14:72814907-72814912 NA NA NA NA NA chr14-76 72633869 72634184 244 - chr14:72633870-72634043 NA NA NA NA NA chr14-75 72343962 72344240 203 - chr14:72344026-72344154 NA NA NA NA NA chr14-74 72071263 72071616 183 - chr14:72071409-72071438 NA NA NA NA NA chr14-73 72016122 72016714 344 - chr14:72016408-72016504 NA NA NA NA NA chr14-72 71946589 71947094 315 - chr14:71946671-71946772 NA NA NA NA NA chr14-71 71693937 71694190 174 - chr14:71693974-71694069 NA NA NA NA NA chr14-70 71620855 71621323 246 - chr14:71620916-71620940 NA NA NA NA NA chr14-69 71572644 71572888 240 - chr14:71572644-71572880 NA NA NA NA NA chr14-68 71159567 71159906 198 - chr14:71159800-71159857 NA NA NA NA NA chr14-67 71054785 71055165 280 - chr14:71054957-71055137 NA NA NA NA NA chr14-66 70559733 70560033 158 - chr14:70559893-70559945 NA NA NA NA NA chr14-65 70224239 70224562 207 - chr14:70224288-70224379 NA NA NA NA NA chr14-64 70066884 70067093 153 - chr14:70066996-70067093 NA NA NA NA NA chr14-63 69425976 69426205 199 - chr14:69426078-69426187 NA NA NA NA NA chr14-62 68359828 68360121 207 - chr14:68359925-68360068 NA NA NA NA NA chr14-61 67702025 67702543 221 - chr14:67702391-67702405 NA NA NA NA NA chr14-60 66562312 66562659 211 - chr14:66562464-66562532 NA NA NA NA NA chr14-59 66373544 66373798 200 - chr14:66373618-66373764 NA NA NA NA NA chr14-58 66227022 66227310 147 - chr14:66227146-66227164 NA NA NA NA NA chr14-57 64946130 64946570 306 - chr14:64946332-64946504 NA NA NA NA NA chr14-56 63348856 63349261 187 - chr14:63348911-63348930 NA NA NA NA NA chr14-55 63222978 63223335 255 - chr14:63223247-63223330 NA NA NA NA NA chr14-54 62917796 62918220 175 - chr14:62917815-62917907 NA NA NA NA NA chr14-53 62435299 62435782 257 - chr14:62435330-62435501 NA NA NA NA NA chr14-52 62313144 62313361 179 - chr14:62313173-62313296 NA NA NA NA NA chr14-51 61965761 61966311 282 - chr14:61966075-61966181 NA NA NA NA NA chr14-50 61660519 61660695 170 - chr14:61660531-61660695 NA NA NA NA NA chr14-49 61582619 61582902 162 - chr14:61582734-61582775 NA NA NA NA NA chr14-48 60503686 60503908 188 - chr14:60503704-60503858 NA NA NA NA NA chr14-47 60150266 60150667 153 - chr14:60150295-60150346 NA NA NA NA NA chr14-46 59898427 59898883 258 - chr14:59898693-59898753 NA NA NA NA NA chr14-45 59163227 59163923 409 - chr14:59163625-59163721 NA NA NA NA NA chr14-44 59035024 59035325 214 - chr14:59035128-59035289 NA NA NA NA NA chr14-43 58071254 58071678 231 - chr14:58071390-58071466 NA NA NA NA NA chr14-42 57939562 57939794 176 - chr14:57939575-57939695 NA NA NA NA NA chr14-41 57846973 57847464 211 - chr14:57847288-57847289 NA NA NA NA NA chr14-40 57545744 57546072 217 - chr14:57545769-57545875 NA NA NA NA NA chr14-39 57371473 57371838 225 - chr14:57371718-57371803 NA NA NA NA NA chr14-38 54163048 54163467 316 - chr14:54163289-54163410 NA NA NA NA NA chr14-37 52540062 52540501 264 - chr14:52540252-52540331 NA NA NA NA NA chr14-36 51785960 51786303 262 - chr14:51786035-51786216 NA NA NA NA NA chr14-35 51325165 51325708 246 - chr14:51325269-51325376 NA NA NA NA NA chr14-34 49384137 49384465 188 - chr14:49384223-49384271 NA NA NA NA NA chr14-33 49143581 49143764 170 - chr14:49143581-49143738 NA NA NA NA NA chr14-32 48763598 48763891 166 - chr14:48763708-48763713 NA NA NA NA NA chr14-31 48648603 48649098 275 - chr14:48648817-48648860 NA NA NA NA NA chr14-30 48272107 48272486 202 - chr14:48272357-48272382 NA NA NA NA NA chr14-29 48090420 48090908 209 - chr14:48090493-48090531 NA NA NA NA NA chr14-28 47251025 47251346 209 - chr14:47251227-47251324 NA NA NA NA NA chr14-27 47126826 47127367 318 - chr14:47127013-47127063 NA NA NA NA NA chr14-26 47111076 47111645 236 - chr14:47111493-47111564 NA NA NA NA NA chr14-25 46457977 46458273 257 - chr14:46457995-46458171 NA NA NA NA NA chr14-24 46277402 46277708 165 - chr14:46277523-46277547 NA NA NA NA NA chr14-23 46091000 46091457 245 - chr14:46091209-46091244 NA NA NA NA NA chr14-22 44243846 44244175 173 - chr14:44243988-44244005 NA NA NA NA NA chr14-21 43839418 43839995 290 - chr14:43839717-43839720 NA NA NA NA NA chr14-20 43692164 43692608 265 - chr14:43692401-43692487 NA NA NA NA NA chr14-19 43624799 43625144 189 - chr14:43625018-43625051 NA NA NA NA NA chr14-18 43011828 43012183 239 - chr14:43012035-43012158 NA NA NA NA NA chr14-17 42523166 42523546 171 - chr14:42523401-42523528 NA NA NA NA NA chr14-16 42509394 42509787 204 - chr14:42509459-42509474 NA NA NA NA NA chr14-15 42034716 42035011 155 - chr14:42034721-42034826 NA NA NA NA NA chr14-14 41834942 41835348 230 - chr14:41835107-41835161 NA NA NA NA NA chr14-13 38721566 38722025 236 - chr14:38721759-38721772 NA NA NA NA NA chr14-12 36060153 36060430 160 - chr14:36060222-36060297 NA NA NA NA NA chr14-11 33584423 33584719 185 - chr14:33584493-33584567 NA NA NA NA NA chr14-10 30561266 30561727 294 - chr14:30561310-30561437 NA NA NA NA NA chr14-9 30498129 30498566 283 - chr14:30498317-30498446 NA NA NA NA NA chr14-8 28371928 28372467 351 - chr14:28372107-28372270 NA NA NA NA NA chr14-7 27729509 27729764 155 - chr14:27729630-27729727 NA NA NA NA NA chr14-6 27573234 27573623 257 - chr14:27573275-27573400 NA NA NA NA NA chr14-5 27126207 27126384 156 - chr14:27126256-27126349 NA NA NA NA NA chr14-4 26582840 26583132 150 - chr14:26582990-26583036 NA NA NA NA NA chr14-3 24512744 24513059 189 - chr14:24512881-24513028 NA NA NA NA NA chr14-2 20682753 20683062 168 - chr14:20682767-20682888 NA NA NA NA NA chr14 20627499 20628117 425 - chr14:20627710-20627930 NA NA NA NA NA chr14-89 101880491 101880854 232 - chr14:101880517-101880688 NA NA NA NA NA chr13-31 99844230 99844565 279 - chr13:99844238-99844461 NA NA NA NA NA chr13-30 94095656 94096064 232 - chr13:94095784-94095840 NA NA NA NA NA chr13-29 93650166 93650548 217 - chr13:93650270-93650322 NA NA NA NA NA chr13-28 92311890 92312259 200 - chr13:92312153-92312184 NA NA NA NA NA chr13-27 87240444 87240996 195 - chr13:87240906-87240924 NA NA NA NA NA chr13-26 86979539 86980159 311 - chr13:86980004-86980023 NA NA NA NA NA chr13-25 86943796 86944226 190 - chr13:86943829-86943917 NA NA NA NA NA chr13-24 81442795 81443206 270 - chr13:81442803-81442932 NA NA NA NA NA chr13-23 79945950 79946254 194 - chr13:79946033-79946117 NA NA NA NA NA chr13-22 74591299 74591605 193 - chr13:74591328-74591408 NA NA NA NA NA chr13-21 72235100 72235379 153 - chr13:72235239-72235292 NA NA NA NA NA chr13-20 71332749 71332957 184 - chr13:71332782-71332942 NA NA NA NA NA chr13-19 70001658 70002154 232 - chr13:70001832-70001860 NA NA NA NA NA chr13-18 65876804 65877270 305 - chr13:65876896-65877040 NA NA NA NA NA chr13-17 65582812 65583051 234 - chr13:65582814-65583045 NA NA NA NA NA chr13-16 65267809 65268175 214 - chr13:65268043-65268105 NA NA NA NA NA chr13-15 62637285 62637746 325 - chr13:62637381-62637590 NA NA NA NA NA chr13-14 60368269 60368568 147 - chr13:60368427-60368434 NA NA NA NA NA chr13-13 55309169 55309440 192 - chr13:55309197-55309344 NA NA NA NA NA chr13-12 54688255 54689084 342 - chr13:54688844-54688850 NA NA NA NA NA chr13-11 53870973 53871488 290 - chr13:53871250-53871465 NA NA NA NA NA chr13-10 50363098 50363532 263 - chr13:50363353-50363445 NA NA NA NA NA chr13-9 50049001 50049580 302 - chr13:50049367-50049392 NA NA NA NA NA chr13-8 49137515 49137863 220 - chr13:49137745-49137837 NA NA NA NA NA chr13-7 48804150 48804488 175 - chr13:48804265-48804309 NA NA NA NA NA chr13-6 44117736 44118363 365 - chr13:44117949-44118052 NA NA NA NA NA chr13-5 39228434 39228636 158 - chr13:39228478-39228592 NA NA NA NA NA chr13-4 35629076 35629427 268 - chr13:35629205-35629390 NA NA NA NA NA chr13-3 26248083 26248421 215 - chr13:26248215-26248307 NA NA NA NA NA chr13-2 23460192 23460566 290 - chr13:23460239-23460501 NA NA NA NA NA chr13 19681890 19682236 253 - chr13:19681939-19682161 NA NA NA NA NA chr13-34 107781244 107781650 246 - chr13:107781347-107781433 NA NA NA NA NA chr13-33 104672337 104672788 288 - chr13:104672515-104672650 NA NA NA NA NA chr13-32 102142849 102143151 201 - chr13:102142970-102143070 NA NA NA NA NA chr12-69 96824832 96825205 237 - chr12:96824903-96824992 NA NA NA NA NA chr12-6 9248110 9248423 224 - chr12:9248175-9248262 NA NA NA NA NA chr12-68 91305349 91305725 235 - chr12:91305535-91305723 NA NA NA NA NA chr12-67 90397290 90397585 170 - chr12:90397328-90397373 NA NA NA NA NA chr12-66 90291412 90291919 316 - chr12:90291583-90291708 NA NA NA NA NA chr12-65 88957462 88957823 198 - chr12:88957492-88957527 NA NA NA NA NA chr12-64 88938246 88938453 172 - chr12:88938300-88938437 NA NA NA NA NA chr12-63 87940679 87940937 210 - chr12:87940711-87940905 NA NA NA NA NA chr12-62 85712584 85712813 197 - chr12:85712648-85712813 NA NA NA NA NA chr12-61 82531249 82531567 183 - chr12:82531361-82531425 NA NA NA NA NA chr12-60 79815485 79815804 170 - chr12:79815633-79815652 NA NA NA NA NA chr12-59 79484381 79484576 169 - chr12:79484422-79484565 NA NA NA NA NA chr12-58 76332134 76332606 280 - chr12:76332426-76332514 NA NA NA NA NA chr12-57 74961968 74962369 286 - chr12:74961986-74962157 NA NA NA NA NA chr12-56 73233070 73233403 211 - chr12:73233263-73233352 NA NA NA NA NA chr12-5 7289194 7289696 277 - chr12:7289315-7289517 NA NA NA NA NA chr12-55 71480668 71480977 212 - chr12:71480783-71480867 NA NA NA NA NA chr12-54 68931924 68932268 212 - chr12:68932017-68932097 NA NA NA NA NA chr12-53 67705515 67706155 409 - chr12:67705763-67705818 NA NA NA NA NA chr12-52 64479724 64480032 264 - chr12:64479736-64479868 NA NA NA NA NA chr12-51 62263449 62263705 230 - chr12:62263462-62263614 NA NA NA NA NA chr12-50 61403554 61403961 270 - chr12:61403711-61403844 NA NA NA NA NA chr12-4 6069946 6070450 210 - chr12:6069949-6070061 NA NA NA NA NA chr12-49 59564231 59564571 203 - chr12:59564388-59564454 NA NA NA NA NA chr12-48 58686071 58686400 264 - chr12:58686147-58686346 NA NA NA NA NA chr12-47 58413380 58413675 224 - chr12:58413445-58413602 NA NA NA NA NA chr12-46 58282908 58283118 165 - chr12:58282909-58283059 NA NA NA NA NA chr12-45 56770640 56770913 179 - chr12:56770693-56770778 NA NA NA NA NA chr12-44 55778991 55779206 170 - chr12:55779075-55779174 NA NA NA NA NA chr12-43 55351601 55351871 182 - chr12:55351662-55351756 NA NA NA NA NA chr12-42 54563280 54563510 187 - chr12:54563362-54563506 NA NA NA NA NA chr12-41 50693317 50693771 214 - chr12:50693347-50693461 NA NA NA NA NA chr12-40 47050546 47051196 353 - chr12:47050999-47051068 NA NA NA NA NA chr12-39 46334016 46334326 204 - chr12:46334098-46334148 NA NA NA NA NA chr12-38 45777123 45777348 150 - chr12:45777169-45777244 NA NA NA NA NA chr12-37 45668030 45668365 168 - chr12:45668240-45668241 NA NA NA NA NA chr12-36 45346142 45346452 243 - chr12:45346173-45346373 NA NA NA NA NA chr12-35 44727612 44727946 278 - chr12:44727724-44727946 NA NA NA NA NA chr12-34 41320949 41321499 304 - chr12:41321329-41321387 NA NA NA NA NA chr12-33 41186027 41186447 224 - chr12:41186192-41186220 NA NA NA NA NA chr12-32 40963560 40963888 285 - chr12:40963729-40963887 NA NA NA NA NA chr12-31 39453876 39454212 234 - chr12:39454079-39454211 NA NA NA NA NA chr12-30 38400075 38400655 387 - chr12:38400124-38400419 NA NA NA NA NA chr12-3 3543349 3543556 178 - chr12:3543393-3543542 NA NA NA NA NA chr12-2 3384163 3384521 337 - chr12:3384171-3384500 NA NA NA NA NA chr12-29 33833377 33833604 157 - chr12:33833451-33833538 NA NA NA NA NA chr12-28 32656860 32657183 167 - chr12:32656895-32657010 NA NA NA NA NA chr12-27 29025625 29026010 280 - chr12:29025976-29025987 NA NA NA NA NA chr12-26 28650272 28650722 215 - chr12:28650359-28650443 NA NA NA NA NA chr12-25 27919564 27919845 177 - chr12:27919662-27919723 NA NA NA NA NA chr12-24 26317512 26317896 244 - chr12:26317691-26317795 NA NA NA NA NA chr12-23 24202512 24203013 238 - chr12:24202797-24202816 NA NA NA NA NA chr12-22 23990613 23991228 398 - chr12:23990792-23990977 NA NA NA NA NA chr12-21 23407147 23407629 252 - chr12:23407298-23407320 NA NA NA NA NA chr12-20 23387249 23387647 248 - chr12:23387384-23387482 NA NA NA NA NA chr12-19 22956757 22957032 148 - chr12:22956854-22956895 NA NA NA NA NA chr12-18 21220185 21220529 263 - chr12:21220210-21220446 NA NA NA NA NA chr12-17 20878166 20878768 379 - chr12:20878480-20878584 NA NA NA NA NA chr12-16 17750508 17750868 190 - chr12:17750588-17750668 NA NA NA NA NA chr12-15 17340313 17340752 196 - chr12:17340374-17340489 NA NA NA NA NA chr12-14 15704232 15704548 176 - chr12:15704267-15704373 NA NA NA NA NA chr12-13 14761754 14762035 206 - chr12:14761967-14762006 NA NA NA NA NA chr12-12 14472921 14473103 173 - chr12:14472941-14473087 NA NA NA NA NA chr12-11 14456690 14456989 156 - chr12:14456857-14456870 NA NA NA NA NA chr12-10 14065649 14066146 311 - chr12:14065786-14066143 NA NA NA NA NA chr12-82 131613579 131614045 234 - chr12:131613922-131613924 NA NA NA NA NA chr12-81 126467416 126467735 162 - chr12:126467480-126467547 NA NA NA NA NA chr12-80 126020773 126021180 239 - chr12:126020831-126021014 NA NA NA NA NA chr12-79 124908686 124908929 165 - chr12:124908748-124908803 NA NA NA NA NA chr12-78 122358993 122359183 169 - chr12:122359035-122359183 NA NA NA NA NA chr12-77 120831902 120832340 160 - chr12:120832268-120832326 NA NA NA NA NA chr12-9 11908245 11908549 273 - chr12:11908280-11908460 NA NA NA NA NA chr12-76 118008431 118008739 184 - chr12:118008679-118008739 NA NA NA NA NA chr12-75 116645272 116645820 282 - chr12:116645381-116645397 NA NA NA NA NA chr12-74 116229478 116229777 188 - chr12:116229504-116229655 NA NA NA NA NA chr12-73 114912430 114912594 147 - chr12:114912456-114912552 NA NA NA NA NA chr12-72 112323384 112323810 248 - chr12:112323480-112323550 NA NA NA NA NA chr12-8 10510795 10511101 157 - chr12:10510948-10510964 NA NA NA NA NA chr12-71 104819070 104819338 193 - chr12:104819095-104819213 NA NA NA NA NA chr12 1027831 1028260 258 - chr12:1028116-1028203 NA NA NA NA NA chr12-7 10246148 10246780 297 - chr12:10246413-10246446 NA NA NA NA NA chr12-70 100419776 100420321 235 - chr12:100419825-100419845 NA NA NA NA NA chr11-61 98873535 98874044 317 - chr11:98873622-98873747 NA NA NA NA NA chr11-60 97421250 97421632 254 - chr11:97421470-97421596 NA NA NA NA NA chr11-59 97074782 97075154 181 - chr11:97075011-97075077 NA NA NA NA NA chr11-58 95868751 95869023 173 - chr11:95868806-95868880 NA NA NA NA NA chr11-6 9538573 9538883 250 - chr11:9538603-9538733 NA NA NA NA NA chr11-57 95056896 95057228 215 - chr11:95056969-95057145 NA NA NA NA NA chr11-56 93086656 93087084 276 - chr11:93086796-93086920 NA NA NA NA NA chr11-55 92610561 92610898 265 - chr11:92610568-92610761 NA NA NA NA NA chr11-5 9175581 9175981 201 - chr11:9175769-9175771 NA NA NA NA NA chr11-4 8442193 8442443 193 - chr11:8442313-8442407 NA NA NA NA NA chr11-54 83963686 83964104 218 - chr11:83963691-83963839 NA NA NA NA NA chr11-53 82708001 82708301 224 - chr11:82708126-82708274 NA NA NA NA NA chr11-52 82573372 82573751 244 - chr11:82573436-82573635 NA NA NA NA NA chr11-51 81695903 81696158 182 - chr11:81696043-81696152 NA NA NA NA NA chr11-50 81557283 81558177 265 - chr11:81557891-81557911 NA NA NA NA NA chr11-49 81356225 81356581 313 - chr11:81356258-81356528 NA NA NA NA NA chr11-48 81012308 81012795 290 - chr11:81012509-81012602 NA NA NA NA NA chr11-47 79374634 79375011 270 - chr11:79374639-79374802 NA NA NA NA NA chr11-46 79326606 79327001 326 - chr11:79326637-79326962 NA NA NA NA NA chr11-45 78641118 78641418 195 - chr11:78641181-78641187 NA NA NA NA NA chr11-44 78527213 78527604 214 - chr11:78527363-78527400 NA NA NA NA NA chr11-43 78437102 78437424 164 - chr11:78437185-78437191 NA NA NA NA NA chr11-42 77778528 77778832 198 - chr11:77778528-77778620 NA NA NA NA NA chr11-3 7701096 7701425 239 - chr11:7701177-7701332 NA NA NA NA NA chr11-41 76709999 76710443 256 - chr11:76710190-76710258 NA NA NA NA NA chr11-40 76634552 76635072 301 - chr11:76634728-76634915 NA NA NA NA NA chr11-39 76554483 76554771 189 - chr11:76554564-76554664 NA NA NA NA NA chr11-38 74857657 74857949 188 - chr11:74857757-74857841 NA NA NA NA NA chr11-37 74373378 74373598 157 - chr11:74373410-74373442 NA NA NA NA NA chr11-36 73579873 73580340 213 - chr11:73579933-73580002 NA NA NA NA NA chr11-35 68205149 68205483 173 - chr11:68205321-68205355 NA NA NA NA NA chr11-34 66855413 66855792 207 - chr11:66855630-66855665 NA NA NA NA NA chr11-33 62299682 62300101 255 - chr11:62299886-62299977 NA NA NA NA NA chr11-2 6094269 6094480 165 - chr11:6094329-6094422 NA NA NA NA NA chr11-32 59566987 59567296 229 - chr11:59567147-59567296 NA NA NA NA NA chr11-31 59423456 59423830 189 - chr11:59423652-59423678 NA NA NA NA NA chr11-30 59128151 59128426 155 - chr11:59128287-59128322 NA NA NA NA NA chr11-29 56678679 56678916 180 - chr11:56678684-56678845 NA NA NA NA NA chr11 4985134 4985548 217 - chr11:4985277-4985333 NA NA NA NA NA chr11-28 44019215 44019465 186 - chr11:44019316-44019380 NA NA NA NA NA chr11-27 43154250 43154513 245 - chr11:43154279-43154506 NA NA NA NA NA chr11-26 40521207 40521426 194 - chr11:40521233-40521402 NA NA NA NA NA chr11-25 39341615 39342096 259 - chr11:39341781-39341818 NA NA NA NA NA chr11-24 35843029 35843230 148 - chr11:35843036-35843131 NA NA NA NA NA chr11-23 35323432 35323718 180 - chr11:35323500-35323574 NA NA NA NA NA chr11-22 34777618 34777945 194 - chr11:34777670-34777731 NA NA NA NA NA chr11-21 33863575 33863863 196 - chr11:33863625-33863757 NA NA NA NA NA chr11-20 31313216 31313533 192 - chr11:31313314-31313399 NA NA NA NA NA chr11-19 30818756 30819370 200 - chr11:30819329-30819370 NA NA NA NA NA chr11-18 30650417 30650628 151 - chr11:30650459-30650550 NA NA NA NA NA chr11-17 29302886 29303515 332 - chr11:29302998-29302999 NA NA NA NA NA chr11-16 26040683 26041098 156 - chr11:26040771-26040782 NA NA NA NA NA chr11-15 24804398 24804679 200 - chr11:24804476-24804595 NA NA NA NA NA chr11-14 24182419 24182765 169 - chr11:24182579-24182689 NA NA NA NA NA chr11-13 22334491 22335165 355 - chr11:22334828-22334852 NA NA NA NA NA chr11-12 21036012 21036195 158 - chr11:21036044-21036177 NA NA NA NA NA chr11-11 20487940 20488274 200 - chr11:20488137-20488203 NA NA NA NA NA chr11-10 14855103 14855382 163 - chr11:14855259-14855306 NA NA NA NA NA chr11-9 13779049 13779461 291 - chr11:13779101-13779133 NA NA NA NA NA chr11-8 13679670 13680019 315 - chr11:13679670-13679951 NA NA NA NA NA chr11-82 135036345 135036697 284 - chr11:135036419-135036635 NA NA NA NA NA chr11-81 130174572 130174882 181 - chr11:130174687-130174825 NA NA NA NA NA chr11-80 127168831 127169081 150 - chr11:127168895-127168945 NA NA NA NA NA chr11-79 117785916 117786111 182 - chr11:117785926-117786095 NA NA NA NA NA chr11-78 115393268 115393705 192 - chr11:115393576-115393649 NA NA NA NA NA chr11-77 114796161 114796562 287 - chr11:114796241-114796414 NA NA NA NA NA chr11-76 113580111 113580588 241 - chr11:113580282-113580287 NA NA NA NA NA chr11-75 113564688 113565032 212 - chr11:113564807-113564887 NA NA NA NA NA chr11-74 113099073 113099287 160 - chr11:113099133-113099239 NA NA NA NA NA chr11-73 112506485 112506824 261 - chr11:112506565-112506748 NA NA NA NA NA chr11-72 111352097 111352383 223 - chr11:111352194-111352354 NA NA NA NA NA chr11-71 111044410 111044591 155 - chr11:111044412-111044489 NA NA NA NA NA chr11-70 109672572 109672816 185 - chr11:109672574-109672738 NA NA NA NA NA chr11-69 108723946 108724441 229 - chr11:108724264-108724331 NA NA NA NA NA chr11-68 108625308 108625616 209 - chr11:108625330-108625440 NA NA NA NA NA chr11-67 108186922 108187446 224 - chr11:108187038-108187067 NA NA NA NA NA chr11-66 107044625 107044922 157 - chr11:107044648-107044743 NA NA NA NA NA chr11-65 104655176 104655393 173 - chr11:104655203-104655298 NA NA NA NA NA chr11-64 103401485 103402155 321 - chr11:103401985-103402069 NA NA NA NA NA chr11-63 103342927 103343161 164 - chr11:103342995-103343089 NA NA NA NA NA chr11-62 100325891 100326190 159 - chr11:100326102-100326121 NA NA NA NA NA chr11-7 10030379 10030930 353 - chr11:10030502-10030636 NA NA NA NA NA chr10-87 96382797 96382975 146 - chr10:96382805-96382935 NA NA NA NA NA chr10-86 94204993 94205439 233 - chr10:94205093-94205228 NA NA NA NA NA chr10-85 93240828 93241047 163 - chr10:93240839-93240946 NA NA NA NA NA chr10-84 91512435 91512826 318 - chr10:91512525-91512770 NA NA NA NA NA chr10-83 90701364 90701830 217 - chr10:90701656-90701710 NA NA NA NA NA chr10-82 89629343 89629746 327 - chr10:89629421-89629520 NA NA NA NA NA chr10-81 87513730 87514341 325 - chr10:87513880-87513919 NA NA NA NA NA chr10-80 86499925 86500351 285 - chr10:86500012-86500156 NA NA NA NA NA chr10-79 84905290 84905561 195 - chr10:84905333-84905386 NA NA NA NA NA chr10-78 83730474 83730942 315 - chr10:83730623-83730767 NA NA NA NA NA chr10-77 83395070 83395643 330 - chr10:83395463-83395493 NA NA NA NA NA chr10-76 82808597 82809006 313 - chr10:82808712-82808933 NA NA NA NA NA chr10-75 81752431 81752760 187 - chr10:81752588-81752623 NA NA NA NA NA chr10-74 81630724 81631228 381 - chr10:81630939-81631078 NA NA NA NA NA chr10-73 80614555 80614816 181 - chr10:80614625-80614706 NA NA NA NA NA chr10-72 78159828 78160348 256 - chr10:78159980-78160148 NA NA NA NA NA chr10-71 77143152 77143688 205 - chr10:77143552-77143564 NA NA NA NA NA chr10-70 74583747 74584071 195 - chr10:74583918-74583984 NA NA NA NA NA chr10-69 72910082 72910488 229 - chr10:72910218-72910270 NA NA NA NA NA chr10-68 71734596 71734907 261 - chr10:71734793-71734904 NA NA NA NA NA chr10-67 70126988 70127188 175 - chr10:70127022-70127166 NA NA NA NA NA chr10-2 6969506 6969773 189 - chr10:6969609-6969772 NA NA NA NA NA chr10-66 69267716 69268062 209 - chr10:69267724-69267882 NA NA NA NA NA chr10-65 67368774 67369174 176 - chr10:67368818-67368902 NA NA NA NA NA chr10-64 67095749 67095970 151 - chr10:67095815-67095896 NA NA NA NA NA chr10-63 66918592 66919091 256 - chr10:66918848-66918861 NA NA NA NA NA chr10-62 66626659 66627116 227 - chr10:66626847-66626855 NA NA NA NA NA chr10-61 65575565 65575747 158 - chr10:65575595-65575741 NA NA NA NA NA chr10-60 64302931 64303251 225 - chr10:64303082-64303212 NA NA NA NA NA chr10-59 63170004 63170317 174 - chr10:63170087-63170122 NA NA NA NA NA chr10-58 62040505 62040764 203 - chr10:62040538-62040685 NA NA NA NA NA chr10-57 61784774 61784990 186 - chr10:61784805-61784961 NA NA NA NA NA chr10-56 60984786 60985023 151 - chr10:60984829-60984937 NA NA NA NA NA chr10-55 60980631 60981061 277 - chr10:60980636-60980760 NA NA NA NA NA chr10-54 60486907 60487202 148 - chr10:60487032-60487131 NA NA NA NA NA chr10-53 60317874 60318152 173 - chr10:60317952-60318020 NA NA NA NA NA chr10-52 60204791 60205357 213 - chr10:60204992-60205087 NA NA NA NA NA chr10-51 58950500 58950888 311 - chr10:58950562-58950796 NA NA NA NA NA chr10-50 58710446 58710917 291 - chr10:58710466-58710577 NA NA NA NA NA chr10-49 58201623 58201866 163 - chr10:58201630-58201713 NA NA NA NA NA chr10-48 58112497 58112800 158 - chr10:58112651-58112726 NA NA NA NA NA chr10-47 57567346 57567617 221 - chr10:57567346-57567417 NA NA NA NA NA chr10-46 57171884 57172232 171 - chr10:57172086-57172130 NA NA NA NA NA chr10-45 55298784 55299508 363 - chr10:55299171-55299173 NA NA NA NA NA chr10-44 55114636 55115004 223 - chr10:55114698-55114776 NA NA NA NA NA chr10-43 52808581 52808857 156 - chr10:52808632-52808714 NA NA NA NA NA chr10-42 52607261 52607575 191 - chr10:52607426-52607466 NA NA NA NA NA chr10-41 52259954 52260363 296 - chr10:52260211-52260298 NA NA NA NA NA chr10-40 51642338 51642650 199 - chr10:51642414-51642426 NA NA NA NA NA chr10-39 50970590 50970872 161 - chr10:50970800-50970840 NA NA NA NA NA chr10-38 50368629 50368964 190 - chr10:50368755-50368762 NA NA NA NA NA chr10-37 49086823 49087313 248 - chr10:49087058-49087157 NA NA NA NA NA chr10-36 48284112 48284379 168 - chr10:48284112-48284181 NA NA NA NA NA chr10 4716100 4716609 259 - chr10:4716377-4716440 NA NA NA NA NA chr10-35 44964616 44964908 228 - chr10:44964641-44964805 NA NA NA NA NA chr10-34 44837010 44837327 257 - chr10:44837017-44837254 NA NA NA NA NA chr10-33 35677515 35677905 204 - chr10:35677716-35677734 NA NA NA NA NA chr10-32 34504780 34505338 384 - chr10:34505173-34505237 NA NA NA NA NA chr10-31 34452044 34452450 286 - chr10:34452150-34452396 NA NA NA NA NA chr10-30 34268795 34269240 304 - chr10:34268848-34269059 NA NA NA NA NA chr10-29 33487323 33487785 225 - chr10:33487376-33487522 NA NA NA NA NA chr10-28 32464050 32464405 234 - chr10:32464169-32464282 NA NA NA NA NA chr10-27 32146844 32147326 217 - chr10:32146983-32147019 NA NA NA NA NA chr10-26 28881602 28882189 303 - chr10:28881829-28881848 NA NA NA NA NA chr10-25 28791454 28791982 288 - chr10:28791479-28791687 NA NA NA NA NA chr10-24 28361178 28361483 169 - chr10:28361243-28361276 NA NA NA NA NA chr10-23 27496414 27496843 326 - chr10:27496514-27496737 NA NA NA NA NA chr10-22 27141949 27142336 291 - chr10:27141972-27142167 NA NA NA NA NA chr10-21 26061348 26061727 190 - chr10:26061542-26061543 NA NA NA NA NA chr10-20 25829277 25829823 332 - chr10:25829585-25829703 NA NA NA NA NA chr10-19 25285768 25286085 200 - chr10:25285864-25285961 NA NA NA NA NA chr10-18 25131440 25131742 154 - chr10:25131592-25131598 NA NA NA NA NA chr10-17 23525045 23525349 153 - chr10:23525237-23525321 NA NA NA NA NA chr10-16 23498415 23498630 160 - chr10:23498467-23498566 NA NA NA NA NA chr10-15 23384264 23384480 167 - chr10:23384338-23384456 NA NA NA NA NA chr10-14 22804472 22804808 270 - chr10:22804529-22804733 NA NA NA NA NA chr10-13 22098400 22098870 269 - chr10:22098689-22098757 NA NA NA NA NA chr10-12 20280791 20281075 160 - chr10:20280917-20280957 NA NA NA NA NA chr10-11 20240211 20241056 493 - chr10:20240251-20240662 NA NA NA NA NA chr10-10 19027492 19027876 213 - chr10:19027708-19027755 NA NA NA NA NA chr10-9 19024367 19024746 227 - chr10:19024420-19024495 NA NA NA NA NA chr10-8 18790860 18791111 164 - chr10:18790890-18791005 NA NA NA NA NA chr10-7 16581265 16581626 182 - chr10:16581494-16581597 NA NA NA NA NA chr10-6 13613927 13614178 171 - chr10:13614034-13614125 NA NA NA NA NA chr10-5 13568667 13569217 315 - chr10:13568952-13569032 NA NA NA NA NA chr10-4 13550895 13551389 376 - chr10:13550907-13551105 NA NA NA NA NA chr10-112 132969357 132969528 147 - chr10:132969388-132969511 NA NA NA NA NA chr10-111 132853256 132853530 169 - chr10:132853406-132853470 NA NA NA NA NA chr10-110 125101533 125101860 193 - chr10:125101644-125101703 NA NA NA NA NA chr10-109 124784269 124784616 312 - chr10:124784294-124784501 NA NA NA NA NA chr10-108 123910417 123910681 211 - chr10:123910479-123910631 NA NA NA NA NA chr10-107 123900963 123901292 222 - chr10:123901078-123901193 NA NA NA NA NA chr10-106 123616149 123616310 153 - chr10:123616150-123616295 NA NA NA NA NA chr10-105 120552429 120553158 376 - chr10:120552834-120553001 NA NA NA NA NA chr10-104 118368343 118368672 225 - chr10:118368349-118368470 NA NA NA NA NA chr10-103 117095344 117095743 208 - chr10:117095505-117095542 NA NA NA NA NA chr10-102 116617483 116617963 249 - chr10:116617678-116617720 NA NA NA NA NA chr10-101 116515801 116516377 249 - chr10:116515965-116515985 NA NA NA NA NA chr10-100 115952373 115952660 152 - chr10:115952488-115952505 NA NA NA NA NA chr10-99 115732535 115733058 311 - chr10:115732798-115732897 NA NA NA NA NA chr10-98 113316398 113316755 193 - chr10:113316529-113316558 NA NA NA NA NA chr10-97 110862310 110862620 214 - chr10:110862451-110862539 NA NA NA NA NA chr10-96 110432872 110433221 187 - chr10:110433073-110433176 NA NA NA NA NA chr10-95 107146198 107146590 206 - chr10:107146251-107146395 NA NA NA NA NA chr10-94 107000676 107001129 237 - chr10:107000964-107001129 NA NA NA NA NA chr10-93 106720547 106720936 191 - chr10:106720797-106720894 NA NA NA NA NA chr10-92 106593659 106593937 209 - chr10:106593771-106593911 NA NA NA NA NA chr10-91 105706104 105706511 320 - chr10:105706439-105706498 NA NA NA NA NA chr10-90 104819778 104820037 152 - chr10:104819863-104819908 NA NA NA NA NA chr10-89 104409040 104409356 285 - chr10:104409074-104409328 NA NA NA NA NA chr10-88 101161181 101161423 146 - chr10:101161296-101161410 NA NA NA NA NA chr10-3 10005726 10006063 203 - chr10:10005848-10005893 NA NA NA NA NA 1010.5 chr4 61456361 61456527 + 6.75 NA intron (NM_001371343, intron 2 of 23) (AT)n|Simple_repeat|Simple_repeat 254272 NM_001371342 2450.75 chrUn_KI270467v1 695 1658 + 6.75 NA NA SAR|Satellite|Satellite NA NA 862 chr2 169753067 169753224 + 5.75 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat 19313 NM_144711 151230 Hs.655150 NM_144711 ENSG00000213160 KLHL23 DITHP kelch like family member 23 protein-coding 921.25 chr22 29410203 29410485 + 5.25 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -21761 NM_001127 162 Hs.368794 NM_001127 ENSG00000100280 AP1B1 ADTB1|AP105A|BAM22|CLAPB2 adaptor related protein complex 1 subunit beta 1 protein-coding 1209.75 chr16 34587962 34588420 + 4.5 NA Intergenic Intergenic -206711 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 603 chrX 98023598 98023801 + 3.75 NA Intergenic Intergenic -459164 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 494.25 chr3 8773107 8773271 + 3.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -3575 NM_001354654 5021 Hs.2820 NM_000916 ENSG00000180914 OXTR OT-R oxytocin receptor protein-coding 1384.5 chrUn_KI270438v1 109012 109943 + 3.5 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 1037 chr5 49599457 49600074 + 3.25 NA Intergenic BSR/Beta|Satellite|Satellite 841523 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 1573.75 chrUn_KI270466v1 181 1218 + 3.25 NA NA SAR|Satellite|Satellite NA NA 1010 chr17_KI270729v1_random 2866 3646 + 3 NA NA (TTCCA)n|Simple_repeat|Simple_repeat NA NA 318.75-2 chr17_KI270729v1_random 27701 27872 + 2.75 NA NA (GAATG)n|Satellite|Satellite NA NA 410.5 chr17 62318335 62318571 + 2.75 NA Intergenic Intergenic -42798 NR_027486 440452 Hs.448884 NR_027486 ENSG00000188755 TBC1D3P2 - TBC1 domain family member 3 pseudogene 2 pseudo 390-3 chr7 153329325 153329524 + 2.5 NA Intergenic (ATATAT)n|Simple_repeat|Simple_repeat 82810 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 1010-2 chr2 66882773 66883562 + 2.5 NA Intergenic L1MA7|LINE|L1 -21269 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 355.75-7 chr5 146174448 146174693 + 2.5 NA intron (NM_001317965, intron 1 of 30) (AT)n|Simple_repeat|Simple_repeat 8080 NM_020117 51520 Hs.432674 NM_016460 ENSG00000133706 LARS HSPC192|ILFS1|LARS1|LEURS|LEUS|LFIS|LRS|PIG44|RNTLS|hr025Cl leucyl-tRNA synthetase protein-coding 279.25-2 chr11 37846945 37847056 + 2.5 NA Intergenic Intergenic -91601 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 354.75-5 chr2 221181569 221181743 + 2.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 390648 NM_004438 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 481 chr4 111857231 111857508 + 2.5 NA Intergenic Intergenic -288085 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 385.5 chr4 130340332 130340625 + 2.5 NA Intergenic MLT1E3|LTR|ERVL-MaLR -35883 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 1031.5 chr4 49709278 49710976 + 2.25 NA Intergenic SAR|Satellite|Satellite 723485 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 315-2 chr3 30915188 30915401 + 2.25 NA Intergenic L1MA3|LINE|L1 -20633 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 562.75 chr12 18629359 18629918 + 2.25 NA intron (NM_001288774, intron 31 of 32) intron (NM_001288774, intron 31 of 32) 107871 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 448.25 chr6 124717526 124717821 + 2.25 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -244872 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 518 chr14 61883953 61884445 + 2.25 NA intron (NM_001367656, intron 1 of 7) intron (NM_001367656, intron 1 of 7) -43496 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 379.5-4 chr8 107253391 107253788 + 2.25 NA intron (NM_001199859, intron 8 of 8) intron (NM_001199859, intron 8 of 8) 82926 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 535.75 chr6 162653565 162654076 + 2.25 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -73312 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 551-2 chr8 127408000 127408607 + 2.25 NA intron (NR_117100, intron 5 of 5) intron (NR_117100, intron 5 of 5) -7522 NM_001159542 5462 Hs.450254 NM_001159542 ENSG00000212993 POU5F1B OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8 POU class 5 homeobox 1B protein-coding 532 chr2 32992181 32992613 + 2 NA intron (NM_206943, intron 2 of 33) L2c|LINE|L2 45444 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 483 chr3 4206840 4207239 + 2 NA Intergenic L1ME1|LINE|L1 -96265 NM_001320677 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 305.25-6 chr4 32662886 32663138 + 2 NA Intergenic Intergenic 311974 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 612 chr20 58571422 58571977 + 2 NA intron (NR_034147, intron 6 of 6) intron (NR_034147, intron 6 of 6) -56300 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 564.75 chr20 24027174 24027634 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -38625 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 466.75 chr17 25920096 25920457 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1168965 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 327.75 chr1 101945566 101945890 + 2 NA intron (NM_058170, intron 1 of 5) FLAM_C|SINE|Alu 51506 NR_110211 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 330-4 chr22 45680236 45680513 + 2 NA intron (NM_001167621, intron 1 of 10) L1M5|LINE|L1 8540 NM_013236 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 378.5-5 chr4 102412577 102413163 + 2 NA Intergenic L1ME1|LINE|L1 -67388 NM_001135146 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 361 chr7 55931966 55932190 + 2 NA intron (NM_182633, intron 6 of 6) intron (NM_182633, intron 6 of 6) -19799 NM_015969 51373 Hs.44298 NM_015969 ENSG00000239789 MRPS17 HSPC011|MRP-S17|RPMS17|S17mt mitochondrial ribosomal protein S17 protein-coding 329.75-7 chr8 103816626 103816927 + 2 NA intron (NM_001348495, intron 4 of 24) intron (NM_001348495, intron 4 of 24) -2444 NM_001348503 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 520 chr10 85395371 85395915 + 2 NA Intergenic L1M5|LINE|L1 37129 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 472 chr13 61346163 61346551 + 2 NA Intergenic Intergenic 69165 NM_022843 64881 Hs.391781 NM_022843 ENSG00000280165 PCDH20 PCDH13 protocadherin 20 protein-coding 393.5 chr1 115516069 115516326 + 2 NA Intergenic Charlie6|DNA|hAT-Charlie -125773 NM_138959 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 393.25-2 chr16 76278432 76278792 + 2 NA intron (NR_136213, intron 1 of 23) intron (NR_136213, intron 1 of 23) 1211 NM_001322180 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 485 chr12 119355120 119355522 + 2 NA intron (NM_178499, intron 1 of 13) intron (NM_178499, intron 1 of 13) 20592 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 367.25 chr1 42069458 42069760 + 2 NA Intergenic Intergenic -33675 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 477.5 chr1 56760447 56760880 + 2 NA intron (NM_001004303, intron 5 of 19) MIR|SINE|MIR 58741 NM_001004303 199920 Hs.437655 NM_001004303 ENSG00000187889 FYB2 ARAP|C1orf168 FYN binding protein 2 protein-coding 294.25-5 chr17 70965008 70965208 + 2 NA Intergenic L1ME1|LINE|L1 237071 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 401 chr14 85060781 85061018 + 2 NA Intergenic Charlie18a|DNA|hAT-Charlie -211033 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 259-9 chr4 37270420 37270618 + 2 NA intron (NM_001144990, intron 1 of 6) L1PA12|LINE|L1 25776 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 613.25 chr18 70582619 70583120 + 2 NA Intergenic Intergenic 68085 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 433.5 chr16 53229219 53229709 + 2 NA intron (NM_001352157, intron 7 of 37) intron (NM_001352157, intron 7 of 37) 21013 NM_001352158 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 270.75 chr1 48038625 48038773 + 2 NA Intergenic Intergenic -41314 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 395-2 chr12 60814237 60814711 + 2 NA Intergenic L1MEd|LINE|L1 1125104 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 697.5 chr3 67886472 67887077 + 2 NA intron (NR_109992, intron 5 of 6) intron (NR_109992, intron 5 of 6) -104818 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 400.75 chr12 17952685 17953107 + 2 NA Intergenic (ATTAT)n|Simple_repeat|Simple_repeat 137297 NM_001286201 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 300-2 chr1 169572445 169572669 + 2 NA intron (NM_000130, intron 2 of 24) intron (NM_000130, intron 2 of 24) 13974 NM_000130 2153 Hs.30054 NM_000130 ENSG00000198734 F5 FVL|PCCF|RPRGL1|THPH2 coagulation factor V protein-coding 385.75 chr1 190275621 190276177 + 2 NA intron (NM_001317188, intron 2 of 6) intron (NM_001317188, intron 2 of 6) 200111 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 312 chr18 1502663 1502916 + 2 NA Intergenic Intergenic -143160 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 399.75-2 chrUn_KI270438v1 104521 104987 + 2 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 323-7 chr4 130674224 130674440 + 2 NA Intergenic Intergenic 297971 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 357-2 chr9 80751007 80751263 + 2 NA Intergenic Intergenic 776112 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 366-3 chr5 122131229 122131712 + 2 NA intron (NM_207317, intron 1 of 1) L1MA9|LINE|L1 1924 NM_207317 133923 Hs.729673 NM_207317 ENSG00000164185 ZNF474 - zinc finger protein 474 protein-coding 253.25-12 chr2 214265544 214265748 + 2 NA intron (NR_047660, intron 14 of 14) L1MC2|LINE|L1 -145408 NR_159945 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 218-31 chr9 30407914 30408042 + 2 NA intron (NR_046204, intron 1 of 2) L1M5|LINE|L1 476 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 225.25-9 chr11 83503339 83503589 + 2 NA intron (NM_001142699, intron 21 of 27) MLT2A1|LTR|ERVL 178961 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 352-4 chr5 29778904 29779115 + 2 NA Intergenic Intergenic -101551 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 357.25 chr1 242446915 242447200 + 2 NA intron (NM_001320272, intron 2 of 10) MIRb|SINE|MIR 2411 NM_001195812 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 585.75 chrUn_GL000216v2 231 861 + 2 NA NA (ATTCC)n|Simple_repeat|Simple_repeat NA NA 533.5 chr1 233593877 233594286 + 2 NA Intergenic L1ME2z|LINE|L1 -20025 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 214.75-23 chr2 76165774 76165992 + 2 NA Intergenic L1ME3A|LINE|L1 -454968 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 538.75 chr4 44135969 44136635 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 119240 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 214-29 chr5 102826147 102826309 + 2 NA intron (NM_001364582, intron 1 of 24) intron (NM_001364582, intron 1 of 24) 18030 NM_001364582 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 449-2 chr5 170691072 170691637 + 2 NA intron (NM_001278340, intron 2 of 8) intron (NM_001278340, intron 2 of 8) -9884 NR_136214 105377716 Hs.570880 NR_136214 ENSG00000253591 LOC105377716 - uncharacterized LOC105377716 ncRNA 752.5 chr17 26883993 26885218 + 2 NA Intergenic ALR/Alpha|Satellite|centr 204636 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 345.5-6 chr5 34060078 34060326 + 1.75 NA intron (NR_146599, intron 7 of 11) Tigger3c|DNA|TcMar-Tigger -16989 NM_181435 114899 Hs.171929 NM_030945 ENSG00000082196 C1QTNF3 C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3 C1q and TNF related 3 protein-coding 279.75-17 chr8 63532409 63532715 + 1.75 NA Intergenic Intergenic 66713 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 289 chr1 237992815 237993180 + 1.75 NA Intergenic Intergenic -102075 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 330.5 chr1 105604356 105604603 + 1.75 NA intron (NR_125954, intron 2 of 3) intron (NR_125954, intron 2 of 3) 14456 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 485-3 chr8 83406730 83407039 + 1.75 NA intron (NR_122034, intron 1 of 1) LTR37-int|LTR|ERV1 3126 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 422.5 chr4 22026398 22026738 + 1.75 NA Intergenic L1MEg|LINE|L1 -77817 NM_147182 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 282-7 chr19 43899831 43900034 + 1.75 NA intron (NR_038334, intron 2 of 2) MER5A|DNA|hAT-Charlie 1871 NR_038334 100505715 Hs.76561 NR_038334 ENSG00000267058 LOC100505715 - uncharacterized LOC100505715 ncRNA 342.5-6 chr7 28052755 28053030 + 1.75 NA intron (NM_175061, intron 1 of 4) L1MB2|LINE|L1 -127565 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 298.25-3 chr12 16440635 16440823 + 1.75 NA Intergenic L1ME3|LINE|L1 87312 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 390.25 chr16 34593237 34593659 + 1.75 NA Intergenic (GATTCCATTC)n|Simple_repeat|Simple_repeat -211968 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 242.5-7 chr11 110306065 110306250 + 1.75 NA Intergenic Intergenic -9445 NM_001260495 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 269.75-4 chr15 32963547 32963749 + 1.75 NA intron (NM_001277313, intron 9 of 20) L2a|LINE|L2 104526 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 466-2 chr2 169461223 169461731 + 1.75 NA Intergenic Intergenic -18017 NM_152384 129880 Hs.233398 NM_152384 ENSG00000163093 BBS5 - Bardet-Biedl syndrome 5 protein-coding 191-27 chr19 46661447 46661710 + 1.75 NA promoter-TSS (NR_040041) promoter-TSS (NR_040041) 100 NR_040041 100506068 Hs.434327 NR_040041 ENSG00000245598 DACT3-AS1 - DACT3 antisense RNA 1 ncRNA 364.75-4 chr14 87179256 87179618 + 1.75 NA Intergenic L2a|LINE|L2 273659 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 395.5-2 chr7 53850276 53851050 + 1.75 NA Intergenic Intergenic -38732 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 238.25 chr1 218421329 218421618 + 1.75 NA intron (NR_138148, intron 2 of 6) intron (NR_138148, intron 2 of 6) -16160 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 567.25-2 chr7 54264618 54265354 + 1.75 NA Intergenic Intergenic -65711 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 392.25-2 chr3 917095 917662 + 1.75 NA Intergenic Intergenic -175646 NM_001349359 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 555-2 chr5 125530312 125531451 + 1.75 NA intron (NR_109887, intron 3 of 3) L1ME2z|LINE|L1 37620 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 270-6 chr18 73745292 73745551 + 1.75 NA Intergenic Intergenic 402413 NM_152676 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 235.5-36 chr7 144002217 144002373 + 1.75 NA Intergenic MIRb|SINE|MIR -1702 NM_001005281 135946 Hs.632031 NM_001005281 ENSG00000221813 OR6B1 OR7-3|OR7-9 olfactory receptor family 6 subfamily B member 1 protein-coding 484.5 chr14 53671691 53672247 + 1.75 NA Intergenic Intergenic 276515 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 430 chr1 78136913 78137337 + 1.75 NA 3' UTR (NM_017655, exon 6 of 6) 3' UTR (NM_017655, exon 6 of 6) 91159 NM_017655 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 261.25-15 chr7 53562885 53563155 + 1.75 NA Intergenic L1MA8|LINE|L1 248911 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 384 chr2 31874734 31875172 + 1.75 NA intron (NR_126032, intron 5 of 6) intron (NR_126032, intron 5 of 6) -70973 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 455 chr8 87448038 87448476 + 1.75 NA Intergenic Intergenic 425758 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 356-3 chr5 101222640 101223152 + 1.75 NA Intergenic Intergenic -319614 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 352.25 chr10 74150062 74150389 + 1.75 NA promoter-TSS (NM_006721) promoter-TSS (NM_006721) 603 NM_001320264 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 273.25-8 chr15 68935777 68936023 + 1.75 NA intron (NM_001184780, intron 1 of 15) intron (NM_001184780, intron 1 of 15) 5375 NM_145658 246777 Hs.657932 NM_145658 ENSG00000258484 SPESP1 ESP|SP-ESP sperm equatorial segment protein 1 protein-coding 351.75-6 chr18 62810322 62810656 + 1.75 NA intron (NM_194449, intron 1 of 16) MER44A|DNA|TcMar-Tigger 94948 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 258.25-8 chr14 59481600 59481830 + 1.75 NA intron (NM_144581, intron 1 of 4) intron (NM_144581, intron 1 of 4) 1860 NM_001331159 112849 Hs.729061 NM_144581 ENSG00000126790 L3HYPDH C14orf149 trans-L-3-hydroxyproline dehydratase protein-coding 441.25-2 chr5 154679084 154679555 + 1.75 NA Intergenic MIRb|SINE|MIR -3660 NM_001367715 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 212.5-34 chr3 139486359 139486502 + 1.75 NA intron (NR_121609, intron 3 of 4) (TA)n|Simple_repeat|Simple_repeat -9914 NM_004164 5948 Hs.655516 NM_004164 ENSG00000114113 RBP2 CRABP-II|CRBP2|CRBPII|RBPC2 retinol binding protein 2 protein-coding 263.75-17 chr5 153768459 153768678 + 1.75 NA intron (NM_000827, intron 12 of 15) intron (NM_000827, intron 12 of 15) 130419 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 268.25-21 chr6 23969860 23970123 + 1.75 NA Intergenic HSMAR2|DNA|TcMar-Mariner -156224 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 264.75-20 chr7 108262443 108262719 + 1.75 NA intron (NM_001371133, intron 3 of 28) intron (NM_001371133, intron 3 of 28) -19196 NM_001371182 255-5 chr2 25548822 25549101 + 1.75 NA intron (NM_033147, intron 8 of 19) intron (NM_033147, intron 8 of 19) 101261 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 407.25 chr2 228415324 228415858 + 1.75 NA Intergenic Intergenic 195804 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 365.25-2 chr12 61378470 61378694 + 1.75 NA Intergenic (ATTC)n|Simple_repeat|Simple_repeat 814257 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 331.5 chr16 72756690 72756961 + 1.75 NA Intergenic L1MB3|LINE|L1 -91855 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 196.5-60 chr8 117197784 117197982 + 1.75 NA Intergenic Intergenic 62888 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 375.5-4 chr19 28413341 28413764 + 1.75 NA Intergenic Intergenic -193136 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 438.5 chr2 136643402 136643787 + 1.75 NA Intergenic Intergenic -121951 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 423 chr8 118298943 118299251 + 1.75 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -187278 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 274.75-7 chr18 39847706 39847926 + 1.75 NA intron (NR_151703, intron 1 of 8) intron (NR_151703, intron 1 of 8) 6107 NR_151703 105372079 NR_151703 ENSG00000283503 LINC01902 - long intergenic non-protein coding RNA 1902 ncRNA 322.75-6 chr8 128993743 128994179 + 1.75 NA Intergenic Intergenic -27960 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 420-2 chr8 83031805 83032209 + 1.75 NA Intergenic L1MC2|LINE|L1 119903 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 203.75-49 chr8 104014566 104014774 + 1.75 NA intron (NM_001282881, intron 16 of 20) intron (NM_001282881, intron 16 of 20) 195450 NM_001348509 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 394.25 chr4 111390517 111390775 + 1.75 NA Intergenic L2|LINE|L2 -529999 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 315.5 chr1 45941720 45941979 + 1.75 NA intron (NM_001324321, intron 3 of 28) L1ME1|LINE|L1 77501 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 232.75-37 chr9 6882218 6882414 + 1.75 NA intron (NR_148680, intron 6 of 21) intron (NR_148680, intron 6 of 21) 124966 NR_148679 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 251-11 chr7 30762665 30762964 + 1.75 NA intron (NR_037598, intron 2 of 19) (TATC)n|Simple_repeat|Simple_repeat -8603 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 382 chr4 107121063 107121396 + 1.75 NA Intergenic Intergenic -84916 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 348.5-4 chr2 156739431 156739727 + 1.75 NA Intergenic Intergenic 303200 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 377.25-2 chr2 17145877 17146141 + 1.75 NA Intergenic Intergenic 372431 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 236.75-19 chr3 193687574 193687878 + 1.75 NA intron (NM_130831, intron 26 of 27) intron (NM_130831, intron 26 of 27) -60394 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 446.25 chr15 91358458 91358992 + 1.75 NA Intergenic Intergenic -104614 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 379-5 chr6 10091054 10091412 + 1.75 NA Intergenic Intergenic -313269 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 272.25-9 chr2 129512574 129512782 + 1.75 NA Intergenic Intergenic -238787 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 257-9 chr4 100664026 100664199 + 1.75 NA intron (NR_046811, intron 3 of 3) intron (NR_046811, intron 3 of 3) 11001 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 440.25-2 chr1 240928667 240929285 + 1.75 NA intron (NM_001282773, intron 4 of 15) intron (NM_001282773, intron 4 of 15) -203296 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 453.25 chr3 61380983 61381432 + 1.75 NA Intergenic Intergenic -129746 NR_148921 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 353.25-2 chr4 62866093 62866458 + 1.75 NA Intergenic Intergenic -704510 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 273-10 chr3 100569664 100569831 + 1.75 NA intron (NM_001363876, intron 6 of 6) intron (NM_001363876, intron 6 of 6) -39854 NM_032787 84873 Hs.334511 NM_032787 ENSG00000144820 ADGRG7 GPR128 adhesion G protein-coupled receptor G7 protein-coding 407.75-2 chr2 81372075 81372674 + 1.75 NA Intergenic MIRc|SINE|MIR 94572 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 304.25-12 chr8 14583767 14584080 + 1.75 NA intron (NM_139167, intron 1 of 7) L4_A_Mam|LINE|RTE-X 269587 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 476.25 chr14 48988490 48988896 + 1.75 NA Intergenic Intergenic 597687 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 491 chr1 73173793 73174335 + 1.75 NA Intergenic LTR16C|LTR|ERVL -132106 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 214.5-13 chr14 82632612 82632757 + 1.75 NA Intergenic Intergenic -9948 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 405.75-3 chr8 88145003 88145512 + 1.75 NA intron (NM_005941, intron 4 of 9) Tigger3a|DNA|TcMar-Tigger 182226 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 309.25-2 chr10 13114810 13115103 + 1.75 NA intron (NM_001008213, intron 6 of 15) (AT)n|Simple_repeat|Simple_repeat 14793 NM_001008212 10133 Hs.332706 NM_021980 ENSG00000123240 OPTN ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP optineurin protein-coding 472.5 chr14 53672950 53673721 + 1.75 NA Intergenic Intergenic 275149 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 215.5-37 chr4 49657517 49657706 + 1.75 NA Intergenic (GAATG)n|Satellite|Satellite 670969 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 359.5-2 chr14 104035940 104036227 + 1.75 NA intron (NM_153046, intron 32 of 35) A-rich|Low_complexity|Low_complexity -49617 NM_001080464 374569 Hs.146239 NM_001080464 ENSG00000166183 ASPG C14orf76|GPA/WT|LYSOLP asparaginase protein-coding 238.75-7 chr11 43903649 43903918 + 1.75 NA intron (NM_139178, intron 8 of 9) intron (NM_139178, intron 8 of 9) 6480 NR_026952 729799 Hs.368920 NR_026952 ENSG00000213693 SEC14L1P1 - SEC14 like 1 pseudogene 1 pseudo 618.5 chr8 91454014 91454532 + 1.75 NA Intergenic MIR|SINE|MIR 204954 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 366.25-3 chr17 63070453 63070812 + 1.75 NA intron (NM_025185, intron 2 of 25) MER58B|DNA|hAT-Charlie 104397 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 428.75 chr4 32794959 32795275 + 1.75 NA Intergenic Intergenic 444079 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 435.5 chr14 38788420 38788821 + 1.75 NA intron (NR_039982, intron 4 of 4) intron (NR_039982, intron 4 of 4) -93976 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 303.75-8 chr6 101147584 101147921 + 1.75 NA Intergenic Intergenic -251233 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 374.75-2 chr8 88065378 88065682 + 1.75 NA intron (NM_005941, intron 7 of 9) intron (NM_005941, intron 7 of 9) -191515 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 613.75 chr8 52160633 52161594 + 1.75 NA intron (NM_014682, intron 14 of 25) intron (NM_014682, intron 14 of 25) -33249 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 293-4 chr14 43466747 43467148 + 1.75 NA Intergenic Intergenic 1040336 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 507.5 chr1 60013512 60014060 + 1.75 NA intron (NM_152377, intron 8 of 11) L1M6|LINE|L1 59984 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 284.75-10 chr3 63525109 63525452 + 1.75 NA intron (NM_001130003, intron 3 of 5) intron (NM_001130003, intron 3 of 5) 24771 NR_046677 100874016 Hs.441275 NR_046677 ENSG00000241359 SYNPR-AS1 - SYNPR antisense RNA 1 ncRNA 255.5-40 chr8 109475289 109475541 + 1.75 NA intron (NM_177531, intron 51 of 77) intron (NM_177531, intron 51 of 77) -64285 NM_198120 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 321-5 chr8 124657896 124658104 + 1.75 NA intron (NM_001282971, intron 3 of 14) MLT1A0|LTR|ERVL-MaLR 70473 NM_001363294 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 370.75 chr2 213974225 213974592 + 1.75 NA intron (NR_047660, intron 11 of 14) intron (NR_047660, intron 11 of 14) 216341 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 638.75 chr6 156614949 156615404 + 1.75 NA Intergenic THE1D|LTR|ERVL-MaLR -162679 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 410 chr7 42611427 42611866 + 1.75 NA Intergenic Intergenic 94801 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 309.5-5 chr4 11221124 11221535 + 1.75 NA Intergenic L1M5|LINE|L1 -147498 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 366.75 chr15 100219772 100220151 + 1.75 NA intron (NM_139057, intron 7 of 21) MIR|SINE|MIR 122014 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 429.75 chr1 55466611 55467039 + 1.75 NA Intergenic Intergenic 241184 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 224.75-39 chr7 52218935 52219145 + 1.75 NA Intergenic Intergenic -816593 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 281.5-11 chr14 61871047 61871339 + 1.75 NA intron (NM_001367656, intron 1 of 7) L1ME1|LINE|L1 -56502 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 330.25-3 chr13 80213625 80214243 + 1.75 NA Intergenic Intergenic 125725 NM_001318538 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 444.5 chr17 69565806 69566534 + 1.75 NA Intergenic Intergenic -27817 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 588.5 chr10 67956379 67957204 + 1.75 NA intron (NM_001278185, intron 18 of 23) intron (NM_001278185, intron 18 of 23) 54092 NR_131184 100009667 NR_131184 POU5F1P5 Oct4-pg5 POU class 5 homeobox 1 pseudogene 5 pseudo 335.5-5 chr5 23713612 23714113 + 1.75 NA Intergenic L1PA16|LINE|L1 206207 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 180.5-67 chr7 90680949 90681074 + 1.75 NA intron (NM_001287135, intron 2 of 14) intron (NM_001287135, intron 2 of 14) -28387 NM_012395 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 269.5-14 chr4 146198666 146198899 + 1.75 NA Intergenic AluY|SINE|Alu -15756 NM_001354631 345051 Hs.170876 NM_001354631 ENSG00000250673 REELD1 - reeler domain containing 1 protein-coding 398.5-4 chr8 114803087 114803658 + 1.75 NA Intergenic Intergenic 864641 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 325.75-2 chr12 16636856 16637110 + 1.75 NA Intergenic Intergenic -28769 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 554.75 chr1 162310471 162311025 + 1.75 NA intron (NM_014697, intron 4 of 9) intron (NM_014697, intron 4 of 9) -31798 NR_030283 693141 NR_030283 ENSG00000207729 MIR556 MIRN556|hsa-mir-556|mir-556 microRNA 556 ncRNA 442 chr5 19807854 19808392 + 1.75 NA intron (NM_001349559, intron 3 of 12) intron (NM_001349559, intron 3 of 12) 78149 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 315.5-13 chr9 27295292 27295577 + 1.75 NA intron (NM_001161585, intron 2 of 6) intron (NM_001161585, intron 2 of 6) 1705 NM_001161585 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 394.75-2 chr9 73602524 73602868 + 1.75 NA Intergenic Intergenic 450831 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 336.25 chr13 76953665 76953890 + 1.75 NA intron (NM_001258406, intron 3 of 4) MIR3|SINE|MIR 5266 NM_001258406 730249 Hs.160789 NM_001258406 ENSG00000102794 ACOD1 CAD|IRG1 aconitate decarboxylase 1 protein-coding 408.25-4 chr5 76743226 76743540 + 1.75 NA Intergenic L1ME4c|LINE|L1 27257 NM_001992 2149 Hs.482562 NM_001992 ENSG00000181104 F2R CF2R|HTR|PAR-1|PAR1|TR coagulation factor II thrombin receptor protein-coding 474-2 chr8 126684120 126684539 + 1.75 NA Intergenic Intergenic -125851 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 355 chr2 196010826 196011400 + 1.75 NA intron (NM_018897, intron 10 of 64) L1MA4|LINE|L1 57724 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 458.25 chr3 174769063 174769772 + 1.75 NA Intergenic Intergenic -89917 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 336.5-10 chr9 28514536 28514980 + 1.75 NA intron (NM_152570, intron 2 of 6) Tigger1|DNA|TcMar-Tigger 204547 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 344.75-3 chr21 29206653 29207042 + 1.75 NA intron (NR_027072, intron 1 of 1) MamRTE1|LINE|RTE-BovB 13353 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 620 chr7 79113219 79113752 + 1.75 NA intron (NM_001301128, intron 1 of 20) Tigger6a|DNA|TcMar-Tigger 104497 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 310-2 chr6 22606785 22607001 + 1.75 NA Intergenic Intergenic 37327 NM_138574 154150 Hs.629246 NM_138574 ENSG00000112273 HDGFL1 HRP-1|Hdgfrp1|PWWP1|dJ309H15.1 HDGF like 1 protein-coding 440.25 chr1 91915962 91916346 + 1.75 NA Intergenic MER21A|LTR|ERVL -10152 NM_001195684 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 380 chr7 1626839 1627127 + 1.75 NA Intergenic L1MB5|LINE|L1 12513 NR_001288 260341 Hs.534596 NR_001288 TFAMP1 MTTF1|TCF6L1 transcription factor A, mitochondrial pseudogene 1 pseudo 205.25-18 chr2 180174068 180174400 + 1.75 NA Intergenic L1MA8|LINE|L1 -166937 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 231.5-9 chr18 64622658 64622875 + 1.75 NA Intergenic Intergenic -362711 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 181.5-9 chr10 61439687 61439803 + 1.75 NA intron (NR_134508, intron 1 of 6) MIRb|SINE|MIR -12894 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 520.75 chr1 178891224 178891989 + 1.75 NA intron (NM_001286247, intron 14 of 18) (TT)n|Simple_repeat|Simple_repeat -20529 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 495.5-2 chr8 138976428 138976920 + 1.75 NA Intergenic Intergenic -62633 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 469.5 chr1 98962295 98962585 + 1.75 NA intron (NM_001037317, intron 1 of 5) L2c|LINE|L2 -41836 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 432.75-2 chr14 30891949 30892323 + 1.75 NA Intergenic Intergenic -2328 NR_038356 100506071 Hs.729195 NR_038356 ENSG00000258525 LOC100506071 - uncharacterized LOC100506071 ncRNA 471 chr9 42388727 42389396 + 1.75 NA Intergenic Intergenic 180288 NR_126050 103908605 Hs.721139 NR_126050 LOC103908605 - uncharacterized LOC103908605 ncRNA 488.5 chr14 67873978 67874576 + 1.75 NA intron (NM_133509, intron 5 of 10) intron (NM_133509, intron 5 of 10) 50685 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 417.25 chr3 77508307 77508676 + 1.75 NA intron (NM_001290039, intron 5 of 26) intron (NM_001290039, intron 5 of 26) 410479 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 506-3 chr7 8742935 8743403 + 1.75 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 309560 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 450.5-3 chr2 22904646 22905133 + 1.75 NA Intergenic Intergenic 368410 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 335-4 chr3 195884094 195884478 + 1.75 NA intron (NM_001010938, intron 4 of 14) L1ME4a|LINE|L1 -1891 NR_106887 102465977 NR_106887 ENSG00000276489 MIR6829 hsa-mir-6829 microRNA 6829 ncRNA 192.5-14 chr15 24295341 24295480 + 1.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -125462 NR_152824 791115 Hs.560378 NR_026647 ENSG00000260551 PWRN2 NCRNA00199 Prader-Willi region non-protein coding RNA 2 ncRNA 357.75 chr10 81109170 81109511 + 1.75 NA Intergenic Intergenic 459543 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 295.75-3 chr18 12599584 12599764 + 1.75 NA intron (NM_020148, intron 2 of 15) L1MC4|LINE|L1 57058 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 375-2 chr20 15681813 15682212 + 1.75 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 241302 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 230.5-8 chr11 114381721 114381934 + 1.75 NA Intergenic Intergenic -1788 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 172.25-51 chr4 36496690 36497044 + 1.75 NA non-coding (NR_149124, exon 5 of 5) non-coding (NR_149124, exon 5 of 5) -70439 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 285.25-10 chr7 135033565 135033755 + 1.75 NA intron (NR_160300, intron 6 of 16) intron (NR_160300, intron 6 of 16) 47152 NM_001345850 340351 Hs.648616 NM_178563 ENSG00000146856 AGBL3 CCP3 ATP/GTP binding protein like 3 protein-coding 283.5-20 chr8 119438426 119438697 + 1.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR 22115 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 516.25 chr20 44980897 44981425 + 1.75 NA intron (NM_001352385, intron 3 of 11) AluSx3|SINE|Alu 14649 NR_147975 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 272.5-4 chr11 10189643 10189879 + 1.75 NA intron (NM_030962, intron 2 of 39) intron (NM_030962, intron 2 of 39) 104446 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 464.5-2 chr4 80563587 80563961 + 1.75 NA intron (NM_152770, intron 2 of 5) L1M1|LINE|L1 228054 NM_001206997 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 502.5 chr10 92092150 92093034 + 1.5 NA intron (NM_001178137, intron 7 of 9) AluSz|SINE|Alu 150687 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 386.5 chr14 85791862 85792119 + 1.5 NA Intergenic Intergenic -142688 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 339-5 chr8 116774562 116774804 + 1.5 NA TTS (NM_032334) TTS (NM_032334) 8159 NM_032334 84294 Hs.86970 NM_032334 ENSG00000147679 UTP23 C8orf53 UTP23 small subunit processome component protein-coding 283-11 chr7 84390600 84391165 + 1.5 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -141594 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 210-10 chr14 65229271 65229439 + 1.5 NA Intergenic Intergenic -7008 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 296 chr1 45378282 45378638 + 1.5 NA intron (NM_007170, intron 4 of 10) MLT1H1|LTR|ERVL-MaLR -37990 NM_001293192 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 345 chr4 32050881 32051225 + 1.5 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -28631 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 343.5-5 chr3 158303749 158304249 + 1.5 NA intron (NM_001271838, intron 5 of 9) intron (NM_001271838, intron 5 of 9) 193910 NM_001271838 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|MRT70|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 282.75-12 chr6 155366609 155366858 + 1.5 NA Intergenic Intergenic -52249 NR_146725 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 405.75-2 chr2 81140519 81140941 + 1.5 NA Intergenic L1MA9|LINE|L1 326216 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 480.75 chrX 26940737 26941157 + 1.5 NA Intergenic Intergenic 382610 NR_001559 139538 Hs.447377 NR_001559 ENSG00000259849 VENTXP1 CT18|NA88A|VENTX2P1 VENT homeobox pseudogene 1 pseudo 331.5-7 chr6 101004146 101004593 + 1.5 NA Intergenic L1PREC2|LINE|L1 -122997 NM_022091 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 303.5-4 chr11 83392021 83392511 + 1.5 NA Intergenic L1MB3|LINE|L1 -105859 NM_001286120 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 389.25 chr5 87755982 87756398 + 1.5 NA Intergenic Intergenic 94148 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 265-5 chr2 18808745 18809048 + 1.5 NA Intergenic L1MEc|LINE|L1 218075 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 315.75-5 chr6 166286974 166287335 + 1.5 NA Intergenic MIR|SINE|MIR 21238 NM_175922 285800 Hs.731862 NM_175922 ENSG00000176381 PRR18 - proline rich 18 protein-coding 239-10 chr2 150080191 150080352 + 1.5 NA Intergenic L1MA4A|LINE|L1 176736 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 191-14 chr11 110415762 110415990 + 1.5 NA Intergenic Intergenic -14072 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 211.25-9 chr12 40245897 40246087 + 1.5 NA intron (NM_198578, intron 7 of 50) L1MEd|LINE|L1 20995 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 171.25-66 chr8 129178314 129178605 + 1.5 NA Intergenic MIRb|SINE|MIR 62781 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 333.75 chr2 55417431 55417711 + 1.5 NA intron (NM_001254943, intron 2 of 33) (AT)n|Simple_repeat|Simple_repeat 2285 NM_001135597 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL coiled-coil domain containing 88A protein-coding 285.5-5 chr11 86724497 86724865 + 1.5 NA Intergenic Tigger7|DNA|TcMar-Tigger -52045 NM_001351934 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 206.5-17 chr14 81801658 81802020 + 1.5 NA Intergenic Intergenic -58701 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 438.75 chr8 83573625 83574130 + 1.5 NA Intergenic Intergenic 170119 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 290-6 chr8 117230426 117230763 + 1.5 NA Intergenic Intergenic 95599 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 260.25-2 chr1 180325376 180325709 + 1.5 NA intron (NM_032360, intron 6 of 7) L1MA2|LINE|L1 -50861 NR_037642 100527964 Hs.496545 NR_037642 ENSG00000230124 LHX4-AS1 - LHX4 antisense RNA 1 ncRNA 344.5-2 chr14 47009111 47009343 + 1.5 NA intron (NM_001113498, intron 8 of 16) intron (NM_001113498, intron 8 of 16) 334019 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 286.5-10 chr4 120872889 120873264 + 1.5 NA intron (NM_001300824, intron 2 of 13) AluSz|SINE|Alu 49790 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 288-6 chr2 66166496 66166824 + 1.5 NA Intergenic L1M5|LINE|L1 191668 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 193.5-7 chr10 31559998 31560176 + 1.5 NA Intergenic L1MA7|LINE|L1 -160332 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 237.75-2 chr1 93115672 93115933 + 1.5 NA intron (NM_007358, intron 6 of 14) intron (NM_007358, intron 6 of 14) 36519 NM_007358 22823 Hs.31016 NM_007358 ENSG00000143033 MTF2 M96|PCL2|TDRD19A|dJ976O13.2 metal response element binding transcription factor 2 protein-coding 263-11 chr5 7568132 7568348 + 1.5 NA intron (NM_020546, intron 3 of 24) intron (NM_020546, intron 3 of 24) 172102 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 286.25-8 chr5 51300018 51300411 + 1.5 NA Intergenic Intergenic 83118 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 314.5-4 chr18 72748605 72748854 + 1.5 NA intron (NR_148694, intron 10 of 11) intron (NR_148694, intron 10 of 11) 104653 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 278.5-12 chr4 53532587 53532925 + 1.5 NA intron (NM_001126328, intron 2 of 10) intron (NM_001126328, intron 2 of 10) 25513 NM_032622 84708 Hs.518760 NM_032622 ENSG00000072201 LNX1 LNX|MPDZ|PDZRN2 ligand of numb-protein X 1 protein-coding 562.25 chr1 188971083 188971643 + 1.5 NA Intergenic Intergenic 1504647 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 341.75-4 chr8 134238716 134239210 + 1.5 NA Intergenic L1MD2|LINE|L1 352467 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 236.25-29 chr6 69085355 69085591 + 1.5 NA intron (NM_001704, intron 17 of 31) intron (NM_001704, intron 17 of 31) 450191 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 256.5-16 chr6 152486688 152487050 + 1.5 NA intron (NM_182961, intron 12 of 145) intron (NM_182961, intron 12 of 145) 106339 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 270-7 chr2 190736094 190736318 + 1.5 NA Intergenic Intergenic 77048 NM_001321314 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 205.5-27 chr21 27837798 27838050 + 1.5 NA Intergenic Intergenic 115545 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 440-2 chr8 91107801 91108387 + 1.5 NA intron (NM_001354470, intron 1 of 3) intron (NM_001354470, intron 1 of 3) 5475 NM_001354470 100130742 Hs.733070 NM_001129890 ENSG00000214954 LRRC69 - leucine rich repeat containing 69 protein-coding 245.5-23 chr4 18748186 18748450 + 1.5 NA Intergenic L2|LINE|L2 -726443 NM_001365659 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 219.75-12 chr12 55043206 55043410 + 1.5 NA Intergenic L1MC3|LINE|L1 23334 NM_021191 58158 Hs.591024 NM_021191 ENSG00000123307 NEUROD4 ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4 neuronal differentiation 4 protein-coding 297.75-9 chr3 82184441 82184717 + 1.5 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 198437 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 247.5-34 chr8 30488128 30488454 + 1.5 NA intron (NM_001008710, intron 4 of 8) intron (NM_001008710, intron 4 of 8) -102890 NR_046205 100128750 Hs.126813 NR_046205 ENSG00000254109 RBPMS-AS1 - RBPMS antisense RNA 1 ncRNA 371.5-2 chr15 27667630 27667977 + 1.5 NA Intergenic Intergenic 431512 NM_000275 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 445.75 chr4 53414833 53415417 + 1.5 NA intron (NM_001134937, intron 10 of 17) intron (NM_001134937, intron 10 of 17) 37472 NM_001134937 81608 Hs.555109 NM_030917 ENSG00000145216 FIP1L1 FIP1|Rhe|hFip1 factor interacting with PAPOLA and CPSF1 protein-coding 210.75-11 chr11 114689880 114690050 + 1.5 NA intron (NM_182495, intron 2 of 5) L1PA17|LINE|L1 11438 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 180.5-71 chr8 132703179 132703505 + 1.5 NA Intergenic Intergenic -27797 NR_073525 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 373.75-3 chr5 89295108 89295599 + 1.5 NA intron (NR_136219, intron 7 of 9) intron (NR_136219, intron 7 of 9) -391248 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 482.75-2 chr3 190006979 190007566 + 1.5 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 113625 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 207.75-48 chr8 29653448 29653593 + 1.5 NA Intergenic Intergenic 94589 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 317-7 chrUn_KI270336v1 453 989 + 1.5 NA NA SAR|Satellite|Satellite NA NA 199.5-43 chr5 38019512 38019763 + 1.5 NA Intergenic Intergenic -6060 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 304.5-3 chr3 115867125 115867344 + 1.5 NA intron (NM_001318915, intron 3 of 8) intron (NM_001318915, intron 3 of 8) 37892 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 258.75-21 chr8 54655808 54656023 + 1.5 NA Intergenic Intergenic 39819 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 261.5-6 chr15 97835356 97835574 + 1.5 NA intron (NR_024172, intron 1 of 2) intron (NR_024172, intron 1 of 2) 38964 NR_024173 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 284-2 chr18 70985643 70985866 + 1.5 NA Intergenic THE1D-int|LTR|ERVL-MaLR -334800 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 218.5-21 chr21 29863172 29863381 + 1.5 NA intron (NM_000830, intron 1 of 16) MER5A|DNA|hAT-Charlie 76720 NM_001330994 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 152.25-45 chr2 62982594 62982714 + 1.5 NA intron (NM_001142615, intron 15 of 22) intron (NM_001142615, intron 15 of 22) 65057 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 276.5-19 chr9 99222021 99222229 + 1.5 NA promoter-TSS (NM_033087) promoter-TSS (NM_033087) -157 NM_006808 10952 Hs.191887 NM_006808 ENSG00000106803 SEC61B - SEC61 translocon beta subunit protein-coding 150.5-76 chr3 88993265 88993417 + 1.5 NA Intergenic Intergenic -114280 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 399.75 chr8 81658663 81659018 + 1.5 NA 3' UTR (NM_001144879, exon 8 of 8) 3' UTR (NM_001144879, exon 8 of 8) 27485 NM_005536 3612 Hs.656694 NM_005536 ENSG00000133731 IMPA1 IMP|IMPA|MRT59 inositol monophosphatase 1 protein-coding 422.5-2 chr4 114819755 114820142 + 1.5 NA Intergenic Intergenic 163189 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 453.5-2 chr8 121154053 121154802 + 1.5 NA Intergenic Intergenic -342381 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 315.5-10 chr7 45927732 45928112 + 1.5 NA Intergenic L1ME1|LINE|L1 -6650 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 157-86 chr6 165431989 165432149 + 1.5 NA intron (NM_006661, intron 8 of 22) L2a|LINE|L2 -122464 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 332-6 chr7 34774845 34775266 + 1.5 NA intron (NR_015356, intron 1 of 4) ERV3-16A3_I-int|LTR|ERVL -16783 NR_033664 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 388-4 chr6 91670363 91670825 + 1.5 NA intron (NR_104154, intron 2 of 3) intron (NR_104154, intron 2 of 3) 19834 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 209.5-21 chr17 53743537 53743785 + 1.5 NA Intergenic MIR|SINE|MIR -79266 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 261-7 chr14 60083854 60084194 + 1.5 NA Intergenic Intergenic -7887 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 281-6 chr2 89777748 89777974 + 1.5 NA Intergenic Intergenic -139954 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 265-12 chr4 182135792 182136069 + 1.5 NA Intergenic Intergenic 8585 NR_125905 90768 Hs.175465 NR_027107 TENM3-AS1 - TENM3 antisense RNA 1 ncRNA 186.75-14 chr11 11352350 11352572 + 1.5 NA exon (NM_001256686, exon 1 of 1) exon (NM_001256686, exon 1 of 1) 789 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 285.5-6 chr14 54584503 54584820 + 1.5 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 17049 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 233.5-5 chr18 4303717 4303992 + 1.5 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 39252 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 313-5 chrX 117233284 117233633 + 1.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -415598 NR_145523 100126447 Hs.695847 NR_145523 LOC100126447 - uncharacterized LOC100126447 ncRNA 173.25-5 chr10 61414642 61414784 + 1.5 NA non-coding (NR_134508, exon 6 of 7) non-coding (NR_134508, exon 6 of 7) -37926 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 343.75-8 chr5 108820649 108821074 + 1.5 NA intron (NM_001308028, intron 3 of 17) AluSg|SINE|Alu 71913 NR_146155 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 421 chr3 79581548 79581977 + 1.5 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) 73875 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 254.25-17 chr8 60033149 60033484 + 1.5 NA Intergenic Intergenic 248084 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 418.5-3 chr8 107277761 107278173 + 1.5 NA intron (NM_001199859, intron 7 of 8) L1MC4|LINE|L1 58548 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 276-8 chr8 49076657 49077125 + 1.5 NA TTS (NM_001256596) TTS (NM_001256596) 4547 NM_001256598 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 199.25-48 chr4 101275514 101275693 + 1.5 NA intron (NM_001130691, intron 1 of 12) intron (NM_001130691, intron 1 of 12) -34731 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 360.75-5 chr8 13307967 13308335 + 1.5 NA intron (NM_024767, intron 4 of 4) intron (NM_024767, intron 4 of 4) -31367 NM_001348083 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 335.25-4 chr7 91304919 91305143 + 1.5 NA Intergenic Intergenic 40598 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 266.5-6 chr15 98108995 98109243 + 1.5 NA Intergenic Intergenic -20366 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 379.5-3 chr18 3773219 3773766 + 1.5 NA intron (NM_001242762, intron 2 of 9) intron (NM_001242762, intron 2 of 9) 71866 NM_001003809 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 188.75-34 chr2 185195173 185195477 + 1.5 NA Intergenic Tigger3c|DNA|TcMar-Tigger -28253 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 254-8 chr4 101066199 101066486 + 1.5 NA intron (NM_001130691, intron 8 of 12) MIR3|SINE|MIR 174530 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 456 chr2 104047004 104047353 + 1.5 NA Intergenic Intergenic 361154 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 257.75-24 chr8 136721725 136721921 + 1.5 NA intron (NR_147196, intron 2 of 5) L2a|LINE|L2 191025 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 242.5-41 chrX 62784247 62784445 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 566986 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 364 chr10 10113377 10113787 + 1.5 NA Intergenic Intergenic 54860 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 355.5-5 chr4 41945000 41945370 + 1.5 NA intron (NM_018126, intron 5 of 6) intron (NM_018126, intron 5 of 6) 9756 NM_018126 55161 Hs.31082 NM_018126 ENSG00000109133 TMEM33 1600019D15Rik|Pom33|SHINC-3|SHINC3 transmembrane protein 33 protein-coding 260.75-2 chr1 185862287 185862696 + 1.5 NA intron (NM_031935, intron 2 of 106) L2a|LINE|L2 128100 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 317-8 chrX 57608461 57608719 + 1.5 NA Intergenic L1M5|LINE|L1 16754 NM_007157 158586 Hs.156257 NM_007157 ENSG00000198455 ZXDB ZNF905|dJ83L6.1 zinc finger X-linked duplicated B protein-coding 225.5-30 chr3 52555424 52555704 + 1.5 NA intron (NM_001350075, intron 26 of 29) intron (NM_001350075, intron 26 of 29) 18959 NM_001124767 440957 Hs.660577 NM_001124767 ENSG00000168273 SMIM4 C3orf78 small integral membrane protein 4 protein-coding 282.5-14 chr7 40493491 40493847 + 1.5 NA intron (NM_024728, intron 11 of 14) intron (NM_024728, intron 11 of 14) 358693 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 309.75-2 chr1 232307483 232307825 + 1.5 NA Intergenic Intergenic 207954 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 424.75 chr2 185112175 185112771 + 1.5 NA Intergenic L1PA5|LINE|L1 54599 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 295.75-4 chr2 165249649 165250093 + 1.5 NA intron (NM_001040143, intron 2 of 27) intron (NM_001040143, intron 2 of 27) 8811 NM_001371247 206.25-22 chr20 3159926 3160154 + 1.5 NA promoter-TSS (NM_014948) promoter-TSS (NM_014948) -175 NM_014948 22888 Hs.654646 NM_014948 ENSG00000185019 UBOX5 RNF37|UBCE7IP5|UIP5|hUIP5 U-box domain containing 5 protein-coding 255.5-31 chr4 178081521 178081733 + 1.5 NA Intergenic Intergenic -173691 NR_108093 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 198.5-53 chr7 109460287 109460537 + 1.5 NA Intergenic L1M5|LINE|L1 499801 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 314.25-3 chr22 49174825 49175075 + 1.5 NA Intergenic L1MD3|LINE|L1 308180 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 247-19 chr6 36646467 36646827 + 1.5 NA Intergenic L1ME4b|LINE|L1 -24135 NR_037491 100500885 NR_037491 ENSG00000263894 MIR3925 - microRNA 3925 ncRNA 393.75-2 chr22 24899703 24899994 + 1.5 NA intron (NM_001098498, intron 18 of 23) L1MEd|LINE|L1 46847 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 341.75-2 chr2 83594242 83594595 + 1.5 NA Intergenic L1MB5|LINE|L1 71604 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 396.75 chr4 64975064 64975360 + 1.5 NA intron (NR_033976, intron 2 of 6) intron (NR_033976, intron 2 of 6) 29288 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 281.5-3 chr1 104619997 104620221 + 1.5 NA Intergenic L2c|LINE|L2 547086 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 185.5 chr1 22450124 22450340 + 1.5 NA Intergenic Intergenic -1619 NM_001330398 9923 Hs.418966 NM_014870 ENSG00000184677 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 345.75-4 chr6 142587509 142587965 + 1.5 NA intron (NR_027312, intron 1 of 2) L1ME2z|LINE|L1 50099 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 254.25-8 chr19 28310161 28310380 + 1.5 NA Intergenic Intergenic -296418 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 178-27 chr16 47209716 47209849 + 1.5 NA intron (NM_030790, intron 14 of 17) L1MD1|LINE|L1 65714 NR_110904 101927102 Hs.634652 NR_110903 ITFG1-AS1 - ITFG1 antisense RNA 1 ncRNA 319.75-2 chr3 130956523 130956906 + 1.5 NA intron (NM_001001485, intron 11 of 27) L1ME4a|LINE|L1 62124 NM_001001487 27032 Hs.584884 NM_014382 ENSG00000017260 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase secretory pathway Ca2+ transporting 1 protein-coding 245.5-26 chr5 3292035 3292371 + 1.5 NA Intergenic Intergenic 114368 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 415.75-2 chr2 186916835 186917247 + 1.5 NA Intergenic Intergenic -67871 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 438.25 chr10 31850601 31851221 + 1.5 NA intron (NM_001270696, intron 6 of 17) intron (NM_001270696, intron 6 of 17) 58015 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 470.75-2 chr3 53583942 53584482 + 1.5 NA intron (NM_001128840, intron 3 of 47) intron (NM_001128840, intron 3 of 47) 89601 NM_001128840 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 307.5-5 chr3 162860137 162860470 + 1.5 NA Intergenic L1MA4|LINE|L1 442998 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 319.25-3 chr2 143755305 143755634 + 1.5 NA intron (NM_018460, intron 13 of 13) L3|LINE|CR1 -181598 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 366-4 chr8 76713124 76713599 + 1.5 NA intron (NM_024721, intron 3 of 10) intron (NM_024721, intron 3 of 10) -30086 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 366.5-3 chr17 53667035 53667399 + 1.5 NA Intergenic THE1C-int|LTR|ERVL-MaLR -155710 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 261.75-7 chr12 103862403 103862633 + 1.5 NA intron (NR_027249, intron 11 of 15) intron (NR_027249, intron 11 of 15) -21284 NM_001031701 51559 Hs.48428 NM_016575 ENSG00000111696 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 449.5 chr2 44744891 44745558 + 1.5 NA intron (NM_024766, intron 8 of 10) intron (NM_024766, intron 8 of 10) 193664 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 383.5-4 chr5 24052145 24052668 + 1.5 NA intron (NR_131245, intron 4 of 4) L1MA3|LINE|L1 101058 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 268.25-13 chr20 39966464 39966905 + 1.5 NA Intergenic Intergenic -37777 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 170.25-76 chr8 97949504 97949691 + 1.5 NA intron (NM_002380, intron 4 of 18) L1ME1|LINE|L1 80533 NM_002380 4147 Hs.189445 NM_002380 ENSG00000132561 MATN2 - matrilin 2 protein-coding 289.75-17 chr7 130038906 130039179 + 1.5 NA intron (NM_016478, intron 4 of 9) intron (NM_016478, intron 4 of 9) 12343 NM_001363701 51530 Hs.194157 NM_016478 ENSG00000091732 ZC3HC1 HSPC216|NIPA zinc finger C3HC-type containing 1 protein-coding 338-2 chr13 111221175 111221761 + 1.5 NA intron (NM_001330597, intron 5 of 18) (AT)n|Simple_repeat|Simple_repeat 18408 NM_001320853 8874 Hs.508738 NM_003899 ENSG00000102606 ARHGEF7 BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB Rho guanine nucleotide exchange factor 7 protein-coding 160.5-57 chr21 19951310 19951477 + 1.5 NA Intergenic Intergenic -51638 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 372.75 chr4 41038897 41039230 + 1.5 NA intron (NM_001330658, intron 3 of 15) MER20B|DNA|hAT-Charlie 175479 NM_001330656 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 304.25-10 chr5 132882972 132883291 + 1.5 NA intron (NM_014423, intron 20 of 20) intron (NM_014423, intron 20 of 20) 9463 NM_052971 116842 Hs.337588 NM_052971 ENSG00000164406 LEAP2 LEAP-2 liver enriched antimicrobial peptide 2 protein-coding 342-4 chr16 52060555 52060842 + 1.5 NA intron (NM_001242473, intron 1 of 5) intron (NM_001242473, intron 1 of 5) 13237 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 302.25-12 chr6 146655646 146656060 + 1.5 NA intron (NM_024694, intron 4 of 35) intron (NM_024694, intron 4 of 35) 56881 NM_024694 79747 Hs.720870 NM_024694 ENSG00000118492 ADGB C6orf103|CAPN16 androglobin protein-coding 391.5-6 chr8 107115826 107116285 + 1.5 NA Intergenic L2b|LINE|L2 220460 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 434.5 chr4 60606396 60606763 + 1.5 NA Intergenic Intergenic -316040 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 244.5-2 chr10 47009929 47010142 + 1.5 NA Intergenic L1M7|LINE|L1 98313 NM_001352539 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 411-2 chr5 117012726 117013105 + 1.5 NA Intergenic L1PA13|LINE|L1 -250706 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 201-2 chr1 33345229 33345463 + 1.5 NA intron (NM_198040, intron 8 of 13) intron (NM_198040, intron 8 of 13) 4553 NM_004427 1912 Hs.524271 NM_004427 ENSG00000134686 PHC2 EDR2|HPH2|PH2 polyhomeotic homolog 2 protein-coding 445.25 chr3 115989888 115990387 + 1.5 NA intron (NM_001318915, intron 3 of 8) intron (NM_001318915, intron 3 of 8) -85011 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 290.5-10 chr2 106738326 106738743 + 1.5 NA Intergenic L1MB5|LINE|L1 147494 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 413-2 chr8 108187616 108187962 + 1.5 NA Intergenic L1MC5|LINE|L1 60928 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 301.5-4 chr16 49306407 49306756 + 1.5 NA Intergenic L1MC5|LINE|L1 -24743 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 208.5-23 chr17 6592758 6593006 + 1.5 NA intron (NR_147088, intron 15 of 17) intron (NR_147088, intron 15 of 17) -36327 NM_001165966 83394 Hs.183983 NM_031220 ENSG00000091622 PITPNM3 ACKR6|CORD5|NIR1|RDGBA3 PITPNM family member 3 protein-coding 208.25-21 chr15 83918634 83918930 + 1.5 NA intron (NM_207517, intron 16 of 29) L2a|LINE|L2 -161405 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 433.25 chr18 6434015 6434543 + 1.5 NA Intergenic AluJr4|SINE|Alu -19020 NM_001365765 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 168-27 chr18 28122788 28122957 + 1.5 NA intron (NM_001792, intron 2 of 15) intron (NM_001792, intron 2 of 15) 54258 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 396.5-3 chr4 30354564 30355114 + 1.5 NA Intergenic Intergenic -365530 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 288.5-20 chr8 129086873 129087365 + 1.5 NA Intergenic Intergenic -121118 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 303-6 chr2 71855082 71855536 + 1.5 NA Intergenic MLT1H|LTR|ERVL-MaLR 292553 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 392.75-3 chr5 61481040 61481466 + 1.5 NA intron (NM_020928, intron 2 of 13) intron (NM_020928, intron 2 of 13) 148995 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 269-12 chr7 50305426 50305685 + 1.5 NA intron (NM_001291846, intron 1 of 4) intron (NM_001291846, intron 1 of 4) 839 NM_001291846 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 279.25-6 chr15 63198758 63199148 + 1.5 NA intron (NM_016530, intron 1 of 7) intron (NM_016530, intron 1 of 7) 9347 NM_016530 51762 Hs.389733 NM_016530 ENSG00000166128 RAB8B - RAB8B, member RAS oncogene family protein-coding 302.5-10 chr7 122055655 122055960 + 1.5 NA intron (NM_001206839, intron 26 of 28) Tigger14a|DNA|TcMar-Tigger 88442 NM_005763 10157 Hs.156738 NM_005763 ENSG00000008311 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 317.5-6 chr5 14991263 14991547 + 1.5 NA Intergenic L1MB4|LINE|L1 -119627 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 248.5-17 chr4 96921595 96921763 + 1.5 NA Intergenic L1PA15|LINE|L1 -445247 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 382.5-3 chr5 43764102 43764543 + 1.5 NA Intergenic L1M3|LINE|L1 -161092 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 323.5-7 chr4 45598011 45598458 + 1.5 NA Intergenic Intergenic 525820 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 415.25-2 chr4 53100208 53100679 + 1.5 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 238126 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 380.25-5 chr7 25785054 25785423 + 1.5 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) 4881 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 354.75-3 chr14 54104226 54104658 + 1.5 NA Intergenic Intergenic -147551 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 218-30 chr9 9270150 9270325 + 1.5 NA intron (NM_002839, intron 9 of 45) L1MA9|LINE|L1 412219 NR_121599 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 279 chr10 69346163 69346455 + 1.5 NA intron (NM_033496, intron 2 of 17) intron (NM_033496, intron 2 of 17) 27462 NM_000188 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 240-3 chr10 77618326 77618567 + 1.5 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 19362 NM_001014797 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 282.5-6 chr13 54448590 54448791 + 1.5 NA Intergenic Intergenic -136642 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 374-2 chr6 130867183 130867614 + 1.5 NA intron (NM_001350315, intron 12 of 15) intron (NM_001350315, intron 12 of 15) 39993 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 347.75-2 chr11 28759813 28760310 + 1.5 NA Intergenic MER117|DNA|hAT-Charlie -282513 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 333.5 chr1 10104583 10104904 + 1.5 NA intron (NM_006048, intron 5 of 26) intron (NM_006048, intron 5 of 26) 71785 NM_001105562 10277 Hs.593974 NM_006048 ENSG00000130939 UBE4B E4|HDNB1|UBOX3|UFD2|UFD2A ubiquitination factor E4B protein-coding 190.5-28 chr2 103242508 103242708 + 1.5 NA Intergenic Intergenic -258179 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 468-2 chr2 65738813 65739448 + 1.5 NA Intergenic Intergenic -306531 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 432.25-2 chr8 115848008 115848588 + 1.5 NA Intergenic L2b|LINE|L2 -179323 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 215-8 chr16 75923542 75923857 + 1.5 NA Intergenic Intergenic -197209 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 445.5 chr12 54448923 54449462 + 1.5 NA intron (NR_120487, intron 3 of 3) MLT1F|LTR|ERVL-MaLR 24410 NM_144594 121355 Hs.524476 NM_144594 ENSG00000170627 GTSF1 Cue110|FAM112B gametocyte specific factor 1 protein-coding 369.75-3 chr14 57083084 57083663 + 1.5 NA Intergenic AluSx4|SINE|Alu 185532 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 267.5-24 chr7 111224517 111224736 + 1.5 NA intron (NM_032549, intron 3 of 5) Charlie1a|DNA|hAT-Charlie 133499 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 320.25-4 chr2 28063603 28063947 + 1.5 NA intron (NM_199193, intron 7 of 13) MLT1K|LTR|ERVL-MaLR 67408 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 262.25-9 chr20 58475354 58475547 + 1.5 NA intron (NR_130908, intron 1 of 1) intron (NR_130908, intron 1 of 1) 39488 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 222.75-27 chr4 39022729 39023161 + 1.5 NA intron (NM_001303228, intron 1 of 6) L1ME2|LINE|L1 9464 NM_024943 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 161.5-12 chr1 232769643 232769817 + 1.5 NA Intergenic Intergenic -27015 NR_110683 101927683 Hs.520568 NR_110683 ENSG00000236497 LINC01744 - long intergenic non-protein coding RNA 1744 ncRNA 519.5 chr12 18773954 18774360 + 1.5 NA Intergenic L1ME3C|LINE|L1 36038 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 245.25-7 chr12 18460876 18461147 + 1.5 NA intron (NM_001288774, intron 18 of 32) intron (NM_001288774, intron 18 of 32) 199471 NM_001288772 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 325-4 chr9 28248266 28248531 + 1.5 NA intron (NM_152570, intron 5 of 6) L1MA2|LINE|L1 470907 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 167-30 chr17 59668826 59669004 + 1.5 NA exon (NM_004859, exon 14 of 32) exon (NM_004859, exon 14 of 32) 38683 NM_001015509 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 301.25-7 chr20 58403732 58403962 + 1.5 NA intron (NR_036633, intron 1 of 3) L2|LINE|L2 14618 NR_036633 9217 Hs.182625 NM_004738 ENSG00000124164 VAPB ALS8|VAMP-B|VAP-B VAMP associated protein B and C protein-coding 324.75 chr1 22037308 22037681 + 1.5 NA Intergenic Intergenic -11446 NR_110692 101928043 Hs.617422 NR_110692 ENSG00000228397 LINC01635 - long intergenic non-protein coding RNA 1635 ncRNA 228.5-10 chr10 67763918 67764361 + 1.5 NA Intergenic CpG -67944 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 272-3 chr10 104875534 104875822 + 1.5 NA intron (NM_014978, intron 2 of 26) intron (NM_014978, intron 2 of 26) -209462 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 329-6 chr7 9853487 9853995 + 1.5 NA Intergenic Intergenic 219471 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 426.75-2 chrX 35768313 35768808 + 1.5 NA Intergenic Intergenic -29782 NM_001370158 139604 NM_001099921 ENSG00000189023 MAGEB16 - MAGE family member B16 protein-coding 362.25 chr1 173303629 173304185 + 1.5 NA intron (NR_037845, intron 2 of 2) intron (NR_037845, intron 2 of 2) -96576 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 219-14 chr3 67816135 67816319 + 1.5 NA intron (NR_109992, intron 3 of 6) intron (NR_109992, intron 3 of 6) 161530 NR_109993 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 330.5-3 chr2 62989712 62990094 + 1.5 NA intron (NM_001354213, intron 17 of 24) intron (NM_001354213, intron 17 of 24) 57808 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 273-12 chr4 1115852 1116073 + 1.5 NA intron (NR_033768, intron 3 of 3) intron (NR_033768, intron 3 of 3) 2323 NR_134676 105374344 Hs.128102 NR_134676 ENSG00000251652 LOC105374344 - uncharacterized LOC105374344 ncRNA 233-18 chr2 125354727 125354946 + 1.5 NA Intergenic L1M5|LINE|L1 763149 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 556 chr6 67760220 67760615 + 1.5 NA Intergenic L1MA7|LINE|L1 -294934 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 243-7 chr18 4185028 4185225 + 1.5 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -79476 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 176.5-59 chr4 56068464 56068614 + 1.5 NA Intergenic L2a|LINE|L2 -101656 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 298.5-6 chr16 84108041 84108446 + 1.5 NA intron (NM_003791, intron 1 of 22) (AGCAGAC)n|Simple_repeat|Simple_repeat 8699 NM_003791 8720 Hs.75890 NM_003791 ENSG00000140943 MBTPS1 PCSK8|S1P|SEDKF|SKI-1 membrane bound transcription factor peptidase, site 1 protein-coding 357.75-5 chr4 96877473 96877824 + 1.5 NA Intergenic Intergenic -489278 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 358-4 chr4 64254489 64254787 + 1.5 NA Intergenic Intergenic 154812 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 172.25-54 chr4 81873560 81873690 + 1.5 NA Intergenic Intergenic -401718 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 359.25-3 chr13 64121669 64121937 + 1.5 NA Intergenic Intergenic -45792 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 307.5 chr11 109641116 109641423 + 1.5 NA Intergenic Intergenic 219079 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 205-41 chr5 31453630 31453788 + 1.5 NA intron (NM_013235, intron 19 of 34) intron (NM_013235, intron 19 of 34) 78384 NM_013235 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 195-46 chr8 107565580 107565945 + 1.5 NA Intergenic SATR1|Satellite|Satellite -67844 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 155-19 chr11 105536521 105536708 + 1.5 NA Intergenic L2a|LINE|L2 -73459 NM_001077243 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 297.5 chr1 179615500 179615822 + 1.5 NA intron (NM_001199092, intron 1 of 13) L3|LINE|CR1 9434 NM_001199092 163589 Hs.197354 NM_173533 ENSG00000162782 TDRD5 TUDOR3 tudor domain containing 5 protein-coding 406-3 chr8 91304048 91304318 + 1.5 NA intron (NM_134266, intron 4 of 18) MIR|SINE|MIR 54864 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 304-7 chr9 74357301 74357657 + 1.5 NA Intergenic L3|LINE|CR1 -14052 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 350.5 chr11 83766698 83767249 + 1.5 NA intron (NM_001142699, intron 18 of 27) MLT1D|LTR|ERVL-MaLR -84548 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 353.5-6 chr2 164163003 164163243 + 1.5 NA Intergenic L1MB8|LINE|L1 405372 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 314.5-5 chr2 36421812 36422121 + 1.5 NA intron (NM_016441, intron 2 of 16) MARNA|DNA|TcMar-Mariner 66188 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 268.5-24 chr7 74688960 74689205 + 1.5 NA non-coding (NR_110044, exon 4 of 4) non-coding (NR_110044, exon 4 of 4) 31364 NM_001163636 2969 Hs.647041 NM_001518 ENSG00000263001 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 347.5 chr1 227218463 227218893 + 1.5 NA intron (NM_001366019, intron 2 of 36) intron (NM_001366019, intron 2 of 36) 99814 NM_001366010 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 305.5-8 chr8 92234800 92235138 + 1.5 NA Intergenic Intergenic -131584 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 293.5-6 chr2 165686812 165687077 + 1.5 NA 3' UTR (NM_001172173, exon 7 of 7) 3' UTR (NM_001172173, exon 7 of 7) 107303 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 156.5-7 chr1 105896371 105896538 + 1.5 NA Intergenic Intergenic 131799 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 214.5-47 chr7 25033836 25034032 + 1.5 NA Intergenic Intergenic -53756 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 255-6 chr2 32109434 32109796 + 1.5 NA intron (NM_001363823, intron 4 of 16) intron (NM_001363823, intron 4 of 16) 46004 NM_001363823 6683 Hs.468091 NM_014946 ENSG00000021574 SPAST ADPSP|FSP2|SPG4 spastin protein-coding 255.5-11 chr16 81428279 81428529 + 1.5 NA Intergenic L1ME2z|LINE|L1 -16766 NM_198390 80790 Hs.594095 NM_030629 ENSG00000153815 CMIP TCMIP c-Maf inducing protein protein-coding 268-3 chr10 84290536 84290773 + 1.5 NA intron (NR_038220, intron 4 of 5) intron (NR_038220, intron 4 of 5) 10674 NR_038220 170425 Hs.434131 NR_038220 ENSG00000229404 LINC00858 CRCAL-2 long intergenic non-protein coding RNA 858 ncRNA 252.75-17 chr2 136592485 136592718 + 1.5 NA Intergenic Intergenic -172944 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 240.5-29 chr8 129864644 129864917 + 1.5 NA intron (NM_001353307, intron 6 of 13) intron (NM_001353307, intron 6 of 13) 75031 NM_001353295 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 187-36 chr4 85702588 85702729 + 1.5 NA intron (NM_001025616, intron 2 of 9) intron (NM_001025616, intron 2 of 9) -19810 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 429.75-2 chr2 72837752 72838187 + 1.5 NA Intergenic L1MB7|LINE|L1 -11936 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 172.5-86 chr9 75711618 75711805 + 1.5 NA Intergenic L1MC5|LINE|L1 -178933 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 690 chr2 56606436 56607244 + 1.5 NA Intergenic L1PA6|LINE|L1 -421070 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 311 chr1 27254073 27254444 + 1.5 NA intron (NM_001276252, intron 1 of 15) intron (NM_001276252, intron 1 of 15) 19626 NM_001276252 23038 Hs.469154 NM_015023 ENSG00000142784 WDTC1 ADP|DCAF9 WD and tetratricopeptide repeats 1 protein-coding 329-4 chr2 83916603 83916982 + 1.5 NA Intergenic L1MB8|LINE|L1 -373890 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 404.25-2 chr3 67944515 67944876 + 1.5 NA intron (NR_109992, intron 6 of 6) MamRep137|DNA|TcMar-Tigger -46897 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 295.75-7 chr8 130370762 130371316 + 1.5 NA intron (NM_001247996, intron 2 of 30) L1MB7|LINE|L1 72621 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 342-2 chr10 22215696 22216258 + 1.5 NA Intergenic Intergenic -5994 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 296.25-13 chr8 126234744 126235107 + 1.5 NA Intergenic Intergenic -90570 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 374.25-3 chr5 63394033 63394501 + 1.5 NA Intergenic Intergenic 568025 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 431.75 chr5 36628811 36629318 + 1.5 NA intron (NM_001289939, intron 2 of 8) intron (NM_001289939, intron 2 of 8) 22458 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 378 chr10 60145887 60146279 + 1.5 NA intron (NM_001204404, intron 23 of 43) intron (NM_001204404, intron 23 of 43) -5067 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 328.25-6 chr3 2175662 2176179 + 1.5 NA intron (NM_175607, intron 2 of 24) intron (NM_175607, intron 2 of 24) -31679 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 317.25 chr15 25339655 25340056 + 1.5 NA intron (NM_001354542, intron 11 of 11) intron (NM_001354542, intron 11 of 11) 61512 NR_001295 338428 NR_001295 ENSG00000274640 SNORD109A HBII-438A small nucleolar RNA, C/D box 109A snoRNA 192-57 chr9 100437154 100437346 + 1.5 NA intron (NM_001198806, intron 1 of 2) intron (NM_001198806, intron 1 of 2) -4656 NM_001198812 100526694 Hs.598100 NM_001198812 MSANTD3-TMEFF1 C9orf2|C9orf3-TMEFF1|C9orf30-TMEFF1|H7365|TMEFF1|TR-1 MSANTD3-TMEFF1 readthrough protein-coding 273.25-14 chr3 105948102 105948545 + 1.5 NA Intergenic L1ME1|LINE|L1 -78922 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 165-83 chr7 109828270 109828443 + 1.5 NA Intergenic L1MD3|LINE|L1 131857 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 243.75-11 chr2 167954942 167955211 + 1.5 NA 3' UTR (NM_013233, exon 18 of 18) 3' UTR (NM_013233, exon 18 of 18) -13932 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 292.75-8 chr7 43885919 43886284 + 1.5 NA intron (NM_001077663, intron 3 of 5) L2a|LINE|L2 -16584 NM_032014 64951 Hs.284286 NM_032014 ENSG00000062582 MRPS24 HSPC335|MRP-S24|S24mt|bMRP-47|bMRP47 mitochondrial ribosomal protein S24 protein-coding 383-2 chr5 9185864 9186283 + 1.5 NA intron (NM_003966, intron 11 of 22) intron (NM_003966, intron 11 of 22) -132178 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 323.25 chr14 46457035 46457732 + 1.5 NA intron (NR_102701, intron 5 of 5) L1ME2|LINE|L1 -13976 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 210.5-5 chr10 31610266 31610489 + 1.5 NA Intergenic L3|LINE|CR1 -210622 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 327.25-9 chrX 105024277 105024726 + 1.5 NA intron (NM_017416, intron 2 of 10) intron (NM_017416, intron 2 of 10) 196192 NM_031274 56157 Hs.567543 NM_031274 ENSG00000268629 TEX13A - testis expressed 13A protein-coding 347.5-3 chr11 115343910 115344520 + 1.5 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 10638 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 251.5-16 chr2 168533322 168533586 + 1.5 NA intron (NM_001256126, intron 1 of 10) L1P3|LINE|L1 -49489 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 364.5-2 chr7 41279239 41279572 + 1.5 NA Intergenic Intergenic 177801 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 369.25-2 chr19 32511056 32511558 + 1.5 NA Intergenic L1M4b|LINE|L1 -69883 NM_004708 9141 Hs.443831 NM_004708 ENSG00000105185 PDCD5 TFAR19 programmed cell death 5 protein-coding 217.25-30 chr21 22678177 22678462 + 1.5 NA Intergenic Intergenic -400965 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 265.25-10 chr2 59130461 59130923 + 1.5 NA Intergenic Intergenic -87016 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 383.5-3 chr2 159777572 159778062 + 1.5 NA intron (NM_001198764, intron 4 of 4) intron (NM_001198764, intron 4 of 4) 20391 NM_014880 9936 Hs.130014 NM_014880 ENSG00000241399 CD302 BIMLEC|CLEC13A|DCL-1|DCL1 CD302 molecule protein-coding 221.5-47 chr7 13330491 13330650 + 1.5 NA Intergenic (ATACAT)n|Simple_repeat|Simple_repeat 642937 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 295.5-5 chr22 39886308 39886703 + 1.5 NA intron (NM_152512, intron 2 of 6) L1MC2|LINE|L1 7255 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 308.25-4 chr6 133451898 133452110 + 1.5 NA intron (NM_001301013, intron 5 of 19) intron (NM_001301013, intron 5 of 19) 210505 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 266.25-10 chr3 111279589 111279963 + 1.5 NA Intergenic Intergenic 207960 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 265-14 chr5 69183269 69183713 + 1.5 NA Intergenic Intergenic -6092 NM_022909 64946 Hs.631967 NM_022909 ENSG00000153044 CENPH - centromere protein H protein-coding 315.5-12 chr8 104560545 104560981 + 1.5 NA intron (NM_013437, intron 1 of 6) L1MC5a|LINE|L1 28261 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 147.25-96 chr8 48865662 48865796 + 1.5 NA Intergenic MIR3|SINE|MIR 55700 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 441.5 chr1 32001760 32002341 + 1.5 NA Intergenic AluSx|SINE|Alu -11818 NR_073499 10657 Hs.445893 NM_006559 ENSG00000121774 KHDRBS1 Sam68|p62|p68 KH RNA binding domain containing, signal transduction associated 1 protein-coding 296.5-14 chr3 163524266 163524544 + 1.5 NA Intergenic Intergenic -221104 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 208.5-63 chr8 139179566 139179820 + 1.5 NA Intergenic MER61E|LTR|ERV1 -265652 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 418.5 chr15 99098710 99099041 + 1.5 NA Intergenic MER5A|DNA|hAT-Charlie -6205 NM_015286 23336 Hs.207106 NM_015286 ENSG00000182253 SYNM DMN|SYN synemin protein-coding 315-5 chr6 165426352 165426708 + 1.5 NA intron (NM_006661, intron 11 of 22) L1MB7|LINE|L1 -116925 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 240.5-20 chr5 18180248 18180534 + 1.5 NA Intergenic Intergenic 373117 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 551.75 chr2 88063803 88064502 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -3673 NM_001330364 150572 Hs.516176 NM_198274 ENSG00000115593 SMYD1 BOP|KMT3D|ZMYND18|ZMYND22 SET and MYND domain containing 1 protein-coding 333-2 chr9 81648802 81649201 + 1.5 NA intron (NM_005077, intron 6 of 19) intron (NM_005077, intron 6 of 19) 40534 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 335.5-4 chr2 161548760 161549060 + 1.5 NA Intergenic L1M5|LINE|L1 -41008 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 344 chr12 47884620 47885000 + 1.5 NA intron (NM_001364085, intron 1 of 9) intron (NM_001364085, intron 1 of 9) 20184 NM_000376 7421 Hs.524368 NM_000376 ENSG00000111424 VDR NR1I1|PPP1R163 vitamin D receptor protein-coding 265.5-6 chr14 48635464 48635692 + 1.5 NA Intergenic Intergenic -840564 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 330.25-6 chr7 80836745 80837372 + 1.5 NA intron (NM_006379, intron 2 of 17) MER75|DNA|PiggyBac 81993 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 331.75-2 chr2 30841322 30841586 + 1.5 NA Intergenic L2c|LINE|L2 -34008 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 334-6 chr8 106503107 106503480 + 1.5 NA intron (NM_001198532, intron 1 of 15) intron (NM_001198532, intron 1 of 15) 55369 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 336.75 chr2 119867260 119867671 + 1.5 NA intron (NM_002830, intron 3 of 26) intron (NM_002830, intron 3 of 26) 107543 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 248.75-8 chr2 78945246 78945468 + 1.5 NA Intergenic AluJr|SINE|Alu -80345 NM_001008387 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 274.75-5 chr12 122485858 122486164 + 1.5 NA intron (NM_001350936, intron 4 of 12) L2a|LINE|L2 14921 NM_001350937 55596 Hs.37706 NM_017612 ENSG00000033030 ZCCHC8 - zinc finger CCHC-type containing 8 protein-coding 362-3 chr2 228179019 228179507 + 1.5 NA intron (NM_030623, intron 1 of 10) intron (NM_030623, intron 1 of 10) 2382 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 328.5-7 chr5 117470441 117470788 + 1.5 NA intron (NR_046089, intron 2 of 5) intron (NR_046089, intron 2 of 5) 55102 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 205.75-52 chr7 6501501 6501694 + 1.5 NA intron (NM_001145118, intron 20 of 21) (TCAA)n|Simple_repeat|Simple_repeat -17445 NM_001100603 11014 Hs.654552 NM_006854 ENSG00000136240 KDELR2 ELP-1|ERD2.2 KDEL endoplasmic reticulum protein retention receptor 2 protein-coding 466.5 chr15 76347737 76348477 + 1.5 NA TTS (NM_001145923) TTS (NM_001145923) 11334 NM_145805 64843 Hs.444677 NM_145805 ENSG00000159556 ISL2 - ISL LIM homeobox 2 protein-coding 235.5-13 chr18 71644521 71644738 + 1.5 NA Intergenic Intergenic -65673 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 198.75-19 chr14 46084126 46084323 + 1.5 NA intron (NR_102702, intron 1 of 3) L1ME2|LINE|L1 20065 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 320.75 chr10 53716200 53716706 + 1.5 NA Intergenic L2a|LINE|L2 -769777 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 254.25-6 chr17 52725700 52725955 + 1.5 NA Intergenic Intergenic -136294 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 318-2 chr2 138993856 138994141 + 1.5 NA Intergenic MIR|SINE|MIR 96674 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 403 chr4 32467363 32467854 + 1.5 NA Intergenic Intergenic 116570 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 316-6 chr3 94678433 94678720 + 1.5 NA Intergenic L1PA10|LINE|L1 -259687 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 302.5-4 chr14 45517555 45517771 + 1.5 NA Intergenic AluY|SINE|Alu 197939 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 255.5-3 chr1 184725833 184726178 + 1.5 NA intron (NM_025191, intron 7 of 19) intron (NM_025191, intron 7 of 19) 28853 NM_025191 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 406 chr11 87647215 87647773 + 1.5 NA Intergenic L1MA4|LINE|L1 71917 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 286-3 chr2 67971032 67971332 + 1.5 NA Intergenic L1ME3G|LINE|L1 91822 NM_001190265 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 400.75-4 chr5 134720028 134720547 + 1.5 NA intron (NM_021982, intron 20 of 22) Tigger3b|DNA|TcMar-Tigger -18261 NM_001745 819 Hs.529846 NM_001745 ENSG00000164615 CAMLG CAML|GET2 calcium modulating ligand protein-coding 288.5-13 chr4 66338676 66339050 + 1.5 NA Intergenic Intergenic 62039 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 248.5-18 chr4 105295477 105295643 + 1.5 NA intron (NR_126420, intron 2 of 5) AluSx|SINE|Alu 57321 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 391.5 chr11 40494639 40495071 + 1.5 NA intron (NM_020929, intron 2 of 4) MIRb|SINE|MIR -201725 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 191.5-48 chr5 108098945 108099097 + 1.5 NA intron (NM_001163315, intron 6 of 8) intron (NM_001163315, intron 6 of 8) 283077 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 269.5-19 chr6 155850966 155851149 + 1.5 NA Intergenic Intergenic -95740 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 502.75 chr4 30389535 30390039 + 1.5 NA Intergenic Intergenic -330582 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 392 chr15 69203476 69203897 + 1.5 NA intron (NM_001324094, intron 2 of 5) intron (NM_001324094, intron 2 of 5) 43051 NM_001324092 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 495.5 chr6 147131061 147131414 + 1.5 NA intron (NR_034115, intron 3 of 10) intron (NR_034115, intron 3 of 10) -27688 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 308-6 chr3 121534507 121534765 + 1.5 NA intron (NM_199420, intron 5 of 29) L1M5|LINE|L1 11352 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 258.5-3 chr11 82692264 82692590 + 1.5 NA Intergenic Intergenic 41437 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 268.5-4 chr10 19834492 19834777 + 1.5 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 18202 NM_032812 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 208.5-45 chr4 16160521 16160719 + 1.5 NA 3' UTR (NM_153365, exon 14 of 14) 3' UTR (NM_153365, exon 14 of 14) 65851 NM_153365 202018 Hs.479223 NM_153365 ENSG00000169762 TAPT1 CMVFR|OCLSBG transmembrane anterior posterior transformation 1 protein-coding 198-41 chr7 24380810 24381068 + 1.5 NA Intergenic MER33|DNA|hAT-Charlie 96749 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 176.5-23 chr15 80717988 80718334 + 1.5 NA intron (NM_021214, intron 1 of 2) intron (NM_021214, intron 1 of 2) 22851 NM_021214 58489 Hs.459072 NM_021214 ENSG00000136379 ABHD17C FAM108C1 abhydrolase domain containing 17C protein-coding 237 chr14 66351358 66351555 + 1.5 NA Intergenic L1MB1|LINE|L1 -134915 NR_110307 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 295.5-4 chr20 10062494 10062864 + 1.5 NA intron (NR_040710, intron 3 of 4) intron (NR_040710, intron 3 of 4) 27692 NM_022096 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 179-12 chr13 56987433 56987641 + 1.5 NA Intergenic Intergenic -153381 NM_001130407 729250 Hs.525056 NM_001130407 ENSG00000234278 PRR20E PRR20|PRR20A|PRR20B|PRR20C|PRR20D proline rich 20E protein-coding 237.25-14 chr3 166183418 166183624 + 1.5 NA Intergenic Intergenic -346098 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 320-4 chr17 61646305 61646666 + 1.5 NA Intergenic Intergenic -55266 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 200-46 chr9 18638944 18639181 + 1.5 NA intron (NM_052866, intron 6 of 12) intron (NM_052866, intron 6 of 12) 65756 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 233.25-6 chr10 108107612 108107901 + 1.5 NA Intergenic Intergenic -38463 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 785.75 chr4 65207958 65208889 + 1.5 NA Intergenic L1ME4a|LINE|L1 -203923 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 212.5-38 chr4 66407532 66407696 + 1.5 NA Intergenic Intergenic 130790 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 348.5-7 chr8 8276975 8277392 + 1.5 NA Intergenic L1MEd|LINE|L1 48613 NR_024363 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 417.75 chr2 192838475 192839106 + 1.5 NA Intergenic Intergenic 88945 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 184.5-6 chr1 90254114 90254357 + 1.5 NA Intergenic L1M6|LINE|L1 259125 NM_001320185 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 269-2 chr1 64403580 64403764 + 1.5 NA Intergenic Intergenic -66457 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 454.75 chr6 79114596 79115099 + 1.5 NA Intergenic Intergenic -36593 NM_017934 55023 Hs.511817 NM_017934 ENSG00000146247 PHIP BRWD2|DCAF14|DIDOD|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 262.75-16 chr3 98225922 98226261 + 1.5 NA Intergenic MER31-int|LTR|ERV1 -38153 NM_001005479 79295 Hs.554712 NM_001005479 ENSG00000230301 OR5H6 OR3-11 olfactory receptor family 5 subfamily H member 6 (gene/pseudogene) protein-coding 604 chr2 83345389 83346089 + 1.5 NA Intergenic L1MD2|LINE|L1 -177075 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 398.25 chr4 70288953 70289522 + 1.5 NA Intergenic Intergenic -45744 NM_033122 85438 Hs.120316 NM_033122 ENSG00000145309 CABS1 C4orf35|CLPH|NYD-SP26 calcium binding protein, spermatid associated 1 protein-coding 268.5-21 chr5 42393848 42394244 + 1.5 NA Intergenic THE1D|LTR|ERVL-MaLR -29393 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 224-33 chr9 86780060 86780328 + 1.5 NA Intergenic (TATATTA)n|Simple_repeat|Simple_repeat 167312 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 252.5-9 chr2 18719574 18719906 + 1.5 NA Intergenic Intergenic -130160 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 459.5 chr22 43757548 43758058 + 1.5 NA intron (NM_198856, intron 3 of 29) LTR16A|LTR|ERVL 54502 NM_022785 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 214.75-31 chr3 86142789 86143062 + 1.5 NA Intergenic Intergenic -314875 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 289-6 chr5 33013729 33014039 + 1.5 NA Intergenic L1M3c|LINE|L1 66441 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 202-6 chr12 44423610 44423879 + 1.5 NA Intergenic MLT2B4|LTR|ERVL 451917 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 370-2 chr4 46715673 46716107 + 1.5 NA Intergenic MLT2B4|LTR|ERVL 193355 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 435 chr11 112934504 112935294 + 1.5 NA Intergenic L1ME2|LINE|L1 -26521 NM_181351 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 407.25-2 chr2 231479354 231479701 + 1.5 NA Intergenic Intergenic -15043 NM_005381 4691 Hs.79110 NM_005381 ENSG00000115053 NCL C23|Nsr1 nucleolin protein-coding 320-6 chr5 72875580 72875842 + 1.5 NA exon (NM_153188, exon 8 of 25) exon (NM_153188, exon 8 of 25) -2880 NR_039968 100616152 NR_039968 ENSG00000263593 MIR4804 - microRNA 4804 ncRNA 372.5-2 chr3 44689969 44690465 + 1.5 NA Intergenic L1PB1|LINE|L1 -4564 NR_157564 112840933 NR_157564 ZKSCAN7-AS1 - ZKSCAN7 ZNF cluster antisense RNA 1 ncRNA 343-2 chr20 41287321 41287639 + 1.5 NA intron (NM_015035, intron 1 of 3) MLT1F2|LTR|ERVL-MaLR 12640 NM_015035 23051 Hs.380133 NM_015035 ENSG00000174306 ZHX3 TIX1 zinc fingers and homeoboxes 3 protein-coding 430.5 chr18 79476067 79476592 + 1.5 NA intron (NM_001278672, intron 8 of 8) CpG 76030 NM_172387 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T cells 1 protein-coding 250-13 chr5 39658666 39658912 + 1.5 NA Intergenic L1MB2|LINE|L1 138358 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 381.25-3 chr7 78383200 78383488 + 1.5 NA intron (NM_001301128, intron 6 of 20) L1MA4A|LINE|L1 36102 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 313.5-9 chr8 113235019 113235397 + 1.5 NA intron (NM_001363185, intron 3 of 66) intron (NM_001363185, intron 3 of 66) 141944 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 266-8 chr2 211843073 211843408 + 1.5 NA intron (NM_001042599, intron 3 of 26) intron (NM_001042599, intron 3 of 26) 583120 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 215-11 chr2 123319706 123319963 + 1.5 NA Intergenic Intergenic -246353 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 413.5 chr4 33370413 33371019 + 1.5 NA Intergenic MIR|SINE|MIR 669177 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 229.5-34 chr6 70423197 70423381 + 1.5 NA intron (NM_001351607, intron 3 of 22) L2a|LINE|L2 -9331 NR_147708 105377849 Hs.669000 NR_147708 ENSG00000224349 LOC105377849 - uncharacterized LOC105377849 ncRNA 625.5 chr9 111929139 111929669 + 1.5 NA intron (NM_003358, intron 5 of 8) intron (NM_003358, intron 5 of 8) -2696 NR_039814 100616114 NR_039814 ENSG00000266315 MIR4668 mir-4668 microRNA 4668 ncRNA 256.25-11 chr2 99915043 99915366 + 1.5 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 190379 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 247.5-10 chr11 18296373 18296675 + 1.5 NA intron (NM_181507, intron 12 of 22) intron (NM_181507, intron 12 of 22) 25616 NM_007216 11234 Hs.437599 NM_007216 ENSG00000110756 HPS5 AIBP63|BLOC2S2 HPS5 biogenesis of lysosomal organelles complex 2 subunit 2 protein-coding 354.75-2 chr11 91146586 91147060 + 1.5 NA Intergenic Intergenic -277621 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 206.5-22 chr2 179681956 179682149 + 1.5 NA intron (NR_148056, intron 3 of 9) intron (NR_148056, intron 3 of 9) -21858 NM_001352812 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 343.75-6 chr2 228732892 228733459 + 1.5 NA Intergenic L1MEg|LINE|L1 -121780 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 332-3 chr4 73851169 73851464 + 1.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -1980 NM_002620 5197 Hs.72933 NM_002620 ENSG00000109272 PF4V1 CXCL4L1|CXCL4V1|PF4-ALT|PF4A|SCYB4V1 platelet factor 4 variant 1 protein-coding 443.25 chr4 34260664 34261112 + 1.5 NA intron (NR_147184, intron 1 of 3) intron (NR_147184, intron 1 of 3) 8859 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 458 chr12 91390561 91391143 + 1.5 NA Intergenic L1MA3|LINE|L1 -208035 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 258.5-21 chr6 56944669 56945036 + 1.5 NA intron (NM_001144769, intron 2 of 96) MLT1L|LTR|ERVL-MaLR 9978 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 288.75-8 chr3 154063636 154063958 + 1.5 NA intron (NR_037901, intron 2 of 3) MIRc|SINE|MIR -57206 NM_001251962 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 269-11 chr5 146468552 146468907 + 1.5 NA intron (NM_006706, intron 6 of 21) intron (NM_006706, intron 6 of 21) 21396 NM_006706 10915 Hs.443465 NM_006706 ENSG00000113649 TCERG1 CA150|TAF2S|Urn1 transcription elongation regulator 1 protein-coding 321.75-5 chr8 114273424 114273851 + 1.5 NA Intergenic Intergenic -836698 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 306.5 chr1 197157062 197157478 + 1.5 NA non-coding (NR_135153, exon 11 of 11) non-coding (NR_135153, exon 11 of 11) -10576 NM_001206846 259266 Hs.121028 NM_018136 ENSG00000066279 ASPM ASP|Calmbp1|MCPH5 abnormal spindle microtubule assembly protein-coding 345-2 chr4 64914226 64914629 + 1.5 NA non-coding (NR_033976, exon 7 of 7) non-coding (NR_033976, exon 7 of 7) 90073 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 210.5-16 chr17 55220014 55220282 + 1.5 NA Intergenic Intergenic -44812 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 316-5 chr2 96692587 96692935 + 1.5 NA intron (NM_001293083, intron 31 of 52) intron (NM_001293083, intron 31 of 52) 47315 NM_030805 81562 Hs.655743 NM_030805 ENSG00000114988 LMAN2L MRT52|VIPL lectin, mannose binding 2 like protein-coding 385.25 chr2 107691667 107692238 + 1.5 NA Intergenic Intergenic -62160 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 419.5-2 chr17 58916249 58916754 + 1.5 NA intron (NM_014906, intron 1 of 6) AluJb|SINE|Alu 160632 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 281.75-7 chr2 105048558 105049156 + 1.5 NA intron (NM_182640, intron 1 of 10) intron (NM_182640, intron 1 of 10) -10361 NR_110603 102724691 Hs.606390 NR_110603 ENSG00000224509 LOC102724691 - uncharacterized LOC102724691 ncRNA 393 chr6 36018192 36018664 + 1.5 NA intron (NM_001193476, intron 2 of 19) L1MB4|LINE|L1 6072 NM_138718 116369 Hs.435836 NM_052961 ENSG00000112053 SLC26A8 SPGF3|TAT1 solute carrier family 26 member 8 protein-coding 228.75-16 chr3 81303417 81303666 + 1.5 NA Intergenic Intergenic 309673 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 363.75-3 chr13 102060446 102060731 + 1.5 NA intron (NM_175929, intron 1 of 4) intron (NM_175929, intron 1 of 4) -14584 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 202.75-17 chr13 37975647 37975878 + 1.5 NA Intergenic Intergenic -105337 NM_001354806 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 342.5-2 chr11 4967367 4967786 + 1.5 NA Intergenic MER92-int|LTR|ERV1 -11863 NM_001004748 401667 Hs.553805 NM_001004748 ENSG00000205496 OR51A2 - olfactory receptor family 51 subfamily A member 2 protein-coding 249-11 chr5 27126747 27127255 + 1.5 NA Intergenic Intergenic -88415 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 275.25-6 chr5 10235126 10235353 + 1.5 NA exon (NM_001258389, exon 4 of 5) exon (NM_001258389, exon 4 of 5) 14649 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 466.5-2 chr2 123637270 123637676 + 1.5 NA Intergenic L1ME4b|LINE|L1 387701 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 275.25-3 chr15 94418879 94419192 + 1.5 NA intron (NM_001159643, intron 16 of 19) intron (NM_001159643, intron 16 of 19) 63105 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 328.25-2 chr10 52641280 52641628 + 1.5 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 113950 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 368.5-3 chr4 109299267 109299670 + 1.5 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 3190 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 306.5-9 chr6 67909269 67909742 + 1.5 NA Intergenic L1MC3|LINE|L1 -145846 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 297-6 chr22 47725517 47725884 + 1.5 NA intron (NR_122046, intron 7 of 8) L1MEc|LINE|L1 94026 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 241-16 chr2 177352675 177352871 + 1.5 NA intron (NR_026966, intron 1 of 8) intron (NR_026966, intron 1 of 8) -38891 NR_106767 102465255 NR_106767 ENSG00000278418 MIR6512 hsa-mir-6512|mir-6512 microRNA 6512 ncRNA 404.25 chr12 62320309 62320660 + 1.5 NA intron (NR_147080, intron 4 of 19) MSTA|LTR|ERVL-MaLR 60080 NM_001351165 9958 Hs.434951 NM_006313 ENSG00000135655 USP15 UNPH-2|UNPH4 ubiquitin specific peptidase 15 protein-coding 564.75-2 chr3 17644228 17645006 + 1.5 NA intron (NM_001349090, intron 1 of 21) intron (NM_001349090, intron 1 of 21) 55403 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 391-2 chr7 41582205 41582563 + 1.5 NA Intergenic Intergenic -111535 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 296.5-13 chr3 129276187 129276673 + 1.5 NA intron (NM_016128, intron 23 of 23) L1MC5|LINE|L1 -2402 NM_001370345 56941 Hs.458320 NM_020187 ENSG00000183624 HMCES C3orf37|DC12|SRAPD1 5-hydroxymethylcytosine binding, ES cell specific protein-coding 188-4 chr1 50853959 50854131 + 1.5 NA intron (NM_007051, intron 2 of 18) MIR3|SINE|MIR 106222 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 385.5-2 chrX 82172259 82172585 + 1.5 NA Intergenic Intergenic 970320 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 388.25-2 chr11 50436345 50436886 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 27468 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 359.75 chr11 106366628 106367026 + 1.5 NA Intergenic Intergenic 115420 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 440.5 chr6 74828023 74828447 + 1.5 NA Intergenic Intergenic 300547 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 254.5-8 chr14 79824526 79825087 + 1.5 NA intron (NM_138970, intron 5 of 5) intron (NM_138970, intron 5 of 5) -386613 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 319.5-12 chr8 75732988 75733321 + 1.5 NA Intergenic Intergenic 193186 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 373.5-4 chr20 56667216 56667516 + 1.5 NA Intergenic Intergenic 38060 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 503.5 chr7 82692475 82692993 + 1.5 NA Intergenic Intergenic -248778 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 364.75 chr1 97775992 97776313 + 1.5 NA intron (NM_000110, intron 3 of 22) L1M6|LINE|L1 -20769 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 203 chr1 185904125 185904332 + 1.5 NA intron (NM_031935, intron 4 of 106) intron (NM_031935, intron 4 of 106) 169837 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 255-7 chr2 119803893 119804190 + 1.5 NA intron (NM_002830, intron 1 of 26) L1MD|LINE|L1 44119 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 228-26 chr6 130041828 130041998 + 1.5 NA intron (NM_001007102, intron 2 of 21) L1MC5|LINE|L1 22269 NM_001346550 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 377 chr17 59670198 59670668 + 1.5 NA intron (NM_001288653, intron 14 of 31) L1PA13|LINE|L1 37165 NM_001015509 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 535.25 chr8 107472576 107473316 + 1.5 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) 24972 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 494.75 chr11 100160967 100161532 + 1.5 NA intron (NM_001243270, intron 12 of 23) intron (NM_001243270, intron 12 of 23) -526039 NM_152432 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 325-2 chr7 137155404 137155634 + 1.5 NA intron (NR_046103, intron 1 of 3) MER94|DNA|hAT-Blackjack 8822 NR_046103 349160 Hs.660713 NR_046103 ENSG00000234352 LOC349160 - uncharacterized LOC349160 ncRNA 321 chr1 14085126 14085348 + 1.5 NA Intergenic Intergenic 334736 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 195.5-26 chr19 45126750 45126973 + 1.5 NA intron (NM_019121, intron 1 of 12) intron (NM_019121, intron 1 of 12) 33289 NM_198478 284353 Hs.299256 NM_198478 NKPD1 - NTPase KAP family P-loop domain containing 1 protein-coding 362-5 chr5 45826238 45826890 + 1.5 NA Intergenic Intergenic -130184 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 280-2 chr14 50175324 50175557 + 1.5 NA intron (NM_006939, intron 7 of 22) (T)n|Simple_repeat|Simple_repeat 56138 NM_006939 6655 Hs.291533 NM_006939 ENSG00000100485 SOS2 NS9|SOS-2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 345.5-4 chr2 226123904 226124272 + 1.5 NA Intergenic Intergenic -18706 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 275.75-12 chr4 99978291 99978769 + 1.5 NA intron (NR_125923, intron 1 of 3) Zaphod|DNA|hAT-Tip100 28036 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 495 chr3 67610929 67611434 + 1.5 NA intron (NM_001177599, intron 1 of 10) intron (NM_001177599, intron 1 of 10) 43433 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 189-4 chr1 247665855 247666277 + 1.5 NA Intergenic Intergenic 6975 NM_001005487 441933 Hs.553834 NM_001005487 ENSG00000197437 OR13G1 OR1-37 olfactory receptor family 13 subfamily G member 1 protein-coding 248-5 chr15 83686651 83686847 + 1.5 NA intron (NM_207517, intron 2 of 29) intron (NM_207517, intron 2 of 29) 32626 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 393.75 chr12 60843460 60844103 + 1.5 NA Intergenic Intergenic 1154411 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 329.25-2 chr11 99362677 99363102 + 1.5 NA intron (NM_001243271, intron 2 of 20) L1MB4|LINE|L1 -193256 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 250-5 chr11 106089057 106089335 + 1.5 NA intron (NM_015423, intron 2 of 5) intron (NM_015423, intron 2 of 5) -11458 NM_152433 143879 Hs.101949 NM_152433 ENSG00000182359 KBTBD3 BKLHD3 kelch repeat and BTB domain containing 3 protein-coding 403.25-3 chr8 132243717 132244168 + 1.5 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -138677 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 382.5 chr1 115886962 115887406 + 1.5 NA Intergenic L1ME1|LINE|L1 -32192 NR_125969 101928995 Hs.559119 NR_125969 ENSG00000228127 LINC01649 - long intergenic non-protein coding RNA 1649 ncRNA 276.5-4 chr12 22012143 22012412 + 1.5 NA Intergenic (ATGT)n|Simple_repeat|Simple_repeat -33897 NR_135117 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 319.5-8 chr3 193770750 193771124 + 1.5 NA Intergenic Intergenic 73072 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 385 chr20 6558909 6559226 + 1.5 NA Intergenic MER33|DNA|hAT-Charlie 132335 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 290.25-3 chr10 4330782 4331033 + 1.5 NA Intergenic Intergenic -53339 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 457.5 chr16 54039405 54040032 + 1.5 NA non-coding (NR_103838, exon 2 of 2) non-coding (NR_103838, exon 2 of 2) 325 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 230-33 chr9 72926271 72926484 + 1.5 NA intron (NM_000689, intron 5 of 12) intron (NM_000689, intron 5 of 12) 26676 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 306.75-7 chr18 13930424 13930796 + 1.5 NA Intergenic Intergenic -14903 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 250.75-17 chr2 148471167 148471487 + 1.5 NA intron (NM_018328, intron 9 of 14) intron (NM_018328, intron 9 of 14) -173424 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 269.5-4 chr10 55008692 55008977 + 1.5 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -207543 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 362-4 chr4 84670945 84671381 + 1.5 NA 3' UTR (NM_014991, exon 68 of 68) 3' UTR (NM_014991, exon 68 of 68) 88036 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 228.5-24 chr17 83162987 83163312 + 1.5 NA Intergenic Intergenic -63748 NR_029406 388574 Hs.546918 NR_029406 ENSG00000232938 RPL23AP87 - ribosomal protein L23a pseudogene 87 pseudo 259.5-19 chrX 118162157 118162409 + 1.5 NA Intergenic Intergenic -44943 NM_001168301 90293 Hs.348262 NM_033495 ENSG00000003096 KLHL13 BKLHD2 kelch like family member 13 protein-coding 202-29 chr21 30567103 30567365 + 1.5 NA Intergenic Intergenic -5921 NM_181614 337974 Hs.553696 NM_181614 ENSG00000244362 KRTAP19-7 KAP19.7 keratin associated protein 19-7 protein-coding 266.75-15 chr4 74199583 74199877 + 1.5 NA intron (NM_001351314, intron 5 of 9) intron (NM_001351314, intron 5 of 9) 41612 NM_001351314 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 359.25-5 chr2 223961601 223962210 + 1.5 NA intron (NM_022915, intron 2 of 3) intron (NM_022915, intron 2 of 3) 4442 NM_022915 65080 Hs.203559 NM_022915 ENSG00000135900 MRPL44 COXPD16|L44MT|MRP-L44 mitochondrial ribosomal protein L44 protein-coding 279.25-8 chr18 21330914 21331153 + 1.5 NA intron (NM_001142966, intron 1 of 32) intron (NM_001142966, intron 1 of 32) 88791 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 274.5-20 chr8 114409305 114409532 + 1.5 NA Intergenic Intergenic -972479 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 230.5-35 chr8 24778493 24778935 + 1.5 NA Intergenic L2a|LINE|L2 -135047 NM_005382 4741 Hs.458657 NM_005382 ENSG00000104722 NEFM NEF3|NF-M|NFM neurofilament medium protein-coding 532.75 chr11 6865163 6865533 + 1.5 NA Intergenic L1ME4a|LINE|L1 -4407 NM_001004460 341276 Hs.371762 NM_001004460 ENSG00000170790 OR10A2 OR10A2P|OR11-82|OR11-86|OST363 olfactory receptor family 10 subfamily A member 2 protein-coding 247-12 chr17 30389418 30389618 + 1.5 NA intron (NM_001304, intron 2 of 20) intron (NM_001304, intron 2 of 20) 9040 NM_001199775 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 227-12 chr3 30405412 30405645 + 1.5 NA Intergenic Intergenic -113340 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 251.25-12 chr18 67613531 67613755 + 1.5 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) -96923 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4|DE-epi2 dermatan sulfate epimerase like protein-coding 305.25-10 chr8 77616320 77616859 + 1.5 NA Intergenic Intergenic 165892 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 218.25-9 chr11 128657998 128658283 + 1.5 NA Intergenic L2b|LINE|L2 -28395 NM_001271012 2313 Hs.504281 NM_002017 ENSG00000151702 FLI1 BDPLT21|EWSR2|SIC-1 Fli-1 proto-oncogene, ETS transcription factor protein-coding 217.25-42 chr8 15546066 15546340 + 1.5 NA intron (NM_001356429, intron 1 of 10) L2|LINE|L2 5940 NM_001356429 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 324.75-5 chr3 94784908 94785367 + 1.5 NA Intergenic Intergenic -153126 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 300-4 chr2 51345959 51346276 + 1.5 NA intron (NR_135237, intron 3 of 10) intron (NR_135237, intron 3 of 10) 313516 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 315-3 chr4 84820590 84820999 + 1.5 NA intron (NM_014991, intron 11 of 67) intron (NM_014991, intron 11 of 67) -144822 NR_152774 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 399 chr2 192950741 192951259 + 1.5 NA Intergenic Charlie15a|DNA|hAT-Charlie 201155 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 446.75 chr5 82215357 82215829 + 1.5 NA intron (NM_031482, intron 5 of 7) intron (NM_031482, intron 5 of 7) 62761 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 223.25-29 chr5 158345380 158345733 + 1.5 NA intron (NR_109888, intron 4 of 6) L1MC4a|LINE|L1 64217 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 240.75-17 chr4 143240239 143240483 + 1.5 NA Intergenic MER6|DNA|TcMar-Tigger 55444 NM_001290326 84640 Hs.480848 NM_032557 ENSG00000170185 USP38 HP43.8KD ubiquitin specific peptidase 38 protein-coding 313.5-6 chr4 177428913 177429177 + 1.5 NA Intergenic Intergenic 13392 NM_000027 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 258.75-19 chr5 99381758 99381959 + 1.5 NA Intergenic LTR107_Mam|LTR|LTR -152132 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 285 chr14 46071239 46071518 + 1.5 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 7219 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 274.5-14 chr5 100487309 100487610 + 1.5 NA Intergenic L1MA9|LINE|L1 -47915 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 235-17 chr6 81786535 81786889 + 1.5 NA Intergenic Intergenic 27480 NR_126363 101928770 Hs.586239 NR_126363 ENSG00000224995 LINC01526 Lnc-FAM46A-1 long intergenic non-protein coding RNA 1526 ncRNA 282-5 chr14 49068144 49068441 + 1.5 NA Intergenic MIR|SINE|MIR 518088 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 388.25-3 chr7 140809267 140809638 + 1.5 NA intron (NR_148928, intron 3 of 17) intron (NR_148928, intron 3 of 17) -112375 NR_024454 100134713 Hs.534141 NR_024454 ENSG00000240889 NDUFB2-AS1 - NDUFB2 antisense RNA 1 ncRNA 385.75-2 chr6 170570950 170571320 + 1.5 NA intron (NM_003194, intron 6 of 7) intron (NM_003194, intron 6 of 7) 13502 NM_002598 5134 Hs.367900 NM_002598 ENSG00000071994 PDCD2 RP8|ZMYND7 programmed cell death 2 protein-coding 340-2 chr14 53445499 53445800 + 1.5 NA Intergenic Intergenic 292295 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 221-24 chr4 117012130 117012319 + 1.5 NA Intergenic Intergenic 73352 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 245-6 chr14 72036738 72037146 + 1.5 NA intron (NM_001370288, intron 2 of 16) L1ME1|LINE|L1 103415 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 222.5-32 chr3 75042580 75042831 + 1.5 NA Intergenic L1PA8A|LINE|L1 -171771 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 493.5 chr11 101614104 101614730 + 1.5 NA Intergenic Intergenic -30410 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 289.5-7 chr13 108015505 108016040 + 1.5 NA Intergenic Intergenic -148276 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155 member A protein-coding 167.25-21 chr12 102474348 102474459 + 1.5 NA intron (NM_000618, intron 2 of 3) intron (NM_000618, intron 2 of 3) 4147 NM_001111284 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 261.5 chr1 115504449 115504693 + 1.5 NA Intergenic Intergenic -137399 NM_138959 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 411.5-2 chr5 94548233 94548559 + 1.5 NA intron (NM_001145678, intron 2 of 20) L1M1|LINE|L1 70208 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 243.25-8 chr17 64412992 64413244 + 1.5 NA Intergenic MIR|SINE|MIR -22258 NM_000442 5175 Hs.376675 NM_000442 ENSG00000261371 PECAM1 CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM platelet and endothelial cell adhesion molecule 1 protein-coding 286 chr11 25675528 25675956 + 1.5 NA Intergenic L1MA4|LINE|L1 -513381 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 309 chr1 241798640 241799081 + 1.5 NA intron (NM_001367482, intron 27 of 27) intron (NM_001367482, intron 27 of 27) -49331 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 855.25 chr5 49666167 49667245 + 1.5 NA Intergenic (CATTC)n|Satellite|Satellite 774582 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 197.5-16 chr13 100939317 100939482 + 1.5 NA TTS (NR_047015) TTS (NR_047015) 4965 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 388.5-4 chr6 70168594 70169190 + 1.5 NA intron (NM_001858, intron 40 of 50) intron (NM_001858, intron 40 of 50) 114305 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 334-3 chr4 41996016 41996558 + 1.5 NA intron (NM_006345, intron 1 of 17) AluSp|SINE|Alu 5757 NM_006345 10463 Hs.479634 NM_006345 ENSG00000014824 SLC30A9 BILAPES|C4orf1|GAC63|HUEL|ZNT9 solute carrier family 30 member 9 protein-coding 315 chr2 103916132 103916460 + 1.5 NA Intergenic L1MC1|LINE|L1 492036 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 267-5 chr3 191847152 191847451 + 1.5 NA Intergenic L2c|LINE|L2 386138 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 239.5-26 chr4 67378419 67378605 + 1.5 NA Intergenic Intergenic 43488 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 259.5-3 chr11 24428968 24429180 + 1.5 NA Intergenic AluSx1|SINE|Alu -67979 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 278.25-19 chr8 78050815 78051071 + 1.5 NA Intergenic L1PB4|LINE|L1 -465397 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 368.5-5 chr9 79283657 79284179 + 1.5 NA Intergenic Intergenic -138252 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 282.75-14 chr8 117187374 117187641 + 1.5 NA Intergenic L1MEc|LINE|L1 52512 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 326-5 chr7 94465772 94466006 + 1.5 NA Intergenic L1MEh|LINE|L1 -43920 NM_022900 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 303-4 chr12 27361196 27361517 + 1.5 NA intron (NM_001248003, intron 1 of 14) intron (NM_001248003, intron 1 of 14) 28520 NM_001248004 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 287-5 chr2 214208119 214208391 + 1.5 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -202799 NR_159945 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 277.25-3 chr18 5554028 5554375 + 1.5 NA intron (NM_001281535, intron 3 of 21) L2a|LINE|L2 -9862 NM_001330557 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 339-2 chr2 223777461 223777856 + 1.5 NA intron (NR_110905, intron 2 of 5) intron (NR_110905, intron 2 of 5) 59924 NR_110906 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 subunit sigma 3 protein-coding 329 chr10 60685798 60686018 + 1.5 NA intron (NM_001204403, intron 1 of 43) intron (NM_001204403, intron 1 of 43) 47620 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 282.5-2 chr1 242822172 242822391 + 1.5 NA Intergenic Intergenic 279463 NR_029401 731275 Hs.722350 NR_029401 ENSG00000214837 LINC01347 - long intergenic non-protein coding RNA 1347 ncRNA 216.5-29 chr4 150597979 150598257 + 1.5 NA intron (NM_006726, intron 38 of 57) intron (NM_006726, intron 38 of 57) 15967 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14|MCSKS14 mab-21 like 2 protein-coding 190.5-37 chr3 86307975 86308200 + 1.5 NA Intergenic Intergenic -173856 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 276.5-17 chr9 81388471 81388797 + 1.5 NA Intergenic Intergenic 300901 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 586.75 chr20 31067966 31068831 + 1.5 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -189266 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 166.5-27 chr15 98298246 98298453 + 1.5 NA Intergenic L2a|LINE|L2 33209 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 260-9 chr5 81308710 81309029 + 1.5 NA intron (NM_001131035, intron 3 of 5) intron (NM_001131035, intron 3 of 5) 7282 NM_001131035 84240 Hs.15536 NM_032280 ENSG00000131732 ZCCHC9 PPP1R41 zinc finger CCHC-type containing 9 protein-coding 475 chr17 47373734 47374544 + 1.5 NA intron (NM_001195192, intron 9 of 21) intron (NM_001195192, intron 9 of 21) 50184 NM_001195192 124989 Hs.463303 NM_152347 ENSG00000178852 EFCAB13 C17orf57 EF-hand calcium binding domain 13 protein-coding 377.75-3 chr7 11881381 11881815 + 1.5 NA Intergenic L1M6|LINE|L1 -49400 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 323-6 chr4 75328892 75329281 + 1.5 NA Intergenic Intergenic -24990 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 282-8 chr3 126146966 126147319 + 1.5 NA intron (NR_072979, intron 8 of 20) intron (NR_072979, intron 8 of 20) -32923 NR_046383 100862662 Hs.633362 NR_046383 ENSG00000246022 ALDH1L1-AS2 - ALDH1L1 antisense RNA 2 ncRNA 184.5-40 chr19 28116600 28116899 + 1.5 NA Intergenic Intergenic -322809 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 225.5-28 chr22 49248594 49248867 + 1.5 NA Intergenic L1MEc|LINE|L1 294736 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 224-5 chr1 176028240 176028508 + 1.5 NA intron (NM_022457, intron 14 of 19) AluSz|SINE|Alu -59834 NR_002998 677679 NR_002998 ENSG00000252906 SCARNA3 HBI-100 small Cajal body-specific RNA 3 ncRNA 342-5 chr3 189618493 189618931 + 1.5 NA intron (NM_001329964, intron 1 of 13) ERV3-16A3_I-int|LTR|ERVL -12677 NM_001329148 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 281.25-4 chr13 85106439 85106745 + 1.5 NA intron (NR_126383, intron 1 of 5) intron (NR_126383, intron 1 of 5) 41465 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 392.25 chr1 221213552 221214044 + 1.5 NA Intergenic Intergenic 122498 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 397.75-2 chr3 121153399 121153868 + 1.5 NA intron (NR_145517, intron 8 of 8) intron (NR_145517, intron 8 of 8) 103993 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 458-2 chr7 16307001 16307614 + 1.5 NA intron (NM_001368197, intron 3 of 8) intron (NM_001368197, intron 3 of 8) 96821 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 242.5-39 chr8 14722003 14722432 + 1.5 NA intron (NM_139167, intron 1 of 7) L2a|LINE|L2 131293 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 281.25-3 chr13 59026296 59026586 + 1.5 NA Intergenic Intergenic -793324 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 304.5-9 chr7 33553326 33553582 + 1.5 NA intron (NM_001362679, intron 21 of 21) intron (NM_001362679, intron 21 of 21) -351461 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 452.25-2 chr18 77770218 77770788 + 1.5 NA Intergenic Intergenic 223224 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 271.5-10 chr22 25687165 25687405 + 1.5 NA intron (NM_001362778, intron 9 of 19) intron (NM_001362778, intron 9 of 19) -54903 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 234.75-21 chr5 25122130 25122462 + 1.5 NA Intergenic THE1D-int|LTR|ERVL-MaLR 68360 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 330 chr10 108004576 108005092 + 1.5 NA intron (NR_125760, intron 4 of 4) intron (NR_125760, intron 4 of 4) 64459 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 209.5-32 chr2 99548928 99549118 + 1.5 NA 3' UTR (NM_002285, exon 24 of 24) 3' UTR (NM_002285, exon 24 of 24) -59006 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 506 chr15 36787448 36788015 + 1.5 NA intron (NM_032499, intron 11 of 11) intron (NM_032499, intron 11 of 11) 30775 NR_027320 161635 Hs.659822 NR_027320 CSNK1A1P1 CSNK1A1P casein kinase 1 alpha 1 pseudogene 1 pseudo 343.5-2 chr11 107152495 107152951 + 1.5 NA Intergenic MER65-int|LTR|ERV1 -134247 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 210-24 chr2 69044575 69044948 + 1.5 NA exon (NM_053034, exon 3 of 15) exon (NM_053034, exon 3 of 15) 31617 NM_018153 84168 Hs.165859 NM_018153 ENSG00000169604 ANTXR1 ATR|GAPO|TEM8 ANTXR cell adhesion molecule 1 protein-coding 269.25-8 chr14 64949213 64949504 + 1.5 NA intron (NM_001330182, intron 6 of 7) intron (NM_001330182, intron 6 of 7) -6613 NR_138078 2877 Hs.2704 NM_002083 ENSG00000176153 GPX2 GI-GPx|GPRP|GPRP-2|GPx-2|GPx-GI|GSHPX-GI|GSHPx-2 glutathione peroxidase 2 protein-coding 257 chr1 56420124 56420329 + 1.5 NA Intergenic L1MC3|LINE|L1 5263 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 207.25-34 chr20 32249229 32249433 + 1.5 NA Intergenic L1ME1|LINE|L1 11536 NR_031726 100302183 NR_031726 ENSG00000284125 MIR1825 MIRN1825|hsa-mir-1825 microRNA 1825 ncRNA 354 chr16 82216464 82216774 + 1.5 NA Intergenic Intergenic -46395 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 470.75 chr16 48261073 48261610 + 1.5 NA intron (NM_031490, intron 4 of 14) intron (NM_031490, intron 4 of 14) -13802 NM_001370497 85320 Hs.652267 NM_032583 ENSG00000121270 ABCC11 EWWD|MRP8|WW ATP binding cassette subfamily C member 11 protein-coding 238.5-36 chr8 68521258 68521439 + 1.5 NA intron (NR_146187, intron 4 of 13) intron (NR_146187, intron 4 of 13) -189857 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 337.5-9 chr8 137638082 137638684 + 1.5 NA Intergenic Intergenic -224795 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 379-4 chr5 23816285 23816865 + 1.5 NA Intergenic Intergenic -134773 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 255-13 chr6 148974847 148975177 + 1.5 NA intron (NM_005715, intron 5 of 7) intron (NM_005715, intron 5 of 7) -10328 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 195.75-4 chr1 241694665 241694874 + 1.5 NA intron (NM_001367482, intron 8 of 27) intron (NM_001367482, intron 8 of 27) 42488 NM_001367482 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 185-3 chr1 64934881 64935080 + 1.5 NA intron (NM_001321852, intron 1 of 24) intron (NM_001321852, intron 1 of 24) 31569 NM_001321855 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 330.75-5 chr16 52396327 52396810 + 1.5 NA Intergenic L1MC|LINE|L1 138004 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 377.25-4 chr6 74087598 74087991 + 1.5 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 18343 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 241-4 chr1 106426987 106427178 + 1.5 NA Intergenic (TATATATACG)n|Simple_repeat|Simple_repeat -391157 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 449 chr4 52582013 52582456 + 1.5 NA Intergenic MIR|SINE|MIR 74305 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 336.5-4 chr22 27398411 27398803 + 1.5 NA Intergenic Intergenic 87956 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 284-7 chr5 170348811 170349148 + 1.5 NA Intergenic Intergenic -4508 NM_001034838 30820 Hs.484111 NM_014592 ENSG00000182132 KCNIP1 KCHIP1|VABP potassium voltage-gated channel interacting protein 1 protein-coding 211.75-36 chr6 147382048 147382254 + 1.5 NA intron (NM_139244, intron 24 of 25) intron (NM_139244, intron 24 of 25) -126539 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 326-7 chr8 89261785 89262108 + 1.5 NA Intergenic L1PB3|LINE|L1 495765 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 444.5-2 chr3 184960876 184961645 + 1.5 NA intron (NM_001009921, intron 36 of 46) intron (NM_001009921, intron 36 of 46) 148753 NR_146115 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 339.5-2 chr11 59540041 59540441 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR 25328 NM_001004711 390199 Hs.553757 NM_001004711 ENSG00000172742 OR4D9 OR11-253 olfactory receptor family 4 subfamily D member 9 protein-coding 250.25-24 chr8 77328558 77328941 + 1.5 NA Intergenic L1M2|LINE|L1 -121948 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 231.5-20 chr20 17320319 17320647 + 1.5 NA intron (NM_002594, intron 2 of 11) LTR16C|LTR|ERVL 93443 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 392.25-3 chr4 41543380 41543676 + 1.5 NA intron (NM_001330786, intron 1 of 22) intron (NM_001330786, intron 1 of 22) 5371 NM_001330672 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 279-5 chr13 77344349 77344639 + 1.5 NA Intergenic Intergenic -17400 NM_015057 23077 Hs.591221 NM_015057 ENSG00000005810 MYCBP2 Myc-bp2|PAM|PHR1|Phr MYC binding protein 2 protein-coding 305.75-2 chr1 174170609 174170982 + 1.5 NA intron (NM_001366445, intron 1 of 13) MIRc|SINE|MIR 11275 NM_001366448 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 303.5-16 chr7 49540951 49541283 + 1.5 NA Intergenic L1PA8|LINE|L1 -232521 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 499 chr2 146929596 146929941 + 1.5 NA Intergenic Intergenic 342711 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 248.25-16 chr5 106537979 106538166 + 1.5 NA Intergenic L1MA7|LINE|L1 472942 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 391.5-2 chr2 182883262 182883641 + 1.5 NA Intergenic MIR|SINE|MIR -16814 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 382-2 chr6 74947180 74947630 + 1.5 NA Intergenic Intergenic 181377 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 464.5 chr10 44075078 44075487 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR 162880 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 230-9 chr16 72683662 72684025 + 1.5 NA Intergenic Intergenic -18873 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 324.25-11 chr8 58499796 58500097 + 1.5 NA intron (NM_000780, intron 1 of 5) intron (NM_000780, intron 1 of 5) 217 NM_000780 1581 Hs.1644 NM_000780 ENSG00000167910 CYP7A1 CP7A|CYP7|CYPVII cytochrome P450 family 7 subfamily A member 1 protein-coding 291 chr11 22082941 22083345 + 1.5 NA Intergenic Intergenic -109942 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 270-5 chr15 81233716 81234034 + 1.5 NA intron (NM_001352686, intron 2 of 18) L1MEg|LINE|L1 34399 NM_001352686 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 262-7 chr4 59754930 59755357 + 1.5 NA Intergenic MIR|SINE|MIR 741570 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 391.5-4 chr22 17386830 17387294 + 1.5 NA intron (NM_001290047, intron 1 of 18) intron (NM_001290047, intron 1 of 18) 17602 NM_001290047 27443 Hs.231895 NM_031413 ENSG00000099954 CECR2 - CECR2 histone acetyl-lysine reader protein-coding 265-10 chr3 141532772 141533139 + 1.5 NA intron (NM_006506, intron 4 of 23) intron (NM_006506, intron 4 of 23) 45928 NM_001303246 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 208.5-55 chr7 9012789 9013037 + 1.5 NA Intergenic L1MB7|LINE|L1 579304 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 250.5-2 chr1 68940348 68940611 + 1.5 NA Intergenic HAL1|LINE|L1 -115419 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 299.5-10 chr7 10862553 10862815 + 1.5 NA Intergenic HAL1b|LINE|L1 77469 NM_002489 4697 Hs.50098 NM_002489 ENSG00000189043 NDUFA4 CI-9k|CI-MLRQ|COXFA4|MLRQ NDUFA4 mitochondrial complex associated protein-coding 289.5-9 chr18 5226778 5227070 + 1.5 NA Intergenic MER113A|DNA|hAT-Charlie 11105 NR_026849 147525 Hs.657197 NM_152471 LINC00526 C18orf18|HsT959 long intergenic non-protein coding RNA 526 ncRNA 270-12 chr4 28170888 28171159 + 1.5 NA Intergenic Intergenic -648559 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 257.75-8 chr14 74104394 74104703 + 1.5 NA intron (NM_001024674, intron 5 of 5) L1MC5|LINE|L1 19595 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 326.5-3 chr5 32951461 32952016 + 1.5 NA intron (NR_033832, intron 3 of 5) MER4E1|LTR|ERV1 4295 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 412.5-2 chr15 60422476 60422999 + 1.5 NA non-coding (NR_147171, exon 17 of 17) non-coding (NR_147171, exon 17 of 17) -24751 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 235.5-15 chr2 37092367 37092650 + 1.5 NA intron (NM_001322249, intron 5 of 7) intron (NM_001322249, intron 5 of 7) 8057 NM_174931 253635 Hs.595250 NM_174931 ENSG00000152133 GPATCH11 CCDC75|CENP-Y|CENPY G-patch domain containing 11 protein-coding 202.75-13 chr12 10194719 10194868 + 1.5 NA Intergenic L2|LINE|L2 15761 NM_153022 120939 Hs.226422 NM_153022 ENSG00000165685 TMEM52B C12orf59 transmembrane protein 52B protein-coding 330-2 chr11 10819679 10819958 + 1.5 NA intron (NR_120540, intron 2 of 2) AluSz|SINE|Alu 10521 NR_120540 101928053 Hs.637773 NR_120540 ENSG00000246308 LOC101928053 - uncharacterized LOC101928053 ncRNA 266-6 chr17 54430685 54430904 + 1.5 NA Intergenic Intergenic -469897 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 236.25-4 chr10 57814767 57815027 + 1.5 NA Intergenic LTR65|LTR|ERV1 452997 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 250.5-6 chr13 61132913 61133123 + 1.5 NA Intergenic Intergenic 66862 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 220.5-15 chr16 61034211 61034379 + 1.5 NA Intergenic Intergenic 21471 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 230.5-32 chr7 43212910 43213118 + 1.5 NA intron (NM_015052, intron 2 of 29) Charlie2a|DNA|hAT-Charlie 62119 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 183.25-39 chr2 212327156 212327434 + 1.5 NA intron (NM_001042599, intron 1 of 26) MIRb|SINE|MIR 99065 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 244.5-15 chr17 62056618 62056942 + 1.5 NA intron (NM_005121, intron 2 of 29) intron (NM_005121, intron 2 of 29) 8498 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 224.5-18 chr2 86389004 86389185 + 1.5 NA Intergenic L1MC1|LINE|L1 -51011 NM_001164730 65055 Hs.368884 NM_022912 ENSG00000068615 REEP1 C2orf23|HMN5B|SPG31|Yip2a receptor accessory protein 1 protein-coding 427.5 chr13 50063853 50064409 + 1.5 NA intron (NR_152566, intron 5 of 13) intron (NR_152566, intron 5 of 13) -14930 NR_029485 406948 NR_029485 ENSG00000283785 MIR15A MIRN15A|hsa-mir-15a|miRNA15A|mir-15a microRNA 15a ncRNA 188.5-47 chr4 39663155 39663314 + 1.5 NA Intergenic L1MEc|LINE|L1 -24369 NM_001317896 201895 Hs.205952 NM_174921 ENSG00000163683 SMIM14 C4orf34 small integral membrane protein 14 protein-coding 205.25-39 chr8 112996442 112996724 + 1.5 NA intron (NM_198123, intron 6 of 70) intron (NM_198123, intron 6 of 70) 353090 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 272.5-6 chr18 10438602 10438828 + 1.5 NA Intergenic Charlie7|DNA|hAT-Charlie -15920 NM_153000 147495 Hs.293274 NM_153000 ENSG00000154856 APCDD1 B7323|DRAPC1|FP7019|HHS|HTS|HYPT1 APC down-regulated 1 protein-coding 413.25-2 chr18 34987266 34987781 + 1.5 NA intron (NM_001143827, intron 1 of 7) intron (NM_001143827, intron 1 of 7) 9155 NM_001143827 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 386.75-5 chr8 36100888 36101378 + 1.5 NA Intergenic Intergenic -390813 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 412 chr2 141985598 141986103 + 1.5 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 145851 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 225.25-5 chr1 237277260 237277550 + 1.5 NA intron (NM_001035, intron 2 of 104) L1M5|LINE|L1 -193714 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 279-2 chr11 105153050 105153404 + 1.5 NA Intergenic LTR86A1|LTR|ERVL -13458 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 410.25 chr22 45685499 45685972 + 1.5 NA intron (NM_001167621, intron 1 of 10) intron (NM_001167621, intron 1 of 10) 13901 NM_013236 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 300.5-11 chr2 148525721 148526068 + 1.5 NA Intergenic MIR|SINE|MIR -118857 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 349.25-3 chr14 70807203 70807679 + 1.5 NA intron (NM_033141, intron 1 of 12) AluSx1|SINE|Alu 1730 NM_001284230 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 281-14 chrX 79003250 79003588 + 1.5 NA Intergenic L1PA17|LINE|L1 58028 NM_001324225 27334 Hs.296433 NM_014499 ENSG00000078589 P2RY10 LYPSR2|P2Y10 P2Y receptor family member 10 protein-coding 288.5-3 chr16 55437914 55438245 + 1.5 NA intron (NR_147198, intron 4 of 6) intron (NR_147198, intron 4 of 6) 24218 NR_147198 107984884 Hs.666473 NR_147198 MMP2-AS1 - MMP2 antisense RNA 1 ncRNA 597.75 chr5 120343100 120344079 + 1.5 NA Intergenic L1M5|LINE|L1 -120689 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 259.5-5 chr12 56069596 56069934 + 1.5 NA Intergenic LTR49-int|LTR|ERV1 -10260 NM_001982 2065 Hs.118681 NM_001982 ENSG00000065361 ERBB3 ErbB-3|FERLK|HER3|LCCS2|MDA-BF-1|c-erbB-3|c-erbB3|erbB3-S|p180-ErbB3|p45-sErbB3|p85-sErbB3 erb-b2 receptor tyrosine kinase 3 protein-coding 365.25-5 chr4 61158878 61159436 + 1.5 NA Intergenic Intergenic 15501 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 372 chr10 31233811 31234126 + 1.5 NA intron (NR_134478, intron 1 of 2) L1MA5|LINE|L1 46085 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 399.5 chr2 15395832 15396232 + 1.5 NA intron (NR_052013, intron 27 of 50) intron (NR_052013, intron 27 of 50) 165302 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 248.5-30 chr9 104845770 104846024 + 1.5 NA intron (NM_005502, intron 7 of 49) intron (NM_005502, intron 7 of 49) 81768 NM_018376 55335 Hs.429294 NM_018376 ENSG00000165028 NIPSNAP3B FP944|NIPSNAP3|SNAP1 nipsnap homolog 3B protein-coding 159.75-80 chr5 28067723 28067951 + 1.5 NA Intergenic L1PA13|LINE|L1 219828 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 186.5-12 chr11 41867984 41868140 + 1.5 NA Intergenic MIR|SINE|MIR 153494 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 256.5-3 chr17 52803543 52803779 + 1.5 NA Intergenic L1M1|LINE|L1 -58460 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 455.25 chr8 127483129 127483649 + 1.5 NA Intergenic Intergenic -1250 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 317.25-5 chr21 19416602 19416959 + 1.5 NA Intergenic Intergenic 482975 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 334.5-7 chr8 126716263 126716606 + 1.5 NA Intergenic Intergenic -157956 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 281.75-4 chr13 34343001 34343379 + 1.5 NA Intergenic Intergenic -4853 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 342.75-2 chr4 31582014 31582290 + 1.5 NA Intergenic Intergenic 75608 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 353.75-2 chr15 32992067 32992526 + 1.5 NA intron (NM_001277313, intron 7 of 20) intron (NM_001277313, intron 7 of 20) 75878 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 283-3 chr14 78858438 78858844 + 1.5 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -341341 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 171.5-107 chrX 71884930 71885078 + 1.5 NA Intergenic Intergenic -26084 NM_001013627 340527 Hs.397836 NM_001013627 ENSG00000204131 NHSL2 - NHS like 2 protein-coding 163.5-24 chr14 50962932 50963132 + 1.25 NA Intergenic Intergenic -18549 NM_001163940 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 262.75-18 chr5 39629850 39630166 + 1.25 NA Intergenic Intergenic 109577 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 379-3 chr2 30468230 30468829 + 1.25 NA intron (NM_182551, intron 2 of 6) L1MB5|LINE|L1 21283 NM_001304445 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 215-2 chr1 172033659 172034010 + 1.25 NA intron (NM_001278252, intron 6 of 14) intron (NM_001278252, intron 6 of 14) -104974 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 331.5-2 chr4 13367755 13368113 + 1.25 NA 3' UTR (NM_001159601, exon 8 of 8) 3' UTR (NM_001159601, exon 8 of 8) 116406 NM_001017979 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 198.25-57 chr8 125033967 125034333 + 1.25 NA intron (NM_014846, intron 26 of 28) L1M5|LINE|L1 35645 NM_003129 6713 Hs.71465 NM_003129 ENSG00000104549 SQLE - squalene epoxidase protein-coding 209.25-12 chr15 71497739 71498005 + 1.25 NA intron (NM_024817, intron 6 of 16) intron (NM_024817, intron 6 of 16) -49364 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 165.75-96 chr7 144785834 144786051 + 1.25 NA intron (NM_001350887, intron 1 of 6) intron (NM_001350887, intron 1 of 6) -47044 NR_146936 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 255.25-18 chr4 33128435 33128750 + 1.25 NA Intergenic MER20|DNA|hAT-Charlie 777554 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 227.25-24 chr3 81592029 81592421 + 1.25 NA intron (NM_000158, intron 8 of 15) L1MA9|LINE|L1 169420 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 195.25-10 chr12 121982058 121982519 + 1.25 NA intron (NM_144668, intron 19 of 21) AluJb|SINE|Alu -39596 NM_001024808 605 Hs.530970 NM_020993 ENSG00000110987 BCL7A BCL7 BAF chromatin remodeling complex subunit BCL7A protein-coding 184.75-38 chr19 8020693 8020866 + 1.25 NA Intergenic AluSp|SINE|Alu -15138 NM_001419 1994 Hs.184492 NM_001419 ENSG00000066044 ELAVL1 ELAV1|HUR|Hua|MelG ELAV like RNA binding protein 1 protein-coding 367.5-4 chr8 136302505 136302868 + 1.25 NA Intergenic MIRc|SINE|MIR -228112 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 234.75-23 chr6 510277 510549 + 1.25 NA intron (NM_018303, intron 23 of 27) intron (NM_018303, intron 23 of 27) 118661 NM_002460 3662 Hs.401013 NM_002460 ENSG00000137265 IRF4 LSIRF|MUM1|NF-EM5|SHEP8 interferon regulatory factor 4 protein-coding 251.5-19 chr3 148883489 148883724 + 1.25 NA intron (NM_001870, intron 8 of 10) intron (NM_001870, intron 8 of 10) 18310 NM_001870 1359 Hs.646 NM_001870 ENSG00000163751 CPA3 MC-CPA carboxypeptidase A3 protein-coding 163.25-55 chr4 119979663 119979913 + 1.25 NA Intergenic Intergenic 40248 NR_121639 100996694 Hs.119926 NR_121639 ENSG00000250392 LINC02502 - long intergenic non-protein coding RNA 2502 ncRNA 163.75-46 chr4 27484103 27484471 + 1.25 NA Intergenic L1MB1|LINE|L1 266808 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 319.5-2 chr11 117814598 117815061 + 1.25 NA intron (NM_001367905, intron 1 of 6) intron (NM_001367905, intron 1 of 6) 2685 NM_001367905 57453 Hs.659513 NM_020693 ENSG00000177103 DSCAML1 DSCAM2 DS cell adhesion molecule like 1 protein-coding 258.25-26 chr8 118441508 118441938 + 1.25 NA intron (NM_001101676, intron 2 of 4) MLT1G3|LTR|ERVL-MaLR -179278 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 294.5-6 chr4 34047787 34048380 + 1.25 NA Intergenic L1ME3C|LINE|L1 -8190 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 217.75-9 chr10 59076188 59076391 + 1.25 NA Intergenic Intergenic 76771 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 207.5-18 chr15 90415125 90415403 + 1.25 NA intron (NM_003870, intron 2 of 37) L1MC5|LINE|L1 27022 NM_003870 8826 Hs.430551 NM_003870 ENSG00000140575 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 326-9 chr8 135226348 135226836 + 1.25 NA Intergenic LTR103b_Mam|LTR|ERV1? -7539 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 301.75-10 chr5 64883337 64883683 + 1.25 NA intron (NM_005869, intron 10 of 13) intron (NM_005869, intron 10 of 13) 114580 NM_005869 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 203.25 chr1 51416881 51417158 + 1.25 NA intron (NM_001159969, intron 1 of 12) intron (NM_001159969, intron 1 of 12) 5076 NM_001159969 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 195.25-14 chr14 86444611 86444816 + 1.25 NA Intergenic Intergenic -461065 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 287.25-2 chr16 53269207 53269537 + 1.25 NA intron (NM_001352157, intron 21 of 37) L2a|LINE|L2 60921 NM_001352158 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 296.5-16 chr7 10658336 10658798 + 1.25 NA intron (NR_147499, intron 1 of 2) MIRb|SINE|MIR -44109 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 250.5-3 chr10 19598548 19598770 + 1.25 NA intron (NM_001142308, intron 34 of 39) L2b|LINE|L2 129891 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 215.5-48 chr7 36757875 36758102 + 1.25 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -33439 NM_001177506 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 241-23 chr3 188589471 188589758 + 1.25 NA intron (NM_001167672, intron 4 of 9) intron (NM_001167672, intron 4 of 9) -20948 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 303.5-2 chr10 29100454 29100848 + 1.25 NA Intergenic Intergenic -188419 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 404.25-3 chr4 104939102 104939908 + 1.25 NA Intergenic AluSc|SINE|Alu -206370 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 261-19 chr8 126765784 126766083 + 1.25 NA Intergenic Intergenic -207455 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 352-5 chr8 124345239 124345736 + 1.25 NA intron (NM_194291, intron 1 of 6) intron (NM_194291, intron 1 of 6) 27212 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 268-10 chr2 49332786 49333097 + 1.25 NA Intergenic L1M5|LINE|L1 -178414 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 238.25-30 chr6 162812909 162813296 + 1.25 NA intron (NM_001080379, intron 1 of 4) (TATTG)n|Simple_repeat|Simple_repeat 85132 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 186.5-43 chr3 172464898 172465054 + 1.25 NA Intergenic Intergenic -16520 NM_198407 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 242.25-6 chr14 60213656 60214008 + 1.25 NA Intergenic AluJr4|SINE|Alu -31918 NM_177952 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 259.5-13 chr5 25672172 25672576 + 1.25 NA Intergenic Intergenic 481421 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 253-3 chr14 46843901 46844191 + 1.25 NA intron (NM_001113498, intron 16 of 16) intron (NM_001113498, intron 16 of 16) -192265 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 146.75-64 chr21 27464380 27464540 + 1.25 NA Intergenic Intergenic -257919 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 281.5-8 chr12 33455774 33456027 + 1.25 NA Intergenic Intergenic -16081 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 260.75-24 chrX 79417966 79418440 + 1.25 NA Intergenic Intergenic -50651 NM_001171581 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 281.5-7 chr11 103513858 103514266 + 1.25 NA Intergenic L1MA4|LINE|L1 -335844 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 175.5-60 chr3 103906620 103906855 + 1.25 NA Intergenic Intergenic -382621 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 341.5-5 chr6 152986295 152986714 + 1.25 NA TTS (NM_019041) TTS (NM_019041) -2925 NM_001142522 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 219.25-16 chr16 78538685 78538983 + 1.25 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 439180 NM_016373 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 207.25-9 chr10 67148779 67148981 + 1.25 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) 136614 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 218-22 chr5 42067815 42068026 + 1.25 NA Intergenic L1MA3|LINE|L1 107425 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 298.75-2 chr11 114519013 114519433 + 1.25 NA 3' UTR (NM_001367953, exon 8 of 8) 3' UTR (NM_001367953, exon 8 of 8) 40658 NM_152315 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 295 chr17 55707816 55708223 + 1.25 NA Intergenic Intergenic 14845 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 490.5 chr7 19990257 19990780 + 1.25 NA intron (NR_110114, intron 3 of 5) intron (NR_110114, intron 3 of 5) 149908 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 188-33 chr2 155597415 155597626 + 1.25 NA Intergenic L1MB7|LINE|L1 657411 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 307-3 chr14 61028496 61028877 + 1.25 NA intron (NR_033344, intron 5 of 16) intron (NR_033344, intron 5 of 16) -46996 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 344.5-3 chr14 66854189 66854824 + 1.25 NA intron (NM_001024218, intron 4 of 21) Kanga2_a|DNA|TcMar-Tc2 -334934 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 328.25-5 chr2 69927733 69928118 + 1.25 NA intron (NM_001202513, intron 3 of 5) intron (NM_001202513, intron 3 of 5) 12816 NM_002357 4084 Hs.468908 NM_002357 ENSG00000059728 MXD1 BHLHC58|MAD|MAD1 MAX dimerization protein 1 protein-coding 276.25-7 chr2 119530141 119530383 + 1.25 NA Intergenic Intergenic -5810 NM_002980 6344 Hs.42091 NM_002980 ENSG00000080293 SCTR SR secretin receptor protein-coding 325.25-6 chr8 128397570 128398004 + 1.25 NA Intergenic Intergenic 166892 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 218.75-27 chr9 108077896 108078146 + 1.25 NA Intergenic Intergenic -588252 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 472.25 chr7 105855765 105856420 + 1.25 NA intron (NM_152749, intron 2 of 3) MER63C|DNA|hAT-Blackjack 20493 NM_020725 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 372.25 chr11 55482902 55483200 + 1.25 NA Intergenic L1MA9|LINE|L1 -71218 NM_001001920 81309 NM_001001920 ENSG00000181939 OR4C15 OR11-127|OR11-134 olfactory receptor family 4 subfamily C member 15 protein-coding 311.75-5 chr6 46586925 46587307 + 1.25 NA exon (NM_001278738, exon 10 of 12) exon (NM_001278738, exon 10 of 12) 65702 NM_016593 51302 Hs.387367 NM_016593 ENSG00000146233 CYP39A1 - cytochrome P450 family 39 subfamily A member 1 protein-coding 375.5-3 chr18 13651721 13652337 + 1.25 NA 3' UTR (NM_181481, exon 6 of 6) 3' UTR (NM_181481, exon 6 of 6) 10271 NM_001276251 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 437.75 chr1 108483509 108484233 + 1.25 NA Intergenic HAL1ME|LINE|L1 33589 NM_001143988 653149 Hs.712226 NM_001143987 ENSG00000186086 NBPF6 - NBPF member 6 protein-coding 248-9 chr7 9156949 9157217 + 1.25 NA Intergenic Intergenic -477187 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 278.25-6 chr14 58209798 58210199 + 1.25 NA intron (NM_018477, intron 4 of 12) intron (NM_018477, intron 4 of 12) 9849 NM_018477 55860 Hs.509451 NM_018477 ENSG00000131966 ACTR10 ACTR11|Arp10|Arp11|HARP11 actin related protein 10 protein-coding 221-15 chr2 8368877 8369232 + 1.25 NA Intergenic Arthur1|DNA|hAT-Tip100 -40635 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 194.75-41 chr6 77712134 77712512 + 1.25 NA intron (NM_001282136, intron 2 of 4) intron (NM_001282136, intron 2 of 4) 59284 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 162.75-87 chr8 119412065 119412356 + 1.25 NA Intergenic Tigger3b|DNA|TcMar-Tigger -4236 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 165-74 chr6 56231337 56231556 + 1.25 NA intron (NM_001318751, intron 1 of 30) MIR3|SINE|MIR 16134 NR_134850 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 221.5-27 chr2 52628159 52628515 + 1.25 NA Intergenic Intergenic 74278 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 277.25-5 chr2 82147975 82148289 + 1.25 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -681186 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 320.75-3 chr12 19800550 19800839 + 1.25 NA Intergenic Intergenic -213991 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 346.5-5 chr5 15041839 15042266 + 1.25 NA Intergenic Tigger3b|DNA|TcMar-Tigger -170274 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 170.5-23 chr14 88946018 88946177 + 1.25 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 121446 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 229.25-13 chr2 25348319 25348589 + 1.25 NA Intergenic Intergenic -5864 NM_175629 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 443.5-2 chr9 20789960 20790537 + 1.25 NA intron (NM_017794, intron 13 of 45) intron (NM_017794, intron 13 of 45) 3321 NR_145762 109616992 NR_145762 ENSG00000202189 SNORA30B - small nucleolar RNA, H/ACA box 30B snoRNA 342.25-2 chr2 175210332 175210626 + 1.25 NA Intergenic L1MCa|LINE|L1 -28769 NM_001689 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 189-5 chr10 4876284 4876440 + 1.25 NA intron (NR_026743, intron 9 of 10) MIR3|SINE|MIR 39911 NR_026743 389932 Hs.631812 NR_026743 AKR1C6P TAKR aldo-keto reductase family 1 member C6, pseudogene pseudo 151.5-14 chr10 111820783 111820968 + 1.25 NA Intergenic Intergenic 362890 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 357 chr4 120728538 120729059 + 1.25 NA intron (NM_001300824, intron 12 of 13) intron (NM_001300824, intron 12 of 13) 194068 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 279.25-10 chr2 79161339 79161768 + 1.25 NA Intergenic L1MA4|LINE|L1 -1800 NM_002580 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 403.25-2 chr8 86595772 86596178 + 1.25 NA intron (NM_019098, intron 15 of 17) intron (NM_019098, intron 15 of 17) 81540 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 358.75-4 chr7 72038061 72038607 + 1.25 NA intron (NM_001363460, intron 3 of 5) MADE1|DNA|TcMar-Mariner 299057 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 149-98 chr8 80706092 80706237 + 1.25 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 168304 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 373.5-5 chr3 20960140 20960696 + 1.25 NA Intergenic MER4A1|LTR|ERV1 -445308 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 254-3 chr16 11011265 11011545 + 1.25 NA intron (NM_015226, intron 10 of 22) L1MC4|LINE|L1 66841 NM_015226 23274 Hs.35490 NM_015226 ENSG00000038532 CLEC16A Gop-1|KIAA0350 C-type lectin domain containing 16A protein-coding 224.75-35 chr6 72421860 72422135 + 1.25 NA Intergenic LTR52|LTR|ERVL 55251 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 301.25-9 chr3 191442417 191442901 + 1.25 NA intron (NR_120606, intron 1 of 6) L2c|LINE|L2 17135 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 162.75-66 chr6 38248990 38249213 + 1.25 NA intron (NM_052893, intron 10 of 11) L1M6|LINE|L1 -232495 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 173-17 chr11 14180458 14180809 + 1.25 NA intron (NM_006108, intron 6 of 15) L2c|LINE|L2 177852 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 286.75-5 chr2 208409564 208409829 + 1.25 NA intron (NM_005048, intron 1 of 12) Charlie14a|DNA|hAT-Charlie 2866 NM_005048 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 210-27 chr2 109618422 109618665 + 1.25 NA 3' UTR (NM_023016, exon 1 of 1) 3' UTR (NM_023016, exon 1 of 1) 4179 NM_023016 65124 Hs.355455 NM_023016 ENSG00000198142 SOWAHC ANKRD57|C2orf26 sosondowah ankyrin repeat domain family member C protein-coding 314.5-10 chr5 12890052 12890427 + 1.25 NA intron (NR_147005, intron 4 of 4) intron (NR_147005, intron 4 of 4) 142647 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 271.5-12 chr3 155924547 155925070 + 1.25 NA intron (NM_003875, intron 11 of 15) intron (NM_003875, intron 11 of 15) 54158 NM_003875 8833 Hs.591314 NM_003875 ENSG00000163655 GMPS GATD7 guanine monophosphate synthase protein-coding 153.5-99 chr7 82859978 82860157 + 1.25 NA intron (NM_033026, intron 10 of 24) L1MA1|LINE|L1 302817 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 398 chr8 129782085 129782857 + 1.25 NA intron (NM_031415, intron 1 of 13) L1MA2|LINE|L1 4153 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 145.75-106 chr6 129234303 129234431 + 1.25 NA intron (NM_000426, intron 12 of 64) intron (NM_000426, intron 12 of 64) 351226 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 247.25-10 chr2 73393154 73393409 + 1.25 NA intron (NM_015120, intron 1 of 22) L1MB8|LINE|L1 7523 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 300.25-5 chr14 80239108 80239410 + 1.25 NA intron (NR_038355, intron 2 of 8) L1ME4a|LINE|L1 -8202 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 298-2 chr16 35548751 35549098 + 1.25 NA Intergenic Intergenic -41754 NR_034019 100130700 Hs.97712 NR_034018 TP53TG3HP - TP53 target 3 family member H, pseudogene pseudo 206-20 chr21 18337470 18337752 + 1.25 NA intron (NM_002772, intron 13 of 24) intron (NM_002772, intron 13 of 24) 66174 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 175-14 chr14 86271329 86271544 + 1.25 NA Intergenic L1ME2|LINE|L1 336758 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 187.25-46 chr4 123916404 123916647 + 1.25 NA intron (NR_027105, intron 4 of 5) intron (NR_027105, intron 4 of 5) 142261 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 205-40 chr5 7838894 7839366 + 1.25 NA intron (NM_001089584, intron 1 of 2) THE1B|LTR|ERVL-MaLR 12003 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 182.5-68 chr6 97941355 97941561 + 1.25 NA Intergenic L1ME3G|LINE|L1 -83073 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 424.25 chr8 86901907 86902693 + 1.25 NA intron (NM_173538, intron 2 of 10) intron (NM_173538, intron 2 of 10) 35885 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 186.25-16 chr16 51654997 51655157 + 1.25 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -107442 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 289.75-2 chr10 101677602 101678010 + 1.25 NA intron (NM_001323541, intron 1 of 8) L1ME2z|LINE|L1 17364 NR_136613 6468 Hs.500822 NM_022039 ENSG00000107829 FBXW4 DAC|FBW4|FBWD4|SHFM3|SHSF3 F-box and WD repeat domain containing 4 protein-coding 232.5-36 chr4 58452664 58452942 + 1.25 NA Intergenic MIRb|SINE|MIR 83525 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 185-28 chr18 3097923 3098202 + 1.25 NA intron (NM_019856, intron 24 of 36) intron (NM_019856, intron 24 of 36) -86115 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 192.25-20 chr14 43388673 43388933 + 1.25 NA Intergenic Intergenic 1118480 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 275-21 chr8 137579234 137579574 + 1.25 NA Intergenic L3|LINE|CR1 -165816 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 348.25-4 chr8 83453380 83453857 + 1.25 NA Intergenic MER44C|DNA|TcMar-Tigger 49860 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 163.5-8 chr1 158604188 158604433 + 1.25 NA Intergenic MIR|SINE|MIR -2129 NM_001004478 128368 Hs.553590 NM_001004478 ENSG00000198967 OR10Z1 OR1-15 olfactory receptor family 10 subfamily Z member 1 protein-coding 177.25-48 chr3 178331786 178331965 + 1.25 NA Intergenic Intergenic -87326 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 224.5-4 chr10 59779879 59780117 + 1.25 NA Intergenic Intergenic -26543 NM_001304732 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 250.5-22 chr4 59871546 59871765 + 1.25 NA Intergenic AluSq2|SINE|Alu 858082 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 194.25-35 chr4 172138859 172139199 + 1.25 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -325422 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 260.25-3 chr10 92294385 92294730 + 1.25 NA intron (NM_017824, intron 1 of 5) intron (NM_017824, intron 1 of 5) 3390 NM_017824 54708 Hs.573490 NM_017824 ENSG00000198060 MARCH5 MARCH-V|MITOL|RNF153 membrane associated ring-CH-type finger 5 protein-coding 267-11 chr6 120271618 120271914 + 1.25 NA Intergenic Intergenic 256587 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 218.5-15 chr16 67618320 67618603 + 1.25 NA intron (NM_006565, intron 5 of 11) L1M5|LINE|L1 -26683 NM_001013838 146206 Hs.611432 NM_001013838 ENSG00000159753 CARMIL2 CARMIL2b|IMD58|LRRC16C|RLTPR capping protein regulator and myosin 1 linker 2 protein-coding 263.75-22 chr9 8130721 8131223 + 1.25 NA Intergenic Ricksha_c|DNA|MULE-MuDR -331194 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 180-25 chr14 87757906 87758282 + 1.25 NA Intergenic L1MB8|LINE|L1 -102800 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 208.5-53 chr5 146967202 146967437 + 1.25 NA intron (NM_001271900, intron 2 of 10) intron (NM_001271900, intron 2 of 10) -47813 NR_047115 100874361 Hs.193825 NR_047115 ENSG00000249553 PPP2R2B-IT1 - PPP2R2B intronic transcript 1 ncRNA 153.25-60 chr2 54129666 54129890 + 1.25 NA intron (NM_001320588, intron 1 of 3) intron (NM_001320588, intron 1 of 3) 6495 NM_001320588 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 366.25 chr14 62188550 62188954 + 1.25 NA Intergenic Intergenic -48779 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 239.75-2 chr1 234940082 234940387 + 1.25 NA Intergenic L2a|LINE|L2 23765 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 486.75 chrUn_KI270337v1 182 940 + 1.25 NA NA SAR|Satellite|Satellite NA NA 176.5-74 chr6 138409994 138410254 + 1.25 NA intron (NM_014320, intron 3 of 3) intron (NM_014320, intron 3 of 3) 5901 NM_001326381 23593 Hs.486589 NM_014320 ENSG00000051620 HEBP2 C6ORF34B|C6orf34|PP23|SOUL heme binding protein 2 protein-coding 540.25 chr13 60212320 60212817 + 1.25 NA Intergenic L1ME3|LINE|L1 -48583 NM_001258369 81624 Hs.283127 NM_030932 ENSG00000139734 DIAPH3 AN|AUNA1|DIA2|DRF3|NSDAN|diap3|mDia2 diaphanous related formin 3 protein-coding 328.5-2 chr15 23944469 23944822 + 1.25 NA Intergenic Intergenic -30502 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 193.5-74 chr8 86478073 86478347 + 1.25 NA intron (NM_001286719, intron 6 of 8) intron (NM_001286719, intron 6 of 8) 30476 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 237-22 chr9 122482558 122482899 + 1.25 NA Intergenic L1MA6|LINE|L1 -4802 NM_001004451 347168 Hs.632692 NM_001004451 ENSG00000136834 OR1J1 OR9-18|hg32 olfactory receptor family 1 subfamily J member 1 protein-coding 314-9 chr6 168315096 168315411 + 1.25 NA intron (NM_001286351, intron 1 of 5) intron (NM_001286351, intron 1 of 5) 4524 NR_104425 168002 Hs.673059 NM_214462 ENSG00000164488 DACT2 C6orf116|DAPPER2|DPR2|bA503C24.7 dishevelled binding antagonist of beta catenin 2 protein-coding 231.75-4 chr10 19311263 19311567 + 1.25 NA intron (NM_001142308, intron 21 of 39) intron (NM_001142308, intron 21 of 39) 262614 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 188-3 chr1 47384750 47384953 + 1.25 NA intron (NR_126355, intron 4 of 4) intron (NR_126355, intron 4 of 4) -31434 NM_012186 2301 Hs.112968 NM_012186 ENSG00000186790 FOXE3 AAT11|ASGD2|CTRCT34|FKHL12|FREAC8 forkhead box E3 protein-coding 382.75-3 chr6 73139786 73140139 + 1.25 NA intron (NR_046621, intron 1 of 4) intron (NR_046621, intron 1 of 4) 3552 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 278.5-6 chr2 109409868 109410207 + 1.25 NA intron (NM_001099289, intron 4 of 9) intron (NM_001099289, intron 4 of 9) -96412 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 314.75-10 chrX 97551950 97552270 + 1.25 NA intron (NR_125391, intron 1 of 2) MIR3|SINE|MIR 12425 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 189.25-45 chr6 73632743 73632929 + 1.25 NA intron (NM_012434, intron 6 of 10) intron (NM_012434, intron 6 of 10) 21156 NM_012434 26503 Hs.597422 NM_012434 ENSG00000119899 SLC17A5 AST|ISSD|NSD|SD|SIALIN|SIASD|SLD solute carrier family 17 member 5 protein-coding 175-21 chr2 184373363 184373553 + 1.25 NA Intergenic L1MC3|LINE|L1 -5517 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 265.25-16 chr7 19618918 19619343 + 1.25 NA Intergenic Intergenic 86306 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 254.75-18 chr5 41800993 41801361 + 1.25 NA intron (NR_157114, intron 10 of 15) intron (NR_157114, intron 10 of 15) 42480 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 288.5 chr1 208593679 208594115 + 1.25 NA Intergenic MER5A1|DNA|hAT-Charlie -134791 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 320 chr1 189074624 189075152 + 1.25 NA Intergenic Intergenic 1401122 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 186-14 chr16 11381433 11381681 + 1.25 NA intron (NM_001370704, intron 66 of 66) MER58B|DNA|hAT-Charlie 36098 NM_152308 116028 Hs.347524 NM_152308 ENSG00000175643 RMI2 BLAP18|C16orf75 RecQ mediated genome instability 2 protein-coding 173-16 chr11 6288680 6288866 + 1.25 NA Intergenic L1MEg|LINE|L1 28935 NM_176875 887 Hs.203 NM_176875 ENSG00000110148 CCKBR CCK-B|CCK2R|GASR cholecystokinin B receptor protein-coding 407.5 chr15 63572046 63572776 + 1.25 NA intron (NM_001256702, intron 8 of 13) intron (NM_001256702, intron 8 of 13) -24976 NM_001367809 283807 Hs.631163 NM_203373 ENSG00000197361 FBXL22 Fbl22 F-box and leucine rich repeat protein 22 protein-coding 205-6 chr10 69064810 69065107 + 1.25 NA Intergenic Intergenic -22645 NM_001321053 5552 Hs.1908 NM_002727 ENSG00000122862 SRGN PPG|PRG|PRG1 serglycin protein-coding 263.25-24 chr6 50083781 50084085 + 1.25 NA Intergenic Intergenic -34004 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 163.75-31 chr2 63498353 63498578 + 1.25 NA intron (NR_148705, intron 1 of 16) intron (NR_148705, intron 1 of 16) -60458 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 244-16 chr2 236997107 236997402 + 1.25 NA Intergenic Intergenic 58913 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 314.75-2 chr15 23656858 23657428 + 1.25 NA Intergenic Intergenic -9276 NM_019066 54551 Hs.141496 NM_019066 ENSG00000254585 MAGEL2 NDNL1|PWLS|SHFYNG|nM15 MAGE family member L2 protein-coding 250-9 chr2 39434613 39435064 + 1.25 NA intron (NM_003618, intron 1 of 33) MIR|SINE|MIR 2447 NM_001270425 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 402.25 chr14 46549386 46550036 + 1.25 NA Intergenic L1MA8|LINE|L1 78352 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 353-2 chr14 68189990 68190440 + 1.25 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 366623 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 156.5-46 chr19 58295229 58295436 + 1.25 NA non-coding (NR_144447, exon 4 of 7) non-coding (NR_144447, exon 4 of 7) -10042 NR_144445 105372481 Hs.435404 NR_144445 ENSG00000142396 ERVK3-1 - endogenous retrovirus group K3 member 1 ncRNA 261-13 chr5 9568907 9569218 + 1.25 NA Intergenic L2|LINE|L2 20235 NR_003689 100113384 NR_003689 SNORD123 - small nucleolar RNA, C/D box 123 snoRNA 229.75-14 chr2 86646531 86646871 + 1.25 NA intron (NM_001198954, intron 2 of 7) intron (NM_001198954, intron 2 of 7) -22824 NM_001198951 7844 Hs.469199 NM_005667 ENSG00000239305 RNF103 HKF-1|KF-1|KF1|ZFP-103|ZFP103 ring finger protein 103 protein-coding 332.25-3 chr5 83478789 83479246 + 1.25 NA intron (NM_001164098, intron 1 of 13) intron (NM_001164098, intron 1 of 13) 7273 NM_001126336 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 170-29 chr2 1093390 1093616 + 1.25 NA intron (NM_018968, intron 2 of 16) intron (NM_018968, intron 2 of 16) -142111 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 176.25-25 chr13 90312281 90312535 + 1.25 NA Intergenic LTR50|LTR|ERVL 81226 NR_030754 693207 NR_030754 ENSG00000283783 MIR622 MIRN622|hsa-mir-622 microRNA 622 ncRNA 199.5-16 chr15 86359700 86359962 + 1.25 NA intron (NM_152336, intron 17 of 24) L1MA9|LINE|L1 -42863 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 393.5-3 chr6 140680157 140680676 + 1.25 NA Intergenic (TATTTTT)n|Simple_repeat|Simple_repeat -3398 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 277.5-4 chr11 15430368 15430753 + 1.25 NA Intergenic LTR16E2|LTR|ERVL -213325 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 414.5-4 chr7 112630109 112630893 + 1.25 NA intron (NR_110158, intron 1 of 7) MIR|SINE|MIR 8120 NR_110158 101928012 Hs.521131 NR_110158 ENSG00000223646 LOC101928012 - uncharacterized LOC101928012 ncRNA 264.25-9 chr15 20358847 20359190 + 1.25 NA Intergenic Intergenic 76274 NR_038836 646096 Hs.448789 NR_038836 ENSG00000259156 CHEK2P2 - checkpoint kinase 2 pseudogene 2 pseudo 182.75-49 chr4 115284823 115285090 + 1.25 NA Intergenic L2a|LINE|L2 -171336 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 186.5-70 chr8 74145178 74145451 + 1.25 NA Intergenic Intergenic 153922 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 186.5-69 chr7 118370584 118370812 + 1.25 NA Intergenic Intergenic 145994 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 176.75-86 chr7 93103659 93103836 + 1.25 NA exon (NM_001193307, exon 2 of 2) exon (NM_001193307, exon 2 of 2) 14232 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 262.5-16 chr5 64353198 64353636 + 1.25 NA intron (NM_001113561, intron 7 of 7) intron (NM_001113561, intron 7 of 7) -152598 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 214.25-35 chr7 38963839 38964107 + 1.25 NA Intergenic MLT1F2|LTR|ERVL-MaLR -13936 NM_001166018 11281 Hs.137106 NM_007252 ENSG00000106536 POU6F2 RPF-1|WT5|WTSL POU class 6 homeobox 2 protein-coding 239.25-26 chr8 118097682 118098099 + 1.25 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 13929 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 218-7 chr12 83289804 83290055 + 1.25 NA Intergenic Intergenic 602774 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 163.5-93 chr5 117598179 117598329 + 1.25 NA Intergenic Intergenic -132107 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 240.25-27 chr7 103719243 103719524 + 1.25 NA intron (NM_005045, intron 8 of 64) intron (NM_005045, intron 8 of 64) 270133 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 389.75-2 chr2 234837403 234838109 + 1.25 NA Intergenic MER2|DNA|TcMar-Tigger -114261 NM_014521 23677 Hs.516777 NM_014521 ENSG00000130147 SH3BP4 BOG25|TTP SH3 domain binding protein 4 protein-coding 281.25-13 chr8 27195448 27195867 + 1.25 NA Intergenic L1MEc|LINE|L1 62747 NM_030795 81551 Hs.201058 NM_030795 ENSG00000015592 STMN4 RB3 stathmin 4 protein-coding 295.5-6 chr3 66163632 66164247 + 1.25 NA intron (NM_173471, intron 1 of 10) MER20|DNA|hAT-Charlie 30329 NM_173471 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 299.5-4 chr12 81698825 81699166 + 1.25 NA intron (NM_003625, intron 3 of 32) intron (NM_003625, intron 3 of 32) 59512 NM_001220476 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 183.25-72 chr8 68575787 68575956 + 1.25 NA intron (NR_146186, intron 7 of 12) intron (NR_146186, intron 7 of 12) -244380 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 191.75-33 chr2 122741995 122742205 + 1.25 NA Intergenic Intergenic 331381 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 335-5 chr4 89662931 89663239 + 1.25 NA Intergenic L1MEd|LINE|L1 -173316 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 353.5-3 chr14 48715359 48715937 + 1.25 NA Intergenic Intergenic 870732 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 255.5-9 chr14 36869571 36870042 + 1.25 NA intron (NM_001171170, intron 2 of 10) intron (NM_001171170, intron 2 of 10) 82585 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 261.75-13 chr3 40809193 40809624 + 1.25 NA Intergenic L1MB8|LINE|L1 284448 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 243-23 chr9 69530368 69530602 + 1.25 NA intron (NM_001163, intron 1 of 12) L1PB4|LINE|L1 141886 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 400-3 chr6 161096999 161097500 + 1.25 NA intron (NM_001363582, intron 16 of 25) intron (NM_001363582, intron 16 of 25) 64733 NR_024277 79992 Hs.664873 NM_024929 ENSG00000279355 AGPAT4-IT1 C6orf59|NCRNA00241 AGPAT4 intronic transcript 1 ncRNA 165-49 chr20 18306864 18307094 + 1.25 NA intron (NM_001352450, intron 8 of 9) L1MEf|LINE|L1 18452 NM_001352462 7692 Hs.472221 NM_003434 ENSG00000125846 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 341.25 chr1 84639007 84639313 + 1.25 NA Intergenic Tigger9b|DNA|TcMar-Tigger -4140 NR_027379 439927 Hs.407054 NM_001033660 ENSG00000180869 LINC01555 C1orf180 long intergenic non-protein coding RNA 1555 ncRNA 246.5-23 chr7 5066747 5067120 + 1.25 NA 3' UTR (NM_021163, exon 5 of 5) 3' UTR (NM_021163, exon 5 of 5) -5127 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 185.5-24 chr13 27517961 27518302 + 1.25 NA Intergenic L1MB7|LINE|L1 -67529 NM_152912 219402 Hs.534582 NM_152912 ENSG00000122033 MTIF3 IF3mt mitochondrial translational initiation factor 3 protein-coding 207.75-49 chr8 52674837 52675065 + 1.25 NA intron (NM_001083617, intron 6 of 23) intron (NM_001083617, intron 6 of 23) 39484 NM_014781 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 214.75-21 chr14 69082478 69082719 + 1.25 NA intron (NM_003861, intron 6 of 8) intron (NM_003861, intron 6 of 8) 70001 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 236-31 chr7 114133193 114133562 + 1.25 NA intron (NR_033766, intron 1 of 19) L2a|LINE|L2 47050 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 319.25-7 chr7 40960416 40960803 + 1.25 NA Intergenic Intergenic 19330 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 301-7 chr5 94220659 94220938 + 1.25 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -109099 NM_001163417 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 372.25-5 chr8 99277772 99278268 + 1.25 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 258710 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 306.5-2 chr13 26797098 26797512 + 1.25 NA Intergenic Intergenic -36519 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 201.75-12 chr15 48253705 48254027 + 1.25 NA intron (NM_001184832, intron 15 of 26) L1ME1|LINE|L1 47564 NM_001184832 6557 Hs.123116 NM_000338 ENSG00000074803 SLC12A1 BSC1|NKCC2 solute carrier family 12 member 1 protein-coding 231.75-24 chr5 122996363 122996632 + 1.25 NA intron (NM_014035, intron 3 of 6) intron (NM_014035, intron 3 of 6) 40228 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 173.5-76 chr6 156869012 156869279 + 1.25 NA intron (NM_017519, intron 2 of 18) intron (NM_017519, intron 2 of 18) -89414 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA 161-55 chr3 88539124 88539345 + 1.25 NA Intergenic Intergenic 200778 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 179.75-3 chr1 209600974 209601283 + 1.25 NA intron (NM_020439, intron 3 of 12) L2a|LINE|L2 17414 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 323-5 chr3 185248676 185249034 + 1.25 NA intron (NM_001966, intron 1 of 6) intron (NM_001966, intron 1 of 6) 4417 NR_106712 100847054 NR_106712 ENSG00000264614 MIR5588 - microRNA 5588 ncRNA 351-2 chr7 16394038 16394390 + 1.25 NA intron (NM_001101426, intron 2 of 9) L1ME3D|LINE|L1 27324 NM_001368197 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 287.75-3 chr11 16396195 16396660 + 1.25 NA intron (NM_001367872, intron 3 of 16) intron (NM_001367872, intron 3 of 16) 6436 NM_017508 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 271.75-16 chr5 9728243 9728657 + 1.25 NA intron (NR_027112, intron 5 of 12) intron (NR_027112, intron 5 of 12) -98099 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 318.5-4 chr20 47528021 47528480 + 1.25 NA intron (NM_181659, intron 1 of 22) intron (NM_181659, intron 1 of 22) 26363 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 182-36 chr21 30556200 30556632 + 1.25 NA Intergenic Intergenic 4897 NM_181614 337974 Hs.553696 NM_181614 ENSG00000244362 KRTAP19-7 KAP19.7 keratin associated protein 19-7 protein-coding 242.25-11 chr2 193641552 193641876 + 1.25 NA Intergenic L1MA9|LINE|L1 -702555 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 245.5-13 chr14 43706122 43706422 + 1.25 NA Intergenic Intergenic 801011 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 247-15 chr21 27677345 27677670 + 1.25 NA Intergenic Intergenic -44872 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 243.25-27 chr6 93112221 93112534 + 1.25 NA Intergenic MER5A|DNA|hAT-Charlie 307182 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 212.5-7 chr10 110413972 110414271 + 1.25 NA Intergenic Intergenic -83786 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 476 chr12 83363794 83364459 + 1.25 NA Intergenic MIR|SINE|MIR 676971 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 278-7 chr4 28501805 28502383 + 1.25 NA Intergenic L2a|LINE|L2 -317488 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 203.5-40 chr3 37347327 37347598 + 1.25 NA intron (NM_001172713, intron 21 of 22) intron (NM_001172713, intron 21 of 22) -38807 NM_178344 339883 Hs.475945 NM_178339 ENSG00000198590 C3orf35 APRG1 chromosome 3 open reading frame 35 protein-coding 214.25-11 chr14 57481873 57482125 + 1.25 NA intron (NM_018168, intron 3 of 5) intron (NM_018168, intron 3 of 5) 11858 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 167.5-51 chr2 239156811 239157100 + 1.25 NA intron (NM_006037, intron 6 of 26) intron (NM_006037, intron 6 of 26) 38502 NR_026664 85009 Hs.744565 NM_032923 MGC16025 - uncharacterized LOC85009 ncRNA 288.5-12 chr3 101580924 101581293 + 1.25 NA intron (NR_135226, intron 2 of 2) intron (NR_135226, intron 2 of 2) 6928 NM_020357 57092 Hs.732633 NM_020357 ENSG00000081154 PCNP - PEST proteolytic signal containing nuclear protein protein-coding 433.75 chr5 144916974 144917758 + 1.25 NA Intergenic Intergenic 711975 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 360.75 chr1 71528901 71529371 + 1.25 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 307876 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 269-6 chr2 73029335 73029699 + 1.25 NA intron (NR_138476, intron 3 of 14) MIRc|SINE|MIR 29655 NM_001330408 94097 Hs.368171 NM_144579 ENSG00000144040 SFXN5 BBG-TCC|SLC56A5 sideroflexin 5 protein-coding 236-30 chr7 67988816 67989163 + 1.25 NA Intergenic Intergenic -31264 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 304.5-6 chr6 48059522 48059798 + 1.25 NA intron (NM_207499, intron 1 of 2) AluSc|SINE|Alu 9029 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 260.5-15 chr6 115415680 115416059 + 1.25 NA Intergenic MER4D0|LTR|ERV1 227966 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 170-2 chr1 51364569 51364726 + 1.25 NA intron (NM_001159969, intron 10 of 12) AluJo|SINE|Alu -19531 NM_001144832 22996 Hs.112949 NM_001080494 ENSG00000085831 TTC39A C1orf34|DEME-6 tetratricopeptide repeat domain 39A protein-coding 272-12 chr5 119490053 119490419 + 1.25 NA intron (NM_001199291, intron 10 of 24) intron (NM_001199291, intron 10 of 24) 37739 NM_001199292 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 345.25-4 chr2 156969730 156970302 + 1.25 NA Intergenic MIRb|SINE|MIR -287689 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 337.5-6 chr3 98636748 98637247 + 1.25 NA Intergenic L1M2|LINE|L1 -43386 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 414.25 chr12 56581414 56581920 + 1.25 NA intron (NM_002898, intron 7 of 13) intron (NM_002898, intron 7 of 13) 48659 NM_001300905 11176 Hs.314263 NM_013449 ENSG00000076108 BAZ2A TIP5|WALp3 bromodomain adjacent to zinc finger domain 2A protein-coding 254.25-3 chr12 10158258 10158774 + 1.25 NA 3' UTR (NM_002543, exon 6 of 6) 3' UTR (NM_002543, exon 6 of 6) -12083 NM_001079815 120939 Hs.226422 NM_153022 ENSG00000165685 TMEM52B C12orf59 transmembrane protein 52B protein-coding 322.75-4 chr7 31137584 31137961 + 1.25 NA Intergenic Intergenic 85311 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 240-22 chr4 92459023 92459314 + 1.25 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 154769 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 347.5-9 chr5 51575015 51575556 + 1.25 NA Intergenic L1MA4A|LINE|L1 191837 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 298.25-6 chr3 85775202 85775667 + 1.25 NA intron (NM_001256504, intron 3 of 10) intron (NM_001256504, intron 3 of 10) 48952 NM_153184 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 301.25 chr10 112425644 112426045 + 1.25 NA intron (NM_001363544, intron 11 of 11) intron (NM_001363544, intron 11 of 11) 21070 NM_022494 64429 Hs.196990 NM_022494 ENSG00000023041 ZDHHC6 DHHC-6|ZNF376 zinc finger DHHC-type containing 6 protein-coding 355.5-3 chr17 37995572 37996001 + 1.25 NA Intergenic AluSg|SINE|Alu -6724 NM_001123392 729877 Hs.105891 NM_001123392 ENSG00000274226 TBC1D3H - TBC1 domain family member 3H protein-coding 293.25-8 chr4 176102456 176102908 + 1.25 NA intron (NM_170710, intron 2 of 30) L1MC2|LINE|L1 36841 NM_181265 116966 Hs.532056 NM_170710 ENSG00000150627 WDR17 - WD repeat domain 17 protein-coding 358-2 chr2 13835405 13835861 + 1.25 NA Intergenic Intergenic 565325 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 219-25 chr6 63226997 63227482 + 1.25 NA Intergenic L1MC4|LINE|L1 92738 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 216-17 chr15 43439790 43440038 + 1.25 NA intron (NM_001355001, intron 16 of 28) intron (NM_001355001, intron 16 of 28) 53242 NM_001141980 7158 Hs.440968 NM_005657 ENSG00000067369 TP53BP1 53BP1|TDRD30|p202|p53BP1 tumor protein p53 binding protein 1 protein-coding 348.5 chr1 63217542 63218067 + 1.25 NA intron (NR_038252, intron 4 of 11) intron (NR_038252, intron 4 of 11) 99453 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 154.5-65 chr3 191035613 191035764 + 1.25 NA Intergenic MER63B|DNA|hAT-Blackjack 157758 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 372.5 chr16 52396883 52397258 + 1.25 NA Intergenic Intergenic 138506 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 250.25-22 chr8 57047712 57048177 + 1.25 NA Intergenic Charlie5|DNA|hAT-Charlie -54077 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 253.75-24 chr5 166376808 166377262 + 1.25 NA Intergenic Zaphod|DNA|hAT-Tip100 549335 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 200.5-56 chr7 22264033 22264383 + 1.25 NA intron (NM_012294, intron 7 of 25) intron (NM_012294, intron 7 of 25) -69398 NM_001367602 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 247.75-20 chr4 62040913 62041526 + 1.25 NA intron (NM_001371343, intron 22 of 23) intron (NM_001371343, intron 22 of 23) 120546 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 231-26 chr6 88496759 88497046 + 1.25 NA Intergenic L1ME4b|LINE|L1 42467 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 375.25 chr12 9049745 9050208 + 1.25 NA Intergenic Intergenic 15094 NR_034140 253128 Hs.408739 NM_001039381 ENSG00000214851 LINC00612 C12orf33 long intergenic non-protein coding RNA 612 ncRNA 233.25-21 chr3 30990940 30991155 + 1.25 NA Intergenic Intergenic -96386 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 166.5-53 chr3 137840372 137840562 + 1.25 NA Intergenic L1MEc|LINE|L1 68556 NR_109987 100507274 Hs.360349 NR_109987 ENSG00000239513 LINC01210 - long intergenic non-protein coding RNA 1210 ncRNA 184.5-12 chr1 248209602 248209815 + 1.25 NA Intergenic L1PB1|LINE|L1 6640 NM_001004689 127062 Hs.553581 NM_001004689 ENSG00000228198 OR2M3 OR1-54|OR2M3P|OR2M6|OST003 olfactory receptor family 2 subfamily M member 3 protein-coding 189.5-20 chr15 40391632 40391816 + 1.25 NA intron (NM_033286, intron 7 of 8) Tigger19b|DNA|TcMar-Tigger 9003 NM_001142762 90417 Hs.525796 NM_033286 ENSG00000128944 KNSTRN C15orf23|HSD11|SKAP|TRAF4AF1 kinetochore localized astrin (SPAG5) binding protein protein-coding 220.25-18 chr18 72130861 72131212 + 1.25 NA Intergenic Intergenic -348810 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 169-53 chr6 1401197 1401352 + 1.25 NA Intergenic L1MA7|LINE|L1 -10863 NR_106778 102466720 NR_106778 ENSG00000275859 MIR6720 hsa-mir-6720|mir-6720 microRNA 6720 ncRNA 281.75-18 chr7 14615339 14615755 + 1.25 NA intron (NM_001350717, intron 14 of 24) intron (NM_001350717, intron 14 of 24) 225903 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 386.25-3 chr14_GL000225v1_random 67287 68115 + 1.25 NA NA BSR/Beta|Satellite|Satellite NA NA 261.25-10 chr4 110816222 110816450 + 1.25 NA Intergenic Intergenic 44311 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 241.75-22 chr6 130610772 130610986 + 1.25 NA Intergenic Intergenic 173762 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 265.5-12 chr2 124494882 124495234 + 1.25 NA intron (NM_001367498, intron 7 of 23) L1ME4a|LINE|L1 469771 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 166.75-60 chr4 31157454 31157675 + 1.25 NA Intergenic Intergenic -13580 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 239.5-5 chr11 32135534 32135871 + 1.25 NA Intergenic Intergenic 8210 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 226.5-4 chr1 216336209 216336438 + 1.25 NA intron (NM_206933, intron 4 of 71) L1M4|LINE|L1 87073 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 216.5-28 chr4 101344069 101344266 + 1.25 NA intron (NM_001130691, intron 1 of 12) intron (NM_001130691, intron 1 of 12) 3359 NM_000944 5530 Hs.435512 NM_000944 ENSG00000138814 PPP3CA ACCIID|CALN|CALNA|CALNA1|CCN1|CNA1|IECEE|IECEE1|PPP2B protein phosphatase 3 catalytic subunit alpha protein-coding 304.5-4 chr3 148123161 148123612 + 1.25 NA Intergenic Tigger3c|DNA|TcMar-Tigger 45227 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 449.75-2 chrX 85838065 85838710 + 1.25 NA Intergenic L1M5|LINE|L1 2607 NR_031710 100302171 NR_031710 ENSG00000283435 MIR1321 MIRN1321|hsa-mir-1321 microRNA 1321 ncRNA 357.5-3 chr7 12560159 12560593 + 1.25 NA Intergenic Intergenic -10344 NM_001112706 85477 Hs.633359 NM_033128 ENSG00000006747 SCIN - scinderin protein-coding 394-2 chr7 37297849 37298209 + 1.25 NA intron (NM_001206480, intron 4 of 21) intron (NM_001206480, intron 4 of 21) 55639 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 365 chr14 47171247 47171772 + 1.25 NA intron (NM_001113498, intron 3 of 16) intron (NM_001113498, intron 3 of 16) 171737 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 444.75-2 chr2 122282536 122282978 + 1.25 NA Intergenic Intergenic 527106 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 296.25-8 chr17_KI270729v1_random 2191 2726 + 1.25 NA NA (TTCCA)n|Simple_repeat|Simple_repeat NA NA 153.5-35 chr15 49440058 49440331 + 1.25 NA intron (NM_002009, intron 2 of 3) MIR3|SINE|MIR 16952 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 290.25-4 chr10 35547743 35548294 + 1.25 NA intron (NM_181698, intron 9 of 11) intron (NM_181698, intron 9 of 11) -57323 NM_153368 219770 Hs.638922 NM_153368 ENSG00000177291 GJD4 CX40.1 gap junction protein delta 4 protein-coding 149-52 chr20 58086427 58086710 + 1.25 NA Intergenic Intergenic -64334 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 300-5 chr6 160946280 160946576 + 1.25 NA Intergenic Intergenic -45299 NR_120425 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 258-14 chr5 104553097 104553472 + 1.25 NA Intergenic Intergenic -546190 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 301.75-3 chr15 57829563 57830041 + 1.25 NA Intergenic Intergenic 123088 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 307-5 chr6 50652322 50652789 + 1.25 NA Intergenic Intergenic -60989 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 216-18 chr15 63038607 63038993 + 1.25 NA Intergenic Intergenic -3947 NM_001301244 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 384.5 chr3 105388746 105389368 + 1.25 NA intron (NM_001243280, intron 1 of 14) MIR|SINE|MIR 22148 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 174.75-7 chr1 195846470 195846781 + 1.25 NA Intergenic Intergenic 242090 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 249-2 chr11 111248727 111249115 + 1.25 NA intron (NM_198498, intron 1 of 4) intron (NM_198498, intron 1 of 4) 3196 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 242-12 chr18 65877905 65878240 + 1.25 NA intron (NM_001362438, intron 11 of 11) MIRb|SINE|MIR 127060 NM_004361 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 266-7 chr2 40294546 40294904 + 1.25 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 135579 NM_021097 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 402.75 chr13 56398175 56398822 + 1.25 NA Intergenic MER4CL34|LTR|ERV1 -742420 NM_001130407 729250 Hs.525056 NM_001130407 ENSG00000234278 PRR20E PRR20|PRR20A|PRR20B|PRR20C|PRR20D proline rich 20E protein-coding 300.75-4 chr18 72488215 72488649 + 1.25 NA Intergenic MIR|SINE|MIR 55910 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 270-9 chr3 61770672 61770979 + 1.25 NA intron (NM_002841, intron 2 of 29) intron (NM_002841, intron 2 of 29) 209254 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 258-8 chr14 75361298 75361688 + 1.25 NA Intergenic Intergenic -66231 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 172.75-4 chr1 164681359 164681503 + 1.25 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 93210 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 297.5-14 chr8 122765867 122766410 + 1.25 NA Intergenic L1MD2|LINE|L1 -15517 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 355.5-4 chr2 18413407 18413700 + 1.25 NA Intergenic Intergenic 147100 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 168.75-69 chr3 102813035 102813187 + 1.25 NA Intergenic Intergenic 378096 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 229.75-4 chr11 10855978 10856210 + 1.25 NA intron (NM_021211, intron 2 of 2) intron (NM_021211, intron 2 of 2) 1959 NM_001143667 58486 Hs.655066 NM_021211 ENSG00000236287 ZBED5 Buster1 zinc finger BED-type containing 5 protein-coding 210.25-40 chr8 70906860 70907159 + 1.25 NA Intergenic L1ME1|LINE|L1 237670 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 368 chr5 10070754 10071084 + 1.25 NA Intergenic Intergenic -167095 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 605.5 chr1 84534028 84534911 + 1.25 NA intron (NM_001310156, intron 8 of 13) MIR|SINE|MIR -27888 NM_005274 2787 Hs.645427 NM_005274 ENSG00000174021 GNG5 - G protein subunit gamma 5 protein-coding 236-7 chr12 13137890 13138187 + 1.25 NA Intergenic AluJr|SINE|Alu -34371 NM_001367358 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 295-5 chr5 61211978 61212263 + 1.25 NA intron (NR_109908, intron 3 of 3) L1ME2z|LINE|L1 -49652 NM_001048249 643155 Hs.508479 NM_001048249 ENSG00000188725 SMIM15 C5orf43 small integral membrane protein 15 protein-coding 236-37 chr9 30538668 30539091 + 1.25 NA Intergenic L1MA5|LINE|L1 -130425 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 290 chr18 76747573 76748083 + 1.25 NA Intergenic MER65-int|LTR|ERV1 57799 NR_122073 400661 Hs.514963 NR_122073 ENSG00000276397 LINC01879 - long intergenic non-protein coding RNA 1879 ncRNA 288.5-10 chr3 76051203 76051491 + 1.25 NA Intergenic Intergenic -265798 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 195.5-23 chr16 64206294 64206573 + 1.25 NA Intergenic Intergenic 915630 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 170.75-50 chr4 158819876 158820105 + 1.25 NA intron (NM_001366843, intron 1 of 17) L2a|LINE|L2 14151 NM_001366843 57600 Hs.652441 NM_020840 ENSG00000052795 FNIP2 FNIPL|MAPO1 folliculin interacting protein 2 protein-coding 328.25-3 chr12 84375420 84375924 + 1.25 NA Intergenic Intergenic 537127 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 233.25-25 chr4 66076630 66077025 + 1.25 NA Intergenic L1MA9|LINE|L1 -199997 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 268.25-17 chr3 150333621 150333903 + 1.25 NA Intergenic Intergenic -10015 NR_110187 101928022 Hs.555199 NR_110186 LINC01214 - long intergenic non-protein coding RNA 1214 ncRNA 347.25-8 chr5 36827631 36828183 + 1.25 NA Intergenic L2|LINE|L2 48787 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 336.75-2 chr7 41678844 41679461 + 1.25 NA Intergenic Intergenic -14767 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 287.5-19 chr8 75946196 75946574 + 1.25 NA Intergenic (CCTT)n|Simple_repeat|Simple_repeat 406417 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 319.5 chr11 25998524 25999043 + 1.25 NA Intergenic L1MB8|LINE|L1 -190340 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 303.75 chr12 1250802 1251086 + 1.25 NA intron (NR_027946, intron 13 of 18) intron (NR_027946, intron 13 of 18) 223196 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 199.75-42 chr4 116355826 116356046 + 1.25 NA Intergenic Intergenic 56211 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 480 chr7 6196899 6197499 + 1.25 NA intron (NM_001367581, intron 1 of 13) intron (NM_001367581, intron 1 of 13) -25062 NM_001367582 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 252.5-20 chr4 95402670 95402906 + 1.25 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 146185 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 281.25 chr11 99215757 99216094 + 1.25 NA intron (NM_001243270, intron 1 of 23) L1MA4|LINE|L1 194976 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 317.75-6 chr6 62401550 62401978 + 1.25 NA Intergenic Intergenic -115537 NM_001350622 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 274-6 chr2 63482199 63482538 + 1.25 NA intron (NR_148704, intron 7 of 18) intron (NR_148704, intron 7 of 18) -44361 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 213.5-45 chr8 125608102 125608353 + 1.25 NA Intergenic Intergenic 176018 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 204.5-3 chr1 105337585 105337754 + 1.25 NA Intergenic Intergenic 281266 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 201.25-31 chr21 26869418 26869668 + 1.25 NA Intergenic Intergenic -24134 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 221-33 chr7 109430243 109430551 + 1.25 NA Intergenic Intergenic 529816 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 267.5-8 chr16 71210560 71210953 + 1.25 NA intron (NM_001198543, intron 1 of 18) intron (NM_001198543, intron 1 of 18) 19966 NM_001270974 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 294.75-3 chr12 15339947 15340343 + 1.25 NA intron (NM_030667, intron 1 of 26) MIRb|SINE|MIR 17637 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 351.75-11 chrX 66154937 66155303 + 1.25 NA Intergenic L1ME2z|LINE|L1 -7551 NM_138737 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 388.5-3 chr4 166054719 166055307 + 1.25 NA intron (NM_012464, intron 12 of 20) intron (NM_012464, intron 12 of 20) 181776 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 300-6 chr7 40310178 40310487 + 1.25 NA intron (NM_024728, intron 8 of 14) L1MC3|LINE|L1 175356 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 235-10 chr2 25681532 25681976 + 1.25 NA Intergenic L1MC4a|LINE|L1 -8080 NM_001256304 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 329-7 chrX 31582696 31583242 + 1.25 NA intron (NM_000109, intron 55 of 78) L2c|LINE|L2 -74671 NM_004014 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 349-5 chr8 134030564 134031046 + 1.25 NA Intergenic Intergenic 144309 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 301.25-8 chr21 17018914 17019292 + 1.25 NA Intergenic L1MC3|LINE|L1 -419787 NR_037585 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 210-58 chr9 25294133 25294477 + 1.25 NA Intergenic L1ME3F|LINE|L1 384553 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 376.25-2 chr20 3284995 3285516 + 1.25 NA intron (NM_001009984, intron 27 of 36) intron (NM_001009984, intron 27 of 36) -46065 NM_001363745 83959 Hs.105607 NM_032034 ENSG00000088836 SLC4A11 BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2 solute carrier family 4 member 11 protein-coding 199-15 chr2 80625105 80625390 + 1.25 NA intron (NM_001320810, intron 12 of 12) intron (NM_001320810, intron 12 of 12) 311868 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 170.5-29 chr18 13508640 13508895 + 1.25 NA intron (NM_181482, intron 4 of 5) Tigger1|DNA|TcMar-Tigger 48820 NR_049822 100847080 NR_049822 ENSG00000266146 MIR5190 - microRNA 5190 ncRNA 209.75-21 chr2 124377037 124377418 + 1.25 NA intron (NM_130773, intron 3 of 23) intron (NM_130773, intron 3 of 23) 351940 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 212 chr1 27759665 27759974 + 1.25 NA intron (NM_001143914, intron 7 of 7) AluJr|SINE|Alu -13400 NM_177424 23673 Hs.523855 NM_177424 ENSG00000117758 STX12 STX13|STX14 syntaxin 12 protein-coding 223.75-12 chr18 11493504 11493869 + 1.25 NA intron (NR_110778, intron 1 of 2) intron (NR_110778, intron 1 of 2) 3638 NR_110778 101927433 Hs.331210 NR_110778 ENSG00000267252 LINC01255 - long intergenic non-protein coding RNA 1255 ncRNA 243.5-26 chr9 27766629 27767014 + 1.25 NA Intergenic MIRb|SINE|MIR -192955 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 361.75-4 chr5 78017961 78018323 + 1.25 NA intron (NM_003664, intron 25 of 26) intron (NM_003664, intron 25 of 26) 59895 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 199-4 chr10 89967495 89967771 + 1.25 NA Intergenic Intergenic -10260 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 254.75-19 chr5 76300440 76300805 + 1.25 NA intron (NM_014979, intron 10 of 12) intron (NM_014979, intron 10 of 12) -102663 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 248.5-12 chr2 195400870 195401123 + 1.25 NA Intergenic Intergenic -255962 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 195.75-62 chr5 123107682 123108012 + 1.25 NA intron (NM_001136239, intron 3 of 7) intron (NM_001136239, intron 3 of 7) -17531 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 236-34 chr8 88104941 88105180 + 1.25 NA intron (NM_005941, intron 6 of 9) Tigger3|DNA|TcMar-Tigger 222423 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 172.5-31 chr17 65401309 65401514 + 1.25 NA Intergenic Intergenic -56130 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 212.5-28 chr21 29684204 29684487 + 1.25 NA intron (NM_001320621, intron 1 of 13) (ATCT)n|Simple_repeat|Simple_repeat -63830 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 212.75-12 chr18 72169470 72170113 + 1.25 NA Intergenic L1M5|LINE|L1 374551 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 198-34 chr5 105156067 105156252 + 1.25 NA Intergenic L1ME4c|LINE|L1 56685 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 272.25-20 chrX 85501889 85502208 + 1.25 NA Intergenic Intergenic -122383 NM_001307940 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 198.5-40 chr5 26256039 26256244 + 1.25 NA Intergenic Intergenic 782445 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 241-30 chr8 106994702 106994997 + 1.25 NA Intergenic Intergenic -224605 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 234-11 chr5 4392285 4392551 + 1.25 NA Intergenic L1PB4|LINE|L1 -381063 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 183.25-5 chr1 155872962 155873189 + 1.25 NA intron (NM_152280, intron 2 of 3) intron (NM_152280, intron 2 of 3) 13508 NM_152280 23208 Hs.32984 NM_152280 ENSG00000132718 SYT11 SYT12|sytXI synaptotagmin 11 protein-coding 282.5-13 chr5 54774062 54774394 + 1.25 NA Intergenic Intergenic -29970 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 170.25-65 chr7 7055407 7055665 + 1.25 NA Intergenic MER3|DNA|hAT-Charlie 11509 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 400.75-2 chr21 15791631 15792092 + 1.25 NA intron (NM_001283042, intron 5 of 24) intron (NM_001283042, intron 5 of 24) 61879 NM_001283042 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 254.25-2 chr11 34835897 34836241 + 1.25 NA Intergenic AluJo|SINE|Alu -80061 NM_001135024 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDHXD|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 301-5 chr21 26685888 26686157 + 1.25 NA Intergenic Intergenic -112736 NR_135472 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 206-8 chr14 57053572 57053773 + 1.25 NA Intergenic Charlie8|DNA|hAT-Charlie 215233 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 379-2 chr17 57182557 57182987 + 1.25 NA Intergenic L1MEc|LINE|L1 -73079 NM_001322250 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 318 chr11 115513277 115513681 + 1.25 NA Intergenic Intergenic -9064 NM_001301043 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 217-10 chr17 56175243 56175523 + 1.25 NA intron (NM_153228, intron 1 of 16) intron (NM_153228, intron 1 of 16) 21908 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 303.25-8 chr3 181085679 181086102 + 1.25 NA intron (NR_075091, intron 1 of 7) MER5A|DNA|hAT-Charlie 29210 NR_075091 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 201.25-40 chr5 63597229 63597638 + 1.25 NA Intergenic L1M5|LINE|L1 364859 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 215.25-35 chr5 44854117 44854441 + 1.25 NA Intergenic Intergenic 45332 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 439.25 chr2 11606107 11606760 + 1.25 NA intron (NM_014668, intron 17 of 32) L1ME1|LINE|L1 63747 NM_033090 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 165.75-20 chr10 105759959 105760153 + 1.25 NA intron (NR_120625, intron 3 of 3) intron (NR_120625, intron 3 of 3) 60277 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 294.25-7 chr2 162691209 162691468 + 1.25 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -77598 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 271.25-16 chr6 54777072 54777615 + 1.25 NA Intergenic MER4D|LTR|ERV1 -69428 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 421.25-2 chr5 126012980 126013661 + 1.25 NA Intergenic Intergenic -166257 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 384.25-2 chr5 25245063 25245759 + 1.25 NA intron (NR_136209, intron 1 of 3) MLT2A2|LTR|ERVL 54458 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 209-8 chr10 84985426 84985606 + 1.25 NA Intergenic L4_C_Mam|LINE|RTE-X 213389 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 198-30 chr4 132051383 132051650 + 1.25 NA Intergenic Intergenic 286678 NR_125883 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 283.5-17 chr6 75267782 75268150 + 1.25 NA intron (NM_018247, intron 1 of 6) intron (NM_018247, intron 1 of 6) 16826 NM_001143958 55754 Hs.108530 NM_018247 ENSG00000112697 TMEM30A C6orf67|CDC50A transmembrane protein 30A protein-coding 277.5-20 chr7 78807378 78807721 + 1.25 NA intron (NM_001301128, intron 2 of 20) Charlie1b|DNA|hAT-Charlie -201439 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 318.25-5 chr6 48028781 48029058 + 1.25 NA intron (NM_207499, intron 1 of 2) MER31-int|LTR|ERV1 39770 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 195.25-17 chr16 79844266 79844552 + 1.25 NA Intergenic Helitron3Na_Mam|RC|Helitron 49160 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 208.75-29 chr5 92891187 92891428 + 1.25 NA Intergenic Intergenic 680036 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 272.25-14 chr5 37544120 37544551 + 1.25 NA intron (NM_001345998, intron 9 of 17) intron (NM_001345998, intron 9 of 17) 165017 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 246.25-25 chr22 28067633 28067848 + 1.25 NA intron (NM_001145418, intron 12 of 22) intron (NM_001145418, intron 12 of 22) -147128 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 171.75-6 chr1 156645001 156645183 + 1.25 NA intron (NM_021948, intron 1 of 13) intron (NM_021948, intron 1 of 13) 2975 NM_198427 63827 Hs.516904 NM_021948 ENSG00000132692 BCAN BEHAB|CSPG7 brevican protein-coding 286.5-8 chr22 30146372 30146724 + 1.25 NA intron (NM_001329457, intron 11 of 11) L1ME2|LINE|L1 66084 NM_001329457 150280 Hs.120391 NM_152510 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 189.75-48 chr3 84654967 84655253 + 1.25 NA intron (NR_033860, intron 19 of 20) L1PB4|LINE|L1 214465 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 149.5-98 chr8 113741551 113741739 + 1.25 NA Intergenic L2|LINE|L2 -304706 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 205.25-6 chr10 62325738 62326029 + 1.25 NA Intergenic L1ME4b|LINE|L1 -48274 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 264.5-23 chr8 105533170 105533541 + 1.25 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 213812 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 192.75-26 chr2 4396019 4396275 + 1.25 NA Intergenic L1MA4|LINE|L1 260075 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 443.5 chr1 39391030 39391834 + 1.25 NA intron (NM_012090, intron 52 of 92) intron (NM_012090, intron 52 of 92) -17641 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 279.5-18 chr9 102795044 102795522 + 1.25 NA Intergenic Intergenic -200050 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 201.5-60 chr6 125683250 125683504 + 1.25 NA intron (NR_038906, intron 2 of 3) L2a|LINE|L2 9024 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 248.5-22 chr6 145950204 145950533 + 1.25 NA exon (NM_173082, exon 4 of 30) exon (NM_173082, exon 4 of 30) 13729 NM_173082 257218 Hs.723297 NM_173082 ENSG00000146414 SHPRH bA545I5.2 SNF2 histone linker PHD RING helicase protein-coding 156.5-43 chr18 3083826 3084116 + 1.25 NA intron (NM_019856, intron 31 of 36) intron (NM_019856, intron 31 of 36) -72024 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 315.25-4 chr14 73472790 73473193 + 1.25 NA Intergenic MIRb|SINE|MIR -9349 NR_135251 101928143 Hs.654609 NR_135251 ENSG00000284930 LOC101928143 - uncharacterized LOC101928143 ncRNA 225.5-4 chr1 156576737 156577050 + 1.25 NA Intergenic AluJb|SINE|Alu -4328 NM_178229 128239 Hs.591495 NM_178229 ENSG00000183856 IQGAP3 - IQ motif containing GTPase activating protein 3 protein-coding 281.75-2 chr1 118222103 118222567 + 1.25 NA Intergenic Intergenic -37107 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 194.25-10 chr14 45924088 45924411 + 1.25 NA Intergenic L1ME1|LINE|L1 -139910 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 208-31 chr6 38510031 38510546 + 1.25 NA intron (NM_001172418, intron 5 of 10) Tigger3b|DNA|TcMar-Tigger 28692 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 229.75-24 chr4 113630974 113631325 + 1.25 NA intron (NM_001221, intron 3 of 18) intron (NM_001221, intron 3 of 18) 130589 NM_001321591 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 246.5-18 chr4 59175434 59175831 + 1.25 NA Intergenic Intergenic 162059 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 337.5-2 chr1 191055707 191056158 + 1.25 NA Intergenic Intergenic 172566 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 395.75 chr12 40373609 40373999 + 1.25 NA Intergenic MIR|SINE|MIR -19590 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 263.5-17 chr4 184165579 184165951 + 1.25 NA intron (NM_153343, intron 1 of 7) intron (NM_153343, intron 1 of 7) 52108 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 351.75-10 chr9 34233754 34234196 + 1.25 NA intron (NM_001171202, intron 2 of 5) L2a|LINE|L2 54932 NM_016525 51271 Hs.268963 NM_016525 ENSG00000165006 UBAP1 NAG20|SPG80|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 362 chr14 52418988 52419464 + 1.25 NA Intergenic Intergenic 104914 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 210.75-18 chr14 56859564 56859743 + 1.25 NA intron (NR_146411, intron 2 of 2) L1MA9|LINE|L1 46495 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 232.5-29 chr3 39947196 39947487 + 1.25 NA intron (NM_001284424, intron 2 of 15) L1MC4|LINE|L1 137681 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 385.25-3 chr9 31088394 31088738 + 1.25 NA Intergenic Intergenic 292924 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 221.25-4 chr1 118683547 118683765 + 1.25 NA Intergenic L1MA4A|LINE|L1 304687 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 300.75-5 chr6 48201219 48201749 + 1.25 NA Intergenic Intergenic -132795 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 169.5-11 chr10 37269804 37270000 + 1.25 NA Intergenic Intergenic -39284 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 244.5-32 chr9 29091364 29091603 + 1.25 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 120816 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 220.25-38 chr6 152401524 152401884 + 1.25 NA intron (NM_182961, intron 46 of 145) intron (NM_182961, intron 46 of 145) 21174 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 192-2 chr1 156588969 156589246 + 1.25 NA Intergenic MER34|LTR|ERV1 -2669 NM_144772 128240 Hs.528320 NM_144772 ENSG00000163382 NAXE AIBP|APOA1BP|PEBEL|YJEFN1 NAD(P)HX epimerase protein-coding 279.5-13 chr6 67335377 67335764 + 1.25 NA Intergenic Intergenic -719781 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 249.5-30 chr8 129229078 129229435 + 1.25 NA intron (NR_033916, intron 1 of 2) intron (NR_033916, intron 1 of 2) 11984 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 331 chr8 135560359 135560902 + 1.25 NA intron (NM_006558, intron 5 of 8) intron (NM_006558, intron 5 of 8) 103174 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 235.25-6 chr14 71424651 71424955 + 1.25 NA intron (NM_015556, intron 4 of 26) L1MB3|LINE|L1 -14136 NM_001284247 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 187.25-18 chr12 77975947 77976201 + 1.25 NA intron (NM_001024383, intron 5 of 39) L2a|LINE|L2 145180 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 219.75-44 chr8 137588150 137588397 + 1.25 NA Intergenic Intergenic -174685 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 244.5-18 chr2 53910532 53910853 + 1.25 NA intron (NM_014614, intron 20 of 46) intron (NM_014614, intron 20 of 46) -50659 NM_001164165 100302652 Hs.40763 NM_001164165 ENSG00000270898 GPR75-ASB3 ASB-3|ASB3 GPR75-ASB3 readthrough protein-coding 244-21 chr3 162299552 162299844 + 1.25 NA Intergenic Intergenic 802890 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 309.25-9 chr8 82953843 82954196 + 1.25 NA intron (NR_134295, intron 2 of 3) ERVL-B4-int|LTR|ERVL 41915 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 236.5-16 chr2 166725977 166726272 + 1.25 NA Intergenic Intergenic -162363 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 148.75-93 chr6 101973044 101973248 + 1.25 NA intron (NM_001166247, intron 13 of 16) intron (NM_001166247, intron 13 of 16) 574161 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 334.5-3 chr14 71795513 71796045 + 1.25 NA Intergenic Tigger2|DNA|TcMar-Tigger -136392 NM_001370289 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 381.25 chr17 68737572 68738290 + 1.25 NA Intergenic L1ME3|LINE|L1 109777 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 226.25-2 chr1 81226479 81226725 + 1.25 NA Intergenic Intergenic -79590 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 149.5-64 chr3 143002808 143003019 + 1.25 NA intron (NM_001080415, intron 1 of 27) intron (NM_001080415, intron 1 of 27) 1343 NM_001080415 23350 Hs.596572 NM_001080415 ENSG00000163714 U2SURP SR140|fSAPa U2 snRNP associated SURP domain containing protein-coding 251.75-8 chr13 90437072 90437528 + 1.25 NA Intergenic L1MCb|LINE|L1 -55988 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 219.25-21 chr2 102600966 102601184 + 1.25 NA Intergenic L1MB1|LINE|L1 -18478 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 201.25-38 chr4 89661937 89662151 + 1.25 NA Intergenic HAL1ME|LINE|L1 -174357 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 297.25-9 chr7 38036963 38037251 + 1.25 NA Intergenic Intergenic 115788 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 297.75-18 chr7 27745885 27746309 + 1.25 NA intron (NM_001362794, intron 1 of 16) intron (NM_001362794, intron 1 of 16) 6002 NM_001206902 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 197.5-36 chr2 163476362 163476570 + 1.25 NA Intergenic Intergenic 259542 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 243.75-15 chr6 64745296 64745524 + 1.25 NA intron (NM_001292009, intron 22 of 43) L1MB5|LINE|L1 -556008 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 176-6 chr10 64095344 64095520 + 1.25 NA Intergenic Intergenic -573542 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 276.75 chr1 73049003 73049377 + 1.25 NA Intergenic L1PB2|LINE|L1 -256980 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 317-4 chr3 117941392 117941900 + 1.25 NA Intergenic Intergenic -250721 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 304.5 chr13 35011519 35011845 + 1.25 NA intron (NM_015678, intron 1 of 57) intron (NM_015678, intron 1 of 57) 69395 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 184.75-68 chr6 124464121 124464316 + 1.25 NA intron (NM_001300738, intron 4 of 7) AluSz6|SINE|Alu 181213 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 169.25-53 chr8 108525129 108525345 + 1.25 NA Intergenic L3b|LINE|CR1 81613 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 343.75-4 chr2 56690677 56691074 + 1.25 NA Intergenic L1PA14|LINE|L1 -505105 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 363.75 chr12 78740235 78740829 + 1.25 NA Intergenic MIRb|SINE|MIR -123450 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 267.25-15 chr8 89652714 89653102 + 1.25 NA Intergenic L1M2c|LINE|L1 104803 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 189.25-27 chr2 64287910 64288122 + 1.25 NA Intergenic MamGypLTR1b|LTR|Gypsy -52743 NR_039632 100616265 NR_039632 ENSG00000283222 MIR4433A MIR4433|hsa-mir-4433a microRNA 4433a ncRNA 145.75-111 chr7 26863202 26863347 + 1.25 NA intron (NM_003930, intron 1 of 12) intron (NM_003930, intron 1 of 12) 1316 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 331.5-13 chrX 77826245 77826531 + 1.25 NA TTS (NM_032121) TTS (NM_032121) -40172 NM_138270 546 Hs.533526 NM_000489 ENSG00000085224 ATRX JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX ATRX chromatin remodeler protein-coding 233.25-14 chr2 11058988 11059197 + 1.25 NA Intergenic L1MC5|LINE|L1 73084 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 377.25-3 chr3 104894235 104894578 + 1.25 NA Intergenic Intergenic -472307 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 189-20 chr14 60203457 60203717 + 1.25 NA Intergenic L1ME3G|LINE|L1 -33723 NM_001322280 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 281.5-32 chr8 124297717 124298191 + 1.25 NA Intergenic L1ME1|LINE|L1 -50556 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 280 chr11 74530311 74530610 + 1.25 NA Intergenic Tigger3c|DNA|TcMar-Tigger -36736 NM_001329942 387787 Hs.591971 NM_001144869 ENSG00000175536 LIPT2 - lipoyl(octanoyl) transferase 2 protein-coding 317.25-3 chr18 54498638 54499040 + 1.25 NA Intergenic L1M2|LINE|L1 -88920 NM_001307955 284254 Hs.376146 NM_173629 ENSG00000178690 DYNAP C18orf26 dynactin associated protein protein-coding 285.75-4 chr4 33627172 33627603 + 1.25 NA Intergenic Intergenic 412506 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 265.5-17 chr5 123853959 123854273 + 1.25 NA Intergenic Intergenic 308699 NM_001270572 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 198.75-3 chr10 15809735 15809902 + 1.25 NA intron (NM_024948, intron 10 of 14) intron (NM_024948, intron 10 of 14) 50689 NM_024948 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 262.75-23 chr8 83663150 83663414 + 1.25 NA Intergenic L1M5|LINE|L1 259524 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 297.75-12 chr5 64508678 64509165 + 1.25 NA intron (NM_001029875, intron 2 of 5) intron (NM_001029875, intron 2 of 5) 2906 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 329.75-5 chr22 47413056 47413407 + 1.25 NA Intergenic L1M4|LINE|L1 67660 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 231.5-17 chr2 197656036 197656372 + 1.25 NA intron (NM_144629, intron 1 of 8) MIR|SINE|MIR 19383 NM_144629 130132 Hs.591615 NM_144629 ENSG00000162944 RFTN2 C2orf11|Raftlin-2 raftlin family member 2 protein-coding 226-7 chr12 125754257 125754543 + 1.25 NA Intergenic Intergenic 131948 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 153-97 chr9 37974241 37974410 + 1.25 NA intron (NM_003028, intron 3 of 5) intron (NM_003028, intron 3 of 5) -69972 NR_024872 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 184-40 chr4 106943272 106943503 + 1.25 NA intron (NM_014421, intron 1 of 3) intron (NM_014421, intron 1 of 3) 92926 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 395 chr10 87879689 87880091 + 1.25 NA intron (NM_001304717, intron 2 of 9) intron (NM_001304717, intron 2 of 9) 16265 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 155-79 chr5 35907992 35908133 + 1.25 NA intron (NM_001042625, intron 4 of 4) MIRb|SINE|MIR 30560 NM_001042625 133690 Hs.55150 NM_144647 ENSG00000152611 CAPSL - calcyphosine like protein-coding 384.75 chr15 65452708 65453458 + 1.25 NA intron (NM_017743, intron 15 of 17) intron (NM_017743, intron 15 of 17) -30136 NM_020962 57722 Hs.458607 NM_020962 ENSG00000103742 IGDCC4 DDM36|NOPE immunoglobulin superfamily DCC subclass member 4 protein-coding 305-6 chr4 138627360 138627796 + 1.25 NA Intergenic LTR8|LTR|ERV1 317867 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 178.25-15 chr13 79894298 79894482 + 1.25 NA intron (NR_120413, intron 1 of 5) intron (NR_120413, intron 1 of 5) 21804 NR_120413 101927195 Hs.342412 NR_120413 ENSG00000229175 LINC00382 TCONS_00021500 long intergenic non-protein coding RNA 382 ncRNA 285.25-2 chr3 109446277 109446544 + 1.25 NA intron (NR_109841, intron 2 of 4) L1M1|LINE|L1 36420 NR_109842 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 189.5-14 chr12 25351119 25351469 + 1.25 NA Intergenic L1P4|LINE|L1 -100365 NM_001369786 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 460.25 chr11 88415481 88415977 + 1.25 NA Intergenic MER5A1|DNA|hAT-Charlie -77993 NM_148170 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 391.5-7 chrUn_KI270333v1 1919 2655 + 1.25 NA NA SAR|Satellite|Satellite NA NA 238.75-21 chr3 183636425 183636711 + 1.25 NA intron (NM_001349424, intron 2 of 7) CpG-20502 945 NM_001349414 54800 Hs.407709 NM_017644 ENSG00000114796 KLHL24 DRE1|EBSSH|KRIP6 kelch like family member 24 protein-coding 169-67 chr7 108139260 108139472 + 1.25 NA Intergenic MLT1A|LTR|ERVL-MaLR -9005 NM_001318048 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 316.75 chr1 166525280 166525602 + 1.25 NA Intergenic MLT1J|LTR|ERVL-MaLR -35402 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 425 chr2 142173285 142173714 + 1.25 NA Intergenic Intergenic -41798 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 257-7 chr3 104151336 104151817 + 1.25 NA Intergenic AluSz6|SINE|Alu -627460 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 255.75-11 chr22 24359317 24359644 + 1.25 NA intron (NM_015330, intron 11 of 16) L2c|LINE|L2 17372 NM_001254733 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1|TBHS sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 252.75-16 chr2 134684946 134685480 + 1.25 NA intron (NM_030923, intron 2 of 7) intron (NM_030923, intron 2 of 7) 33787 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 263.5-15 chr20 58392455 58392890 + 1.25 NA intron (NR_036633, intron 1 of 3) intron (NR_036633, intron 1 of 3) 3443 NR_036633 9217 Hs.182625 NM_004738 ENSG00000124164 VAPB ALS8|VAMP-B|VAP-B VAMP associated protein B and C protein-coding 238.25-29 chr6 113152523 113152729 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger 280821 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 362.75 chr1 168516961 168517438 + 1.25 NA Intergenic Intergenic -21555 NR_125956 101928565 Hs.563806 NR_125956 ENSG00000228697 LOC101928565 - uncharacterized LOC101928565 ncRNA 148.75-74 chr4 172846386 172846524 + 1.25 NA intron (NM_001034845, intron 7 of 12) intron (NM_001034845, intron 7 of 12) -119577 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 303-8 chr3 174407324 174407637 + 1.25 NA Intergenic MIR|SINE|MIR -451854 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 242.75-13 chr2 19031337 19031651 + 1.25 NA Intergenic Intergenic -4523 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 186.25-49 chr5 15494895 15495151 + 1.25 NA Intergenic Intergenic -5157 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 267.25-10 chr6 47124724 47125123 + 1.25 NA Intergenic (TTTAA)n|Simple_repeat|Simple_repeat -82591 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 197.25-37 chr4 113864818 113865102 + 1.25 NA Intergenic Intergenic -103033 NM_172114 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 231.5-32 chr7 41868193 41868452 + 1.25 NA Intergenic Intergenic -165232 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 242.25-12 chr2 211571627 211571878 + 1.25 NA intron (NM_001042599, intron 19 of 26) intron (NM_001042599, intron 19 of 26) 854608 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 241.25-16 chr20 59803232 59803453 + 1.25 NA intron (NM_080672, intron 7 of 12) L1MEc|LINE|L1 82132 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 232.25-22 chr21 23632051 23632455 + 1.25 NA Intergenic L1MEc|LINE|L1 -247418 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 213.5-46 chr8 133920189 133920457 + 1.25 NA Intergenic Intergenic 33827 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 287.5-4 chr11 82268983 82269399 + 1.25 NA intron (NR_120571, intron 3 of 7) L2a|LINE|L2 134722 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 224 chr1 67511880 67512092 + 1.25 NA Intergenic AluSx3|SINE|Alu -81584 NM_001018069 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 248.75-21 chr9 36953949 36954392 + 1.25 NA intron (NR_104000, intron 6 of 9) L1MCa|LINE|L1 -60639 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 185.5-74 chr9 5391067 5391230 + 1.25 NA intron (NM_018465, intron 3 of 5) intron (NM_018465, intron 3 of 5) 46777 NM_018465 55848 Hs.584242 NM_018465 ENSG00000107020 PLGRKT AD025|C9orf46|MDS030|PLG-RKT|Plg-R(KT) plasminogen receptor with a C-terminal lysine protein-coding 190.75-14 chr11 69496799 69497046 + 1.25 NA Intergenic Intergenic 11361 NR_120544 101928292 Hs.736219 NR_120542 LINC01488 BRCAT8 long intergenic non-protein coding RNA 1488 ncRNA 146.25-13 chr10 57509718 57509973 + 1.25 NA Intergenic L1PA16|LINE|L1 -205286 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 385.25-2 chr8 33680930 33681283 + 1.25 NA Intergenic AluJr|SINE|Alu -81000 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 216.75-2 chr1 192824745 192825099 + 1.25 NA Intergenic L1MDa|LINE|L1 15883 NM_002923 5997 Hs.78944 NM_002923 ENSG00000116741 RGS2 G0S8 regulator of G protein signaling 2 protein-coding 260.75-4 chr10 100187840 100188262 + 1.25 NA TTS (NM_001320928) TTS (NM_001320928) -2022 NM_001347857 10613 Hs.150087 NM_006459 ENSG00000107566 ERLIN1 C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62 ER lipid raft associated 1 protein-coding 385-2 chr6 161642627 161643097 + 1.25 NA intron (NM_004562, intron 7 of 11) Tigger13a|DNA|TcMar-Tigger 171885 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 243-5 chr11 54863234 54863521 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr 156545 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 247.75-13 chr16 60898376 60898696 + 1.25 NA Intergenic L1ME1|LINE|L1 157230 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 249.25-15 chr5 27828352 27828647 + 1.25 NA Intergenic MLT1D|LTR|ERVL-MaLR 356207 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 170.25-55 chr4 136875091 136875340 + 1.25 NA intron (NR_149105, intron 3 of 3) L1M3|LINE|L1 -318541 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 188.75-28 chr2 18361462 18361659 + 1.25 NA Intergenic MIR|SINE|MIR 199093 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 189.5-39 chr22 28919332 28919671 + 1.25 NA intron (NM_032173, intron 1 of 8) MIRb|SINE|MIR 2112 NM_032173 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 223-16 chr21 29780525 29780858 + 1.25 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 32516 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 202-50 chr8 92655021 92655277 + 1.25 NA intron (NR_125827, intron 1 of 4) intron (NR_125827, intron 1 of 4) 345 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 243.25-2 chr1 116842167 116842496 + 1.25 NA Intergenic Intergenic -67585 NM_020440 5738 Hs.418093 NM_020440 ENSG00000134247 PTGFRN CD315|CD9P-1|EWI-F|FPRP|SMAP-6 prostaglandin F2 receptor inhibitor protein-coding 277.5-11 chr20 10126117 10126356 + 1.25 NA intron (NR_040710, intron 2 of 4) THE1-int|LTR|ERVL-MaLR 91249 NM_022096 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 402.5 chr2 95230331 95230767 + 1.25 NA Intergenic L1ME3|LINE|L1 -43900 NM_001165977 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 328 chr1 158837316 158837731 + 1.25 NA intron (NM_002432, intron 1 of 6) L1MB2|LINE|L1 6172 NM_002432 4332 Hs.153837 NM_002432 ENSG00000163563 MNDA PYHIN3 myeloid cell nuclear differentiation antigen protein-coding 351.75-5 chr15 42031271 42031574 + 1.25 NA intron (NM_001206670, intron 1 of 19) intron (NM_001206670, intron 1 of 19) 19281 NM_001206670 123745 Hs.668060 NM_001080490 ENSG00000188089 PLA2G4E - phospholipase A2 group IVE protein-coding 178-68 chr8 31757827 31758123 + 1.25 NA intron (NM_013962, intron 1 of 4) L1ME2|LINE|L1 118223 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 285-7 chr6 164972183 164972512 + 1.25 NA Intergenic Intergenic -150284 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 230.75-30 chr4 100734043 100734488 + 1.25 NA Intergenic L1M7|LINE|L1 -59152 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 239-14 chr5 59957883 59958265 + 1.25 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -64348 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 336 chr12 2925720 2926256 + 1.25 NA intron (NM_003324, intron 4 of 10) intron (NM_003324, intron 4 of 10) -33409 NM_003213 7004 Hs.94865 NM_003213 ENSG00000197905 TEAD4 EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B TEA domain transcription factor 4 protein-coding 294-3 chr4 62961740 62962082 + 1.25 NA Intergenic Intergenic -800146 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 212.25-11 chr11 111295850 111296176 + 1.25 NA 3' UTR (NM_001302646, exon 2 of 2) 3' UTR (NM_001302646, exon 2 of 2) -2533 NM_001271458 120376 Hs.31409 NM_001136105 ENSG00000214290 COLCA2 C11orf93|CASC13|LOH11CR1G colorectal cancer associated 2 protein-coding 182.25-66 chr8 87986789 87986946 + 1.25 NA Intergenic Intergenic -112852 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 261-10 chr17 39179947 39180257 + 1.25 NA intron (NM_199248, intron 11 of 12) AluSq|SINE|Alu -13941 NM_001143968 390790 Hs.568007 NM_001143968 ENSG00000141748 ARL5C ARL12 ADP ribosylation factor like GTPase 5C protein-coding 221.5-42 chr5 31460046 31460395 + 1.25 NA intron (NM_013235, intron 19 of 34) intron (NM_013235, intron 19 of 34) 71873 NM_013235 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 207-47 chr6 150477981 150478288 + 1.25 NA Intergenic L1P4|LINE|L1 109122 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 166.5-92 chr8 125865854 125866085 + 1.25 NA Intergenic L1MA9|LINE|L1 85228 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 206.75-25 chr2 141666479 141666721 + 1.25 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 465101 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 328-2 chr10 113046913 113047333 + 1.25 NA intron (NM_001198528, intron 4 of 14) L1ME4a|LINE|L1 1768 NR_132769 106635520 NR_132769 SNORA87 - small nucleolar RNA, H/ACA box 87 snoRNA 259-7 chr3 35539343 35539592 + 1.25 NA Intergenic Intergenic -100058 NM_001267616 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 312.75-6 chr9 99774086 99774790 + 1.25 NA intron (NR_109802, intron 2 of 6) intron (NR_109802, intron 2 of 6) 45451 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 210-49 chr6 126918575 126918846 + 1.25 NA Intergenic L3|LINE|CR1 -199961 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 268.25-8 chr15 57020217 57020493 + 1.25 NA intron (NM_001322164, intron 3 of 19) intron (NM_001322164, intron 3 of 19) 100910 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 345.25-6 chr7 99957404 99958113 + 1.25 NA Intergenic SATR1|Satellite|Satellite 18273 NM_001185 563 Hs.546239 NM_001185 ENSG00000160862 AZGP1 ZA2G|ZAG alpha-2-glycoprotein 1, zinc-binding protein-coding 171-24 chr16 9529240 9529462 + 1.25 NA Intergenic Intergenic -73846 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 210.25-27 chr3 35851539 35851776 + 1.25 NA Intergenic L1MB1|LINE|L1 107181 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 368.5-4 chr8 65862707 65863203 + 1.25 NA Intergenic Intergenic -20891 NM_001242318 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 203.5-2 chr1 66668229 66668612 + 1.25 NA intron (NM_001350218, intron 8 of 22) AluSc8|SINE|Alu 39980 NR_036060 100422871 NR_036060 ENSG00000264720 MIR3117 mir-3117 microRNA 3117 ncRNA 308.75-6 chr13 73427076 73427446 + 1.25 NA Intergenic Intergenic -136983 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 391-3 chr9 128915238 128915747 + 1.25 NA intron (NM_001127245, intron 2 of 2) AluY|SINE|Alu -5490 NM_174933 254295 Hs.709447 NM_174933 ENSG00000175287 PHYHD1 - phytanoyl-CoA dioxygenase domain containing 1 protein-coding 205.25-16 chr17 62603758 62604016 + 1.25 NA intron (NM_001284363, intron 17 of 19) intron (NM_001284363, intron 17 of 19) -23783 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 219-10 chr2 141853617 141853831 + 1.25 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 277977 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 485-2 chr14 57807007 57807579 + 1.25 NA intron (NR_159373, intron 1 of 10) intron (NR_159373, intron 1 of 10) 57706 NM_001352013 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 211.75-31 chr5 40200512 40200918 + 1.25 NA Intergenic MIRb|SINE|MIR 148424 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 225-21 chr7 1148244 1148516 + 1.25 NA TTS (NM_001365383) TTS (NM_001365383) -10123 NM_001350970 84310 Hs.653258 NM_032350 ENSG00000146540 C7orf50 YCR016W chromosome 7 open reading frame 50 protein-coding 241.5-11 chr2 17430299 17430540 + 1.25 NA Intergenic Intergenic 88021 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 305.5-10 chr9 33470134 33470561 + 1.25 NA intron (NM_139235, intron 3 of 15) L2a|LINE|L2 -2412 NR_106910 102465512 NR_106910 ENSG00000275651 MIR6851 hsa-mir-6851 microRNA 6851 ncRNA 254.75-26 chr8 88808304 88808536 + 1.25 NA Intergenic Intergenic -480937 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 323.5 chr1 70705351 70705638 + 1.25 NA promoter-TSS (NR_125938) promoter-TSS (NR_125938) -959 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 295-2 chr18 38626745 38627002 + 1.25 NA Intergenic Intergenic 969738 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 188.25-4 chr1 194789499 194789855 + 1.25 NA Intergenic L1MCc|LINE|L1 1299038 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 208.25-17 chr13 86439534 86439759 + 1.25 NA Intergenic MER39B|LTR|ERV1 -472274 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 286.5-5 chr14 55932303 55932595 + 1.25 NA Intergenic L1MEd|LINE|L1 -135775 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 431.25-2 chr15 36640694 36641213 + 1.25 NA intron (NM_032499, intron 2 of 11) intron (NM_032499, intron 2 of 11) 46076 NM_001290232 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 279.75-13 chr5 39166513 39166790 + 1.25 NA intron (NM_001243093, intron 2 of 18) L1PB4|LINE|L1 52912 NM_001465 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 286.75 chr10 46196804 46197095 + 1.25 NA Intergenic L1MB4|LINE|L1 72659 NR_103828 100996567 Hs.546758 NR_103827 ANTXRLP1 - ANTXR like pseudogene 1 pseudo 209-33 chr4 45739534 45739873 + 1.25 NA Intergenic L1PREC2|LINE|L1 384351 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 419.5-3 chr2 197846978 197847431 + 1.25 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 42611 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 400-4 chr8 99649836 99650597 + 1.25 NA intron (NM_017890, intron 34 of 61) intron (NM_017890, intron 34 of 61) -113355 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 793 chr11 14160405 14161283 + 1.25 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 197641 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 356 chr15 57649449 57650140 + 1.25 NA intron (NR_104367, intron 11 of 15) intron (NR_104367, intron 11 of 15) -56727 NM_001018102 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 273.75-13 chrX 114621739 114622138 + 1.25 NA intron (NM_001256761, intron 2 of 5) intron (NM_001256761, intron 2 of 5) -8859 NR_002993 677816 Hs.693123 NR_002993 ENSG00000208839 SNORA35 HBI-36|SNORA35A small nucleolar RNA, H/ACA box 35 snoRNA 176.25-65 chr8 87198407 87198681 + 1.25 NA intron (NM_173538, intron 4 of 10) L1M4|LINE|L1 332129 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 240-14 chr2 79034211 79034493 + 1.25 NA Intergenic L1MCb|LINE|L1 8650 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 332.5-6 chr8 89724223 89724626 + 1.25 NA intron (NR_125822, intron 3 of 4) intron (NR_125822, intron 3 of 4) 33287 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 426 chr14 64065099 64065506 + 1.25 NA intron (NM_015180, intron 50 of 114) intron (NM_015180, intron 50 of 114) 29823 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 211.25-35 chr5 32507227 32507530 + 1.25 NA Intergenic MER5A|DNA|hAT-Charlie -62638 NR_144318 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 150.75-56 chr22 28470662 28470810 + 1.25 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 10867 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 341.5-2 chr11 100032851 100033356 + 1.25 NA intron (NM_001243270, intron 8 of 23) intron (NM_001243270, intron 8 of 23) 476958 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 235.5-40 chr8 120422148 120422465 + 1.25 NA intron (NM_014078, intron 4 of 6) intron (NM_014078, intron 4 of 6) 22844 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 311.25-2 chr11 80934636 80935044 + 1.25 NA Intergenic Intergenic -172037 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 344.5-4 chr14 72367621 72367986 + 1.25 NA intron (NM_001370288, intron 3 of 16) MIR3|SINE|MIR -149017 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 193 chr1 8023073 8023317 + 1.25 NA intron (NM_018948, intron 1 of 3) intron (NM_018948, intron 1 of 3) 3114 NM_018948 54206 Hs.605445 NM_018948 ENSG00000116285 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 219-18 chr5 17964761 17965133 + 1.25 NA Intergenic (TC)n|Simple_repeat|Simple_repeat 157673 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 343.25 chr1 41601754 41602267 + 1.25 NA intron (NM_024503, intron 3 of 8) L1M3|LINE|L1 -117327 NR_126098 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 403.25 chr11 77849545 77850075 + 1.25 NA intron (NM_001316962, intron 3 of 4) L2c|LINE|L2 8672 NM_001363564 28971 Hs.745040 NM_024684 ENSG00000087884 AAMDC C11orf67|CK067|PTD015 adipogenesis associated Mth938 domain containing protein-coding 366.25-5 chr2 103760346 103760670 + 1.25 NA Intergenic L1M4b|LINE|L1 647824 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 181.5-77 chr9 108865247 108865429 + 1.25 NA Intergenic Intergenic 3072 NM_006687 10881 Hs.123530 NM_006687 ENSG00000187003 ACTL7A - actin like 7A protein-coding 232-26 chr7 126350595 126351028 + 1.25 NA Intergenic Intergenic 707373 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 232-17 chr20 53525289 53525576 + 1.25 NA Intergenic Intergenic -27338 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 243-21 chr8 82778886 82779172 + 1.25 NA Intergenic L1ME1|LINE|L1 -133075 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 217.5-19 chr15 100603582 100603862 + 1.25 NA intron (NM_198243, intron 2 of 5) intron (NM_198243, intron 2 of 5) 1133 NM_198243 140460 Hs.31845 NM_024708 ENSG00000183475 ASB7 - ankyrin repeat and SOCS box containing 7 protein-coding 263.25-3 chr11 13425831 13426062 + 1.25 NA intron (NM_001297741, intron 1 of 7) L1ME1|LINE|L1 14333 NM_001297742 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 249-16 chr8 92590428 92590638 + 1.25 NA intron (NR_125827, intron 3 of 4) intron (NR_125827, intron 3 of 4) 64961 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 246.5-28 chr8 98726962 98727605 + 1.25 NA intron (NM_006281, intron 4 of 10) MLT1K|LTR|ERVL-MaLR 98388 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 216-14 chr12 47367542 47367760 + 1.25 NA Intergenic LTR54B|LTR|ERV1 -3382 NR_039715 100616478 NR_039715 ENSG00000264906 MIR4494 - microRNA 4494 ncRNA 372.75-2 chr5 123824153 123824545 + 1.25 NA Intergenic L1MA4A|LINE|L1 278932 NM_001270572 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 330-6 chr4 62450812 62451189 + 1.25 NA Intergenic Intergenic -289235 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 273.75-5 chr16 81358758 81359106 + 1.25 NA intron (NM_022041, intron 5 of 10) intron (NM_022041, intron 5 of 10) -26086 NR_039871 100616150 NR_039871 ENSG00000284473 MIR4720 - microRNA 4720 ncRNA 268.25-6 chr14 58174705 58175131 + 1.25 NA Intergenic Intergenic -22705 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 212-26 chr4 44580361 44580617 + 1.25 NA Intergenic Intergenic 71152 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 287-9 chr9 29953663 29954038 + 1.25 NA Intergenic L1MCa|LINE|L1 454604 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 396.5 chr10 32653137 32653864 + 1.25 NA intron (NM_001321115, intron 21 of 43) L1M1|LINE|L1 207360 NR_109826 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 278.25-12 chr5 38512009 38512316 + 1.25 NA intron (NM_001127671, intron 5 of 19) intron (NM_001127671, intron 5 of 19) 44484 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 177.25-18 chr12 127291639 127291813 + 1.25 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -7443 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 186.25-33 chr22 45619798 45620070 + 1.25 NA Intergenic L1ME3|LINE|L1 -14287 NR_131244 100506737 Hs.517692 NR_131244 ENSG00000238120 LINC01589 TCONS_00029353 long intergenic non-protein coding RNA 1589 ncRNA 280.75-6 chr2 41363804 41364053 + 1.25 NA Intergenic Intergenic -513627 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 180.25-16 chr13 61759594 61759794 + 1.25 NA Intergenic Charlie2b|DNA|hAT-Charlie 269854 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 319-5 chr6 48369333 48369730 + 1.25 NA Intergenic Tigger5b|DNA|TcMar-Tigger -300842 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 227-14 chr3 142054480 142054740 + 1.25 NA intron (NM_001178138, intron 3 of 13) intron (NM_001178138, intron 3 of 13) -25984 NM_001178141 7029 Hs.379018 NM_006286 ENSG00000114126 TFDP2 DP2 transcription factor Dp-2 protein-coding 318.25-2 chr1 222132097 222132478 + 1.25 NA Intergenic L1MEd|LINE|L1 -153767 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 212.5-2 chr1 237026528 237026821 + 1.25 NA Intergenic Intergenic -15510 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 236.5-32 chr6 94243949 94244216 + 1.25 NA Intergenic Intergenic 525779 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 272.75-9 chr2 73895721 73896242 + 1.25 NA intron (NM_001615, intron 1 of 8) MER58B|DNA|hAT-Charlie 2973 NM_001615 72 Hs.516105 NM_001615 ENSG00000163017 ACTG2 ACT|ACTA3|ACTE|ACTL3|ACTSG|VSCM actin gamma 2, smooth muscle protein-coding 288.25-7 chr3 86211602 86211962 + 1.25 NA Intergenic Intergenic -270161 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 328.75 chr2 27863848 27864138 + 1.25 NA intron (NM_022128, intron 1 of 7) intron (NM_022128, intron 1 of 7) -24716 NM_001329112 9577 Hs.258314 NM_004899 ENSG00000158019 BABAM2 BRCC4|BRCC45|BRE BRISC and BRCA1 A complex member 2 protein-coding 295.5 chr1 98556209 98556591 + 1.25 NA Intergenic Intergenic -105321 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 162.25-103 chr9 113205184 113205424 + 1.25 NA intron (NM_015258, intron 4 of 27) L1MB4|LINE|L1 15973 NM_015258 23307 Hs.522351 NM_015258 ENSG00000119321 FKBP15 FKBP133|KIAA0674|PPP1R76 FKBP prolyl isomerase 15 protein-coding 699.5 chr20 28494688 28495909 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr 107367 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 335-6 chr6 146713334 146713942 + 1.25 NA intron (NM_024694, intron 13 of 35) L1MB2|LINE|L1 90186 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 355.5-6 chrX 55053819 55054324 + 1.25 NA Intergenic AluSc8|SINE|Alu -20959 NM_001015038 389860 Hs.293317 NM_001015038 ENSG00000238269 PAGE2B CT16.5|GAGEE3|PAGE-2B PAGE family member 2B protein-coding 291-3 chr17 61866831 61867191 + 1.25 NA 3' UTR (NM_020748, exon 25 of 25) 3' UTR (NM_020748, exon 25 of 25) -3452 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 227.5-15 chr3 130687182 130687455 + 1.25 NA intron (NM_014602, intron 14 of 19) Tigger4b|DNA|TcMar-Tigger 59511 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 254.5-26 chr6 141543317 141543574 + 1.25 NA Intergenic Intergenic 545354 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 300.5-2 chr10 116015594 116016115 + 1.25 NA Intergenic Intergenic 178935 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 383 chr2 164649600 164650241 + 1.25 NA Intergenic L1MB3|LINE|L1 -28438 NM_004490 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 258.75-10 chr16 80869865 80870276 + 1.25 NA intron (NR_131948, intron 1 of 2) L1MD2|LINE|L1 22526 NR_131948 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 304-5 chr8 46363275 46363680 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr 254166 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 301-4 chr19 27899474 27899853 + 1.25 NA intron (NR_146734, intron 1 of 7) intron (NR_146734, intron 1 of 7) -105723 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 313.25-4 chr2 72559107 72559687 + 1.25 NA intron (NR_135774, intron 8 of 19) intron (NR_135774, intron 8 of 19) 266636 NM_001321730 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 327.5-4 chr14 79906524 79906823 + 1.25 NA Intergenic Intergenic -304746 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 235.75-13 chr15 82853021 82853315 + 1.25 NA intron (NM_004839, intron 6 of 8) intron (NM_004839, intron 6 of 8) 43540 NM_001080435 123720 Hs.377360 NM_001080435 ENSG00000156232 WHAMM WHAMM1|WHDC1 WASP homolog associated with actin, golgi membranes and microtubules protein-coding 345.25-5 chr3 108289305 108289971 + 1.25 NA Intergenic Intergenic -6852 NM_001282559 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 248.75-17 chr6 49253596 49253852 + 1.25 NA Intergenic Intergenic 209529 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 331.5-12 chr8 129485083 129485776 + 1.25 NA intron (NR_130917, intron 1 of 3) (TA)n|Simple_repeat|Simple_repeat -1287 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 216.5-12 chr15 27839554 27839791 + 1.25 NA intron (NM_001300984, intron 22 of 22) L1MD1|LINE|L1 259643 NM_000275 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 265.75-7 chr18 70260105 70260348 + 1.25 NA Intergenic Intergenic -28819 NM_004232 9306 Hs.44439 NM_004232 ENSG00000170677 SOCS6 CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4 suppressor of cytokine signaling 6 protein-coding 408-2 chr1 175217352 175217902 + 1.25 NA Intergenic Intergenic -24640 NM_001319230 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 184.5-62 chr5 89649961 89650195 + 1.25 NA Intergenic Intergenic 366642 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 217.25-7 chr1 220052394 220052670 + 1.25 NA Intergenic L2|LINE|L2 -6027 NM_004446 2058 Hs.497788 NM_004446 ENSG00000136628 EPRS EARS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS glutamyl-prolyl-tRNA synthetase protein-coding 200.75-29 chr2 134361538 134361820 + 1.25 NA intron (NM_001371457, intron 10 of 16) intron (NM_001371457, intron 10 of 16) 107607 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 245-15 chr4 32659083 32659381 + 1.25 NA Intergenic Intergenic 308194 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 237.5-28 chr5 58491311 58491725 + 1.25 NA promoter-TSS (NM_001304431) promoter-TSS (NM_001304431) 83 NM_001304429 202309 Hs.547697 NM_152687 ENSG00000175857 GAPT C5orf29 GRB2 binding adaptor protein, transmembrane protein-coding 217.75-20 chr2 117490376 117490605 + 1.25 NA Intergenic Intergenic -324201 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 317.75-7 chr7 29392939 29393596 + 1.25 NA intron (NM_001293072, intron 3 of 12) intron (NM_001293072, intron 3 of 12) -86445 NM_001293075 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 349.75 chr1 113673320 113673742 + 1.25 NA intron (NM_001142782, intron 19 of 20) intron (NM_001142782, intron 19 of 20) 85624 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 258.5-2 chr11 81522799 81523199 + 1.25 NA Intergenic (TGTA)n|Simple_repeat|Simple_repeat 367837 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 313.5-10 chr8 133306706 133306966 + 1.25 NA Intergenic Intergenic -9532 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 219.25-12 chr14 61795320 61795588 + 1.25 NA 3' UTR (NM_003082, exon 10 of 10) 3' UTR (NM_003082, exon 10 of 10) -16708 NM_001367650 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 269.25-10 chr18 68967277 68967714 + 1.25 NA intron (NM_001093729, intron 8 of 9) intron (NM_001093729, intron 8 of 9) 169415 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 236-20 chr2 116697696 116698165 + 1.25 NA Intergenic Intergenic -1116761 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 334.75-2 chr10 9165190 9165649 + 1.25 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -110194 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 322.25-7 chr8 95352835 95353124 + 1.25 NA intron (NR_038209, intron 2 of 3) intron (NR_038209, intron 2 of 3) -83778 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 364.75-7 chr8 137167415 137167837 + 1.25 NA Intergenic Intergenic 245962 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 320.25-5 chr4 90527766 90528105 + 1.25 NA intron (NM_207491, intron 5 of 7) intron (NM_207491, intron 5 of 7) 292904 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 192.25-3 chr1 98121608 98121795 + 1.25 NA Intergenic Intergenic -72008 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene ncRNA 337-3 chr5 108392713 108393123 + 1.25 NA Intergenic L1MC4|LINE|L1 -10820 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 273.5-11 chr4 57025570 57025952 + 1.25 NA intron (NM_001303269, intron 24 of 25) AluJr|SINE|Alu 46865 NM_000938 5431 Hs.602757 NM_000938 ENSG00000047315 POLR2B POL2RB|RPB2|hRPB140 RNA polymerase II subunit B protein-coding 159-57 chr3 117767454 117767717 + 1.25 NA Intergenic Intergenic -76660 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 169.25-40 chr4 61043833 61044111 + 1.25 NA Intergenic MSTA|LTR|ERVL-MaLR -99684 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 149.25-105 chr8 29799049 29799225 + 1.25 NA TTS (NR_125814) TTS (NR_125814) 29367 NR_125817 101929470 Hs.204721 NR_125817 ENSG00000248964 LOC101929470 - uncharacterized LOC101929470 ncRNA 459 chr20 41458245 41458772 + 1.25 NA intron (NM_032221, intron 17 of 36) L1MC4|LINE|L1 -91690 NM_052846 90187 Hs.726525 NM_052846 ENSG00000183798 EMILIN3 C20orf130|EMILIN5|dJ620E11.4 elastin microfibril interfacer 3 protein-coding 253.75-21 chr5 19450500 19450714 + 1.25 NA Intergenic Intergenic 435665 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 293-11 chr8 113299088 113299485 + 1.25 NA intron (NM_001363185, intron 2 of 66) intron (NM_001363185, intron 2 of 66) 77866 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 350.5-5 chr3 101065446 101065871 + 1.25 NA Intergenic MIRb|SINE|MIR -72168 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 171.75-78 chr7 49846722 49846879 + 1.25 NA intron (NR_136188, intron 2 of 3) intron (NR_136188, intron 2 of 3) 71467 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 169-51 chr5 51206385 51206578 + 1.25 NA Intergenic Intergenic 176851 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 366.5-2 chr14 98279924 98280320 + 1.25 NA Intergenic L1ME4b|LINE|L1 -301998 NR_152746 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 254.5-28 chr7 86516302 86516701 + 1.25 NA Intergenic Intergenic -127408 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 440.75-2 chr22 43655554 43656105 + 1.25 NA intron (NM_198856, intron 15 of 29) L1MEg|LINE|L1 139575 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 248.25-21 chr8 139438366 139438608 + 1.25 NA Intergenic L1M4|LINE|L1 264636 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 316.25-3 chr11 99726422 99726989 + 1.25 NA intron (NM_175566, intron 1 of 21) MIR|SINE|MIR 170560 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 210.75-32 chr3 115727159 115727531 + 1.25 NA Intergenic Intergenic 103835 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 229.5-35 chr6 116308986 116309298 + 1.25 NA intron (NR_136524, intron 1 of 4) intron (NR_136524, intron 1 of 4) -29025 NM_003309 7259 Hs.458358 NM_003309 ENSG00000189241 TSPYL1 TSPYL TSPY like 1 protein-coding 342.25-8 chr8 137768221 137768728 + 1.25 NA Intergenic Intergenic 315071 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 200.5-16 chr12 21720070 21720459 + 1.25 NA Intergenic Intergenic 54442 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 382.25-4 chr4 134803751 134804182 + 1.25 NA Intergenic L4_B_Mam|LINE|RTE-X 319593 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 330.5-13 chr7 47517954 47518331 + 1.25 NA intron (NM_022748, intron 2 of 30) intron (NM_022748, intron 2 of 30) -53339 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 254.75-13 chr2 129688014 129688411 + 1.25 NA Intergenic L1MDa|LINE|L1 189279 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 328.75-5 chr8 129080200 129080752 + 1.25 NA Intergenic Intergenic -114475 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 316.75-5 chr14 68649648 68650012 + 1.25 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) -21043 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 234.5-13 chr2 29436014 29436376 + 1.25 NA intron (NM_004304, intron 4 of 28) L2a|LINE|L2 39182 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 358 chr1 147515318 147515753 + 1.25 NA non-coding (NR_038423, exon 2 of 4) non-coding (NR_038423, exon 2 of 4) 2340 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 228.75-15 chr22 34724761 34725125 + 1.25 NA Intergenic L1MA10|LINE|L1 272973 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 219.75-4 chr1 169631810 169632189 + 1.25 NA Intergenic Intergenic -1875 NM_003005 6403 Hs.73800 NM_003005 ENSG00000174175 SELP CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL selectin P protein-coding 257-4 chr11 12624444 12624772 + 1.25 NA Intergenic L1MB7|LINE|L1 -49813 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 197-31 chr4 84016366 84016747 + 1.25 NA intron (NR_125909, intron 7 of 8) MLT1J|LTR|ERVL-MaLR 282613 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 210.25-31 chr4 186082534 186082736 + 1.25 NA exon (NM_003265, exon 4 of 5) exon (NM_003265, exon 4 of 5) 13480 NM_003265 7098 Hs.657724 NM_003265 ENSG00000164342 TLR3 CD283|IIAE2 toll like receptor 3 protein-coding 367.75-4 chr4 28723677 28724090 + 1.25 NA Intergenic Intergenic -95699 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 147-31 chr15 77733499 77733675 + 1.25 NA intron (NM_001301192, intron 2 of 4) intron (NM_001301192, intron 2 of 4) -12836 NM_001301197 84894 Hs.656765 NM_032808 ENSG00000169783 LINGO1 LERN1|LRRN6A|MRT64|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 372-2 chr2 44185692 44186111 + 1.25 NA intron (NM_177969, intron 1 of 4) intron (NM_177969, intron 1 of 4) 17026 NM_002706 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 191.75-41 chr3 109279342 109279605 + 1.25 NA Intergenic Intergenic 37044 NM_138815 151871 Hs.351113 NM_138815 ENSG00000163530 DPPA2 CT100|ECAT15-2|PESCRG1 developmental pluripotency associated 2 protein-coding 463 chr3 111169842 111170314 + 1.25 NA intron (NM_001243288, intron 7 of 8) intron (NM_001243288, intron 7 of 8) 98262 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 337.5-4 chr2 46808351 46809030 + 1.25 NA Intergenic L1ME3B|LINE|L1 -7978 NR_034099 388948 Hs.728895 NR_034099 ENSG00000222005 LINC01118 - long intergenic non-protein coding RNA 1118 ncRNA 273.25-6 chr10 107800409 107800760 + 1.25 NA Intergenic Intergenic 268709 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 177-31 chr2 184287131 184287350 + 1.25 NA Intergenic Intergenic -91735 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 171.75-40 chr2 48296441 48296627 + 1.25 NA Intergenic Intergenic -18148 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 269.25-14 chr5 35671460 35671771 + 1.25 NA TTS (NM_144722) TTS (NM_144722) 53752 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 249-18 chr8 111060619 111060876 + 1.25 NA Intergenic Intergenic -33314 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 365-4 chr7 52565277 52565626 + 1.25 NA Intergenic Intergenic -470182 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 344.75 chr14 84913335 84913685 + 1.25 NA Intergenic MER57A-int|LTR|ERV1 -358422 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 283.25-5 chr20 55198519 55198779 + 1.25 NA Intergenic L1ME2z|LINE|L1 -224394 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 231-14 chr3 8489597 8490063 + 1.25 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 11828 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 261.5-22 chr5 147649905 147650263 + 1.25 NA intron (NM_001282282, intron 3 of 20) intron (NM_001282282, intron 3 of 20) 90090 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 258.75-6 chr12 127996227 127996612 + 1.25 NA Intergenic L1ME3|LINE|L1 -12528 NR_126452 104472718 Hs.628661 NR_126452 LINC00508 - long intergenic non-protein coding RNA 508 ncRNA 219.75-8 chr10 80302161 80302429 + 1.25 NA Intergenic L1M4|LINE|L1 -12637 NM_000429 4143 Hs.282670 NM_000429 ENSG00000151224 MAT1A MAT|MATA1|SAMS|SAMS1 methionine adenosyltransferase 1A protein-coding 358.25-2 chr5 36921541 36921934 + 1.25 NA intron (NM_015384, intron 1 of 45) UCON33|DNA|TcMar-Tigger 44968 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 206.75-47 chr5 116926687 116926870 + 1.25 NA Intergenic Intergenic -164569 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 247.75-10 chr14 68121932 68122197 + 1.25 NA intron (NM_133509, intron 7 of 10) L1M5|LINE|L1 298472 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 228.75-13 chr2 222826698 222827091 + 1.25 NA Intergenic Intergenic -34142 NM_001354158 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 300.5-5 chr13 44072084 44072502 + 1.25 NA Intergenic L1MEc|LINE|L1 -38256 NR_104065 101929212 Hs.534877 NR_104064 ENSG00000227258 SMIM2-AS1 C13orf44-AS1|C3orf81-AS1 SMIM2 antisense RNA 1 ncRNA 281-9 chr4 176569408 176569858 + 1.25 NA Intergenic Intergenic 223289 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|LMPHM4|VRP vascular endothelial growth factor C protein-coding 210-15 chr15 94274133 94274553 + 1.25 NA Intergenic L1M5|LINE|L1 -23858 NM_018349 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 205.5-3 chr10 32810670 32810935 + 1.25 NA intron (NM_001321115, intron 31 of 43) L1M2b|LINE|L1 90670 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 288.5-19 chr8 15347068 15347531 + 1.25 NA Intergenic L1ME3A|LINE|L1 -108868 NM_001322879 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 191.5-56 chr6 153016436 153016719 + 1.25 NA intron (NM_012419, intron 4 of 4) intron (NM_012419, intron 4 of 4) -13762 NM_001301872 54516 Hs.225836 NM_019041 ENSG00000112031 MTRF1L HMRF1L|MRF1L|mtRF1a mitochondrial translational release factor 1 like protein-coding 262.5-15 chr4 84732530 84732808 + 1.25 NA intron (NM_014991, intron 44 of 67) L1MA7|LINE|L1 149542 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 329.5-6 chr3 163441286 163441602 + 1.25 NA Intergenic Intergenic -138143 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 268.75-4 chr12 50200641 50201087 + 1.25 NA exon (NM_001113547, exon 4 of 8) exon (NM_001113547, exon 4 of 8) 669 NM_001243775 51474 Hs.525419 NM_016357 ENSG00000050405 LIMA1 EPLIN|LDLCQ8|SREBP3 LIM domain and actin binding 1 protein-coding 238.25-28 chr6 112477471 112477759 + 1.25 NA Intergenic Intergenic 130285 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 276.25-10 chr5 166076581 166076953 + 1.25 NA Intergenic Intergenic 849603 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 224.75-45 chr8 110706369 110706628 + 1.25 NA Intergenic Intergenic 320935 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 158.75-44 chr2 181177617 181177776 + 1.25 NA intron (NR_130784, intron 1 of 4) intron (NR_130784, intron 1 of 4) 53859 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 317.5-9 chr7 94202762 94203243 + 1.25 NA Intergenic L1M4|LINE|L1 189190 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 369.5-3 chr7 110741320 110741900 + 1.25 NA intron (NM_001350963, intron 5 of 5) MLT1A1|LTR|ERVL-MaLR -349396 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 369-3 chrX 25407516 25408064 + 1.25 NA Intergenic Intergenic -391825 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 323.5-5 chr2 68297924 68298505 + 1.25 NA intron (NM_015463, intron 2 of 2) intron (NM_015463, intron 2 of 2) 21837 NM_015463 25927 Hs.212885 NM_015463 ENSG00000119865 CNRIP1 C2orf32|CRIP1 cannabinoid receptor interacting protein 1 protein-coding 366.75-2 chr2 117585610 117586002 + 1.25 NA Intergenic L1MA7|LINE|L1 -228885 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 261.25-4 chr16 23219046 23219332 + 1.25 NA Intergenic AluJb|SINE|Alu 36444 NM_001039 6340 Hs.371727 NM_001039 ENSG00000166828 SCNN1G BESC3|ENaCg|ENaCgamma|LDLS2|PHA1|SCNEG sodium channel epithelial 1 gamma subunit protein-coding 177.75-74 chr8 88875179 88875426 + 1.25 NA Intergenic MamRTE1|LINE|RTE-BovB -547819 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 257.25-10 chr13 77564603 77564972 + 1.25 NA intron (NM_003843, intron 5 of 31) intron (NM_003843, intron 5 of 31) 29081 NM_144777 8796 Hs.534699 NM_003843 ENSG00000136155 SCEL - sciellin protein-coding 182-33 chr2 225090778 225091016 + 1.25 NA Intergenic Intergenic -48429 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 271.25-10 chr20 48383292 48383597 + 1.25 NA Intergenic Intergenic 23533 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 357.75-2 chr18 76677104 76677473 + 1.25 NA Intergenic L1MB8|LINE|L1 -12741 NR_122073 400661 Hs.514963 NR_122073 ENSG00000276397 LINC01879 - long intergenic non-protein coding RNA 1879 ncRNA 218.25-29 chr4 98257042 98257257 + 1.25 NA Intergenic AluY|SINE|Alu -4235 NM_001100429 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 152-21 chr14 65672850 65673068 + 1.25 NA intron (NR_038167, intron 7 of 8) intron (NR_038167, intron 7 of 8) 201857 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 413.25 chr11 109687007 109687470 + 1.25 NA Intergenic Intergenic 265048 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 163.75-81 chrX 110110075 110110310 + 1.25 NA intron (NM_001353850, intron 4 of 7) MIRc|SINE|MIR 28074 NR_039774 100616491 NR_039774 ENSG00000265584 MIR3978 - microRNA 3978 ncRNA 305-3 chr16 56331547 56331883 + 1.25 NA intron (NM_138736, intron 4 of 7) L2a|LINE|L2 86195 NR_037499 100500891 NR_037499 ENSG00000265281 MIR3935 - microRNA 3935 ncRNA 274.75-2 chr1 96910475 96910719 + 1.25 NA Intergenic MLT1K|LTR|ERVL-MaLR -185326 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 350 chr6 165046004 165046379 + 1.25 NA Intergenic L1P4|LINE|L1 -224128 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 229.25-18 chr22 24717689 24717947 + 1.25 NA Intergenic Intergenic -46683 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 312-2 chr5 13168746 13169198 + 1.25 NA Intergenic MIR|SINE|MIR -136086 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 220-35 chr9 25737530 25737918 + 1.25 NA Intergenic Intergenic -42332 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 312.75-5 chr7 86430179 86430617 + 1.25 NA Intergenic L2c|LINE|L2 -213511 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 252.75-9 chr16 87387770 87388020 + 1.25 NA intron (NM_001282683, intron 2 of 9) intron (NM_001282683, intron 2 of 9) -4119 NM_024735 79791 Hs.567582 NM_024735 ENSG00000103264 FBXO31 FBX14|FBXO14|Fbx31|MRT45|pp2386 F-box protein 31 protein-coding 268.75-9 chr3 130996239 130996678 + 1.25 NA intron (NM_001001485, intron 23 of 27) intron (NM_001001485, intron 23 of 27) 30396 NM_001288950 28990 Hs.100878 NM_014065 ENSG00000034533 ASTE1 HT001 asteroid homolog 1 protein-coding 251.25-20 chr21 34585030 34585375 + 1.25 NA intron (NM_004414, intron 1 of 3) intron (NM_004414, intron 1 of 3) 28641 NM_001285389 1827 Hs.282326 NM_004414 ENSG00000159200 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 288.75-10 chr5 130257206 130257663 + 1.25 NA Intergenic L1MA4|LINE|L1 352969 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 354.5-3 chr2 213748215 213748915 + 1.25 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -9502 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 307.5-9 chr5 176321128 176321412 + 1.25 NA intron (NM_001308200, intron 2 of 6) L1ME3F|LINE|L1 8125 NM_001308200 375484 Hs.719847 NM_198567 ENSG00000170085 SIMC1 C5orf25|OOMA1|PLEIAD SUMO interacting motifs containing 1 protein-coding 414 chr6 55593645 55594152 + 1.25 NA Intergenic MIR|SINE|MIR -14684 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 287.5-11 chr2 39835869 39836248 + 1.25 NA Intergenic L1PA15-16|LINE|L1 -56782 NM_001321479 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 162-49 chr3 163936148 163936291 + 1.25 NA Intergenic Intergenic 235337 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 293-5 chr2 45328355 45328742 + 1.25 NA Intergenic MER66D|LTR|ERV1 -73607 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 242-16 chr21 29883880 29884170 + 1.25 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 55971 NM_001330994 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 346.5 chr11 37056103 37056491 + 1.25 NA Intergenic THE1B|LTR|ERVL-MaLR -458018 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 419-3 chr3 27053698 27054341 + 1.25 NA Intergenic L1PA17|LINE|L1 162504 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 332-5 chr7 34590400 34590972 + 1.25 NA intron (NR_033664, intron 2 of 4) L1ME3G|LINE|L1 -67532 NM_207172 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 270.5 chr1 152712077 152712384 + 1.25 NA Intergenic Intergenic 3183 NM_178356 199834 Hs.447955 NM_178356 ENSG00000187170 LCE4A LEP8|SPRL4A late cornified envelope 4A protein-coding 279.25-13 chr20 44601224 44601595 + 1.25 NA intron (NM_001281444, intron 4 of 5) intron (NM_001281444, intron 4 of 5) 18830 NM_001281445 11142 Hs.472831 NM_007066 ENSG00000168734 PKIG PKI-gamma cAMP-dependent protein kinase inhibitor gamma protein-coding 209.25-34 chr4 57390456 57390773 + 1.25 NA Intergenic MIR|SINE|MIR -35258 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 421.25 chr2 184481989 184482392 + 1.25 NA Intergenic L2|LINE|L2 103215 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 209.5 chr1 41403295 41403811 + 1.25 NA Intergenic L2a|LINE|L2 -27884 NR_135817 101929901 NR_135817 ENSG00000229901 LOC101929901 - uncharacterized LOC101929901 ncRNA 226.5-25 chr7 89488705 89488916 + 1.25 NA Intergenic Intergenic -630590 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 453.5 chr2 197005303 197006082 + 1.25 NA intron (NM_001367496, intron 21 of 27) intron (NM_001367496, intron 21 of 27) -78985 NM_001321100 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 161.5-68 chr4 62349996 62350228 + 1.25 NA Intergenic LTR80B|LTR|ERVL -188347 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 339-3 chr4 68211868 68212176 + 1.25 NA intron (NR_104048, intron 2 of 9) HAL1b|LINE|L1 6058 NR_104048 401136 Hs.652046 NM_001129907 ENSG00000250026 TMPRSS11BNL - TMPRSS11B N-terminal like, pseudogene pseudo 262.75-20 chr6 43608538 43608832 + 1.25 NA intron (NM_006502, intron 9 of 10) AluJo|SINE|Alu 18668 NM_001286216 54676 Hs.485449 NM_019096 ENSG00000172432 GTPBP2 JABELS GTP binding protein 2 protein-coding 318.75 chr17 70976998 70977360 + 1.25 NA Intergenic Intergenic 225000 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 326.5-5 chr7 7224862 7225189 + 1.25 NA intron (NM_020156, intron 1 of 3) L1PA15|LINE|L1 -30129 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 252.5-17 chr3 35956308 35956538 + 1.25 NA Intergenic Intergenic 211947 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 221.5-18 chr14 63216163 63216406 + 1.25 NA intron (NM_020663, intron 1 of 4) intron (NM_020663, intron 1 of 4) 11841 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 199.5-8 chr13 26371036 26371409 + 1.25 NA intron (NM_001346501, intron 4 of 11) intron (NM_001346501, intron 4 of 11) 117093 NM_001346501 1024 Hs.382306 NM_001260 ENSG00000132964 CDK8 K35 cyclin dependent kinase 8 protein-coding 181.25-55 chr7 77474279 77474581 + 1.25 NA Intergenic Intergenic -58081 NM_001350901 54103 Hs.186649 NM_017439 ENSG00000186088 GSAP PION gamma-secretase activating protein protein-coding 323.75-3 chr1 98433308 98433773 + 1.25 NA Intergenic Intergenic 222829 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 278-2 chr14 42193720 42194087 + 1.25 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 587047 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 282-9 chr3 164518180 164518479 + 1.25 NA Intergenic L1MA2|LINE|L1 313151 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 237.5-21 chr3 96943650 96943940 + 1.25 NA intron (NM_001080448, intron 2 of 17) AluJb|SINE|Alu 129201 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 168.25-55 chr5 9249229 9249430 + 1.25 NA intron (NM_003966, intron 5 of 22) MER34C_|LTR|ERV1 -195434 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 303-9 chr7 124064265 124064604 + 1.25 NA Intergenic Intergenic -31367 NM_001136002 730130 Hs.450249 NM_001136002 ENSG00000234224 TMEM229A - transmembrane protein 229A protein-coding 397.5-5 chr5 115705898 115706553 + 1.25 NA Intergenic Intergenic -33573 NR_104674 102467217 Hs.147738 NR_104674 LOC102467217 - uncharacterized LOC102467217 ncRNA 275.5-15 chr4 85081574 85081908 + 1.25 NA Intergenic Intergenic 114257 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 278.25-7 chr14 60270770 60271146 + 1.25 NA intron (NM_177951, intron 2 of 3) MLT1D|LTR|ERVL-MaLR 21737 NM_021003 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 180.25-17 chr13 94517010 94517218 + 1.25 NA intron (NM_001322186, intron 1 of 9) intron (NM_001322186, intron 1 of 9) 32292 NM_001322186 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 228.5-42 chr5 107887374 107887626 + 1.25 NA intron (NM_001163315, intron 7 of 8) intron (NM_001163315, intron 7 of 8) -216563 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 330.5-11 chr6 145579706 145580172 + 1.25 NA Intergenic L1MEc|LINE|L1 106938 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 238.75-33 chr8 129375147 129375469 + 1.25 NA intron (NR_130918, intron 1 of 2) L2|LINE|L2 108834 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 250.5-4 chr11 129554255 129554526 + 1.25 NA Intergenic MSTD-int|LTR|ERVL-MaLR 62879 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 269.25-3 chr1 208818699 208819089 + 1.25 NA Intergenic Intergenic 90206 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 244.25-25 chr9 78968180 78968430 + 1.25 NA Intergenic LTR22E|LTR|ERVK 177361 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 205.75-22 chr14 71670376 71670668 + 1.25 NA intron (NM_001354286, intron 11 of 24) intron (NM_001354286, intron 11 of 24) 84224 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 154.5-21 chr11 94993764 94993980 + 1.25 NA intron (NM_018039, intron 2 of 2) intron (NM_018039, intron 2 of 2) 20163 NM_018039 55693 Hs.503598 NM_018039 ENSG00000186280 KDM4D JMJD2D lysine demethylase 4D protein-coding 257.25-15 chr21 27001351 27001817 + 1.25 NA Intergenic MIRb|SINE|MIR -34496 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 227.75-8 chr11 98988490 98988919 + 1.25 NA Intergenic L1MA4A|LINE|L1 -32245 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 242.5-31 chr4 137970212 137970533 + 1.25 NA Intergenic L1ME3Cz|LINE|L1 -118642 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 187.25-29 chr17 69057158 69057508 + 1.25 NA intron (NM_080283, intron 1 of 38) intron (NM_080283, intron 1 of 38) 3594 NM_080283 10350 Hs.131686 NM_080283 ENSG00000154258 ABCA9 EST640918 ATP binding cassette subfamily A member 9 protein-coding 166.5-76 chr6 66668712 66668903 + 1.25 NA Intergenic Intergenic 880928 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 344.75-2 chr18 13836523 13837174 + 1.25 NA Intergenic Intergenic 12699 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 303.5-14 chr6 17949999 17950556 + 1.25 NA TTS (NM_001243423) TTS (NM_001243423) 37358 NM_001105567 63971 Hs.94499 NM_022113 ENSG00000137177 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 280.75-2 chr10 28404990 28405268 + 1.25 NA Intergenic Intergenic 90684 NR_134496 105376468 Hs.522525 NR_134496 ENSG00000237128 LINC02652 - long intergenic non-protein coding RNA 2652 ncRNA 214.25-33 chr7 14529315 14529707 + 1.25 NA intron (NM_001350717, intron 19 of 24) intron (NM_001350717, intron 19 of 24) 311939 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 188-14 chr11 74237832 74238051 + 1.25 NA intron (NM_001271593, intron 8 of 13) intron (NM_001271593, intron 8 of 13) 66652 NM_016147 51400 Hs.503251 NM_016147 ENSG00000214517 PPME1 ABDH19|PME-1 protein phosphatase methylesterase 1 protein-coding 158-26 chr16 82634398 82634575 + 1.25 NA intron (NM_001220492, intron 1 of 5) intron (NM_001220492, intron 1 of 5) 7517 NM_001220492 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 261.75-8 chr14 103036431 103036705 + 1.25 NA intron (NM_006035, intron 1 of 36) L1MD|LINE|L1 20981 NM_006035 9578 Hs.654634 NM_006035 ENSG00000198752 CDC42BPB MRCKB CDC42 binding protein kinase beta protein-coding 357.75-4 chr3 19580471 19581096 + 1.25 NA Intergenic MER63A|DNA|hAT-Blackjack -265852 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 278.25 chr10 25305190 25305434 + 1.25 NA intron (NM_020752, intron 2 of 10) L2c|LINE|L2 -129036 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 259 chr10 58847206 58847485 + 1.25 NA Intergenic MIR3|SINE|MIR 132330 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 215.25-25 chr22 40505328 40505590 + 1.25 NA intron (NM_020831, intron 3 of 14) MIRb|SINE|MIR -16341 NR_109965 101927257 Hs.662725 NR_109965 ENSG00000232564 MRTFA-AS1 - MRTFA antisense RNA 1 ncRNA 264-3 chr11 43437544 43437885 + 1.25 NA intron (NM_001307943, intron 17 of 19) intron (NM_001307943, intron 17 of 19) 78794 NM_018259 55761 Hs.191186 NM_018259 ENSG00000052841 TTC17 - tetratricopeptide repeat domain 17 protein-coding 282.5-9 chr17 12515875 12516336 + 1.25 NA Intergenic L1M6|LINE|L1 -33863 NR_034145 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 330.75-4 chr12 121392114 121392487 + 1.25 NA Intergenic Intergenic -7783 NM_025126 80196 Hs.292804 NM_025126 ENSG00000170633 RNF34 CARP-1|CARP1|RFI|RIF|RIFF|hRFI ring finger protein 34 protein-coding 293.25 chr1 162323690 162323949 + 1.25 NA intron (NM_014697, intron 4 of 9) intron (NM_014697, intron 4 of 9) -18727 NR_030283 693141 NR_030283 ENSG00000207729 MIR556 MIRN556|hsa-mir-556|mir-556 microRNA 556 ncRNA 233.25-11 chr12 38491576 38491858 + 1.25 NA Intergenic Intergenic 174943 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 466 chr16 21267755 21268381 + 1.25 NA intron (NM_001888, intron 6 of 9).2 MIR|SINE|MIR -32781 NR_026675 400508 Hs.578949 NM_001101368 CRYM-AS1 NCRNA00169 CRYM antisense RNA 1 ncRNA 346.25-5 chrX 110689058 110689814 + 1.25 NA intron (NR_159734, intron 9 of 12) (TATATATC)n|Simple_repeat|Simple_repeat 106381 NR_159734 91851 Hs.496587 NM_145234 ENSG00000101938 CHRDL1 CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1 chordin like 1 protein-coding 309-6 chr6 136912300 136912685 + 1.25 NA intron (NM_000288, intron 9 of 9) L1ME2z|LINE|L1 -9809 NM_001008783 340146 Hs.369703 NM_001008783 ENSG00000182747 SLC35D3 FRCL1 solute carrier family 35 member D3 protein-coding 338.25-5 chr8 131403236 131403659 + 1.25 NA Intergenic Intergenic -362538 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 187.25-54 chr6 19081396 19081565 + 1.25 NA intron (NR_110860, intron 10 of 10) L1MB7|LINE|L1 99000 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 287.25-4 chr2 127216699 127217062 + 1.25 NA intron (NM_001367502, intron 1 of 8) intron (NM_001367502, intron 1 of 8) 3419 NM_001367502 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 447.25-2 chr12 70308903 70309505 + 1.25 NA intron (NR_037615, intron 3 of 16) intron (NR_037615, intron 3 of 16) -57086 NM_014505 27345 Hs.525529 NM_014505 ENSG00000135643 KCNMB4 - potassium calcium-activated channel subfamily M regulatory beta subunit 4 protein-coding 235.25-20 chr9 6415636 6415957 + 1.25 NA intron (NM_152896, intron 1 of 15) intron (NM_152896, intron 1 of 15) 2597 NM_152896 115426 Hs.493401 NM_152896 ENSG00000147854 UHRF2 NIRF|RNF107|TDRD23|URF2 ubiquitin like with PHD and ring finger domains 2 protein-coding 258.75-8 chr14 54449914 54450209 + 1.25 NA Intergenic MLT1A1|LTR|ERVL-MaLR -8687 NM_005776 10175 Hs.294603 NM_005776 ENSG00000100528 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 225.25-8 chr11 78799243 78799503 + 1.25 NA intron (NM_001098816, intron 15 of 33) MIRc|SINE|MIR -224509 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 225-8 chr2 86405008 86405372 + 1.25 NA Intergenic L1MB7|LINE|L1 -36181 NM_018433 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 223-11 chr15 59204455 59204714 + 1.25 NA intron (NM_004998, intron 15 of 27) intron (NM_004998, intron 15 of 27) -2259 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 245.25-16 chr3 115770738 115771062 + 1.25 NA Intergenic Intergenic 134226 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 200.5-61 chr8 137201964 137202159 + 1.25 NA Intergenic Intergenic 211527 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 229.75-9 chr14 73189031 73189506 + 1.25 NA intron (NM_000021, intron 6 of 11) L1M3|LINE|L1 -48238 NR_158678 89932 Hs.509909 NM_173462 ENSG00000100767 PAPLN PPN papilin, proteoglycan like sulfated glycoprotein protein-coding 361.25-8 chr8 81232212 81232550 + 1.25 NA Intergenic (GT)n|Simple_repeat|Simple_repeat -48155 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 388 chr20 45049255 45049658 + 1.25 NA intron (NM_006282, intron 10 of 10) intron (NM_006282, intron 10 of 10) 51671 NM_001322799 3787 Hs.117780 NM_002251 ENSG00000124134 KCNS1 Kv9.1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding 225.75-2 chr1 85563043 85563249 + 1.25 NA intron (NM_001134445, intron 1 of 6) L1MEc|LINE|L1 15054 NM_001134445 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 272.75-16 chr4 44552284 44552674 + 1.25 NA Intergenic Intergenic 99162 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 191-18 chr12 18096133 18096364 + 1.25 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -6055 NR_104413 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 268.25-22 chr7 11842241 11842507 + 1.25 NA Intergenic L1M4a2|LINE|L1 -10176 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 222-7 chr14 21652848 21653066 + 1.25 NA Intergenic L1MEc|LINE|L1 -12126 NM_001001912 26686 Hs.547982 NM_001001912 ENSG00000221977 OR4E2 OR14-42 olfactory receptor family 4 subfamily E member 2 protein-coding 362-2 chr17 39595605 39595970 + 1.25 NA Intergenic Intergenic 12133 NM_006160 4761 Hs.322431 NM_006160 ENSG00000171532 NEUROD2 EIEE72|NDRF|bHLHa1 neuronal differentiation 2 protein-coding 156.75-13 chr10 56362647 56362793 + 1.25 NA Intergenic L1MEc|LINE|L1 -1447 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 212.75-15 chr2 151349308 151349637 + 1.25 NA intron (NR_110248, intron 2 of 2) intron (NR_110248, intron 2 of 2) -8120 NM_007115 7130 Hs.437322 NM_007115 ENSG00000123610 TNFAIP6 TSG-6|TSG6 TNF alpha induced protein 6 protein-coding 234.75-30 chr9 103958356 103958719 + 1.25 NA Intergenic MIRb|SINE|MIR -41172 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 237-5 chr2 151207064 151207466 + 1.25 NA Intergenic Intergenic 54598 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 233-10 chr12 70824210 70824524 + 1.25 NA intron (NM_002849, intron 2 of 13) intron (NM_002849, intron 2 of 13) -35447 NM_001207015 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 217-3 chr1 159167373 159167636 + 1.25 NA Intergenic MIRb|SINE|MIR -4111 NM_021189 57863 Hs.365689 NM_021189 ENSG00000162706 CADM3 BIgR|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3 cell adhesion molecule 3 protein-coding 200-42 chr8 2959255 2959507 + 1.25 NA intron (NM_033225, intron 62 of 69) AluJr|SINE|Alu -230930 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 267-12 chr8 120228228 120228645 + 1.25 NA intron (NM_021110, intron 17 of 47) intron (NM_021110, intron 17 of 47) 103334 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 156.25-58 chr3 161921360 161921550 + 1.25 NA Intergenic Intergenic 424647 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 458.25-2 chr4 60550439 60551145 + 1.25 NA Intergenic Intergenic -371827 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 396.25 chr10 70104635 70105248 + 1.25 NA intron (NM_018649, intron 7 of 8) intron (NM_018649, intron 7 of 8) 27884 NM_032797 84883 Hs.650680 NM_032797 ENSG00000042286 AIFM2 AMID|PRG3 apoptosis inducing factor mitochondria associated 2 protein-coding 193.75-8 chr11 15413083 15413314 + 1.25 NA Intergenic Intergenic -230687 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 415.75 chr15 71008409 71008968 + 1.25 NA intron (NM_017691, intron 12 of 15) intron (NM_017691, intron 12 of 15) 116245 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 167.75-42 chr18 58257905 58258071 + 1.25 NA intron (NM_001144965, intron 5 of 30) intron (NM_001144965, intron 5 of 30) 36417 NM_001144966 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 221.75-13 chr14 40029264 40029522 + 1.25 NA Intergenic Intergenic -596893 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 154.75-44 chr2 103250284 103250460 + 1.25 NA Intergenic LTR16B1|LTR|ERVL -265943 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 209.25-52 chr8 138951885 138952159 + 1.25 NA Intergenic L1MEf|LINE|L1 -37981 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 319.5-6 chr18 72465804 72466402 + 1.25 NA Intergenic Intergenic 78239 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 228.25-13 chr2 49350831 49351066 + 1.25 NA Intergenic Intergenic -196421 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 237.25-18 chr5 124062510 124062730 + 1.25 NA intron (NR_125774, intron 4 of 5) AluJo|SINE|Alu 375900 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 291.25-11 chr8 35560295 35560991 + 1.25 NA intron (NM_001322818, intron 2 of 16) intron (NM_001322818, intron 2 of 16) 16251 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 187.25-34 chr2 35275526 35275817 + 1.25 NA Intergenic L1M5|LINE|L1 -195734 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 247.25-4 chr10 18611780 18612177 + 1.25 NA intron (NM_182543, intron 5 of 10) intron (NM_182543, intron 5 of 10) 39609 NM_001351115 221078 Hs.396175 NM_182543 ENSG00000241058 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun RNA methyltransferase 6 protein-coding 379.25-3 chr5 45560433 45560933 + 1.25 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 135697 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 179-21 chr18 63884459 63884649 + 1.25 NA Intergenic Intergenic -3151 NM_002575 5055 Hs.594481 NM_002575 ENSG00000197632 SERPINB2 HsT1201|PAI|PAI-2|PAI2|PLANH2 serpin family B member 2 protein-coding 181.5-34 chr2 59270649 59270842 + 1.25 NA intron (NR_110219, intron 2 of 2) intron (NR_110219, intron 2 of 2) 53037 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 256.75-2 chr10 53183956 53184326 + 1.25 NA Intergenic (TTTTAATA)n|Simple_repeat|Simple_repeat -412441 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 209.25-17 chr18 36254552 36254798 + 1.25 NA intron (NM_017947, intron 11 of 14) Charlie2b|DNA|hAT-Charlie -43038 NM_025135 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 182.25-28 chr2 192179729 192179911 + 1.25 NA intron (NM_001305134, intron 3 of 9) intron (NM_001305134, intron 3 of 9) 15113 NM_001305145 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 322.5-6 chr16 80308627 80309045 + 1.25 NA intron (NR_120307, intron 2 of 5) MLT1J|LTR|ERVL-MaLR -231898 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 164.5-14 chr12 55438296 55438525 + 1.25 NA Intergenic Tigger3b|DNA|TcMar-Tigger 12156 NM_001005183 390326 Hs.553764 NM_001005183 ENSG00000185821 OR6C76 - olfactory receptor family 6 subfamily C member 76 protein-coding 210.5-6 chr10 51524321 51524663 + 1.25 NA intron (NM_001098512, intron 3 of 17) MER58B|DNA|hAT-Charlie 175103 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 525.25 chr6 54754279 54755140 + 1.25 NA Intergenic Intergenic -92062 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 235.75-32 chrX 118666099 118666393 + 1.25 NA intron (NM_144658, intron 45 of 52) AluSz6|SINE|Alu -61360 NM_001560 3597 Hs.496646 NM_001560 ENSG00000131724 IL13RA1 CD213A1|CT19|IL-13Ra|NR4 interleukin 13 receptor subunit alpha 1 protein-coding 232-8 chr11 14903048 14903428 + 1.25 NA Intergenic LTR16|LTR|ERVL -11033 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 200.5-27 chr18 22851330 22851497 + 1.25 NA Intergenic L1MEf|LINE|L1 -64576 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 251.25-16 chr2 138776855 138777301 + 1.25 NA intron (NM_007226, intron 1 of 1) intron (NM_007226, intron 1 of 1) 3312 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 352-3 chr2 75117659 75118117 + 1.25 NA intron (NM_015727, intron 2 of 3) MER47A|DNA|TcMar-Tigger 27076 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 184.5-2 chr1 24009165 24009428 + 1.25 NA Intergenic AluSx|SINE|Alu -28833 NR_034035 10772 Hs.3530 NM_006625 ENSG00000188529 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine and arginine rich splicing factor 10 protein-coding 245-23 chrX 13704397 13704620 + 1.25 NA intron (NM_004251, intron 2 of 2) intron (NM_004251, intron 2 of 2) 15380 NM_004251 9367 Hs.495704 NM_004251 ENSG00000123595 RAB9A RAB9 RAB9A, member RAS oncogene family protein-coding 275-12 chr21 28125486 28125833 + 1.25 NA intron (NR_126012, intron 5 of 5) intron (NR_126012, intron 5 of 5) 35256 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 153.25-76 chr3 39478209 39478415 + 1.25 NA intron (NR_103506, intron 1 of 2) Tigger3b|DNA|TcMar-Tigger 10632 NR_103505 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 212.75-36 chr8 132592591 132592883 + 1.25 NA intron (NR_135913, intron 9 of 10) L2c|LINE|L2 -31258 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 154.75-46 chr2 147755444 147755663 + 1.25 NA Intergenic Intergenic -88964 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 237.25-25 chr9 101555095 101555405 + 1.25 NA intron (NM_019592, intron 15 of 19) intron (NM_019592, intron 15 of 19) 21397 NM_019592 56254 Hs.729085 NM_019592 ENSG00000155827 RNF20 BRE1|BRE1A|hBRE1 ring finger protein 20 protein-coding 202.5-48 chr5 61521050 61521367 + 1.25 NA intron (NM_020928, intron 4 of 13) A-rich|Low_complexity|Low_complexity -116552 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 170.25-81 chr9 77214519 77214698 + 1.25 NA intron (NM_001018038, intron 10 of 68) intron (NM_001018038, intron 10 of 68) -36691 NR_026668 100286938 Hs.662256 NR_026668 ENSG00000232998 VPS13A-AS1 - VPS13A antisense RNA 1 ncRNA 288-7 chr3 113693774 113694056 + 1.25 NA intron (NM_001009899, intron 1 of 6) intron (NM_001009899, intron 1 of 6) 2727 NM_001009899 205717 Hs.632570 NM_001009899 ENSG00000176542 USF3 KIAA2018 upstream transcription factor family member 3 protein-coding 343.5-7 chr6 135365131 135365640 + 1.25 NA intron (NM_017651, intron 22 of 27) L1PB1|LINE|L1 126225 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 335.75-3 chr17 50368813 50369543 + 1.25 NA intron (NM_016504, intron 3 of 3) MIR|SINE|MIR 4006 NM_016504 51264 Hs.7736 NM_016504 ENSG00000108826 MRPL27 L27mt mitochondrial ribosomal protein L27 protein-coding 329.25-3 chr14 70776596 70777270 + 1.25 NA intron (NM_001284231, intron 1 of 11) AluSq10|SINE|Alu 6519 NM_001284231 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 233.75-29 chr6 56539209 56539558 + 1.25 NA intron (NM_001144770, intron 53 of 94) intron (NM_001144770, intron 53 of 94) 103506 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 322.75 chr1 50808578 50808967 + 1.25 NA intron (NM_007051, intron 2 of 18) L1PA15|LINE|L1 151495 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 236.5-7 chr12 52429349 52429572 + 1.25 NA intron (NM_004693, intron 5 of 8) intron (NM_004693, intron 5 of 8) 4911 NM_004693 9119 Hs.697046 NM_004693 ENSG00000170454 KRT75 K6HF|KB18|PFB keratin 75 protein-coding 164.75-58 chr4 39227781 39228019 + 1.25 NA intron (NM_025132, intron 15 of 36) intron (NM_025132, intron 15 of 36) 45371 NM_001317924 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 259.75 chr1 164318934 164319462 + 1.25 NA Intergenic Intergenic -240162 NM_002585 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 312.75-3 chr20 47493220 47493566 + 1.25 NA Intergenic Intergenic -8494 NM_001174087 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 275.5-13 chr3 35328342 35328682 + 1.25 NA intron (NR_110817, intron 1 of 3) intron (NR_110817, intron 1 of 3) 65511 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 177.25-21 chr14 55447268 55447456 + 1.25 NA Intergenic Intergenic -6817 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 150.75-74 chr5 36124102 36124248 + 1.25 NA intron (NM_001007527, intron 7 of 17) intron (NM_001007527, intron 7 of 17) 23813 NR_030306 693165 NR_030306 ENSG00000207756 MIR580 MIRN580|hsa-mir-580 microRNA 580 ncRNA 227.5-24 chr6 129057318 129057653 + 1.25 NA intron (NM_000426, intron 2 of 64) Charlie18a|DNA|hAT-Charlie 174344 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 339-4 chr6 64461161 64461698 + 1.25 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 654593 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 220-6 chr15 58478578 58478878 + 1.25 NA intron (NR_120338, intron 2 of 2) MIRb|SINE|MIR 20007 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 298.5-8 chr3 110062554 110062958 + 1.25 NA Intergenic Intergenic 459928 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 186.75-79 chr8 76693595 76693876 + 1.25 NA intron (NM_024721, intron 1 of 10) intron (NM_024721, intron 1 of 10) -10460 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 232-2 chr1 44036718 44037046 + 1.25 NA Intergenic MIRb|SINE|MIR -5420 NM_001328630 6536 Hs.442590 NM_006934 ENSG00000196517 SLC6A9 GCENSG|GLYT1 solute carrier family 6 member 9 protein-coding 267.25-11 chr6 97613567 97614160 + 1.25 NA intron (NR_110757, intron 2 of 4) L1M1|LINE|L1 308277 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 229.25-6 chr10 54481655 54482058 + 1.25 NA intron (NM_001142773, intron 2 of 31) intron (NM_001142773, intron 2 of 31) -4374 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 263.5-23 chr8 88809741 88810120 + 1.25 NA Intergenic MIRb|SINE|MIR -482447 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 280.5-14 chrX 78059119 78059381 + 1.25 NA Intergenic THE1D|LTR|ERVL-MaLR -44998 NM_000291 5230 Hs.78771 NM_000291 ENSG00000102144 PGK1 HEL-S-68p|MIG10|PGKA phosphoglycerate kinase 1 protein-coding 306.25 chr1 68446806 68447180 + 1.25 NA intron (NM_000329, intron 2 of 13) intron (NM_000329, intron 2 of 13) 2961 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 164-86 chr8 132357239 132357390 + 1.25 NA intron (NM_004519, intron 1 of 14) LTR16E1|LTR|ERVL 89948 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 421.75 chr10 83517368 83517792 + 1.25 NA Intergenic Intergenic 159509 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 274.5-12 chr4 60957521 60957959 + 1.25 NA Intergenic L1ME3F|LINE|L1 35121 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 193.25-53 chr6 17272793 17272992 + 1.25 NA Intergenic L2a|LINE|L2 -8469 NM_001143942 221662 Hs.519904 NM_153020 ENSG00000112183 RBM24 RNPC6|dJ259A10.1 RNA binding motif protein 24 protein-coding 154.5-10 chr1 164348805 164348956 + 1.25 NA Intergenic L1PA14|LINE|L1 -210480 NM_002585 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 399.25 chr12 37847720 37848491 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr -468669 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 149.5-72 chr5 53449732 53449895 + 1.25 NA Intergenic Intergenic -30816 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 299.75 chr1 27291666 27291939 + 1.25 NA intron (NM_001276252, intron 6 of 15) MIRb|SINE|MIR -30343 NM_032125 84065 Hs.469171 NM_032125 ENSG00000186501 TMEM222 C1orf160 transmembrane protein 222 protein-coding 309.75-6 chr8 84413255 84413799 + 1.25 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -1957 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 308.75-4 chr12 18220547 18221109 + 1.25 NA Intergenic Intergenic -40712 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 217.5-32 chr6 37239955 37240186 + 1.25 NA intron (NM_145316, intron 1 of 3) intron (NM_145316, intron 1 of 3) 17529 NM_145316 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 197-35 chr5 43838786 43839029 + 1.25 NA Intergenic Intergenic -235677 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 187.5-33 chr2 99563937 99564174 + 1.25 NA intron (NM_001025108, intron 19 of 23) intron (NM_001025108, intron 19 of 23) -74038 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 300.25-11 chr4 91576300 91576709 + 1.25 NA intron (NM_001145065, intron 10 of 10) L1MA10|LINE|L1 700798 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 397.5-4 chr5 24693077 24693595 + 1.25 NA Intergenic L2a|LINE|L2 -48358 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 204.75-61 chr9 92423746 92424011 + 1.25 NA intron (NM_005014, intron 1 of 2) intron (NM_005014, intron 1 of 2) 676 NM_005014 4958 Hs.94070 NM_005014 ENSG00000127083 OMD OSAD|SLRR2C osteomodulin protein-coding 236.5-10 chr16 52560758 52561059 + 1.25 NA intron (NR_033920, intron 3 of 3) AluJr|SINE|Alu -13106 NM_001146188 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 363.25 chr10 74841069 74841403 + 1.25 NA intron (NM_001370137, intron 2 of 17) intron (NM_001370137, intron 2 of 17) 14636 NM_001370144 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 343.75-2 chr11 100209198 100209641 + 1.25 NA intron (NM_001243270, intron 14 of 23) intron (NM_001243270, intron 14 of 23) -477869 NM_152432 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 269.5-3 chr1 215819498 215819932 + 1.25 NA intron (NM_206933, intron 47 of 71) intron (NM_206933, intron 47 of 71) 252411 NM_016121 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 205-9 chr11 96566393 96566640 + 1.25 NA Intergenic (TATAA)n|Simple_repeat|Simple_repeat 58091 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 303.25-7 chr22 49734816 49735312 + 1.25 NA Intergenic Intergenic -77545 NR_110522 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 220.75-24 chr3 61488432 61488657 + 1.25 NA Intergenic MIR|SINE|MIR -73027 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 157.5-28 chr14 42231157 42231371 + 1.25 NA Intergenic Intergenic 624408 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 319.25-2 chr2 131586925 131587362 + 1.25 NA Intergenic Intergenic -4899 NR_033885 440915 Hs.631267 NM_001017421 POTEKP ACT|ACTBL3|POTE2delta|POTEK POTE ankyrin domain family member K, pseudogene pseudo 223.25-10 chr18 3766013 3766338 + 1.25 NA intron (NM_001242762, intron 2 of 9) L1MD1|LINE|L1 79183 NM_001003809 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 328.5-3 chr15 90741595 90741994 + 1.25 NA intron (NM_001287246, intron 2 of 22) intron (NM_001287246, intron 2 of 22) 24448 NM_001287248 641 Hs.725208 NM_000057 ENSG00000197299 BLM BS|MGRISCE1|RECQ2|RECQL2|RECQL3 BLM RecQ like helicase protein-coding 285.5-9 chr20 7312049 7312421 + 1.25 NA Intergenic Intergenic -4803 NR_135005 101929288 Hs.738005 NR_135005 ENSG00000261249 LINC01751 - long intergenic non-protein coding RNA 1751 ncRNA 297.75-11 chr4 185158300 185158738 + 1.25 NA Intergenic AluSx4|SINE|Alu 15253 NM_001151 291 Hs.246506 NM_001151 ENSG00000151729 SLC25A4 AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1 solute carrier family 25 member 4 protein-coding 234-8 chr2 123896734 123897045 + 1.25 NA Intergenic Intergenic 128285 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 214-26 chr4 91069378 91069616 + 1.25 NA intron (NM_001145065, intron 9 of 10) L2a|LINE|L2 834466 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 237-10 chr4 43974387 43974647 + 1.25 NA Intergenic Intergenic -42344 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 290-4 chr4 33938749 33939118 + 1.25 NA intron (NR_125902, intron 4 of 4) MER5A1|DNA|hAT-Charlie 100960 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 353 chr12 91426859 91427270 + 1.25 NA Intergenic Intergenic -244247 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 258.25-24 chr7 146057025 146057294 + 1.25 NA Intergenic HERVP71A-int|LTR|ERV1 -717112 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 306.75-8 chr2 198683418 198683930 + 1.25 NA Intergenic MER58A|DNA|hAT-Charlie -308577 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 367.25-2 chr3 83458908 83459216 + 1.25 NA Intergenic Intergenic 1410513 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 272.25-8 chr19 43956214 43956591 + 1.25 NA intron (NM_001297589, intron 1 of 4) MER21-int|LTR|ERVL 5157 NM_013359 7638 Hs.631598 NM_013359 ENSG00000159905 ZNF221 - zinc finger protein 221 protein-coding 258.25-4 chr10 55109017 55109430 + 1.25 NA intron (NM_001354404, intron 3 of 34) MamGypLTR1a|LTR|Gypsy -307932 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 150.75-2 chr1 53469200 53469434 + 1.25 NA Intergenic Intergenic 9918 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 364.75-5 chr8 103046789 103047278 + 1.25 NA intron (NM_001695, intron 3 of 12) intron (NM_001695, intron 3 of 12) 25950 NM_001695 528 Hs.86905 NM_001695 ENSG00000155097 ATP6V1C1 ATP6C|ATP6D|VATC|Vma5 ATPase H+ transporting V1 subunit C1 protein-coding 195.5-20 chr15 81719553 81719782 + 1.25 NA Intergenic L1M5|LINE|L1 326351 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 214.5-3 chr10 43347969 43348240 + 1.25 NA Intergenic Intergenic -23532 NM_173160 53828 Hs.130497 NM_173160 ENSG00000150201 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 358.75-3 chr5 29851554 29852160 + 1.25 NA Intergenic AluSz|SINE|Alu -28703 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 277-5 chr20 47510924 47511151 + 1.25 NA intron (NM_181659, intron 1 of 22) intron (NM_181659, intron 1 of 22) 9150 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 263.25-27 chr8 62633441 62633774 + 1.25 NA intron (NM_001304533, intron 3 of 6) intron (NM_001304533, intron 3 of 6) -344254 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 214.25-8 chr12 41110504 41110828 + 1.25 NA Intergenic Intergenic -77654 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 161.25-64 chr6 112493982 112494290 + 1.25 NA Intergenic Intergenic 146806 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 331.25-5 chr5 18338244 18338837 + 1.25 NA Intergenic Intergenic 531266 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 242-14 chr2 133073911 133074263 + 1.25 NA intron (NM_207481, intron 6 of 17) MER65C|LTR|ERV1 158530 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 274.75-10 chr20 1033896 1034410 + 1.25 NA Intergenic MLT1H2|LTR|ERVL-MaLR -31842 NM_001029871 343637 Hs.444980 NM_001029871 ENSG00000101282 RSPO4 C20orf182|CRISTIN4 R-spondin 4 protein-coding 223.75-17 chr21 15429964 15430301 + 1.25 NA Intergenic Intergenic -299802 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 387 chr10 31295526 31295994 + 1.25 NA Intergenic L1ME3A|LINE|L1 -22657 NM_001323638 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 168-19 chr13 38164091 38164296 + 1.25 NA Intergenic Intergenic -20961 NR_047500 100874188 Hs.569249 NR_047500 ENSG00000223685 LINC00571 - long intergenic non-protein coding RNA 571 ncRNA 317 chr10 121124085 121124569 + 1.25 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 272965 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 265.75-9 chr3 17475814 17476377 + 1.25 NA intron (NM_014744, intron 3 of 21) L1M5|LINE|L1 223925 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 447.25 chr12 8056703 8057336 + 1.25 NA 3' UTR (NM_001326475, exon 2 of 2) 3' UTR (NM_001326475, exon 2 of 2) 9340 NM_001326477 719 Hs.504656 NM_004054 ENSG00000171860 C3AR1 AZ3B|C3AR|HNFAG09 complement C3a receptor 1 protein-coding 209-13 chr13 105688836 105689133 + 1.25 NA Intergenic Intergenic -17846 NR_120418 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 172.75-39 chr20 51188432 51188715 + 1.25 NA Intergenic MIRb|SINE|MIR -165466 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 366.5 chr1 182736021 182736763 + 1.25 NA Intergenic Intergenic 23530 NR_146548 105371644 Hs.496952 NR_146548 ENSG00000227181 LINC01688 - long intergenic non-protein coding RNA 1688 ncRNA 192.75-64 chr8 135613653 135614087 + 1.25 NA intron (NM_006558, intron 7 of 8) intron (NM_006558, intron 7 of 8) 156414 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 192.25-63 chr8 117986783 117987021 + 1.25 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -65989 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 271.25 chr10 5307206 5307602 + 1.25 NA Intergenic L2|LINE|L2 -36168 NR_149060 110806285 NR_149060 ENSG00000224034 LINC02561 - long intergenic non-protein coding RNA 2561 ncRNA 430-2 chr15 58532915 58533642 + 1.25 NA intron (NM_000236, intron 1 of 8) intron (NM_000236, intron 1 of 8) -34543 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 252 chr1 45406489 45406808 + 1.25 NA intron (NM_007170, intron 3 of 10) AluJr|SINE|Alu -66178 NM_001293192 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 271.75-2 chr10 65819841 65820457 + 1.25 NA Intergenic L1ME3|LINE|L1 248724 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 170.75-72 chr8 118669835 118669991 + 1.25 NA intron (NR_038210, intron 3 of 4) MER103C|DNA|hAT-Charlie -47950 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 214.5-16 chr17 54392208 54392443 + 1.25 NA Intergenic Intergenic -508366 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 348.5-2 chr14 52031435 52032031 + 1.25 NA intron (NM_007361, intron 9 of 21) intron (NM_007361, intron 9 of 21) 37326 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 252.25-14 chr6 39867078 39867322 + 1.25 NA intron (NM_015345, intron 5 of 24) intron (NM_015345, intron 5 of 24) 30180 NR_125831 100505635 Hs.668513 NR_125831 ENSG00000235033 LOC100505635 - uncharacterized LOC100505635 ncRNA 224.25-24 chr22 24978383 24978690 + 1.25 NA Intergenic MIR|SINE|MIR -31841 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 342.75-4 chr8 113169658 113170030 + 1.25 NA intron (NM_001363185, intron 4 of 66) intron (NM_001363185, intron 4 of 66) 207308 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 185.75-3 chr1 162639548 162639720 + 1.25 NA intron (NM_006182, intron 1 of 17) L1MC1|LINE|L1 7170 NM_001014796 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10|WRCN discoidin domain receptor tyrosine kinase 2 protein-coding 249-3 chr2 57050964 57051325 + 1.25 NA Intergenic Intergenic -856507 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 267.25-2 chr11 93184377 93184692 + 1.25 NA intron (NM_152313, intron 2 of 10) intron (NM_152313, intron 2 of 10) 12892 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 390.5 chr1 74292446 74292935 + 1.25 NA intron (NM_015978, intron 5 of 24) L1MEg|LINE|L1 57303 NM_015978 51086 Hs.480085 NM_015978 ENSG00000116783 TNNI3K CARK|CCDD TNNI3 interacting kinase protein-coding 258.5-11 chr2 28290634 28290952 + 1.25 NA intron (NM_199193, intron 11 of 13) intron (NM_199193, intron 11 of 13) 19666 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 193.75-56 chr7 55060117 55060350 + 1.25 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) 41201 NM_201283 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 420 chr10 15030962 15031466 + 1.25 NA intron (NR_144471, intron 3 of 7) intron (NR_144471, intron 3 of 7) 4211 NR_144469 105376432 Hs.723069 NR_144469 DCLRE1CP1 - DNA cross-link repair 1C pseudogene 1 pseudo 239-17 chr8 74382232 74382622 + 1.25 NA intron (NM_001362931, intron 5 of 5) intron (NM_001362931, intron 5 of 5) 32024 NM_001362931 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 323-9 chr9 25541697 25542043 + 1.25 NA Intergenic Intergenic 136988 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 237.25-9 chr2 55232383 55232627 + 1.25 NA promoter-TSS (NM_001353785) promoter-TSS (NM_001353785) 58 NM_001135598 130162 Hs.347014 NM_152385 ENSG00000162994 CLHC1 C2orf63 clathrin heavy chain linker domain containing 1 protein-coding 316.5-3 chr2 52825887 52826356 + 1.25 NA Intergenic L2a|LINE|L2 -123506 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 347.5-11 chr5 109522981 109523396 + 1.25 NA Intergenic AluJr|SINE|Alu -113214 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 247.5-38 chr8 135366301 135366536 + 1.25 NA Intergenic Intergenic -91038 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 329.25-7 chr8 129942556 129942991 + 1.25 NA intron (NM_001353256, intron 2 of 13) MIR|SINE|MIR -2962 NM_001353314 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 346.5-2 chr13 91689558 91689896 + 1.25 NA intron (NM_004466, intron 2 of 7) Tigger3b|DNA|TcMar-Tigger 291106 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 347.5-4 chr13 59924664 59925195 + 1.25 NA intron (NM_001258369, intron 17 of 26) intron (NM_001258369, intron 17 of 26) -87789 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 249.5-29 chr8 78393313 78393707 + 1.25 NA Intergenic Intergenic -122830 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 183.75-29 chr14 66239809 66239995 + 1.25 NA Intergenic MIRb|SINE|MIR -246469 NR_110307 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 323 chr11 82749929 82750342 + 1.25 NA Intergenic L1ME2|LINE|L1 -16271 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 252.25-12 chr5 114952725 114953085 + 1.25 NA Intergenic THE1A|LTR|ERVL-MaLR -179492 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 250.5-13 chr18 72138159 72138420 + 1.25 NA Intergenic Intergenic -356063 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 254.5-7 chr14 66533066 66533337 + 1.25 NA intron (NM_001024218, intron 1 of 21) L3|LINE|CR1 25794 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 350.75-2 chr21 32720577 32721007 + 1.25 NA intron (NM_203446, intron 2 of 32) intron (NM_203446, intron 2 of 32) 7129 NM_001160306 8867 Hs.473632 NM_003895 ENSG00000159082 SYNJ1 EIEE53|INPP5G|PARK20 synaptojanin 1 protein-coding 337.25 chr16 80776166 80776662 + 1.25 NA intron (NM_152342, intron 1 of 6) L1MEg|LINE|L1 28184 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 255.5-22 chr4 4740143 4740489 + 1.25 NA Intergenic MSTC|LTR|ERVL-MaLR -21444 NR_125892 101928279 Hs.586152 NR_125892 LOC101928279 - uncharacterized LOC101928279 ncRNA 323.25-4 chr4 59879473 59880112 + 1.25 NA Intergenic Intergenic 866219 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 192.25-62 chr8 111083397 111083703 + 1.25 NA Intergenic Intergenic -56117 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 418.25 chr10 66729248 66729755 + 1.25 NA intron (NM_001127384, intron 9 of 17) L1PB1|LINE|L1 -196535 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 244.5-20 chr20 48844593 48845015 + 1.25 NA Intergenic Intergenic -16805 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 315.5-9 chr6 161070019 161070411 + 1.25 NA intron (NM_001291958, intron 4 of 27) intron (NM_001291958, intron 4 of 27) 78446 NM_005922 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 203-2 chr1 227613688 227613924 + 1.25 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 50250 NR_102302 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 164.5-24 chr16 60248650 60248819 + 1.25 NA Intergenic Intergenic 111059 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 468-3 chr4 72643366 72643983 + 1.25 NA Intergenic Intergenic -74453 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 450.5 chr1 22236784 22237517 + 1.25 NA Intergenic MIR1_Amn|SINE|MIR -29089 NR_039613 100616433 NR_039613 ENSG00000266564 MIR4418 - microRNA 4418 ncRNA 194.75-20 chr2 103566776 103567057 + 1.25 NA Intergenic L1MB4|LINE|L1 -582487 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 453.75 chr7 121338918 121339382 + 1.25 NA exon (NM_057168, exon 4 of 4) exon (NM_057168, exon 4 of 4) 10150 NM_057168 51384 Hs.272375 NM_016087 ENSG00000002745 WNT16 - Wnt family member 16 protein-coding 321.25-5 chr5 86932998 86933344 + 1.25 NA Intergenic Intergenic 181783 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 364.5 chr14 48092697 48093203 + 1.25 NA Intergenic L1ME3E|LINE|L1 -297936 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 325.5-2 chr11 47042337 47042870 + 1.25 NA intron (NR_103472, intron 2 of 7) intron (NR_103472, intron 2 of 7) 105842 NR_103472 79096 Hs.368296 NM_024113 ENSG00000149179 C11orf49 - chromosome 11 open reading frame 49 protein-coding 304.5-14 chr9 82986858 82987320 + 1.25 NA intron (NM_152573, intron 16 of 16) intron (NM_152573, intron 16 of 16) 76053 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 224.25-14 chr15 51879105 51879551 + 1.25 NA intron (NM_014547, intron 3 of 9) intron (NM_014547, intron 3 of 9) 44792 NR_109775 100422556 Hs.664788 NR_109775 LOC100422556 - LEO1 homolog, Paf1/RNA polymerase II complex component pseudogene pseudo 263.5-19 chr5 160051200 160051711 + 1.25 NA intron (NM_003314, intron 7 of 7) intron (NM_003314, intron 7 of 7) 42316 NM_003314 7265 Hs.519718 NM_003314 ENSG00000113312 TTC1 TPR1 tetratricopeptide repeat domain 1 protein-coding 233.25-35 chr9 31456702 31457072 + 1.25 NA Intergenic Intergenic -75397 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 194-61 chr9 95969791 95970084 + 1.25 NA intron (NM_020207, intron 14 of 18) intron (NM_020207, intron 14 of 18) 51874 NR_024129 100188953 Hs.434310 NR_024129 ENSG00000225194 LINC00092 NCRNA00092 long intergenic non-protein coding RNA 92 ncRNA 314-5 chr4 49144127 49144836 + 1.25 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 157839 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 275.75-8 chr22 47946270 47946663 + 1.25 NA Intergenic Intergenic 314792 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 263.5-16 chr4 113739385 113739759 + 1.25 NA intron (NM_001321585, intron 2 of 19) intron (NM_001321585, intron 2 of 19) 22166 NM_001321591 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 152.25 chr1 12260893 12261180 + 1.25 NA exon (NM_018156, exon 12 of 69) exon (NM_018156, exon 12 of 69) 31006 NM_018156 55187 Hs.439381 NM_015378 ENSG00000048707 VPS13D SCAR4 vacuolar protein sorting 13 homolog D protein-coding 301.25-12 chr8 113411928 113412270 + 1.25 NA intron (NM_001363185, intron 1 of 66) MIR|SINE|MIR 24840 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 373.5-6 chr5 145067377 145067732 + 1.25 NA Intergenic ERVL-E-int|LTR|ERVL 767788 NM_138492 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 260.25 chr1 76998625 76998857 + 1.25 NA intron (NM_001320274, intron 2 of 2) intron (NM_001320274, intron 2 of 2) -61402 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 232.25-37 chr9 135495305 135495664 + 1.25 NA exon (NM_001048265, exon 3 of 3) exon (NM_001048265, exon 3 of 3) 4385 NM_001048265 138162 Hs.414028 NM_144654 ENSG00000160345 C9orf116 PIERCE1|RbEST47 chromosome 9 open reading frame 116 protein-coding 229.5-14 chr16 71647654 71647930 + 1.25 NA 3' UTR (NM_001289003, exon 18 of 18) 3' UTR (NM_001289003, exon 18 of 18) 21608 NM_001271329 91862 Hs.513706 NM_052858 ENSG00000140832 MARVELD3 MARVD3|MRVLDC3 MARVEL domain containing 3 protein-coding 355.75-2 chr1 246950343 246950861 + 1.25 NA intron (NR_037892, intron 5 of 5) AluSx|SINE|Alu -18654 NM_001323342 25909 Hs.300887 NM_015446 ENSG00000153207 AHCTF1 ELYS|MST108|MSTP108|TMBS62 AT-hook containing transcription factor 1 protein-coding 262 chr1 46102234 46102526 + 1.25 NA intron (NM_001303427, intron 1 of 9) intron (NM_001303427, intron 1 of 9) 28293 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 150-46 chr20 8307937 8308147 + 1.25 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) 59338 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 568.5 chr5 141894887 141895688 + 1.25 NA TTS (NR_033244) TTS (NR_033244) 1408 NR_033244 729080 Hs.730564 NR_033244 LOC729080 - glycine cleavage system protein H (aminomethyl carrier) pseudogene pseudo 229.75-27 chr5 28770592 28770827 + 1.25 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -156161 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 315.25-5 chr16 76283920 76284229 + 1.25 NA intron (NR_136213, intron 1 of 23) (ATTTTT)n|Simple_repeat|Simple_repeat 6673 NM_001322180 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 214.25-30 chr6 23096450 23096832 + 1.25 NA Intergenic THE1B|LTR|ERVL-MaLR -378717 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 501 chr8 119012656 119013109 + 1.25 NA intron (NM_001324095, intron 1 of 7) L1MC1|LINE|L1 -54365 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 414.75 chr2 58567629 58568226 + 1.25 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 47174 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 406.5 chr4 47062226 47062661 + 1.25 NA intron (NM_000812, intron 3 of 8) (TA)n|Simple_repeat|Simple_repeat 30876 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 353-5 chr7 43396148 43396538 + 1.25 NA intron (NM_001287059, intron 5 of 27) intron (NM_001287059, intron 5 of 27) 126199 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 227.25-18 chr2 50217639 50217872 + 1.25 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) 129999 NM_001330097 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 375.5-6 chr5 25659254 25660043 + 1.25 NA Intergenic Intergenic 468695 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 348.75-9 chr6 129258732 129259341 + 1.25 NA intron (NM_000426, intron 14 of 64) intron (NM_000426, intron 14 of 64) 375895 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 292.25-5 chr5 51176208 51176581 + 1.25 NA Intergenic Intergenic -206207 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 301.5-15 chr8 70267253 70267698 + 1.25 NA intron (NM_001321711, intron 2 of 21) AluJb|SINE|Alu 135915 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 551 chr12 40258962 40260003 + 1.25 NA exon (NM_198578, exon 13 of 51) exon (NM_198578, exon 13 of 51) 34485 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 325-3 chr8 73653350 73653753 + 1.25 NA intron (NM_001164383, intron 1 of 9) intron (NM_001164383, intron 1 of 9) 93289 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 242-2 chr1 216576838 216577063 + 1.25 NA intron (NM_001243505, intron 3 of 6) intron (NM_001243505, intron 3 of 6) 146479 NM_001438 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 197.5-10 chr11 77231978 77232149 + 1.25 NA intron (NM_182833, intron 14 of 16) intron (NM_182833, intron 14 of 16) 69603 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 208.25-24 chr2 198618040 198618222 + 1.25 NA Intergenic Intergenic -243034 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 378.5-2 chr1 112380789 112381192 + 1.25 NA Intergenic Intergenic -15224 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 390-2 chr3 86359406 86359952 + 1.25 NA Intergenic Intergenic -122264 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 183-4 chr1 105620179 105620433 + 1.25 NA Intergenic Intergenic -1371 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 257.75-10 chr2 142359121 142359707 + 1.25 NA Intergenic Intergenic -227713 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 280.75-3 chr13 80929958 80930432 + 1.25 NA Intergenic Intergenic -88196 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 212.75-25 chr4 112023262 112023669 + 1.25 NA Intergenic Intergenic -121989 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 264-6 chr2 84588696 84589008 + 1.25 NA exon (NM_001370, exon 16 of 77) exon (NM_001370, exon 16 of 77) 72397 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 231.75 chr1 86719889 86720377 + 1.25 NA intron (NM_016009, intron 3 of 8) intron (NM_016009, intron 3 of 8) 15557 NM_016009 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like, endophilin B1 protein-coding 306.5-7 chr6 51504651 51505220 + 1.25 NA Intergenic Intergenic -116935 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 378.5 chr1 8265759 8266175 + 1.25 NA Intergenic AluSc|SINE|Alu -52118 NM_001080397 50651 Hs.463036 NM_001080397 ENSG00000162426 SLC45A1 DNB5|IDDNPF solute carrier family 45 member 1 protein-coding 305.5-5 chr2 122339491 122339853 + 1.25 NA Intergenic Intergenic 584021 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 218.25 chr1 29582146 29582475 + 1.25 NA Intergenic Intergenic -232196 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 296.5-7 chr15 71953241 71953614 + 1.25 NA intron (NM_006901, intron 14 of 41) intron (NM_006901, intron 14 of 41) 142873 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 268-19 chr8 124987728 124988067 + 1.25 NA Intergenic ERVL-int|LTR|ERVL 10301 NR_134457 105375744 Hs.575534 NR_134457 ENSG00000253513 LOC105375744 - uncharacterized LOC105375744 ncRNA 344.25-9 chr7 26433422 26433900 + 1.25 NA intron (NR_148500, intron 2 of 5) intron (NR_148500, intron 2 of 5) -34243 NR_136272 105375304 Hs.735352 NR_136270 ENSG00000225792 LOC105375304 - uncharacterized LOC105375304 ncRNA 308-7 chr7 90832862 90833372 + 1.25 NA intron (NM_012395, intron 4 of 13) intron (NM_012395, intron 4 of 13) 123301 NM_001287136 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 289-7 chr8 128509339 128509599 + 1.25 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 55210 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 330-5 chr3 8481560 8482044 + 1.25 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 19856 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 415.25 chr11 115867984 115868337 + 1.25 NA Intergenic L1MA4A|LINE|L1 -107960 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 257-14 chr9 100559675 100560135 + 1.25 NA intron (NM_001198812, intron 7 of 9) intron (NM_001198812, intron 7 of 9) -18174 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 247.5-23 chr3 177903722 177903953 + 1.25 NA Intergenic Intergenic 86972 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 364.75-3 chr14 54122308 54122827 + 1.25 NA Intergenic Intergenic -165676 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 354.5-5 chr4 43605147 43605723 + 1.25 NA Intergenic Intergenic -112892 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 351.25-2 chr2 191359400 191359998 + 1.25 NA intron (NM_012223, intron 7 of 28) intron (NM_012223, intron 7 of 28) 114295 NM_001330237 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 284-6 chr3 31040041 31040345 + 1.25 NA Intergenic Intergenic 121594 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 224.25-21 chr2 186369044 186369294 + 1.25 NA Intergenic L1MC5a|LINE|L1 -117091 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 342.25-3 chr20 41157448 41157820 + 1.25 NA intron (NM_182811, intron 1 of 31) intron (NM_182811, intron 1 of 31) -11389 NR_106931 102466912 NR_106931 ENSG00000276169 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 195.75-35 chr2 45817130 45817437 + 1.25 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 165608 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 179.75-48 chr5 106050150 106050360 + 1.25 NA Intergenic Intergenic 950781 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 249.25-11 chr4 33234270 33234479 + 1.25 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 805519 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 221.25-11 chr12 26667802 26668256 + 1.25 NA intron (NM_002223, intron 13 of 56) Charlie13a|DNA|hAT-Charlie 165165 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 279.5-4 chr14 69022566 69022995 + 1.25 NA Intergenic AluSx|SINE|Alu 43098 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 270.25-7 chr17 53676028 53676365 + 1.25 NA Intergenic Intergenic -146731 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 211-16 chr17 34337457 34337707 + 1.25 NA Intergenic L1PA8|LINE|L1 18147 NM_005623 6355 Hs.271387 NM_005623 ENSG00000108700 CCL8 HC14|MCP-2|MCP2|SCYA10|SCYA8 C-C motif chemokine ligand 8 protein-coding 217.75-22 chr2 209791181 209791454 + 1.25 NA intron (NM_032504, intron 6 of 63) intron (NM_032504, intron 6 of 63) 19324 NM_032504 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 242.5-23 chr3 95670144 95670514 + 1.25 NA intron (NR_077228, intron 2 of 4) intron (NR_077228, intron 2 of 4) 12864 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 155.75-9 chr1 223804952 223805153 + 1.25 NA intron (NM_005426, intron 6 of 18) intron (NM_005426, intron 6 of 18) 40895 NM_001031685 7159 Hs.523968 NM_005426 ENSG00000143514 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 236-29 chr7 33336625 33337044 + 1.25 NA intron (NM_198428, intron 10 of 22) intron (NM_198428, intron 10 of 22) 207270 NM_001348040 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 279.25-11 chr2 181640946 181641295 + 1.25 NA intron (NR_027690, intron 1 of 11) intron (NR_027690, intron 1 of 11) 15985 NM_201548 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 418 chr4 42890670 42891271 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger -2296 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 270.75-14 chr2 141726259 141726716 + 1.25 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 405214 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 268.75-15 chr8 57735986 57736306 + 1.25 NA Intergenic L1PA15|LINE|L1 -10003 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 408.5-2 chr4 168230188 168231067 + 1.25 NA intron (NM_017631, intron 33 of 37) L1PB1|LINE|L1 88125 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 173.5-79 chr7 27597640 27597845 + 1.25 NA intron (NM_152740, intron 4 of 7) intron (NM_152740, intron 4 of 7) -18232 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 316-3 chr14 69961535 69961950 + 1.25 NA intron (NM_001034852, intron 3 of 11) L1MB7|LINE|L1 -16391 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 335.5-6 chr5 93677737 93678062 + 1.25 NA intron (NM_032042, intron 10 of 10) intron (NM_032042, intron 10 of 10) -57111 NR_031754 100313887 NR_031754 ENSG00000284336 MIR2277 mir-2277 microRNA 2277 ncRNA 454.25-2 chr6 54740615 54741237 + 1.25 NA Intergenic L1MD1|LINE|L1 -105845 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 271.75 chr10 28980431 28980800 + 1.25 NA Intergenic LTR83|LTR|ERVL 134207 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 240.25-4 chr10 102000622 102000958 + 1.25 NA intron (NM_024541, intron 15 of 25) AluJb|SINE|Alu 55383 NM_024541 79591 Hs.16004 NM_024541 ENSG00000120029 ARMH3 C10orf76 armadillo like helical domain containing 3 protein-coding 193-41 chr4 182370700 182371043 + 1.25 NA intron (NM_001080477, intron 3 of 27) intron (NM_001080477, intron 3 of 27) 127469 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 272.75-3 chr12 1372210 1372546 + 1.25 NA intron (NR_027948, intron 16 of 19) intron (NR_027948, intron 16 of 19) -128113 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 245-10 chr2 21795763 21796118 + 1.25 NA Intergenic Intergenic -85288 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 400 chr16 13307115 13307574 + 1.25 NA Intergenic Intergenic 405746 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 266.5-11 chr3 29688709 29688980 + 1.25 NA intron (NM_001003792, intron 4 of 13) AluSg|SINE|Alu 245312 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 184.75-82 chrX 124388674 124388822 + 1.25 NA intron (NM_014253, intron 27 of 30) intron (NM_014253, intron 27 of 30) 42466 NM_001114937 4068 Hs.349094 NM_002351 ENSG00000183918 SH2D1A DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1 SH2 domain containing 1A protein-coding 419.5 chr14 67310397 67310997 + 1.25 NA intron (NM_001256550, intron 8 of 14) intron (NM_001256550, intron 8 of 14) 49107 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 284.25-12 chr9 13428972 13429246 + 1.25 NA intron (NR_033863, intron 1 of 2) intron (NR_033863, intron 1 of 2) 2220 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 150-79 chr6 148745708 148745851 + 1.25 NA Intergenic Intergenic -1251 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 272.5 chr1 174504138 174504490 + 1.25 NA intron (NM_001366446, intron 13 of 25) L1MC5a|LINE|L1 56350 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 363.75-5 chr19 29521751 29522288 + 1.25 NA intron (NR_040029, intron 1 of 9) intron (NR_040029, intron 1 of 9) 3733 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 337.75-3 chr2 224077154 224077687 + 1.25 NA Intergenic HERVL32-int|LTR|ERVL -38101 NM_001136528 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 236.5-39 chr8 115062841 115063148 + 1.25 NA Intergenic Intergenic 605019 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 324-4 chr4 71777507 71778031 + 1.25 NA intron (NM_000583, intron 1 of 12) intron (NM_000583, intron 1 of 12) 6310 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 248.5-2 chr11 29464231 29464721 + 1.25 NA Intergenic Intergenic -129937 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 227.5-3 chr1 210273658 210273904 + 1.25 NA Intergenic Tigger3b|DNA|TcMar-Tigger -39896 NR_024337 574036 Hs.446946 NR_024337 ENSG00000203706 SERTAD4-AS1 C1orf133 SERTAD4 antisense RNA 1 ncRNA 304.25-8 chr21 20972999 20973377 + 1.25 NA Intergenic Intergenic -25221 NM_001352596 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 309.5-3 chr2 225309897 225310322 + 1.25 NA Intergenic Intergenic -89601 NM_001371273 153.25-111 chr8 78281686 78281921 + 1.25 NA Intergenic Intergenic -234537 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 329.25-4 chr16 17793439 17793745 + 1.25 NA Intergenic Intergenic -322632 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 327.5-2 chr13 86980523 86981003 + 1.25 NA Intergenic L1ME3A|LINE|L1 68843 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 338.75-8 chr8 130256775 130257291 + 1.25 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 39500 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 366.5-4 chr2 171279542 171280057 + 1.25 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -48506 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 283.5-8 chr2 201335536 201335910 + 1.25 NA intron (NR_110620, intron 6 of 13) L1M2|LINE|L1 21622 NR_110620 130540 Hs.107944 NM_139163 ENSG00000155749 FLACC1 ALS2CR12 flagellum associated containing coiled-coil domains 1 protein-coding 236.5-27 chr5 124009386 124009790 + 1.25 NA Intergenic Intergenic 428932 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 334.5-5 chr5 91080750 91081176 + 1.25 NA intron (NR_003149, intron 86 of 89) intron (NR_003149, intron 86 of 89) 233439 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 156-79 chr6 45071726 45071937 + 1.25 NA intron (NM_001350327, intron 2 of 9) intron (NM_001350327, intron 2 of 9) 125939 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 310.5-4 chr22 28260844 28261211 + 1.25 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -198842 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 507 chr7 106388163 106388645 + 1.25 NA Intergenic Intergenic -103421 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 201.5-47 chr4 73455801 73456063 + 1.25 NA 3' UTR (NM_001134, exon 15 of 15) 3' UTR (NM_001134, exon 15 of 15) 19711 NM_001354717 174 Hs.518808 NM_001134 ENSG00000081051 AFP AFPD|FETA|HPAFP alpha fetoprotein protein-coding 304.5-7 chr6 52070455 52070883 + 1.25 NA intron (NM_138694, intron 9 of 66) intron (NM_138694, intron 9 of 66) 16944 NM_138694 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 380.25-3 chr5 114473668 114474083 + 1.25 NA intron (NM_021614, intron 5 of 7) MIR|SINE|MIR 40364 NM_170775 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 183.25-24 chr14 88610971 88611194 + 1.25 NA intron (NR_136936, intron 15 of 15) intron (NR_136936, intron 15 of 15) 16662 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 224.75-48 chrX 84649450 84649872 + 1.25 NA Intergenic L1ME2z|LINE|L1 -147208 NM_001177479 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 197-10 chr17 63128829 63129133 + 1.25 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 162746 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 200.5-23 chr17 68640312 68640593 + 1.25 NA intron (NR_110825, intron 1 of 4) intron (NR_110825, intron 1 of 4) 12298 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 303.75-3 chr15 97924435 97924791 + 1.25 NA Intergenic Intergenic -36090 NM_183376 91947 Hs.6093 NM_183376 ENSG00000140450 ARRDC4 - arrestin domain containing 4 protein-coding 253.75-18 chr20 18697159 18697433 + 1.25 NA intron (NR_109955, intron 1 of 3) intron (NR_109955, intron 1 of 3) 1412 NR_109955 101929526 Hs.639402 NR_109955 ENSG00000233993 LOC101929526 - uncharacterized LOC101929526 ncRNA 253.5-17 chr4 40477399 40477707 + 1.25 NA intron (NM_001098634, intron 2 of 6) intron (NM_001098634, intron 2 of 6) 24566 NR_039966 100616274 NR_039966 ENSG00000263642 MIR4802 - microRNA 4802 ncRNA 216.75-26 chr5 30629326 30629610 + 1.25 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -564218 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 182-15 chr12 88566343 88566494 + 1.25 NA intron (NM_000899, intron 1 of 9) intron (NM_000899, intron 1 of 9) 14053 NM_000899 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 285.75-5 chr5 19906330 19906718 + 1.25 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) -20252 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 181.5-66 chr7 9887660 9887910 + 1.25 NA Intergenic Intergenic 253515 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 161.25-66 chr8 29874737 29874879 + 1.25 NA Intergenic Intergenic -46304 NR_125817 101929470 Hs.204721 NR_125817 ENSG00000248964 LOC101929470 - uncharacterized LOC101929470 ncRNA 440.75 chr12 3680789 3681299 + 1.25 NA intron (NM_001144958, intron 4 of 19) intron (NM_001144958, intron 4 of 19) 72065 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 167-70 chr5 56388438 56388641 + 1.25 NA Intergenic Intergenic 93230 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 213-35 chr8 135191040 135191270 + 1.25 NA Intergenic Intergenic -42976 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 282.75-4 chr2 166302593 166302974 + 1.25 NA TTS (NR_110260) TTS (NR_110260) 73161 NM_001365536 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 359 chr11 99274117 99274498 + 1.25 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 253358 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 299-7 chr8 119385644 119386158 + 1.25 NA Intergenic Intergenic -30545 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 388-2 chr21 14586981 14587464 + 1.25 NA intron (NR_046512, intron 2 of 4) L2|LINE|L2 -3820 NM_001256370 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 266-3 chr10 52648750 52648980 + 1.25 NA intron (NR_155748, intron 1 of 2) Charlie5|DNA|hAT-Charlie 106539 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 167-34 chr18 7911473 7911625 + 1.25 NA intron (NM_002845, intron 4 of 30) L1MB8|LINE|L1 344233 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 178.5-49 chr3 187552152 187552385 + 1.25 NA Intergenic Intergenic 105222 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 264.5-21 chr5 27289424 27289689 + 1.25 NA Intergenic Intergenic -182736 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 233.5-6 chr18 10099285 10099535 + 1.25 NA Intergenic Intergenic 185394 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 155.5-111 chr8 136613839 136614061 + 1.25 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 83152 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 361.75-2 chr2 37606263 37606978 + 1.25 NA Intergenic L1MA9|LINE|L1 65579 NM_006449 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 350-2 chr8 91319101 91319676 + 1.25 NA intron (NM_134266, intron 5 of 18) intron (NM_134266, intron 5 of 18) 70069 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 155.5-64 chr3 94797145 94797422 + 1.25 NA Intergenic L1MEc|LINE|L1 -140980 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 437.5 chr3 187310960 187311508 + 1.25 NA Intergenic Intergenic -19212 NM_001879 5648 Hs.89983 NM_001879 ENSG00000127241 MASP1 3MC1|CRARF|CRARF1|MAP1|MASP|MASP3|MAp44|PRSS5|RaRF mannan binding lectin serine peptidase 1 protein-coding 254.25-16 chr8 38341569 38341913 + 1.25 NA intron (NM_023034, intron 2 of 23) AluJo|SINE|Alu 40530 NM_023034 54904 Hs.434966 NM_017778 ENSG00000147548 NSD3 KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328 nuclear receptor binding SET domain protein 3 protein-coding 311-6 chr5 118249825 118250236 + 1.25 NA intron (NR_104997, intron 2 of 2) L1MA4A|LINE|L1 -32544 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 213.75-42 chr8 130123814 130124016 + 1.25 NA intron (NM_001362925, intron 19 of 29) AluY|SINE|Alu -39147 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 205.75-18 chr11 100097929 100098292 + 1.25 NA intron (NM_001243270, intron 12 of 23) intron (NM_001243270, intron 12 of 23) 541965 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 214.75-11 chr10 20473509 20473743 + 1.25 NA Intergenic Intergenic -78344 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 242.5-20 chr3 3374303 3374608 + 1.25 NA Intergenic L1ME3B|LINE|L1 -194738 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 209.75-45 chr9 115218995 115219297 + 1.25 NA intron (NR_163556, intron 1 of 7) intron (NR_163556, intron 1 of 7) 77328 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 314-3 chr2 77834605 77835163 + 1.25 NA intron (NR_110288, intron 3 of 3) MER50-int|LTR|ERV1 -81050 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 253.5-24 chr7 13775717 13776050 + 1.25 NA Intergenic Intergenic 210631 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 150.5-126 chr9 35921101 35921410 + 1.25 NA Intergenic AluJo|SINE|Alu 11765 NM_001348107 158376 Hs.302677 NM_001348107 ENSG00000235387 SPAAR LINC00961|SPAR small regulatory polypeptide of amino acid response protein-coding 234.75-16 chr2 154567063 154567358 + 1.25 NA Intergenic Intergenic -109772 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 291-2 chr15 73277380 73277803 + 1.25 NA intron (NM_002499, intron 21 of 28) intron (NM_002499, intron 21 of 28) -22319 NR_162148 113219462 NR_162148 MIR12135 - microRNA 12135 ncRNA 326.25-4 chr5 23384377 23384809 + 1.25 NA Intergenic Intergenic -123016 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 200-5 chr10 10288066 10288342 + 1.25 NA Intergenic Intergenic 174145 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 338.75-6 chr20 20025386 20025875 + 1.25 NA intron (NM_016100, intron 2 of 5) intron (NM_016100, intron 2 of 5) 7835 NM_181527 51126 Hs.368783 NM_016100 ENSG00000173418 NAA20 NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1 N(alpha)-acetyltransferase 20, NatB catalytic subunit protein-coding 351.75-2 chr10 76854699 76855191 + 1.25 NA Intergenic L1MEd|LINE|L1 -33099 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 157-72 chr4 142063889 142064106 + 1.25 NA intron (NM_001331040, intron 25 of 25) intron (NM_001331040, intron 25 of 25) 427414 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 339.25-2 chr1 166514763 166515268 + 1.25 NA Intergenic L1MEf|LINE|L1 -24976 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 195.75-14 chr11 38966599 38966814 + 1.25 NA Intergenic Intergenic 317848 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 205.5-6 chr10 105398462 105398799 + 1.25 NA Intergenic Intergenic 421703 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 260-8 chr5 27132976 27133404 + 1.25 NA Intergenic MLT1H2|LTR|ERVL-MaLR -94604 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 177.5-62 chr9 6301978 6302254 + 1.25 NA Intergenic Intergenic -26259 NM_001001874 89882 Hs.351815 NM_033516 ENSG00000170777 TPD52L3 D55|NYDSP25|hD55 TPD52 like 3 protein-coding 332.25 chr10 59253180 59253674 + 1.25 NA intron (NM_001347852, intron 11 of 12) intron (NM_001347852, intron 11 of 12) 75960 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 287.25-15 chr8 134240137 134240557 + 1.25 NA Intergenic Intergenic 353851 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 157.75-35 chr14 43270848 43271016 + 1.25 NA Intergenic Intergenic 1236351 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 381.75 chr4 30793556 30794054 + 1.25 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 73436 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 227-4 chr15 35125563 35125827 + 1.25 NA Intergenic Intergenic -40287 NM_001355281 388112 Hs.635882 NM_001355281 ENSG00000255192 NANOGP8 NANOGP1|PN8 Nanog homeobox retrogene P8 protein-coding 165.5-31 chr14 59262291 59262553 + 1.25 NA intron (NM_001270520, intron 1 of 24) intron (NM_001270520, intron 1 of 24) -1019 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 375-3 chr4 59307346 59307833 + 1.25 NA Intergenic Intergenic 294016 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 406-2 chr14 50868704 50869455 + 1.25 NA Intergenic L1MB7|LINE|L1 -2974 NM_001206673 145447 Hs.271896 NM_181533 ENSG00000131969 ABHD12B BEM46L3|C14orf29|c14_5314 abhydrolase domain containing 12B protein-coding 245.5-21 chr3 50769109 50769363 + 1.25 NA intron (NM_004947, intron 1 of 52) L1MA6|LINE|L1 94156 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 194.5-53 chr6 141803706 141803942 + 1.25 NA Intergenic L1M1|LINE|L1 284975 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 237.25-10 chr2 70377166 70377598 + 1.25 NA Intergenic Intergenic -75315 NM_001329752 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 333.75-5 chr7 8998465 8999152 + 1.25 NA Intergenic Intergenic 565199 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 221.25-22 chr3 98464226 98464438 + 1.25 NA Intergenic Intergenic -5148 NM_001004736 26339 Hs.621533 NM_001004736 ENSG00000232382 OR5K1 HSHTPCRX10|HTPCRX10|OR3-8 olfactory receptor family 5 subfamily K member 1 protein-coding 323.75-2 chr1 91226128 91226457 + 1.25 NA Intergenic LTR8|LTR|ERV1 178545 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 371.75 chr2 57358751 57359314 + 1.25 NA Intergenic Intergenic -548619 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 202.25-58 chr8 115345136 115345439 + 1.25 NA Intergenic Intergenic 322726 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 206-7 chr14 20992289 20992493 + 1.25 NA intron (NM_022734, intron 4 of 13) intron (NM_022734, intron 4 of 13) 2411 NM_001029991 64745 Hs.512693 NM_022734 ENSG00000165792 METTL17 METT11D1 methyltransferase like 17 protein-coding 206.25-38 chr6 164697511 164697741 + 1.25 NA Intergenic L1ME3A|LINE|L1 124437 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 400.25 chr20 56405787 56406349 + 1.25 NA 3' UTR (NM_001033522, exon 6 of 6) 3' UTR (NM_001033522, exon 6 of 6) -5968 NM_001164116 57091 Hs.473144 NM_020356 ENSG00000087589 CASS4 C20orf32|CAS4|HEFL|HEPL Cas scaffold protein family member 4 protein-coding 256.75-14 chr2 183667096 183667317 + 1.25 NA Intergenic Intergenic 542763 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 340-3 chr5 134951647 134952075 + 1.25 NA intron (NM_032151, intron 2 of 3) L1ME4b|LINE|L1 -16046 NM_178019 347732 Hs.631804 NM_178019 ENSG00000152705 CATSPER3 CACRC cation channel sperm associated 3 protein-coding 186.75-63 chr4 59173747 59173965 + 1.25 NA Intergenic L2|LINE|L2 160283 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 386.5-5 chr8 81946699 81947127 + 1.25 NA Intergenic Intergenic -104627 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 296.25-2 chr1 218903425 218904230 + 1.25 NA intron (NR_031644, intron 6 of 6) L1PA10|LINE|L1 14684 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 249.25-20 chr7 31333932 31334287 + 1.25 NA Intergenic Intergenic 6617 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 356.25-4 chr4 86685582 86686376 + 1.25 NA intron (NM_080685, intron 3 of 47) L1MC4a|LINE|L1 91664 NM_080685 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 225-27 chr8 79578884 79579272 + 1.25 NA Intergenic Intergenic -32039 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 223.25-17 chr3 47315406 47315654 + 1.25 NA intron (NM_025010, intron 1 of 9) HAL1|LINE|L1 32586 NM_025010 23276 Hs.517946 NM_025010 ENSG00000114648 KLHL18 - kelch like family member 18 protein-coding 220.75-19 chr2 172466867 172467215 + 1.25 NA intron (NM_001365530, intron 2 of 25) intron (NM_001365530, intron 2 of 25) -1019 NR_157573 101929947 Hs.710861 NR_157573 ITGA6-AS1 - ITGA6 antisense RNA 1 ncRNA 325.75 chr10 110652165 110652589 + 1.25 NA intron (NM_001134363, intron 1 of 13) L1ME4a|LINE|L1 8041 NM_001134363 282996 Hs.116630 NM_001134363 ENSG00000203867 RBM20 - RNA binding motif protein 20 protein-coding 262.5-11 chr18 68685792 68686157 + 1.25 NA intron (NM_019022, intron 10 of 15) intron (NM_019022, intron 10 of 15) 29134 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 368.25-3 chr4 93094573 93095186 + 1.25 NA intron (NM_001510, intron 3 of 15) intron (NM_001510, intron 3 of 15) -733874 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 187.25-40 chr3 17745281 17745477 + 1.25 NA non-coding (NR_135536, exon 2 of 2) non-coding (NR_135536, exon 2 of 2) 2435 NR_135536 105376975 Hs.543238 NR_135536 LOC105376975 - uncharacterized LOC105376975 ncRNA 302.5-6 chr18 66906288 66906716 + 1.25 NA Intergenic Intergenic -175082 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 349-4 chr4 89487686 89488361 + 1.25 NA Intergenic Intergenic -180223 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 235-6 chr10 116428545 116428824 + 1.25 NA intron (NM_001011709, intron 1 of 11) intron (NM_001011709, intron 1 of 11) 837 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 235-11 chr2 28098852 28099312 + 1.25 NA intron (NM_199193, intron 7 of 13) MamRep605|LTR?|LTR? 102715 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 214.5-39 chr5 8116927 8117307 + 1.25 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 247969 NM_001364441 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 191.75-31 chr2 68981734 68982036 + 1.25 NA TTS (NM_019617) TTS (NM_019617) 7312 NM_019617 56287 Hs.69319 NM_019617 ENSG00000169605 GKN1 AMP18|BRICD1|CA11|FOV|foveolin gastrokine 1 protein-coding 227-11 chr20 60521662 60522056 + 1.25 NA Intergenic L1M4c|LINE|L1 -42703 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 326-6 chr8 77499929 77500457 + 1.25 NA Intergenic Intergenic 49496 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 295.5-3 chr2 28971890 28972383 + 1.25 NA Intergenic AluSx|SINE|Alu -9162 NM_001321538 165186 Hs.525977 NM_199280 ENSG00000189350 TOGARAM2 FAM179A TOG array regulator of axonemal microtubules 2 protein-coding 160.75-80 chr4 62750501 62750701 + 1.25 NA Intergenic Intergenic -588836 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 336.25-6 chr3 96965629 96966304 + 1.25 NA intron (NM_001080448, intron 2 of 17) L1ME5|LINE|L1 151372 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 377.5 chr5 17828856 17829279 + 1.25 NA intron (NR_134286, intron 2 of 7) Charlie29a|DNA|hAT-Charlie 21793 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 359-4 chr9 26993148 26993661 + 1.25 NA 3' UTR (NM_022901, exon 5 of 5) 3' UTR (NM_022901, exon 5 of 5) 12268 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 360.75-3 chr18 1738311 1738667 + 1.25 NA Intergenic Intergenic -378860 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 261-17 chr8 56568089 56568378 + 1.25 NA Intergenic L1MC5a|LINE|L1 -8410 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 320.75-6 chr15 61176446 61176896 + 1.25 NA intron (NM_134261, intron 1 of 10) MIRb|SINE|MIR 52631 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 190-6 chr10 44628534 44628729 + 1.25 NA Intergenic Intergenic -243534 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 146.5-25 chr14 33636510 33636645 + 1.25 NA intron (NM_001165893, intron 4 of 10) intron (NM_001165893, intron 4 of 10) -72360 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 288-9 chr5 85702434 85702700 + 1.25 NA Intergenic Intergenic -579877 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 309.25-6 chr4 78817106 78817612 + 1.25 NA intron (NM_017593, intron 1 of 13) MER21C|LTR|ERVL 40981 NM_198892 55589 Hs.146551 NM_017593 ENSG00000138756 BMP2K BIKE|HRIHFB2017 BMP2 inducible kinase protein-coding 285.5-14 chr5 171692725 171693199 + 1.25 NA Intergenic Intergenic -92910 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 278-6 chr4 26737645 26737935 + 1.25 NA intron (NM_001292054, intron 13 of 17) intron (NM_001292054, intron 13 of 17) 122454 NR_134675 105374546 Hs.548859 NR_134673 STIM2-AS1 - STIM2 antisense RNA 1 ncRNA 226.75-8 chr14 57296001 57296304 + 1.25 NA non-coding (NR_026895, exon 7 of 7) non-coding (NR_026895, exon 7 of 7) 27181 NR_026895 55745 Hs.597349 NM_018229 ENSG00000053770 AP5M1 C14orf108|MUDENG|Mu5|MuD adaptor related protein complex 5 subunit mu 1 protein-coding 261.5-2 chr10 107426346 107426627 + 1.25 NA Intergenic Intergenic -261780 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 266.75-2 chr10 13903176 13903518 + 1.25 NA intron (NM_018027, intron 2 of 24) L2a|LINE|L2 68549 NM_001318337 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 191.25-60 chr6 96899157 96899463 + 1.25 NA 5' UTR (NM_001323258, exon 1 of 8) 5' UTR (NM_001323258, exon 1 of 8) 1227 NM_001323258 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 206.5-23 chr21 16094305 16094586 + 1.25 NA intron (NR_111005, intron 1 of 6) intron (NR_111005, intron 1 of 6) 23331 NR_111004 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 160.5-43 chr17 53375871 53376110 + 1.25 NA Intergenic L1PA16|LINE|L1 390485 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 428.5 chr17 38946268 38946899 + 1.25 NA intron (NM_001008777, intron 6 of 10) intron (NM_001008777, intron 6 of 10) 20820 NM_001008777 494188 Hs.549536 NM_001008777 ENSG00000204952 FBXO47 - F-box protein 47 protein-coding 376.5 chr13 56460229 56460662 + 1.25 NA Intergenic Intergenic -680473 NM_001130407 729250 Hs.525056 NM_001130407 ENSG00000234278 PRR20E PRR20|PRR20A|PRR20B|PRR20C|PRR20D proline rich 20E protein-coding 249.25-9 chr2 49454893 49455282 + 1.25 NA Intergenic Intergenic -300560 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 163.5-117 chr8 135099562 135099876 + 1.25 NA Intergenic L1MA8|LINE|L1 -134412 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 175.75-67 chr9 29867625 29867881 + 1.25 NA Intergenic A-rich|Low_complexity|Low_complexity 540701 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 540.75 chr2 24231891 24232550 + 1.25 NA intron (NM_001348182, intron 28 of 38) Tigger10|DNA|TcMar-Tigger 57167 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 190.5-14 chr14 22402319 22402625 + 1.25 NA intron (NR_148362, intron 2 of 5) intron (NR_148362, intron 2 of 5) 30281 NR_148362 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 246.25-18 chr18 12958666 12958882 + 1.25 NA intron (NM_031216, intron 3 of 8) L1MB4|LINE|L1 10763 NM_001013437 81929 Hs.301048 NM_031216 ENSG00000085415 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1 like nucleoporin protein-coding 313.5-3 chr12 62193457 62193949 + 1.25 NA promoter-TSS (NM_178539) promoter-TSS (NM_178539) -864 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 187-21 chr2 122072613 122072802 + 1.25 NA Intergenic Intergenic 317056 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 326 chr11 18277170 18277538 + 1.25 NA Intergenic Intergenic 11090 NM_199161 6288 Hs.632144 NM_000331 ENSG00000173432 SAA1 PIG4|SAA|SAA2|TP53I4 serum amyloid A1 protein-coding 276-4 chr2 16144097 16144533 + 1.25 NA Intergenic (TATATAA)n|Simple_repeat|Simple_repeat 93888 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 263-8 chr2 21301664 21301985 + 1.25 NA Intergenic MIR1_Amn|SINE|MIR 177838 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 237.5-27 chr5 53171670 53171884 + 1.25 NA Intergenic Intergenic 61935 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 179-28 chr2 83899162 83899318 + 1.25 NA Intergenic MLT1A|LTR|ERVL-MaLR 376426 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 189.5-69 chr8 73025028 73025209 + 1.25 NA intron (NM_017489, intron 5 of 9) intron (NM_017489, intron 5 of 9) 16254 NM_003218 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 224.25-22 chr2 186667721 186667957 + 1.25 NA intron (NM_001145000, intron 22 of 27) intron (NM_001145000, intron 22 of 27) -26221 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 183.75-32 chr15 95088736 95089045 + 1.25 NA Intergenic L1MA8|LINE|L1 233527 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 307-6 chr8 127684765 127685101 + 1.25 NA Intergenic Intergenic 49034 NR_117101 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 356-2 chr3 94126418 94126749 + 1.25 NA 3' UTR (NM_022072, exon 6 of 6) 3' UTR (NM_022072, exon 6 of 6) 63522 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 297.75-15 chr6 65706919 65707289 + 1.25 NA intron (NM_001292009, intron 1 of 43) intron (NM_001292009, intron 1 of 43) 121 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 163.25-59 chr5 83007848 83008039 + 1.25 NA Intergenic L2|LINE|L2 56394 NR_003139 677765 Hs.693283 NR_003139 ENSG00000238835 SCARNA18 SCARNA18A|U109 small Cajal body-specific RNA 18 ncRNA 208-30 chr5 159325650 159325896 + 1.25 NA intron (NM_002187, intron 2 of 7) MIRb|SINE|MIR 4700 NM_002187 3593 Hs.674 NM_002187 ENSG00000113302 IL12B CLMF|CLMF2|IL-12B|IMD28|IMD29|NKSF|NKSF2 interleukin 12B protein-coding 408.25-3 chr3 174445864 174446444 + 1.25 NA Intergenic Intergenic -413180 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 270.75-27 chr8 8428942 8429313 + 1.25 NA Intergenic Intergenic -42688 NM_001080826 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 269.25-7 chr14 43613720 43614148 + 1.25 NA Intergenic HERV4_I-int|LTR|ERV1 893349 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 442.25 chr10 115773255 115773716 + 1.25 NA intron (NM_207303, intron 27 of 28) intron (NM_207303, intron 27 of 28) 421304 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 315.5-5 chr15 57446547 57446865 + 1.25 NA intron (NM_032866, intron 4 of 18) L1ME3|LINE|L1 70201 NM_032866 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 309.25-5 chr3 21574378 21574672 + 1.25 NA intron (NM_024697, intron 2 of 7) L1MC5|LINE|L1 31736 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 242.25-21 chr7 79649288 79649602 + 1.25 NA Intergenic L1M8|LINE|L1 195485 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 245.75-16 chr6 125912802 125913112 + 1.25 NA intron (NM_001199621, intron 9 of 14) L1ME4b|LINE|L1 -6298 NM_001199622 135112 Hs.171426 NM_181782 ENSG00000111912 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 205.75-53 chr7 33798345 33798636 + 1.25 NA Intergenic Intergenic -106425 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 320.5-11 chr8 123126120 123126740 + 1.25 NA intron (NM_001363149, intron 12 of 21) intron (NM_001363149, intron 12 of 21) -52617 NM_207006 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 436.25-2 chr2 162777861 162778556 + 1.25 NA intron (NR_110258, intron 2 of 4) intron (NR_110258, intron 2 of 4) 9272 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 248.25-14 chr4 62025288 62025600 + 1.25 NA intron (NM_001371343, intron 20 of 23) intron (NM_001371343, intron 20 of 23) 136321 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 235.5-2 chr1 86170512 86170929 + 1.25 NA Intergenic Intergenic -13736 NR_146340 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 166.75-15 chr11 17980613 17980825 + 1.25 NA intron (NR_104040, intron 8 of 11) L1ME4a|LINE|L1 32328 NR_104040 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 192.25-35 chr2 79704151 79704425 + 1.25 NA intron (NM_001282598, intron 2 of 17) intron (NM_001282598, intron 2 of 17) -54929 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 289-3 chr17 53560941 53561542 + 1.25 NA Intergenic L1MB8|LINE|L1 -261686 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 272.75-10 chr2 99605085 99605388 + 1.25 NA intron (NM_001025108, intron 12 of 23) intron (NM_001025108, intron 12 of 23) -115219 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 246.25-38 chr8 99156690 99157006 + 1.25 NA intron (NM_017890, intron 15 of 61) intron (NM_017890, intron 15 of 61) 143582 NM_015243 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 246-6 chr2 86637394 86637674 + 1.25 NA intron (NM_001198954, intron 2 of 7) intron (NM_001198954, intron 2 of 7) -13657 NM_001198951 7844 Hs.469199 NM_005667 ENSG00000239305 RNF103 HKF-1|KF-1|KF1|ZFP-103|ZFP103 ring finger protein 103 protein-coding 319.25-9 chr8 131956829 131957436 + 1.25 NA intron (NR_136616, intron 7 of 23) (ATTA)n|Simple_repeat|Simple_repeat 40359 NM_001323557 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 189.5-27 chr2 6586753 6587084 + 1.25 NA Intergenic Intergenic 46869 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 262.75-22 chr7 119945240 119945643 + 1.25 NA Intergenic Intergenic -38066 NR_131962 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 211.75-21 chr3 189002318 189002673 + 1.25 NA Intergenic Intergenic -54856 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 397.5-7 chr8 131469408 131469847 + 1.25 NA Intergenic L1MEc|LINE|L1 -428718 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 183.5-49 chr4 35002095 35002392 + 1.25 NA Intergenic L1ME1|LINE|L1 -732496 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 347.25-4 chr2 200983012 200983398 + 1.25 NA intron (NM_001321619, intron 11 of 11) intron (NM_001321619, intron 11 of 11) -19545 NM_006190 4999 Hs.444870 NM_006190 ENSG00000115942 ORC2 ORC2L origin recognition complex subunit 2 protein-coding 515.75 chr6 104828113 104828826 + 1.25 NA intron (NR_146792, intron 6 of 24) intron (NR_146792, intron 6 of 24) 31077 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 339.75-2 chr3 68772936 68773271 + 1.25 NA intron (NM_001005527, intron 3 of 5) intron (NM_001005527, intron 3 of 5) 159444 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 336.25-8 chr9 24782004 24782413 + 1.25 NA Intergenic Intergenic -236311 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 188-25 chr17 14118859 14119210 + 1.25 NA intron (NM_001303, intron 4 of 6) L1M6|LINE|L1 49530 NM_001303 1352 Hs.462278 NM_001303 ENSG00000006695 COX10 - cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 protein-coding 213.5-41 chr7 36484795 36485086 + 1.25 NA Intergenic Tigger13a|DNA|TcMar-Tigger -94583 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 248.25-6 chr2 8382297 8382582 + 1.25 NA Intergenic Intergenic -54020 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 402.25-3 chr3 17733948 17734393 + 1.25 NA intron (NM_001349076, intron 1 of 22) L1M5|LINE|L1 6737 NM_014744 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 228.25-20 chr22 24783630 24783951 + 1.25 NA Intergenic L1MEf|LINE|L1 -9070 NM_001008496 440822 Hs.448343 NM_001008496 ENSG00000184571 PIWIL3 HIWI3 piwi like RNA-mediated gene silencing 3 protein-coding 461.75 chr1 80402043 80402736 + 1.25 NA Intergenic Intergenic -133366 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 191.25-18 chr11 88554890 88555174 + 1.25 NA intron (NM_001143831, intron 7 of 8) MIRb|SINE|MIR 50456 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 299.75-2 chr2 135009486 135009736 + 1.25 NA intron (NM_001321177, intron 2 of 9) intron (NM_001321177, intron 2 of 9) 14038 NM_001321177 80122 Hs.659395 NM_025052 ENSG00000176601 MAP3K19 RCK|YSK4 mitogen-activated protein kinase kinase kinase 19 protein-coding 347.25-9 chr8 101210514 101211133 + 1.25 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -4759 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 181.5-22 chr14 41750522 41750752 + 1.25 NA intron (NM_001346173, intron 1 of 4) THE1D|LTR|ERVL-MaLR 143781 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 317.5-3 chr3 180642284 180642759 + 1.25 NA intron (NM_181426, intron 12 of 19) intron (NM_181426, intron 12 of 19) 36968 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 182.25-26 chr2 141684999 141685175 + 1.25 NA intron (NM_018557, intron 2 of 90) MLT1D-int|LTR|ERVL-MaLR 446614 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 296.5-18 chr7 114163246 114163488 + 1.25 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 77040 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 291.25-7 chr4 73306763 73307331 + 1.25 NA Intergenic MamRep605|LTR?|LTR? -48249 NM_198889 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 346.25-4 chr8 128500319 128500926 + 1.25 NA intron (NR_121672, intron 2 of 7) MIR|SINE|MIR 64057 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 172-66 chr5 33343847 33344102 + 1.25 NA Intergenic Intergenic -96722 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 213.5-37 chr5 133619665 133620082 + 1.25 NA Intergenic Charlie21a|DNA|hAT-Charlie -7332 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 209.5-7 chr12 7243415 7243703 + 1.25 NA Intergenic L1ME2z|LINE|L1 53197 NM_000319 5830 Hs.567327 NM_000319 ENSG00000139197 PEX5 PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5 peroxisomal biogenesis factor 5 protein-coding 170.25-27 chr2 43892711 43892926 + 1.25 NA intron (NM_133259, intron 36 of 37) Tigger1|DNA|TcMar-Tigger 53847 NM_022437 64241 Hs.413931 NM_022437 ENSG00000143921 ABCG8 GBD4|STSL ATP binding cassette subfamily G member 8 protein-coding 183.25-21 chr14 45723430 45723604 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger -7915 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 300.25 chr1 15973217 15973641 + 1.25 NA intron (NM_001287603, intron 1 of 15) intron (NM_001287603, intron 1 of 15) 2703 NM_001287603 7709 Hs.433764 NM_003443 ENSG00000116809 ZBTB17 MIZ-1|ZNF151|ZNF60|pHZ-67 zinc finger and BTB domain containing 17 protein-coding 259-13 chr9 37528550 37528809 + 1.25 NA intron (NM_012166, intron 5 of 10) MER117|DNA|hAT-Charlie 42731 NM_022490 64425 Hs.591087 NM_022490 ENSG00000137054 POLR1E PAF53|PRAF1 RNA polymerase I subunit E protein-coding 289.75-5 chr12 31903883 31904316 + 1.25 NA Intergenic Intergenic -16896 NR_135029 105369723 Hs.736954 NR_135029 ENSG00000255760 LINC02422 - long intergenic non-protein coding RNA 2422 ncRNA 156.75-53 chr2 123224996 123225200 + 1.25 NA Intergenic L1M1|LINE|L1 -151617 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 398.25-2 chr8 76265471 76266001 + 1.25 NA Intergenic Intergenic -140918 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 348.75-7 chr3 69417374 69417837 + 1.25 NA Intergenic L1PA8|LINE|L1 -31517 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 277-10 chr6 52068136 52068485 + 1.25 NA intron (NM_138694, intron 11 of 66) intron (NM_138694, intron 11 of 66) 19303 NM_138694 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 236-33 chr8 81655999 81656239 + 1.25 NA TTS (NM_001144879) TTS (NM_001144879) -24842 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 382.25 chr12 40008725 40009368 + 1.25 NA intron (NM_052885, intron 3 of 9) L1ME3G|LINE|L1 97035 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 333 chr6 121942001 121942599 + 1.25 NA Intergenic L1M4|LINE|L1 -457251 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 201.25-32 chr21 32356915 32357123 + 1.25 NA intron (NM_014825, intron 15 of 38) intron (NM_014825, intron 15 of 38) 20303 NR_002996 677846 Hs.712293 NR_002996 ENSG00000200792 SNORA80A ACA67|SNORA80 small nucleolar RNA, H/ACA box 80A snoRNA 200-33 chr4 21927851 21928078 + 1.25 NA intron (NM_147182, intron 1 of 8) MIRb|SINE|MIR 20787 NM_147182 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 198.25-19 chr2 56043605 56043825 + 1.25 NA intron (NR_126406, intron 1 of 2) intron (NR_126406, intron 1 of 2) 3611 NR_126406 104355290 Hs.580331 NR_126406 MIR217HG MIR216AHG|MIR216BHG MIR217 host gene ncRNA 520.75-2 chr2 183717462 183718595 + 1.25 NA Intergenic Intergenic 593585 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 253-10 chr7 4352897 4353260 + 1.25 NA Intergenic L1MB3|LINE|L1 -218241 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 415.5-2 chr6 162577971 162578557 + 1.25 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -148868 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 287-6 chr20 19833381 19833825 + 1.25 NA Intergenic Intergenic -52918 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 216.75-29 chr7 12763176 12763498 + 1.25 NA Intergenic Intergenic 75704 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 224.5-9 chr13 26044753 26044991 + 1.25 NA 3' UTR (NM_001007538, exon 2 of 2) 3' UTR (NM_001007538, exon 2 of 2) 6188 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 317.75 chr15 57689022 57689731 + 1.25 NA intron (NR_104371, intron 12 of 16) (TA)n|Simple_repeat|Simple_repeat -17145 NM_001018102 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 329-3 chr13 37426319 37426731 + 1.25 NA Intergenic L1M1|LINE|L1 58259 NR_125762 103695431 Hs.550637 NR_125762 ENSG00000230390 LINC01048 - long intergenic non-protein coding RNA 1048 ncRNA 206.5-36 chr5 82086739 82086947 + 1.25 NA intron (NM_031482, intron 3 of 7) intron (NM_031482, intron 3 of 7) 114820 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 228.75-5 chr12 125467520 125467784 + 1.25 NA intron (NM_052907, intron 3 of 8) L1MB5|LINE|L1 141036 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 282-4 chr12 129880758 129881165 + 1.25 NA intron (NM_133448, intron 1 of 8) L1ME1|LINE|L1 23064 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 229.5-19 chr20 34300512 34300757 + 1.25 NA intron (NM_001161766, intron 1 of 9) intron (NM_001161766, intron 1 of 9) 2356 NM_001322086 191 Hs.388004 NM_000687 ENSG00000101444 AHCY SAHH|adoHcyase adenosylhomocysteinase protein-coding 174.25-19 chr15 37605164 37605357 + 1.25 NA Intergenic L1ME3C|LINE|L1 -329347 NM_152453 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 337.75 chr12 106317632 106318035 + 1.25 NA intron (NM_152772, intron 3 of 9) intron (NM_152772, intron 3 of 9) 15100 NM_001286262 255394 Hs.696047 NM_152772 ENSG00000166046 TCP11L2 - t-complex 11 like 2 protein-coding 280.75-14 chr5 51372965 51373245 + 1.25 NA non-coding (NR_046243, exon 2 of 2) non-coding (NR_046243, exon 2 of 2) 10227 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 386.75-2 chr3 120264517 120264874 + 1.25 NA Intergenic Intergenic -20400 NM_001168271 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 250.25-19 chr3 77077822 77078110 + 1.25 NA intron (NM_001290039, intron 1 of 26) intron (NM_001290039, intron 1 of 26) -20046 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 270 chr1 246229638 246230112 + 1.25 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 187537 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 221-21 chr3 166246897 166247148 + 1.25 NA Intergenic Intergenic -409599 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 322.5-7 chr2 58867642 58868069 + 1.25 NA intron (NR_033873, intron 3 of 13) MER39|LTR|ERV1 347102 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 282-12 chr9 68801109 68801549 + 1.25 NA intron (NM_003558, intron 2 of 15) intron (NM_003558, intron 2 of 15) 21264 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 284.5-4 chr16 76311891 76312238 + 1.25 NA intron (NM_138994, intron 1 of 22) intron (NM_138994, intron 1 of 22) 2212 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 275-22 chrX 92243388 92243695 + 1.25 NA intron (NM_032969, intron 3 of 5) L1MD2|LINE|L1 408080 NM_001168361 27328 Hs.655673 NM_014522 ENSG00000102290 PCDH11X PCDH-X|PCDH-Y|PCDH11|PCDH11Y|PCDH22|PCDHX|PPP1R119 protocadherin 11 X-linked protein-coding 250-15 chr8 84410475 84410946 + 1.25 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -4774 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 157.25-106 chr8 120749296 120749492 + 1.25 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -11859 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 215.25-17 chr18 33398573 33398953 + 1.25 NA intron (NM_001308126, intron 3 of 23) Tigger1|DNA|TcMar-Tigger 41808 NM_001371121 276.25-17 chr9 82230246 82230646 + 1.25 NA Intergenic L1M2|LINE|L1 241674 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 216.75-25 chr4 160072359 160072646 + 1.25 NA Intergenic Intergenic -294718 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 337.5-3 chr10 23632865 23633227 + 1.25 NA Intergenic L1M4|LINE|L1 -61681 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 233.75-14 chr21 14594388 14594630 + 1.25 NA intron (NM_001256579, intron 5 of 6) intron (NM_001256579, intron 5 of 6) -11107 NM_001256370 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 238.5-30 chr4 185500428 185500707 + 1.25 NA TTS (NM_001257963) TTS (NM_001257963) -28834 NM_152775 256309 Hs.41101 NM_152775 ENSG00000168491 CCDC110 CT52|KM-HN-1|KMHN1 coiled-coil domain containing 110 protein-coding 237.25-12 chr3 34554261 34554544 + 1.25 NA Intergenic (TTTCTT)n|Simple_repeat|Simple_repeat 755772 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 167.75-91 chr8 88045862 88046172 + 1.25 NA intron (NM_005941, intron 9 of 9) L1M6|LINE|L1 -172002 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 349.5-4 chr9 33947328 33947927 + 1.25 NA intron (NR_163243, intron 9 of 24) AluJb|SINE|Alu 5227 NR_003685 100113379 NR_003685 ENSG00000238886 SNORD121A - small nucleolar RNA, C/D box 121A snoRNA 298.5-4 chr14 52432244 52432710 + 1.25 NA exon (NM_020784, exon 21 of 21) exon (NM_020784, exon 21 of 21) 118165 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 185.25-24 chr15 27287172 27287464 + 1.25 NA intron (NM_001270873, intron 3 of 5) L1ME3Cz|LINE|L1 -125999 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 294.5-4 chr20 39507157 39507604 + 1.25 NA Intergenic L1MDa|LINE|L1 -282632 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 232.75-9 chr14 54172173 54172401 + 1.25 NA Intergenic Intergenic -215396 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 352.25-3 chr5 65264089 65264502 + 1.25 NA intron (NR_135689, intron 13 of 25) L2b|LINE|L2 217625 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 308.75-9 chr6 119775207 119775719 + 1.25 NA intron (NR_134600, intron 2 of 3) L2a|LINE|L2 225655 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 289.25-21 chr8 132759041 132759483 + 1.25 NA intron (NM_144649, intron 1 of 9) intron (NM_144649, intron 1 of 9) 1320 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 268-17 chr7 16780135 16780543 + 1.25 NA intron (NM_014399, intron 5 of 5) AluSz|SINE|Alu 24660 NM_006408 10551 Hs.530009 NM_006408 ENSG00000106541 AGR2 AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|XAG-2 anterior gradient 2, protein disulphide isomerase family member protein-coding 199.5-40 chr4 88360034 88360304 + 1.25 NA Intergenic MER45B|DNA|hAT-Tip100 -18570 NM_001165136 55008 Hs.529317 NM_017912 ENSG00000138642 HERC6 - HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 protein-coding 277-3 chr2 106891054 106891647 + 1.25 NA Intergenic MIR|SINE|MIR -4241 NM_001142352 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 297-5 chr22 33142598 33143031 + 1.25 NA Intergenic Intergenic 34285 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 231-17 chr4 85481752 85482081 + 1.25 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 6766 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 249.5-31 chr9 27869066 27869355 + 1.25 NA Intergenic L2c|LINE|L2 -295344 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 257.25-22 chr5 164653052 164653351 + 1.25 NA Intergenic L1ME1|LINE|L1 182922 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 168.25-51 chr4 92713338 92713477 + 1.25 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 409008 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 154.75-73 chr4 56266562 56266861 + 1.25 NA intron (NM_020722, intron 2 of 10) intron (NM_020722, intron 2 of 10) 96516 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 180.25-68 chr7 41967197 41967463 + 1.25 NA intron (NM_000168, intron 14 of 14) intron (NM_000168, intron 14 of 14) -264240 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 159.25-21 chr14 62826000 62826196 + 1.25 NA intron (NM_139318, intron 8 of 10) intron (NM_139318, intron 8 of 10) 219360 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 223.75-14 chr2 179725823 179726323 + 1.25 NA intron (NM_001352815, intron 1 of 8) intron (NM_001352815, intron 1 of 8) 19593 NM_001352813 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 282.75 chr1 102179896 102180190 + 1.25 NA Intergenic L1MC|LINE|L1 -182809 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 167.25-64 chr5 128622813 128623065 + 1.25 NA Intergenic Intergenic -84694 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 289.75-20 chr9 74869876 74870234 + 1.25 NA intron (NM_017662, intron 1 of 38) intron (NM_017662, intron 1 of 38) 17292 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 195.5-14 chr12 128182452 128182636 + 1.25 NA Intergenic Intergenic 64327 NR_104648 101927694 Hs.524849 NR_104648 ENSG00000256659 LINC02368 - long intergenic non-protein coding RNA 2368 ncRNA 188-9 chr1 220463990 220464220 + 1.25 NA Intergenic MLT1A0|LTR|ERVL-MaLR -64031 NM_001286128 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 254.5-24 chr5 69004412 69004687 + 1.25 NA intron (NR_130778, intron 1 of 3) intron (NR_130778, intron 1 of 3) 25378 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 274.5 chr1 45103928 45104499 + 1.25 NA intron (NM_020883, intron 1 of 13) intron (NM_020883, intron 1 of 13) 91959 NR_036510 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 366.25-2 chr14 66150441 66150862 + 1.25 NA Intergenic L1PA15|LINE|L1 -335720 NR_110307 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 223.25-11 chr18 66312557 66312757 + 1.25 NA Intergenic Intergenic 291433 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 416.25 chr8 46866011 46866648 + 1.25 NA Intergenic Intergenic 25443 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 257.75-2 chr10 77444356 77444693 + 1.25 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 93652 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 180.5-29 chr18 5827120 5827422 + 1.25 NA Intergenic Intergenic -13424 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 222-11 chr19 32356188 32356481 + 1.25 NA intron (NM_001136156, intron 3 of 6) intron (NM_001136156, intron 3 of 6) 10724 NM_014910 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 358.25-3 chr6 112837889 112838264 + 1.25 NA Intergenic Intergenic 490746 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 234.5-25 chr7 104160678 104160885 + 1.25 NA intron (NM_002553, intron 12 of 13) intron (NM_002553, intron 12 of 13) 47232 NM_002553 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 242-18 chr4 159051509 159051736 + 1.25 NA Intergenic Intergenic -16393 NM_152543 152940 Hs.415576 NM_152543 ENSG00000164123 C4orf45 - chromosome 4 open reading frame 45 protein-coding 236.25-30 chr6 126814693 126814888 + 1.25 NA Intergenic Intergenic -303881 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 241.25-2 chr1 163472385 163472749 + 1.25 NA Intergenic Intergenic -49376 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 301.5-9 chr3 83388412 83388706 + 1.25 NA Intergenic Intergenic 1402417 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 211.75 chr1 42571556 42571941 + 1.25 NA intron (NM_001080850, intron 7 of 16) intron (NM_001080850, intron 7 of 16) 38728 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 163.25-32 chr18 1934325 1934579 + 1.25 NA Intergenic Tigger2a|DNA|TcMar-Tigger -574823 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 297.25-8 chr7 22660688 22661127 + 1.25 NA intron (NR_122075, intron 2 of 4) LTR16|LTR|ERVL 4626 NR_122075 401312 Hs.583393 NR_122075 ENSG00000105889 LOC401312 - uncharacterized LOC401312 ncRNA 249.25-21 chr7 83902409 83902671 + 1.25 NA Intergenic Intergenic -253401 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 259.75-11 chr2 127195630 127195954 + 1.25 NA intron (NM_001001665, intron 4 of 7) intron (NM_001001665, intron 4 of 7) 9975 NM_001001665 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 230-17 chr2 171959084 171959342 + 1.25 NA intron (NR_027862, intron 3 of 9) intron (NR_027862, intron 3 of 9) 36752 NM_003642 8520 Hs.632532 NM_003642 ENSG00000128708 HAT1 KAT1 histone acetyltransferase 1 protein-coding 320-7 chr5 122227156 122227550 + 1.25 NA Intergenic Intergenic 67177 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 225-13 chr4 48247746 48248027 + 1.25 NA intron (NM_003215, intron 1 of 17) intron (NM_003215, intron 1 of 17) 21952 NM_003215 7006 Hs.479670 NM_003215 ENSG00000135605 TEC PSCTK4 tec protein tyrosine kinase protein-coding 399.25-3 chr5 118813020 118813532 + 1.25 NA Intergenic AluJb|SINE|Alu -161310 NR_036052 100302285 NR_036052 ENSG00000284378 MIR1244-1 MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1 microRNA 1244-1 ncRNA 266.75-5 chr12 119805300 119805879 + 1.25 NA intron (NM_007174, intron 9 of 46) intron (NM_007174, intron 9 of 46) 71731 NM_001206999 11113 Hs.119594 NM_007174 ENSG00000122966 CIT CITK|CRIK|MCPH17|STK21 citron rho-interacting serine/threonine kinase protein-coding 338.75-5 chr18 69550154 69550660 + 1.25 NA intron (NM_152721, intron 1 of 7) A-rich|Low_complexity|Low_complexity 80476 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 213-26 chr5 13009629 13010045 + 1.25 NA intron (NR_147005, intron 2 of 4) intron (NR_147005, intron 2 of 4) 23049 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 184.75-3 chr1 42660182 42660399 + 1.25 NA intron (NM_006347, intron 4 of 9) intron (NM_006347, intron 4 of 9) 1867 NM_001330510 10465 Hs.256639 NM_006347 ENSG00000171960 PPIH CYP-20|CYPH|SnuCyp-20|USA-CYP peptidylprolyl isomerase H protein-coding 234-14 chr5 66721625 66721899 + 1.25 NA intron (NM_001290228, intron 1 of 4) L2a|LINE|L2 -107011 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 375.5-2 chr17 69272416 69272854 + 1.25 NA intron (NM_018672, intron 19 of 37) intron (NM_018672, intron 19 of 37) -27820 NM_080282 10349 Hs.25377 NM_080282 ENSG00000154263 ABCA10 EST698739 ATP binding cassette subfamily A member 10 protein-coding 228.75-11 chr2 32440911 32441147 + 1.25 NA intron (NM_016252, intron 16 of 73) AluSg|SINE|Alu 84001 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 374.5 chr5 36226566 36227162 + 1.25 NA intron (NM_001085411, intron 2 of 11) intron (NM_001085411, intron 2 of 11) 14527 NM_001287340 133686 Hs.81907 NM_153013 ENSG00000152620 NADK2 C5orf33|DECRD|MNADK|NADKD1 NAD kinase 2, mitochondrial protein-coding 226.75-15 chr2 96945825 96946231 + 1.25 NA intron (NM_001122646, intron 8 of 16) L1MB3|LINE|L1 26922 NR_110209 101927053 Hs.677537 NR_110209 LOC101927053 - uncharacterized LOC101927053 ncRNA 226.25-18 chr3 117895391 117895855 + 1.25 NA Intergenic MIRb|SINE|MIR -204698 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 418.5-2 chr4 55858544 55858923 + 1.25 NA intron (NM_001024924, intron 2 of 18) L1M5|LINE|L1 5083 NM_018261 55763 Hs.269665 NM_018261 ENSG00000090989 EXOC1 BM-102|SEC3|SEC3L1|SEC3P exocyst complex component 1 protein-coding 260.25-19 chr4 67497410 67497897 + 1.25 NA intron (NR_155754, intron 12 of 18) AluJb|SINE|Alu 47850 NM_001812 1060 Hs.479867 NM_001812 ENSG00000145241 CENPC CENP-C|CENPC1|MIF2|hcp-4 centromere protein C protein-coding 392.75-4 chr8 105264971 105265537 + 1.25 NA Intergenic MER75|DNA|PiggyBac -53184 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 234.25-8 chr2 104255638 104255970 + 1.25 NA Intergenic L1M1|LINE|L1 152528 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 285-9 chrX 140082196 140082544 + 1.25 NA Intergenic L1ME1|LINE|L1 -9297 NM_001271560 389895 Hs.127679 NM_001271560 LOC389895 - chromosome 16 open reading frame 72-like protein-coding 235.5-17 chr2 75318005 75318272 + 1.25 NA Intergenic L2a|LINE|L2 -118618 NM_015727 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 285.5-10 chr3 176464119 176464567 + 1.25 NA Intergenic L1ME3A|LINE|L1 -50760 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 266.5-9 chr2 56345873 56346120 + 1.25 NA intron (NM_001348515, intron 3 of 3) intron (NM_001348515, intron 3 of 3) -160226 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 238.25-4 chr10 63678946 63679299 + 1.25 NA Intergenic Intergenic -157232 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 361.5-2 chr13 76223277 76223815 + 1.25 NA Intergenic Intergenic -288414 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 192-14 chr12 44054095 44054280 + 1.25 NA intron (NM_001286212, intron 3 of 6) intron (NM_001286212, intron 3 of 6) 218106 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 200.75-54 chr8 106475040 106475271 + 1.25 NA intron (NM_001198532, intron 1 of 15) Tigger2|DNA|TcMar-Tigger 27231 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 166.25-38 chr21 23447630 23447789 + 1.25 NA Intergenic Intergenic -62874 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 369-2 chr8 86854714 86855220 + 1.25 NA Intergenic Intergenic -11448 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 214.25-26 chr5 104496904 104497109 + 1.25 NA Intergenic Intergenic -602468 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 346.25 chr10 125779281 125779674 + 1.25 NA Intergenic L2a|LINE|L2 -3656 NM_147191 118856 Hs.314141 NM_147191 ENSG00000154485 MMP21 HTX7|MMP-21 matrix metallopeptidase 21 protein-coding 163-85 chr8 124236642 124236849 + 1.25 NA intron (NR_125420, intron 1 of 2) intron (NR_125420, intron 1 of 2) 10653 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 333.75-3 chr22 22049316 22049840 + 1.25 NA Intergenic LOR1-int|LTR|ERV1 -5644 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 359-2 chr3 94399956 94400387 + 1.25 NA Intergenic Intergenic 337110 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 217.25-3 chr1 114416713 114416949 + 1.25 NA intron (NM_015906, intron 11 of 19) intron (NM_015906, intron 11 of 19) 94372 NM_033020 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 297.75-19 chr7 91918374 91918778 + 1.25 NA Intergenic MIRb|SINE|MIR -22286 NM_147185 10142 Hs.651221 NM_005751 ENSG00000127914 AKAP9 AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO A-kinase anchoring protein 9 protein-coding 306.75-3 chr14 50134273 50134588 + 1.25 NA intron (NM_006939, intron 18 of 22) intron (NM_006939, intron 18 of 22) -17858 NR_049739 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 327.5-7 chr4 24183644 24184038 + 1.25 NA intron (NR_148982, intron 1 of 13) intron (NR_148982, intron 1 of 13) 289064 NR_148983 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 241-22 chr3 58195829 58196077 + 1.25 NA intron (NM_004944, intron 6 of 7) intron (NM_004944, intron 6 of 7) 15019 NM_004944 1776 Hs.476453 NM_004944 ENSG00000163687 DNASE1L3 DHP2|DNAS1L3|LSD|SLEB16 deoxyribonuclease 1 like 3 protein-coding 248-11 chr7 129391952 129392281 + 1.25 NA intron (NM_001130720, intron 4 of 16) intron (NM_001130720, intron 4 of 16) 16278 NM_001130722 23382 Hs.600789 NM_015328 ENSG00000158467 AHCYL2 ADOHCYASE3|IRBIT2 adenosylhomocysteinase like 2 protein-coding 286.75-8 chr4 45090310 45090760 + 1.25 NA Intergenic Intergenic -363901 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 237.75-3 chr1 152099992 152100206 + 1.25 NA Intergenic L2c|LINE|L2 -11035 NM_001008536 126637 Hs.546477 NM_001008536 ENSG00000182898 TCHHL1 S100A17|THHL1 trichohyalin like 1 protein-coding 259.5-14 chr5 74592252 74592613 + 1.25 NA Intergenic Charlie2a|DNA|hAT-Charlie -47591 NM_001292004 3074 Hs.69293 NM_000521 ENSG00000049860 HEXB ENC-1AS|HEL-248|HEL-S-111 hexosaminidase subunit beta protein-coding 351.25 chr2 17521599 17522002 + 1.25 NA intron (NM_001321233, intron 1 of 6) L2|LINE|L2 -3360 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 277.25 chr16 62924818 62925286 + 1.25 NA Intergenic Intergenic -888614 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 316.75-2 chr1 240338273 240338539 + 1.25 NA intron (NM_001348094, intron 11 of 14) intron (NM_001348094, intron 11 of 14) 246523 NM_001348094 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 286-5 chr3 53632422 53632907 + 1.25 NA intron (NM_001128840, intron 3 of 47) Tigger1|DNA|TcMar-Tigger 138053 NM_001128840 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 341.25-2 chr1 107786842 107787226 + 1.25 NA intron (NM_006113, intron 2 of 26) intron (NM_006113, intron 2 of 26) -98535 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 232.5-33 chr4 35453621 35454110 + 1.25 NA Intergenic Intergenic 790074 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 170-67 chr8 117115689 117115960 + 1.25 NA intron (NM_001172815, intron 2 of 10) L2a|LINE|L2 -19171 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 262.75-11 chr18 639937 640319 + 1.25 NA intron (NM_199167, intron 6 of 8) LTR37B|LTR|ERV1 -17525 NM_001071 7298 Hs.369762 NM_001071 ENSG00000176890 TYMS HST422|TMS|TS thymidylate synthetase protein-coding 366 chr1 84982307 84982674 + 1.25 NA intron (NM_001330647, intron 1 of 14) Charlie7|DNA|hAT-Charlie 14623 NM_001330647 255231 Hs.591446 NM_153259 ENSG00000153898 MCOLN2 TRP-ML2|TRPML2 mucolipin 2 protein-coding 462.25 chr2 22095663 22096255 + 1.25 NA Intergenic Intergenic -385307 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 387.75-3 chr8 81359124 81359669 + 1.25 NA Intergenic HAL1|LINE|L1 78860 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 212.5-3 chr1 238730755 238731105 + 1.25 NA Intergenic (TATGTG)n|Simple_repeat|Simple_repeat -244913 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 192-35 chr3 25470977 25471305 + 1.25 NA intron (NR_110892, intron 2 of 6) intron (NR_110892, intron 2 of 6) 12831 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 353.75-6 chr5 121741958 121742406 + 1.25 NA Intergenic MLT1N2|LTR|ERVL-MaLR -109700 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 253.75-12 chr19 28603510 28603723 + 1.25 NA intron (NR_110759, intron 5 of 9) MER67A|LTR|ERV1 -3072 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 512 chr5 25184117 25184827 + 1.25 NA intron (NR_147006, intron 1 of 4) L1MB1|LINE|L1 6184 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 262.25-5 chr11 73460278 73460778 + 1.25 NA intron (NM_001286051, intron 2 of 5) AluSx|SINE|Alu 83860 NM_032871 84957 Hs.533720 NM_032871 ENSG00000054967 RELT AI3C|TNFRSF19L|TRLT RELT TNF receptor protein-coding 229-15 chr3 43061866 43062136 + 1.25 NA Intergenic MER46C|DNA|TcMar-Tigger 44078 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 291.75-5 chr20 63245196 63245450 + 1.25 NA intron (NM_001363747, intron 4 of 6) intron (NM_001363747, intron 4 of 6) 6544 NR_036163 100423014 NR_036163 ENSG00000266463 MIR3196 mir-3196 microRNA 3196 ncRNA 399-3 chr5 27248997 27249565 + 1.25 NA Intergenic Intergenic -210695 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 392-2 chr6 145671797 145672334 + 1.25 NA intron (NM_001368129, intron 2 of 4) intron (NM_001368129, intron 2 of 4) 14812 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 223.5-5 chr10 30737984 30738293 + 1.25 NA Intergenic Intergenic 14919 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 276.75-14 chr7 42460341 42460592 + 1.25 NA Intergenic Intergenic -223257 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 177.75-45 chr3 41021618 41021881 + 1.25 NA Intergenic L1ME3G|LINE|L1 -177756 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 370.5 chr10 115470286 115470768 + 1.25 NA intron (NM_207303, intron 24 of 28) intron (NM_207303, intron 24 of 28) 377162 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 294-6 chr7 7812381 7812871 + 1.25 NA intron (NM_001302350, intron 4 of 4) intron (NM_001302350, intron 4 of 4) -94019 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 231.5-37 chr8 86660232 86660552 + 1.25 NA intron (NM_019098, intron 6 of 17) intron (NM_019098, intron 6 of 17) 83283 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 259.75-13 chr3 161256155 161256519 + 1.25 NA Intergenic Intergenic 35047 NM_001320227 51068 Hs.598836 NM_015938 ENSG00000169251 NMD3 CGI-07 NMD3 ribosome export adaptor protein-coding 181.75-53 chr5 85899897 85900105 + 1.25 NA Intergenic Intergenic -382443 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 296.5-5 chr11 95691041 95691293 + 1.25 NA Intergenic L1MB2|LINE|L1 98615 NM_001330357 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 247.25-5 chr10 82480356 82480619 + 1.25 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -247567 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 220.25-5 chr10 54454019 54454283 + 1.25 NA intron (NM_001142773, intron 2 of 31) (AT)n|Simple_repeat|Simple_repeat -32079 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 189.75-59 chr5 75351588 75351861 + 1.25 NA intron (NM_001364187, intron 11 of 19) MIRb|SINE|MIR 14504 NM_000859 3156 Hs.628096 NM_000859 ENSG00000113161 HMGCR LDLCQ3 3-hydroxy-3-methylglutaryl-CoA reductase protein-coding 447.25-3 chr4 65415685 65416459 + 1.25 NA intron (NM_001281767, intron 6 of 16) intron (NM_001281767, intron 6 of 16) 253416 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 407.75 chr1 117281504 117282021 + 1.25 NA Intergenic MER2|DNA|TcMar-Tigger -13704 NR_126408 104355292 Hs.576446 NR_126408 ENSG00000235202 LINC01525 lnc-MAN1A2-1 long intergenic non-protein coding RNA 1525 ncRNA 319.5-5 chr17 81696363 81696641 + 1.25 NA exon (NM_004712, exon 16 of 22) exon (NM_004712, exon 16 of 22) 2745 NR_106844 102465471 NR_106844 ENSG00000277784 MIR6786 hsa-mir-6786 microRNA 6786 ncRNA 214.5-50 chr8 140946349 140946688 + 1.25 NA intron (NM_001352699, intron 1 of 35) HAL1|LINE|L1 54486 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 226-21 chr5 19489819 19490123 + 1.25 NA intron (NM_001349559, intron 11 of 12) intron (NM_001349559, intron 11 of 12) 396301 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 330.75-9 chr9 94758133 94758677 + 1.25 NA intron (NM_001193331, intron 1 of 7) intron (NM_001193331, intron 1 of 7) -1244 NM_001193329 84909 Hs.434253 NM_032823 ENSG00000148120 AOPEP AP-O|APO|C90RF3|C9orf3|ONPEP aminopeptidase O (putative) protein-coding 354.25-2 chr22 34703046 34703776 + 1.25 NA Intergenic Arthur1B|DNA|hAT-Tip100 294505 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 362.5-2 chr2 104436265 104436902 + 1.25 NA intron (NR_015399, intron 1 of 3) intron (NR_015399, intron 1 of 3) 2236 NR_015399 150568 Hs.107284 NR_015399 ENSG00000235597 LINC01102 - long intergenic non-protein coding RNA 1102 ncRNA 379.75 chr1 77417683 77418032 + 1.25 NA intron (NM_012093, intron 8 of 13) intron (NM_012093, intron 8 of 13) 134770 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 222-8 chr14 51064997 51065253 + 1.25 NA intron (NM_015163, intron 1 of 9) intron (NM_015163, intron 1 of 9) 30579 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 397.5-2 chr14 51272159 51272731 + 1.25 NA Intergenic Intergenic 32198 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 208.5-33 chr2 74694624 74694984 + 1.25 NA Intergenic Intergenic 40557 NM_004263 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 284-3 chr2 108555707 108556193 + 1.25 NA intron (NM_001193483, intron 1 of 9) intron (NM_001193483, intron 1 of 9) 21595 NM_001193483 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 237.25-20 chr7 135062206 135062514 + 1.25 NA intron (NR_144293, intron 7 of 10) L1MA8|LINE|L1 75852 NM_001345850 340351 Hs.648616 NM_178563 ENSG00000146856 AGBL3 CCP3 ATP/GTP binding protein like 3 protein-coding 250.25-8 chr15 51348472 51348781 + 1.25 NA intron (NM_181789, intron 1 of 9) AluJo|SINE|Alu 6971 NM_181789 342035 Hs.526441 NM_181789 ENSG00000186417 GLDN CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112 gliomedin protein-coding 193.5-57 chr4 183379961 183380201 + 1.25 NA Intergenic (TAAA)n|Simple_repeat|Simple_repeat -57655 NM_001185149 100132463 Hs.727475 NM_001185149 ENSG00000185758 CLDN24 CLDN21 claudin 24 protein-coding 364-4 chr4 178846084 178846509 + 1.25 NA Intergenic Intergenic -938360 NR_108093 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 369 chr14 53588825 53589382 + 1.25 NA Intergenic Intergenic 359381 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 458.75 chr17 69983855 69984846 + 1.25 NA TTS (NR_110874) TTS (NR_110874) 22643 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 244.75-19 chr6 151404111 151404367 + 1.25 NA TTS (NM_017909) TTS (NM_017909) -12680 NM_020861 57621 Hs.520073 NM_020861 ENSG00000181472 ZBTB2 ZNF437 zinc finger and BTB domain containing 2 protein-coding 348.75-3 chr12 2754209 2754628 + 1.25 NA intron (NR_146317, intron 3 of 3) L2c|LINE|L2 -40552 NM_002014 2288 Hs.524183 NM_002014 ENSG00000004478 FKBP4 FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52 FKBP prolyl isomerase 4 protein-coding 219.75-38 chr7 12312885 12313137 + 1.25 NA Intergenic L1MEd|LINE|L1 90854 NM_001135924 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 323-8 chr8 122088098 122088615 + 1.25 NA Intergenic Intergenic -446916 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 182.75-23 chr14 45843709 45843879 + 1.25 NA Intergenic Intergenic -128192 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 183-50 chr7 80266288 80266600 + 1.25 NA Intergenic Intergenic 107995 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 314-4 chr2 81863783 81864192 + 1.25 NA Intergenic MIRb|SINE|MIR -397041 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 306.25-7 chr12 130101742 130102121 + 1.25 NA Intergenic Intergenic 30596 NR_146538 105370078 NR_146538 LINC02419 - long intergenic non-protein coding RNA 2419 ncRNA 321.5-4 chr4 144762715 144763114 + 1.25 NA Intergenic L1PA15|LINE|L1 116758 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 250.5-8 chr13 83456989 83457323 + 1.25 NA Intergenic L1PA14|LINE|L1 425237 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 258.25-12 chr2 167479891 167480163 + 1.25 NA Intergenic LTR8B|LTR|ERV1 292655 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 152-27 chr17 59668011 59668273 + 1.25 NA intron (NM_001288653, intron 13 of 31) MER3|DNA|hAT-Charlie 39456 NM_001015509 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 441.25 chr19 318090 318559 + 1.25 NA intron (NM_001346105, intron 6 of 12) L1MEg|LINE|L1 26517 NM_001346105 54531 Hs.101891 NM_017550 ENSG00000105556 MIER2 KIAA1193|Mi-er2 MIER family member 2 protein-coding 271.25-12 chr3 125323199 125323550 + 1.25 NA 5' UTR (NM_021964, exon 3 of 9) 5' UTR (NM_021964, exon 3 of 9) 33906 NM_001348433 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 196.75-4 chr1 190079612 190079806 + 1.25 NA Intergenic Intergenic 396301 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 248.25-15 chr5 11886077 11886406 + 1.25 NA intron (NM_001288717, intron 1 of 20) L1MA9|LINE|L1 18205 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 262.75-4 chr10 66910000 66910486 + 1.25 NA non-coding (NR_111911, exon 4 of 7) non-coding (NR_111911, exon 4 of 7) -15793 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 198-22 chr3 94424313 94424675 + 1.25 NA Intergenic Intergenic 361433 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 201.75-37 chr7 22932720 22933038 + 1.25 NA Intergenic MLT1C|LTR|ERVL-MaLR 76266 NR_003075 692210 NR_003075 ENSG00000221740 SNORD93 HBII-336 small nucleolar RNA, C/D box 93 snoRNA 283.5-14 chr4 165563646 165563971 + 1.25 NA Intergenic Intergenic -120831 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 254.5-11 chr15 89327880 89328306 + 1.25 NA intron (NM_001126131, intron 6 of 22) intron (NM_001126131, intron 6 of 22) -1283 NR_106824 102466983 NR_106824 ENSG00000275101 MIR6766 hsa-mir-6766 microRNA 6766 ncRNA 213-5 chr11 117259795 117260180 + 1.25 NA intron (NM_001077239, intron 6 of 14) L1ME2z|LINE|L1 27251 NM_001278249 257160 Hs.591934 NM_207343 ENSG00000167257 RNF214 - ring finger protein 214 protein-coding 217.25-26 chr2 172587894 172588137 + 1.25 NA intron (NM_002610, intron 9 of 10) LTR12D|LTR|ERV1 31925 NM_001278549 5163 Hs.470633 NM_002610 ENSG00000152256 PDK1 - pyruvate dehydrogenase kinase 1 protein-coding 236.25-23 chr5 25553466 25553669 + 1.25 NA Intergenic Intergenic 362614 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 193.5-23 chr15 94534092 94534340 + 1.25 NA Intergenic L2|LINE|L2 178286 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 325.25-4 chr2 94977660 94978005 + 1.25 NA Intergenic Intergenic -30490 NR_037597 442028 Hs.611545 NR_037597 ENSG00000259848 LOC442028 - uncharacterized LOC442028 ncRNA 266.5-10 chr2 214209084 214209357 + 1.25 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -201834 NR_159945 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 212.25-42 chr7 43020607 43020886 + 1.25 NA Intergenic Intergenic 88370 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 260.75-20 chr5 39567138 39567580 + 1.25 NA Intergenic Intergenic 46928 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 189-33 chr2 179041789 179042079 + 1.25 NA intron (NM_001316745, intron 2 of 11) L1PA10|LINE|L1 8203 NM_001316745 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 338.75-7 chr4 30729940 30730375 + 1.25 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 9788 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 286.25-2 chr11 25137253 25137649 + 1.25 NA Intergenic Tigger3a|DNA|TcMar-Tigger 640398 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 203.25-20 chr2 45374874 45375174 + 1.25 NA Intergenic L1MB8|LINE|L1 -120083 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 344.5 chr1 42482415 42482742 + 1.25 NA intron (NM_001355227, intron 2 of 18) intron (NM_001355227, intron 2 of 18) 19292 NM_001355227 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 377.75-2 chr16 68375402 68376185 + 1.25 NA intron (NM_018667, intron 2 of 8) intron (NM_018667, intron 2 of 8) 64679 NM_001290018 54496 Hs.640229 NM_019023 ENSG00000132600 PRMT7 SBIDDS protein arginine methyltransferase 7 protein-coding 291.5-5 chr2 49998372 49998735 + 1.25 NA intron (NM_001330093, intron 21 of 22) Tigger15a|DNA|TcMar-Tigger -24350 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 288.5-2 chr14 63378158 63378517 + 1.25 NA intron (NM_001282180, intron 13 of 13) MER85|DNA|PiggyBac -59402 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 390.5-3 chr2 163333085 163333794 + 1.25 NA Intergenic Intergenic 402569 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 361.25-7 chr8 72814982 72815571 + 1.25 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 83231 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 211-12 chr13 96057526 96057774 + 1.25 NA Intergenic L1MB2|LINE|L1 -4249 NM_020121 55757 Hs.193226 NM_020121 ENSG00000102595 UGGT2 HUGT2|UGCGL2|UGT2 UDP-glucose glycoprotein glucosyltransferase 2 protein-coding 201.75-31 chr5 105197475 105197823 + 1.25 NA Intergenic Intergenic 98175 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 471.5 chr5 31478747 31479451 + 1.25 NA intron (NM_013235, intron 15 of 34) intron (NM_013235, intron 15 of 34) 52994 NM_013235 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 283.5-7 chr2 134249273 134249694 + 1.25 NA intron (NM_001371457, intron 1 of 16) L1MB8|LINE|L1 -4589 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 278.5-9 chr3 145592134 145592627 + 1.25 NA Intergenic X6B_LINE|LINE|CR1 476805 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 287-3 chr13 75851446 75851733 + 1.25 NA intron (NM_005358, intron 26 of 29) intron (NM_005358, intron 26 of 29) -19449 NM_001257995 729420 Hs.586820 NM_001257995 LMO7DN C13orf45 LMO7 downstream neighbor protein-coding 444-2 chr3 175480550 175481244 + 1.25 NA intron (NM_207015, intron 9 of 13) intron (NM_207015, intron 9 of 13) 111357 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 389.5 chr10 7761451 7761984 + 1.25 NA intron (NM_012311, intron 11 of 12) Tigger4b|DNA|TcMar-Tigger 26276 NM_012311 22944 Hs.397918 NM_012311 ENSG00000151657 KIN BTCD|KIN17|Rts2 Kin17 DNA and RNA binding protein protein-coding 238.75-29 chr8 16908987 16909334 + 1.25 NA Intergenic Intergenic 93185 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 262-6 chr3 164981853 164982147 + 1.25 NA intron (NM_001041, intron 47 of 47) intron (NM_001041, intron 47 of 47) 96496 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 392.5-2 chr18 29229534 29230091 + 1.25 NA Intergenic L1MB4|LINE|L1 -1052682 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 181.25-4 chr1 190650141 190650421 + 1.25 NA intron (NR_033922, intron 1 of 4) intron (NR_033922, intron 1 of 4) 25391 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 279.25-7 chr16 86139127 86139557 + 1.25 NA Intergenic Intergenic -56839 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 298.5-2 chr1 168611978 168612424 + 1.25 NA Intergenic Intergenic 35596 NM_002995 6375 Hs.546295 NM_002995 ENSG00000143184 XCL1 ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 X-C motif chemokine ligand 1 protein-coding 489 chr14 32641550 32642123 + 1.25 NA intron (NM_004274, intron 7 of 13) intron (NM_004274, intron 7 of 13) -297043 NM_173159 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 268.5-12 chr2 21386320 21386603 + 1.25 NA Intergenic Intergenic 262475 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 320.25-6 chr9 104140009 104140337 + 1.25 NA 3' UTR (NM_001042551, exon 25 of 25) 3' UTR (NM_001042551, exon 25 of 25) 45546 NM_001042550 10592 Hs.119023 NM_006444 ENSG00000136824 SMC2 CAP-E|CAPE|SMC-2|SMC2L1 structural maintenance of chromosomes 2 protein-coding 191.5-9 chr10 44333528 44333835 + 1.25 NA Intergenic MLT1A0|LTR|ERVL-MaLR 40931 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 264-2 chr1 82066677 82067192 + 1.25 NA Intergenic L1ME4c|LINE|L1 264481 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 155.5-83 chr5 54973170 54973381 + 1.25 NA Intergenic Tigger13a|DNA|TcMar-Tigger 12318 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 308.25 chr1 219761596 219762230 + 1.25 NA Intergenic Intergenic -148768 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 333.5-4 chr22 34951258 34951852 + 1.25 NA intron (NR_138042, intron 1 of 4) intron (NR_138042, intron 1 of 4) 46361 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 252.5 chr1 165989499 165990035 + 1.25 NA Intergenic L2-3_Crp|LINE|L2 81846 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 275.5-18 chr5 104378554 104378904 + 1.25 NA Intergenic L1MC3|LINE|L1 -720745 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 318.5-2 chr10 73073821 73074315 + 1.25 NA intron (NM_001017962, intron 2 of 14) intron (NM_001017962, intron 2 of 14) 22906 NM_001142595 5033 Hs.500047 NM_000917 ENSG00000122884 P4HA1 P4HA prolyl 4-hydroxylase subunit alpha 1 protein-coding 330.5-12 chr6 161115053 161115521 + 1.25 NA non-coding (NR_120425, exon 27 of 28) non-coding (NR_120425, exon 27 of 28) 46695 NR_024277 79992 Hs.664873 NM_024929 ENSG00000279355 AGPAT4-IT1 C6orf59|NCRNA00241 AGPAT4 intronic transcript 1 ncRNA 167-4 chr1 97970400 97970594 + 1.25 NA Intergenic Intergenic -28757 NR_146275 109729128 NR_146275 LINC01930 - long intergenic non-protein coding RNA 1930 ncRNA 325.5-7 chr4 73571160 73571488 + 1.25 NA TTS (NM_001270392) TTS (NM_001270392) 49112 NM_001270391 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 357.75-6 chr7 87522612 87523077 + 1.25 NA intron (NM_001348944, intron 23 of 29) intron (NM_001348944, intron 23 of 29) -47141 NM_018850 5244 Hs.654403 NM_000443 ENSG00000005471 ABCB4 ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3 ATP binding cassette subfamily B member 4 protein-coding 310.5-9 chr8 117274178 117274576 + 1.25 NA Intergenic Intergenic 139382 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 319.5-9 chr4 65136535 65137118 + 1.25 NA Intergenic THE1C-int|LTR|ERVL-MaLR -132326 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 184-27 chr2 113041566 113041803 + 1.25 NA intron (NM_173178, intron 1 of 4) L1MEa|LINE|L1 11183 NM_173178 27177 Hs.278909 NM_014438 ENSG00000136696 IL36B FIL1|FIL1-(ETA)|FIL1H|FILI-(ETA)|IL-1F8|IL-1H2|IL1-ETA|IL1F8|IL1H2 interleukin 36 beta protein-coding 487.5 chr3 43696294 43696904 + 1.25 NA intron (NM_001365649, intron 1 of 6) intron (NM_001365649, intron 1 of 6) -5005 NM_001346469 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 334.75-4 chr16 53749565 53749850 + 1.25 NA intron (NM_001363897, intron 1 of 7) AluYi6|SINE|Alu 45551 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 428.75-2 chr8 140858615 140859152 + 1.25 NA intron (NR_148037, intron 6 of 34) L1MEd|LINE|L1 -126230 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 311.75-6 chr7 85775455 85775954 + 1.25 NA Intergenic Intergenic 354582 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 194-34 chr4 37050366 37050757 + 1.25 NA Intergenic Intergenic 48782 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 370 chr2 206861018 206861642 + 1.25 NA Intergenic Intergenic -78022 NR_036077 100422993 NR_036077 ENSG00000283469 MIR3130-1 MIR3130-3|mir-3130-1 microRNA 3130-1 ncRNA 201.5-55 chr5 119236052 119236390 + 1.25 NA intron (NM_001290321, intron 39 of 43) L1ME3G|LINE|L1 -32538 NM_001077654 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 325.25-7 chr8 144231218 144231483 + 1.25 NA intron (NM_001288814, intron 13 of 41) SVA_D|Retroposon|SVA 31387 NR_107057 102465906 NR_107057 ENSG00000284054 MIR7112 MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2 microRNA 7112 ncRNA 194.25-4 chr10 92632512 92632826 + 1.25 NA exon (NM_004523, exon 13 of 22) exon (NM_004523, exon 13 of 22) 39539 NM_004523 3832 Hs.8878 NM_004523 ENSG00000138160 KIF11 EG5|HKSP|KNSL1|MCLMR|TRIP5 kinesin family member 11 protein-coding 555 chr11 7777651 7778696 + 1.25 NA Intergenic Intergenic 18769 NM_153444 120065 Hs.351824 NM_153444 ENSG00000183303 OR5P2 JCG3|JCG4 olfactory receptor family 5 subfamily P member 2 protein-coding 215.5-15 chr14 66058647 66059040 + 1.25 NA Intergenic Intergenic -427528 NR_110307 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 223-8 chr13 28737794 28738277 + 1.25 NA Intergenic AluJr|SINE|Alu -19022 NM_001347960 283537 Hs.117167 NM_181785 ENSG00000139508 SLC46A3 FKSG16 solute carrier family 46 member 3 protein-coding 166.5-34 chr18 53860123 53860441 + 1.25 NA Intergenic Intergenic -279223 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 284-11 chr8 82016648 82017105 + 1.25 NA Intergenic Intergenic -174590 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 183.75-75 chr5 152565019 152565316 + 1.25 NA Intergenic MIR|SINE|MIR -159888 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 305.25-5 chr3 69889757 69890156 + 1.25 NA intron (NM_198159, intron 2 of 9) intron (NM_198159, intron 2 of 9) 23732 NM_198177 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 226-6 chr12 122135993 122136311 + 1.25 NA intron (NM_014938, intron 11 of 16).2 intron (NM_014938, intron 11 of 16).2 -31567 NM_152759 254050 Hs.374856 NM_152759 ENSG00000158113 LRRC43 - leucine rich repeat containing 43 protein-coding 226.5-28 chr8 118968509 118968755 + 1.25 NA intron (NM_001324095, intron 1 of 7) (TA)n|Simple_repeat|Simple_repeat 16369 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 249-7 chr2 191748581 191749015 + 1.25 NA Intergenic Intergenic -44042 NR_157850 729254 NR_157850 LOC729254 - hCG2045843 ncRNA 214.75-5 chr1 115619492 115619748 + 1.25 NA Intergenic L1MCc|LINE|L1 -22350 NM_138959 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 262.25-8 chr19 12361067 12361395 + 1.25 NA intron (NM_030824, intron 3 of 5) intron (NM_030824, intron 3 of 5) 4452 NM_030824 79973 Hs.253193 NM_030824 ENSG00000198342 ZNF442 - zinc finger protein 442 protein-coding 163.75-49 chr4 60965442 60965685 + 1.25 NA Intergenic Intergenic 42944 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 289.5-18 chr8 89943091 89943489 + 1.25 NA exon (NM_002485, exon 14 of 16) exon (NM_002485, exon 14 of 16) 40720 NM_001126111 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 474 chr14 53027375 53027990 + 1.25 NA Intergenic LTR48B|LTR|ERV1 -76585 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 229-5 chr10 14185348 14185876 + 1.25 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 111328 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 351 chr1 27594079 27594658 + 1.25 NA intron (NM_001029882, intron 1 of 6) intron (NM_001029882, intron 1 of 6) 9126 NM_001029882 27245 Hs.469280 NM_001029882 ENSG00000126705 AHDC1 MRD25 AT-hook DNA binding motif containing 1 protein-coding 309.5-4 chr3 153951011 153951310 + 1.25 NA Intergenic Intergenic -169843 NM_001251962 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 253.75-8 chr14 55635438 55635807 + 1.25 NA intron (NR_073129, intron 10 of 45) MamRep137|DNA|TcMar-Tigger 55415 NR_073128 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 279-4 chr13 71659326 71659637 + 1.25 NA intron (NM_080759, intron 2 of 10) intron (NM_080759, intron 2 of 10) 207711 NM_080760 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 250 chr1 83935589 83936036 + 1.25 NA intron (NM_001350215, intron 7 of 19) intron (NM_001350215, intron 7 of 19) 63320 NM_001350215 79739 Hs.445826 NM_024686 ENSG00000137941 TTLL7 - tubulin tyrosine ligase like 7 protein-coding 243.5-10 chr17 57249703 57249987 + 1.25 NA Intergenic L1MEd|LINE|L1 -6006 NM_001322250 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 264-4 chr11 106742970 106743324 + 1.25 NA intron (NM_000855, intron 6 of 7) L2c|LINE|L2 275329 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 287.75-2 chr1 226990825 226991311 + 1.25 NA 3' UTR (NM_001366010, exon 35 of 35) 3' UTR (NM_001366010, exon 35 of 35) 50774 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 329.25-5 chr2 69502436 69502820 + 1.25 NA intron (NM_014911, intron 16 of 21) AluSp|SINE|Alu 17543 NR_003705 100124535 Hs.693447 NR_003705 ENSG00000207016 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 239.75-17 chr3 156819433 156819771 + 1.25 NA Intergenic Intergenic -2540 NR_038387 730091 Hs.659905 NR_038387 ENSG00000240875 LINC00886 - long intergenic non-protein coding RNA 886 ncRNA 268.25-12 chr2 80556650 80557099 + 1.25 NA intron (NM_001282599, intron 6 of 11) intron (NM_001282599, intron 6 of 11) 243495 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 406.75 chr5 90936145 90936768 + 1.25 NA intron (NR_003149, intron 83 of 89) L1MC|LINE|L1 377659 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 346-3 chr3 118483430 118483745 + 1.25 NA Intergenic LTR48B|LTR|ERV1 -158181 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 280.5-3 chr15 65486495 65486926 + 1.25 NA intron (NR_135485, intron 7 of 20) L1PB2|LINE|L1 30564 NM_197960 54878 Hs.458609 NM_017743 ENSG00000074603 DPP8 DP8|DPRP-1|DPRP1|MST097|MSTP097|MSTP135|MSTP141 dipeptidyl peptidase 8 protein-coding 266.5-19 chr9 78918587 78918846 + 1.25 NA Intergenic Intergenic 226950 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 405 chr14 56182119 56182775 + 1.25 NA intron (NM_021255, intron 2 of 5) intron (NM_021255, intron 2 of 5) 64036 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 251.25-9 chr13 99554058 99554367 + 1.25 NA intron (NM_004800, intron 13 of 16) intron (NM_004800, intron 13 of 16) -22900 NR_126390 104355149 Hs.639387 NR_126390 LINC01039 - long intergenic non-protein coding RNA 1039 ncRNA 334-5 chr7 13565501 13566171 + 1.25 NA Intergenic L1MC|LINE|L1 420678 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 271.75-20 chr8 91273826 91274130 + 1.25 NA intron (NM_134266, intron 2 of 18) intron (NM_134266, intron 2 of 18) 24659 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 176.75-3 chr1 78537913 78538095 + 1.25 NA 3' UTR (NM_000959, exon 3 of 3) 3' UTR (NM_000959, exon 3 of 3) 47030 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 198.5-46 chr5 144736651 144736954 + 1.25 NA Intergenic L1PA16|LINE|L1 531411 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 232.75-31 chr7 15611319 15611629 + 1.25 NA 3' UTR (NM_005924, exon 3 of 3) 3' UTR (NM_005924, exon 3 of 3) -49459 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 175.5-36 chr17 64428518 64428722 + 1.25 NA Intergenic MER41-int|LTR|ERV1 -20495 NM_001291317 284021 Hs.631749 NM_001085423 ENSG00000271605 MILR1 Allergin-1|C17orf60|MCA-32|MCA32 mast cell immunoglobulin like receptor 1 protein-coding 239.25-18 chr3 70004401 70004661 + 1.25 NA intron (NR_110000, intron 1 of 3) MamRep4096|DNA|hAT-Tip100 4787 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 280.75-12 chr4 35826481 35827227 + 1.25 NA Intergenic Intergenic 417085 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 355.25-3 chr14 54077550 54078166 + 1.25 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -120967 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 153-62 chr4 59869072 59869275 + 1.25 NA Intergenic L2a|LINE|L2 855600 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 270.25-6 chr17 51216128 51216738 + 1.25 NA intron (NM_017643, intron 6 of 16) intron (NM_017643, intron 6 of 16) 43616 NM_017643 54799 Hs.656803 NM_017643 ENSG00000011258 MBTD1 SA49P01 mbt domain containing 1 protein-coding 263.25-11 chr18 980768 981122 + 1.25 NA Intergenic Intergenic -52952 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 232-27 chr8 125620512 125620818 + 1.25 NA Intergenic Intergenic 188456 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 190.75-72 chr8 131288959 131289261 + 1.25 NA Intergenic Intergenic -248201 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 323.5-3 chr11 68479117 68479526 + 1.25 NA intron (NM_001352362, intron 2 of 24) Tigger4|DNA|TcMar-Tigger 18569 NM_001352378 55291 Hs.503022 NM_018312 ENSG00000110075 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6 regulatory subunit 3 protein-coding 339.5-7 chr7 41800091 41800687 + 1.25 NA Intergenic Intergenic -97299 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 311.25-5 chr2 188405870 188406241 + 1.25 NA intron (NM_016315, intron 2 of 11) Tigger3a|DNA|TcMar-Tigger 108563 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 327.5 chr1 62934725 62935098 + 1.25 NA Intergenic MIR|SINE|MIR 76014 NR_146607 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 224-22 chr3 197287240 197287737 + 1.25 NA intron (NM_001366216, intron 3 of 23) intron (NM_001366216, intron 3 of 23) 6460 NR_039960 100616216 NR_039960 ENSG00000265850 MIR4797 - microRNA 4797 ncRNA 249.75-9 chr2 225622949 225623392 + 1.25 NA intron (NM_001371273, intron 5 of 7) MER89|LTR|ERV1 222284 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 257.25-23 chr6 122502744 122503130 + 1.25 NA intron (NM_001270393, intron 3 of 7) MLT1A|LTR|ERVL-MaLR 31020 NM_001270393 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 206.25-36 chr6 36538820 36539088 + 1.25 NA intron (NM_007271, intron 2 of 13) L1ME2z|LINE|L1 8525 NM_007271 11329 Hs.409578 NM_007271 ENSG00000112079 STK38 NDR|NDR1 serine/threonine kinase 38 protein-coding 206.25-4 chr1 198268455 198268733 + 1.25 NA intron (NM_133494, intron 5 of 9) intron (NM_133494, intron 5 of 9) 111596 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 263.75-6 chr14 31215498 31215889 + 1.25 NA Intergenic L1MC1|LINE|L1 -7900 NM_015382 25831 Hs.708017 NM_015382 ENSG00000092148 HECTD1 EULIR HECT domain E3 ubiquitin protein ligase 1 protein-coding 478.5 chr2 66764225 66764953 + 1.25 NA Intergenic Intergenic -61362 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 347.75-4 chr12 67260222 67260638 + 1.25 NA Intergenic MER4-int|LTR|ERV1 -8928 NM_001329675 55832 Hs.546407 NM_018448 ENSG00000111530 CAND1 TIP120|TIP120A cullin associated and neddylation dissociated 1 protein-coding 196.5-64 chr9 115091385 115091778 + 1.25 NA intron (NM_002160, intron 1 of 27) intron (NM_002160, intron 1 of 27) 26576 NM_002160 3371 Hs.143250 NM_002160 ENSG00000041982 TNC 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C tenascin C protein-coding 534 chr17 59083732 59084371 + 1.25 NA exon (NM_015294, exon 5 of 24) exon (NM_015294, exon 5 of 24) 22829 NM_001353085 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 413 chr11 15061474 15062083 + 1.25 NA Intergenic HAL1|LINE|L1 -11815 NM_000728 797 Hs.534305 NM_000728 ENSG00000175868 CALCB CALC2|CGRP-II|CGRP2 calcitonin related polypeptide beta protein-coding 258.25-19 chr6 125739805 125740222 + 1.25 NA Intergenic AluSq2|SINE|Alu -9619 NM_012259 23493 Hs.144287 NM_012259 ENSG00000135547 HEY2 CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32 hes related family bHLH transcription factor with YRPW motif 2 protein-coding 164.75-21 chr14 61718526 61718708 + 1.25 NA intron (NR_144368, intron 1 of 2) intron (NR_144368, intron 1 of 2) 20995 NM_001243084 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 233.25-16 chr2 51160716 51161068 + 1.25 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 128291 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 178.5-3 chr1 152868326 152868613 + 1.25 NA Intergenic Intergenic -9853 NM_030663 4184 Hs.111850 NM_030663 ENSG00000163206 SMCP HSMCSGEN1|MCS|MCSP sperm mitochondria associated cysteine rich protein protein-coding 248-6 chr16 49953696 49954011 + 1.25 NA Intergenic Intergenic -71353 NR_104042 255919 Hs.59134 NM_153261 ENSG00000205423 CNEP1R1 C16orf69|NEP1-R1|NEP1R1|TMEM188|TMP125 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein-coding 351.25-3 chr4 27530414 27530890 + 1.25 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 313173 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 146.25-73 chr4 72858169 72858351 + 1.25 NA Intergenic Intergenic 211456 NM_001297732 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 316.25-2 chr11 78758399 78759001 + 1.25 NA intron (NM_001098816, intron 18 of 33) MIRc|SINE|MIR -183836 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 411 chr1 79721524 79722294 + 1.25 NA Intergenic L1MD1|LINE|L1 -715179 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 212.25-14 chr14 84758959 84759160 + 1.25 NA Intergenic Intergenic -512873 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 337-2 chr18 71512785 71513360 + 1.25 NA Intergenic Intergenic 65884 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 340.25-2 chr2 14156874 14157459 + 1.25 NA Intergenic Intergenic 243792 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 162.75-8 chr10 30747750 30748000 + 1.25 NA Intergenic Intergenic 24656 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 253.75-17 chr2 203339470 203339743 + 1.25 NA intron (NM_001282932, intron 1 of 9) AluSx1|SINE|Alu 11212 NM_001282925 10152 Hs.471156 NM_005759 ENSG00000138443 ABI2 ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB abl interactor 2 protein-coding 240.25-30 chrX 58339135 58339389 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr -428629 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 246.5-12 chr2 52592965 52593250 + 1.25 NA Intergenic Intergenic 109508 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 281-7 chr4 169564871 169565293 + 1.25 NA intron (NM_001199400, intron 11 of 32) intron (NM_001199400, intron 11 of 32) 47501 NM_001199399 4750 Hs.481181 NM_012224 ENSG00000137601 NEK1 ALS24|NY-REN-55|SRPS2|SRPS2A|SRTD6 NIMA related kinase 1 protein-coding 282-10 chr5 104769042 104769447 + 1.25 NA Intergenic Intergenic -330230 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 275-9 chr2 83219006 83219434 + 1.25 NA Intergenic Intergenic -303594 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 336-3 chr16 85608543 85609120 + 1.25 NA Intergenic Intergenic -2578 NM_001134473 23199 Hs.461647 NM_014615 ENSG00000131149 GSE1 CRHSP24|KIAA0182 Gse1 coiled-coil protein protein-coding 293.25-2 chr1 167911017 167911271 + 1.25 NA intron (NM_018417, intron 1 of 32) L3|LINE|CR1 2990 NM_001167749 55811 Hs.320892 NM_018417 ENSG00000143199 ADCY10 HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC adenylate cyclase 10 protein-coding 373 chr1 194214840 194215518 + 1.25 NA Intergenic L2a|LINE|L2 910434 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 246-2 chr11 111823884 111824153 + 1.25 NA intron (NR_147984, intron 13 of 15) intron (NR_147984, intron 13 of 15) 47263 NM_001352415 79796 Hs.745155 NM_024740 ENSG00000086848 ALG9 CDG1L|DIBD1|GIKANIS|LOH11CR1J ALG9 alpha-1,2-mannosyltransferase protein-coding 186.75-10 chr10 54359668 54359906 + 1.25 NA intron (NM_001354411, intron 5 of 34) intron (NM_001354411, intron 5 of 34) -126443 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 174.25-35 chr20 7208821 7209088 + 1.25 NA intron (NR_110609, intron 3 of 7) intron (NR_110609, intron 3 of 7) 45248 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 509.75 chr4 53760523 53761289 + 1.25 NA Intergenic L1MA7|LINE|L1 65005 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 183.75-41 chr2 18060967 18061154 + 1.25 NA Intergenic Intergenic 182393 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 190.5-26 chr2 60295787 60296067 + 1.25 NA Intergenic Intergenic 87109 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 426.25 chr16 71276451 71277075 + 1.25 NA Intergenic MER41B|LTR|ERV1 12639 NM_001324374 55783 Hs.72782 NM_018348 ENSG00000180917 CMTR2 AFT|FTSJD1|HMTr2|MTr2 cap methyltransferase 2 protein-coding 181.75-19 chr12 75599708 75599888 + 1.25 NA Intergenic Intergenic -88189 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 233-13 chr17 20809417 20809802 + 1.25 NA Intergenic Intergenic -58918 NR_160710 440416 Hs.661076 NR_104185 ENSG00000233098 CCDC144NL-AS1 - CCDC144NL antisense RNA 1 ncRNA 257.5-5 chr12 40696074 40696460 + 1.25 NA intron (NM_001256063, intron 1 of 15) intron (NM_001256063, intron 1 of 15) 3825 NM_001256063 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 331.5-11 chr8 129212674 129213248 + 1.25 NA Intergenic L1ME4a|LINE|L1 28279 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 327.25-2 chr14 27488773 27489256 + 1.25 NA intron (NR_148991, intron 2 of 2) L1MB1|LINE|L1 -123574 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 184-30 chr20 45767440 45767737 + 1.25 NA Intergenic Intergenic 24295 NM_080614 140686 Hs.419126 NM_080614 ENSG00000124116 WFDC3 WAP14|dJ447F3.3 WAP four-disulfide core domain 3 protein-coding 273.25-5 chr10 88753531 88754042 + 1.25 NA Intergenic (ATAAT)n|Simple_repeat|Simple_repeat -7620 NM_001102469 643418 Hs.632091 NM_001102469 ENSG00000204020 LIPN ARCI8|LI4|LIPL4|bA186O14.3 lipase family member N protein-coding 343-3 chr8 71808910 71809281 + 1.25 NA Intergenic Intergenic -34028 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 249.75-6 chr16 6758839 6759065 + 1.25 NA intron (NM_018723, intron 3 of 15) intron (NM_018723, intron 3 of 15) -14857 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 271-14 chrX 96914158 96914407 + 1.25 NA intron (NM_007309, intron 7 of 26) intron (NM_007309, intron 7 of 26) 30374 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 252.5-5 chr11 115025147 115025504 + 1.25 NA Intergenic L1MB3|LINE|L1 -308252 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 211.75-26 chr4 145705676 145705907 + 1.25 NA intron (NM_001080531, intron 2 of 5) MER50-int|LTR|ERV1 25587 NM_001080531 646603 NM_001080531 ENSG00000237136 C4orf51 - chromosome 4 open reading frame 51 protein-coding 270-3 chr11 113812784 113813235 + 1.25 NA TTS (NM_001346273) TTS (NM_001346273) 33213 NM_001101389 644672 Hs.705360 NM_001101389 ENSG00000228607 CLDN25 - claudin 25 protein-coding 171.75-4 chr1 88308722 88309234 + 1.25 NA Intergenic Intergenic -375166 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 399-2 chr21 46658536 46659126 + 1.25 NA exon (NM_001286677, exon 7 of 8) exon (NM_001286677, exon 7 of 8) 23157 NM_001242866 3275 Hs.154163 NM_001535 ENSG00000160310 PRMT2 HRMT1L1 protein arginine methyltransferase 2 protein-coding 190-33 chr20 5647623 5647808 + 1.25 NA Intergenic Intergenic -36709 NM_019593 56261 Hs.636359 NM_019593 ENSG00000125772 GPCPD1 EDI3|GDE5|GDPD6|PREI4 glycerophosphocholine phosphodiesterase 1 protein-coding 311.5-12 chr5 131020783 131021297 + 1.25 NA Intergenic L1ME4b|LINE|L1 144216 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 273.25-16 chr7 84981292 84981553 + 1.25 NA Intergenic L1PBa1|LINE|L1 140509 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 324.75-3 chr2 149345761 149346334 + 1.25 NA intron (NM_194317, intron 1 of 4) intron (NM_194317, intron 1 of 4) 15460 NM_194317 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 273 chr1 51839819 51840202 + 1.25 NA intron (NM_002525, intron 2 of 32) L1ME4a|LINE|L1 -3608 NR_031580 100313892 NR_031580 ENSG00000283899 MIR761 hsa-mir-761 microRNA 761 ncRNA 173.5-4 chr1 102559009 102559291 + 1.25 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 549346 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 319.25 chr16 63657306 63657672 + 1.25 NA Intergenic Intergenic 1464574 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 380-2 chr9 29053411 29053790 + 1.25 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 158699 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 343.5-4 chr2 24577146 24577631 + 1.25 NA intron (NM_001362955, intron 3 of 23) Kanga11a|DNA|TcMar-Tc2 -7089 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 192-45 chr4 43928505 43928788 + 1.25 NA Intergenic L2a|LINE|L2 -88215 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 277.5-19 chr7 48334586 48334891 + 1.25 NA intron (NM_152701, intron 27 of 61) intron (NM_152701, intron 27 of 61) 163280 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 250.5-15 chr2 120834343 120834643 + 1.25 NA intron (NM_005270, intron 2 of 13) MER74A|LTR|ERVL 42212 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 199.5-50 chr8 116959756 116959940 + 1.25 NA intron (NM_001172811, intron 2 of 9) L1MEc|LINE|L1 8873 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 371.5 chr1 47657423 47658078 + 1.25 NA Intergenic MIRb|SINE|MIR -220433 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 231.5-28 chr5 156614537 156614746 + 1.25 NA intron (NM_001128209, intron 5 of 7) intron (NM_001128209, intron 5 of 7) -235654 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 209.75-19 chr19 27681754 27681979 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr -111565 NR_110691 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 310.75-7 chr6 157130469 157130978 + 1.25 NA intron (NM_020732, intron 7 of 19) intron (NM_020732, intron 7 of 19) 94296 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 222.25-45 chr8 111782293 111782576 + 1.25 NA Intergenic Intergenic 405795 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 153.75-50 chr3 143978581 143978711 + 1.25 NA intron (NM_001134470, intron 1 of 2) (TA)n|Simple_repeat|Simple_repeat 5565 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 177.75-37 chr20 57331673 57331914 + 1.25 NA intron (NM_198265, intron 1 of 11) intron (NM_198265, intron 1 of 11) 1990 NM_012444 23626 Hs.159737 NM_012444 ENSG00000054796 SPO11 CT35|SPATA43|TOPVIA SPO11 initiator of meiotic double stranded breaks protein-coding 175.25-66 chr7 43887868 43888092 + 1.25 NA intron (NM_001077664, intron 1 of 5) L1ME4a|LINE|L1 -18463 NM_032014 64951 Hs.284286 NM_032014 ENSG00000062582 MRPS24 HSPC335|MRP-S24|S24mt|bMRP-47|bMRP47 mitochondrial ribosomal protein S24 protein-coding 154-106 chr8 118998998 118999240 + 1.25 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) 46856 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 309-2 chr10 66032290 66032842 + 1.25 NA intron (NM_001127384, intron 15 of 17) intron (NM_001127384, intron 15 of 17) 461141 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 336.5-5 chr3 89980192 89980566 + 1.25 NA Intergenic Intergenic 872758 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 150-43 chr2 176603116 176603347 + 1.25 NA Intergenic Intergenic -2179 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 210.25-25 chr22 11211901 11212101 + 1.25 NA Intergenic SAR|Satellite|Satellite -250472 NR_132320 102723780 NR_132320 FRG1FP - FSHD region gene 1 family member F, pseudogene pseudo 289.75-7 chr16 11422245 11422896 + 1.25 NA intron (NM_001370704, intron 42 of 66) intron (NM_001370704, intron 42 of 66) -42690 NR_110907 101927131 Hs.569654 NR_110907 ENSG00000262999 LOC101927131 - uncharacterized LOC101927131 ncRNA 224.75-34 chr5 129479377 129479695 + 1.25 NA intron (NM_133638, intron 2 of 22) L1ME2|LINE|L1 -18847 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 367.5-2 chr17 68277792 68278140 + 1.25 NA intron (NM_004694, intron 2 of 5) intron (NM_004694, intron 2 of 5) 13161 NM_001174166 9120 Hs.42645 NM_004694 ENSG00000108932 SLC16A6 MCT6|MCT7 solute carrier family 16 member 6 protein-coding 193.75-31 chr18 9290376 9290604 + 1.25 NA Intergenic Intergenic -44283 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 334.5 chr1 237340982 237341581 + 1.25 NA intron (NM_001035, intron 3 of 104) intron (NM_001035, intron 3 of 104) -129838 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 179.25-49 chr4 32812238 32812414 + 1.25 NA Intergenic Intergenic 461288 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 293.75-8 chr3 115488171 115488540 + 1.25 NA Intergenic Intergenic -135155 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 480-2 chr7 17747503 17747954 + 1.25 NA Intergenic Intergenic -188819 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 322.75-7 chrX 57380137 57380566 + 1.25 NA intron (NR_148564, intron 6 of 11) L2|LINE|L2 93497 NR_148564 158584 Hs.496205 NM_174912 ENSG00000165591 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 179-6 chr11 90280812 90280987 + 1.25 NA intron (NR_104190, intron 1 of 6) L2a|LINE|L2 29667 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 183-27 chr2 99165432 99165660 + 1.25 NA Intergenic L2|LINE|L2 10472 NM_001204830 51601 Hs.719172 NM_015929 ENSG00000144182 LIPT1 LIPT1D lipoyltransferase 1 protein-coding 397.75 chr14 88594015 88594873 + 1.25 NA promoter-TSS (NM_207662) promoter-TSS (NM_207662) 24 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 217.75-32 chr5 17673314 17673607 + 1.25 NA Intergenic Intergenic -17822 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 148.5-67 chr3 192559714 192559881 + 1.25 NA intron (NM_004113, intron 2 of 5) L1MC1|LINE|L1 44775 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 230-25 chr5 20978449 20978742 + 1.25 NA Intergenic L1MEb|LINE|L1 -363060 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 200.25-45 chr6 125404421 125404623 + 1.25 NA Intergenic Intergenic -102555 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 176.75-93 chrX 50445642 50445916 + 1.25 NA intron (NM_001013742, intron 1 of 27) L1PREC2|LINE|L1 25046 NM_001013742 139189 Hs.38132 NM_001013742 ENSG00000274588 DGKK - diacylglycerol kinase kappa protein-coding 386.75 chr20 6983015 6983632 + 1.25 NA Intergenic Intergenic 215637 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 400.75-3 chr5 24255261 24256140 + 1.25 NA Intergenic Intergenic 304352 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 340.75-2 chr2 178821079 178821585 + 1.25 NA Intergenic Intergenic -13909 NM_133432 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 341.75 chr13 34445870 34446383 + 1.25 NA intron (NR_047036, intron 2 of 2) intron (NR_047036, intron 2 of 2) 98083 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 196.5-34 chr3 174181392 174181777 + 1.25 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -260788 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 225.5-19 chr2 59650651 59650850 + 1.25 NA Intergenic Intergenic 433042 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 330.75-8 chr7 18285200 18285680 + 1.25 NA intron (NM_001321872, intron 2 of 11) L1ME4a|LINE|L1 -4652 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 198.75-50 chr8 123512843 123513156 + 1.25 NA intron (NM_001242463, intron 4 of 6) intron (NM_001242463, intron 4 of 6) 19144 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 323-3 chr13 69255095 69255604 + 1.25 NA intron (NR_125752, intron 1 of 3) L1MA2|LINE|L1 33003 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 171-12 chr11 46066870 46067039 + 1.25 NA intron (NR_147890, intron 5 of 18) L1ME3G|LINE|L1 53865 NM_001352029 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 246.25-2 chr1 172548301 172548583 + 1.25 NA intron (NM_014283, intron 1 of 23) L1M5|LINE|L1 15292 NM_014283 51430 Hs.204559 NM_014283 ENSG00000094975 SUCO C1orf9|CH1|OPT|SLP1 SUN domain containing ossification factor protein-coding 339.25-6 chrX 64438757 64439082 + 1.25 NA Intergenic LTR9|LTR|ERV1 -43467 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 240.5-8 chr14 38067336 38067611 + 1.25 NA Intergenic L1ME4b|LINE|L1 -140431 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 312.5-4 chr20 55413719 55414252 + 1.25 NA Intergenic L1MD1|LINE|L1 -9058 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 318.25-7 chr8 112692868 112693298 + 1.25 NA intron (NM_001363185, intron 11 of 66) L2a|LINE|L2 49590 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 172-23 chr14 62350530 62350771 + 1.25 NA Intergenic L1MA5A|LINE|L1 -210677 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 224.5-34 chr7 114613014 114613338 + 1.25 NA intron (NM_148898, intron 4 of 17) L1ME4b|LINE|L1 -40169 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 261-15 chr7 3022287 3022583 + 1.25 NA intron (NM_001324281, intron 1 of 25) L1MCa|LINE|L1 21432 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 192-26 chr18 70671869 70672108 + 1.25 NA Intergenic Intergenic -21034 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 216-32 chrX 99904853 99905160 + 1.25 NA Intergenic Intergenic 505267 NM_001105243 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 174.5-29 chr14 89044999 89045252 + 1.25 NA Intergenic Charlie4a|DNA|hAT-Charlie 220474 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 267.75-7 chr2 76613314 76613690 + 1.25 NA Intergenic L2c|LINE|L2 -372463 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 337.5-5 chr3 43139979 43140494 + 1.25 NA Intergenic Intergenic -34157 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 320.75-7 chr2 194614036 194614542 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger -116306 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 164.5-84 chr7 7876300 7876472 + 1.25 NA intron (NM_001302350, intron 4 of 4) L2a|LINE|L2 92366 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 250.75-5 chr12 61988679 61988997 + 1.25 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 204001 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 392.75 chr14 65725468 65725873 + 1.25 NA intron (NM_004480, intron 8 of 9) L2c|LINE|L2 254568 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 207.75-45 chr7 112959622 112959894 + 1.25 NA intron (NR_110162, intron 4 of 5) L1ME2|LINE|L1 -19883 NM_152556 154743 Hs.489734 NM_152556 ENSG00000164603 BMT2 C7orf60|SAMTOR base methyltransferase of 25S rRNA 2 homolog protein-coding 277.5-3 chr11 3176212 3176556 + 1.25 NA Intergenic MIRc|SINE|MIR -11074 NM_145638 114879 Hs.436166 NM_020896 ENSG00000021762 OSBPL5 OBPH1|ORP5 oxysterol binding protein like 5 protein-coding 202.5-12 chr11 128063915 128064168 + 1.25 NA Intergenic L1PREC2|LINE|L1 -144725 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 251.25-13 chr2 6841811 6842207 + 1.25 NA intron (NM_001256478, intron 3 of 3) HUERS-P3-int|LTR|ERV1 -1545 NR_126359 104326052 Hs.7155 NR_126359 NRIR lncRNA-CMPK2 negative regulator of interferon response ncRNA 204.25-50 chr7 124341552 124341833 + 1.25 NA intron (NR_110180, intron 3 of 3) Tigger1|DNA|TcMar-Tigger 10404 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 156-61 chr4 8905923 8906067 + 1.25 NA Intergenic Intergenic -34156 NM_001306142 3166 Hs.104134 NM_018942 ENSG00000215612 HMX1 H6|NKX5-3 H6 family homeobox 1 protein-coding 302.75-4 chr2 27784861 27785309 + 1.25 NA intron (NM_022128, intron 7 of 7) L1M5|LINE|L1 13366 NM_004891 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 358.5-3 chr5 75568542 75568959 + 1.25 NA 5' UTR (NM_001345922, exon 4 of 16) 5' UTR (NM_001345922, exon 4 of 16) -42726 NM_001276713 728780 Hs.370455 NM_001271529 ENSG00000189045 ANKDD1B - ankyrin repeat and death domain containing 1B protein-coding 166.5-60 chr4 47196791 47197004 + 1.25 NA intron (NM_000812, intron 4 of 8) L2c|LINE|L2 165330 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 198-39 chr6 132290305 132290497 + 1.25 NA Intergenic Intergenic 111074 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 370.25 chr2 62851193 62851793 + 1.25 NA intron (NM_001142615, intron 7 of 22) L2c|LINE|L2 144596 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 318.5-9 chr8 119793854 119794296 + 1.25 NA intron (NM_003184, intron 9 of 25) AluJb|SINE|Alu 38766 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 187.5-26 chr18 3497165 3497414 + 1.25 NA 3' UTR (NM_001242764, exon 10 of 10) 3' UTR (NM_001242764, exon 10 of 10) 31039 NR_110428 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 249.5-27 chr7 80477206 80477575 + 1.25 NA intron (NM_001102386, intron 4 of 7) intron (NM_001102386, intron 4 of 7) 34674 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 165.5-34 chr14 88507598 88507784 + 1.25 NA intron (NM_007039, intron 4 of 18) intron (NM_007039, intron 4 of 18) 47316 NM_007039 11099 Hs.437040 NM_007039 ENSG00000070778 PTPN21 PTPD1|PTPRL10 protein tyrosine phosphatase non-receptor type 21 protein-coding 350.25-3 chr22 34548259 34548711 + 1.25 NA Intergenic Intergenic 449431 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 185.5-51 chr4 129821583 129821779 + 1.25 NA intron (NR_151713, intron 7 of 16) intron (NR_151713, intron 7 of 16) 50062 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 257.25-17 chr3 159333625 159333891 + 1.25 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 51112 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 200.5-42 chr3 177511278 177511552 + 1.25 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 69494 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 271.5-14 chr5 29711561 29711819 + 1.25 NA Intergenic Intergenic -168870 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 160.75 chr1 22506021 22506243 + 1.25 NA exon (NM_001330398, exon 4 of 16) exon (NM_001330398, exon 4 of 16) 54281 NM_014870 9923 Hs.418966 NM_014870 ENSG00000184677 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 191-26 chr15 88338834 88339106 + 1.25 NA Intergenic L1MA4|LINE|L1 -82231 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 332.75 chr14 92269011 92269676 + 1.25 NA Intergenic L1MCa|LINE|L1 -53238 NM_153648 123041 Hs.385530 NM_153646 ENSG00000140090 SLC24A4 AI2A5|NCKX4|SHEP6|SLC24A2 solute carrier family 24 member 4 protein-coding 368-2 chr6 54996144 54996630 + 1.25 NA Intergenic Intergenic -110073 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 266-11 chr6 44086669 44087077 + 1.25 NA Intergenic Intergenic -12221 NR_125864 101929705 Hs.670378 NR_125864 ENSG00000237686 LOC101929705 - uncharacterized LOC101929705 ncRNA 298-5 chr4 36012694 36013128 + 1.25 NA intron (NR_146893, intron 35 of 36) intron (NR_146893, intron 35 of 36) 231028 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 219-8 chr2 101548478 101548742 + 1.25 NA Intergenic L1ME1|LINE|L1 -73498 NM_001367508 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 260.5-24 chrX 133634052 133634357 + 1.25 NA intron (NM_001164619, intron 5 of 6) L1MB8|LINE|L1 -218715 NM_001448 2239 Hs.58367 NM_001448 ENSG00000076716 GPC4 K-glypican glypican 4 protein-coding 345.75-3 chr5 2484954 2485350 + 1.25 NA Intergenic L1PA5|LINE|L1 -172951 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 191.5-10 chr10 50303017 50303254 + 1.25 NA Intergenic L1MCa|LINE|L1 -54525 NM_019893 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 234-12 chr5 24807711 24808050 + 1.25 NA Intergenic Intergenic 32703 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 274.25-7 chr2 229095637 229096014 + 1.25 NA intron (NM_001330157, intron 1 of 1) intron (NM_001330157, intron 1 of 1) 136267 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 386.5-3 chr4 43967725 43968434 + 1.25 NA Intergenic L1ME2z|LINE|L1 -48782 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 168.5-84 chr5 105813124 105813366 + 1.25 NA Intergenic Intergenic 713771 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 166.25-46 chr4 31836353 31836599 + 1.25 NA Intergenic Intergenic -160903 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 264 chr1 24719074 24719382 + 1.25 NA Intergenic AluJr|SINE|Alu -26219 NM_013943 25932 Hs.440544 NM_013943 ENSG00000169504 CLIC4 CLIC4L|H1|MTCLIC|huH1|p64H1 chloride intracellular channel 4 protein-coding 403.5-2 chr3 59022245 59022849 + 1.25 NA intron (NR_147235, intron 4 of 6) intron (NR_147235, intron 4 of 6) 27478 NM_198463 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 238.75-5 chr10 107565209 107565473 + 1.25 NA Intergenic L1MB8|LINE|L1 -400635 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 229.25-20 chr4 90319665 90319932 + 1.25 NA intron (NM_207491, intron 3 of 7) intron (NM_207491, intron 3 of 7) 84767 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 222.25-10 chr14 26067104 26067369 + 1.25 NA Intergenic UCON53|Unknown|Unknown 486194 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 317-5 chr5 66171648 66172165 + 1.25 NA intron (NM_139168, intron 10 of 12) MIRb|SINE|MIR 27071 NM_139168 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 260.25-18 chr4 65751153 65751498 + 1.25 NA Intergenic Intergenic -80830 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 256.75-24 chr8 87591387 87591757 + 1.25 NA Intergenic Intergenic 282443 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 246.5-10 chr18 45545905 45546196 + 1.25 NA intron (NM_001371319, intron 5 of 23) intron (NM_001371319, intron 5 of 23) -39014 NR_110899 101927980 Hs.591058 NR_110899 SLC14A2-AS1 - SLC14A2 antisense RNA 1 ncRNA 214 chr1 53448495 53448710 + 1.25 NA Intergenic MER21C|LTR|ERVL -8582 NR_002314 163742 Hs.99394 NR_002314 ENSG00000236253 SLC25A3P1 - solute carrier family 25 member 3 pseudogene 1 pseudo 217.5-11 chr12 39623612 39623849 + 1.25 NA Intergenic Intergenic -2453 NM_001031748 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 336.5-6 chr5 30684980 30685321 + 1.25 NA Intergenic L2b|LINE|L2 -508536 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 228.25-30 chr8 24792724 24793004 + 1.25 NA Intergenic Intergenic -120897 NM_005382 4741 Hs.458657 NM_005382 ENSG00000104722 NEFM NEF3|NF-M|NFM neurofilament medium protein-coding 321.5-6 chr6 131593247 131593605 + 1.25 NA intron (NM_015979, intron 24 of 30) intron (NM_015979, intron 24 of 30) 20200 NM_000045 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 279.75-20 chr8 135397148 135397594 + 1.25 NA Intergenic Intergenic -60085 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 300.5-4 chr13 20353114 20353600 + 1.25 NA Intergenic L1MEd|LINE|L1 80489 NR_039721 100616304 NR_039721 ENSG00000263978 MIR4499 - microRNA 4499 ncRNA 317.5-8 chr5 103143860 103144184 + 1.25 NA intron (NM_001345878, intron 5 of 28) L1MA3|LINE|L1 23721 NM_001345872 23262 Hs.212046 NM_015216 ENSG00000145725 PPIP5K2 CFAP160|DFNB100|HISPPD1|IP7K2|VIP2 diphosphoinositol pentakisphosphate kinase 2 protein-coding 391.75 chr1 115584263 115584673 + 1.25 NA Intergenic L1PA6|LINE|L1 -57502 NM_138959 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 202-10 chr14 38842861 38843143 + 1.25 NA intron (NR_039982, intron 2 of 4) intron (NR_039982, intron 2 of 4) -39594 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 197.75-51 chr5 28307851 28308155 + 1.25 NA Intergenic L1PA16|LINE|L1 -20338 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 197.25-31 chr2 155975397 155975682 + 1.25 NA Intergenic Intergenic 279392 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 188-13 chr11 36008803 36008987 + 1.25 NA intron (NM_001304264, intron 1 of 5) intron (NM_001304264, intron 1 of 5) -1203 NR_039769 100616311 NR_039769 ENSG00000263389 MIR3973 - microRNA 3973 ncRNA 186.25-28 chr2 211258226 211258460 + 1.25 NA Intergenic Intergenic 640772 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 286.5-3 chr10 90447754 90448264 + 1.25 NA intron (NR_110657, intron 3 of 6) L1ME1|LINE|L1 92796 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 303.75-5 chr2 222910366 222910701 + 1.25 NA intron (NM_004457, intron 4 of 16) intron (NM_004457, intron 4 of 16) 49497 NM_001354159 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 226-22 chr5 111314503 111314777 + 1.25 NA intron (NM_001744, intron 1 of 10) intron (NM_001744, intron 1 of 10) 90256 NM_001323376 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 238.25-7 chr12 38724622 38724836 + 1.25 NA intron (NM_153634, intron 12 of 19) intron (NM_153634, intron 12 of 19) 180862 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 333.75-7 chr9 24109254 24109746 + 1.25 NA Intergenic Intergenic -258899 NM_001351460 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 208.75-12 chr15 90403909 90404086 + 1.25 NA intron (NM_003870, intron 2 of 37) L1ME4b|LINE|L1 15755 NM_003870 8826 Hs.430551 NM_003870 ENSG00000140575 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 408.25-2 chr20 45731585 45732156 + 1.25 NA Intergenic L1M2c|LINE|L1 9523 NM_178455 391253 Hs.677891 NM_178455 ENSG00000149651 SPINT4 C20orf137|SPINT3|dJ601O1.1 serine peptidase inhibitor, Kunitz type 4 protein-coding 231.75-30 chr7 53914501 53914854 + 1.25 NA Intergenic L1MB7|LINE|L1 -102746 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 192.5-29 chr20 12563393 12563671 + 1.25 NA Intergenic Intergenic 373431 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 210-2 chr1 191646474 191646750 + 1.25 NA Intergenic Intergenic -418114 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 199.75-29 chr2 29820107 29820298 + 1.25 NA intron (NM_004304, intron 1 of 28) MLT1F1|LTR|ERVL-MaLR 101384 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 341.5-3 chr5 129245525 129245860 + 1.25 NA Intergenic Intergenic 148004 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 156-47 chr21 24838615 24838792 + 1.25 NA Intergenic L1MA9|LINE|L1 -1847 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 161.75-4 chr10 24453372 24453641 + 1.25 NA intron (NM_001321681, intron 1 of 13) UCON39|DNA|TcMar-Tigger 4092 NM_001321681 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 192.5-47 chr5 59629917 59630169 + 1.25 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -42418 NM_001364604 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 182.5-2 chr1 210033747 210034066 + 1.25 NA intron (NM_153262, intron 4 of 7) intron (NM_153262, intron 4 of 7) 95689 NM_001146264 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 401.75 chr7 110273848 110274385 + 1.25 NA Intergenic MER110|LTR|ERV1 -313903 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 183.5-38 chr21 14399004 14399292 + 1.25 NA Intergenic L1MA4|LINE|L1 -16002 NM_006948 6782 Hs.352341 NM_006948 ENSG00000155304 HSPA13 STCH heat shock protein family A (Hsp70) member 13 protein-coding 340 chr10 35551426 35551842 + 1.25 NA intron (NM_181698, intron 9 of 11) intron (NM_181698, intron 9 of 11) -53707 NM_153368 219770 Hs.638922 NM_153368 ENSG00000177291 GJD4 CX40.1 gap junction protein delta 4 protein-coding 223.75-20 chr4 45278212 45278439 + 1.25 NA Intergenic Intergenic -551691 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 238-2 chr1 105065444 105065716 + 1.25 NA Intergenic L1MA2|LINE|L1 553355 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 300-9 chr8 98613449 98613848 + 1.25 NA intron (NM_001256313, intron 4 of 8) L1MDa|LINE|L1 186690 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 423.5-2 chr8 131513145 131513809 + 1.25 NA Intergenic Intergenic -390616 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 314 chr1 109876491 109876885 + 1.25 NA Intergenic L1ME4a|LINE|L1 -34161 NM_172212 1435 Hs.173894 NM_000757 ENSG00000184371 CSF1 CSF-1|MCSF colony stimulating factor 1 protein-coding 276.25-11 chr6 38388725 38388972 + 1.25 NA intron (NM_052893, intron 7 of 11) intron (NM_052893, intron 7 of 11) -92748 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 399.25-2 chr4 43845289 43845755 + 1.25 NA Intergenic Intergenic -171339 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 233.5-19 chr3 189504016 189504357 + 1.25 NA Intergenic Intergenic -92560 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 195.75-51 chr4 62892319 62892720 + 1.25 NA Intergenic Intergenic -730754 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 360.75-2 chr14 30346688 30347278 + 1.25 NA Intergenic Intergenic -212140 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 220.25-10 chr13 61459777 61460271 + 1.25 NA Intergenic Intergenic -32078 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 219.5-9 chr12 91209564 91209893 + 1.25 NA Intergenic Intergenic -26911 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 424 chr5 6586395 6587139 + 1.25 NA non-coding (NR_024423, exon 5 of 5) non-coding (NR_024423, exon 5 of 5) 3491 NR_024424 255167 Hs.435515 NR_024423 ENSG00000250056 LINC01018 SRHC long intergenic non-protein coding RNA 1018 ncRNA 306-2 chr1 96004825 96005139 + 1.25 NA intron (NR_125991, intron 3 of 4) L1MC3|LINE|L1 12914 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 392.5 chr12 50718978 50719408 + 1.25 NA intron (NM_173602, intron 25 of 37) intron (NM_173602, intron 25 of 37) -44908 NM_005171 466 Hs.648565 NM_005171 ENSG00000123268 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 285.5-16 chr6 65121244 65121506 + 1.25 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -180043 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 204-7 chr11 66884227 66884557 + 1.25 NA intron (NM_001040716, intron 3 of 22) AluJb|SINE|Alu 23561 NM_022172 5091 Hs.89890 NM_000920 ENSG00000173599 PC PCB pyruvate carboxylase protein-coding 281.75-13 chr5 66545202 66545646 + 1.25 NA Intergenic L1ME1|LINE|L1 -33820 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 362.75-2 chr17 62992505 62992907 + 1.25 NA intron (NM_025185, intron 1 of 25) intron (NM_025185, intron 1 of 25) 26471 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 294-8 chr9 131645959 131646371 + 1.25 NA intron (NM_198679, intron 3 of 23) MIRb|SINE|MIR 63677 NM_198679 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 181.5-49 chr3 55420614 55420816 + 1.25 NA Intergenic L1ME3A|LINE|L1 60683 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 223.5-18 chr16 52093235 52093482 + 1.25 NA intron (NR_104655, intron 1 of 2) MIR1_Amn|SINE|MIR 8077 NR_104655 102467079 Hs.98466 NR_104655 ENSG00000261749 LINC02180 - long intergenic non-protein coding RNA 2180 ncRNA 268.5-19 chr4 54464214 54464768 + 1.25 NA Intergenic L1PA6|LINE|L1 131599 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 226.75 chr1 65523508 65523748 + 1.25 NA intron (NM_001003679, intron 2 of 19) Charlie13b|DNA|hAT-Charlie -2023 NM_001198687 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 301.5-19 chr8 131049190 131049663 + 1.25 NA Intergenic MLT1F|LTR|ERVL-MaLR -8517 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 161-11 chr10 48586524 48586765 + 1.25 NA intron (NM_001347738, intron 2 of 10) intron (NM_001347738, intron 2 of 10) 18429 NR_144645 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 361.25-2 chr15 99560442 99561336 + 1.25 NA Intergenic Intergenic -4528 NM_001352617 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 382.75 chr2 193322835 193323243 + 1.25 NA Intergenic Intergenic 573194 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 374.25 chr10 106437871 106438328 + 1.25 NA Intergenic Intergenic 297934 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 331.25-2 chr14 80483975 80484472 + 1.25 NA Intergenic AluJb|SINE|Alu -253166 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 256.5-5 chr18 12673250 12673635 + 1.25 NA non-coding (NR_073537, exon 12 of 13) non-coding (NR_073537, exon 12 of 13) 14703 NM_147163 56984 Hs.464652 NM_020232 ENSG00000128789 PSMG2 CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 proteasome assembly chaperone 2 protein-coding 402.25-2 chr15 69583866 69584472 + 1.25 NA Intergenic Intergenic -8031 NR_126438 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 324.25-8 chr5 121802082 121802656 + 1.25 NA Intergenic Intergenic -49513 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 342 chr1 51830900 51831399 + 1.25 NA intron (NM_001101662, intron 4 of 30) intron (NM_001101662, intron 4 of 30) 5253 NR_031580 100313892 NR_031580 ENSG00000283899 MIR761 hsa-mir-761 microRNA 761 ncRNA 473.25 chr5 102286835 102287380 + 1.25 NA intron (NM_180991, intron 2 of 12) intron (NM_180991, intron 2 of 12) 9177 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 276-2 chr1 109456097 109456320 + 1.25 NA Intergenic L1MD|LINE|L1 -10338 NM_001040709 284612 Hs.528366 NM_001006603 ENSG00000143028 SYPL2 MG29 synaptophysin like 2 protein-coding 283.75-3 chr17 72384062 72384506 + 1.25 NA Intergenic MER5B|DNA|hAT-Charlie 41473 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 223.25-28 chr5 108780630 108781033 + 1.25 NA intron (NM_005246, intron 2 of 19) L1MC1|LINE|L1 31883 NR_146155 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 223.25-33 chr8 85619558 85619926 + 1.25 NA Intergenic L1MEf|LINE|L1 35934 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 365.5 chr10 63412836 63413340 + 1.25 NA intron (NM_001322258, intron 1 of 24) intron (NM_001322258, intron 1 of 24) -17487 NR_134312 105378330 Hs.602852 NR_134312 LOC105378330 - uncharacterized LOC105378330 ncRNA 156.25-94 chr8 110017543 110017794 + 1.25 NA Intergenic L1MA1|LINE|L1 -41897 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 302-6 chr6 66112388 66112674 + 1.25 NA Intergenic Intergenic 324652 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 303.25-10 chr4 178022204 178022610 + 1.25 NA Intergenic Intergenic -114471 NR_108093 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 292.5-2 chr12 74323432 74323761 + 1.25 NA Intergenic L1MA6|LINE|L1 -30965 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 413.25-3 chr2 47903340 47903831 + 1.25 NA intron (NM_001190274, intron 1 of 22) intron (NM_001190274, intron 1 of 22) 2208 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 428.25 chr2 224310977 224311754 + 1.25 NA Intergenic Intergenic 90629 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 206.75-4 chr1 167968843 167969155 + 1.25 NA intron (NM_001017977, intron 3 of 18) intron (NM_001017977, intron 3 of 18) -29661 NR_031702 100313835 NR_031702 ENSG00000221545 MIR1255B2 MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2 microRNA 1255b-2 ncRNA 232.75-21 chr3 96559320 96559690 + 1.25 NA Intergenic L1ME2z|LINE|L1 199541 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 438.25-3 chr18 5277593 5278447 + 1.25 NA Intergenic L1MC4a|LINE|L1 17706 NM_001243702 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 170.25-66 chr7 13849337 13849497 + 1.25 NA Intergenic Intergenic 137097 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 299.5-8 chr3 88620665 88621061 + 1.25 NA Intergenic Intergenic 282407 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 153.5-50 chr2 135484298 135484642 + 1.25 NA intron (NM_001286569, intron 2 of 21) intron (NM_001286569, intron 2 of 21) 46115 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 229.75-6 chr11 92467735 92468102 + 1.25 NA intron (NM_001008781, intron 1 of 24) MER46C|DNA|TcMar-Tigger 115822 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 309.75-4 chr14 52627845 52628273 + 1.25 NA intron (NR_148417, intron 4 of 7) MER3|DNA|hAT-Charlie 67499 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 333.75-4 chr5 83750767 83751062 + 1.25 NA Intergenic L1M4|LINE|L1 -30059 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 214.25 chr1 19935354 19935630 + 1.25 NA Intergenic MLT1H|LTR|ERVL-MaLR -11875 NM_014589 30814 Hs.272372 NM_014589 ENSG00000188784 PLA2G2E GIIE sPLA2|sPLA2-IIE phospholipase A2 group IIE protein-coding 338.75-3 chr13 90438713 90439094 + 1.25 NA Intergenic L1MCb|LINE|L1 -54385 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 266.75-3 chr10 66035671 66035967 + 1.25 NA intron (NM_001127384, intron 15 of 17) intron (NM_001127384, intron 15 of 17) 464394 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 232.25-3 chr1 106955325 106955698 + 1.25 NA Intergenic Intergenic -101163 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 170.25-71 chr7 96681402 96681678 + 1.25 NA intron (NR_163952, intron 2 of 6) L1P4|LINE|L1 -17202 NR_038948 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 238.75-11 chr14 73432392 73432764 + 1.25 NA intron (NM_001005743, intron 1 of 12) MIR3|SINE|MIR 26002 NM_003744 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 243.25-25 chr5 66959573 66959836 + 1.25 NA intron (NM_001290226, intron 1 of 26) intron (NM_001290226, intron 1 of 26) 631 NM_001290226 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 431.75-2 chr9 32599837 32600217 + 1.25 NA Intergenic Intergenic -26843 NM_001199987 4712 Hs.493668 NM_002493 ENSG00000165264 NDUFB6 B17|CI NADH:ubiquinone oxidoreductase subunit B6 protein-coding 336.25-3 chr18 1736170 1736604 + 1.25 NA Intergenic Intergenic -376758 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 258-13 chr5 75157062 75157333 + 1.25 NA intron (NM_001164443, intron 11 of 24) MLT1F1-int|LTR|ERVL-MaLR 79681 NM_001164443 256006 Hs.482533 NM_001164443 ENSG00000145700 ANKRD31 - ankyrin repeat domain 31 protein-coding 450.75 chr18 71555874 71556347 + 1.25 NA intron (NR_038326, intron 1 of 4) intron (NR_038326, intron 1 of 4) 22846 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 326.75 chr2 176698076 176698444 + 1.25 NA Intergenic MIR1_Amn|SINE|MIR 60506 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 346-2 chr15 25594179 25594723 + 1.25 NA Intergenic Tigger17c|DNA|TcMar-Tigger -155395 NM_130839 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 165.5-15 chr10 111384984 111385217 + 1.25 NA Intergenic Intergenic 270809 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 202-20 chr2 72305364 72305585 + 1.25 NA intron (NR_135773, intron 19 of 21) intron (NR_135773, intron 19 of 21) -157612 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 301-13 chrX 55020913 55021431 + 1.25 NA exon (NM_000032, exon 5 of 11) exon (NM_000032, exon 5 of 11) 9805 NM_001037967 212 Hs.522666 NM_000032 ENSG00000158578 ALAS2 ALAS-E|ALASE|ANH1|ASB|SIDBA1|XLDPP|XLEPP|XLSA 5'-aminolevulinate synthase 2 protein-coding 355.75-4 chr12 13877109 13877858 + 1.25 NA intron (NM_000834, intron 1 of 12) intron (NM_000834, intron 1 of 12) 102873 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 246.5-5 chr11 38213527 38213864 + 1.25 NA Intergenic Intergenic 275094 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 313.25-8 chr7 132027417 132028079 + 1.25 NA Intergenic Intergenic 117528 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 339.5-3 chr11 101422328 101422840 + 1.25 NA Intergenic L1MA5|LINE|L1 97321 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 422 chr1 213141649 213142110 + 1.25 NA intron (NM_001136138, intron 5 of 13) L1PA15|LINE|L1 90638 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 286.25-4 chr12 25760210 25760484 + 1.25 NA Intergenic L1ME1|LINE|L1 -111769 NM_001352232 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 372.25-2 chr17 7527518 7527915 + 1.25 NA Intergenic MER61-int|LTR|ERV1 -21342 NM_003809 8742 Hs.54673 NM_003809 ENSG00000239697 TNFSF12 APO3L|DR3LG|TNLG4A|TWEAK TNF superfamily member 12 protein-coding 409.5 chr3 189602545 189603197 + 1.25 NA intron (NM_001329964, intron 1 of 13) intron (NM_001329964, intron 1 of 13) 6125 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 283.5-6 chr2 128997878 128998237 + 1.25 NA Intergenic MLT2A2|LTR|ERVL 133457 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 252.5-19 chr4 31383618 31383897 + 1.25 NA Intergenic L1M4c|LINE|L1 -122787 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 215.5-29 chr2 136887978 136888219 + 1.25 NA intron (NM_001316349, intron 2 of 27) intron (NM_001316349, intron 2 of 27) 122553 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 235.75-7 chr11 79387158 79387390 + 1.25 NA intron (NM_001098816, intron 1 of 33) L1ME3A|LINE|L1 14835 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 234.75-14 chr18 63078793 63079119 + 1.25 NA Intergenic L1MC5a|LINE|L1 240424 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 319.5-4 chr17 62330487 62330870 + 1.25 NA Intergenic Intergenic -39540 NM_001144933 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 337 chr10 71149097 71149437 + 1.25 NA Intergenic Intergenic -63303 NM_170744 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 380.25-4 chr5 153361069 153361761 + 1.25 NA Intergenic L2b|LINE|L2 -129109 NM_001258019 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 234.25-5 chr15 81833423 81833768 + 1.25 NA Intergenic Intergenic 212423 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 242.75-9 chr14 83877392 83877715 + 1.25 NA Intergenic Intergenic 1234921 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 357.5-2 chr2 100332045 100332537 + 1.25 NA Intergenic Intergenic -9558 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 155-109 chr8 125879277 125879539 + 1.25 NA Intergenic L1M3|LINE|L1 71789 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 194.75-48 chr7 103568697 103568973 + 1.25 NA intron (NM_005045, intron 31 of 64) intron (NM_005045, intron 31 of 64) -122628 NR_135802 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 218-27 chr8 77149563 77149825 + 1.25 NA Intergenic L1PA8|LINE|L1 -148650 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 225.25-35 chr7 25228399 25228772 + 1.25 NA promoter-TSS (NM_022150) promoter-TSS (NM_022150) -99 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 265.5 chr1 84886110 84886354 + 1.25 NA intron (NM_012152, intron 1 of 2) L1MA9|LINE|L1 6974 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 335.75-6 chr7 93545610 93546030 + 1.25 NA intron (NM_001164737, intron 2 of 15) intron (NM_001164737, intron 2 of 15) 13990 NM_001164738 799 Hs.489127 NM_001742 ENSG00000004948 CALCR CRT|CT-R|CTR|CTR1 calcitonin receptor protein-coding 355.25-5 chr8 92467711 92468135 + 1.25 NA Intergenic Intergenic 187571 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 290.25-5 chr10 86490568 86490991 + 1.25 NA intron (NM_001318328, intron 4 of 18) L1MC4|LINE|L1 31005 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 188-2 chr1 14480207 14480580 + 1.25 NA Intergenic L2c|LINE|L2 -60420 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 280.75-13 chr4 171486967 171487431 + 1.25 NA Intergenic Intergenic 151564 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 283-9 chr5 34833584 34834002 + 1.25 NA Intergenic L1ME3G|LINE|L1 -5371 NM_144725 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 173.75-51 chr4 106955984 106956256 + 1.25 NA intron (NM_014421, intron 1 of 3) intron (NM_014421, intron 1 of 3) 80193 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 147.5-67 chr4 61810866 61811113 + 1.25 NA intron (NM_001371343, intron 8 of 23) intron (NM_001371343, intron 8 of 23) 350776 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 444.25 chr13 80744590 80745043 + 1.25 NA Intergenic MIRb|SINE|MIR -273575 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 187-42 chr5 12285725 12286041 + 1.25 NA Intergenic Intergenic -288974 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 413.75 chr5 94455473 94455879 + 1.25 NA intron (NM_001145678, intron 12 of 20) intron (NM_001145678, intron 12 of 20) 162928 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 521-2 chr9 25007435 25008144 + 1.25 NA Intergenic L1MB1|LINE|L1 -461892 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 319.75-6 chr8 88703996 88704422 + 1.25 NA Intergenic Intergenic -376726 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 434 chr17 53165400 53165951 + 1.25 NA Intergenic Intergenic 180170 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 207.75-7 chr11 101542846 101543046 + 1.25 NA intron (NM_004621, intron 1 of 12) L1ME3B|LINE|L1 -23041 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 305.5-2 chr14 43307147 43307554 + 1.25 NA Intergenic MIRb|SINE|MIR 1199933 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 207-19 chr2 76147677 76147980 + 1.25 NA Intergenic L1MB8|LINE|L1 -436913 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 272-17 chr9 76208489 76208745 + 1.25 NA intron (NM_001190482, intron 20 of 36) L3|LINE|CR1 185809 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 235.25-12 chr2 54760036 54760368 + 1.25 NA intron (NM_001039753, intron 1 of 40) L1ME3G|LINE|L1 35190 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 365-2 chr4 135369626 135370059 + 1.25 NA Intergenic Intergenic -246283 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 330.5-7 chr4 125514691 125515349 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger 7761 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 391.25-2 chr2 213921575 213922023 + 1.25 NA intron (NR_047660, intron 10 of 14) L1PA14|LINE|L1 163732 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 217.5-24 chr2 155341669 155341880 + 1.25 NA Intergenic L1ME3|LINE|L1 643079 NM_002239 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 256.75 chr10 28192293 28192546 + 1.25 NA intron (NR_134518, intron 2 of 16) L1MC2|LINE|L1 89704 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 227.75-5 chr10 124829421 124829763 + 1.25 NA intron (NM_032182, intron 7 of 8) intron (NM_032182, intron 7 of 8) 27773 NM_032182 23172 Hs.280695 NM_032182 ENSG00000165660 ABRAXAS2 ABRO1|FAM175B|KIAA0157 abraxas 2, BRISC complex subunit protein-coding 298.25-7 chr3 95753543 95753981 + 1.25 NA Intergenic L1M1|LINE|L1 -70569 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 309.25 chr1 102159626 102159917 + 1.25 NA Intergenic L1ME2|LINE|L1 -162537 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 300.25-9 chr22 28712215 28712702 + 1.25 NA intron (NM_001349956, intron 4 of 13) intron (NM_001349956, intron 4 of 13) 29362 NM_001257387 11200 Hs.291363 NM_007194 ENSG00000183765 CHEK2 CDS1|CHK2|HuCds1|LFS2|PP1425|RAD53|hCds1 checkpoint kinase 2 protein-coding 183.5-61 chr5 124731810 124731979 + 1.25 NA intron (NM_020747, intron 1 of 8) intron (NM_020747, intron 1 of 8) 13218 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 288-8 chr3 177261484 177261998 + 1.25 NA Intergenic AluSz|SINE|Alu -32701 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 179.5-65 chr5 126298851 126299011 + 1.25 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -13756 NR_105040 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 206.25-39 chr7 1788377 1788656 + 1.25 NA Intergenic Intergenic -46206 NR_120508 101927125 Hs.633957 NR_120508 ENSG00000236081 ELFN1-AS1 MYCLo-2 ELFN1 antisense RNA 1 ncRNA 275.75-7 chr2 54348647 54349078 + 1.25 NA intron (NM_001369403, intron 2 of 3) intron (NM_001369403, intron 2 of 3) 17978 NM_001100396 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 395.75-2 chr4 154336661 154337202 + 1.25 NA intron (NM_001358235, intron 3 of 19) L3|LINE|CR1 154868 NM_001358235 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 400-2 chr5 153829068 153829852 + 1.25 NA Intergenic MIR3|SINE|MIR 69527 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 367.75-2 chr13 112152297 112152797 + 1.25 NA Intergenic Intergenic 8163 NR_134944 100506016 Hs.371110 NR_134944 LOC100506016 - uncharacterized LOC100506016 ncRNA 216.75-13 chr2 13906364 13906676 + 1.25 NA Intergenic MIR|SINE|MIR 494438 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 317.25-8 chr8 118717277 118717891 + 1.25 NA intron (NR_038210, intron 3 of 4) intron (NR_038210, intron 3 of 4) -95621 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 304 chr12 130296789 130297129 + 1.25 NA Intergenic L1PREC2|LINE|L1 -40928 NM_001190971 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 180-12 chr12 20030439 20030698 + 1.25 NA intron (NR_040098, intron 2 of 2) intron (NR_040098, intron 2 of 2) 15883 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 197.75-16 chr14 20734027 20734244 + 1.25 NA Intergenic Intergenic -11752 NM_006683 10876 Hs.304757 NM_006683 ENSG00000181562 EDDM3A EP3A|FAM12A|HE3-ALPHA|HE3A|HE3ALPHA|RAM1 epididymal protein 3A protein-coding 338.25-4 chr5 165087139 165087796 + 1.25 NA Intergenic AluSx1|SINE|Alu 617188 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 178.5-11 chr11 37211584 37211738 + 1.25 NA Intergenic L1M1|LINE|L1 -613382 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 172-73 chr6 19981071 19981248 + 1.25 NA Intergenic Intergenic 143789 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 252.25-11 chr4 91286585 91286890 + 1.25 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 990565 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 244.25-7 chr12 23897543 23897946 + 1.25 NA intron (NM_152989, intron 4 of 17) MamRep605|LTR?|LTR? 51926 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 476.5 chr5 39528498 39529130 + 1.25 NA Intergenic Intergenic 8383 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 254.5-23 chr5 63798089 63798407 + 1.25 NA Intergenic Intergenic 164044 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 225.25-20 chr2 200409056 200409415 + 1.25 NA intron (NM_001100423, intron 3 of 12) MamRTE1|LINE|RTE-BovB 100285 NM_001282744 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 286-4 chr2 146496310 146496655 + 1.25 NA Intergenic Intergenic -90575 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 277.75-16 chr5 80452928 80453198 + 1.25 NA intron (NR_146172, intron 13 of 20) intron (NR_146172, intron 13 of 20) -35037 NM_205548 167555 Hs.338182 NM_205548 ENSG00000152380 FAM151B UNQ9217 family with sequence similarity 151 member B protein-coding 323-2 chr12 9363388 9363814 + 1.25 NA Intergenic Intergenic -3863 NR_120479 101930452 Hs.734183 NR_120479 ENSG00000260423 LINC02367 - long intergenic non-protein coding RNA 2367 ncRNA 287.25 chr12 57391550 57391840 + 1.25 NA intron (NM_001351217, intron 1 of 21) L1MD2|LINE|L1 39348 NM_001351211 22864 Hs.443673 NM_014925 ENSG00000179912 R3HDM2 CAG6|PR01365 R3H domain containing 2 protein-coding 179.5-73 chr7 108967847 108968009 + 1.25 NA Intergenic Intergenic -83341 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 291.5-10 chr5 114633638 114633942 + 1.25 NA intron (NR_130785, intron 3 of 12) L2a|LINE|L2 57749 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 259-5 chr18 60983503 60983810 + 1.25 NA Intergenic Intergenic -349774 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 363 chr1 9821983 9822456 + 1.25 NA intron (NM_001009566, intron 1 of 18) intron (NM_001009566, intron 1 of 18) 2307 NM_001009566 22883 Hs.29665 NM_014944 ENSG00000171603 CLSTN1 ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 284.75-12 chr3 190756106 190756423 + 1.25 NA Intergenic L1MC1|LINE|L1 106430 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 239.25-6 chr11 24378860 24379204 + 1.25 NA Intergenic LTR85a|LTR|Gypsy? -118021 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 187.25-31 chr18 62263328 62263528 + 1.25 NA intron (NR_144409, intron 18 of 31) intron (NR_144409, intron 18 of 31) -61859 NM_001270949 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 182.5-12 chr12 20852502 20852702 + 1.25 NA intron (NM_001349920, intron 1 of 13) L1M3|LINE|L1 30054 NM_001349920 28234 Hs.504966 NM_019844 ENSG00000111700 SLCO1B3 HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 solute carrier organic anion transporter family member 1B3 protein-coding 308-3 chr11 24600807 24601266 + 1.25 NA intron (NM_001252008, intron 1 of 11) MLT1E2|LTR|ERVL-MaLR 103983 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 232-12 chr14 62695871 62696195 + 1.25 NA Intergenic Intergenic 349425 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 169-74 chr8 133141059 133141308 + 1.25 NA Intergenic (TAATA)n|Simple_repeat|Simple_repeat -38581 NM_001282965 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 273.5-4 chr15 69550642 69551145 + 1.25 NA Intergenic Intergenic -10827 NR_026979 145837 Hs.410126 NR_026979 DRAIC - downregulated RNA in cancer, inhibitor of cell invasion and migration ncRNA 265.5-20 chr7 45254813 45255139 + 1.25 NA Intergenic ERVL-B4-int|LTR|ERVL 97185 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 197-42 chr8 84346697 84346981 + 1.25 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -68645 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 349 chr14 44940364 44940692 + 1.25 NA intron (NM_017658, intron 2 of 4) intron (NM_017658, intron 2 of 4) 20957 NM_001308112 54813 Hs.550906 NM_017658 ENSG00000179454 KLHL28 BTBD5 kelch like family member 28 protein-coding 207.75-19 chr2 66005798 66006123 + 1.25 NA Intergenic MSTB2|LTR|ERVL-MaLR 352368 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 333.25-2 chr5 104238937 104239467 + 1.25 NA Intergenic Intergenic -676413 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 196-4 chr1 193665057 193665219 + 1.25 NA Intergenic Intergenic 360393 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 290.25-13 chr8 137974376 137974727 + 1.25 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 108994 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 174.25-77 chr9 82383415 82383577 + 1.25 NA Intergenic Intergenic 394724 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 259.5-7 chr2 31510862 31511228 + 1.25 NA Intergenic L1ME1|LINE|L1 69893 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 281.25-14 chr8 105331587 105332027 + 1.25 NA intron (NM_001362837, intron 1 of 7) intron (NM_001362837, intron 1 of 7) 12264 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 152.75-17 chr11 26010798 26010997 + 1.25 NA Intergenic L1MD1|LINE|L1 -178226 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 324-6 chr8 41470331 41470622 + 1.25 NA Intergenic Intergenic -19920 NM_001362979 51125 Hs.654773 NM_016099 ENSG00000147533 GOLGA7 GCP16|GOLGA3AP1|GOLGA7A|HSPC041 golgin A7 protein-coding 169-6 chr10 16704871 16705043 + 1.25 NA intron (NM_152724, intron 6 of 7) L1MB3|LINE|L1 112467 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 225.5-2 chr1 114469565 114469934 + 1.25 NA intron (NM_015906, intron 1 of 19) intron (NM_015906, intron 1 of 19) 41454 NM_033020 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 233.75-27 chr5 114973732 114974019 + 1.25 NA Intergenic L1MC3|LINE|L1 196033 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 155.5-91 chr6 67737438 67737651 + 1.25 NA Intergenic L1P4|LINE|L1 -317807 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 241.75-21 chr5 161210498 161210720 + 1.25 NA Intergenic L1ME1|LINE|L1 -271983 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 267.75-9 chr20 60825350 60825667 + 1.25 NA Intergenic L1MD3|LINE|L1 -253556 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 232.5-25 chr20 32039261 32039538 + 1.25 NA Intergenic L1ME2z|LINE|L1 -12843 NM_002110 3055 Hs.655210 NM_002110 ENSG00000101336 HCK JTK9|p59Hck|p61Hck HCK proto-oncogene, Src family tyrosine kinase protein-coding 184.75-19 chr12 47116424 47116693 + 1.25 NA intron (NM_001281429, intron 2 of 2) intron (NM_001281429, intron 2 of 2) -36599 NM_001370299 347902 Hs.121520 NM_181847 ENSG00000139211 AMIGO2 ALI1|AMIGO-2|DEGA adhesion molecule with Ig like domain 2 protein-coding 202.75-28 chr21 30184421 30184602 + 1.25 NA Intergenic AluSq2|SINE|Alu -17706 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 277.5-15 chr5 8599511 8599807 + 1.25 NA Intergenic Intergenic 138734 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 157.25-32 chr15 72298220 72298358 + 1.25 NA intron (NM_052840, intron 3 of 12) intron (NM_052840, intron 3 of 12) 8026 NM_001172685 60677 Hs.348342 NM_052840 ENSG00000140488 CELF6 BRUNOL6 CUGBP Elav-like family member 6 protein-coding 222-23 chr7 3533817 3534116 + 1.25 NA intron (NM_152744, intron 1 of 44) L1MB1|LINE|L1 232714 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 261-6 chr11 74645426 74645898 + 1.25 NA Intergenic MIRb|SINE|MIR 53080 NM_001363597 10714 Hs.82502 NM_006591 ENSG00000077514 POLD3 P66|P68|PPP1R128 DNA polymerase delta 3, accessory subunit protein-coding 281.75-8 chr2 119328998 119329430 + 1.25 NA intron (NM_001322330, intron 2 of 5) L1MEc|LINE|L1 37528 NM_001322330 130355 Hs.99488 NM_001017927 ENSG00000186132 C2orf76 AIM29 chromosome 2 open reading frame 76 protein-coding 254.25-5 chr16 19608955 19609312 + 1.25 NA intron (NM_001300743, intron 11 of 27) MIR|SINE|MIR 53430 NM_001365294 57020 Hs.654964 NM_020314 ENSG00000103544 VPS35L C16orf62 VPS35 endosomal protein sorting factor like protein-coding 320.5-3 chr12 18193001 18193471 + 1.25 NA Intergenic L1MEg|LINE|L1 -68304 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 222.75-11 chr14 56837786 56838168 + 1.25 NA intron (NR_146411, intron 2 of 2) intron (NR_146411, intron 2 of 2) 24819 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 248.25-7 chr2 15134311 15134655 + 1.25 NA Intergenic Intergenic 426851 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 324.25-2 chr10 81846472 81846774 + 1.25 NA Intergenic Intergenic -28571 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 251-4 chr14 72987028 72987259 + 1.25 NA promoter-TSS (NM_001281735) promoter-TSS (NM_001281735) -187 NM_178441 53349 Hs.335106 NM_021260 ENSG00000165861 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger FYVE-type containing 1 protein-coding 408.5-3 chr6 129341474 129342117 + 1.25 NA intron (NM_000426, intron 29 of 64) intron (NM_000426, intron 29 of 64) 368382 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 163-29 chr14 61475879 61476043 + 1.25 NA intron (NM_006255, intron 9 of 13) intron (NM_006255, intron 9 of 13) 94233 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 361.25-5 chr4 68016607 68016993 + 1.25 NA Intergenic Intergenic -19361 NR_033737 644759 Hs.646883 NR_033737 ENSG00000229009 TMPRSS11GP - transmembrane serine protease 11G, pseudogene pseudo 441 chr4 174148830 174149325 + 1.25 NA intron (NR_125896, intron 1 of 4) intron (NR_125896, intron 1 of 4) 71321 NR_125896 101928509 Hs.147719 NR_125896 ENSG00000248174 LINC02268 - long intergenic non-protein coding RNA 2268 ncRNA 215.5-50 chr7 157503484 157503867 + 1.25 NA Intergenic MIRb|SINE|MIR 37444 NR_110157 101927914 Hs.623826 NR_110157 ENSG00000234210 LOC101927914 - uncharacterized LOC101927914 ncRNA 263-14 chr8 85085203 85085565 + 1.25 NA Intergenic Intergenic -21854 NM_001349636 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 365.5-3 chr3 22484904 22485397 + 1.25 NA Intergenic Intergenic 528011 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 307.75 chr1 209418202 209418526 + 1.25 NA Intergenic Intergenic -10456 NR_145436 642587 Hs.510543 NR_145433 ENSG00000230937 MIR205HG LINC00510|NPC-A-5 MIR205 host gene ncRNA 273.5-6 chr21 15120366 15120756 + 1.25 NA Intergenic Intergenic -55561 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 242-23 chr7 115363512 115363950 + 1.25 NA Intergenic L1M3c|LINE|L1 -132376 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 283.5-5 chr2 47470037 47470419 + 1.25 NA intron (NM_000251, intron 10 of 15) AluSp|SINE|Alu -57309 NR_120602 644093 Hs.734158 NR_120602 ENSG00000235760 HCG2040054 - uncharacterized LOC644093 ncRNA 242.25-4 chr10 82732922 82733300 + 1.25 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -500191 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 266.75-12 chr3 148070933 148071319 + 1.25 NA Intergenic Intergenic -7033 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 222.5-45 chr6 50597142 50597350 + 1.25 NA Intergenic Intergenic -116298 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 314-8 chr5 128989792 128990334 + 1.25 NA intron (NM_001017372, intron 3 of 9) intron (NM_001017372, intron 3 of 9) 24575 NM_001017372 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 205.5-29 chr3 39054780 39055069 + 1.25 NA intron (NM_001346228, intron 1 of 18) intron (NM_001346228, intron 1 of 18) 2632 NM_001346228 57599 Hs.109778 NM_020839 ENSG00000114742 WDR48 P80|SPG60|UAF1 WD repeat domain 48 protein-coding 1623.75 chr5 49657133 49659307 + 1.25 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 783068 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 262.75-21 chr7 106486286 106486668 + 1.25 NA Intergenic Intergenic 174681 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 263.5-21 chr8 25799972 25800438 + 1.25 NA Intergenic Intergenic 245208 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 236.5-3 chr11 46038350 46038673 + 1.25 NA intron (NR_147890, intron 5 of 18) intron (NR_147890, intron 5 of 18) 82308 NM_001352029 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 174.75-9 chr10 36235308 36235502 + 1.25 NA Intergenic L1MB1|LINE|L1 457103 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 344.25-8 chr7 7327361 7327801 + 1.25 NA Intergenic Intergenic 72427 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 359-3 chr3 96269703 96270110 + 1.25 NA Intergenic Intergenic -90058 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 184-47 chr6 67694820 67694989 + 1.25 NA Intergenic Intergenic -360447 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 519.5-2 chr4 93235996 93236802 + 1.25 NA intron (NM_001286838, intron 6 of 14) LTR80A|LTR|ERVL -592354 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 157.75-5 chr1 118053135 118053352 + 1.25 NA intron (NM_206996, intron 20 of 48) intron (NM_206996, intron 20 of 48) 123504 NM_006784 10885 Hs.310809 NM_006784 ENSG00000065183 WDR3 DIP2|UTP12 WD repeat domain 3 protein-coding 278-8 chr4 61384895 61385196 + 1.25 NA intron (NM_001371343, intron 2 of 23) L1MB7|LINE|L1 182873 NM_001371342 231-8 chr15 70203555 70203878 + 1.25 NA Intergenic Intergenic -105799 NM_020908 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 291.5-7 chr3 56828516 56828969 + 1.25 NA intron (NM_001128615, intron 4 of 12) intron (NM_001128615, intron 4 of 12) -26793 NM_019555 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 270.75-21 chr5 132887694 132888049 + 1.25 NA exon (NM_014423, exon 16 of 21) exon (NM_014423, exon 16 of 21) 14203 NM_052971 116842 Hs.337588 NM_052971 ENSG00000164406 LEAP2 LEAP-2 liver enriched antimicrobial peptide 2 protein-coding 246-8 chr4 41769937 41770254 + 1.25 NA Intergenic L1ME4c|LINE|L1 -21125 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 328.25 chr1 197185820 197186207 + 1.25 NA intron (NM_194314, intron 4 of 9) L1MC1|LINE|L1 14529 NM_194314 360023 Hs.529439 NM_194314 ENSG00000177888 ZBTB41 FRBZ1|ZNF924 zinc finger and BTB domain containing 41 protein-coding 160.5-108 chr7 122337496 122337693 + 1.25 NA intron (NM_001167940, intron 28 of 29) intron (NM_001167940, intron 28 of 29) -32844 NM_001024613 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 288.25-8 chr3 108163121 108163374 + 1.25 NA intron (NM_018010, intron 10 of 10) intron (NM_018010, intron 10 of 10) 37426 NR_110028 101929623 Hs.570653 NR_110028 ENSG00000271856 LINC01215 - long intergenic non-protein coding RNA 1215 ncRNA 176-64 chr7 125518449 125518757 + 1.25 NA Intergenic Intergenic -254312 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 327.25-8 chrUn_GL000216v2 149476 149864 + 1.25 NA NA BSR/Beta|Satellite|Satellite NA NA 284.75-13 chr4 100571424 100571771 + 1.25 NA Intergenic MIRb|SINE|MIR -53575 NM_016242 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 177-38 chr22 39485846 39486070 + 1.25 NA intron (NM_002409, intron 1 of 1) intron (NM_002409, intron 1 of 1) -1266 NM_001098270 4248 Hs.276808 NM_002409 ENSG00000128268 MGAT3 GNT-III|GNT3 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase protein-coding 483.75 chr7 52204652 52205262 + 1.25 NA Intergenic Intergenic -811701 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 267.5-23 chr7 87882584 87883071 + 1.25 NA intron (NM_001318060, intron 2 of 10) L1MB3|LINE|L1 6334 NM_001318061 10926 Hs.485380 NM_006716 ENSG00000006634 DBF4 ASK|CHIF|DBF4A|ZDBF1 DBF4 zinc finger protein-coding 270.75-17 chr3 32656499 32656747 + 1.25 NA Intergenic L1MC5|LINE|L1 -28565 NR_046352 25904 Hs.444851 NM_015442 ENSG00000182973 CNOT10 - CCR4-NOT transcription complex subunit 10 protein-coding 322.25-6 chr5 141042463 141043007 + 1.25 NA Intergenic Intergenic -8641 NM_013340 29930 Hs.278950 NM_013340 ENSG00000171815 PCDHB1 PCDH-BETA1 protocadherin beta 1 protein-coding 462.5 chr3 23123786 23124183 + 1.25 NA Intergenic Intergenic 78594 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 306.75-11 chr8 105245379 105245771 + 1.25 NA Intergenic ERVL-E-int|LTR|ERVL -72863 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 194.25-12 chr16 63334959 63335146 + 1.25 NA Intergenic MER119|DNA|hAT-Charlie -1298614 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 301.75-12 chr7 11843151 11843584 + 1.25 NA Intergenic L1MB7|LINE|L1 -11169 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 172.25-73 chr8 121571120 121571461 + 1.25 NA Intergenic Intergenic -68056 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 232.25-25 chr3 62962122 62962482 + 1.25 NA Intergenic MamGypLTR1a|LTR|Gypsy -86886 NM_183393 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 147-39 chr18 71897790 71898015 + 1.25 NA Intergenic THE1D|LTR|ERVL-MaLR -115676 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 358-5 chr6 150645766 150646328 + 1.25 NA intron (NM_001329804, intron 2 of 17) L1ME3D|LINE|L1 13083 NR_138140 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 194.75-40 chr5 148939413 148939755 + 1.25 NA Intergenic MLT1I|LTR|ERVL-MaLR 112991 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 252.75-26 chr6 99589833 99590180 + 1.25 NA Intergenic Intergenic -16768 NM_021620 59336 Hs.287386 NM_021620 ENSG00000112238 PRDM13 MU-MB-20.220|PFM10 PR/SET domain 13 protein-coding 232.75-27 chr5 65224542 65224782 + 1.25 NA intron (NR_135689, intron 18 of 25) intron (NR_135689, intron 18 of 25) 257258 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 348.5-6 chr7 119822371 119822892 + 1.25 NA intron (NR_131960, intron 1 of 4) L1M2|LINE|L1 84744 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 234.75-6 chr10 61500900 61501198 + 1.25 NA Intergenic Intergenic 21008 NR_120645 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 290.75-3 chr17 27078743 27079057 + 1.25 NA intron (NR_135673, intron 1 of 3) intron (NR_135673, intron 1 of 3) 10341 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 235-5 chr10 107097586 107097784 + 1.25 NA intron (NM_001206569, intron 1 of 25) LTR33|LTR|ERVL 67021 NM_001206570 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 159.5-104 chr9 76679710 76679850 + 1.25 NA intron (NM_001308048, intron 9 of 17) L1MB2|LINE|L1 12635 NM_001308049 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 351.75 chr1 210953636 210954035 + 1.25 NA intron (NM_002238, intron 6 of 10) L2c|LINE|L2 179539 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 220.5-18 chr18 9202369 9202733 + 1.25 NA intron (NM_001204056, intron 3 of 11) intron (NM_001204056, intron 3 of 11) 64988 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 210.75 chr1 108141939 108142213 + 1.25 NA intron (NM_013386, intron 8 of 9).2 L1MB4|LINE|L1 50759 NM_213651 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1|SCAMC1 solute carrier family 25 member 24 protein-coding 319.75-5 chr8 86994815 86995294 + 1.25 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 128639 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 467 chr3 27444691 27445345 + 1.25 NA intron (NM_001258380, intron 3 of 23) L1MEc|LINE|L1 11760 NM_001258380 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 347.5-6 chr21 16877855 16878289 + 1.25 NA Intergenic L2|LINE|L2 287835 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 190.75-61 chr6 103218599 103218814 + 1.25 NA Intergenic Intergenic 1640840 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 209.25-11 chr13 22301944 22302204 + 1.25 NA Intergenic L1MEc|LINE|L1 91789 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 231-6 chr12 25026966 25027368 + 1.25 NA intron (NM_001321724, intron 10 of 17) L1MB7|LINE|L1 -25061 NR_159367 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 148.75-67 chr3 192581990 192582299 + 1.25 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 67122 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 246.25-16 chr14 71568515 71568857 + 1.25 NA intron (NM_001354289, intron 5 of 23) MER41B|LTR|ERV1 -17612 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 336-4 chr5 19337013 19337353 + 1.25 NA Intergenic Intergenic 549089 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 160.75-87 chr4 153633536 153633724 + 1.25 NA intron (NM_001131007, intron 32 of 34) intron (NM_001131007, intron 32 of 34) -6538 NR_134873 100419170 Hs.382102 NR_134873 ENSG00000250771 LOC100419170 - toll like receptor 2 pseudogene pseudo 340.25-5 chr8 87135742 87136194 + 1.25 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 269553 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 278.5-5 chr17 61967531 61967799 + 1.25 NA intron (NM_005121, intron 18 of 29) MIR3|SINE|MIR -39683 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 296-5 chr2 52102837 52103253 + 1.25 NA intron (NR_135237, intron 7 of 10) L1MC1|LINE|L1 -267603 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 220.5-37 chr8 36936547 36936760 + 1.25 NA TTS (NR_134267) TTS (NR_134267) 152279 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 256.5-9 chr2 9414360 9414628 + 1.25 NA intron (NR_134953, intron 1 of 4) intron (NR_134953, intron 1 of 4) 8097 NM_001319068 9270 Hs.467662 NM_004763 ENSG00000119185 ITGB1BP1 ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B integrin subunit beta 1 binding protein 1 protein-coding 273.75-12 chr8 127549583 127549915 + 1.25 NA Intergenic Intergenic -67610 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 324.25-7 chr4 183853702 183854042 + 1.25 NA intron (NR_132761, intron 1 of 2) intron (NR_132761, intron 1 of 2) -51435 NM_020225 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 234.75-9 chr13 92373356 92373546 + 1.25 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -21244 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 293.25-6 chr2 97644757 97645244 + 1.25 NA Intergenic Intergenic -1062 NM_001862 1329 Hs.1342 NM_001862 ENSG00000135940 COX5B COXVB cytochrome c oxidase subunit 5B protein-coding 356.75-3 chr20 42842711 42843091 + 1.25 NA intron (NM_133170, intron 2 of 31) MLT1A0|LTR|ERVL-MaLR -125842 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 175.25-55 chr5 118532991 118533213 + 1.25 NA intron (NR_104610, intron 1 of 9) intron (NR_104610, intron 1 of 9) 29015 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 232-15 chr2 20839041 20839262 + 1.25 NA Intergenic L1PB4|LINE|L1 -16021 NM_001282719 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 452.5 chr9 85470170 85470720 + 1.25 NA Intergenic AluJb|SINE|Alu 271584 NM_015239 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 228.75-27 chr9 37604320 37604608 + 1.25 NA intron (NM_001371225, intron 1 of 15) intron (NM_001371225, intron 1 of 15) 1235 NM_001371225 242-7 chr12 13049309 13049575 + 1.25 NA intron (NM_020853, intron 1 of 12) AluSx1|SINE|Alu 5061 NM_020853 57613 Hs.132660 NM_020853 ENSG00000084444 FAM234B KIAA1467 family with sequence similarity 234 member B protein-coding 222.25-37 chr5 87178765 87179102 + 1.25 NA intron (NR_105018, intron 2 of 3) L1M5|LINE|L1 58785 NR_105018 101929380 NR_105018 LOC101929380 - uncharacterized LOC101929380 ncRNA 233.25-28 chr6 83691692 83692024 + 1.25 NA intron (NM_001256717, intron 2 of 29) Tigger19a|DNA|TcMar-Tigger 16701 NM_001363677 9892 Hs.368046 NM_014841 ENSG00000065609 SNAP91 AP180|CALM synaptosome associated protein 91 protein-coding 470 chr2 156654164 156654863 + 1.25 NA Intergenic Intergenic 218134 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 249.5-7 chr12 95714194 95714556 + 1.25 NA intron (NM_001329701, intron 3 of 9) intron (NM_001329701, intron 3 of 9) 65120 NR_077225 100132594 Hs.676211 NR_077225 ENSG00000257150 PGAM1P5 - phosphoglycerate mutase 1 pseudogene 5 pseudo 262-8 chr5 79634922 79635299 + 1.25 NA intron (NM_001349553, intron 6 of 16) intron (NM_001349553, intron 6 of 16) 22669 NM_001349554 167153 Hs.418198 NM_173797 ENSG00000164329 TENT2 APD4|GLD2|PAPD4|TUT2 terminal nucleotidyltransferase 2 protein-coding 212-41 chr8 99788707 99788992 + 1.25 NA intron (NM_017890, intron 43 of 61) intron (NM_017890, intron 43 of 61) 104858 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 230.5-9 chr12 41556092 41556427 + 1.25 NA intron (NM_001164595, intron 7 of 9) intron (NM_001164595, intron 7 of 9) 118520 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 195.75-16 chr12 42345186 42345396 + 1.25 NA intron (NM_001364830, intron 2 of 6) intron (NM_001364830, intron 2 of 6) 13493 NM_001364834 51535 Hs.444157 NM_016488 ENSG00000134283 PPHLN1 CR|HSPC206|HSPC232 periphilin 1 protein-coding 207-23 chr3 10537428 10537667 + 1.25 NA intron (NM_001353564, intron 1 of 20) L1MD2|LINE|L1 -31961 NM_001330611 491 Hs.268942 NM_001683 ENSG00000157087 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase plasma membrane Ca2+ transporting 2 protein-coding 386.75-3 chr4 60097226 60097829 + 1.25 NA Intergenic Intergenic -825092 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 369.25-3 chr20 8616931 8617257 + 1.25 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) -214091 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 219.5-18 chr2 144322659 144322947 + 1.25 NA intron (NM_001354351, intron 1 of 15) Charlie1a|DNA|hAT-Charlie 9468 NM_001354355 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 292.75-11 chr9 83101567 83101873 + 1.25 NA Intergenic Tigger17a|DNA|TcMar-Tigger -38578 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 199-24 chr3 52128327 52128716 + 1.25 NA intron (NM_015426, intron 7 of 10) intron (NM_015426, intron 7 of 10) 25902 NM_001161580 25886 Hs.476306 NM_015426 ENSG00000164087 POC1A PIX2|SOFT|WDR51A POC1 centriolar protein A protein-coding 278.25-14 chr5 74512283 74512695 + 1.25 NA intron (NR_126354, intron 1 of 2) intron (NR_126354, intron 1 of 2) 24487 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 393.5-2 chr6 21144996 21145435 + 1.25 NA intron (NM_017774, intron 13 of 15) intron (NM_017774, intron 13 of 15) 366677 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 233.75-35 chr9 74649199 74649418 + 1.25 NA intron (NM_006914, intron 4 of 9) intron (NM_006914, intron 4 of 9) 33774 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 192.75-2 chr1 210063042 210063379 + 1.25 NA intron (NM_153262, intron 4 of 7) L1M5|LINE|L1 124993 NM_001146264 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 444 chr3 82613815 82614301 + 1.25 NA Intergenic (TCTC)n|Simple_repeat|Simple_repeat 627916 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 414.5 chr2 163771539 163772105 + 1.25 NA Intergenic Intergenic -35814 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 321-2 chr10 115905948 115906393 + 1.25 NA intron (NM_207303, intron 28 of 28) Charlie15b|DNA|hAT-Charlie 288619 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 185-30 chr18 40239303 40239522 + 1.25 NA Intergenic Intergenic 173126 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 176.75-44 chr21 28706838 28707080 + 1.25 NA Intergenic Intergenic 167641 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 233.75-16 chr22 31990774 31991108 + 1.25 NA intron (NR_149128, intron 4 of 4) intron (NR_149128, intron 4 of 4) 20118 NR_149128 105372999 Hs.512525 NR_149128 LINC02558 - long intergenic non-protein coding RNA 2558 ncRNA 367.5 chr1 100736296 100736883 + 1.25 NA intron (NM_080682, intron 7 of 7) intron (NM_080682, intron 7 of 7) 16847 NM_001078 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 183.75-74 chr5 116804335 116804542 + 1.25 NA Intergenic Intergenic -42229 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 162.5-75 chr6 122798797 122799115 + 1.25 NA intron (NM_001286138, intron 2 of 6) intron (NM_001286138, intron 2 of 6) 9698 NM_006714 10924 Hs.486357 NM_006714 ENSG00000172594 SMPDL3A ASM3A|ASML3a|yR36GH4.1 sphingomyelin phosphodiesterase acid like 3A protein-coding 160.25-4 chr1 156236951 156237268 + 1.25 NA intron (NM_001199662, intron 4 of 6) FLAM_A|SINE|Alu -5075 NM_199173 632 Hs.654541 NM_199173 ENSG00000242252 BGLAP BGP|OC|OCN bone gamma-carboxyglutamate protein protein-coding 146.5-113 chrX 69226152 69226365 + 1.25 NA Intergenic L1MB7|LINE|L1 46701 NR_103715 100996279 NR_103715 ENSG00000215162 LINC00269 CXorf62|NCRNA00269 long intergenic non-protein coding RNA 269 ncRNA 235.25-4 chr13 24632733 24633087 + 1.25 NA Intergenic MIR|SINE|MIR -47498 NM_001676 479 Hs.147111 NM_001676 ENSG00000075673 ATP12A ATP1AL1|HK ATPase H+/K+ transporting non-gastric alpha2 subunit protein-coding 178.5-52 chr4 89557447 89557674 + 1.25 NA Intergenic Intergenic -249760 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 191.25-54 chr5 78843899 78844096 + 1.25 NA intron (NM_198709, intron 6 of 7) L1MB8|LINE|L1 141313 NM_000046 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 266.75-8 chr15 81507168 81507399 + 1.25 NA Intergenic Charlie7|DNA|hAT-Charlie -133070 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 312-4 chr8 89641789 89642153 + 1.25 NA Intergenic L1M2|LINE|L1 115740 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 231.75-31 chr7 115797892 115798151 + 1.25 NA Intergenic Intergenic 170292 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 304.5-5 chr4 37445265 37445584 + 1.25 NA exon (NM_001144990, exon 7 of 7) exon (NM_001144990, exon 7 of 7) -8501 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 397.25 chr1 97463021 97463566 + 1.25 NA intron (NM_000110, intron 13 of 22) THE1B|LTR|ERVL-MaLR -333628 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 267 chr11 38458083 38458450 + 1.25 NA Intergenic Intergenic 188090 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 195.5-36 chr21 30092226 30092418 + 1.25 NA Intergenic Intergenic 74483 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 304.5-10 chr8 16644866 16645348 + 1.25 NA Intergenic (ATTTTAT)n|Simple_repeat|Simple_repeat 357238 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 164.25-94 chrX 35232543 35232765 + 1.25 NA Intergenic MIR|SINE|MIR 289858 NM_152631 170062 Hs.197801 NM_152631 ENSG00000189132 FAM47B - family with sequence similarity 47 member B protein-coding 197.75-66 chr7 10730656 10730953 + 1.25 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) 28128 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 290.75 chr13 61589311 61590019 + 1.25 NA Intergenic Intergenic -161719 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 415.5 chr6 110317960 110318389 + 1.25 NA intron (NM_001123364, intron 2 of 4) intron (NM_001123364, intron 2 of 4) 11884 NM_001354595 728464 Hs.634429 NM_001123364 ENSG00000053328 METTL24 C6orf186 methyltransferase like 24 protein-coding 293.5-10 chr6 34655515 34656064 + 1.25 NA intron (NM_022758, intron 1 of 3) L1ME4b|LINE|L1 -40365 NR_134625 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 316-4 chr14 82434665 82435142 + 1.25 NA Intergenic MIRb|SINE|MIR -207729 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 182.75-12 chr11 15028470 15028692 + 1.25 NA Intergenic HAL1b|LINE|L1 -45012 NM_000728 797 Hs.534305 NM_000728 ENSG00000175868 CALCB CALC2|CGRP-II|CGRP2 calcitonin related polypeptide beta protein-coding 187.25-26 chr15 96038188 96038373 + 1.25 NA Intergenic Intergenic 89561 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 194-54 chr8 58109424 58109742 + 1.25 NA intron (NM_147189, intron 4 of 4) intron (NM_147189, intron 4 of 4) 115060 NM_147189 90362 Hs.154652 NM_147189 ENSG00000169122 FAM110B C8orf72 family with sequence similarity 110 member B protein-coding 215-30 chr5 94203404 94203639 + 1.25 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -91822 NM_001163417 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 296.5-17 chr7 87796363 87796631 + 1.25 NA intron (NM_001134406, intron 8 of 9) L1MA2|LINE|L1 79863 NM_018843 55972 Hs.208414 NM_018843 ENSG00000075303 SLC25A40 MCFP solute carrier family 25 member 40 protein-coding 180.5-46 chr3 38153101 38153376 + 1.25 NA Intergenic LTR81A|LTR|Gypsy -12299 NM_005109 9943 Hs.475970 NM_005109 ENSG00000172939 OXSR1 OSR1 oxidative stress responsive kinase 1 protein-coding 187.75-11 chr10 106304762 106305044 + 1.25 NA Intergenic Intergenic 164738 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 238.5-40 chr8 111654362 111654745 + 1.25 NA Intergenic Intergenic 277914 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 258.5-15 chr2 177645332 177645579 + 1.25 NA intron (NM_001077197, intron 20 of 20) AluSz|SINE|Alu -26713 NM_152275 92104 Hs.128384 NM_152275 ENSG00000197557 TTC30A IFT70A|TTC30B tetratricopeptide repeat domain 30A protein-coding 169-20 chr15 44323747 44323987 + 1.25 NA intron (NR_157849, intron 2 of 9) intron (NR_157849, intron 2 of 9) 35148 NR_157849 113201 Hs.512867 NM_138423 ENSG00000166734 CASC4 H63 cancer susceptibility 4 protein-coding 153-37 chr2 99671093 99671252 + 1.25 NA intron (NM_001025108, intron 11 of 23) intron (NM_001025108, intron 11 of 23) -181155 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 332.25-2 chr11 13030152 13030476 + 1.25 NA Intergenic Intergenic 20998 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 356.25-5 chr5 161901227 161901770 + 1.25 NA Intergenic L2a|LINE|L2 50773 NM_001127648 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 354-2 chr4 101940361 101940705 + 1.25 NA intron (NM_017935, intron 7 of 16) L1MC3|LINE|L1 126691 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 216.25-26 chr5 12308764 12308980 + 1.25 NA Intergenic L1MA9|LINE|L1 -265985 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 170-18 chr14 44221023 44221200 + 1.25 NA Intergenic L1PB3|LINE|L1 286172 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 190.25-13 chr14 66282416 66282665 + 1.25 NA Intergenic L1MCc|LINE|L1 -203831 NR_110307 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 178-19 chr14 43689458 43689657 + 1.25 NA Intergenic Intergenic 817726 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 404.5 chrX 143419007 143419653 + 1.25 NA Intergenic Intergenic 98145 NM_001009609 139067 Hs.447320 NM_001009609 ENSG00000189252 SPANXN3 CT11.8|SPANX-N3 SPANX family member N3 protein-coding 408.75 chr11 100937349 100937739 + 1.25 NA intron (NM_001367945, intron 10 of 25) intron (NM_001367945, intron 10 of 25) 3270 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 250.5-29 chr8 128280185 128280579 + 1.25 NA Intergenic L1PB1|LINE|L1 130266 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 171.5-76 chr4 181267269 181267456 + 1.25 NA Intergenic L2a|LINE|L2 -2333 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 149.75-110 chrX 98314483 98314811 + 1 NA Intergenic CR1_Mam|LINE|CR1 -750112 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 218.5-27 chr4 57075587 57075869 + 1 NA intron (NM_001553, intron 1 of 4) intron (NM_001553, intron 1 of 4) -34034 NR_034081 255130 Hs.691061 NR_034081 ENSG00000245067 IGFBP7-AS1 - IGFBP7 antisense RNA 1 ncRNA 200.5-21 chr15 62850365 62850689 + 1 NA Intergenic Intergenic 26570 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 203.75-36 chr5 61763729 61764277 + 1 NA Intergenic L1ME1|LINE|L1 -28305 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 227.75-37 chr9 76178830 76179183 + 1 NA intron (NR_120409, intron 13 of 19) intron (NR_120409, intron 13 of 19) 215420 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 267.75-16 chr7 79589276 79589734 + 1 NA Intergenic Intergenic 135545 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 267.5-11 chr3 116671733 116672139 + 1 NA Intergenic Intergenic -37852 NR_015391 285194 Hs.120364 NR_015391 TUSC7 LINC00902|LSAMP-AS1|LSAMP-AS3|LSAMPAS3|NCRNA00295 tumor suppressor candidate 7 ncRNA 222.5-18 chr14 97818094 97818446 + 1 NA Intergenic (CTT)n|Simple_repeat|Simple_repeat -55439 NR_146447 100132612 Hs.587781 NR_146447 ENSG00000258869 LINC02312 - long intergenic non-protein coding RNA 2312 ncRNA 300.75-7 chr7 13908587 13909116 + 1 NA intron (NR_120445, intron 11 of 14) intron (NR_120445, intron 11 of 14) 77663 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 179.25-61 chr5 42431089 42431382 + 1 NA intron (NM_001242401, intron 1 of 10) intron (NM_001242401, intron 1 of 10) 6254 NM_001242401 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 253.25-10 chr2 19167759 19168179 + 1 NA Intergenic Intergenic -140998 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 345.5 chr1 186141706 186142348 + 1 NA intron (NM_031935, intron 89 of 106) L1PREC2|LINE|L1 -154246 NM_001127710 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 195.25-57 chr8 87643273 87643603 + 1 NA Intergenic L2|LINE|L2 230577 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 350.25-2 chr16 53328062 53328517 + 1 NA TTS (NM_001308319) TTS (NM_001308319) 42923 NM_001347693 643802 Hs.451336 NM_001207030 LOC643802 - u3 small nucleolar ribonucleoprotein protein MPP10-like protein-coding 219.75-39 chr7 33232226 33232793 + 1 NA intron (NM_198428, intron 5 of 22) intron (NM_198428, intron 5 of 22) 102945 NM_001348040 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 203.75-18 chr21 19864066 19864452 + 1 NA Intergenic Intergenic 35496 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 287.5-13 chr2 174461206 174461772 + 1 NA exon (NM_152529, exon 9 of 16) exon (NM_152529, exon 9 of 16) 25540 NM_001267050 151556 Hs.516604 NM_152529 ENSG00000163328 GPR155 DEP.7|DEPDC3|PGR22 G protein-coupled receptor 155 protein-coding 163.75-63 chr6 15163273 15163527 + 1 NA Intergenic MIRc|SINE|MIR -82669 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 268.5-6 chr11 81095035 81095454 + 1 NA Intergenic L1PA4|LINE|L1 -332441 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 334.25-2 chr7 20685325 20685679 + 1 NA intron (NM_178559, intron 6 of 18) intron (NM_178559, intron 6 of 18) 38172 NM_001163993 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 199.75-62 chr9 81616847 81617291 + 1 NA intron (NM_005077, intron 9 of 19) intron (NM_005077, intron 9 of 19) 72466 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 320.5-7 chr21 21030981 21031382 + 1 NA intron (NM_001352595, intron 1 of 14) intron (NM_001352595, intron 1 of 14) 32772 NM_004540 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 176.25-29 chr15 77522036 77522381 + 1 NA Intergenic L1MC4|LINE|L1 -3387 NR_135692 101929457 Hs.637111 NR_135692 ENSG00000259362 LOC101929457 - uncharacterized LOC101929457 ncRNA 280.5-8 chr3 99799998 99800620 + 1 NA Intergenic Intergenic -17553 NM_032359 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 178.5-34 chr19 28410201 28410492 + 1 NA Intergenic MIRc|SINE|MIR -196342 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 276.5 chr1 71754653 71755026 + 1 NA intron (NM_173808, intron 3 of 6) L2a|LINE|L2 82173 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 246.5-7 chr13 64463064 64463540 + 1 NA Intergenic L1MB8|LINE|L1 -387291 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 274.75-17 chr7 129358376 129358907 + 1 NA intron (NM_001130720, intron 1 of 16) L1MB3|LINE|L1 -9739 NM_001130723 23382 Hs.600789 NM_015328 ENSG00000158467 AHCYL2 ADOHCYASE3|IRBIT2 adenosylhomocysteinase like 2 protein-coding 288.75-14 chrX 142876998 142877451 + 1 NA Intergenic L1PA16|LINE|L1 -148704 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 268.5-17 chr3 166546974 166547265 + 1 NA Intergenic Intergenic -351564 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 178.75 chr1 57791163 57791365 + 1 NA intron (NM_001353980, intron 3 of 5) MIRb|SINE|MIR -69317 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 301.5-12 chr5 118218286 118218712 + 1 NA intron (NR_104997, intron 2 of 2) L1MC2|LINE|L1 -64075 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 147.75-33 chr14 48665660 48665883 + 1 NA Intergenic L2c|LINE|L2 -870757 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 160.5-13 chr1 237990322 237990563 + 1 NA Intergenic Intergenic -99520 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 345.25-7 chr9 29782966 29783565 + 1 NA Intergenic Intergenic -569664 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 165.5-32 chr14 62917154 62917464 + 1 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 128149 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 421.5 chr2 184366001 184366638 + 1 NA Intergenic Intergenic -12656 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 190.75-60 chr6 47623779 47624135 + 1 NA intron (NM_012120, intron 17 of 17) intron (NM_012120, intron 17 of 17) -32515 NM_001368115 222611 Hs.724860 NM_153839 ENSG00000164393 ADGRF2 GPR111|PGR20|hGPCR35 adhesion G protein-coupled receptor F2 protein-coding 217.75-36 chr6 44869005 44869383 + 1 NA intron (NM_181356, intron 12 of 12) intron (NM_181356, intron 12 of 12) -317313 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 232.5-40 chr5 36085093 36085392 + 1 NA Intergenic L1PA12|LINE|L1 -18360 NR_031764 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 224.5 chr1 184993376 184993806 + 1 NA Intergenic L1M4c|LINE|L1 -7936 NR_146489 101929069 Hs.497170 NR_146489 ENSG00000260976 LINC01633 GS1-120K12.4 long intergenic non-protein coding RNA 1633 ncRNA 267.5-3 chr10 89886905 89887281 + 1 NA intron (NR_149080, intron 1 of 1) intron (NR_149080, intron 1 of 1) -1041 NR_149079 105378425 Hs.559891 NR_149079 ENSG00000280560 LINC01374 TCONS_00018278 long intergenic non-protein coding RNA 1374 ncRNA 177.75-65 chr6 47730170 47730475 + 1 NA Intergenic Intergenic 31742 NM_001347855 221393 Hs.150131 NM_153838 ENSG00000153294 ADGRF4 GPR115|PGR18 adhesion G protein-coupled receptor F4 protein-coding 292.5-13 chr8 114332348 114332756 + 1 NA Intergenic LTR40a|LTR|ERVL -895613 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 160.5-63 chr3 89575863 89576123 + 1 NA Intergenic Intergenic 468372 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 292.75-2 chr10 102709713 102710347 + 1 NA intron (NM_004311, intron 1 of 5) AluSx1|SINE|Alu 4367 NM_004311 403 Hs.182215 NM_004311 ENSG00000138175 ARL3 ARFL3|JBTS35|RP83 ADP ribosylation factor like GTPase 3 protein-coding 252.25-19 chr9 27760180 27760780 + 1 NA Intergenic Intergenic -186614 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 303.5-18 chr8 111695482 111696090 + 1 NA Intergenic L1MB1|LINE|L1 319147 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 251.25-29 chr8 53564308 53564742 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR -40560 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 275.5-14 chr4 64513602 64513927 + 1 NA Intergenic Intergenic -104304 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 266.25-3 chr18 60377907 60378334 + 1 NA Intergenic Tigger9b|DNA|TcMar-Tigger -5345 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 303.5-13 chr5 45328551 45328995 + 1 NA intron (NM_021072, intron 5 of 7) MER44C|DNA|TcMar-Tigger 367607 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 374.25-2 chr3 101769633 101770207 + 1 NA 3' UTR (NM_001303401, exon 11 of 11) 3' UTR (NM_001303401, exon 11 of 11) -9291 NM_001348992 91775 Hs.595933 NM_145037 ENSG00000144815 NXPE3 FAM55C|MST115|MSTP115 neurexophilin and PC-esterase domain family member 3 protein-coding 288.75-13 chrX 27528446 27528888 + 1 NA Intergenic Intergenic -61677 NM_001353448 347442 Hs.720885 NM_001136533 ENSG00000189186 DCAF8L2 WDR42C DDB1 and CUL4 associated factor 8 like 2 protein-coding 165.25-62 chr7 41592905 41593083 + 1 NA Intergenic Intergenic -100925 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 217.5-35 chr8 112224842 112225156 + 1 NA intron (NM_001363185, intron 66 of 66) intron (NM_001363185, intron 66 of 66) -418494 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 151.5-52 chr2 114775268 114775443 + 1 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 58193 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 277.5-16 chr5 122570793 122571404 + 1 NA Intergenic Intergenic 13502 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 199.75-56 chr8 105467295 105467598 + 1 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 147903 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 248.25-5 chr15 62740529 62741034 + 1 NA intron (NM_015059, intron 29 of 55) intron (NM_015059, intron 29 of 55) -83176 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 268.5-9 chr14 83269002 83269574 + 1 NA Intergenic Intergenic 626656 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 389.75 chr11 12413510 12414306 + 1 NA intron (NM_018222, intron 1 of 12) intron (NM_018222, intron 1 of 12) 36337 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 225.5-40 chr5 77187947 77188197 + 1 NA intron (NM_001349752, intron 1 of 21) intron (NM_001349752, intron 1 of 21) 7768 NM_001349752 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 196.5-29 chr20 34592362 34592592 + 1 NA intron (NM_080476, intron 7 of 11) L1MC4a|LINE|L1 33759 NM_032514 84557 Hs.632273 NM_032514 ENSG00000101460 MAP1LC3A ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3 microtubule associated protein 1 light chain 3 alpha protein-coding 290.75-8 chr6 132041770 132042423 + 1 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 73167 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 227.25-19 chr2 58787167 58787563 + 1 NA intron (NR_033873, intron 2 of 13) MER113|DNA|hAT-Charlie 266612 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 351.75-4 chr14 73380419 73380993 + 1 NA intron (NM_001005743, intron 2 of 12) intron (NM_001005743, intron 2 of 12) 77874 NM_003744 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 182.5-59 chr5 118550746 118551025 + 1 NA intron (NR_104610, intron 1 of 9) MIR|SINE|MIR 11232 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 183.25-36 chr2 147594550 147594892 + 1 NA Intergenic Intergenic -249796 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 145.75-90 chr5 1670068 1670261 + 1 NA Intergenic LTR84a|LTR|ERVL -36159 NR_003713 728613 Hs.720393 NR_003713 LOC728613 - programmed cell death 6 pseudogene pseudo 181.25-22 chr18 80252138 80252367 + 1 NA Intergenic Intergenic -4738 NM_032510 84552 Hs.654920 NM_032510 ENSG00000178184 PARD6G PAR-6G|PAR6gamma par-6 family cell polarity regulator gamma protein-coding 161.75-82 chr6 53625145 53625530 + 1 NA Intergenic Intergenic -3043 NR_125841 101927171 Hs.334005 NR_125841 ENSG00000235899 LINC01564 TCONS_00011314|XLOC_005327 long intergenic non-protein coding RNA 1564 ncRNA 154.25-76 chr7 46640999 46641172 + 1 NA Intergenic L1MDa|LINE|L1 56037 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 161.25-74 chr8 132111802 132112008 + 1 NA Intergenic Intergenic -6640 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 307.75-8 chr8 79964993 79965580 + 1 NA intron (NM_014018, intron 2 of 2) MIR|SINE|MIR 64973 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 270.5-9 chr2 61961380 61961889 + 1 NA intron (NM_152516, intron 1 of 2) HAL1|LINE|L1 55992 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 330.5-8 chr5 127785272 127785636 + 1 NA intron (NM_001317938, intron 3 of 6) intron (NM_001317938, intron 3 of 6) 82065 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 155.25-70 chr5 21682884 21683164 + 1 NA Intergenic L1ME1|LINE|L1 -201430 NR_132787 106635539 NR_132787 SNORA105A - small nucleolar RNA, H/ACA box 105A snoRNA 299.5-7 chr20 58274223 58274677 + 1 NA intron (NR_003505, intron 3 of 16) L1MB8|LINE|L1 34989 NR_003505 55370 Hs.473179 NM_018498 PPP4R1L C20orf192|PPP4R1P1|PRO1085 protein phosphatase 4 regulatory subunit 1 like (pseudogene) pseudo 164.25-22 chr11 91810821 91811035 + 1 NA Intergenic L1MA4|LINE|L1 -414106 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 253.25-16 chr4 36623855 36624263 + 1 NA intron (NR_149124, intron 1 of 4) intron (NR_149124, intron 1 of 4) 17841 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 180.5-3 chr1 184488549 184488841 + 1 NA intron (NM_030806, intron 2 of 5) AluSx3|SINE|Alu 101666 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 150.5-40 chr14 42699436 42699616 + 1 NA Intergenic HAL1ME|LINE|L1 1092670 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 336.25-4 chr2 61410628 61411345 + 1 NA intron (NM_014709, intron 2 of 79) HAL1|LINE|L1 6391 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 180.75-68 chr8 62959952 62960337 + 1 NA intron (NM_001304533, intron 6 of 6) intron (NM_001304533, intron 6 of 6) -17717 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 312.5-5 chr6 126490222 126490701 + 1 NA Intergenic L1M3b|LINE|L1 5830 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 320.25 chr12 130032058 130032582 + 1 NA Intergenic Intergenic 10022 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LINC02418 - long intergenic non-protein coding RNA 2418 ncRNA 206.75-13 chr11 24194172 24194595 + 1 NA Intergenic Intergenic -302670 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 308.5 chr19 41064927 41065379 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR -23298 NM_000766 1553 Hs.567252 NM_000766 ENSG00000197838 CYP2A13 CPAD|CYP2A|CYPIIA13 cytochrome P450 family 2 subfamily A member 13 protein-coding 217.25-14 chr11 40826761 40827065 + 1 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -533783 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 177.75-24 chr17 61002169 61002455 + 1 NA intron (NM_001330413, intron 15 of 25) intron (NM_001330413, intron 15 of 25) 324461 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 230.75-16 chr17 53056588 53056912 + 1 NA Intergenic L1MA4|LINE|L1 71245 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 283.25-10 chr8 137207094 137207591 + 1 NA Intergenic Intergenic 206246 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 497.5-2 chr1 143254172 143254831 + 1 NA Intergenic Intergenic 168091 NR_027354 645166 Hs.744183 NR_027354 LSP1P5 - LSP1 pseudogene 5 pseudo 260.25-21 chr5 24356330 24356735 + 1 NA Intergenic L1MA8|LINE|L1 288446 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 182.25-10 chr12 65436901 65437169 + 1 NA intron (NM_001031679, intron 5 of 6) MIRb|SINE|MIR 120276 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 245.5-5 chr1 164468935 164469422 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -90182 NM_002585 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 471.25 chr8 92658761 92659484 + 1 NA Intergenic Intergenic -3628 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 253.25-6 chr14 83429744 83430251 + 1 NA Intergenic Intergenic 787365 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 251.5-14 chr18 12930392 12930699 + 1 NA Intergenic Intergenic -17439 NM_031216 81929 Hs.301048 NM_031216 ENSG00000085415 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1 like nucleoporin protein-coding 259.75-2 chr1 241499627 241500096 + 1 NA intron (NM_000143, intron 9 of 9) intron (NM_000143, intron 9 of 9) 19924 NM_000143 2271 Hs.592490 NM_000143 ENSG00000091483 FH FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1 fumarate hydratase protein-coding 169.5-82 chr7 4374925 4375104 + 1 NA Intergenic Intergenic -240177 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 324.75-2 chr2 39022948 39023674 + 1 NA intron (NM_005633, intron 9 of 22) intron (NM_005633, intron 9 of 22) -62967 NR_028386 375196 Hs.659035 NR_028386 ENSG00000269210 LOC375196 - uncharacterized LOC375196 ncRNA 273.25-11 chr2 63617604 63617912 + 1 NA Intergenic MER34C2|LTR|ERV1 28607 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 165.75-61 chr3 96010448 96010695 + 1 NA Intergenic Intergenic -327378 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 192.75-53 chr5 77931549 77931760 + 1 NA intron (NR_105012, intron 1 of 1) intron (NR_105012, intron 1 of 1) -26593 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 232.75-35 chr8 135649093 135649585 + 1 NA Intergenic MIRc|SINE|MIR 191883 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 381.5-2 chr10 82592537 82593214 + 1 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -359955 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 279.5-16 chr8 76858876 76859309 + 1 NA intron (NM_024721, intron 10 of 10) intron (NM_024721, intron 10 of 10) 107758 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 171.5-4 chr1 79472636 79473052 + 1 NA Intergenic Intergenic -466114 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 331.5-5 chr4 118244797 118245309 + 1 NA intron (NM_004784, intron 12 of 13) intron (NM_004784, intron 12 of 13) -33709 NR_034010 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 ncRNA 201.5-62 chr8 52294649 52295023 + 1 NA intron (NR_148195, intron 2 of 3) intron (NR_148195, intron 2 of 3) -40344 NM_001352866 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 247.25-25 chr8 133741481 133741900 + 1 NA Intergenic Intergenic 35662 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 154.25-8 chr10 32344185 32344485 + 1 NA TTS (NR_104159) TTS (NR_104159) 2823 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 272.75-5 chr14 40902463 40902802 + 1 NA Intergenic Intergenic -52079 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 246.25-23 chr2 176237545 176237976 + 1 NA Intergenic L1MA7|LINE|L1 -31682 NM_001319098 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 251.5-20 chr4 29514784 29515148 + 1 NA Intergenic Intergenic 300674 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 363.5 chr11 4685934 4686481 + 1 NA intron (NM_030774, intron 1 of 1) intron (NM_030774, intron 1 of 1) 11646 NM_030774 81285 Hs.501758 NM_030774 ENSG00000167332 OR51E2 HPRAJ|OR51E3P|OR52A2|PSGR olfactory receptor family 51 subfamily E member 2 protein-coding 174.25-42 chr3 54012849 54013128 + 1 NA Intergenic AluJr|SINE|Alu -109564 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 234.5-16 chr2 99950045 99950376 + 1 NA intron (NM_001025108, intron 6 of 23) UCON9|Unknown|Unknown 155373 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 151.5-70 chr3 156523010 156523173 + 1 NA intron (NM_172159, intron 11 of 13) intron (NM_172159, intron 11 of 13) 31034 NM_001308205 6747 Hs.518346 NM_007107 ENSG00000114850 SSR3 TRAPG signal sequence receptor subunit 3 protein-coding 148.75-31 chr14 74038833 74039145 + 1 NA intron (NM_025057, intron 4 of 11) intron (NM_025057, intron 4 of 11) 19640 NM_025057 80127 Hs.644621 NM_025057 ENSG00000119636 BBOF1 C14orf45|CCDC176 basal body orientation factor 1 protein-coding 178.75-64 chr7 154511637 154511970 + 1 NA intron (NR_157196, intron 3 of 25) intron (NR_157196, intron 3 of 25) 206644 NM_001290252 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 264.5 chr10 4973778 4974267 + 1 NA intron (NM_001353, intron 7 of 8) intron (NM_001353, intron 7 of 8) 10607 NM_001353 1645 Hs.460260 NM_001353 ENSG00000187134 AKR1C1 2-ALPHA-HSD|20-ALPHA-HSD|C9|DD1|DD1/DD2|DDH|DDH1|H-37|HAKRC|HBAB|MBAB aldo-keto reductase family 1 member C1 protein-coding 266.5-2 chr1 174574019 174574485 + 1 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) -126287 NM_001366451 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 255.25-6 chr14 54334138 54334623 + 1 NA Intergenic Intergenic -62488 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 295.25-2 chr17 59752128 59752521 + 1 NA intron (NM_001329401, intron 4 of 9) MER58A|DNA|hAT-Charlie 44670 NM_001329397 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 202.25-34 chr2 165768312 165768727 + 1 NA intron (NM_004482, intron 2 of 10) intron (NM_004482, intron 2 of 10) 25728 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 171.75-25 chr14 84771058 84771248 + 1 NA Intergenic Intergenic -500779 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 227.5-33 chr8 91673457 91673757 + 1 NA Intergenic Intergenic 344073 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 322.25 chr1 236559290 236559813 + 1 NA intron (NM_018072, intron 34 of 44) intron (NM_018072, intron 34 of 44) -35043 NR_034040 100287902 Hs.677376 NR_034040 ENSG00000223776 LGALS8-AS1 - LGALS8 antisense RNA 1 ncRNA 240.25-2 chr1 238470682 238470989 + 1 NA Intergenic Intergenic 15182 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 252.75-27 chr7 27759085 27759587 + 1 NA intron (NM_001206902, intron 3 of 15) Charlie4a|DNA|hAT-Charlie 19241 NM_001206902 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 225.5-29 chr3 22799027 22799435 + 1 NA Intergenic LTR16A2|LTR|ERVL 403347 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 217.25-28 chr20 35610938 35611281 + 1 NA Intergenic MER1B|DNA|hAT-Charlie -3547 NR_119376 80307 Hs.72222 NR_001442 ENSG00000088340 FER1L4 C20orf124 fer-1 like family member 4 (pseudogene) pseudo 246.5-21 chr5 100775958 100776411 + 1 NA Intergenic MLT1A|LTR|ERVL-MaLR 40381 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 146.5-19 chr12 105033567 105033818 + 1 NA intron (NM_001034173, intron 19 of 22) Tigger12|DNA|TcMar-Tigger 47376 NM_152318 121053 Hs.295563 NM_152318 ENSG00000151131 C12orf45 - chromosome 12 open reading frame 45 protein-coding 579.5 chr11 77255270 77256576 + 1 NA intron (NM_182833, intron 11 of 16) intron (NM_182833, intron 11 of 16) 45743 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 166.75-100 chr9 78241667 78241896 + 1 NA exon (NM_001098802, exon 4 of 16) exon (NM_001098802, exon 4 of 16) 5706 NM_001349839 84131 Hs.187621 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 165.5-75 chr5 179377440 179377739 + 1 NA Intergenic Intergenic -32128 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 207.75-22 chr2 156867248 156867631 + 1 NA Intergenic Intergenic -390266 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 190.25-42 chr6 74234598 74235033 + 1 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 165364 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 301.5-16 chr8 76053640 76054152 + 1 NA Intergenic MLT1E2|LTR|ERVL-MaLR -352758 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 225.5-52 chr8 68655272 68655638 + 1 NA intron (NR_146187, intron 8 of 13) MER47B|DNA|TcMar-Tigger -323964 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 212.5-53 chr8 77693066 77693329 + 1 NA Intergenic L2|LINE|L2 242500 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 223.25-3 chr10 36766782 36767046 + 1 NA Intergenic Intergenic -358943 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 390.25-2 chr7 78311653 78312507 + 1 NA intron (NM_001301128, intron 9 of 20) intron (NM_001301128, intron 9 of 20) -35162 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 293.5-3 chr15 80149915 80150371 + 1 NA Intergenic Intergenic -2856 NM_000137 2184 Hs.73875 NM_000137 ENSG00000103876 FAH - fumarylacetoacetate hydrolase protein-coding 151.25-24 chr14 77378343 77378574 + 1 NA exon (NM_001010860, exon 1 of 3) exon (NM_001010860, exon 1 of 3) 1080 NM_001010860 161394 Hs.421961 NM_001010860 ENSG00000100583 SAMD15 C14orf174|FAM15A sterile alpha motif domain containing 15 protein-coding 159.75-46 chr2 31702882 31703161 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR 100959 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 227.75-7 chr11 43499661 43500122 + 1 NA Intergenic L2c|LINE|L2 -59765 NR_031577 100313777 NR_031577 ENSG00000211568 MIR670 hsa-mir-670 microRNA 670 ncRNA 284.75 chr10 12974621 12975200 + 1 NA intron (NM_001282658, intron 6 of 6) MIRb|SINE|MIR 26803 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 197.25-49 chr8 112657782 112658181 + 1 NA intron (NM_001363185, intron 15 of 66) L2c|LINE|L2 14488 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 252.25 chr10 57289802 57290135 + 1 NA Intergenic Intergenic 14591 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 148.75-52 chr2 155010984 155011362 + 1 NA Intergenic Intergenic 312478 NM_002239 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 281.5-30 chr7 100757955 100758313 + 1 NA intron (NR_111919, intron 15 of 46) intron (NR_111919, intron 15 of 46) 24539 NR_111918 7455 Hs.307004 NM_003386 ENSG00000146839 ZAN - zonadhesin (gene/pseudogene) protein-coding 160.25-7 chr10 9337304 9337485 + 1 NA Intergenic Intergenic -41801 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 147.75-70 chr3 115876906 115877126 + 1 NA intron (NM_001318915, intron 3 of 8) intron (NM_001318915, intron 3 of 8) 28110 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 155.25-65 chr4 55970541 55970975 + 1 NA intron (NM_025009, intron 9 of 25) MIRb|SINE|MIR 21813 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 235.75-2 chr1 191899905 191900339 + 1 NA Intergenic Intergenic -258340 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 214.5-21 chr2 66571528 66571756 + 1 NA 3' UTR (NM_002398, exon 13 of 13) 3' UTR (NM_002398, exon 13 of 13) -2388 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 274.5-4 chr12 2199887 2200616 + 1 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 23230 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 177.75-5 chr1 95035972 95036190 + 1 NA intron (NM_001305242, intron 2 of 4) intron (NM_001305242, intron 2 of 4) -25515 NR_132786 101928098 Hs.730090 NR_132786 ENSG00000230427 LOC101928098 - uncharacterized LOC101928098 ncRNA 156.5-72 chr4 44643235 44643492 + 1 NA intron (NM_182592, intron 2 of 5) MSTA-int|LTR|ERVL-MaLR 8278 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 227.5 chr1 95226419 95226899 + 1 NA intron (NR_125949, intron 1 of 3) intron (NR_125949, intron 1 of 3) 7323 NR_125949 101928118 Hs.656443 NR_125948 ENSG00000226026 LOC101928118 - uncharacterized LOC101928118 ncRNA 207.25-16 chr12 119294076 119294520 + 1 NA intron (NR_024246, intron 2 of 3) intron (NR_024246, intron 2 of 3) 9082 NR_024246 144742 Hs.524782 NR_024246 ENSG00000281196 LINC00934 - long intergenic non-protein coding RNA 934 ncRNA 239.5-20 chr2 210686049 210686420 + 1 NA Intergenic Intergenic 68663 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 162.5-19 chr12 13802475 13802745 + 1 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 177746 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 228.5-11 chr11 20738773 20739082 + 1 NA intron (NM_201551, intron 2 of 18) intron (NM_201551, intron 2 of 18) 69341 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 171.25-61 chr8 117338679 117338873 + 1 NA Intergenic Intergenic -181937 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 218.25-23 chr22 29965068 29965372 + 1 NA intron (NM_153051, intron 2 of 18) intron (NM_153051, intron 2 of 18) -41829 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 295.25-4 chr5 13123213 13123691 + 1 NA Intergenic Intergenic -90566 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 345.25 chr12 43422071 43422692 + 1 NA intron (NM_025003, intron 28 of 38) intron (NM_025003, intron 28 of 38) 129822 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 383.5 chr15 25590381 25590891 + 1 NA Intergenic L1MEg|LINE|L1 -151580 NM_130839 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 171.5-89 chr6 153739947 153740282 + 1 NA Intergenic Intergenic -270382 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 195.5-51 chr4 134508020 134508355 + 1 NA intron (NR_147155, intron 3 of 3) intron (NR_147155, intron 3 of 3) 84319 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 240.5-14 chr2 165433727 165434099 + 1 NA Intergenic Intergenic -35785 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 240.25-22 chr7 34072908 34073222 + 1 NA intron (NM_133468, intron 12 of 15) intron (NM_133468, intron 12 of 15) 167526 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 375.5-5 chr2 166825864 166826337 + 1 NA Intergenic Intergenic -62387 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 181.25-33 chr2 235164586 235164874 + 1 NA Intergenic Intergenic 136995 NM_001371306 159.5-14 chr11 28847337 28847528 + 1 NA Intergenic Intergenic -369884 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 292.75-3 chr11 121434267 121434654 + 1 NA Intergenic AluSz|SINE|Alu -17854 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 148.75-3 chr1 169973124 169973348 + 1 NA intron (NM_014970, intron 16 of 19) L1M8|LINE|L1 -79277 NM_181093 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 171.75-26 chr14 86379974 86380304 + 1 NA Intergenic Intergenic 445461 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 168.5-73 chr4 39255451 39255733 + 1 NA intron (NM_025132, intron 26 of 36) intron (NM_025132, intron 26 of 36) 73063 NM_001317924 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 195.5-75 chr9 35511526 35511803 + 1 NA intron (NM_001330740, intron 1 of 10) L2b|LINE|L2 21553 NR_052015 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 190.5-35 chr3 52644760 52645050 + 1 NA intron (NM_001366074, intron 10 of 30) intron (NM_001366074, intron 10 of 30) 40694 NM_001350074 55193 Hs.189920 NM_018165 ENSG00000163939 PBRM1 BAF180|PB1 polybromo 1 protein-coding 208.5-39 chr3 32593765 32594025 + 1 NA Intergenic L1MA9|LINE|L1 -22971 NM_001329135 51143 Hs.529495 NM_016141 ENSG00000144635 DYNC1LI1 DLC-A|DNCLI1|LIC1 dynein cytoplasmic 1 light intermediate chain 1 protein-coding 193.75-38 chr2 188872550 188872916 + 1 NA Intergenic Tigger13a|DNA|TcMar-Tigger -82610 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 185.25-55 chr3 179834926 179835137 + 1 NA intron (NM_001349408, intron 8 of 14) MLT1C|LTR|ERVL-MaLR -63163 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 205.5-14 chr14 62648301 62648557 + 1 NA Intergenic Intergenic 397029 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 273.25-4 chr10 73439389 73439771 + 1 NA intron (NM_001142354, intron 12 of 12) intron (NM_001142354, intron 12 of 12) -6019 NM_001024593 118490 Hs.631823 NM_001024593 ENSG00000166343 MSS51 ZMYND17 MSS51 mitochondrial translational activator protein-coding 190.75-73 chr8 137796866 137797155 + 1 NA Intergenic Intergenic 286535 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 229.5-24 chr3 66491300 66491694 + 1 NA intron (NM_015541, intron 1 of 18) intron (NM_015541, intron 1 of 18) 8924 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 225.5-48 chr7 50136798 50137223 + 1 NA intron (NM_001161834, intron 5 of 8) L1ME3C|LINE|L1 40924 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 167.75-51 chr2 213610141 213610340 + 1 NA intron (NR_047660, intron 9 of 14) LTR49|LTR|ERV1 -147827 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 225.5-33 chr3 187558225 187558599 + 1 NA Intergenic L1ME4a|LINE|L1 111366 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 163.75-52 chr4 99783730 99784037 + 1 NA Intergenic Intergenic -32944 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 195.75-70 chr9 5045596 5046053 + 1 NA intron (NM_004972, intron 5 of 24) L1MB3|LINE|L1 4131 NM_001322204 3717 Hs.656213 NM_004972 ENSG00000096968 JAK2 JTK10|THCYT3 Janus kinase 2 protein-coding 327.25-7 chr8 136549190 136549582 + 1 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 18588 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 156.5-55 chr2 181340173 181340379 + 1 NA intron (NR_130784, intron 3 of 4) L1ME1|LINE|L1 -34624 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 155.5-26 chr12 115513057 115513280 + 1 NA Intergenic MLT1J2|LTR|ERVL-MaLR 635486 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 271.5-2 chr1 187421394 187421888 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -21987 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 368.5 chr18 78170477 78170994 + 1 NA Intergenic Intergenic -177008 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 442.75 chr2 210388426 210389151 + 1 NA intron (NR_110606, intron 1 of 4) LTR82B|LTR|ERVL 64076 NR_110604 102724820 Hs.659232 NR_110604 LANCL1-AS1 LANCLOT LANCL1 antisense RNA 1 ncRNA 372.25-3 chr3 82083741 82084139 + 1 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 97798 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 202.5-60 chr8 85860870 85861485 + 1 NA Intergenic Intergenic -33235 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 178.5-28 chr15 34839818 34840211 + 1 NA Intergenic Intergenic -44465 NM_005159 70 Hs.118127 NM_005159 ENSG00000159251 ACTC1 ACTC|ASD5|CMD1R|CMH11|LVNC4 actin alpha cardiac muscle 1 protein-coding 289.5-17 chr8 68549313 68549756 + 1 NA intron (NR_146186, intron 7 of 12) L1ME2|LINE|L1 -218043 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 170.75-58 chr5 175419279 175419546 + 1 NA Intergenic Intergenic 24770 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 242.75-12 chr17 63210217 63210665 + 1 NA intron (NM_025185, intron 6 of 25) intron (NM_025185, intron 6 of 25) 229826 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 155.75-74 chr4 31901642 31901831 + 1 NA Intergenic Intergenic -95643 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 444.75 chr2 55953064 55953611 + 1 NA Intergenic Intergenic -29555 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 239.5-22 chr20 36646775 36647330 + 1 NA promoter-TSS (NM_032214) promoter-TSS (NM_032214) -856 NM_175077 84174 Hs.713578 NM_032214 ENSG00000101082 SLA2 C20orf156|MARS|SLAP-2|SLAP2 Src like adaptor 2 protein-coding 208.5-19 chr14 44034925 44035302 + 1 NA Intergenic Intergenic 472170 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 159.75-82 chr5 85094171 85094456 + 1 NA Intergenic MIR|SINE|MIR -709433 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 233.5-27 chr6 53214108 53214551 + 1 NA Intergenic MER110A|LTR|ERV1 -62664 NR_049866 100847075 NR_049866 ENSG00000264056 MIR5685 - microRNA 5685 ncRNA 261.5-15 chr3 28302282 28302710 + 1 NA intron (NM_001331186, intron 3 of 4) intron (NM_001331186, intron 3 of 4) -46225 NR_136708 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 305.5-4 chr2 43089362 43090127 + 1 NA Intergenic MLT1G1|LTR|ERVL-MaLR 12701 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 261.25-14 chr7 52373330 52373756 + 1 NA Intergenic Intergenic -662090 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 256.5-22 chrX 4233141 4233447 + 1 NA Intergenic Intergenic -312552 NR_146579 729162 Hs.657302 NR_146578 FAM239B - zinc finger protein 839 pseudogene pseudo 214.25-31 chr6 165150837 165151214 + 1 NA Intergenic L1M4a2|LINE|L1 158580 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 162.5-45 chr2 183373789 183374116 + 1 NA Intergenic L1MA2|LINE|L1 249509 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 152.75-65 chr4 48621923 48622122 + 1 NA intron (NM_015030, intron 5 of 63) intron (NM_015030, intron 5 of 63) 131770 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 253.25-7 chr15 97532988 97533406 + 1 NA Intergenic L2b|LINE|L2 -11386 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 368.5-2 chr2 115485893 115486479 + 1 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 142371 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 146.5-100 chr7 121131682 121132027 + 1 NA intron (NM_001105533, intron 11 of 17) intron (NM_001105533, intron 11 of 17) 142463 NM_001105533 79974 Hs.189652 NM_024913 ENSG00000106034 CPED1 C7orf58 cadherin like and PC-esterase domain containing 1 protein-coding 192.25-60 chr8 86736664 86736961 + 1 NA intron (NM_019098, intron 2 of 17) intron (NM_019098, intron 2 of 17) 6863 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 298.5-7 chr2 17100586 17101003 + 1 NA Intergenic L2a|LINE|L2 417646 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 289.5-19 chr9 30569222 30569766 + 1 NA Intergenic LTR37B|LTR|ERV1 -161040 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 197.5-48 chr4 102878825 102879086 + 1 NA intron (NM_001008388, intron 1 of 2) THE1D|LTR|ERVL-MaLR 9963 NM_001008388 493856 Hs.444955 NM_001008388 ENSG00000145354 CISD2 ERIS|Miner1|NAF-1|WFS2|ZCD2 CDGSH iron sulfur domain 2 protein-coding 192.5-54 chr6 133266644 133266962 + 1 NA intron (NM_172103, intron 1 of 18) intron (NM_172103, intron 1 of 18) 25304 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 399.5-2 chr7 15325687 15326427 + 1 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) 235958 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 267.75-6 chr17 52689413 52690078 + 1 NA Intergenic Intergenic -172376 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 226.25-31 chr8 119671342 119671869 + 1 NA intron (NM_001330600, intron 1 of 25) L2c|LINE|L2 1785 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 196.5-28 chr2 214691854 214692195 + 1 NA Intergenic L1M4|LINE|L1 117659 NM_000465 580 Hs.591642 NM_000465 ENSG00000138376 BARD1 - BRCA1 associated RING domain 1 protein-coding 148.25-97 chr8 136598424 136598723 + 1 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 67775 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 272.75-7 chr2 30338513 30338962 + 1 NA Intergenic L2a|LINE|L2 -7909 NR_122048 285043 Hs.429119 NR_122048 LINC01936 - long intergenic non-protein coding RNA 1936 ncRNA 224.25-13 chr15 43038045 43038453 + 1 NA intron (NM_174916, intron 15 of 46) intron (NM_174916, intron 15 of 46) 67789 NM_174916 197131 Hs.591121 NM_174916 ENSG00000159459 UBR1 JBS ubiquitin protein ligase E3 component n-recognin 1 protein-coding 328.75-2 chr4 46828889 46829688 + 1 NA intron (NM_130902, intron 2 of 2) intron (NM_130902, intron 2 of 2) 79957 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 222.25-16 chr16 35439266 35439650 + 1 NA Intergenic MER34B-int|LTR|ERV1 41138 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 277.5-7 chr14 83828419 83828810 + 1 NA Intergenic Intergenic 1185982 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 185.5-70 chr8 83725173 83725500 + 1 NA Intergenic MER57-int|LTR|ERV1 321578 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 231.5-26 chr5 51962874 51963415 + 1 NA Intergenic L4_C_Mam|LINE|RTE-X -44887 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 245.25-26 chr8 88445009 88445343 + 1 NA Intergenic Intergenic -117693 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 202.75-11 chr11 63426481 63426836 + 1 NA Intergenic Intergenic 56873 NM_080866 114571 Hs.502772 NM_080866 ENSG00000149742 SLC22A9 HOAT4|OAT4|OAT7|UST3H|ust3 solute carrier family 22 member 9 protein-coding 397.5 chr10 29897075 29897716 + 1 NA Intergenic Intergenic -160459 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 222.25-8 chr12 10235883 10236385 + 1 NA Intergenic Intergenic -2827 NM_001351060 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 193.75-48 chr4 99939830 99940165 + 1 NA intron (NM_001031723, intron 1 of 7) intron (NM_001031723, intron 1 of 7) 6621 NM_001278310 79982 Hs.577426 NM_024920 ENSG00000164031 DNAJB14 EGNR9427|PRO34683 DnaJ heat shock protein family (Hsp40) member B14 protein-coding 379.5-5 chr8 132719659 132720272 + 1 NA intron (NM_144649, intron 7 of 9) L1MC3|LINE|L1 40617 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 196.75-41 chr5 111605621 111606029 + 1 NA intron (NR_040093, intron 1 of 6) L1MB8|LINE|L1 -93228 NM_001308058 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 257.5-6 chr13 96752103 96752911 + 1 NA intron (NM_153456, intron 1 of 1) L1ME3F|LINE|L1 231665 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 157.5-56 chr21 30279282 30279526 + 1 NA Intergenic L1MC2|LINE|L1 3546 NM_001085455 643803 Hs.580883 NM_001085455 ENSG00000188694 KRTAP24-1 KAP24.1 keratin associated protein 24-1 protein-coding 226.25-20 chr4 146873304 146873554 + 1 NA intron (NR_133922, intron 7 of 13) intron (NR_133922, intron 7 of 13) 72435 NR_133922 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 176.75-85 chr7 79971472 79971691 + 1 NA Intergenic MLT1J2|LTR|ERVL-MaLR -163250 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 205.5-31 chr3 50739663 50739931 + 1 NA intron (NM_004947, intron 1 of 52) MIRb|SINE|MIR 64717 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 287.75-7 chr19 40026096 40026447 + 1 NA Intergenic L1M4b|LINE|L1 29211 NM_178544 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 241.25-24 chr8 39053099 39053527 + 1 NA intron (NR_027638, intron 12 of 20) L1MD|LINE|L1 -34628 NR_145988 109616979 NR_145736 ENSG00000207199 SNORD38D - small nucleolar RNA, C/D box 38D snoRNA 178.25-20 chr15 68115262 68115500 + 1 NA intron (NM_016166, intron 2 of 13) L1MEc|LINE|L1 60805 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 291.75-3 chr14 76870802 76871126 + 1 NA TTS (NM_194287) TTS (NM_194287) 44556 NM_194287 145497 Hs.147276 NM_194287 ENSG00000100565 LRRC74A C14orf166B|LRRC74 leucine rich repeat containing 74A protein-coding 227.25-7 chr11 63119367 63119780 + 1 NA intron (NM_173586, intron 2 of 3) intron (NM_173586, intron 2 of 3) 24648 NM_001136506 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 225.75-24 chr5 21126072 21126398 + 1 NA Intergenic Intergenic -333245 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 260.5-19 chr8 127844863 127845167 + 1 NA intron (NR_003367, intron 1 of 8) L2c|LINE|L2 49053 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 265.5-5 chr11 15175033 15175637 + 1 NA intron (NM_001042536, intron 2 of 12) intron (NM_001042536, intron 2 of 12) 26233 NM_001278314 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 255.5-39 chr7 121765732 121766223 + 1 NA Intergenic Intergenic -107184 NM_001369396 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 230.75-7 chr12 15531080 15531509 + 1 NA intron (NM_030667, intron 12 of 26) L1M3f|LINE|L1 -15317 NM_030669 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 230.75 chr1 77563187 77563694 + 1 NA 3' UTR (NM_001308237, exon 14 of 14) 3' UTR (NM_001308237, exon 14 of 14) 119218 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 165.5-58 chr3 36881727 36881995 + 1 NA intron (NM_001329998, intron 8 of 23) L1MB7|LINE|L1 -59361 NR_147141 105377031 Hs.333862 NR_147141 ENSG00000279727 LINC02033 - long intergenic non-protein coding RNA 2033 ncRNA 254.75-16 chr3 51871739 51872215 + 1 NA Intergenic L1MB3|LINE|L1 -1619 NR_109984 101928999 NR_109984 ENSG00000235455 IQCF5-AS1 - IQCF5 antisense RNA 1 ncRNA 176.75-22 chr14 47409990 47410216 + 1 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -66857 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 191.5-35 chr22 31227189 31227407 + 1 NA intron (NM_005569, intron 2 of 15) intron (NM_005569, intron 2 of 15) 15000 NM_005569 3985 Hs.474596 NM_005569 ENSG00000182541 LIMK2 - LIM domain kinase 2 protein-coding 264.75-18 chr7 19932467 19932857 + 1 NA intron (NR_110114, intron 5 of 5) intron (NR_110114, intron 5 of 5) -159045 NM_001366626 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 207.75-30 chr3 186754938 186755372 + 1 NA Intergenic MER4A1_|LTR|ERV1 -28422 NM_001967 1974 Hs.518475 NM_001967 ENSG00000156976 EIF4A2 BM-010|DDX2B|EIF4A|EIF4F|eIF-4A-II|eIF4A-II eukaryotic translation initiation factor 4A2 protein-coding 270.5-2 chr10 89053278 89053718 + 1 NA Intergenic Intergenic -9838 NR_039826 100616128 NR_039826 ENSG00000283664 MIR4679-1 - microRNA 4679-1 ncRNA 237.75-14 chr2 124736068 124736514 + 1 NA intron (NM_130773, intron 13 of 23) intron (NM_130773, intron 13 of 23) 711004 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 287.25-8 chr4 86231620 86232257 + 1 NA intron (NM_001363657, intron 2 of 13) intron (NM_001363657, intron 2 of 13) 112132 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 155.5-70 chr3 192028839 192029095 + 1 NA Intergenic L1MCa|LINE|L1 -209663 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 354.5-4 chr3 67938439 67939055 + 1 NA intron (NR_109992, intron 6 of 6) MIR|SINE|MIR -52845 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 207.5-38 chr6 121917601 121918001 + 1 NA Intergenic Intergenic -481750 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 199.5-53 chr9 100172281 100172518 + 1 NA intron (NR_134606, intron 3 of 16) intron (NR_134606, intron 3 of 16) 73156 NM_014425 27130 Hs.558477 NM_014425 ENSG00000119509 INVS INV|NPH2|NPHP2 inversin protein-coding 224.5-31 chr7 104436708 104437213 + 1 NA intron (NM_199000, intron 1 of 2) Charlie7|DNA|hAT-Charlie 108304 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 249.75-19 chr6 123237702 123238139 + 1 NA intron (NM_006073, intron 38 of 40) L1MEd|LINE|L1 -201684 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 189.5-2 chr1 183698499 183698819 + 1 NA intron (NM_001297669, intron 2 of 18) intron (NM_001297669, intron 2 of 18) -45343 NM_203454 403314 Hs.97335 NM_203454 ENSG00000173627 APOBEC4 C1orf169 apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 protein-coding 175.75-26 chr17 71331293 71331729 + 1 NA Intergenic Intergenic -129332 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 244.5-30 chr8 121933953 121934437 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -292755 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 276.5-7 chr15 87199253 87199574 + 1 NA Intergenic MER5A|DNA|hAT-Charlie -210987 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 179.75-58 chr6 168676764 168677152 + 1 NA Intergenic Intergenic 235774 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 205.75-56 chr9 75672127 75672512 + 1 NA Intergenic Intergenic -218325 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 257.75-17 chr3 159373965 159374405 + 1 NA intron (NM_001197108, intron 1 of 6) Zaphod|DNA|hAT-Tip100 91539 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 162.5-3 chr1 50330342 50330524 + 1 NA Intergenic Tigger13a|DNA|TcMar-Tigger 93010 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 163.5-29 chr14 63437175 63437393 + 1 NA intron (NR_104104, intron 2 of 12) MER41B|LTR|ERV1 70954 NM_001282181 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 148.5-61 chr3 30750065 30750258 + 1 NA intron (NM_207359, intron 14 of 14) Chap1_Mam|DNA|hAT-Charlie 143560 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 183.25-45 chr3 188854545 188854819 + 1 NA intron (NM_001167672, intron 7 of 9) intron (NM_001167672, intron 7 of 9) 92957 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 162.5-31 chr15 69213143 69213350 + 1 NA intron (NM_001324092, intron 2 of 3) L1MD3|LINE|L1 52611 NM_001324092 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 171.5-58 chr3 5174525 5174785 + 1 NA intron (NM_018184, intron 6 of 6) (AT)n|Simple_repeat|Simple_repeat -13052 NM_014674 9695 Hs.224616 NM_014674 ENSG00000134109 EDEM1 EDEM ER degradation enhancing alpha-mannosidase like protein 1 protein-coding 233.75 chr1 19400662 19400944 + 1 NA intron (NM_001206540, intron 2 of 9) L3b|LINE|CR1 83492 NM_001282162 832 Hs.432760 NM_004930 ENSG00000077549 CAPZB CAPB|CAPPB|CAPZ capping actin protein of muscle Z-line subunit beta protein-coding 180.75-31 chr2 61061254 61061618 + 1 NA Intergenic L1MA8|LINE|L1 -4434 NM_001330434 84542 Hs.468653 NM_032506 ENSG00000162929 KIAA1841 - KIAA1841 protein-coding 266.25-9 chr3 89152175 89152611 + 1 NA intron (NM_182644, intron 2 of 6) intron (NM_182644, intron 2 of 6) 44772 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 356.5-5 chr4 124456000 124456382 + 1 NA Intergenic Intergenic 102243 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 225.25-28 chr4 66676144 66676617 + 1 NA Intergenic L1M5|LINE|L1 399556 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 180.75-75 chr8 140699675 140700026 + 1 NA intron (NR_148037, intron 28 of 34) intron (NR_148037, intron 28 of 34) 18719 NM_001352751 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 315.25-6 chr2 25729405 25730056 + 1 NA Intergenic L1ME1|LINE|L1 -56056 NM_001256304 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 213.75-10 chr17 7146085 7146411 + 1 NA Intergenic Intergenic -31437 NM_080913 433 Hs.654440 NM_001181 ENSG00000161944 ASGR2 ASGP-R2|ASGPR2|CLEC4H2|HBXBP|HL-2 asialoglycoprotein receptor 2 protein-coding 165.5-103 chr9 105604455 105604664 + 1 NA intron (NM_001351502, intron 9 of 13) intron (NM_001351502, intron 9 of 13) 46428 NM_001351499 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 238.75-4 chr1 94802648 94803221 + 1 NA intron (NR_160783, intron 1 of 3) intron (NR_160783, intron 1 of 3) 17298 NR_160779 101928079 Hs.596857 NR_104131 ENSG00000224081 SLC44A3-AS1 LINC01057|XLOC_000303 SLC44A3 antisense RNA 1 ncRNA 206.5-35 chr5 21148222 21148578 + 1 NA Intergenic L1MA1|LINE|L1 -311080 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 156.75-96 chr7 119276313 119276530 + 1 NA Intergenic Intergenic 630954 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 214.5-15 chr16 61133702 61133973 + 1 NA Intergenic L1ME1|LINE|L1 -78071 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 208.5-52 chr5 123448428 123448683 + 1 NA Intergenic Intergenic -24963 NM_153223 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 185.25-40 chr2 36556743 36557152 + 1 NA intron (NM_005102, intron 6 of 7) intron (NM_005102, intron 6 of 7) 41221 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 213.75-22 chr4 72209714 72210194 + 1 NA Intergenic Intergenic 170822 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 260.5-12 chr5 97402430 97402902 + 1 NA Intergenic Intergenic -102030 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 152.25-80 chr5 78952957 78953253 + 1 NA intron (NM_198709, intron 5 of 7) Kanga2_a|DNA|TcMar-Tc2 32205 NM_000046 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 236.25-24 chr5 26635141 26635454 + 1 NA Intergenic L1MEd|LINE|L1 403289 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 325.5-8 chr5 109966034 109966756 + 1 NA Intergenic Intergenic 83213 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 188.75-63 chr8 82040831 82041249 + 1 NA Intergenic (TC)n|Simple_repeat|Simple_repeat -198754 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 326.5 chr1 75146593 75147179 + 1 NA intron (NM_001001933, intron 7 of 9) intron (NM_001001933, intron 7 of 9) 12498 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 182.5-84 chr9 102732634 102732997 + 1 NA Intergenic Intergenic 213178 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 194.5-28 chr17 58910073 58910362 + 1 NA intron (NM_014906, intron 1 of 6) L1MCa|LINE|L1 154348 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 154.5-20 chr11 94977531 94977771 + 1 NA intron (NM_018039, intron 2 of 2) L2a|LINE|L2 3942 NM_018039 55693 Hs.503598 NM_018039 ENSG00000186280 KDM4D JMJD2D lysine demethylase 4D protein-coding 149.5-90 chr7 137580580 137580831 + 1 NA intron (NM_001321710, intron 15 of 32) intron (NM_001321710, intron 15 of 32) -236972 NM_001321387 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 209.5-53 chrX 88833520 88833796 + 1 NA Intergenic L1PB1|LINE|L1 86433 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 213.25-46 chr7 113011314 113011676 + 1 NA Intergenic L1MA8|LINE|L1 -15852 NR_110162 101928036 Hs.120006 NR_110162 ENSG00000234520 HRAT17 - heart tissue-associated transcript 17 ncRNA 153.25-33 chr13 77786408 77786573 + 1 NA Intergenic Intergenic -32447 NR_103853 100505518 Hs.742215 NR_103853 EDNRB-AS1 - EDNRB antisense RNA 1 ncRNA 230.75-47 chr8 143168570 143168823 + 1 NA Intergenic Intergenic -8042 NM_001130478 4062 Hs.159590 NM_002347 ENSG00000176956 LY6H NMLY6 lymphocyte antigen 6 family member H protein-coding 150.5-70 chr20 51852356 51852729 + 1 NA intron (NR_110016, intron 1 of 2) intron (NR_110016, intron 1 of 2) 10371 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 258.5-13 chr2 57404627 57404915 + 1 NA Intergenic Intergenic -502880 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 403.5-3 chr5 164731869 164732496 + 1 NA Intergenic L2a|LINE|L2 261903 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 280.25-5 chr15 40481961 40482691 + 1 NA Intergenic L1MB2|LINE|L1 11365 NM_130468 113189 Hs.442449 NM_130468 ENSG00000169105 CHST14 ATCS|D4ST1|EDSMC1|HNK1ST carbohydrate sulfotransferase 14 protein-coding 293.25-9 chr5 137798661 137799096 + 1 NA Intergenic L1ME4a|LINE|L1 -2315 NR_002713 4888 Hs.643466 NR_002713 ENSG00000226306 NPY6R NPY1RL|NPY6RP|PP2|Y2B neuropeptide Y receptor Y6 (pseudogene) pseudo 213.5-33 chr4 89515701 89516005 + 1 NA Intergenic Intergenic -208053 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 176.25-68 chr8 115291675 115292002 + 1 NA Intergenic Intergenic 376175 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 297.5-8 chr2 140450180 140450520 + 1 NA intron (NM_018557, intron 63 of 90) intron (NM_018557, intron 63 of 90) 136335 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 257.25 chr1 72163675 72164184 + 1 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) 118610 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 260.25-25 chr6 65433115 65433617 + 1 NA intron (NM_198283, intron 4 of 9) intron (NM_198283, intron 4 of 9) 131948 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 212.25-43 chr7 68859975 68860345 + 1 NA Intergenic AluJb|SINE|Alu 737464 NR_148926 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 167.25-25 chr15 77289231 77289529 + 1 NA intron (NM_024776, intron 1 of 7) intron (NM_024776, intron 1 of 7) -63976 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 247.75-11 chr14 73816215 73816692 + 1 NA Intergenic Intergenic 13682 NR_135238 100506498 Hs.569330 NR_135238 ENSG00000258586 LINC02274 - long intergenic non-protein coding RNA 2274 ncRNA 281.5-24 chr5 91510005 91510516 + 1 NA Intergenic Intergenic -126943 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 331.75-4 chr8 142558053 142558485 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger 56210 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1|hArc activity regulated cytoskeleton associated protein protein-coding 158.25-63 chr3 40028763 40028999 + 1 NA intron (NM_001284424, intron 2 of 15) intron (NM_001284424, intron 2 of 15) -71130 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 186.5-34 chr20 47992812 47993151 + 1 NA Intergenic MER61E|LTR|ERV1 -2864 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 173.5-72 chr6 73703421 73703701 + 1 NA intron (NM_001159588, intron 2 of 31) MIR3|SINE|MIR 7358 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 267.5-27 chr8 132786738 132787139 + 1 NA intron (NM_198513, intron 2 of 7) intron (NM_198513, intron 2 of 7) 11550 NM_001277196 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 148.5-63 chr3 89951315 89951610 + 1 NA Intergenic Intergenic 843841 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 300.5-10 chr16 8442181 8442621 + 1 NA Intergenic L1PA13|LINE|L1 147437 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 344.25 chr1 227251856 227252458 + 1 NA intron (NM_001366019, intron 2 of 36) L1MEg|LINE|L1 66335 NM_001366010 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 190.75-4 chr1 152199006 152199264 + 1 NA Intergenic MER91A|DNA|hAT-Tip100 25061 NM_001009931 388697 Hs.490162 NM_001009931 ENSG00000197915 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 170.5-52 chr3 107995724 107996045 + 1 NA Intergenic Intergenic 95204 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 307.5-7 chr4 183559361 183559718 + 1 NA Intergenic Intergenic 53457 NM_001291959 3622 Hs.107153 NM_001564 ENSG00000168556 ING2 ING1L|p33ING2 inhibitor of growth family member 2 protein-coding 242.5-16 chr2 202295168 202295558 + 1 NA intron (NM_015934, intron 9 of 14) intron (NM_015934, intron 9 of 14) 2312 NR_003031 692058 NR_003031 ENSG00000238317 SNORD11 HBII-95 small nucleolar RNA, C/D box 11 snoRNA 253.5-3 chr10 61598102 61598635 + 1 NA Intergenic Intergenic -64561 NM_001366909 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 214.5-31 chr3 136798143 136798383 + 1 NA Intergenic Charlie2a|DNA|hAT-Charlie -20756 NM_001097600 80723 Hs.477692 NM_025246 ENSG00000168917 SLC35G2 TMEM22 solute carrier family 35 member G2 protein-coding 195.75-24 chr15 48285175 48285431 + 1 NA intron (NM_001184832, intron 21 of 26) intron (NM_001184832, intron 21 of 26) -45792 NM_001330286 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 205.5-43 chr7 53775208 53775557 + 1 NA intron (NR_038371, intron 2 of 5) intron (NR_038371, intron 2 of 5) 36549 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 190.5-56 chr6 27240021 27240331 + 1 NA Intergenic Charlie2b|DNA|hAT-Charlie -7525 NM_005865 10279 Hs.274407 NM_005865 ENSG00000112812 PRSS16 TSSP serine protease 16 protein-coding 150.5-31 chr12 14965270 14965511 + 1 NA Intergenic L2a|LINE|L2 -3789 NM_001321420 397 Hs.504877 NM_001175 ENSG00000111348 ARHGDIB D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2 Rho GDP dissociation inhibitor beta protein-coding 153.5-75 chr4 141756605 141756834 + 1 NA Intergenic L2b|LINE|L2 120136 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 301.5-5 chr18 1793541 1794040 + 1 NA Intergenic Intergenic -434161 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 160.5-6 chr1 71034902 71035255 + 1 NA intron (NM_198719, intron 1 of 3) L3|LINE|CR1 -11428 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 216.5-23 chr22 25541785 25542200 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -22683 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 276.75-19 chr9 35379283 35380020 + 1 NA intron (NM_006377, intron 16 of 38) intron (NM_006377, intron 16 of 38) -27104 NR_110320 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 426.5 chr8 106392425 106393333 + 1 NA intron (NM_018002, intron 2 of 15) intron (NM_018002, intron 2 of 15) -55045 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 253.25-21 chr8 128332143 128332570 + 1 NA Intergenic Intergenic 182240 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 319.5-13 chr8 122046262 122046741 + 1 NA Intergenic Intergenic -405061 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 188.5-45 chr4 12166110 12166497 + 1 NA Intergenic Tigger2a|DNA|TcMar-Tigger -57148 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 167.5-73 chr5 27789171 27789367 + 1 NA Intergenic Intergenic 316977 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 338.5-4 chr14 60906083 60906542 + 1 NA intron (NM_001177963, intron 6 of 6) L2a|LINE|L2 74767 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 182.75-16 chr12 61143080 61143318 + 1 NA Intergenic Intergenic 1049640 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 231.5-33 chr7 68540467 68540840 + 1 NA Intergenic Intergenic 520400 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 362.5-5 chr6 113421660 113422186 + 1 NA Intergenic GA-rich|Low_complexity|Low_complexity 11524 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 215.75-35 chr6 170240747 170241058 + 1 NA Intergenic L1ME4a|LINE|L1 21667 NR_002787 154449 Hs.447751 NR_002787 ENSG00000230960 LOC154449 - uncharacterized LOC154449 ncRNA 212.5-37 chr4 66217209 66217644 + 1 NA Intergenic Intergenic -59398 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 297.25-6 chr4 72230207 72230737 + 1 NA Intergenic L2a|LINE|L2 191340 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 176.25-36 chr2 52845036 52845299 + 1 NA Intergenic L1ME1|LINE|L1 -142552 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 314.5-7 chr2 181143659 181144171 + 1 NA intron (NR_130784, intron 1 of 4) intron (NR_130784, intron 1 of 4) 20078 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 333.5-7 chr8 121366011 121366624 + 1 NA Intergenic L1MA1|LINE|L1 -273029 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 296.75 chr1 181464461 181464933 + 1 NA Intergenic L1ME3Cz|LINE|L1 -18820 NM_000721 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 520.75-3 chr9 92473843 92474773 + 1 NA intron (NM_017680, intron 3 of 8) intron (NM_017680, intron 3 of 8) 8198 NM_017680 54829 Hs.435655 NM_017680 ENSG00000106819 ASPN OS3|PLAP-1|PLAP1|SLRR1C asporin protein-coding 186.5-26 chr2 78739915 78740197 + 1 NA Intergenic Intergenic 194525 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 203.5-13 chr12 41848597 41848941 + 1 NA Intergenic Intergenic 84580 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 354.25 chr21 29895273 29895925 + 1 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 44397 NM_001330994 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 359.5-5 chr5 52524543 52525276 + 1 NA Intergenic Intergenic -263007 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 161.75-61 chr4 58424495 58424872 + 1 NA Intergenic L1ME2|LINE|L1 111645 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 176.5-15 chr12 90501246 90501635 + 1 NA Intergenic Intergenic 208122 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 169.5-101 chrX 126209678 126209968 + 1 NA Intergenic MIR|SINE|MIR -43534 NM_001013628 340578 Hs.181867 NM_001013628 ENSG00000198354 DCAF12L2 WDR40C DDB1 and CUL4 associated factor 12 like 2 protein-coding 224.25-28 chr4 145891011 145891354 + 1 NA intron (NM_178835, intron 3 of 14) intron (NM_178835, intron 3 of 14) 47641 NM_178835 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 213.5-40 chr6 143144033 143144395 + 1 NA intron (NM_001366353, intron 2 of 4) intron (NM_001366353, intron 2 of 4) 18075 NM_001366358 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 177.25-54 chr5 24007662 24007993 + 1 NA intron (NR_131245, intron 4 of 4) L1PA15|LINE|L1 56479 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 299.5-12 chr7 50642326 50642892 + 1 NA intron (NM_001350816, intron 6 of 17) Tigger4a|DNA|TcMar-Tigger 62692 NM_001001550 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 202.75-5 chr1 147315263 147315503 + 1 NA Intergenic L1MEc|LINE|L1 72241 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 263.5-2 chr1 94004183 94004559 + 1 NA intron (NM_000350, intron 44 of 49) L1MC4a|LINE|L1 -94773 NM_001308253 2730 Hs.315562 NM_002061 ENSG00000023909 GCLM GLCLR glutamate-cysteine ligase modifier subunit protein-coding 175.5-8 chr10 67546489 67546820 + 1 NA intron (NM_001127384, intron 3 of 17) intron (NM_001127384, intron 3 of 17) 119006 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 341.25-5 chr6 123599470 123600028 + 1 NA intron (NM_001256020, intron 1 of 8) intron (NM_001256020, intron 1 of 8) 37201 NM_006073 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 193.75-14 chr11 106640942 106641426 + 1 NA Intergenic MER57A-int|LTR|ERV1 377292 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 303.25-11 chr5 94197007 94197315 + 1 NA intron (NM_001145678, intron 20 of 20) L1PA15|LINE|L1 -85462 NM_001163417 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 249.5-10 chr17 71053288 71053600 + 1 NA Intergenic Intergenic 148735 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 278.75-4 chr2 128088196 128088754 + 1 NA Intergenic L1MD2|LINE|L1 -2725 NM_020120 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 334.5-4 chr4 64436617 64437148 + 1 NA Intergenic Intergenic -27422 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 249.5-2 chr1 190301973 190302382 + 1 NA intron (NM_199051, intron 2 of 7) L1MC1|LINE|L1 173833 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 221.25-24 chr3 172817068 172817295 + 1 NA intron (NM_001258316, intron 24 of 24) intron (NM_001258316, intron 24 of 24) 66179 NM_001349099 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 185.75-45 chr20 57164473 57164826 + 1 NA Intergenic MIR|SINE|MIR -49047 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 253.25-18 chr6 36694267 36694616 + 1 NA Intergenic L1MC4|LINE|L1 -3385 NM_001257357 401258 Hs.485258 NM_207498 ENSG00000255587 RAB44 RASD3|RASL13|dJ431A14.3 RAB44, member RAS oncogene family protein-coding 217.25-44 chr8 139220798 139221253 + 1 NA Intergenic L1MC3|LINE|L1 -306984 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 340.25 chr12 82515937 82516677 + 1 NA Intergenic Intergenic -157502 NR_033192 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 329.5 chr1 50771140 50771598 + 1 NA intron (NM_007051, intron 4 of 18) L1PA15|LINE|L1 188898 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 158.5-20 chr14 33084546 33084888 + 1 NA intron (NM_001164749, intron 2 of 11) intron (NM_001164749, intron 2 of 11) 145838 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 262.5-8 chr14 43523975 43524394 + 1 NA Intergenic Intergenic 983099 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 273.75-2 chr12 118055948 118056305 + 1 NA intron (NM_001278557, intron 1 of 8) L2b|LINE|L2 5085 NM_001278558 55884 Hs.506985 NM_018639 ENSG00000176871 WSB2 SBA2 WD repeat and SOCS box containing 2 protein-coding 382.25-3 chr3 40707010 40707572 + 1 NA Intergenic L1MC1|LINE|L1 182331 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 165.75-116 chr9 119993732 119993928 + 1 NA Intergenic Zaphod2|DNA|hAT-Tip100 58770 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 348.75-12 chr8 83210629 83211371 + 1 NA Intergenic Intergenic -192758 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 201.5-59 chr6 123983318 123983736 + 1 NA intron (NM_001040214, intron 1 of 6) intron (NM_001040214, intron 1 of 6) 179662 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 156.25-8 chr10 119480607 119480772 + 1 NA Intergenic AluJo|SINE|Alu 55844 NM_002925 6001 Hs.501200 NM_002925 ENSG00000148908 RGS10 - regulator of G protein signaling 10 protein-coding 391.5-3 chr2 187886477 187886929 + 1 NA Intergenic HAL1ME|LINE|L1 -332198 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 184.75-59 chr4 111765230 111765549 + 1 NA Intergenic L1PA15|LINE|L1 -380065 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 195.5-37 chr3 26447962 26448452 + 1 NA Intergenic Intergenic -174599 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 227.5-4 chr10 67041749 67042067 + 1 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 29642 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 173.75-11 chr10 89496117 89496429 + 1 NA intron (NM_213606, intron 2 of 7) HAL1|LINE|L1 39321 NM_213606 387700 Hs.530338 NM_213606 ENSG00000152779 SLC16A12 CJMG|CRT2|CTRCT47|MCT12 solute carrier family 16 member 12 protein-coding 224.25-10 chr14 58134478 58134833 + 1 NA intron (NM_001320173, intron 2 of 4) intron (NM_001320173, intron 2 of 4) 17558 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 250.5-12 chr18 2176789 2177182 + 1 NA Intergenic AluSx|SINE|Alu 394520 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 181.75-57 chr6 57225256 57225632 + 1 NA Intergenic Intergenic -3130 NM_001278666 51715 Hs.555016 NM_016277 ENSG00000112210 RAB23 HSPC137 RAB23, member RAS oncogene family protein-coding 163.5-98 chr6 47908393 47908693 + 1 NA intron (NM_207499, intron 2 of 2) intron (NM_207499, intron 2 of 2) 121475 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 240.25-21 chr6 142765153 142765645 + 1 NA intron (NM_006734, intron 6 of 9) intron (NM_006734, intron 6 of 9) -127510 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 181.5-72 chr9 27064423 27064673 + 1 NA 3' UTR (NM_001349928, exon 20 of 20) 3' UTR (NM_001349928, exon 20 of 20) -44593 NM_001290078 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 236.75-24 chr5 68938152 68938470 + 1 NA Intergenic L1PA13|LINE|L1 91616 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 255.25-17 chr4 12662471 12662867 + 1 NA Intergenic MSTB|LTR|ERVL-MaLR 439218 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 213.75-12 chr2 29195921 29196219 + 1 NA intron (NM_004304, intron 28 of 28) intron (NM_004304, intron 28 of 28) 27830 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 200.5-32 chr2 79300381 79300789 + 1 NA Intergenic Intergenic -140832 NM_002580 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 284.5-2 chr12 39575747 39576298 + 1 NA intron (NM_005164, intron 8 of 9) intron (NM_005164, intron 8 of 9) 43781 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 158.25-49 chr2 16582899 16583212 + 1 NA intron (NM_030797, intron 3 of 11) L1MB8|LINE|L1 82779 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 200.75-34 chr3 155339535 155339750 + 1 NA Intergenic L2|LINE|L2 -45959 NM_001352129 100507537 Hs.518341 NM_001352129 ENSG00000240045 STRIT1 DWORF small transmembrane regulator of ion transport 1 protein-coding 184.75-55 chr4 69861404 69861749 + 1 NA Intergenic Intergenic -1431 NM_005420 6783 Hs.479898 NM_005420 ENSG00000109193 SULT1E1 EST|EST-1|ST1E1|STE sulfotransferase family 1E member 1 protein-coding 165.5-47 chr2 115199458 115199698 + 1 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) 37423 NM_001321909 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 267.25-16 chr9 26601792 26602129 + 1 NA Intergenic AluY|SINE|Alu 290842 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 251.75-20 chr3 197014699 197015264 + 1 NA intron (NM_005929, intron 9 of 15) MIR3|SINE|MIR 12075 NR_038285 100507057 Hs.666451 NR_038285 ENSG00000228109 MELTF-AS1 MFI2-AS1 MELTF antisense RNA 1 ncRNA 264.25-8 chr14 65418123 65418433 + 1 NA intron (NR_038170, intron 1 of 10) intron (NR_038170, intron 1 of 10) 5548 NR_038170 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 246.25-21 chr2 21964003 21964391 + 1 NA Intergenic L1ME4a|LINE|L1 -253545 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 224.75-7 chr10 102290262 102290642 + 1 NA intron (NM_001199378, intron 3 of 39) intron (NM_001199378, intron 3 of 39) 44920 NM_004193 8729 Hs.290243 NM_004193 ENSG00000107862 GBF1 ARF1GEF golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein-coding 201.5-46 chr4 72035931 72036257 + 1 NA intron (NM_004885, intron 1 of 3) intron (NM_004885, intron 1 of 3) -3038 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 233.75-4 chr11 95304963 95305336 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR -72674 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 289.5-3 chr10 33605140 33605701 + 1 NA Intergenic L1MEg|LINE|L1 167260 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 217.75-34 chr5 32429383 32429768 + 1 NA intron (NM_016107, intron 2 of 19) Tigger4a|DNA|TcMar-Tigger 15165 NM_016107 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 289.5-8 chr14 72124159 72124546 + 1 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 190825 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 244.5-9 chr14 77687227 77687515 + 1 NA intron (NM_006020, intron 3 of 5) intron (NM_006020, intron 3 of 5) 20652 NM_006020 8846 Hs.94542 NM_006020 ENSG00000100601 ALKBH1 ABH|ABH1|ALKBH|alkB|hABH alkB homolog 1, histone H2A dioxygenase protein-coding 166.5-22 chr14 66124499 66124705 + 1 NA Intergenic Intergenic -361769 NR_110307 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 162.25-13 chr12 62561406 62561699 + 1 NA intron (NM_001278469, intron 26 of 35) intron (NM_001278469, intron 26 of 35) 41882 NR_121682 283416 Hs.375881 NM_175895 ENSG00000221949 LINC01465 C12orf61 long intergenic non-protein coding RNA 1465 ncRNA 237.25-13 chr3 143316371 143316790 + 1 NA intron (NM_173653, intron 14 of 15) intron (NM_173653, intron 14 of 15) -25666 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 183.25-34 chr2 42021983 42022216 + 1 NA Intergenic L2|LINE|L2 -25922 NM_138370 91461 Hs.408542 NM_138370 ENSG00000162878 PKDCC SGK493|Vlk protein kinase domain containing, cytoplasmic protein-coding 245.5-27 chr5 22298079 22298535 + 1 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -84457 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 185.25-7 chr10 21236403 21236704 + 1 NA Intergenic AluSz6|SINE|Alu 62251 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 203.75-53 chr9 87302877 87303238 + 1 NA Intergenic Intergenic 154413 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 223.75-19 chr3 95422923 95423177 + 1 NA Intergenic Intergenic 260143 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 187.5-63 chr7 43023938 43024272 + 1 NA Intergenic L1ME3G|LINE|L1 -88542 NM_015052 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 191.25-8 chr1 180140726 180140977 + 1 NA Intergenic MER2B|DNA|TcMar-Tigger -13982 NM_001004128 5768 Hs.719176 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 172.5-89 chrX 97784785 97785088 + 1 NA Intergenic AluSx|SINE|Alu -220401 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 316.5-2 chr14 86341686 86342275 + 1 NA Intergenic L1PA13|LINE|L1 407302 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 285.75 chr14 40124329 40124658 + 1 NA Intergenic Intergenic -691993 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 166.5-21 chr14 62164444 62164642 + 1 NA Intergenic L2c|LINE|L2 -24570 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 373.5-3 chr20 41230065 41230711 + 1 NA intron (NM_015035, intron 2 of 3) intron (NM_015035, intron 2 of 3) 61365 NR_106931 102466912 NR_106931 ENSG00000276169 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 163.5-108 chr7 50643393 50643607 + 1 NA intron (NM_001350816, intron 6 of 17) L1MC4|LINE|L1 61801 NM_001001550 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 190.5-17 chr15 44149963 44150200 + 1 NA intron (NM_001286490, intron 1 of 15) L1M4c|LINE|L1 44365 NM_001286490 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 211.75-29 chr5 7686187 7686618 + 1 NA intron (NM_020546, intron 4 of 24) intron (NM_020546, intron 4 of 24) 164731 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 227.75-25 chr4 143046766 143047264 + 1 NA Intergenic Intergenic 137846 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 179.5-42 chr2 186850394 186850652 + 1 NA Intergenic Intergenic -1353 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 189.75-85 chrX 75360809 75361252 + 1 NA Intergenic Intergenic 86945 NM_145052 139596 Hs.91612 NM_145052 ENSG00000094841 UPRT FUR1|UPP uracil phosphoribosyltransferase homolog protein-coding 261.75-4 chr1 214674397 214674807 + 1 NA Intergenic Intergenic 71407 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 346.75-2 chr7 124824409 124825137 + 1 NA intron (NM_001042594, intron 17 of 17) intron (NM_001042594, intron 17 of 17) -33963 NM_001024603 154872 Hs.444163 NM_001024603 ENSG00000275356 C7orf77 - chromosome 7 open reading frame 77 protein-coding 176.5-24 chr15 97341821 97342016 + 1 NA Intergenic Intergenic 179893 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 372.25-4 chr4 122207895 122208407 + 1 NA intron (NM_015312, intron 15 of 83) MIR|SINE|MIR 37548 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 348.75-10 chr7 7179285 7179837 + 1 NA Intergenic Intergenic -3054 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 181.75-24 chr13 43025011 43025224 + 1 NA intron (NM_013238, intron 1 of 5) MIRb|SINE|MIR 1531 NM_013238 29103 Hs.438830 NM_013238 ENSG00000120675 DNAJC15 DNAJD1|HSD18|MCJ DnaJ heat shock protein family (Hsp40) member C15 protein-coding 255.5-16 chr2 76903278 76903716 + 1 NA intron (NR_146416, intron 1 of 1) AluYi6_4d|SINE|Alu -82468 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 258.25-6 chr13 34781563 34782035 + 1 NA Intergenic LTR37-int|LTR|ERV1 -141114 NR_047036 100874179 Hs.569253 NR_047036 ENSG00000225179 LINC00457 - long intergenic non-protein coding RNA 457 ncRNA 281.5-21 chr2 125468457 125469031 + 1 NA Intergenic Intergenic 649241 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 223.5-36 chr6 81966696 81966981 + 1 NA intron (NR_149135, intron 3 of 3) intron (NR_149135, intron 3 of 3) -28417 NR_149134 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 160.75-83 chr4 90370796 90371056 + 1 NA intron (NM_207491, intron 3 of 7) intron (NM_207491, intron 3 of 7) 135895 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 457.75 chr14 88345327 88346445 + 1 NA Intergenic Intergenic -18974 NM_021161 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 322.5-2 chr11 19397375 19397830 + 1 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 46878 NM_001111018 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 261.5-4 chr14 26408090 26408383 + 1 NA Intergenic MLT1H|LTR|ERVL-MaLR 145194 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 175.25-65 chr7 26108393 26108696 + 1 NA Intergenic AluJo|SINE|Alu -43654 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 262.5-9 chr14 43793860 43794413 + 1 NA Intergenic MIR|SINE|MIR 713147 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 187.25-39 chr3 4597772 4598086 + 1 NA intron (NM_001168272, intron 4 of 60) intron (NM_001168272, intron 4 of 60) 104581 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 355.25 chr10 51542181 51542714 + 1 NA intron (NM_001098512, intron 3 of 17) MIRb|SINE|MIR 157148 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 239.5-24 chr3 100365751 100366061 + 1 NA intron (NM_014820, intron 11 of 11) intron (NM_014820, intron 11 of 11) 31149 NM_020202 56954 Hs.439152 NM_020202 ENSG00000114021 NIT2 HEL-S-8a nitrilase family member 2 protein-coding 216.5-20 chr2 229078947 229079425 + 1 NA intron (NM_001330157, intron 1 of 1) intron (NM_001330157, intron 1 of 1) 152906 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 260.75-23 chr9 815999 816448 + 1 NA Intergenic L1MD1|LINE|L1 -25474 NM_021951 1761 Hs.98586 NM_021951 ENSG00000137090 DMRT1 CT154|DMT1 doublesex and mab-3 related transcription factor 1 protein-coding 201.25-29 chr20 49289156 49289378 + 1 NA TTS (NR_036659) TTS (NR_036659) 8584 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 224.5-12 chr14 50535022 50535587 + 1 NA intron (NM_001127713, intron 1 of 13) intron (NM_001127713, intron 1 of 13) 2222 NM_001127713 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 280.5-6 chr2 161521919 161522592 + 1 NA Intergenic L1MB3|LINE|L1 -14353 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 240.5-4 chr10 82107584 82107892 + 1 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 125182 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 160.5 chr1 21737700 21737945 + 1 NA intron (NM_001350167, intron 8 of 26) intron (NM_001350167, intron 8 of 26) 45327 NM_001350168 84196 Hs.467524 NM_032236 ENSG00000090686 USP48 RAP1GA1|USP31 ubiquitin specific peptidase 48 protein-coding 186.5-28 chr2 142186599 142186918 + 1 NA Intergenic L1MA6|LINE|L1 -55057 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 154.75-63 chr3 82573261 82573449 + 1 NA Intergenic Intergenic 587213 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 300.75-6 chr6 148699913 148700470 + 1 NA Intergenic Intergenic -46839 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 210.5-13 chr14 53796032 53796375 + 1 NA Intergenic MER113A|DNA|hAT-Charlie 152281 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 170.75-61 chr6 129311827 129312146 + 1 NA intron (NM_000426, intron 22 of 64) L1M6|LINE|L1 398191 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 247.5-12 chr12 62967681 62968052 + 1 NA Intergenic L2c|LINE|L2 -32716 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 146.75-65 chr21 28530613 28530815 + 1 NA Intergenic L1MC2|LINE|L1 -8604 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 258.75-23 chr9 89734430 89734750 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger 94807 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 214.75-10 chr10 15788496 15788736 + 1 NA intron (NM_024948, intron 12 of 14) intron (NM_024948, intron 12 of 14) -68281 NM_001291494 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 227.5-37 chr9 80021455 80021794 + 1 NA intron (NR_121212, intron 3 of 4) intron (NR_121212, intron 3 of 4) 46601 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 230.5-16 chr2 36516259 36516685 + 1 NA intron (NM_016441, intron 11 of 16) intron (NM_016441, intron 11 of 16) 81696 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 146.75-98 chr6 81757801 81758080 + 1 NA Intergenic MIRc|SINE|MIR -5259 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 167.5-80 chr5 120506854 120507187 + 1 NA intron (NM_016644, intron 2 of 2) intron (NM_016644, intron 2 of 2) -24444 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 272.75-4 chr12 42738240 42738598 + 1 NA Intergenic Intergenic 46203 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 300.75 chr1 98450995 98451582 + 1 NA Intergenic Intergenic -210433 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 173.25-33 chr2 12546383 12546637 + 1 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) -170362 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 258.5-16 chr3 27231496 27231913 + 1 NA intron (NM_199347, intron 24 of 24) L1PB2|LINE|L1 -15181 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 200.5-9 chr10 84925345 84925651 + 1 NA Intergenic Intergenic 273407 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 209.25-23 chr2 43531297 43531683 + 1 NA intron (NM_001083953, intron 21 of 37) intron (NM_001083953, intron 21 of 37) 64484 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 270.5-4 chr11 64904263 64904628 + 1 NA intron (NM_015104, intron 24 of 40) AluSg|SINE|Alu -1990 NR_106807 102466727 NR_106807 ENSG00000274314 MIR6749 hsa-mir-6749 microRNA 6749 ncRNA 182.5-31 chr2 156982900 156983216 + 1 NA Intergenic Intergenic -274647 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 285.5-12 chr4 108612273 108612803 + 1 NA intron (NR_026968, intron 1 of 3) MIRb|SINE|MIR 7919 NR_026968 285456 Hs.683863 NM_182591 ENSG00000234492 RPL34-AS1 - RPL34 antisense RNA 1 (head to head) ncRNA 172.5-24 chr14 52490603 52490795 + 1 NA intron (NM_001160047, intron 10 of 20) intron (NM_001160047, intron 10 of 20) 61806 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 208.5-57 chr8 106153905 106154203 + 1 NA Intergenic Intergenic -93551 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 196.25-42 chr3 162328520 162328841 + 1 NA Intergenic L1M4|LINE|L1 831872 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 216.5-11 chr14 70963005 70963351 + 1 NA intron (NM_014982, intron 3 of 35) intron (NM_014982, intron 3 of 35) 55719 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 225.25-3 chr1 188678560 188678957 + 1 NA Intergenic MER44B|DNA|TcMar-Tigger 1235130 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 184.5-49 chr21 14903242 14903547 + 1 NA intron (NR_146322, intron 1 of 3) intron (NR_146322, intron 1 of 3) 15274 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 229.5-15 chr16 76303821 76304142 + 1 NA intron (NM_001322189, intron 2 of 24) intron (NM_001322189, intron 2 of 24) -5871 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 153.5-18 chr11 59528193 59528412 + 1 NA Intergenic Intergenic 13389 NM_001004711 390199 Hs.553757 NM_001004711 ENSG00000172742 OR4D9 OR11-253 olfactory receptor family 4 subfamily D member 9 protein-coding 241.5 chr1 25065366 25065783 + 1 NA Intergenic Intergenic 42071 NR_039623 100616365 NR_039623 ENSG00000264371 MIR4425 - microRNA 4425 ncRNA 222.25-9 chr12 125939308 125939713 + 1 NA Intergenic Intergenic 43864 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 233.5-16 chr22 45190987 45191349 + 1 NA non-coding (NR_146602, exon 1 of 4) non-coding (NR_146602, exon 1 of 4) 444 NR_146602 105373064 NR_146602 LOC105373064 - uncharacterized LOC105373064 ncRNA 162.5-84 chr7 54961274 54961632 + 1 NA Intergenic Intergenic -57564 NM_005228 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 160.75-26 chr12 62357403 62357719 + 1 NA intron (NR_147080, intron 6 of 19) intron (NR_147080, intron 6 of 19) 97157 NM_001351165 9958 Hs.434951 NM_006313 ENSG00000135655 USP15 UNPH-2|UNPH4 ubiquitin specific peptidase 15 protein-coding 174.75-52 chr5 84931700 84931973 + 1 NA Intergenic Intergenic -546956 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 396.75-2 chr6 161969368 161969959 + 1 NA intron (NM_004562, intron 6 of 11) MER72|LTR|ERV1 498686 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 193.5-13 chr11 87844076 87844352 + 1 NA Intergenic MIRc|SINE|MIR -124803 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 241.5-34 chr8 125551138 125551552 + 1 NA Intergenic Intergenic 119136 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 321.25-2 chr10 76446365 76446995 + 1 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -441364 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 385.75-3 chr7 54963888 54964745 + 1 NA Intergenic MLT1F1|LTR|ERVL-MaLR -54701 NM_005228 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 236.5-29 chr6 54253159 54253568 + 1 NA intron (NM_138569, intron 11 of 12) intron (NM_138569, intron 11 of 12) -55078 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 261.25 chr1 98615367 98615749 + 1 NA Intergenic Intergenic -46163 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 327.25-6 chr7 138293544 138294024 + 1 NA Intergenic AluSq2|SINE|Alu -166475 NM_003852 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 251.5-6 chr11 60612036 60612367 + 1 NA Intergenic Intergenic -3550 NR_026946 283197 Hs.372650 NM_174939 ENSG00000181995 LINC00301 C11orf64|NCRNA00301 long intergenic non-protein coding RNA 301 ncRNA 179.5-32 chr18 3804740 3805041 + 1 NA intron (NM_001242762, intron 2 of 9) intron (NM_001242762, intron 2 of 9) 40468 NM_001003809 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 160.5-59 chr3 927076 927366 + 1 NA Intergenic Intergenic -165803 NM_001349359 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 320.5-2 chr11 105284481 105284883 + 1 NA Intergenic L1MEc|LINE|L1 -144913 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 319.75-4 chr6 66776819 66777207 + 1 NA Intergenic L1PREC2|LINE|L1 989134 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 277.75-6 chr2 133062759 133063324 + 1 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 147484 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 352.5 chr2 45593432 45594038 + 1 NA intron (NM_018079, intron 4 of 20) intron (NM_018079, intron 4 of 20) 17532 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 165.75-62 chr3 96797667 96798012 + 1 NA Intergenic Intergenic -16755 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 240.5-25 chr5 96352553 96352938 + 1 NA intron (NR_130776, intron 3 of 4) THE1D|LTR|ERVL-MaLR 79414 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 179.5-50 chr22 27210214 27210532 + 1 NA Intergenic Intergenic 14306 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 281.75-14 chr5 85602256 85602661 + 1 NA Intergenic Intergenic -679986 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 187.5-24 chr17 79014346 79014717 + 1 NA Intergenic MER41-int|LTR|ERV1 -4767 NM_138793 124583 Hs.8859 NM_138793 ENSG00000171302 CANT1 DBQD|DBQD1|EDM7|SCAN-1|SCAN1|SHAPY calcium activated nucleotidase 1 protein-coding 148.75-109 chr9 31619137 31619368 + 1 NA Intergenic Intergenic -237762 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 310.5-7 chr8 64707475 64708016 + 1 NA intron (NM_004820, intron 1 of 5) intron (NM_004820, intron 1 of 5) 90992 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 177.75-52 chr4 33277892 33278199 + 1 NA Intergenic (TTATTA)n|Simple_repeat|Simple_repeat 761848 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 202.25-25 chr17 61103598 61103901 + 1 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 263955 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 269.25-2 chr1 89641895 89642225 + 1 NA intron (NM_032270, intron 1 of 2) intron (NM_032270, intron 1 of 2) 8940 NM_032270 84230 Hs.412836 NM_032270 ENSG00000171488 LRRC8C AD158|FAD158 leucine rich repeat containing 8 VRAC subunit C protein-coding 233.25-15 chr2 37253251 37253649 + 1 NA non-coding (NR_146406, exon 11 of 11) non-coding (NR_146406, exon 11 of 11) 21792 NM_001083946 55471 Hs.433466 NM_018607 ENSG00000003509 NDUFAF7 C2orf56|MidA|PRO1853 NADH:ubiquinone oxidoreductase complex assembly factor 7 protein-coding 294.5 chr10 6688136 6688513 + 1 NA Intergenic Intergenic -49058 NR_138480 108570035 Hs.568834 NR_138480 LINP1 - lncRNA in non-homologous end joining pathway 1 ncRNA 172.75-74 chr9 29250881 29251211 + 1 NA Intergenic MamRep605|LTR?|LTR? -37445 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 148.75-43 chr2 14304267 14304570 + 1 NA intron (NR_103814, intron 2 of 3) intron (NR_103814, intron 2 of 3) 96540 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 302.25-6 chr14 50725705 50726143 + 1 NA TTS (NM_182946) TTS (NM_182946) -57618 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 177.75-51 chr3 190275450 190275767 + 1 NA Intergenic L1PB4|LINE|L1 46838 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 212.5-40 chr4 172492706 172493051 + 1 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) 196039 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 221.75-19 chr2 1071424 1072011 + 1 NA intron (NM_018968, intron 1 of 16) Tigger1|DNA|TcMar-Tigger -120325 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 300.25-3 chr10 82946812 82947335 + 1 NA intron (NR_163253, intron 6 of 10) L1ME1|LINE|L1 -714153 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 195.25-64 chr8 137350593 137350793 + 1 NA Intergenic L1PA14|LINE|L1 62895 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 241.75-27 chr8 122381892 122382231 + 1 NA Intergenic Intergenic 186583 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 181.5-79 chrX 94469034 94469309 + 1 NA Intergenic L1MEg|LINE|L1 594055 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 291.75-10 chrX 27630584 27631178 + 1 NA intron (NM_001353450, intron 1 of 4) MLT1A0|LTR|ERVL-MaLR 40537 NM_001353449 347442 Hs.720885 NM_001136533 ENSG00000189186 DCAF8L2 WDR42C DDB1 and CUL4 associated factor 8 like 2 protein-coding 324.75-8 chr7 44300711 44301250 + 1 NA intron (NM_172081, intron 1 of 18) L1MC2|LINE|L1 24614 NM_172080 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 165.25-27 chr2 188676283 188676612 + 1 NA Intergenic L2a|LINE|L2 113676 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 193.5-35 chr2 39855800 39856010 + 1 NA Intergenic Intergenic -61729 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 217.25-13 chr11 28698778 28699142 + 1 NA Intergenic AluSz|SINE|Alu -221412 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 269.75-8 chr3 84746359 84746836 + 1 NA intron (NR_033860, intron 10 of 20) intron (NR_033860, intron 10 of 20) 122978 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 203.25-17 chr18 11197187 11197755 + 1 NA Intergenic AluY|SINE|Alu -48709 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 225.5-17 chr18 60717637 60717968 + 1 NA Intergenic Intergenic -345027 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 214.5-7 chr13 32227974 32228305 + 1 NA intron (NM_023037, intron 39 of 60) intron (NM_023037, intron 39 of 60) 83815 NM_001136571 646799 Hs.569254 NM_001136571 ENSG00000189167 ZAR1L Z3CXXC7|ZAR2 zygote arrest 1 like protein-coding 465.75-2 chr5 174254097 174254833 + 1 NA Intergenic L1ME3D|LINE|L1 -81889 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 348.25-5 chr8 113923511 113923970 + 1 NA Intergenic MLT1A1|LTR|ERVL-MaLR -486801 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 158.5-107 chrX 147964864 147965086 + 1 NA Intergenic L2c|LINE|L2 -16362 NM_152578 158521 Hs.128580 NM_152578 ENSG00000176988 FMR1NB CT37|NY-SAR-35|NYSAR35 FMR1 neighbor protein-coding 274.25 chr10 51187678 51188124 + 1 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -111672 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 235.75-31 chr8 67758404 67758820 + 1 NA Intergenic MER92-int|LTR|ERV1 -12252 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 255.25-3 chr1 175918780 175919229 + 1 NA Intergenic FLAM_A|SINE|Alu 41661 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 156.5-51 chr2 73432658 73433064 + 1 NA intron (NM_015120, intron 7 of 22) intron (NM_015120, intron 7 of 22) -24242 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 151.5-72 chr3 174114726 174114970 + 1 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -194052 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 220.5-33 chr6 74225825 74226136 + 1 NA intron (NR_110856, intron 1 of 3) L1MDa|LINE|L1 156529 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 380.75 chr2 123016986 123017660 + 1 NA Intergenic L1MA9|LINE|L1 56158 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 160.5-35 chr15 23596404 23596587 + 1 NA Intergenic LOR1-int|LTR|ERV1 30821 NM_005664 7681 Hs.72964 NM_005664 ENSG00000179455 MKRN3 CPPB2|D15S9|RNF63|ZFP127|ZNF127 makorin ring finger protein 3 protein-coding 176.5-64 chr5 11691936 11692222 + 1 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -103013 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 157.75-17 chr10 67601997 67602279 + 1 NA intron (NM_001127384, intron 3 of 17) intron (NM_001127384, intron 3 of 17) 63522 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 220.25-42 chr7 80154132 80154396 + 1 NA intron (NM_001256414, intron 1 of 7) intron (NM_001256414, intron 1 of 7) 18480 NM_001256414 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 210.25-35 chr5 97879284 97879504 + 1 NA intron (NR_146299, intron 1 of 2) intron (NR_146299, intron 1 of 2) 38636 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 147.5-62 chr3 103805836 103806089 + 1 NA Intergenic L1PA16|LINE|L1 -281846 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 161.75-9 chr11 85620902 85621107 + 1 NA intron (NM_001351274, intron 2 of 26) Tigger1|DNA|TcMar-Tigger 6266 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 180.5-49 chr3 128184524 128184742 + 1 NA intron (NM_021937, intron 1 of 6) intron (NM_021937, intron 1 of 6) -30719 NM_001319086 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 151.75-39 chr17 72283935 72284203 + 1 NA Intergenic Intergenic -58742 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 189.75-83 chr9 124914667 124914890 + 1 NA intron (NM_002077, intron 10 of 22) MIRb|SINE|MIR 26305 NM_002077 2800 Hs.59504 NM_002077 ENSG00000136935 GOLGA1 golgin-97 golgin A1 protein-coding 247.75-23 chr5 109060830 109061514 + 1 NA intron (NR_146155, intron 16 of 19) intron (NR_146155, intron 16 of 19) 136566 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 262.5-2 chr1 186586874 186587332 + 1 NA Intergenic Intergenic 93320 NM_000963 5743 Hs.196384 NM_000963 ENSG00000073756 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 protein-coding 255.75-14 chr7 49042743 49043085 + 1 NA Intergenic L1M1|LINE|L1 118367 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 251.25-18 chr2 185062594 185063035 + 1 NA Intergenic Intergenic 104258 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 222.75-3 chr10 61654881 61655406 + 1 NA Intergenic Intergenic -7786 NM_001366909 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 301.75-6 chr4 99832933 99833607 + 1 NA intron (NM_001306151, intron 1 of 9) intron (NM_001306151, intron 1 of 9) 16443 NM_001306151 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 178.75-53 chr5 55964633 55964874 + 1 NA intron (NM_001364277, intron 4 of 16) intron (NM_001364277, intron 4 of 16) 30210 NR_157112 3572 Hs.532082 NM_002184 ENSG00000134352 IL6ST CD130|CDW130|GP130|IL-6RB interleukin 6 signal transducer protein-coding 411.5-3 chr8 120054953 120055529 + 1 NA Intergenic Intergenic -69861 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 279.5-17 chr8 133280270 133280755 + 1 NA intron (NM_001135242, intron 2 of 15) AluY|SINE|Alu 16740 NM_001135242 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 289.5-16 chr7 88572494 88573043 + 1 NA Intergenic L1ME3C|LINE|L1 -186932 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 255.5-24 chr4 31416929 31417356 + 1 NA Intergenic Intergenic -89402 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 164.75-24 chr15 88505523 88505962 + 1 NA intron (NR_135742, intron 6 of 6) intron (NR_135742, intron 6 of 6) 38034 NR_135918 64963 Hs.111286 NM_022839 ENSG00000181991 MRPS11 HCC-2|MRP-S11|S11mt mitochondrial ribosomal protein S11 protein-coding 173.25-54 chr4 35656926 35657299 + 1 NA Intergenic Intergenic 586827 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 215.25-13 chr14 72778088 72778448 + 1 NA intron (NM_001280542, intron 1 of 10) MER1A|DNA|hAT-Charlie 114381 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 225.5-41 chr5 111186824 111187216 + 1 NA Intergenic Intergenic -36563 NM_001323375 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 265.25-6 chr12 115120988 115121654 + 1 NA Intergenic MLT1J2|LTR|ERVL-MaLR -437146 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 247.75-12 chr15 64422484 64422942 + 1 NA intron (NM_001321924, intron 9 of 12) intron (NM_001321924, intron 9 of 12) 34877 NR_135855 9325 Hs.500340 NM_016213 ENSG00000103671 TRIP4 ASC-1|ASC1|HsT17391|MDCDC|SMABF1|ZC2HC5 thyroid hormone receptor interactor 4 protein-coding 373.25-4 chr6 67374620 67375217 + 1 NA Intergenic Intergenic -680433 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 257.5-17 chr4 30814061 30814462 + 1 NA intron (NM_032457, intron 1 of 2) (TA)n|Simple_repeat|Simple_repeat 93892 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 250.5-7 chr13 81392328 81392701 + 1 NA Intergenic L1MA4A|LINE|L1 -165531 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 155.25-90 chr8 86869755 86870010 + 1 NA intron (NM_173538, intron 1 of 10) intron (NM_173538, intron 1 of 10) 3467 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 172.5-77 chr7 66059844 66060088 + 1 NA Intergenic FLAM_C|SINE|Alu -15853 NM_001024944 435 Hs.632015 NM_000048 ENSG00000126522 ASL ASAL argininosuccinate lyase protein-coding 148.5-25 chr13 103089524 103089811 + 1 NA Intergenic L1ME2|LINE|L1 -23250 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 164.5-65 chr5 39382003 39382300 + 1 NA intron (NM_001343, intron 10 of 14) intron (NM_001343, intron 10 of 14) -17656 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 290.25-10 chr21 24516645 24517179 + 1 NA intron (NR_135519, intron 1 of 2) L1PA10|LINE|L1 88172 NR_135519 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 182.5-25 chr2 28208179 28208541 + 1 NA intron (NM_199193, intron 8 of 13) intron (NM_199193, intron 8 of 13) -1399 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 251.5-17 chr2 199983707 199984054 + 1 NA Intergenic Intergenic -28389 NR_004862 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 232.25-17 chr18 55011633 55011905 + 1 NA Intergenic Intergenic -52308 NM_025214 80323 Hs.120790 NM_025214 ENSG00000166510 CCDC68 SE57-1 coiled-coil domain containing 68 protein-coding 174.75-54 chr5 110687703 110688046 + 1 NA intron (NM_001039763, intron 1 of 13) L3|LINE|CR1 38797 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 297.5-12 chr6 143142746 143143225 + 1 NA intron (NM_001366353, intron 2 of 4) intron (NM_001366353, intron 2 of 4) 16846 NM_001366358 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 264.5-16 chr2 189643685 189644097 + 1 NA Intergenic Intergenic -17508 NM_001353493 110599588 Hs.101364 NM_001353493 ENSG00000286053 ASDURF ASNSD1|ASNSD1-SEP|NS3TP1 ASNSD1 upstream reading frame protein-coding 247.5-13 chr13 54182462 54182849 + 1 NA Intergenic Intergenic -49784 NR_108062 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 247.25-15 chr4 61187934 61188340 + 1 NA Intergenic Intergenic -13093 NM_001371344 240.25-18 chr5 96001535 96001980 + 1 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 39756 NR_130776 101929710 NR_130776 ENSG00000251314 LOC101929710 - uncharacterized LOC101929710 ncRNA 224.25-20 chr2 128408251 128408655 + 1 NA Intergenic Intergenic -89585 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 199.5-30 chr3 102105733 102106069 + 1 NA Intergenic AluJo|SINE|Alu -57804 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 175.5-63 chr3 114306683 114306951 + 1 NA intron (NM_173799, intron 3 of 3) Charlie4z|DNA|hAT-Charlie 9752 NR_030293 693153 NR_030293 ENSG00000284134 MIR568 MIRN568|hsa-mir-568 microRNA 568 ncRNA 493.5-2 chr2 194283642 194284479 + 1 NA Intergenic Intergenic -60209 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 405.75 chr13 76859454 76860039 + 1 NA Intergenic L1M5|LINE|L1 26659 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 178.5-47 chr3 10577922 10578228 + 1 NA intron (NM_001353564, intron 1 of 20) MIR|SINE|MIR 41886 NM_001353564 491 Hs.268942 NM_001683 ENSG00000157087 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase plasma membrane Ca2+ transporting 2 protein-coding 215.5-53 chr9 77095923 77096236 + 1 NA Intergenic AluSz|SINE|Alu 76424 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 182.5-15 chr14 36482198 36482472 + 1 NA intron (NR_161365, intron 2 of 4) (TTACA)n|Simple_repeat|Simple_repeat 31200 NR_161362 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H|SPH surfactant associated 3 ncRNA 327.5-8 chr5 27845451 27846080 + 1 NA Intergenic Intergenic 373473 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 251.25 chr1 13968990 13969513 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR 219836 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 156.25-24 chr14 85865840 85866067 + 1 NA Intergenic Intergenic -68725 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 190.75-74 chr9 78996655 78996866 + 1 NA Intergenic L1MB7|LINE|L1 148906 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 185.5-7 chr1 151313202 151313445 + 1 NA intron (NM_002651, intron 3 of 12) intron (NM_002651, intron 3 of 12) 14093 NM_002651 5298 Hs.632465 NM_002651 ENSG00000143393 PI4KB NPIK|PI4K-BETA|PI4K92|PI4KBETA|PI4KIIIBETA|PIK4CB phosphatidylinositol 4-kinase beta protein-coding 172.75-66 chr8 71177283 71177530 + 1 NA Intergenic Intergenic 179300 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 155.5-55 chr2 210384969 210385273 + 1 NA intron (NR_110606, intron 1 of 4) intron (NR_110606, intron 1 of 4) 60409 NR_110604 102724820 Hs.659232 NR_110604 LANCL1-AS1 LANCLOT LANCL1 antisense RNA 1 ncRNA 241.5-23 chr5 13041564 13041972 + 1 NA Intergenic L1M1|LINE|L1 -8882 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 212.5-59 chrX 30118514 30118862 + 1 NA Intergenic AluSx1|SINE|Alu -96875 NM_002364 4113 Hs.113824 NM_002364 ENSG00000099399 MAGEB2 CT3.2|DAM6|MAGE-XP-2 MAGE family member B2 protein-coding 189.5-48 chr4 70605680 70605881 + 1 NA intron (NM_016519, intron 12 of 12) L4_B_Mam|LINE|RTE-X 13524 NM_016519 258 Hs.272396 NM_016519 ENSG00000178522 AMBN AI1F ameloblastin protein-coding 152.5-77 chr4 35420089 35420286 + 1 NA Intergenic Intergenic 823752 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 170.25-4 chr1 216438295 216438560 + 1 NA Intergenic Intergenic -14979 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 154.25-41 chr18 32709840 32710097 + 1 NA intron (NM_020805, intron 3 of 8) intron (NM_020805, intron 3 of 8) 63055 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 253.75-26 chr7 89297977 89298449 + 1 NA intron (NM_181646, intron 2 of 3) (AT)n|Simple_repeat|Simple_repeat -502476 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 339.25-3 chr14 83024819 83025447 + 1 NA Intergenic L2|LINE|L2 382501 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 321.75-2 chr2 187097901 187098528 + 1 NA Intergenic Intergenic -249044 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 238.5-28 chr4 107647777 107648236 + 1 NA intron (NM_005443, intron 9 of 11) intron (NM_005443, intron 9 of 11) 72228 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 330.25 chr11 105434947 105436020 + 1 NA Intergenic L1MDa|LINE|L1 -174590 NM_001077243 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 400.25-2 chr4 93475585 93476296 + 1 NA intron (NM_001286838, intron 10 of 14) intron (NM_001286838, intron 10 of 14) -352813 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 199.25-62 chr7 40265218 40265506 + 1 NA intron (NM_001193312, intron 7 of 12) intron (NM_001193312, intron 7 of 12) 130386 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 364.75-6 chr8 120291810 120292280 + 1 NA intron (NM_021110, intron 34 of 47) intron (NM_021110, intron 34 of 47) 153105 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 307.75-6 chr4 73663143 73663792 + 1 NA Intergenic Intergenic -42836 NM_001270392 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 201.25-43 chr6 155184765 155185062 + 1 NA intron (NM_012454, intron 13 of 25) intron (NM_012454, intron 13 of 25) -32053 NM_001010927 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 267.25-3 chr14 80882880 80883334 + 1 NA intron (NM_152446, intron 8 of 24) L1MA2|LINE|L1 58631 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 161.5-24 chr11 90924397 90924632 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -55312 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 224.5-19 chr20 13766146 13766434 + 1 NA intron (NM_001276380, intron 8 of 13) L1MEd|LINE|L1 18596 NM_016649 51575 Hs.369284 NM_016649 ENSG00000089048 ESF1 ABTAP|C20orf6|HDCMC28P|bA526K24.1 ESF1 nucleolar pre-rRNA processing protein homolog protein-coding 197.75-43 chr3 150066676 150066947 + 1 NA Intergenic Intergenic -29632 NR_136187 105374313 Hs.151216 NR_136187 LOC105374313 - uncharacterized LOC105374313 ncRNA 301.25-13 chr9 24695565 24696009 + 1 NA Intergenic L1MD1|LINE|L1 -149890 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 255.25-23 chr6 160947122 160947503 + 1 NA Intergenic AluJr|SINE|Alu -44415 NR_120425 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 221.25-2 chr1 82318169 82318492 + 1 NA Intergenic L1ME3A|LINE|L1 515877 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 382.5-4 chr8 115696931 115697611 + 1 NA Intergenic Intergenic -28296 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 313.5-4 chr2 4443920 4444340 + 1 NA Intergenic Intergenic 212092 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 155.5-82 chr5 10891258 10891488 + 1 NA Intergenic MLT1B|LTR|ERVL-MaLR -130139 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 266.25-7 chr2 211429042 211429575 + 1 NA intron (NM_001042599, intron 21 of 26) intron (NM_001042599, intron 21 of 26) 811737 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 197.5-56 chr7 26191709 26191932 + 1 NA 3' UTR (NM_031243, exon 12 of 12) 3' UTR (NM_031243, exon 12 of 12) 8926 NM_031243 3181 Hs.487774 NM_002137 ENSG00000122566 HNRNPA2B1 HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|RNPA2|SNRPB1 heterogeneous nuclear ribonucleoprotein A2/B1 protein-coding 223.75-27 chr9 100160523 100160917 + 1 NA intron (NR_134606, intron 3 of 16) intron (NR_134606, intron 3 of 16) 61477 NM_014425 27130 Hs.558477 NM_014425 ENSG00000119509 INVS INV|NPH2|NPHP2 inversin protein-coding 196.5-31 chr22 24936470 24936744 + 1 NA intron (NM_001001663, intron 3 of 3) L2c|LINE|L2 10088 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 217.75-33 chr5 22740627 22740996 + 1 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 112533 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 189.5-40 chr3 21945081 21945409 + 1 NA Intergenic GA-rich|Low_complexity|Low_complexity -11894 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 240.5-5 chr12 21379960 21380542 + 1 NA TTS (NM_000415) TTS (NM_000415) 7349 NM_000415 3375 Hs.46835 NM_000415 ENSG00000121351 IAPP DAP|IAP islet amyloid polypeptide protein-coding 168.75-59 chr20 18107207 18107415 + 1 NA Intergenic Intergenic -30552 NM_001164811 100303755 Hs.488051 NM_001164811 ENSG00000232838 PET117 CSRP2BP PET117 cytochrome c oxidase chaperone protein-coding 189.5-78 chrX 94449387 94449647 + 1 NA Intergenic L1MB3|LINE|L1 613709 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 232.25-20 chr2 122751592 122752198 + 1 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat 321586 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 461.5 chr4 122587372 122587939 + 1 NA Intergenic Intergenic -31328 NR_104126 100996941 Hs.439487 NR_104126 ENSG00000227145 IL21-AS1 - IL21 antisense RNA 1 ncRNA 322.25-2 chr17 71239319 71239861 + 1 NA Intergenic Intergenic -37411 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 324.5-8 chr5 147102280 147102822 + 1 NA Intergenic Intergenic -21031 NM_001271900 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 268.5-23 chr6 51805030 51805495 + 1 NA intron (NM_138694, intron 52 of 66) L1PA16|LINE|L1 183392 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 173.75-2 chr1 79995011 79995316 + 1 NA Intergenic Intergenic -540592 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 192.5-63 chr9 73445116 73445445 + 1 NA Intergenic L1MEf|LINE|L1 293415 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 276.25-14 chr8 113055004 113055665 + 1 NA intron (NM_001363185, intron 5 of 66) L2a|LINE|L2 321818 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 145.75-29 chr13 68121304 68121478 + 1 NA Intergenic Intergenic 749004 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 190.25-38 chr5 132585774 132586135 + 1 NA intron (NM_005732, intron 5 of 24) L1ME1|LINE|L1 28977 NM_005732 10111 Hs.633509 NM_005732 ENSG00000113522 RAD50 NBSLD|RAD502|hRad50 RAD50 double strand break repair protein protein-coding 253.5-15 chr3 28107903 28108401 + 1 NA Intergenic Intergenic -133467 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 299.25-3 chr12 39239862 39240248 + 1 NA Intergenic MLT1J1|LTR|ERVL-MaLR 203065 NM_001173464 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 208.5-4 chr1 241249967 241250295 + 1 NA intron (NM_001282778, intron 2 of 16) intron (NM_001282778, intron 2 of 16) 105695 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 315.5-2 chr1 77442812 77443165 + 1 NA intron (NM_012093, intron 8 of 13) MER65A|LTR|ERV1 159901 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 251.25-21 chr4 12314997 12315326 + 1 NA Intergenic MER41A|LTR|ERV1 91710 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 161.75-71 chr4 174284630 174284938 + 1 NA promoter-TSS (NM_012180) promoter-TSS (NM_012180) -533 NM_012180 26269 Hs.76917 NM_012180 ENSG00000164117 FBXO8 DC10|FBS|FBX8 F-box protein 8 protein-coding 231.75-12 chr17 13365196 13365579 + 1 NA Intergenic Intergenic -58627 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 474.75 chr8 78809470 78810401 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -4412 NM_001199888 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 311.5-6 chr2 16606544 16606936 + 1 NA intron (NM_030797, intron 2 of 11) intron (NM_030797, intron 2 of 11) 59094 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 244.25-12 chr2 62212077 62212501 + 1 NA intron (NM_006577, intron 1 of 1) LTR41|LTR|ERVL -3232 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 216.5-48 chr9 100096357 100096665 + 1 NA intron (NM_015051, intron 1 of 11) L4_C_Mam|LINE|RTE-X 2489 NM_015051 23071 Hs.154023 NM_015051 ENSG00000023318 ERP44 PDIA10|TXNDC4 endoplasmic reticulum protein 44 protein-coding 248.5-24 chr7 45507287 45507868 + 1 NA Intergenic L1MC1|LINE|L1 -66563 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 188.25-9 chr11 103347257 103347459 + 1 NA intron (NM_001377, intron 82 of 88) L1MC5a|LINE|L1 237932 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 182.75-30 chr17 33361602 33361897 + 1 NA intron (NM_001094, intron 1 of 9) MIRc|SINE|MIR -68761 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 326.25-6 chr8 113900688 113901080 + 1 NA Intergenic Intergenic -463945 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 209.5-43 chr6 39654577 39655102 + 1 NA intron (NM_001289020, intron 3 of 21) L1ME3G|LINE|L1 70569 NM_001289020 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 290.5-13 chr6 147450167 147450584 + 1 NA Intergenic HAL1b|LINE|L1 -58315 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 179.25-15 chr11 14790819 14791149 + 1 NA intron (NM_000922, intron 4 of 15) MER3|DNA|hAT-Charlie 101221 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 193.75-9 chr11 22836968 22837466 + 1 NA Intergenic MER4B-int|LTR|ERV1 -7416 NM_148893 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 229.25-24 chr6 123252295 123252605 + 1 NA intron (NM_006073, intron 37 of 40) intron (NM_006073, intron 37 of 40) -187154 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 255.25-22 chr6 85156814 85157272 + 1 NA Intergenic Intergenic 233143 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 318.25-4 chr5 23770094 23770663 + 1 NA Intergenic Intergenic -180970 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 254.5-9 chr14 84427477 84427972 + 1 NA Intergenic Charlie17|DNA|hAT-Charlie -844208 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 200.25-22 chr16 25677194 25677439 + 1 NA Intergenic Intergenic -14643 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 226.25-8 chr14 82536296 82536579 + 1 NA Intergenic Intergenic -106195 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 271.5-4 chr12 40062192 40062709 + 1 NA intron (NM_052885, intron 1 of 9) intron (NM_052885, intron 1 of 9) 43631 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 151.5-75 chr4 54585209 54585418 + 1 NA Intergenic MIR|SINE|MIR 21818 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 174.75-42 chr3 137287872 137288162 + 1 NA Intergenic L1MEc|LINE|L1 330034 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 340.25-6 chrX 154538023 154538683 + 1 NA intron (NM_000402, intron 2 of 12) L1ME2|LINE|L1 -3859 NM_001321396 8517 Hs.43505 NM_003639 ENSG00000269335 IKBKG AMCBX1|EDAID1|FIP-3|FIP3|Fip3p|IKK-gamma|IKKAP1|IKKG|IMD33|IP|IP1|IP2|IPD2|NEMO|ZC2HC9 inhibitor of nuclear factor kappa B kinase regulatory subunit gamma protein-coding 243.5-2 chr10 66449554 66449926 + 1 NA intron (NM_001127384, intron 11 of 17) intron (NM_001127384, intron 11 of 17) -476296 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 290.5-19 chr8 133931571 133932181 + 1 NA Intergenic L1MC3|LINE|L1 45380 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 296.25-12 chr8 110759009 110759470 + 1 NA Intergenic Intergenic 268194 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 371.25 chrX 52316271 52316951 + 1 NA Intergenic L1PA5|LINE|L1 20031 NR_107055 102466880 NR_107055 ENSG00000275335 MIR8088 hsa-mir-8088 microRNA 8088 ncRNA 158.5-87 chr5 114028831 114029056 + 1 NA Intergenic L1MC5a|LINE|L1 -333127 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 381.5-3 chr8 104487473 104488116 + 1 NA Intergenic L1M5|LINE|L1 -3329 NR_030330 693127 NR_030330 ENSG00000208032 MIR548A3 MIRN548A3 microRNA 548a-3 ncRNA 275.5 chr1 79211735 79212333 + 1 NA Intergenic L2c|LINE|L2 -205304 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 197.5-54 chr6 146984124 146984389 + 1 NA intron (NR_034115, intron 6 of 10) intron (NR_034115, intron 6 of 10) -174669 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 360.5 chr3 121145340 121146030 + 1 NA intron (NR_145517, intron 7 of 8) L1ME3|LINE|L1 96045 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 312.5-9 chr8 89203232 89203996 + 1 NA Intergenic Intergenic 554097 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 156.5-75 chr4 59828954 59829147 + 1 NA Intergenic L1ME3|LINE|L1 815477 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 147.25-98 chr8 98795526 98795720 + 1 NA intron (NM_001256312, intron 3 of 12) L1P4|LINE|L1 30048 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 292.75-4 chr18 12314043 12314612 + 1 NA intron (NM_001303525, intron 3 of 3) intron (NM_001303525, intron 3 of 3) 6086 NM_001303526 84617 Hs.193491 NM_032525 ENSG00000176014 TUBB6 FPVEPD|HsT1601|TUBB-5 tubulin beta 6 class V protein-coding 150.25-79 chr5 26975374 26975657 + 1 NA intron (NM_016279, intron 2 of 11) intron (NM_016279, intron 2 of 11) 63071 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 239.25-22 chr5 90789271 90789714 + 1 NA intron (NR_003149, intron 68 of 89) intron (NR_003149, intron 68 of 89) 230695 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 177.25-4 chr1 118409751 118409968 + 1 NA Intergenic MER97b|DNA|hAT-Tip100 -224631 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 366.5-6 chr4 73565999 73566431 + 1 NA Intergenic L1MA3|LINE|L1 54221 NM_001270391 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 344.25-4 chr2 78368734 78369292 + 1 NA Intergenic Charlie25|DNA|hAT-Charlie -78282 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 369.75-2 chr11 23265830 23266465 + 1 NA Intergenic Intergenic 153043 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 208.5-60 chr8 126931940 126932292 + 1 NA Intergenic Intergenic -81038 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 221.5-22 chr17 65399280 65399576 + 1 NA Intergenic Intergenic -58113 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 242.75-23 chr4 36607264 36607805 + 1 NA intron (NR_149124, intron 2 of 4) intron (NR_149124, intron 2 of 4) 34366 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 250.5-10 chr16 4777059 4777534 + 1 NA TTS (NM_001154458) TTS (NM_001154458) -10134 NM_001303450 26048 Hs.513316 NM_021646 ENSG00000103199 ZNF500 ZKSCAN18|ZSCAN50 zinc finger protein 500 protein-coding 182.5-49 chr4 64999078 64999438 + 1 NA intron (NR_033976, intron 1 of 6) intron (NR_033976, intron 1 of 6) 5242 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 311.25-6 chr2 217131347 217132224 + 1 NA Intergenic L1MB8|LINE|L1 -150948 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 373.25-2 chr14 88615919 88616459 + 1 NA exon (NM_183387, exon 42 of 43) exon (NM_183387, exon 42 of 43) 21769 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 229.25-22 chr5 107792544 107793080 + 1 NA Intergenic Intergenic -121875 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 242.5-40 chr8 112513998 112514301 + 1 NA intron (NM_001363185, intron 26 of 66) FLAM_A|SINE|Alu -129344 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 232.25-32 chr8 104424317 104424768 + 1 NA intron (NM_001385, intron 6 of 9) intron (NM_001385, intron 6 of 9) 42513 NM_001385 1807 Hs.443161 NM_001385 ENSG00000147647 DPYS DHP|DHPase dihydropyrimidinase protein-coding 242.5-12 chr18 45520238 45520549 + 1 NA intron (NM_001371319, intron 5 of 23) intron (NM_001371319, intron 5 of 23) -13357 NR_110899 101927980 Hs.591058 NR_110899 SLC14A2-AS1 - SLC14A2 antisense RNA 1 ncRNA 241.5-29 chr7 5550873 5551237 + 1 NA Intergenic L2b|LINE|L2 -20454 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 277.5-2 chr10 76899946 76900376 + 1 NA intron (NM_001271519, intron 26 of 28) intron (NM_001271519, intron 26 of 28) 12117 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 360.75-4 chr2 44540679 44541104 + 1 NA intron (NM_024766, intron 3 of 10) L1M5|LINE|L1 178944 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 218.75-19 chr4 92604808 92605265 + 1 NA intron (NM_001286838, intron 2 of 14) THE1D|LTR|ERVL-MaLR 300637 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 203.25-48 chrX 93140401 93140785 + 1 NA Intergenic L1M4|LINE|L1 -315690 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 284.75-6 chr20 13481431 13482032 + 1 NA intron (NM_017714, intron 11 of 13) L1MA2|LINE|L1 157201 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 253.5-11 chr2 35705507 35706079 + 1 NA Intergenic Intergenic 234388 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 164.5-82 chr6 124116828 124117083 + 1 NA intron (NM_001040214, intron 1 of 6) intron (NM_001040214, intron 1 of 6) -166050 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 228.5-8 chr10 57812403 57812818 + 1 NA Intergenic Intergenic 455284 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 180.75-39 chr21 44994572 44994889 + 1 NA promoter-TSS (NR_033840) promoter-TSS (NR_033840) -644 NR_033840 727699 Hs.397403 NR_033840 ENSG00000234880 LINC00163 C21orf134|NCRNA00163|NLC1-A|NLC1A long intergenic non-protein coding RNA 163 ncRNA 227.5-10 chr2 33226487 33226909 + 1 NA intron (NM_206943, intron 9 of 33) MER66D|LTR|ERV1 92101 NM_001166266 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 189.5-15 chr12 57422293 57422612 + 1 NA intron (NM_001351204, intron 1 of 25) intron (NM_001351204, intron 1 of 25) 8591 NM_001351211 22864 Hs.443673 NM_014925 ENSG00000179912 R3HDM2 CAG6|PR01365 R3H domain containing 2 protein-coding 265.5-24 chr8 121784489 121784838 + 1 NA Intergenic Intergenic -143223 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 221.5-32 chr21 30257852 30258215 + 1 NA Intergenic Intergenic 24917 NM_001085455 643803 Hs.580883 NM_001085455 ENSG00000188694 KRTAP24-1 KAP24.1 keratin associated protein 24-1 protein-coding 254.5-6 chr14 62704853 62705152 + 1 NA 3' UTR (NM_172375, exon 10 of 10) 3' UTR (NM_172375, exon 10 of 10) 340456 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 383.5-2 chr16 53672778 53673329 + 1 NA intron (NM_001127897, intron 7 of 24) intron (NM_001127897, intron 7 of 24) 30806 NM_015272 23322 Hs.298382 NM_015272 ENSG00000103494 RPGRIP1L CORS3|FTM|JBTS7|MKS5|NPHP8|PPP1R134 RPGRIP1 like protein-coding 194.75-54 chrX 106346778 106347066 + 1 NA Intergenic Intergenic 178617 NM_001171020 139221 Hs.592221 NM_152423 ENSG00000157502 PWWP3B MUM1L1 PWWP domain containing 3B protein-coding 289.25-19 chr8 112925573 112925986 + 1 NA intron (NM_001363185, intron 7 of 66) intron (NM_001363185, intron 7 of 66) 282286 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 209.75-4 chr10 108287213 108287586 + 1 NA Intergenic L1M3d|LINE|L1 -218106 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 169.5-84 chr7 12870699 12871139 + 1 NA Intergenic L1M5|LINE|L1 183286 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 261.75-12 chr20 54094287 54094918 + 1 NA Intergenic Intergenic -23837 NM_003657 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 155.75-11 chr1 244514318 244514640 + 1 NA intron (NM_001130957, intron 7 of 21) L1MD2|LINE|L1 53108 NM_001242340 257044 Hs.459534 NM_173807 ENSG00000179397 CATSPERE C10orf101|C1orf101 catsper channel auxiliary subunit epsilon protein-coding 178.25-6 chr10 26052097 26052530 + 1 NA intron (NM_017433, intron 10 of 34) intron (NM_017433, intron 10 of 34) 118084 NM_017433 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 365.25-8 chr9 72722945 72723615 + 1 NA intron (NM_138691, intron 8 of 23) intron (NM_138691, intron 8 of 23) 150829 NR_121180 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 170.75-4 chr10 25647438 25647680 + 1 NA Intergenic Intergenic -4153 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 223.5-27 chr3 69510967 69511581 + 1 NA Intergenic Intergenic -125186 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 284.25-3 chr14 72668795 72669464 + 1 NA intron (NM_001280544, intron 9 of 9) intron (NM_001280544, intron 9 of 9) 152309 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 218.5-7 chr11 112110776 112111050 + 1 NA Intergenic L1M2|LINE|L1 24040 NM_001276504 6392 Hs.356270 NM_003002 ENSG00000204370 SDHD CBT1|CII-4|CWS3|PGL|PGL1|QPs3|SDH4|cybS succinate dehydrogenase complex subunit D protein-coding 294.5-2 chr12 132971146 132971830 + 1 NA Intergenic MLT1A1|LTR|ERVL-MaLR -14879 NM_001330514 7574 Hs.489608 NM_019591 ENSG00000198393 ZNF26 HEL-179|KOX20 zinc finger protein 26 protein-coding 211.5-46 chr8 90153538 90153978 + 1 NA Intergenic L1ME3|LINE|L1 -67730 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 160.5-74 chr4 98401244 98401510 + 1 NA intron (NM_021159, intron 6 of 14) intron (NM_021159, intron 6 of 14) 139993 NM_001100426 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 188.75-59 chr7 54784958 54785187 + 1 NA intron (NR_110040, intron 2 of 2) MIR|SINE|MIR 25759 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 269.75-6 chr2 122249366 122249756 + 1 NA Intergenic Intergenic 493910 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 191.75-18 chr11 115961017 115961252 + 1 NA Intergenic Intergenic -200934 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 243.75-14 chr5 5469132 5469457 + 1 NA intron (NM_015325, intron 15 of 18) intron (NM_015325, intron 15 of 18) 46617 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 294.25-13 chr4 133421841 133422293 + 1 NA Intergenic Intergenic 272773 NM_020815 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 242.75 chr1 12223855 12224367 + 1 NA Intergenic AluSc5|SINE|Alu -5919 NM_015378 55187 Hs.439381 NM_015378 ENSG00000048707 VPS13D SCAR4 vacuolar protein sorting 13 homolog D protein-coding 190.75-19 chr11 132395442 132395679 + 1 NA Intergenic ERVL-E-int|LTR|ERVL 111258 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 149.25-69 chr3 189353706 189354026 + 1 NA Intergenic L2c|LINE|L2 -113272 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 240.5 chr1 107801777 107802237 + 1 NA intron (NM_006113, intron 2 of 26) L1MA4|LINE|L1 -95216 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 203.25-37 chr6 139752552 139752908 + 1 NA Intergenic Intergenic -18343 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 207.25-35 chr20 56040190 56040658 + 1 NA Intergenic L2a|LINE|L2 -34905 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 446.5 chr2 11990158 11991040 + 1 NA Intergenic L2c|LINE|L2 -16517 NR_110197 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 261.25-16 chr7 73549814 73550236 + 1 NA intron (NM_001707, intron 2 of 5) L1ME3B|LINE|L1 7211 NR_036682 9275 Hs.647051 NM_001707 ENSG00000106635 BCL7B - BAF chromatin remodeling complex subunit BCL7B protein-coding 161.5-36 chr15 36310443 36310700 + 1 NA Intergenic Intergenic -269055 NM_001321758 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 262.75-13 chr2 115252547 115252938 + 1 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -56495 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 205.25-4 chr1 191503329 191503629 + 1 NA Intergenic Intergenic -274981 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 281.25-12 chr4 113122355 113122770 + 1 NA intron (NM_001354237, intron 1 of 46) intron (NM_001354237, intron 1 of 46) 5865 NM_001354230 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 223.5-14 chr12 13481037 13481349 + 1 NA Intergenic Intergenic -104448 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 240.25-26 chr7 102264849 102265190 + 1 NA intron (NM_001913, intron 14 of 22) intron (NM_001913, intron 14 of 22) -20122 NM_020979 10603 Hs.489448 NM_020979 ENSG00000160999 SH2B2 APS SH2B adaptor protein 2 protein-coding 354.75-9 chr5 147605245 147605782 + 1 NA intron (NM_001282282, intron 19 of 20) L1PA7|LINE|L1 45519 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 244.75-18 chr5 137479281 137479578 + 1 NA intron (NM_004598, intron 2 of 10) intron (NM_004598, intron 2 of 10) 19897 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 509.5 chr6 64491260 64492222 + 1 NA intron (NM_001292009, intron 26 of 43) MIR|SINE|MIR 684905 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 245.5-9 chr10 94293366 94293789 + 1 NA exon (NM_016341, exon 23 of 33) exon (NM_016341, exon 23 of 33) -6507 NR_033969 100128054 Hs.677562 NR_033969 ENSG00000268894 PLCE1-AS1 - PLCE1 antisense RNA 1 ncRNA 223.75-10 chr17 48985321 48985608 + 1 NA Intergenic Charlie19a|DNA|hAT-Charlie -11921 NM_001160423 10642 Hs.144936 NM_006546 ENSG00000159217 IGF2BP1 CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1 insulin like growth factor 2 mRNA binding protein 1 protein-coding 191.5-54 chr6 138203105 138203443 + 1 NA intron (NM_020340, intron 2 of 33) MIRb|SINE|MIR 15216 NM_021635 59351 Hs.302016 NM_021635 ENSG00000254440 PBOV1 UC28|UROC28|dJ171N11.2 prostate and breast cancer overexpressed 1 protein-coding 180.5-17 chr14 48005095 48005315 + 1 NA Intergenic L1ME3B|LINE|L1 -210191 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 217.75-3 chr1 191988751 191989030 + 1 NA Intergenic L1MA1|LINE|L1 -169572 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 305.5-6 chr2 155285978 155286527 + 1 NA Intergenic Intergenic 587557 NM_002239 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 348.75-8 chr5 6268888 6269524 + 1 NA Intergenic Intergenic 68086 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 283.5-12 chr4 96660564 96661098 + 1 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 350128 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 362.5-3 chr3 75910493 75910937 + 1 NA Intergenic Intergenic -125166 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 146.75-123 chr8 136559140 136559417 + 1 NA intron (NR_147196, intron 2 of 5) MLT1K|LTR|ERVL-MaLR 28480 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 251.75-2 chr10 17558345 17558644 + 1 NA Intergenic MSTC|LTR|ERVL-MaLR 58880 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 179.5-83 chr9 27925203 27925461 + 1 NA Intergenic L1ME4c|LINE|L1 -351466 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 151.25-39 chr2 59093798 59094083 + 1 NA Intergenic Intergenic -123768 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 305.25-3 chr2 80949015 80949407 + 1 NA Intergenic Intergenic 517735 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 189.5-38 chr21 28562139 28562432 + 1 NA Intergenic L1PA16|LINE|L1 22967 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 246.25-33 chr5 159133734 159134212 + 1 NA Intergenic L1PB4|LINE|L1 33490 NR_109890 101927740 Hs.738721 NR_109890 ENSG00000245812 LINC02202 - long intergenic non-protein coding RNA 2202 ncRNA 219.25-35 chr4 37278850 37279423 + 1 NA intron (NM_001144990, intron 1 of 6) intron (NM_001144990, intron 1 of 6) 34393 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 310.25-5 chr4 61774453 61775009 + 1 NA intron (NM_001371343, intron 8 of 23) MER44A|DNA|TcMar-Tigger 387034 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 362.25-2 chr11 26214245 26214886 + 1 NA intron (NM_001313726, intron 1 of 27) intron (NM_001313726, intron 1 of 27) 25442 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 184.25 chr1 58713404 58713590 + 1 NA Intergenic AluSx|SINE|Alu -13435 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB|BMFS4 Myb like, SWIRM and MPN domains 1 protein-coding 247.25-12 chr20 63209771 63210198 + 1 NA intron (NM_017798, intron 3 of 4) Tigger3b|DNA|TcMar-Tigger 6147 NM_017798 54915 Hs.744852 NM_017798 ENSG00000149658 YTHDF1 C20orf21 YTH N6-methyladenosine RNA binding protein 1 protein-coding 195.25-38 chr3 119263465 119263666 + 1 NA intron (NR_046574, intron 3 of 3) L1MEc|LINE|L1 -22687 NM_212543 8702 Hs.13225 NM_003778 ENSG00000121578 B4GALT4 B4Gal-T4|beta4Gal-T4 beta-1,4-galactosyltransferase 4 protein-coding 227.5-29 chr7 45671621 45671945 + 1 NA intron (NM_021116, intron 8 of 19) L1MD1|LINE|L1 97235 NR_024271 641977 Hs.723477 NR_024271 ENSG00000214765 SEPTIN7P2 SEPT13|SEPT7B|SEPT7P2 septin 7 pseudogene 2 pseudo 222.5-13 chr12 54499905 54500209 + 1 NA intron (NM_001184976, intron 2 of 30) intron (NM_001184976, intron 2 of 30) 1279 NM_001184976 3071 Hs.182014 NM_005337 ENSG00000123338 NCKAP1L HEM1 NCK associated protein 1 like protein-coding 300.5-3 chr11 108618103 108618662 + 1 NA Intergenic Intergenic -24614 NM_001308019 23086 Hs.28540 NM_015065 ENSG00000110723 EXPH5 SLAC2-B|SLAC2B exophilin 5 protein-coding 254.5-29 chr7 91197832 91198118 + 1 NA intron (NM_012395, intron 13 of 13) intron (NM_012395, intron 13 of 13) -66458 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 191.75-65 chr8 86508731 86509040 + 1 NA promoter-TSS (NM_016033) promoter-TSS (NM_016033) -105 NM_001286707 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 255.5-13 chr18 60743825 60744312 + 1 NA Intergenic Intergenic -371293 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 316.5 chr14 43718752 43719248 + 1 NA Intergenic L2c|LINE|L2 788283 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 300.25-2 chr1 76460131 76460594 + 1 NA intron (NM_001349109, intron 3 of 3) intron (NM_001349109, intron 3 of 3) 318905 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 302.5-15 chr9 87749373 87749871 + 1 NA Intergenic Intergenic -23293 NR_027917 392360 Hs.690450 NM_001023564 ENSG00000188029 CTSL3P CTSL3|HCTSL-s cathepsin L family member 3, pseudogene pseudo 271.75-13 chr3 90425370 90425735 + 1 NA Intergenic ALR/Alpha|Satellite|centr 1317931 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 217.75-12 chr12 87292911 87293193 + 1 NA Intergenic L1ME1|LINE|L1 -37687 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 172.75-52 chr5 41020735 41021045 + 1 NA intron (NM_173489, intron 24 of 41) L1M3|LINE|L1 50452 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 207.75-9 chr12 24028948 24029311 + 1 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -78097 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 263.25-16 chr4 35202518 35202936 + 1 NA Intergenic Intergenic -932980 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 173.25-61 chr5 58209968 58210208 + 1 NA Intergenic Intergenic -87747 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 210.5-52 chr9 75849719 75849947 + 1 NA Intergenic Intergenic -40811 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 349.5-2 chr3 110828785 110829535 + 1 NA Intergenic Intergenic 240799 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 176.25-48 chr3 105003433 105003840 + 1 NA Intergenic L1ME4a|LINE|L1 -363077 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 311.5-11 chr5 13210955 13211382 + 1 NA Intergenic Intergenic -178282 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 235.25-2 chr1 194633776 194634052 + 1 NA Intergenic L1MC3|LINE|L1 1329169 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 338.5-7 chr6 77933323 77933701 + 1 NA Intergenic Intergenic 280473 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 325.25-2 chr15 80697788 80698248 + 1 NA intron (NM_021214, intron 1 of 2) MER112|DNA|hAT-Charlie 2708 NM_021214 58489 Hs.459072 NM_021214 ENSG00000136379 ABHD17C FAM108C1 abhydrolase domain containing 17C protein-coding 179.5-13 chr11 97596570 97596822 + 1 NA Intergenic L1ME3|LINE|L1 1088271 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 192.5-36 chr3 87274503 87274734 + 1 NA intron (NM_001122757, intron 1 of 5) intron (NM_001122757, intron 1 of 5) 1966 NM_001122757 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 228.75-18 chr3 138709140 138709680 + 1 NA intron (NM_006219, intron 10 of 23) L1MC4a|LINE|L1 -1789 NM_001256045 5291 Hs.239818 NM_006219 ENSG00000051382 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding 226.75-13 chr2 57679701 57679946 + 1 NA Intergenic Intergenic -227828 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 242.25-15 chr5 6052979 6053469 + 1 NA Intergenic THE1D|LTR|ERVL-MaLR 284068 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 303.25-4 chr12 85876075 85876811 + 1 NA intron (NM_006183, intron 1 of 3) intron (NM_006183, intron 1 of 3) 2148 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 242.5-26 chr4 42804509 42804968 + 1 NA Intergenic L1MEh|LINE|L1 -88528 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 150.25-104 chr8 119760754 119761048 + 1 NA intron (NM_003184, intron 19 of 25) Tigger3b|DNA|TcMar-Tigger 71940 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 234.25-12 chr3 36146398 36146969 + 1 NA Intergenic L2b|LINE|L2 -233804 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 154.5-23 chr12 65008518 65008691 + 1 NA Intergenic Intergenic -16313 NR_146276 109729131 Hs.577553 NR_146276 ENSG00000248995 LINC02231 - long intergenic non-protein coding RNA 2231 ncRNA 156.5-60 chr20 53711525 53711764 + 1 NA Intergenic Intergenic 103290 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 187.5-23 chr17 16303896 16304199 + 1 NA intron (NM_004278, intron 3 of 6) intron (NM_004278, intron 3 of 6) 22033 NR_031698 100302124 NR_031698 ENSG00000221355 MIR1288 MIRN1288|hsa-mir-1288 microRNA 1288 ncRNA 271.25-5 chr12 63297043 63297367 + 1 NA Intergenic L1MC5|LINE|L1 -144395 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 281.25-15 chr8 107928056 107928675 + 1 NA intron (NM_001282863, intron 4 of 4) intron (NM_001282863, intron 4 of 4) 153574 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 224.25-8 chr12 125203202 125203490 + 1 NA intron (NM_001366854, intron 1 of 8) intron (NM_001366854, intron 1 of 8) 16960 NM_001366854 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 162.25-102 chr9 36447598 36447895 + 1 NA Intergenic Intergenic -46548 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 322.25-5 chr4 30659158 30659803 + 1 NA Intergenic Intergenic -60889 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 256.75-4 chr11 48193281 48193593 + 1 NA Intergenic L1M4a2|LINE|L1 -23373 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 304.25-3 chr12 384397 384844 + 1 NA intron (NM_001042603, intron 2 of 27) intron (NM_001042603, intron 2 of 27) 4700 NM_001042603 5927 Hs.76272 NM_005056 ENSG00000073614 KDM5A RBBP-2|RBBP2|RBP2 lysine demethylase 5A protein-coding 287.25-16 chr9 28985774 28986114 + 1 NA intron (NM_001354574, intron 1 of 5) L1MA7|LINE|L1 -96989 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 147.25-5 chr1 83812516 83812674 + 1 NA intron (NR_119374, intron 2 of 2) intron (NR_119374, intron 2 of 2) 47951 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 221.5-36 chr3 123585986 123586256 + 1 NA intron (NR_121654, intron 2 of 3) intron (NR_121654, intron 2 of 3) 608 NR_038266 100506826 Hs.556600 NR_038266 ENSG00000239523 MYLK-AS1 - MYLK antisense RNA 1 ncRNA 232.5-44 chr6 65730371 65730948 + 1 NA Intergenic Intergenic -23433 NM_001142801 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 307.25-4 chr2 127242113 127242623 + 1 NA Intergenic MSTC|LTR|ERVL-MaLR -22069 NM_001367501 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 211.5-17 chr14 71133958 71134216 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -186389 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 200.75-49 chr7 48750734 48751019 + 1 NA Intergenic Intergenic -173671 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 159.25-10 chr11 78247360 78247540 + 1 NA intron (NM_012296, intron 3 of 9) L1M4a1|LINE|L1 58531 NM_020798 57558 Hs.531249 NM_020798 ENSG00000118369 USP35 - ubiquitin specific peptidase 35 protein-coding 198.25-26 chr20 51044384 51044644 + 1 NA Intergenic Tigger3c|DNA|TcMar-Tigger -21407 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 279.75-15 chr7 8559153 8559754 + 1 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 125844 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 150.75-41 chr2 172218567 172218744 + 1 NA Intergenic L1MB7|LINE|L1 115649 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 175.75-19 chr15 60469276 60469627 + 1 NA intron (NM_024611, intron 3 of 15) L1PA10|LINE|L1 9691 NM_001018089 79664 Hs.200943 NM_024611 ENSG00000128915 ICE2 BRCC1|NARG2 interactor of little elongation complex ELL subunit 2 protein-coding 192.5-24 chr2 61894271 61894635 + 1 NA intron (NM_001321781, intron 1 of 2) intron (NM_001321781, intron 1 of 2) 5730 NM_001321781 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 230.75-28 chr3 106732911 106733311 + 1 NA Intergenic Intergenic 507527 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 163.5-11 chr1 215312410 215312725 + 1 NA Intergenic L1ME1|LINE|L1 229830 NM_014217 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 334.75-9 chr7 54275591 54276222 + 1 NA Intergenic MIR|SINE|MIR -54791 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 411.5 chr3 21467266 21468044 + 1 NA intron (NM_024697, intron 4 of 7) MamRTE1|LINE|RTE-BovB 61929 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 234.5-6 chr14 56822336 56822650 + 1 NA intron (NR_146411, intron 2 of 2) MER20|DNA|hAT-Charlie 9335 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 176.75-33 chr2 37448269 37448777 + 1 NA Intergenic L1ME4a|LINE|L1 103893 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 147.5-87 chr6 68448791 68449070 + 1 NA Intergenic Intergenic -119031 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 237.5-4 chr11 113976234 113976525 + 1 NA intron (NM_213621, intron 1 of 7) intron (NM_213621, intron 1 of 7) -1121 NM_001161772 3359 Hs.413899 NM_000869 ENSG00000166736 HTR3A 5-HT-3|5-HT3A|5-HT3R|5HT3R|HTR3 5-hydroxytryptamine receptor 3A protein-coding 278.5-11 chr3 182306352 182306651 + 1 NA Intergenic Intergenic 179861 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 166.25-51 chr5 7798961 7799181 + 1 NA intron (NM_020546, intron 20 of 24) LTR78|LTR|ERV1 52062 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 289.25-4 chr17 68571310 68571726 + 1 NA intron (NM_017565, intron 1 of 10) intron (NM_017565, intron 1 of 10) -13091 NR_027751 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 349.75-5 chr3 123086930 123087488 + 1 NA intron (NM_006810, intron 1 of 16) FLAM_A|SINE|Alu 20184 NM_006810 10954 Hs.477352 NM_006810 ENSG00000065485 PDIA5 PDIR protein disulfide isomerase family A member 5 protein-coding 269.75-7 chr3 22287169 22287662 + 1 NA Intergenic L1M3de|LINE|L1 330276 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 266.75 chr1 102274636 102275017 + 1 NA Intergenic L1MB7|LINE|L1 -277592 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 180.5-18 chr14 71028498 71028831 + 1 NA intron (NM_014982, intron 15 of 35) intron (NM_014982, intron 15 of 35) 121205 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 212.5-4 chr10 9747650 9748118 + 1 NA Intergenic Intergenic -310838 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 370.25-2 chr5 25537924 25538446 + 1 NA Intergenic Intergenic 347232 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 284.25-7 chr5 161518041 161518550 + 1 NA intron (NM_000813, intron 4 of 9) intron (NM_000813, intron 4 of 9) 29829 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 203.5-32 chr20 45035690 45036052 + 1 NA intron (NM_006282, intron 10 of 10) intron (NM_006282, intron 10 of 10) 65256 NM_001322799 3787 Hs.117780 NM_002251 ENSG00000124134 KCNS1 Kv9.1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding 263.25-10 chr17 66775990 66776279 + 1 NA intron (NM_002737, intron 14 of 16) L2a|LINE|L2 -10938 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 162.75-89 chr8 135444052 135444461 + 1 NA Intergenic Intergenic -13200 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 198.25-61 chrX 122966193 122966559 + 1 NA Intergenic Intergenic -217867 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 253.75-3 chr1 232507355 232507643 + 1 NA intron (NM_020808, intron 1 of 20) L1MC3|LINE|L1 8109 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 358.75 chr3 130666161 130666866 + 1 NA intron (NM_001102608, intron 35 of 35) intron (NM_001102608, intron 35 of 35) 80316 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 156.75-25 chr12 16137733 16137959 + 1 NA Intergenic Intergenic 139839 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 322.5 chr10 11477720 11478181 + 1 NA intron (NM_014688, intron 14 of 14) intron (NM_014688, intron 14 of 14) 54330 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 185.25-34 chr18 42048201 42048567 + 1 NA intron (NM_001308020, intron 19 of 23) intron (NM_001308020, intron 19 of 23) 93150 NM_002647 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 159.5-83 chr6 64811471 64811679 + 1 NA intron (NM_001292009, intron 22 of 43) MSTB2|LTR|ERVL-MaLR -489843 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 149.25-70 chr3 191730036 191730203 + 1 NA Intergenic Intergenic 268956 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 185.75-94 chrX 95021380 95021777 + 1 NA Intergenic L1MA9|LINE|L1 41648 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 328.75-3 chr5 3462038 3462779 + 1 NA TTS (NR_147000) TTS (NR_147000) 9592 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 202.5-24 chr18 12827750 12828062 + 1 NA intron (NM_080423, intron 4 of 8) HAL1M8|LINE|L1 13056 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 285.75-3 chr2 181808073 181808484 + 1 NA Intergenic L1ME4a|LINE|L1 -83452 NR_109843 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 278.5-10 chr3 159954510 159954887 + 1 NA intron (NR_108088, intron 9 of 9) MLT1F|LTR|ERVL-MaLR -34137 NM_000882 3592 Hs.673 NM_000882 ENSG00000168811 IL12A CLMF|IL-12A|NFSK|NKSF1|P35 interleukin 12A protein-coding 238.75-14 chr2 48187657 48188272 + 1 NA Intergenic MER4D1|LTR|ERV1 -126718 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 228.5-4 chr1 118730155 118730430 + 1 NA Intergenic L1MA10|LINE|L1 258051 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 231.25-37 chr8 84499957 84500205 + 1 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 84597 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 284.25-9 chr8 89090066 89090731 + 1 NA Intergenic Intergenic 667313 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 208.75-28 chr5 78756595 78756923 + 1 NA Intergenic Intergenic -107987 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 162.5-48 chr20 35520851 35521141 + 1 NA non-coding (NR_026933, exon 11 of 11) non-coding (NR_026933, exon 11 of 11) 8656 NR_026933 140873 Hs.158680 NM_080828 ENSG00000125975 C20orf173 dJ477O4.4 chromosome 20 open reading frame 173 protein-coding 153.75-63 chr5 57251243 57251440 + 1 NA intron (NM_001203246, intron 9 of 10) L1MB8|LINE|L1 37267 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 334.5-6 chr7 138013454 138013986 + 1 NA Intergenic LOR1-int|LTR|ERV1 -11634 NM_194071 64764 Hs.490273 NM_194071 ENSG00000182158 CREB3L2 BBF2H7 cAMP responsive element binding protein 3 like 2 protein-coding 164.5-7 chr10 81803235 81803426 + 1 NA Intergenic AluY|SINE|Alu -71864 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 171.75-97 chr9 132683658 132684002 + 1 NA intron (NR_133925, intron 4 of 5) intron (NR_133925, intron 4 of 5) 13366 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 151.5-71 chr3 163181719 163181956 + 1 NA intron (NR_033945, intron 6 of 6) intron (NR_033945, intron 6 of 6) 121464 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 169.5-56 chr3 86841943 86842238 + 1 NA Intergenic Intergenic 149059 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 159.75-24 chr12 10332328 10332717 + 1 NA TTS (NR_159946) TTS (NR_159946) 5770 NR_159946 113523642 Hs.539490 NR_159946 LINC02617 - long intergenic non-protein coding RNA 2617 ncRNA 196.75-10 chr11 23945581 23945900 + 1 NA Intergenic L1MEc|LINE|L1 -526550 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 183.75-68 chr5 7385068 7385442 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -10883 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 202.5-32 chr2 161433502 161433884 + 1 NA Intergenic MER112|DNA|hAT-Charlie 17396 NM_006593 10716 Hs.210862 NM_006593 ENSG00000136535 TBR1 IDDAS|TBR-1|TES-56 T-box brain transcription factor 1 protein-coding 267.5-26 chr8 112929848 112930172 + 1 NA intron (NM_001363185, intron 7 of 66) intron (NM_001363185, intron 7 of 66) 286517 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 311.25-8 chr4 31695849 31696408 + 1 NA Intergenic L1MA9|LINE|L1 189584 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 229.5-5 chr11 82480764 82481083 + 1 NA Intergenic L1ME3A|LINE|L1 -77010 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 238.5-24 chr3 63790812 63791280 + 1 NA Intergenic LTR16A2|LTR|ERVL -28253 NM_001355236 132200 Hs.506386 NM_001355236 ENSG00000163632 C3orf49 - chromosome 3 open reading frame 49 protein-coding 213.5-18 chr14 61214477 61214881 + 1 NA Intergenic Intergenic 66659 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 210.5-48 chr8 117138750 117139035 + 1 NA intron (NM_173851, intron 1 of 7) L1M4b|LINE|L1 3897 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 359.5-4 chr4 60912156 60912747 + 1 NA Intergenic Intergenic -10168 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 237.75-4 chr10 52525394 52525962 + 1 NA Intergenic MIRb|SINE|MIR -55145 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 244.25-9 chr15 86503270 86503536 + 1 NA intron (NM_152336, intron 18 of 24) L1MB7|LINE|L1 -186435 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 272.5-8 chr2 164410528 164410886 + 1 NA Intergenic Charlie17a|DNA|hAT-Charlie 157788 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 162.5-68 chr4 179449770 179449953 + 1 NA Intergenic Intergenic -1541925 NR_108093 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 247.5-22 chr20 24009086 24009536 + 1 NA Intergenic L2a|LINE|L2 -20532 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 218.5-33 chr5 31638577 31638815 + 1 NA promoter-TSS (NM_178140) promoter-TSS (NM_178140) -435 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 239.25-9 chr14 60607967 60608308 + 1 NA Intergenic Intergenic -31079 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 178.25-67 chr7 129329533 129329940 + 1 NA intron (NM_001130720, intron 1 of 16) MIRb|SINE|MIR -38644 NM_001130723 23382 Hs.600789 NM_015328 ENSG00000158467 AHCYL2 ADOHCYASE3|IRBIT2 adenosylhomocysteinase like 2 protein-coding 303.5-9 chr2 119356879 119357247 + 1 NA intron (NM_001322329, intron 1 of 6) L1MC|LINE|L1 9679 NM_001322330 130355 Hs.99488 NM_001017927 ENSG00000186132 C2orf76 AIM29 chromosome 2 open reading frame 76 protein-coding 166.5-43 chr20 32195645 32195877 + 1 NA 3' UTR (NM_002657, exon 3 of 3) 3' UTR (NM_002657, exon 3 of 3) -5401 NR_002781 128854 Hs.647447 NR_002781 ENSG00000235217 TSPY26P TSPYL3|bA392M18.1 testis specific protein Y-linked 26, pseudogene pseudo 252.75 chr1 28066074 28066864 + 1 NA intron (NM_001282562, intron 1 of 16) intron (NM_001282562, intron 1 of 16) 22141 NM_001282560 2140 Hs.185774 NM_001990 ENSG00000158161 EYA3 - EYA transcriptional coactivator and phosphatase 3 protein-coding 477.5-2 chr3 3194029 3194875 + 1 NA Intergenic Intergenic -14735 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 213.25-37 chr5 82027841 82028077 + 1 NA intron (NM_031482, intron 2 of 7) Charlie17|DNA|hAT-Charlie 55936 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 206.25-21 chr2 204557774 204558141 + 1 NA intron (NM_205863, intron 1 of 21) intron (NM_205863, intron 1 of 21) 12482 NM_205863 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 247.5-25 chr4 54706047 54706483 + 1 NA intron (NM_000222, intron 5 of 20) L1ME4c|LINE|L1 48337 NM_001093772 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 160.75-20 chr11 86126341 86126590 + 1 NA Intergenic (T)n|Simple_repeat|Simple_repeat -56605 NM_001206947 8301 Hs.163893 NM_007166 ENSG00000073921 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 232.75-16 chr20 943592 944009 + 1 NA Intergenic MER4D|LTR|ERV1 -27466 NM_001322809 51378 Hs.278973 NM_015985 ENSG00000101280 ANGPT4 ANG3|ANG4 angiopoietin 4 protein-coding 438.25-2 chr10 115286340 115286981 + 1 NA intron (NM_207303, intron 15 of 28) intron (NM_207303, intron 15 of 28) 193295 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 171.5-24 chr13 46638089 46638337 + 1 NA intron (NM_001164213, intron 1 of 18) intron (NM_001164213, intron 1 of 18) 85043 NM_015116 23143 Hs.507971 NM_015116 ENSG00000136141 LRCH1 CHDC1|NP81 leucine rich repeats and calponin homology domain containing 1 protein-coding 222.25-23 chr20 59296404 59296850 + 1 NA Intergenic Intergenic -3984 NM_207033 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 191.75-52 chr6 9953287 9953639 + 1 NA Intergenic L1PA13|LINE|L1 -451039 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 267.25-14 chr8 58783033 58783568 + 1 NA Intergenic Intergenic -123447 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 155.5-38 chr16 57353331 57353612 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -5312 NM_002990 6367 Hs.534347 NM_002990 ENSG00000102962 CCL22 A-152E5.1|ABCD-1|DC/B-CK|MDC|SCYA22|STCP-1 C-C motif chemokine ligand 22 protein-coding 182.25-12 chr14 56257847 56258042 + 1 NA intron (NM_021255, intron 2 of 5) L1ME1|LINE|L1 139533 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 203.5-21 chr18 2563649 2563984 + 1 NA exon (NM_001308401, exon 3 of 8) exon (NM_001308401, exon 3 of 8) 7689 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 235.5-31 chr6 135705526 135706025 + 1 NA intron (NR_152842, intron 5 of 5) intron (NR_152842, intron 5 of 5) -145926 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 193.5-29 chr17 15969936 15970215 + 1 NA intron (NM_000676, intron 1 of 1) L2c|LINE|L2 25158 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 189.5-36 chr2 180704078 180704424 + 1 NA intron (NR_104323, intron 1 of 5) L1M2|LINE|L1 12147 NR_104321 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 176.75-41 chr2 221012992 221013332 + 1 NA Intergenic Intergenic 559142 NM_004438 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 368.25 chr11 23543195 23543656 + 1 NA Intergenic MIRb|SINE|MIR -124235 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 246.5-30 chrX 31306692 31307163 + 1 NA intron (NM_000109, intron 62 of 78) intron (NM_000109, intron 62 of 78) -39973 NM_004015 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 227.25-6 chr11 39592563 39592794 + 1 NA Intergenic Intergenic 700452 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 204.5-47 chr9 68516152 68516385 + 1 NA intron (NM_021965, intron 10 of 10) intron (NM_021965, intron 10 of 10) 24599 NM_153237 169693 Hs.663056 NM_153237 ENSG00000181778 TMEM252 C9orf71 transmembrane protein 252 protein-coding 148.25-55 chr22 35286988 35287316 + 1 NA intron (NM_001003681, intron 7 of 10) intron (NM_001003681, intron 7 of 10) -12123 NM_001135729 10043 Hs.474705 NM_005488 ENSG00000100284 TOM1 - target of myb1 membrane trafficking protein protein-coding 329.5-5 chr22 28304997 28305680 + 1 NA intron (NM_001145418, intron 3 of 22) intron (NM_001145418, intron 3 of 22) -154531 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 182.5-54 chr5 25579080 25579330 + 1 NA Intergenic Intergenic 388252 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 167.5-22 chr14 47962440 47962630 + 1 NA Intergenic Intergenic -167521 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 230.5-31 chr7 37645107 37645476 + 1 NA Intergenic Intergenic -38475 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 350.25 chr15 67287936 67288326 + 1 NA intron (NM_001322475, intron 3 of 17) L1PA13|LINE|L1 -32933 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 180.5-13 chr12 42160925 42161186 + 1 NA intron (NM_005748, intron 3 of 3) intron (NM_005748, intron 3 of 3) -16181 NM_173601 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 408.5 chr2 35473146 35474076 + 1 NA Intergenic Intergenic 2206 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 265.75-18 chr8 84956067 84956550 + 1 NA Intergenic Intergenic -150930 NM_001349636 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 324.25-9 chr5 129660801 129661496 + 1 NA intron (NM_133638, intron 15 of 22) L2c|LINE|L2 -86946 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 225.75-17 chr3 62029811 62030134 + 1 NA intron (NM_002841, intron 4 of 29) intron (NM_002841, intron 4 of 29) 288975 NR_038282 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 153.25-75 chr22 49788848 49789122 + 1 NA intron (NM_001349942, intron 7 of 12) intron (NM_001349942, intron 7 of 12) 35346 NM_001349941 23774 Hs.127950 NM_014577 ENSG00000100425 BRD1 BRL|BRPF1|BRPF2 bromodomain containing 1 protein-coding 173.25-56 chr4 63154591 63154984 + 1 NA Intergenic L1PB2|LINE|L1 -993022 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 152.5-100 chr7 12063154 12063446 + 1 NA Intergenic L1MA9|LINE|L1 -147994 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 151.5-26 chr14 60360379 60360626 + 1 NA Intergenic Intergenic 37306 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 225.5-14 chr14 78367653 78367932 + 1 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -35927 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 278.75-9 chr5 116564268 116564577 + 1 NA intron (NM_001300780, intron 1 of 19) intron (NM_001300780, intron 1 of 19) -9996 NR_147170 105379132 NR_147170 SEMA6A-AS2 - SEMA6A antisense RNA 2 ncRNA 225.5-5 chr1 215742704 215743195 + 1 NA intron (NM_206933, intron 59 of 71) intron (NM_206933, intron 59 of 71) 175645 NM_016121 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 342.5-3 chr2 98431043 98431705 + 1 NA Intergenic MER9a1|LTR|ERVK -13213 NM_001351424 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 203.25-27 chr3 46353285 46353668 + 1 NA promoter-TSS (NM_001123396) promoter-TSS (NM_001123396) -268 NM_001123041 729230 Hs.511794 NM_001123041 ENSG00000121807 CCR2 CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R C-C motif chemokine receptor 2 protein-coding 194.75-52 chr8 112648440 112648825 + 1 NA intron (NM_001363185, intron 17 of 66) intron (NM_001363185, intron 17 of 66) 5139 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 202.5-6 chr10 32727279 32727545 + 1 NA intron (NM_001321115, intron 27 of 43) MER76-int|LTR|ERVL 174060 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 300.5-12 chr20 54577200 54577547 + 1 NA intron (NM_018431, intron 2 of 7) intron (NM_018431, intron 2 of 7) 101780 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 302.75-3 chr2 16429488 16430111 + 1 NA Intergenic Intergenic 236035 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 215.25-40 chr7 17645504 17645761 + 1 NA Intergenic Tigger13a|DNA|TcMar-Tigger -86723 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 297.5-7 chr16 11767185 11767580 + 1 NA intron (NM_014153, intron 13 of 22) intron (NM_014153, intron 13 of 22) -24525 NR_136673 51061 Hs.313847 NM_015914 ENSG00000153066 TXNDC11 EFP1 thioredoxin domain containing 11 protein-coding 246.5-19 chr4 66863944 66864238 + 1 NA Intergenic Intergenic 557909 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 160.5-54 chr2 169904610 169904801 + 1 NA intron (NM_172070, intron 8 of 38) intron (NM_172070, intron 8 of 38) 77197 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 249.5-6 chr11 83080620 83081018 + 1 NA Intergenic Intergenic 8753 NR_038903 100506233 Hs.503429 NR_038903 ENSG00000246067 RAB30-DT RAB30-AS1 RAB30 divergent transcript ncRNA 194.75-6 chr10 56675900 56676365 + 1 NA Intergenic Intergenic -314859 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 303.75-4 chr2 52881085 52881618 + 1 NA Intergenic Intergenic -178736 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 228.25-26 chr5 75991510 75992077 + 1 NA Intergenic Intergenic -91590 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 227.25-28 chr8 111699708 111700020 + 1 NA Intergenic MLT1A|LTR|ERVL-MaLR 323225 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 212.25-13 chr14 48437371 48437997 + 1 NA Intergenic AluY|SINE|Alu -642670 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 216.5-25 chr3 59364530 59364890 + 1 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR 293787 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 281.5-15 chr17 67125150 67125575 + 1 NA intron (NM_001330447, intron 24 of 32) intron (NM_001330447, intron 24 of 32) 80808 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 163.75-27 chr18 11378038 11378239 + 1 NA Intergenic Intergenic -76340 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 246.25-30 chr4 157478988 157479350 + 1 NA Intergenic Intergenic -93321 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 292.5 chr11 112976751 112977212 + 1 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -13521 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 288.25-5 chr2 235375438 235375841 + 1 NA Intergenic Intergenic -118404 NM_001244888 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 285.75-2 chr15 94936505 94936972 + 1 NA Intergenic Intergenic 81375 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 160.25-30 chr2 35002632 35002966 + 1 NA Intergenic Intergenic 325242 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 198.5-50 chr6 143241851 143242113 + 1 NA intron (NM_001366354, intron 3 of 4) Tigger4b|DNA|TcMar-Tigger 77200 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 266.75-7 chr14 103127778 103128083 + 1 NA intron (NM_001371220, intron 3 of 12) MIR1_Amn|SINE|MIR 1624 NM_006291 7127 Hs.525607 NM_006291 ENSG00000185215 TNFAIP2 B94|EXOC3L3 TNF alpha induced protein 2 protein-coding 222.75-15 chr16 6129873 6130127 + 1 NA intron (NM_018723, intron 1 of 15) L1MEf|LINE|L1 110297 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 166.25-42 chr3 60840460 60840839 + 1 NA intron (NM_001320900, intron 4 of 9) intron (NM_001320900, intron 4 of 9) -222779 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 186.75-33 chr15 71908348 71908708 + 1 NA intron (NM_006901, intron 19 of 41) L1MEf|LINE|L1 97974 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 265.75-6 chr18 7328604 7329004 + 1 NA Intergenic Intergenic 97700 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 277.75-19 chr8 115690490 115691063 + 1 NA Intergenic Intergenic -21801 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 267.5-13 chr4 35034908 35035493 + 1 NA Intergenic L1MB1|LINE|L1 -765453 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 446.5-2 chr2 148513800 148514638 + 1 NA TTS (NM_018328) TTS (NM_018328) -130532 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 222.5-43 chr5 23370456 23370799 + 1 NA Intergenic Intergenic -136982 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 291.25-5 chr16 62323506 62323846 + 1 NA Intergenic L1ME3A|LINE|L1 -287238 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 273.25-15 chr5 19382014 19382551 + 1 NA Intergenic Intergenic 503990 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 321.5-5 chr5 80093717 80094093 + 1 NA Intergenic Intergenic -10240 NR_109930 101929215 NR_109930 ENSG00000249825 CTD-2201I18.1 - uncharacterized LOC101929215 ncRNA 364.5-3 chr8 4552963 4553554 + 1 NA intron (NM_033225, intron 2 of 69) intron (NM_033225, intron 2 of 69) 441656 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 292.5-9 chr6 119261017 119261426 + 1 NA intron (NM_005907, intron 5 of 12) AluY|SINE|Alu 88540 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 221.5-2 chr1 60458944 60459332 + 1 NA Intergenic L1MA4A|LINE|L1 163547 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 342.25-5 chr22 34783533 34784146 + 1 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 214077 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 243.75-16 chr7 26951786 26952155 + 1 NA Intergenic AluJr|SINE|Alu -87380 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 264.5-6 chr12 107634727 107635133 + 1 NA intron (NM_001018072, intron 11 of 16) intron (NM_001018072, intron 11 of 16) -50802 NM_001317963 11137 Hs.506652 NM_007062 ENSG00000136045 PWP1 IEF-SSP-9502 PWP1 homolog, endonuclein protein-coding 439.25-2 chr4 179715283 179715892 + 1 NA Intergenic Intergenic 1443562 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 176.75-59 chr3 170909827 170910234 + 1 NA Intergenic AluJb|SINE|Alu -1393 NM_020390 56648 Hs.164144 NM_020390 ENSG00000163577 EIF5A2 EIF-5A2|eIF5AII eukaryotic translation initiation factor 5A2 protein-coding 253.75-23 chr5 108412692 108413335 + 1 NA Intergenic LTR37-int|LTR|ERV1 -30915 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 435.5-2 chr14 63709444 63710242 + 1 NA intron (NM_030791, intron 1 of 2).2 intron (NM_030791, intron 1 of 2).2 18222 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 299.5-9 chr6 69302186 69302664 + 1 NA intron (NM_001704, intron 20 of 31) Tigger2|DNA|TcMar-Tigger 494041 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 245.25-25 chr8 29788138 29788685 + 1 NA intron (NR_125815, intron 1 of 3) intron (NR_125815, intron 1 of 3) 40093 NR_125817 101929470 Hs.204721 NR_125817 ENSG00000248964 LOC101929470 - uncharacterized LOC101929470 ncRNA 146.5-108 chr8 136792888 136793142 + 1 NA intron (NR_147196, intron 3 of 5) L1MC5a|LINE|L1 262217 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 253.5-13 chr22 16807612 16808085 + 1 NA exon (NM_175878, exon 2 of 4) exon (NM_175878, exon 2 of 4) 13851 NM_001318251 150165 Hs.356069 NM_175878 ENSG00000172967 XKR3 XRG3|XTES XK related 3 protein-coding 207.5-31 chr4 80458938 80459189 + 1 NA intron (NM_152770, intron 2 of 5) AluJr|SINE|Alu 123343 NM_001206997 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 164.5-75 chr6 2620198 2620499 + 1 NA Intergenic Intergenic -14152 NR_149119 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 336.5-9 chr8 137686029 137686436 + 1 NA Intergenic L2a|LINE|L2 -272644 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 436.25 chr15 37018046 37018714 + 1 NA intron (NM_172316, intron 8 of 12) intron (NM_172316, intron 8 of 12) -45479 NR_107030 102466875 NR_107030 ENSG00000277202 MIR8063 hsa-mir-8063 microRNA 8063 ncRNA 215.25-15 chr17 61987517 61987824 + 1 NA intron (NM_005121, intron 11 of 29) intron (NM_005121, intron 11 of 29) -59688 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 199.75-58 chr8 109896148 109896456 + 1 NA Intergenic Intergenic 79469 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 271.5-9 chr2 191352110 191352526 + 1 NA intron (NM_012223, intron 7 of 28) intron (NM_012223, intron 7 of 28) 106914 NM_001330237 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 327.75-8 chr5 34761760 34762273 + 1 NA intron (NM_015577, intron 3 of 17) intron (NM_015577, intron 3 of 17) 74457 NM_001145523 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 221.75-35 chr8 136250845 136251242 + 1 NA Intergenic L1MB7|LINE|L1 -279755 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 295.75 chr1 104308404 104308699 + 1 NA Intergenic Intergenic 235528 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 170.5-79 chr8 121723098 121723365 + 1 NA Intergenic L1MEd|LINE|L1 -81791 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 274.5-19 chr8 81568803 81569310 + 1 NA Intergenic L1MA3|LINE|L1 -37666 NM_001105281 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 222.25-32 chr5 15845395 15845782 + 1 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -89594 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 301.25-4 chr14 53804263 53804738 + 1 NA Intergenic Intergenic 143984 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 186.5-52 chr4 84243703 84243939 + 1 NA intron (NR_125909, intron 4 of 8) intron (NR_125909, intron 4 of 8) 55348 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 271.75-12 chr3 42963169 42963821 + 1 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat -15816 NM_001129908 729085 Hs.729533 NM_001129908 ENSG00000144649 GASK1A C3orf41|FAM198A golgi associated kinase 1A protein-coding 322.5-9 chr20 18033984 18034607 + 1 NA intron (NM_001303461, intron 3 of 3) LTR16A1|LTR|ERVL 23621 NM_021220 58495 Hs.661013 NM_021220 ENSG00000125850 OVOL2 CHED|CHED1|CHED2|EUROIMAGE566589|PPCD1|ZNF339 ovo like zinc finger 2 protein-coding 161.5-13 chr1 235718866 235719049 + 1 NA intron (NM_000081, intron 40 of 52) L1MC5a|LINE|L1 -68203 NM_001098721 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 171.75-30 chr15 85931985 85932271 + 1 NA Intergenic Intergenic 106493 NR_049805 100847084 NR_049805 ENSG00000264406 MIR548AP - microRNA 548ap ncRNA 330.5-14 chr8 133654487 133655140 + 1 NA Intergenic Intergenic 29253 NR_134463 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 287.5-15 chr4 37250492 37250880 + 1 NA intron (NM_001144990, intron 1 of 6) intron (NM_001144990, intron 1 of 6) 5943 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 285.75-8 chr6 119548706 119549284 + 1 NA promoter-TSS (NR_134600) promoter-TSS (NR_134600) -813 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 188.5-24 chr18 12803438 12803626 + 1 NA intron (NM_080423, intron 7 of 8) L1MA6|LINE|L1 37430 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 268.75-8 chr21 25216403 25216847 + 1 NA Intergenic Intergenic 215076 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 165.75-18 chr10 36369836 36370143 + 1 NA Intergenic Intergenic 591687 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 177.5-29 chr2 106646272 106646587 + 1 NA Intergenic Intergenic 159065 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 328.5-8 chr8 75509231 75509797 + 1 NA intron (NM_001330561, intron 3 of 11) intron (NM_001330561, intron 3 of 11) -30454 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 173.5-10 chr10 35365612 35365889 + 1 NA intron (NM_001282852, intron 1 of 8) L1MC4a|LINE|L1 28876 NM_001282853 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 146.75-30 chr14 46825671 46825942 + 1 NA Intergenic Intergenic -174025 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 207.75-35 chr4 89840105 89840386 + 1 NA intron (NR_045481, intron 2 of 3) intron (NR_045481, intron 2 of 3) -1941 NM_001146055 6622 Hs.21374 NM_000345 ENSG00000145335 SNCA NACP|PARK1|PARK4|PD1 synuclein alpha protein-coding 253.75 chr1 170017946 170018425 + 1 NA intron (NM_014970, intron 9 of 19) MER58B|DNA|hAT-Charlie 50730 NM_001204517 22920 Hs.433442 NM_014970 ENSG00000075945 KIFAP3 FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1 kinesin associated protein 3 protein-coding 203.25-10 chr14 42364621 42364939 + 1 NA Intergenic Intergenic 757924 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 215.5-19 chr17 39303444 39303920 + 1 NA intron (NM_001370209, intron 2 of 13) intron (NM_001370209, intron 2 of 13) 6282 NR_162098 113839521 NR_162098 MIR548BC - microRNA 548BC ncRNA 159.5-46 chr2 198899582 198899774 + 1 NA Intergenic L1MC4|LINE|L1 -524581 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 249.75-10 chr20 12458725 12459411 + 1 NA Intergenic Charlie25|DNA|hAT-Charlie 477895 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 161.75-48 chr3 89472839 89473098 + 1 NA intron (NM_005233, intron 16 of 16) intron (NM_005233, intron 16 of 16) 365347 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 170.5-77 chr8 108613934 108614217 + 1 NA intron (NR_136411, intron 2 of 3) intron (NR_136411, intron 2 of 3) 170451 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 278.75-7 chr21 26930463 26930833 + 1 NA intron (NM_007038, intron 6 of 7) intron (NM_007038, intron 6 of 7) -23313 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 162.75-64 chr6 6135877 6136057 + 1 NA Intergenic Intergenic -33367 NR_049863 100847034 NR_049863 ENSG00000283616 MIR5683 - microRNA 5683 ncRNA 206.75-45 chr5 111496880 111497207 + 1 NA non-coding (NR_131754, exon 5 of 5) non-coding (NR_131754, exon 5 of 5) -15183 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 275.5-4 chr1 209148815 209149475 + 1 NA Intergenic Intergenic -176311 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 161.5-40 chr17 61248409 61248711 + 1 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 119144 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 200.5-46 chr4 59000944 59001353 + 1 NA intron (NR_133941, intron 1 of 2) ERVL-E-int|LTR|ERVL -12425 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 207.5-19 chr18 42496240 42496554 + 1 NA intron (NR_046174, intron 6 of 9) L1ME3D|LINE|L1 309729 NR_046458 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 373.5-2 chr14 62571192 62571956 + 1 NA Intergenic Intergenic -431601 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 355.25-2 chr11 99558560 99559083 + 1 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 2676 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 167.75-81 chr6 158752358 158752556 + 1 NA intron (NM_001242394, intron 13 of 17) intron (NM_001242394, intron 13 of 17) 12296 NR_037482 100500851 NR_037482 ENSG00000265558 MIR3918 mir-3918 microRNA 3918 ncRNA 229.5-30 chr5 62003328 62003730 + 1 NA Intergenic HAL1|LINE|L1 -267831 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 166.5-8 chr11 7247567 7247962 + 1 NA Intergenic L1PB1|LINE|L1 -4140 NM_175733 143425 Hs.177193 NM_175733 ENSG00000170743 SYT9 - synaptotagmin 9 protein-coding 373.25 chr11 26858848 26859311 + 1 NA Intergenic MIRb|SINE|MIR -135033 NM_203371 387758 Hs.712718 NM_203371 ENSG00000176971 FIBIN - fin bud initiation factor homolog protein-coding 171.5-36 chr16 79820961 79821326 + 1 NA Intergenic FRAM|SINE|Alu 25894 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 182.75-5 chr1 210973308 210973643 + 1 NA intron (NM_002238, intron 6 of 10) intron (NM_002238, intron 6 of 10) 159899 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 324.75-7 chr4 69637857 69638299 + 1 NA intron (NM_001252275, intron 2 of 6) GA-rich|Low_complexity|Low_complexity 1564 NM_001301233 574537 Hs.225950 NM_001105677 ENSG00000271271 UGT2A2 - UDP glucuronosyltransferase family 2 member A2 protein-coding 196.5-67 chrX 155250575 155250898 + 1 NA Intergenic L2c|LINE|L2 13755 NM_171998 116442 Hs.632832 NM_171998 ENSG00000155961 RAB39B BGMR|MRX72|WSMN|WSN RAB39B, member RAS oncogene family protein-coding 288.75-6 chr12 12529841 12530442 + 1 NA intron (NM_030640, intron 1 of 6).2 L1MA8|LINE|L1 32722 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 203.5-36 chr3 1037432 1037660 + 1 NA Intergenic Intergenic -55478 NM_001349359 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 222.5-37 chr4 32053566 32053809 + 1 NA intron (NR_125936, intron 1 of 2) MSTA-int|LTR|ERVL-MaLR -31265 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 286.5-11 chr5 52945932 52946409 + 1 NA intron (NM_181501, intron 27 of 28) MIR3|SINE|MIR -43182 NM_002203 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 231.75-20 chr4 46884317 46884968 + 1 NA intron (NM_130902, intron 1 of 2) intron (NM_130902, intron 1 of 2) 24603 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 244.5-13 chr16 26504004 26504489 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR 479009 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 297.25-7 chr5 90690346 90690920 + 1 NA intron (NR_003149, intron 30 of 89) intron (NR_003149, intron 30 of 89) 131836 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 260.25-22 chr5 29782751 29783090 + 1 NA Intergenic Intergenic -97640 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 191.75-69 chr9 136034066 136034317 + 1 NA intron (NM_144653, intron 2 of 5) L1ME1|LINE|L1 61098 NM_144653 138151 Hs.112895 NM_144653 ENSG00000148411 NACC2 BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB NACC family member 2 protein-coding 325.25-3 chr17 66484195 66484866 + 1 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) -67676 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 216.25-11 chr12 128528881 128529339 + 1 NA intron (NM_001136103, intron 2 of 8) intron (NM_001136103, intron 2 of 8) 235018 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 205.75-16 chr11 76644799 76645215 + 1 NA Intergenic MER21B|LTR|ERVL 24931 NR_163259 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 191.25-52 chr4 187849996 187850228 + 1 NA Intergenic Intergenic -145659 NM_001304358 132625 Hs.335787 NM_174900 ENSG00000179059 ZFP42 REX-1|REX1|ZNF754|zfp-42 ZFP42 zinc finger protein protein-coding 161.75-67 chr4 94704639 94704848 + 1 NA Intergenic Intergenic 52790 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 396.5-2 chr3 35583003 35583489 + 1 NA Intergenic L1MA2|LINE|L1 -56279 NM_001267616 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 151.25-92 chr8 106568208 106568542 + 1 NA intron (NM_018002, intron 3 of 15) intron (NM_018002, intron 3 of 15) -89433 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 210.5-49 chr8 133877010 133877282 + 1 NA Intergenic L1P2|LINE|L1 -9350 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 180.75-47 chr4 69790600 69790937 + 1 NA Intergenic FAM|SINE|Alu -30148 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 213.25-38 chr5 99447112 99447549 + 1 NA Intergenic Intergenic -86660 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 180.75-56 chr6 113201871 113202127 + 1 NA Intergenic Intergenic 231448 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 396.25-3 chr7 1970686 1971443 + 1 NA intron (NM_001013837, intron 15 of 18) intron (NM_001013837, intron 15 of 18) -30493 NM_001304525 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 162.5-58 chr3 102113739 102113975 + 1 NA Intergenic Intergenic -49848 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 177.5-57 chr8 111444596 111444845 + 1 NA intron (NR_146282, intron 2 of 3) intron (NR_146282, intron 2 of 3) 68081 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 344.25-3 chr15 92245601 92246239 + 1 NA Intergenic Intergenic -147961 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 218.25-24 chr3 3954953 3955326 + 1 NA Intergenic Intergenic -154264 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 239.75-11 chr16 83108981 83109510 + 1 NA intron (NM_001220489, intron 3 of 12) L2|LINE|L2 -118947 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 228.5-3 chr1 93953390 93953859 + 1 NA Intergenic AluSz|SINE|Alu -44026 NM_001308253 2730 Hs.315562 NM_002061 ENSG00000023909 GCLM GLCLR glutamate-cysteine ligase modifier subunit protein-coding 193.5-17 chr13 105334793 105335101 + 1 NA Intergenic Intergenic -130920 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 179.5-62 chr5 75275419 75275622 + 1 NA Intergenic Intergenic -38642 NM_001164443 256006 Hs.482533 NM_001164443 ENSG00000145700 ANKRD31 - ankyrin repeat domain 31 protein-coding 290.25 chr1 74768331 74768743 + 1 NA Intergenic Intergenic -35129 NM_001130043 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 147.75-45 chr17 58767276 58767556 + 1 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 11547 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 168.25-4 chr1 215382439 215382689 + 1 NA Intergenic L1MA2|LINE|L1 -184740 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 201.5-15 chr16 12406116 12406395 + 1 NA intron (NM_032167, intron 18 of 20) L4_B_Mam|LINE|RTE-X -314066 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 171.25-41 chr4 32372037 32372261 + 1 NA Intergenic MLT1J1|LTR|ERVL-MaLR 21111 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 190.25-37 chr5 120266963 120267258 + 1 NA Intergenic L2a|LINE|L2 -197168 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 264.75-11 chr3 172607917 172608442 + 1 NA Intergenic MLT2B4|LTR|ERVL -12572 NR_146714 105374219 Hs.186269 NR_146714 ENSG00000223387 LINC02068 - long intergenic non-protein coding RNA 2068 ncRNA 242.5-14 chr2 98769619 98770036 + 1 NA intron (NR_126337, intron 1 of 3) intron (NR_126337, intron 1 of 3) 2071 NR_126337 101927070 Hs.469395 NR_126337 LINC02611 - long intergenic non-protein coding RNA 2611 ncRNA 193.5-3 chr1 99774427 99774648 + 1 NA Intergenic L1MB3|LINE|L1 -7902 NM_001361041 391059 Hs.454779 NM_001013660 ENSG00000156869 FRRS1 SDFR2|SDR2 ferric chelate reductase 1 protein-coding 263.25-5 chr11 112981689 112982279 + 1 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -18524 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 236.5 chr1 194668900 194669447 + 1 NA Intergenic Intergenic 1364428 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 237.75-11 chr18 22118394 22118818 + 1 NA Intergenic FLAM_A|SINE|Alu 50362 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 169.5-8 chr1 189502835 189503107 + 1 NA Intergenic Intergenic 973039 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 157.5 chr1 63550514 63550682 + 1 NA TTS (NR_002771) TTS (NR_002771) 1618 NR_002771 79469 Hs.659291 NR_002771 DLEU2L BCMSUNL deleted in lymphocytic leukemia 2 like ncRNA 230.75-27 chr3 46745911 46746182 + 1 NA Intergenic AluJr|SINE|Alu -1291 NR_160553 377047 Hs.667712 NM_199183 ENSG00000188086 PRSS45P PRSS45|TESPL|TESSP5 serine protease 45, pseudogene pseudo 186.5-22 chr18 6626519 6626787 + 1 NA Intergenic Intergenic -103063 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 208.25-33 chr7 19500577 19501003 + 1 NA Intergenic L1MC4|LINE|L1 204646 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 206.25-16 chr18 25644714 25645147 + 1 NA Intergenic Intergenic -292764 NM_015461 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 238.75 chr1 42683864 42684246 + 1 NA intron (NM_004559, intron 2 of 7) intron (NM_004559, intron 2 of 7) 919 NR_132737 4904 Hs.473583 NM_004559 ENSG00000065978 YBX1 BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1 Y-box binding protein 1 protein-coding 258.75-17 chr4 80924906 80925273 + 1 NA intron (NM_152770, intron 4 of 5) intron (NM_152770, intron 4 of 5) -105619 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 232.5-23 chr2 235254568 235254966 + 1 NA Intergenic L1ME5|LINE|L1 227032 NM_001371306 204.5-36 chr5 165711131 165711666 + 1 NA Intergenic Intergenic 1214972 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 242.75-28 chr8 63929010 63929298 + 1 NA intron (NR_125826, intron 4 of 4) (AT)n|Simple_repeat|Simple_repeat 159724 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 255.5-37 chr7 41292026 41292475 + 1 NA Intergenic Intergenic 190646 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 278.25-5 chr14 38957993 38958428 + 1 NA Intergenic Intergenic -41328 NR_039982 283547 Hs.675941 NR_039982 ENSG00000259070 LINC00639 - long intergenic non-protein coding RNA 639 ncRNA 211.5-31 chr2 187126253 187126559 + 1 NA Intergenic Intergenic -277236 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 220.5-10 chr14 44197442 44197804 + 1 NA Intergenic HAL1|LINE|L1 309660 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 303.5-7 chr14 43198228 43198595 + 1 NA Intergenic Intergenic 1308872 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 289.75-4 chr11 105966381 105967031 + 1 NA intron (NM_001077243, intron 15 of 16) intron (NM_001077243, intron 15 of 16) 55534 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 169.75 chr1 62580896 62581221 + 1 NA intron (NM_001367561, intron 16 of 49) MER58B|DNA|hAT-Charlie -16462 NM_014495 27329 Hs.209153 NM_014495 ENSG00000132855 ANGPTL3 ANG-5|ANGPT5|ANL3|FHBL2 angiopoietin like 3 protein-coding 231.5-23 chr4 59395942 59396301 + 1 NA Intergenic Intergenic 382548 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 472.5-2 chr5 108821486 108822295 + 1 NA intron (NM_001308028, intron 3 of 17) L1MA9|LINE|L1 72942 NR_146155 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 316.75-9 chr5 144597163 144597874 + 1 NA Intergenic Tigger17a|DNA|TcMar-Tigger 392127 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 189.5-42 chr3 86262394 86262755 + 1 NA Intergenic L1MEd|LINE|L1 -219369 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 212.5-22 chr2 57743034 57743443 + 1 NA Intergenic Intergenic -164413 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 389.25-2 chr7 7696041 7696901 + 1 NA intron (NM_002947, intron 2 of 7) L4_A_Mam|LINE|RTE-X 22136 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 284.25-5 chr4 111829499 111830033 + 1 NA Intergenic Intergenic -315688 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 267.5-14 chr4 45664371 45664839 + 1 NA Intergenic HERV16-int|LTR|ERVL 459449 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 234.5-8 chr14 80504519 80504814 + 1 NA intron (NM_152446, intron 24 of 24) intron (NM_152446, intron 24 of 24) -273609 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 260.5 chr10 33472969 33473343 + 1 NA Intergenic Tigger12|DNA|TcMar-Tigger -138251 NR_045259 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 176.75-63 chr4 58767778 58768174 + 1 NA Intergenic Intergenic -216306 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 199.75-20 chr15 27140281 27140710 + 1 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 20824 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 287.5-16 chr5 24689740 24690273 + 1 NA Intergenic L1MA2|LINE|L1 -45028 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 328.5 chr1 239350616 239351242 + 1 NA Intergenic Intergenic -35639 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 193.25-6 chr1 193806514 193806818 + 1 NA Intergenic Intergenic 501921 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 277.5 chr1 227256552 227256936 + 1 NA intron (NM_001366019, intron 1 of 36) L1MB4|LINE|L1 61748 NM_001366010 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 182.5-80 chr8 127450026 127450242 + 1 NA intron (NR_024393, intron 4 of 4) MLT1K|LTR|ERVL-MaLR 32005 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 352.5-4 chr7 14578388 14578980 + 1 NA intron (NM_001350717, intron 18 of 24) L2a|LINE|L2 262766 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 234.75-28 chr9 68728907 68729335 + 1 NA intron (NM_001278253, intron 1 of 13) intron (NM_001278253, intron 1 of 13) 23707 NM_001278253 8395 Hs.534371 NM_003558 ENSG00000107242 PIP5K1B MSS4|STM7 phosphatidylinositol-4-phosphate 5-kinase type 1 beta protein-coding 197.5-8 chr11 74404711 74404935 + 1 NA Intergenic L1MB8|LINE|L1 5586 NR_039710 100616215 NR_039710 ENSG00000264402 MIR548AL - microRNA 548al ncRNA 230.25-29 chr7 13318989 13319288 + 1 NA Intergenic Intergenic 631505 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 245.75-3 chr1 82004105 82004382 + 1 NA Intergenic L2b|LINE|L2 201790 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 289.5-12 chr3 1006532 1006907 + 1 NA Intergenic MIR|SINE|MIR -86305 NM_001349359 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 244.5-28 chr6 151912957 151913404 + 1 NA intron (NM_001122741, intron 4 of 8) intron (NM_001122741, intron 4 of 8) 104073 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 276.75-12 chr6 143169493 143169840 + 1 NA intron (NM_001366354, intron 3 of 4) L1MA5|LINE|L1 4884 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 296.5-3 chr11 3623647 3624000 + 1 NA Intergenic LTR102_Mam|LTR|ERVL -2637 NR_002720 7221 Hs.131910 NR_002720 ENSG00000182048 TRPC2 - transient receptor potential cation channel subfamily C member 2 (pseudogene) pseudo 353.75-4 chr2 32806703 32807229 + 1 NA intron (NM_017735, intron 16 of 19) L1ME3A|LINE|L1 -18467 NR_027098 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 339.5-8 chrUn_KI270411v1 868 1863 + 1 NA NA ALR/Alpha|Satellite|centr NA NA 320.25-3 chr2 13362586 13363210 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -355885 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 302.5-14 chr8 134069024 134069540 + 1 NA Intergenic L1MEd|LINE|L1 182786 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 197.5-30 chr2 37868525 37868913 + 1 NA intron (NR_110012, intron 1 of 3) intron (NR_110012, intron 1 of 3) 7144 NR_110012 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 158.75-34 chr17 49759342 49759640 + 1 NA intron (NM_030802, intron 1 of 7) intron (NM_030802, intron 1 of 7) 4640 NM_030802 81558 Hs.514308 NM_030802 ENSG00000121104 FAM117A - family with sequence similarity 117 member A protein-coding 274.5-16 chr6 127323510 127323949 + 1 NA intron (NM_001002030, intron 3 of 5) intron (NM_001002030, intron 3 of 5) 18678 NM_001139510 55862 Hs.486410 NM_018479 ENSG00000093144 ECHDC1 HEL-S-76|MMCD|dJ351K20.2 ethylmalonyl-CoA decarboxylase 1 protein-coding 147.5-109 chr8 145050164 145050526 + 1 NA Intergenic LTR43|LTR|ERV1 -2122 NM_023080 65265 Hs.169615 NM_023080 ENSG00000182307 C8orf33 - chromosome 8 open reading frame 33 protein-coding 257.75-9 chr17 60298831 60299222 + 1 NA intron (NM_032582, intron 3 of 33) AluJr|SINE|Alu -67381 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 189.5-9 chr10 65341221 65341466 + 1 NA Intergenic Intergenic -230082 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 244.5-4 chr11 133970910 133971293 + 1 NA Intergenic MIRb|SINE|MIR -14305 NM_001277285 22997 Hs.204121 NM_014987 ENSG00000080854 IGSF9B - immunoglobulin superfamily member 9B protein-coding 261.25-6 chr19 7013803 7014275 + 1 NA Intergenic Intergenic 7392 NM_001364674 729458 NM_001364674 MBD3L2B - methyl-CpG binding domain protein 3 like 2B protein-coding 249.75-11 chr21 32022279 32022674 + 1 NA Intergenic Intergenic 63819 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 160.5-73 chr4 95273548 95273750 + 1 NA intron (NM_003728, intron 4 of 15) intron (NM_003728, intron 4 of 15) 182158 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 275.5-2 chr1 84438752 84439277 + 1 NA Intergenic Intergenic 30663 NM_058248 58511 Hs.129142 NM_021233 ENSG00000137976 DNASE2B DLAD deoxyribonuclease 2 beta protein-coding 280.25 chr1 151130314 151130927 + 1 NA Intergenic Intergenic 16011 NM_030913 10500 Hs.516316 NM_030913 ENSG00000143434 SEMA6C SEMAY|m-SemaY|m-SemaY2 semaphorin 6C protein-coding 246.25-13 chr12 33854453 33854758 + 1 NA Intergenic L1MA9|LINE|L1 -167891 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 364.25-3 chr4 34883574 34884211 + 1 NA Intergenic AluYk3|SINE|Alu -614145 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 173.5-30 chr18 46409913 46410248 + 1 NA intron (NM_001256758, intron 1 of 5) intron (NM_001256758, intron 1 of 5) 75856 NM_001256758 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|Ark2C|RNF111L2 ring finger protein 165 protein-coding 200.25-4 chr10 31867405 31867831 + 1 NA intron (NM_001270696, intron 3 of 17) L1ME4c|LINE|L1 41308 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 281.25-9 chr2 47983249 47983848 + 1 NA Intergenic Intergenic -77755 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 170.75-10 chr11 134402513 134402769 + 1 NA intron (NM_054025, intron 1 of 5) AluSx1|SINE|Alu 9277 NM_018644 27087 Hs.381050 NM_018644 ENSG00000109956 B3GAT1 CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1 beta-1,3-glucuronyltransferase 1 protein-coding 169.5-14 chr10 81168330 81168543 + 1 NA Intergenic L1MB7|LINE|L1 518639 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 263.5-3 chr10 65474058 65474576 + 1 NA Intergenic L2|LINE|L2 -97108 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 167.5-50 chr2 232582317 232582650 + 1 NA 3' UTR (NM_001282958, exon 8 of 8) 3' UTR (NM_001282958, exon 8 of 8) -23574 NM_001243252 80303 Hs.516769 NM_025202 ENSG00000115468 EFHD1 MST133|MSTP133|PP3051|SWS2 EF-hand domain family member D1 protein-coding 215.75-11 chr14 85627988 85628274 + 1 NA 3' UTR (NM_001346145, exon 2 of 2) 3' UTR (NM_001346145, exon 2 of 2) 94782 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 384.25-3 chr5 119416074 119416626 + 1 NA Intergenic Intergenic -36147 NM_001292027 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 326.25-7 chr8 115417377 115417747 + 1 NA intron (NM_001282902, intron 5 of 5) intron (NM_001282902, intron 5 of 5) 250451 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 274.75-11 chr20 3569015 3569409 + 1 NA intron (NM_001207047, intron 11 of 24) Tigger3|DNA|TcMar-Tigger 94187 NM_145762 64096 Hs.302025 NM_022139 ENSG00000125861 GFRA4 - GDNF family receptor alpha 4 protein-coding 197.75-8 chr10 71453703 71453945 + 1 NA intron (NM_052836, intron 3 of 12) intron (NM_052836, intron 3 of 12) 56890 NM_001171932 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 186.5-15 chr12 65439991 65440265 + 1 NA intron (NM_001031679, intron 5 of 6) intron (NM_001031679, intron 5 of 6) 117183 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 231.25-17 chr14 86988513 86989017 + 1 NA Intergenic Intergenic 82987 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 277.75-10 chr3 29705513 29705866 + 1 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 228467 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 199.5-19 chr18 38260038 38260400 + 1 NA Intergenic L1ME1|LINE|L1 603084 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 163.25-31 chr17 60382500 60382831 + 1 NA intron (NM_032582, intron 1 of 33) intron (NM_032582, intron 1 of 33) 9468 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 182.5-64 chr6 38340008 38340356 + 1 NA intron (NM_052893, intron 8 of 11) L1MC5|LINE|L1 -141414 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 247.75-21 chr4 98825611 98826099 + 1 NA Intergenic Intergenic 103278 NM_001130678 1977 Hs.13211 NM_001968 ENSG00000151247 EIF4E AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E eukaryotic translation initiation factor 4E protein-coding 196.75-18 chr15 80477894 80478245 + 1 NA intron (NM_014862, intron 5 of 18) intron (NM_014862, intron 5 of 18) 73687 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 214.75-4 chr1 83853991 83854446 + 1 NA intron (NR_119374, intron 1 of 2) intron (NR_119374, intron 1 of 2) 6328 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 226.5 chr1 59703881 59704196 + 1 NA intron (NM_001350790, intron 15 of 16) intron (NM_001350790, intron 15 of 16) 29258 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 412.5 chr10 83349334 83349800 + 1 NA Intergenic Intergenic 327522 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 167.5-29 chr16 83219808 83220026 + 1 NA intron (NM_001220489, intron 4 of 12) intron (NM_001220489, intron 4 of 12) -229619 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 194.5-39 chr22 41848166 41848430 + 1 NA intron (NR_103834, intron 1 of 21) AluY|SINE|Alu -13633 NR_157279 112637020 NR_157279 SREBF2-AS1 821D11.7|RP5 SREBF2 antisense RNA 1 ncRNA 145.75-120 chr7 123394733 123395003 + 1 NA Intergenic Intergenic 138080 NM_001282855 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 366.5-7 chr8 49258630 49259333 + 1 NA Intergenic L1PB4|LINE|L1 186637 NM_001256598 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 296.25-6 chr11 79922309 79922750 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -481499 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 242.5-21 chr3 74638109 74638570 + 1 NA Intergenic Intergenic -117199 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 221.5-9 chr11 42814470 42814849 + 1 NA Intergenic L1M2|LINE|L1 454710 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 261.75 chr1 6891484 6891919 + 1 NA intron (NM_001349608, intron 2 of 21) intron (NM_001349608, intron 2 of 21) 106247 NR_146203 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 245.5-30 chr5 155487121 155487512 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR 473561 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 242.25-23 chr8 137806757 137807173 + 1 NA Intergenic Intergenic 276580 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 345.5-3 chr19 57629115 57629505 + 1 NA Intergenic L1MC1|LINE|L1 -3857 NM_001265598 10520 Hs.590977 NM_006385 ENSG00000121417 ZNF211 C2H2-25|CH2H2-25|ZNF-25 zinc finger protein 211 protein-coding 229.5-6 chr12 25988220 25988572 + 1 NA intron (NM_001164747, intron 1 of 5) intron (NM_001164747, intron 1 of 5) 14641 NM_001164747 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 174.5-13 chr10 81543576 81543892 + 1 NA Intergenic L1MB5|LINE|L1 -331460 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 346.5-7 chr6 80426528 80426988 + 1 NA Intergenic L1PA7|LINE|L1 320087 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 214.5-29 chr3 78056287 78056547 + 1 NA Intergenic THE1A|LTR|ERVL-MaLR -7454 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 159.75-13 chr10 56040854 56041110 + 1 NA Intergenic Intergenic 320277 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 199.5-36 chr4 33909342 33909696 + 1 NA intron (NR_125902, intron 4 of 4) L1ME1|LINE|L1 130374 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 198.75-55 chr9 110872001 110872368 + 1 NA Intergenic Intergenic 143922 NM_001369398 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 180.5-74 chr9 15637908 15638181 + 1 NA intron (NM_001355547, intron 6 of 24) L1PA3|LINE|L1 74066 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 274.5-2 chr1 80749388 80749843 + 1 NA Intergenic Intergenic 108328 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 149.5-83 chr6 148009582 148009867 + 1 NA Intergenic Intergenic -262604 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 487.25-3 chr6 136212749 136213674 + 1 NA Intergenic Intergenic 37100 NM_001099286 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 257.5-9 chr17 61504997 61505430 + 1 NA Intergenic Intergenic 48725 NM_018488 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 183.5-9 chr12 2230729 2231172 + 1 NA intron (NM_199460, intron 3 of 49).2 MIR|SINE|MIR -7469 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 276.75-2 chr11 7045192 7045798 + 1 NA intron (NM_176822, intron 4 of 11) L2b|LINE|L2 25026 NM_176822 338323 Hs.449637 NM_176822 ENSG00000158077 NLRP14 CLR11.2|GC-LRR|NALP14|NOD5|PAN8 NLR family pyrin domain containing 14 protein-coding 432.25 chr8 59000300 59001021 + 1 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 118487 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 221.5-51 chr8 86860885 86861287 + 1 NA Intergenic L1ME3G|LINE|L1 -5329 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 188.25-52 chr6 122981453 122981860 + 1 NA Intergenic Intergenic -14579 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 153.5-31 chr14 64046231 64046454 + 1 NA intron (NM_015180, intron 45 of 114) intron (NM_015180, intron 45 of 114) 48783 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 206.5-31 chr4 58478262 58478658 + 1 NA Intergenic Intergenic 57868 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 293.5-7 chr2 230379432 230379822 + 1 NA intron (NM_001352892, intron 7 of 18) L1ME1|LINE|L1 -36529 NM_001206702 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 189.5-21 chr16 5873450 5873770 + 1 NA Intergenic Intergenic -145414 NM_018723 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 189.25-54 chr8 84765532 84765805 + 1 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 59741 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 252.75-14 chr2 49451271 49451871 + 1 NA Intergenic L1MC5a|LINE|L1 -297044 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 168.25-42 chr21 29882539 29882866 + 1 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 57294 NM_001330994 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 221.5-12 chr12 46522294 46522727 + 1 NA intron (NR_125380, intron 3 of 3) (A)n|Simple_repeat|Simple_repeat 138403 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 262.5-7 chr13 111072890 111073393 + 1 NA Intergenic L1MEf|LINE|L1 -22697 NR_120415 101927802 Hs.559193 NR_120415 LINC00368 - long intergenic non-protein coding RNA 368 ncRNA 255.5-23 chr4 31382616 31383063 + 1 NA Intergenic Intergenic -123705 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 209.75-28 chr3 185419952 185420287 + 1 NA intron (NM_004721, intron 1 of 13) intron (NM_004721, intron 1 of 13) 56983 NM_004721 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 191.75-21 chr13 39543409 39543636 + 1 NA intron (NM_005780, intron 2 of 3) intron (NM_005780, intron 2 of 3) 59671 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 171.25-55 chr7 32288730 32289038 + 1 NA intron (NM_001322059, intron 1 of 17) intron (NM_001322059, intron 1 of 17) 10444 NM_001191058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 202.5-57 chr7 83151198 83151502 + 1 NA intron (NM_033026, intron 2 of 24) intron (NM_033026, intron 2 of 24) 11534 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 163.5-114 chr8 82513376 82513651 + 1 NA Intergenic Intergenic -398591 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 221.75-12 chr13 23914881 23915242 + 1 NA intron (NR_073430, intron 3 of 4) intron (NR_073430, intron 3 of 4) -17559 NR_104426 387911 Hs.740810 NM_001007537 ENSG00000205863 C1QTNF9B CTRP9B C1q and TNF related 9B protein-coding 234.25-16 chr4 30634400 30634764 + 1 NA Intergenic Charlie1a|DNA|hAT-Charlie -85787 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 239.25-14 chr2 104127591 104128026 + 1 NA Intergenic L1MD2|LINE|L1 280524 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 167.75-60 chr4 32519807 32519990 + 1 NA Intergenic Intergenic 168860 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 332.75-3 chr2 138578245 138578765 + 1 NA Intergenic L1MEf|LINE|L1 76735 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 247.5-8 chr10 53644610 53645046 + 1 NA Intergenic Intergenic -841402 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 356.75-4 chr5 115277474 115278032 + 1 NA intron (NM_001040440, intron 3 of 9) intron (NM_001040440, intron 3 of 9) -14876 NM_005023 5229 Hs.254006 NM_005023 ENSG00000164219 PGGT1B BGGI|GGTI protein geranylgeranyltransferase type I subunit beta protein-coding 234.75-11 chr16 48533142 48533468 + 1 NA Intergenic AluSx1|SINE|Alu 76875 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 196.25-27 chr2 36161926 36162319 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR 193448 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 244.75 chr1 158396215 158396681 + 1 NA Intergenic Tigger13a|DNA|TcMar-Tigger 3018 NM_001004475 128360 Hs.553588 NM_001004475 ENSG00000186306 OR10T2 OR1-3 olfactory receptor family 10 subfamily T member 2 protein-coding 156.25-5 chr1 247663055 247663371 + 1 NA Intergenic L1MA8|LINE|L1 9828 NM_001005487 441933 Hs.553834 NM_001005487 ENSG00000197437 OR13G1 OR1-37 olfactory receptor family 13 subfamily G member 1 protein-coding 216.5-17 chr2 40398455 40398861 + 1 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 31646 NM_021097 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 497.5 chr1 101044773 101045395 + 1 NA intron (NR_109849, intron 1 of 4) AluSx1|SINE|Alu 19238 NR_109849 102606465 Hs.593669 NR_109849 LOC102606465 - uncharacterized LOC102606465 ncRNA 192.5-30 chr21 20938543 20938857 + 1 NA Intergenic Intergenic -59709 NM_001352596 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 296.5-11 chr3 98391218 98391717 + 1 NA exon (NM_001005516, exon 1 of 1) exon (NM_001005516, exon 1 of 1) 801 NM_001005516 403277 Hs.554709 NM_001005516 ENSG00000206536 OR5K3 - olfactory receptor family 5 subfamily K member 3 protein-coding 348.75-5 chr2 66474661 66475239 + 1 NA intron (NM_002398, intron 7 of 12) intron (NM_002398, intron 7 of 12) -34620 NR_046625 100873998 Hs.734698 NR_046625 ENSG00000230749 MEIS1-AS2 MEIS1-AS1 MEIS1 antisense RNA 2 ncRNA 216.5-3 chr1 172104405 172104699 + 1 NA intron (NR_146559, intron 14 of 20) L1M4|LINE|L1 -34256 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 323.5-8 chr4 85210888 85211309 + 1 NA Intergenic L1MB1|LINE|L1 243614 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 215.5-3 chr1 220134113 220134384 + 1 NA intron (NM_018060, intron 14 of 22) L1MC4|LINE|L1 -16007 NR_029711 406969 NR_029711 ENSG00000207624 MIR194-1 MIRN194-1|mir-194-1 microRNA 194-1 ncRNA 168.25-78 chr8 115704566 115704959 + 1 NA Intergenic LFSINE_Vert|SINE|tRNA -35787 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 214.5-37 chr4 132341120 132341566 + 1 NA Intergenic Intergenic -249746 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 314.5-2 chr11 27795791 27796304 + 1 NA Intergenic Intergenic -74017 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 179.5-72 chr7 97822849 97823051 + 1 NA Intergenic L1MC5a|LINE|L1 49215 NM_001178077 440 Hs.489207 NM_001673 ENSG00000070669 ASNS ASNSD|TS11 asparagine synthetase (glutamine-hydrolyzing) protein-coding 299.25-13 chr6 109022883 109023653 + 1 NA intron (NM_014454, intron 1 of 9) intron (NM_014454, intron 1 of 9) -13713 NM_001199933 27244 Hs.591336 NM_014454 ENSG00000080546 SESN1 PA26|SEST1 sestrin 1 protein-coding 169.75-23 chr11 107166835 107167131 + 1 NA Intergenic MER1B|DNA|hAT-Charlie -148507 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 215.25-21 chr2 178238369 178238673 + 1 NA intron (NM_001201480, intron 1 of 25) MER44C|DNA|TcMar-Tigger 44009 NM_001201480 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 173.75-72 chr8 124457610 124457857 + 1 NA Intergenic Intergenic 6913 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 172.25-60 chr5 107850148 107850383 + 1 NA Intergenic Tigger13a|DNA|TcMar-Tigger -179328 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 206.25-26 chr3 6205072 6205402 + 1 NA Intergenic L1MA9|LINE|L1 600212 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 166.25-30 chr16 80674600 80674928 + 1 NA intron (NM_152342, intron 2 of 6) L1MB7|LINE|L1 -101956 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 221.75-6 chr11 76308420 76308728 + 1 NA Intergenic Intergenic 72391 NR_130898 5612 Hs.503315 NM_004705 ENSG00000137492 THAP12 DAP4|P52rIPK|PRKRIR|THAP0 THAP domain containing 12 protein-coding 167.5-32 chr17 52534063 52534367 + 1 NA intron (NR_146898, intron 2 of 3) intron (NR_146898, intron 2 of 3) 143693 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 208.5-58 chr8 118771972 118772269 + 1 NA Intergenic Intergenic -150157 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 151.5-77 chr4 119555855 119556054 + 1 NA intron (NM_033437, intron 7 of 20) intron (NM_033437, intron 7 of 20) 71783 NM_033430 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 353.75 chr12 15066612 15067327 + 1 NA Intergenic Intergenic 65136 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 267.5-16 chr4 79294125 79294650 + 1 NA intron (NR_038342, intron 4 of 5) intron (NR_038342, intron 4 of 5) 31674 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 192.75-19 chr13 73816138 73816450 + 1 NA intron (NM_007249, intron 4 of 7) intron (NM_007249, intron 4 of 7) 252050 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 150.75-91 chr7 33898904 33899175 + 1 NA Intergenic L1MB2|LINE|L1 -5876 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 313.5 chr1 183929667 183930171 + 1 NA 3' UTR (NM_001303420, exon 12 of 12) 3' UTR (NM_001303420, exon 12 of 12) 107809 NM_001303421 23127 Hs.387995 NM_015101 ENSG00000198756 COLGALT2 C1orf17|ColGalT 2|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding 296.75-4 chr20 23395705 23396115 + 1 NA intron (NM_001283020, intron 2 of 9) intron (NM_001283020, intron 2 of 9) 25578 NR_104266 63908 Hs.269471 NM_022080 ENSG00000125814 NAPB SNAP-BETA|SNAPB NSF attachment protein beta protein-coding 247.5-28 chr5 147270214 147270585 + 1 NA intron (NM_001112724, intron 2 of 12) AluJb|SINE|Alu 35373 NM_001112724 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 238.5-22 chr2 161332513 161333045 + 1 NA intron (NM_005805, intron 3 of 11) intron (NM_005805, intron 3 of 11) 24354 NM_005805 10213 Hs.740477 NM_005805 ENSG00000115233 PSMD14 PAD1|POH1|RPN11 proteasome 26S subunit, non-ATPase 14 protein-coding 149.25-114 chr8 127376842 127377129 + 1 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -23414 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 332.75-5 chr8 129310898 129311294 + 1 NA Intergenic L1ME2|LINE|L1 -69856 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 170.25-14 chr13 99203612 99203991 + 1 NA intron (NR_026644, intron 1 of 8) L2a|LINE|L2 2947 NR_026644 337867 Hs.508545 NM_177967 ENSG00000134882 UBAC2 PHGDHL1 UBA domain containing 2 protein-coding 323.25-5 chr5 94282833 94283513 + 1 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -171474 NM_001163417 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 163.75-50 chr4 61652689 61652982 + 1 NA intron (NM_001371343, intron 5 of 23) intron (NM_001371343, intron 5 of 23) 450663 NM_001371342 237.5-17 chr2 143955773 143956192 + 1 NA intron (NM_024659, intron 7 of 9) intron (NM_024659, intron 7 of 9) 18915 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 272.5-7 chr2 17899326 17899655 + 1 NA intron (NM_002252, intron 1 of 2) intron (NM_002252, intron 1 of 2) 20823 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 204.25-4 chr10 89739846 89740135 + 1 NA intron (NM_016195, intron 21 of 32) L1ME3E|LINE|L1 38400 NM_016195 9585 Hs.240 NM_016195 ENSG00000138182 KIF20B CT90|KRMP1|MPHOSPH1|MPP-1|MPP1 kinesin family member 20B protein-coding 154.5-38 chr17 41956232 41956466 + 1 NA intron (NR_146622, intron 10 of 11) AluJb|SINE|Alu -10446 NM_033133 1267 Hs.273621 NM_033133 ENSG00000173786 CNP CNP1 2',3'-cyclic nucleotide 3' phosphodiesterase protein-coding 193.25-62 chr8 121882011 121882342 + 1 NA Intergenic Intergenic -240736 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 236.75-25 chr5 171238479 171238926 + 1 NA intron (NM_022897, intron 22 of 27) intron (NM_022897, intron 22 of 27) -70546 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 248.5-6 chr14 29593915 29594369 + 1 NA intron (NM_001330069, intron 17 of 18) intron (NM_001330069, intron 17 of 18) 332954 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 149.25-3 chr1 95339050 95339297 + 1 NA Intergenic MIRb|SINE|MIR 12934 NR_146486 101928169 NR_146486 LINC01650 - long intergenic non-protein coding RNA 1650 ncRNA 187.75-50 chr3 118111279 118111570 + 1 NA Intergenic Intergenic -420499 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 221.5-24 chr2 21937236 21937538 + 1 NA Intergenic Intergenic -226735 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 156.75-36 chr14 21775177 21775406 + 1 NA Intergenic Intergenic -104274 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 246.25-20 chr2 13031242 13031745 + 1 NA Intergenic L1ME2|LINE|L1 -24480 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 150.5-87 chr4 112560337 112560553 + 1 NA intron (NM_018392, intron 19 of 27) intron (NM_018392, intron 19 of 27) -44265 NM_024019 63973 Hs.744415 NM_024019 ENSG00000178403 NEUROG2 Atoh4|Math4A|NGN2|bHLHa8|ngn-2 neurogenin 2 protein-coding 408.25 chr2 67111839 67112678 + 1 NA intron (NR_110564, intron 1 of 4) L1MEg|LINE|L1 25812 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 243.75-6 chr15 61887469 61887855 + 1 NA intron (NM_001018088, intron 67 of 81) AluJb|SINE|Alu 157744 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 188.25-18 chr16 25728481 25728733 + 1 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 36648 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 159.5-55 chr3 147967649 147967939 + 1 NA Intergenic Intergenic -110365 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 159.75-19 chr11 34801741 34801918 + 1 NA Intergenic L1PB|LINE|L1 -114301 NM_001135024 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDHXD|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 258.5-7 chr14 43816095 43816513 + 1 NA Intergenic Intergenic 690979 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 230.75-9 chr12 38911575 38911836 + 1 NA Intergenic Intergenic -6114 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 161.25-11 chr11 30721401 30721613 + 1 NA Intergenic Intergenic -135154 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 195.75-23 chr15 27119070 27119360 + 1 NA intron (NM_001270873, intron 3 of 5) MER21A|LTR|ERVL 42104 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 240.5-11 chr17 55366220 55366624 + 1 NA Intergenic Intergenic 55413 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 204.75-2 chr1 45400210 45400610 + 1 NA intron (NM_007170, intron 3 of 10) MLT1D|LTR|ERVL-MaLR -59940 NM_001293192 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 289.5-6 chr12 17946513 17946907 + 1 NA Intergenic Intergenic 143483 NM_001286201 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 333.5-3 chr12 19728175 19728642 + 1 NA Intergenic Intergenic -286277 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 254.75-27 chr8 127289709 127290130 + 1 NA non-coding (NR_117100, exon 6 of 6) non-coding (NR_117100, exon 6 of 6) 45282 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 260.5-17 chr8 120650773 120651226 + 1 NA intron (NM_021021, intron 2 of 6) MIRb|SINE|MIR -110254 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 193.25-52 chr5 172368002 172368305 + 1 NA intron (NM_001017995, intron 6 of 12) L2a|LINE|L2 82556 NR_130933 100288254 Hs.531911 NM_001007542 LOC100288254 - uncharacterized LOC100288254 ncRNA 165.5-27 chr12 62682347 62682671 + 1 NA intron (NM_020700, intron 8 of 9) intron (NM_020700, intron 8 of 9) 78823 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i|let-7i microRNA let-7i ncRNA 172.5-41 chr21 18956602 18956806 + 1 NA Intergenic Intergenic -196892 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 179.5-8 chr10 48614756 48615027 + 1 NA intron (NM_001347738, intron 2 of 10) L1M4|LINE|L1 -9760 NM_001347737 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 261.5-18 chr3 187542645 187543213 + 1 NA Intergenic Intergenic 95883 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 253.75-19 chr3 4636880 4637265 + 1 NA intron (NM_001168272, intron 5 of 60) intron (NM_001168272, intron 5 of 60) 114518 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 352.75-2 chr5 44048657 44049047 + 1 NA Intergenic Intergenic -339880 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 251.25-23 chr4 78270717 78271093 + 1 NA intron (NM_001166133, intron 9 of 41) intron (NM_001166133, intron 9 of 41) -18080 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 159.25-53 chr3 107664131 107664348 + 1 NA intron (NM_001276286, intron 3 of 16) L1ME3E|LINE|L1 141277 NM_020235 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 296.75-7 chr8 123846146 123846479 + 1 NA Intergenic L1MCa|LINE|L1 -5675 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 242.75-21 chr3 83797727 83798154 + 1 NA Intergenic OldhAT1|DNA|hAT-Ac 1071635 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 318.5-8 chr8 83927880 83928643 + 1 NA Intergenic L1M1|LINE|L1 -254526 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 192.5-41 chr3 177410320 177410693 + 1 NA Intergenic Intergenic -31415 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 211.5-42 chr6 155693475 155693881 + 1 NA Intergenic Intergenic 178834 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 232.5-3 chr1 116501011 116501530 + 1 NA Intergenic Intergenic -22444 NR_125973 101929023 Hs.668091 NR_125972 ENSG00000233154 LINC01762 - long intergenic non-protein coding RNA 1762 ncRNA 306.75 chr10 130072928 130073396 + 1 NA intron (NR_149170, intron 3 of 4) L1MEd|LINE|L1 -32847 NR_044994 119437 Hs.620802 NR_044994 ENSG00000233122 CTAGE7P CTAGE7|CTAGEP|bA500G10.2|rcCTAGE5 CTAGE family member 7, pseudogene pseudo 177.75-4 chr1 88165101 88165526 + 1 NA Intergenic Intergenic -518831 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 147.75-79 chr4 75747230 75747513 + 1 NA intron (NM_003715, intron 1 of 23) AluJr4|SINE|Alu 22849 NM_003715 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 215.75-14 chr17 70913973 70914255 + 1 NA Intergenic Intergenic 288065 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 249.5-22 chr5 24587465 24587854 + 1 NA intron (NM_001362460, intron 2 of 9) intron (NM_001362460, intron 2 of 9) 57319 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 161.75-18 chr14 53737798 53738067 + 1 NA Intergenic Intergenic 210552 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 165.25-57 chr5 163740057 163740330 + 1 NA Intergenic L1MC3|LINE|L1 234574 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 334.75-6 chr20 56638951 56639550 + 1 NA TTS (NM_003222) TTS (NM_003222) 9944 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 294.25-16 chr8 116648154 116648833 + 1 NA intron (NM_003756, intron 6 of 7) intron (NM_003756, intron 6 of 7) -3607 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 218.5-6 chr10 44001526 44001926 + 1 NA Intergenic Intergenic 89324 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 263.25-26 chr6 87397410 87397981 + 1 NA non-coding (NR_026784, exon 1 of 2) non-coding (NR_026784, exon 1 of 2) 571 NR_026784 63914 Hs.645177 NM_022084 ENSG00000111850 LINC01590 C6orf164|dJ102H19.4 long intergenic non-protein coding RNA 1590 ncRNA 240.75-23 chr7 3226970 3227396 + 1 NA Intergenic L1PB2|LINE|L1 -68610 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 354.5 chr14 36124652 36125145 + 1 NA intron (NR_073454, intron 1 of 2) intron (NR_073454, intron 1 of 2) 51753 NR_049735 100886964 Hs.742592 NR_049735 PTCSC3 - papillary thyroid carcinoma susceptibility candidate 3 ncRNA 186.5-45 chr3 181374215 181374431 + 1 NA intron (NR_075091, intron 3 of 7) L1ME3E|LINE|L1 68163 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 153.5-64 chr3 103297331 103297616 + 1 NA Intergenic Intergenic 226643 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 246.25-7 chr10 49159568 49159881 + 1 NA intron (NM_001288742, intron 4 of 4) L1MC4|LINE|L1 -25704 NM_001164484 170370 Hs.646291 NM_001164484 ENSG00000172538 FAM170B C10orf73 family with sequence similarity 170 member B protein-coding 270.25-15 chr5 15646104 15646507 + 1 NA intron (NM_001278317, intron 2 of 3) MIR|SINE|MIR -31303 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 187.25-2 chr1 60897762 60898170 + 1 NA Intergenic Intergenic -72382 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 150.5-8 chr1 101735833 101736023 + 1 NA Intergenic Intergenic 111152 NM_001288821 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 157.75-112 chr8 136725673 136725974 + 1 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 195025 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 165.25-69 chr8 119010951 119011302 + 1 NA intron (NM_001324095, intron 1 of 7) L1MC1|LINE|L1 -56121 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 391.25-3 chr5 42650626 42651062 + 1 NA intron (NM_001242403, intron 3 of 9) intron (NM_001242403, intron 3 of 9) 84980 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 308.75-2 chr10 95823695 95824071 + 1 NA intron (NM_001164183, intron 2 of 7) intron (NM_001164183, intron 2 of 7) 67720 NM_001776 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 305.25-7 chr6 98070853 98071342 + 1 NA Intergenic L1PA16|LINE|L1 46566 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 352.5-3 chr5 16235878 16236241 + 1 NA Intergenic Intergenic 55818 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 284.75-16 chr6 110030483 110030947 + 1 NA Intergenic L1ME2|LINE|L1 52404 NM_005284 2830 Hs.46332 NM_005284 ENSG00000146360 GPR6 - G protein-coupled receptor 6 protein-coding 262.5-14 chr4 54929908 54930262 + 1 NA Intergenic Intergenic 195510 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 229.25-4 chr1 221850447 221850898 + 1 NA Intergenic Intergenic -10006 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 198.75-5 chr10 83555936 83556164 + 1 NA Intergenic L2b|LINE|L2 121039 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 205.5-50 chr9 90036923 90037147 + 1 NA intron (NR_038882, intron 1 of 3) intron (NR_038882, intron 1 of 3) 4464 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 181.25-2 chr1 100000207 100000575 + 1 NA intron (NM_001271684, intron 3 of 5) L1M2|LINE|L1 29874 NM_001271685 23443 Hs.448979 NM_012243 ENSG00000117620 SLC35A3 AMRS solute carrier family 35 member A3 protein-coding 234.25-18 chr6 34666928 34667439 + 1 NA intron (NM_022758, intron 1 of 3) intron (NM_022758, intron 1 of 3) -28971 NR_134625 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 260.75-12 chr14 77268342 77268910 + 1 NA intron (NM_021257, intron 2 of 3) intron (NM_021257, intron 2 of 3) 2408 NR_031661 100302236 NR_031661 ENSG00000221754 MIR1260A MIR1260|MIRN1260|hsa-mir-1260|hsa-mir-1260a|mir-1260a microRNA 1260a ncRNA 271.5-17 chr7 103619865 103620216 + 1 NA intron (NM_005045, intron 20 of 64) THE1B|LTR|ERVL-MaLR -173833 NR_135802 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 263.5-27 chr9 102673007 102673318 + 1 NA Intergenic L1MEd|LINE|L1 153525 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 220.5-12 chr14 80443674 80443958 + 1 NA intron (NR_038355, intron 8 of 8) L1MA3|LINE|L1 -212759 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 153.25-56 chr2 24955847 24956117 + 1 NA intron (NM_016544, intron 5 of 6) intron (NM_016544, intron 5 of 6) 15973 NM_016544 51277 Hs.434993 NM_016544 ENSG00000115137 DNAJC27 RBJ|RabJS DnaJ heat shock protein family (Hsp40) member C27 protein-coding 400.5-2 chr2 72513663 72514269 + 1 NA intron (NR_135774, intron 10 of 19) intron (NR_135774, intron 10 of 19) 312067 NM_001321730 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 227.25-20 chr2 84328225 84328610 + 1 NA Intergenic Intergenic 37735 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 344.25-7 chr5 73068507 73069222 + 1 NA intron (NM_001146032, intron 18 of 24) intron (NM_001146032, intron 18 of 24) -51711 NM_001161342 134285 Hs.162246 NM_173490 ENSG00000157111 TMEM171 PRP2 transmembrane protein 171 protein-coding 317.75-4 chr4 18308743 18309129 + 1 NA Intergenic Intergenic -287061 NM_001365659 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 265.5-16 chr5 37579769 37580216 + 1 NA intron (NM_001345998, intron 9 of 17) intron (NM_001345998, intron 9 of 17) 200674 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 168.5-2 chr1 51728061 51728374 + 1 NA intron (NM_148906, intron 3 of 22) L2b|LINE|L2 -1633 NM_148907 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 215.75-29 chr5 125592695 125593110 + 1 NA intron (NR_109887, intron 3 of 3) L1ME3Cz|LINE|L1 99641 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 196.75-20 chr18 74595384 74595613 + 1 NA intron (NR_024484, intron 1 of 1) intron (NR_024484, intron 1 of 1) 2337 NR_024484 400657 Hs.61508 NM_001008234 ENSG00000264247 LINC00909 - long intergenic non-protein coding RNA 909 ncRNA 222.5-10 chr10 102992919 102993285 + 1 NA intron (NM_199076, intron 1 of 6) L2c|LINE|L2 -74767 NR_160733 107984265 NR_160733 LOC107984265 - uncharacterized LOC107984265 ncRNA 245.25-5 chr10 88738374 88738746 + 1 NA intron (NM_001080518, intron 6 of 8) intron (NM_001080518, intron 6 of 8) 14016 NM_001080518 643414 Hs.632092 NM_001080518 ENSG00000204021 LIPK LIPL2|bA186O14.2 lipase family member K protein-coding 251.75-24 chr6 62970848 62971348 + 1 NA Intergenic Intergenic 348879 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 208.25-14 chr12 12209971 12210258 + 1 NA intron (NM_002336, intron 2 of 22).2 intron (NM_002336, intron 2 of 22).2 56930 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 179.75-36 chr3 80594029 80594233 + 1 NA Intergenic Zaphod|DNA|hAT-Tip100 -170766 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 165.75-32 chr13 91088425 91088613 + 1 NA intron (NR_104057, intron 1 of 1) LTR16C|LTR|ERVL 1098 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 212.5-42 chr5 125526314 125526558 + 1 NA intron (NR_109887, intron 3 of 3) L1M7|LINE|L1 33175 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 234.5-24 chr7 78535261 78535720 + 1 NA intron (NM_001301128, intron 3 of 20) L2b|LINE|L2 188248 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 168.5-76 chr4 121698718 121699050 + 1 NA Intergenic MIR3|SINE|MIR -1904 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 185.75-59 chr5 25469499 25469807 + 1 NA Intergenic Intergenic 278700 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 252.25-17 chr7 48058386 48058692 + 1 NA intron (NM_001100159, intron 8 of 8) L1MA7|LINE|L1 22996 NM_001267866 136288 Hs.258357 NM_001100159 ENSG00000164746 C7orf57 - chromosome 7 open reading frame 57 protein-coding 171.25-42 chr4 41169526 41169726 + 1 NA intron (NM_173075, intron 1 of 16) intron (NM_173075, intron 1 of 16) 44916 NM_001330656 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 258.75-5 chr11 103637636 103637960 + 1 NA Intergenic LTR85a|LTR|Gypsy? -212108 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 218.5-23 chr3 97438614 97438932 + 1 NA promoter-TSS (NM_001278300) promoter-TSS (NM_001278300) -834 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 192.5-8 chr10 120206420 120206851 + 1 NA Intergenic MER2|DNA|TcMar-Tigger 148588 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 354.75-4 chr2 156848622 156849114 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -408837 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 271.25-17 chr6 68408909 68409283 + 1 NA Intergenic Intergenic -79197 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 183.5-67 chr7 79874005 79874230 + 1 NA Intergenic Intergenic -260714 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 160.75-62 chr2 75700267 75700478 + 1 NA intron (NM_001201334, intron 4 of 16) intron (NM_001201334, intron 4 of 16) 10543 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 206.5-53 chr9 79740683 79741085 + 1 NA Intergenic Intergenic -83646 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 363.75-4 chr14 20744768 20745508 + 1 NA promoter-TSS (NM_006683) promoter-TSS (NM_006683) -749 NM_006683 10876 Hs.304757 NM_006683 ENSG00000181562 EDDM3A EP3A|FAM12A|HE3-ALPHA|HE3A|HE3ALPHA|RAM1 epididymal protein 3A protein-coding 175.75-58 chr5 95778254 95778563 + 1 NA intron (NM_014899, intron 8 of 11) MER2|DNA|TcMar-Tigger 44318 NM_001243658 2745 Hs.28988 NM_002064 ENSG00000173221 GLRX GRX|GRX1 glutaredoxin protein-coding 228.25-28 chr7 51939671 51940137 + 1 NA Intergenic Intergenic -546648 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 212.5-39 chr4 93446282 93446564 + 1 NA intron (NM_001286838, intron 9 of 14) MLT1H|LTR|ERVL-MaLR -382330 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 186.5-63 chr6 119438954 119439227 + 1 NA Intergenic Intergenic 52212 NR_046100 285762 Hs.571063 NR_046100 LOC285762 - uncharacterized LOC285762 ncRNA 222.75-28 chr4 65480333 65480633 + 1 NA intron (NM_001281767, intron 5 of 16) intron (NM_001281767, intron 5 of 16) 189005 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 468.5-2 chr3 176179013 176179592 + 1 NA Intergenic L1MA3|LINE|L1 -65249 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 203.5-51 chr4 85148036 85148338 + 1 NA Intergenic Intergenic 180703 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 184.25-15 chr11 91287923 91288467 + 1 NA Intergenic L1MEg|LINE|L1 -418993 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 153.5-71 chr4 44550037 44550294 + 1 NA Intergenic Intergenic -101356 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 176.5-71 chr6 48044486 48044738 + 1 NA intron (NM_207499, intron 1 of 2) MER58A|DNA|hAT-Charlie 24077 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 161.25-42 chr21 23472977 23473249 + 1 NA Intergenic Intergenic -88278 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 331.25 chr13 83456572 83456931 + 1 NA Intergenic L1M4|LINE|L1 425642 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 226.5-17 chr2 212491081 212491513 + 1 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 47331 NM_001042599 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 220.5-2 chr10 65890432 65890761 + 1 NA Intergenic L1MA8|LINE|L1 319171 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 524.5-2 chr6 62237384 62238100 + 1 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 48483 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 271.25-4 chr12 15899534 15900033 + 1 NA intron (NM_007178, intron 7 of 9) intron (NM_007178, intron 7 of 9) -11549 NM_015954 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 340.5-4 chr9 103180611 103180983 + 1 NA intron (NR_121578, intron 8 of 9) intron (NR_121578, intron 8 of 9) 144236 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 178.5-14 chr12 4172034 4172497 + 1 NA Intergenic Intergenic -101497 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 243.5-21 chr6 38745952 38746337 + 1 NA intron (NM_001371, intron 7 of 91) L1MC4a|LINE|L1 30833 NM_001206927 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 288.75-5 chr11 113540009 113540641 + 1 NA Intergenic Intergenic -64927 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 380.5 chr17 70995215 70995976 + 1 NA Intergenic MER74B|LTR|ERVL 206584 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 158.5-19 chr14 21414123 21414369 + 1 NA intron (NM_001170629, intron 9 of 37) intron (NM_001170629, intron 9 of 37) -16845 NR_002916 319103 Hs.680078 NR_002916 ENSG00000200785 SNORD8 RNU6C|mgU6-53 small nucleolar RNA, C/D box 8 snoRNA 217.5-33 chr6 150327694 150328047 + 1 NA Intergenic MER5A1|DNA|hAT-Charlie -41142 NM_001318495 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 252.5-30 chrX 86301563 86302212 + 1 NA intron (NM_001139515, intron 1 of 11) intron (NM_001139515, intron 1 of 11) 38919 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 183.25-4 chr1 145778593 145778918 + 1 NA intron (NM_014455, intron 3 of 8) L1ME1|LINE|L1 45340 NM_014455 27246 Hs.523550 NM_014455 ENSG00000265491 RNF115 BCA2|ZNF364 ring finger protein 115 protein-coding 227.25-9 chr12 10629120 10629508 + 1 NA intron (NM_018423, intron 6 of 10) MER3|DNA|hAT-Charlie -15705 NM_001319985 55110 Hs.104650 NM_018048 ENSG00000111196 MAGOHB MGN2|mago|magoh mago homolog B, exon junction complex subunit protein-coding 175.5-39 chr18 4271393 4271738 + 1 NA intron (NR_036489, intron 1 of 2) Tigger15a|DNA|TcMar-Tigger 6963 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 227.5-17 chr4 62982750 62983103 + 1 NA Intergenic Intergenic -821161 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 276.5-11 chr6 39666427 39666801 + 1 NA intron (NM_001289020, intron 3 of 21) Ricksha|DNA|MULE-MuDR 58794 NM_001289020 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 283.75 chr11 65980241 65980759 + 1 NA TTS (NM_005146) TTS (NM_005146) 18766 NM_005146 9092 Hs.502883 NM_005146 ENSG00000175467 SART1 Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP protein-coding 265.75 chr1 91861424 91861820 + 1 NA non-coding (NR_036634, exon 2 of 18) non-coding (NR_036634, exon 2 of 18) 24529 NR_036634 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 152.5-20 chr12 126715889 126716147 + 1 NA Intergenic Intergenic -20989 NR_038256 100507206 Hs.662298 NR_038256 LINC00943 - long intergenic non-protein coding RNA 943 ncRNA 188.5-34 chr3 2468770 2469011 + 1 NA intron (NM_175607, intron 3 of 24) MLT1L|LTR|ERVL-MaLR 230061 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 251.25-28 chr6_KI270800v1_alt 80892 81371 + 1 NA Intergenic Intergenic 68065 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 248.5-11 chr2 193323988 193324288 + 1 NA Intergenic Intergenic 574293 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 239.5-2 chr1 71540198 71540675 + 1 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 296576 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 183.5-59 chr4 174596881 174597269 + 1 NA Intergenic Intergenic -74177 NM_001256305 3248 Hs.596913 NM_000860 ENSG00000164120 HPGD 15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1 15-hydroxyprostaglandin dehydrogenase protein-coding 309.5-6 chr7 91872291 91872667 + 1 NA 3' UTR (NM_006980, exon 3 of 3) 3' UTR (NM_006980, exon 3 of 3) 8223 NM_001301134 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 186.5-6 chr1 151988407 151988667 + 1 NA intron (NM_002966, intron 1 of 2) intron (NM_002966, intron 1 of 2) 5322 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 225.75-14 chr2 232530394 232530819 + 1 NA intron (NM_001256657, intron 6 of 10) intron (NM_001256657, intron 6 of 10) 4446 NM_001256657 1144 Hs.156289 NM_000751 ENSG00000135902 CHRND ACHRD|CMS2A|CMS3A|CMS3B|CMS3C|FCCMS|SCCMS cholinergic receptor nicotinic delta subunit protein-coding 322.75-2 chr18 65338976 65339724 + 1 NA Intergenic Intergenic -410902 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 252.5-13 chr2 150737932 150738290 + 1 NA Intergenic L1ME1|LINE|L1 109214 NR_110247 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 200.75-35 chr4 18382368 18382584 + 1 NA Intergenic Intergenic -360601 NM_001365659 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 273.5-7 chr3 45613850 45614269 + 1 NA intron (NM_014240, intron 1 of 7) intron (NM_014240, intron 1 of 7) 19308 NM_014240 8994 Hs.193370 NM_014240 ENSG00000144791 LIMD1 - LIM domains containing 1 protein-coding 316.5-5 chr8 121270537 121271011 + 1 NA Intergenic Intergenic -368572 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 227.75-18 chr2 173222774 173223384 + 1 NA 3' UTR (NM_133646, exon 12 of 12) 3' UTR (NM_133646, exon 12 of 12) 58957 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 212.25-16 chr15 79079483 79079800 + 1 NA intron (NM_001145648, intron 1 of 26) L1ME4b|LINE|L1 11139 NM_002891 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 183.75-66 chr4 166944252 166944475 + 1 NA intron (NM_001204355, intron 2 of 8) L1MC4|LINE|L1 290063 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 156.5-86 chr5 67942028 67942263 + 1 NA Intergenic Intergenic 148932 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 242.25-8 chr18 175199 175540 + 1 NA intron (NM_001037334, intron 3 of 14) L1M5|LINE|L1 16812 NM_001037334 9097 Hs.464416 NM_005151 ENSG00000101557 USP14 TGT ubiquitin specific peptidase 14 protein-coding 377.25 chr1 244627259 244627858 + 1 NA intron (NM_001130957, intron 20 of 21) AluJr|SINE|Alu -25490 NR_123736 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 224.75-44 chr8 51241756 51242340 + 1 NA Intergenic MamRep1151|LTR?|LTR? 567397 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 190.5-66 chr8 124861511 124861815 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -39605 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 278.5-17 chr7 86688942 86689512 + 1 NA intron (NM_001363522, intron 1 of 4) intron (NM_001363522, intron 1 of 4) 45313 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 197.75-39 chr21 28311719 28312035 + 1 NA Intergenic L1M4|LINE|L1 -83210 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 260.25-28 chr8 136928355 136928667 + 1 NA Intergenic MLT1G3|LTR|ERVL-MaLR 397713 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 209.5-30 chr2 58036363 58036836 + 1 NA intron (NM_001288838, intron 3 of 15) intron (NM_001288838, intron 3 of 15) -10043 NM_001130482 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 220.25-28 chr4 39686854 39687163 + 1 NA Intergenic AluJb|SINE|Alu -11128 NM_001312647 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 260.25-10 chr2 31647739 31648174 + 1 NA Intergenic L1ME4b|LINE|L1 -67018 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 155.75-110 chr9 123139823 123140051 + 1 NA intron (NR_033234, intron 13 of 18) intron (NR_033234, intron 13 of 18) -24460 NR_026677 81571 Hs.708072 NM_030814 ENSG00000236901 MIR600HG C9orf45|GL012|NCRNA00287 MIR600 host gene ncRNA 233.5-17 chr3 17281773 17282117 + 1 NA intron (NM_014744, intron 15 of 21) intron (NM_014744, intron 15 of 21) 348749 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 257.25-25 chr8 86457253 86457927 + 1 NA intron (NM_007013, intron 21 of 24) (TG)n|Simple_repeat|Simple_repeat 51096 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 293.5-9 chr4 127915321 127915762 + 1 NA Intergenic L1MC5a|LINE|L1 34297 NM_001190801 10733 Hs.172052 NM_014264 ENSG00000142731 PLK4 MCCRP2|SAK|STK18 polo like kinase 4 protein-coding 150.25-88 chr5 175158298 175158531 + 1 NA Intergenic MIR|SINE|MIR -162683 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 168.5-29 chr14 86499548 86499819 + 1 NA Intergenic Intergenic -406095 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 266.75-21 chr8 136310395 136310812 + 1 NA Intergenic Intergenic -220195 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 145.75-21 chr12 39909215 39909576 + 1 NA intron (NM_052885, intron 4 of 9) intron (NM_052885, intron 4 of 9) 196686 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 429.25 chr2 228506632 228507205 + 1 NA intron (NR_151716, intron 1 of 3) intron (NR_151716, intron 1 of 3) 104477 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 338.75-9 chr9 103585112 103585615 + 1 NA Intergenic Intergenic -260330 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 215.25-32 chr4 71823166 71823639 + 1 NA Intergenic Intergenic -17882 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 298.75-4 chr14 63368089 63368629 + 1 NA Intergenic L1MB5|LINE|L1 -49424 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 334.75-10 chr8 82221902 82222386 + 1 NA Intergenic L1ME3|LINE|L1 -379858 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 334.75-3 chr12 40683965 40684450 + 1 NA Intergenic Intergenic -8232 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 157.75-19 chr10 73311087 73311288 + 1 NA intron (NM_001367801, intron 12 of 27) intron (NM_001367801, intron 12 of 27) 47567 NM_001350933 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 357.5 chr17 67735482 67736052 + 1 NA intron (NM_001303272, intron 7 of 16) intron (NM_001303272, intron 7 of 16) -4903 NR_003706 100124536 Hs.693446 NR_003706 ENSG00000200394 SNORA38B - small nucleolar RNA, H/ACA box 38B snoRNA 251.5-8 chr12 109352059 109352460 + 1 NA Intergenic Intergenic 7229 NR_120462 101928138 Hs.143843 NR_120462 ENSG00000256560 LINC01486 - long intergenic non-protein coding RNA 1486 ncRNA 191.5-46 chr5 44939428 44939695 + 1 NA Intergenic MLT2A2|LTR|ERVL 130614 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 152.5-8 chr10 9455020 9455260 + 1 NA Intergenic MIR|SINE|MIR -159547 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 193.25-33 chr2 232802179 232802609 + 1 NA intron (NM_015575, intron 16 of 30) L1MB3|LINE|L1 -25829 NM_002242 3769 Hs.467338 NM_002242 ENSG00000115474 KCNJ13 KIR1.4|KIR7.1|LCA16|SVD potassium voltage-gated channel subfamily J member 13 protein-coding 159.5-4 chr1 151235399 151235695 + 1 NA intron (NM_001135637, intron 7 of 13) L2c|LINE|L2 -19187 NM_002810 5710 Hs.505059 NM_002810 ENSG00000159352 PSMD4 AF|AF-1|ASF|MCB1|Rpn10|S5A|pUB-R5 proteasome 26S subunit, non-ATPase 4 protein-coding 198.5-31 chr2 204640660 204641003 + 1 NA intron (NM_205863, intron 1 of 21) L2a|LINE|L2 95356 NM_205863 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 224.5-41 chrX 71002216 71002586 + 1 NA Intergenic Intergenic 65933 NM_013346 29934 Hs.260750 NM_013346 ENSG00000147164 SNX12 - sorting nexin 12 protein-coding 172.5-43 chr3 1257786 1258043 + 1 NA intron (NM_001289080, intron 4 of 22) intron (NM_001289080, intron 4 of 22) 164890 NM_001349350 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 490.75 chr2 78219469 78220356 + 1 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) 70819 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 162.5-69 chr5 6988702 6989011 + 1 NA Intergenic Intergenic -160935 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 210.75-38 chr6 118125170 118125572 + 1 NA intron (NM_001029858, intron 1 of 7) intron (NM_001029858, intron 1 of 7) 39468 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 286.25-13 chr8 90841539 90841847 + 1 NA intron (NM_022351, intron 3 of 12) intron (NM_022351, intron 3 of 12) 49918 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 258.75-22 chr8 121780023 121780589 + 1 NA Intergenic Intergenic -138866 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 262.25-4 chr11 24178061 24178360 + 1 NA Intergenic L1M1|LINE|L1 -318843 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 196.75-29 chr2 167913194 167913418 + 1 NA intron (NR_131227, intron 1 of 4) intron (NR_131227, intron 1 of 4) 27838 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 336.5-8 chr6 70774259 70774744 + 1 NA intron (NM_021940, intron 4 of 9) intron (NM_021940, intron 4 of 9) 105971 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 188.25-38 chr4 66455472 66455695 + 1 NA Intergenic L1MA6|LINE|L1 178759 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 248.5-9 chr2 41193763 41194230 + 1 NA Intergenic Intergenic -681561 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 223.25-22 chr4 47959022 47959385 + 1 NA intron (NR_125879, intron 2 of 2) intron (NR_125879, intron 2 of 2) 22330 NM_001142564 1259 Hs.1323 NM_000087 ENSG00000198515 CNGA1 CNCG|CNCG1|CNG-1|CNG1|RCNC1|RCNCa|RCNCalpha|RP49 cyclic nucleotide gated channel alpha 1 protein-coding 210.25-17 chr18 77897933 77898472 + 1 NA Intergenic Intergenic 95525 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 220.5-26 chr4 64919270 64919696 + 1 NA intron (NR_033976, intron 6 of 6) HAL1|LINE|L1 85017 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 204.75-6 chr1 189528194 189528514 + 1 NA Intergenic Intergenic 947656 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 178.75-21 chr16 65540742 65540984 + 1 NA intron (NR_027755, intron 2 of 8) L1MC3|LINE|L1 35437 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 211.75-47 chr9 75236209 75236530 + 1 NA Intergenic HERVL18-int|LTR|ERVL 147855 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 353.5-7 chr4 150557255 150557670 + 1 NA intron (NM_001367550, intron 40 of 56) L1MC3|LINE|L1 -21627 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 275.5-11 chr21 18792181 18792611 + 1 NA Intergenic L1ME3E|LINE|L1 -32584 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 193.25-70 chrX 14401828 14402236 + 1 NA Intergenic (ATGT)n|Simple_repeat|Simple_repeat -127266 NM_001118885 2742 Hs.2700 NM_002063 ENSG00000101958 GLRA2 GLR glycine receptor alpha 2 protein-coding 276.75-13 chr7 30432313 30432772 + 1 NA intron (NM_006092, intron 12 of 13) L1MB8|LINE|L1 41657 NR_108081 100506516 NR_108081 ENSG00000281404 LINC01176 - long intergenic non-protein coding RNA 1176 ncRNA 376.75-2 chr17 61199815 61200514 + 1 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 167540 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 194.5-52 chr6 107959730 107960095 + 1 NA Intergenic Intergenic -1704 NM_007214 11231 Hs.26904 NM_007214 ENSG00000025796 SEC63 DNAJC23|ERdj2|PCLD2|PRO2507|SEC63L SEC63 homolog, protein translocation regulator protein-coding 364.25-4 chr7 52047654 52048300 + 1 NA Intergenic Intergenic -654721 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 160.5-69 chr4 2384888 2385357 + 1 NA intron (NM_020972, intron 1 of 12) intron (NM_020972, intron 1 of 12) -20308 NM_001172660 57732 Hs.292056 NM_020972 ENSG00000159733 ZFYVE28 LST2|LYST2 zinc finger FYVE-type containing 28 protein-coding 184.25-60 chr6 65651122 65651612 + 1 NA intron (NM_001292009, intron 1 of 43) intron (NM_001292009, intron 1 of 43) 55858 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 196.75-27 chr2 136464261 136464610 + 1 NA Intergenic L1M6|LINE|L1 -301110 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 171.5-53 chr2 204715267 204715471 + 1 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 169894 NM_205863 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 265.5-21 chr7 49545101 49545490 + 1 NA Intergenic L1MEf|LINE|L1 -228343 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 237.5-12 chr18 1471546 1471919 + 1 NA Intergenic MER34|LTR|ERV1 -112103 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 237.5-26 chr5 24914659 24915071 + 1 NA Intergenic Intergenic -74282 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 166.25-10 chr10 52166589 52166788 + 1 NA intron (NM_001098512, intron 9 of 17) intron (NM_001098512, intron 9 of 17) 147440 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 152.75-25 chr12 26577535 26577776 + 1 NA intron (NM_002223, intron 34 of 56) intron (NM_002223, intron 34 of 56) 255539 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 227.25-21 chr2 202372454 202372829 + 1 NA Intergenic MER44C|DNA|TcMar-Tigger -3686 NM_001204 659 Hs.471119 NM_001204 ENSG00000204217 BMPR2 BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK bone morphogenetic protein receptor type 2 protein-coding 185.75-64 chr5 112320092 112320442 + 1 NA intron (NM_001347887, intron 1 of 23) intron (NM_001347887, intron 1 of 23) 91984 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 236.5-24 chr4 117464789 117465154 + 1 NA intron (NR_125757, intron 2 of 3) intron (NR_125757, intron 2 of 3) 36573 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 178.25-37 chr3 44005415 44005706 + 1 NA Intergenic Intergenic -108652 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 301.75-5 chr20 7981225 7981763 + 1 NA 3' UTR (NM_021156, exon 8 of 8) 3' UTR (NM_021156, exon 8 of 8) 38267 NM_021156 56255 Hs.169358 NM_021156 ENSG00000125827 TMX4 DJ971N18.2|PDIA14|TXNDC13 thioredoxin related transmembrane protein 4 protein-coding 251.5-26 chr5 115508024 115508358 + 1 NA Intergenic Intergenic 36584 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 352.25-2 chr20 31671344 31672057 + 1 NA intron (NR_134257, intron 1 of 2) MER106A|DNA|hAT-Charlie 33788 NM_032609 84701 Hs.277101 NM_032609 ENSG00000131055 COX4I2 COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2 cytochrome c oxidase subunit 4I2 protein-coding 186.75-46 chr20 24842404 24842707 + 1 NA Intergenic Intergenic -106714 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 180.5 chr1 104676419 104676702 + 1 NA Intergenic Intergenic 603537 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 379.5 chr1 73522704 73523513 + 1 NA Intergenic Intergenic -151571 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 204.5-33 chr5 123389061 123389374 + 1 NA intron (NM_153223, intron 9 of 20) intron (NM_153223, intron 9 of 20) 34375 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 291.5-9 chr5 9882345 9882761 + 1 NA intron (NR_027112, intron 4 of 12) AluSz6|SINE|Alu 21271 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 175.75-53 chr4 108815045 108815339 + 1 NA intron (NM_198721, intron 36 of 36) intron (NM_198721, intron 36 of 36) -52139 NM_001331031 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 225.5-7 chr10 110268340 110268652 + 1 NA intron (NM_005962, intron 3 of 5) intron (NM_005962, intron 3 of 5) 36424 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 567.25 chr17 71607886 71608650 + 1 NA Intergenic Intergenic -406089 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 300.75-8 chrX 73071705 73072190 + 1 NA Intergenic L1MB1|LINE|L1 7565 NM_001012977 340529 Hs.450320 NM_001012977 ENSG00000186288 PABPC1L2A RBM32A poly(A) binding protein cytoplasmic 1 like 2A protein-coding 246.5-3 chr10 34445979 34446369 + 1 NA intron (NM_001184791, intron 4 of 20) intron (NM_001184791, intron 4 of 20) 369122 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 198.5-30 chr2 176636257 176636614 + 1 NA intron (NR_040001, intron 1 of 2) intron (NR_040001, intron 1 of 2) 1139 NR_040001 375295 Hs.636452 NR_040001 LINC01116 TALNEC2 long intergenic non-protein coding RNA 1116 ncRNA 196.75-57 chr8 117551851 117552338 + 1 NA Intergenic Intergenic 31381 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 251.25-8 chr12 44826242 44826622 + 1 NA intron (NM_006159, intron 3 of 20) intron (NM_006159, intron 3 of 20) 49229 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 190.75-69 chr8 84976382 84976707 + 1 NA Intergenic Intergenic -130694 NM_001349636 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 334.75-8 chr5 148924218 148924751 + 1 NA Intergenic MIR|SINE|MIR 97891 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 172.25-2 chr1 99257713 99258113 + 1 NA Intergenic Charlie17b|DNA|hAT-Charlie -6379 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 243.75-17 chr7 68556634 68557066 + 1 NA Intergenic ERVL-E-int|LTR|ERVL 536597 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 268.5-2 chr1 236430314 236430685 + 1 NA intron (NM_080738, intron 4 of 5) intron (NM_080738, intron 4 of 5) 35086 NM_080738 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR associated death domain protein-coding 158.5-53 chr2 212701397 212701711 + 1 NA Intergenic Intergenic -93777 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 417.25-3 chr4 70514564 70515433 + 1 NA Intergenic L2c|LINE|L2 -3571 NM_212557 401138 Hs.453069 NM_212557 ENSG00000187689 AMTN AI3B|UNQ689 amelotin protein-coding 205.75-31 chr19 52144990 52145278 + 1 NA Intergenic Intergenic -5196 NR_135823 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 277.25-6 chr2 208544889 208545296 + 1 NA intron (NR_136588, intron 1 of 5) intron (NR_136588, intron 1 of 5) 2450 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 150.75-96 chr8 59378328 59378584 + 1 NA Intergenic Intergenic 259246 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 247.25-9 chr15 91185451 91185891 + 1 NA intron (NM_001323040, intron 2 of 12) intron (NM_001323040, intron 2 of 12) 83875 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 157.5-48 chr2 144652593 144652871 + 1 NA Intergenic Intergenic -15235 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 203.5-71 chr8 113405548 113405919 + 1 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) -28581 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 335.25-2 chr2 14649910 14650697 + 1 NA non-coding (NR_144632, exon 5 of 5) non-coding (NR_144632, exon 5 of 5) 17586 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 212.5-33 chr3 89241392 89241810 + 1 NA intron (NM_182644, intron 3 of 6) MIR|SINE|MIR 133980 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 203.5-55 chr4 171600213 171600559 + 1 NA Intergenic Intergenic 38377 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 207.75-11 chr12 56728004 56728516 + 1 NA Intergenic AluJb|SINE|Alu -2961 NM_001113202 4666 Hs.505735 NM_005594 ENSG00000196531 NACA HSD48|NAC-alpha|NACA1|skNAC nascent polypeptide associated complex subunit alpha protein-coding 189.5-74 chr8 130862817 130863133 + 1 NA intron (NM_001115, intron 9 of 17) L1MC3|LINE|L1 177934 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 280.75-8 chr2 158408495 158409065 + 1 NA intron (NM_138803, intron 1 of 13) L1MA9|LINE|L1 47973 NM_001301684 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 263.75-14 chr3 188817216 188817616 + 1 NA intron (NM_001167672, intron 7 of 9) intron (NM_001167672, intron 7 of 9) 128635 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 193.5-50 chr4 42677840 42678083 + 1 NA Intergenic MER57-int|LTR|ERV1 -20856 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 194.75-29 chr3 99475774 99476100 + 1 NA Intergenic L1MEg|LINE|L1 -162657 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 225.75-12 chr2 33012230 33012561 + 1 NA intron (NM_206943, intron 2 of 33) intron (NM_206943, intron 2 of 33) 65442 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 213.5-8 chr10 59233873 59234289 + 1 NA intron (NM_001143774, intron 1 of 4) intron (NM_001143774, intron 1 of 4) 56614 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 197.25-40 chr5 26824819 26825218 + 1 NA Intergenic Intergenic 213568 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 210.5-20 chr2 68760580 68760933 + 1 NA intron (NM_001364821, intron 1 of 10) L1MB3|LINE|L1 -14154 NM_014882 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 323.5-4 chr18 28979920 28980355 + 1 NA Intergenic L1MEc|LINE|L1 -803007 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 303.5-11 chr4 63241865 63242438 + 1 NA Intergenic L1ME3A|LINE|L1 -1080386 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 214.5-46 chr6 161448387 161448794 + 1 NA intron (NM_004562, intron 9 of 11) intron (NM_004562, intron 9 of 11) -22387 NR_134593 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 244.25-14 chr2 228679501 228679874 + 1 NA Intergenic Intergenic -68292 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 459.75 chr10 57844351 57845063 + 1 NA Intergenic Intergenic 423187 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 221.25-26 chr4 115499562 115499996 + 1 NA Intergenic L1ME1|LINE|L1 -386159 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 513.75 chr6 128708360 128709205 + 1 NA Intergenic Intergenic -174356 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 211.25-34 chr5 28725009 28725369 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR -201681 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 189.5-56 chr5 122202981 122203209 + 1 NA Intergenic Intergenic 42919 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 157.75-115 chr9 109779098 109779381 + 1 NA promoter-TSS (NM_007203) promoter-TSS (NM_007203) -959 NM_147150 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 181.75-22 chr12 127233512 127233775 + 1 NA Intergenic Intergenic 50640 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 258.5-20 chr4 47806543 47806872 + 1 NA intron (NM_006587, intron 2 of 21) intron (NM_006587, intron 2 of 21) -24638 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 178.25-18 chr14 81981162 81981382 + 1 NA Intergenic Intergenic -238134 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 238.5-33 chr6 22687569 22687838 + 1 NA intron (NR_134614, intron 1 of 2) intron (NR_134614, intron 1 of 2) 30221 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 186.5-40 chr3 84529071 84529415 + 1 NA Intergenic Intergenic 340332 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 158.75-51 chr3 95962375 95962696 + 1 NA Intergenic L1M4c|LINE|L1 -279342 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 256.5-23 chrX 58429216 58429524 + 1 NA Intergenic ALR/Alpha|Satellite|centr -518737 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 308.75-7 chr2 57108729 57109508 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -798533 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 162.75-38 chr2 99333282 99333699 + 1 NA intron (NM_005783, intron 1 of 4) intron (NM_005783, intron 1 of 4) 2843 NM_005783 10190 Hs.536122 NM_005783 ENSG00000115514 TXNDC9 APACD|PHLP3 thioredoxin domain containing 9 protein-coding 308.25-5 chr9 34457055 34457826 + 1 NA intron (NM_001184942, intron 1 of 5) CpG 1130 NM_147202 203259 Hs.493771 NM_147202 ENSG00000164970 FAM219A C9orf25 family with sequence similarity 219 member A protein-coding 283.5-18 chr8 82916833 82917370 + 1 NA intron (NR_134295, intron 2 of 3) L1MC|LINE|L1 4997 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 167.5-88 chr7 98095336 98095659 + 1 NA Intergenic L1MB7|LINE|L1 -11365 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 168.5-64 chr3 42175867 42176146 + 1 NA intron (NM_014965, intron 1 of 12) intron (NM_014965, intron 1 of 12) 15813 NM_014965 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 187.25-55 chr6 62617852 62618113 + 1 NA Intergenic L2a|LINE|L2 -331755 NM_001350622 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 148.5-86 chr6 145921163 145921464 + 1 NA exon (NM_173082, exon 21 of 30) exon (NM_173082, exon 21 of 30) 42784 NM_173082 257218 Hs.723297 NM_173082 ENSG00000146414 SHPRH bA545I5.2 SNF2 histone linker PHD RING helicase protein-coding 152.25-78 chr5 42389020 42389240 + 1 NA Intergenic L2b|LINE|L2 -34309 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 307.75-9 chr8 113570593 113571040 + 1 NA Intergenic Intergenic -133877 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 166.5-45 chr21 23905945 23906195 + 1 NA Intergenic Intergenic 415307 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 188.5-69 chr8 87037198 87037452 + 1 NA intron (NM_173538, intron 4 of 10) HAL1|LINE|L1 170910 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 250.5-9 chr14 53548210 53548733 + 1 NA Intergenic Intergenic 395117 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 152.25-103 chrX 78693030 78693218 + 1 NA Intergenic Intergenic -33796 NM_152694 203430 Hs.134873 NM_152694 ENSG00000179300 RTL3 Mar3|Mart3|SIRH9|ZCCHC5|ZHC5 retrotransposon Gag like 3 protein-coding 265.25-18 chr7 121161609 121162079 + 1 NA intron (NM_001105533, intron 15 of 17) intron (NM_001105533, intron 15 of 17) -163523 NM_016087 51384 Hs.272375 NM_016087 ENSG00000002745 WNT16 - Wnt family member 16 protein-coding 304.5-8 chr6 122713716 122714107 + 1 NA intron (NM_001270394, intron 6 of 7) intron (NM_001270394, intron 6 of 7) -35290 NM_001319042 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 181.75-8 chr1 222398149 222398382 + 1 NA Intergenic Intergenic 149839 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 189.25-53 chr8 83748837 83749256 + 1 NA Intergenic Intergenic 345288 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 150.5-120 chr8 105652005 105652235 + 1 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 332577 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 236.25-2 chr1 93423011 93423400 + 1 NA Intergenic Intergenic -24913 NM_017737 54874 Hs.134060 NM_017737 ENSG00000137942 FNBP1L C1orf39|TOCA1 formin binding protein 1 like protein-coding 153.75-90 chr8 131606176 131606480 + 1 NA Intergenic L3|LINE|CR1 -297765 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 188.5-20 chr14 41428269 41428648 + 1 NA Intergenic L1PA17|LINE|L1 -178398 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 257.5-22 chr8 90536514 90536801 + 1 NA Intergenic MIR3|SINE|MIR 69406 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 152.25-60 chr22 37729288 37729704 + 1 NA intron (NM_001039141, intron 7 of 23) intron (NM_001039141, intron 7 of 23) 16448 NR_160697 102724378 NR_160696 LOC102724378 - uncharacterized LOC102724378 ncRNA 206.75-10 chr10 84463175 84463476 + 1 NA intron (NM_018999, intron 6 of 10) L1ME3|LINE|L1 38156 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 213.75-35 chr6 113057681 113058100 + 1 NA Intergenic L2|LINE|L2 375557 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 187.75-27 chr16 60764485 60764821 + 1 NA Intergenic Intergenic 291113 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 183.75-81 chr6 50376621 50376887 + 1 NA Intergenic L1MB8|LINE|L1 -326825 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 212.25-3 chr1 115418308 115418723 + 1 NA Intergenic Intergenic -80279 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 278.5 chr1 55986536 55986950 + 1 NA Intergenic L2a|LINE|L2 41656 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 262.75-14 chr2 176368259 176368609 + 1 NA Intergenic L2c|LINE|L2 98992 NM_006554 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 192.75-70 chr9 99613632 99613920 + 1 NA intron (NR_109802, intron 3 of 6) intron (NR_109802, intron 3 of 6) 206113 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 153.5-58 chr20 22359370 22359685 + 1 NA Intergenic L1PA16|LINE|L1 61116 NR_027090 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 176.5-90 chr8 111300985 111301261 + 1 NA Intergenic Intergenic -64920 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 226.25-15 chr2 191805801 191806418 + 1 NA intron (NR_157850, intron 2 of 4) Charlie2b|DNA|hAT-Charlie 13269 NR_157850 729254 NR_157850 LOC729254 - hCG2045843 ncRNA 281.75-3 chr11 21370426 21370809 + 1 NA intron (NM_201551, intron 14 of 18) MIRb|SINE|MIR 701031 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 227.75-29 chr6 65607049 65607305 + 1 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) -27373 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 214.5-11 chr14 71757818 71758204 + 1 NA Intergenic Intergenic 171713 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 232.25-31 chr6 156965327 156966042 + 1 NA intron (NM_020732, intron 5 of 19) intron (NM_020732, intron 5 of 19) -70743 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 169.75-50 chr3 118417726 118418144 + 1 NA Intergenic L1MA3|LINE|L1 -223833 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 168.25-65 chr6 42334314 42334527 + 1 NA intron (NM_001297573, intron 3 of 17) intron (NM_001297573, intron 3 of 17) -116559 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 182.25-2 chr1 71137999 71138508 + 1 NA intron (NR_046217, intron 2 of 3) intron (NR_046217, intron 2 of 3) 56929 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 378.25-2 chr4 32547953 32548373 + 1 NA Intergenic Intergenic 197125 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 240.75-15 chr3 43917500 43917930 + 1 NA Intergenic LTR33A|LTR|ERVL -196497 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 190.25-53 chr7 106311675 106312196 + 1 NA Intergenic L2c|LINE|L2 -26952 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 366.5-5 chr3 102640777 102641618 + 1 NA Intergenic MER33|DNA|hAT-Charlie 206182 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 155.75-108 chr9 33015149 33015345 + 1 NA intron (NM_001368996, intron 1 of 7) intron (NM_001368996, intron 1 of 7) 9873 NM_001369002 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 279.75-21 chr8 136932106 136932445 + 1 NA Intergenic Intergenic 401477 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 270.5-6 chr14 73320438 73321025 + 1 NA intron (NM_001005743, intron 5 of 12) L2a|LINE|L2 -74730 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 258.25-27 chr8 124867200 124867640 + 1 NA Intergenic L2b|LINE|L2 -45362 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 169.25-27 chr2 150881848 150882092 + 1 NA Intergenic MER57A1|LTR|ERV1 253073 NR_110247 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 259.75-4 chr10 54645912 54646339 + 1 NA intron (NR_134503, intron 4 of 5) intron (NR_134503, intron 4 of 5) -38168 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 262.75-12 chr18 6919323 6919760 + 1 NA Intergenic L1MA9|LINE|L1 10328 NR_034100 400643 Hs.253920 NM_001103383 ENSG00000265933 LINC00668 - long intergenic non-protein coding RNA 668 ncRNA 274.75-16 chr6 28180063 28180427 + 1 NA Intergenic Intergenic 18484 NR_103448 651302 Hs.172143 NM_001145129 ENSG00000226314 ZNF192P1 ZNF389|ZNF389P|dJ265C24.4 zinc finger protein 192 pseudogene 1 pseudo 226.75-4 chr11 24112107 24112674 + 1 NA Intergenic Intergenic -384663 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 216.5-24 chr3 30151552 30151931 + 1 NA Intergenic MIR3|SINE|MIR -217585 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 299.25-4 chr13 43618862 43619419 + 1 NA intron (NM_001127615, intron 1 of 16) L1PB1|LINE|L1 10337 NM_001127615 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 174.75-22 chr14 20101635 20101973 + 1 NA Intergenic L1MC4|LINE|L1 -15664 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 347.5-12 chr6 124245823 124246208 + 1 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -36990 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 256.5-15 chr6 56598375 56598712 + 1 NA exon (NM_015548, exon 27 of 84) exon (NM_015548, exon 27 of 84) 44346 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 149.5-63 chr3 121206903 121207120 + 1 NA intron (NM_001348343, intron 10 of 27) intron (NM_001348343, intron 10 of 27) 157371 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 149.5-47 chr2 111205615 111205874 + 1 NA intron (NR_136162, intron 4 of 4) Tigger3|DNA|TcMar-Tigger 84830 NM_001204113 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 178.5-46 chr21 26327159 26327392 + 1 NA Intergenic Intergenic -66360 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 212.5-41 chr5 38157764 38158080 + 1 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 9442 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 226.75-29 chrX 81568261 81568651 + 1 NA Intergenic L1MA4A|LINE|L1 366354 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 235.5-12 chr16 9375625 9375986 + 1 NA intron (NR_135195, intron 1 of 2) L1MA5A|LINE|L1 20217 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 165.75-83 chr5 163816632 163816991 + 1 NA Intergenic Intergenic 311192 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 247.5-32 chr7 112402391 112402679 + 1 NA Intergenic Intergenic -20609 NM_001007245 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 241.75-20 chr5 128550800 128551188 + 1 NA Intergenic HAL1ME|LINE|L1 -12749 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 390.25-3 chr9 38264550 38265141 + 1 NA Intergenic L1MA4|LINE|L1 -127857 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 180.25-40 chr21 28785160 28785485 + 1 NA Intergenic Tigger4b|DNA|TcMar-Tigger 100045 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 147.5-35 chr18 71222987 71223223 + 1 NA Intergenic L2|LINE|L2 355851 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 271.25-13 chr4 25721649 25722262 + 1 NA Intergenic MER34A|LTR|ERV1 65491 NM_001177999 10568 Hs.479372 NM_006424 ENSG00000157765 SLC34A2 NAPI-3B|NAPI-IIb|NPTIIb solute carrier family 34 member 2 protein-coding 208.25-9 chr10 65732021 65732378 + 1 NA intron (NR_120647, intron 4 of 5) intron (NR_120647, intron 4 of 5) 160774 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 191.25-59 chr6 55841992 55842257 + 1 NA intron (NM_001329754, intron 1 of 5) intron (NM_001329754, intron 1 of 5) 33466 NM_001329756 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 281.25-11 chr3 152145194 152145625 + 1 NA Intergenic MER21-int|LTR|ERVL 60020 NR_136178 101928166 NR_136178 LOC101928166 - uncharacterized LOC101928166 ncRNA 275.75-17 chr9 26744066 26744472 + 1 NA Intergenic Intergenic 148533 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 157.5-54 chr20 7324035 7324337 + 1 NA Intergenic Intergenic -16754 NR_135005 101929288 Hs.738005 NR_135005 ENSG00000261249 LINC01751 - long intergenic non-protein coding RNA 1751 ncRNA 173.5-28 chr16 73582862 73583144 + 1 NA Intergenic Intergenic 196198 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 284.75-5 chr15 69508565 69508939 + 1 NA Intergenic MLT1F|LTR|ERVL-MaLR -52968 NR_026979 145837 Hs.410126 NR_026979 DRAIC - downregulated RNA in cancer, inhibitor of cell invasion and migration ncRNA 258.5-4 chr11 90438014 90438684 + 1 NA intron (NR_104190, intron 1 of 6) Tigger17a|DNA|TcMar-Tigger 117508 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 382.25-5 chr8 119132502 119133508 + 1 NA Intergenic Intergenic -64223 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 354.75-7 chr4 104151894 104152269 + 1 NA Intergenic Intergenic -338884 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 320.5-9 chr5 35295367 35295846 + 1 NA Intergenic (TATACAT)n|Simple_repeat|Simple_repeat -65119 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 306.25-9 chr4 165392573 165392973 + 1 NA intron (NM_001873, intron 1 of 8) intron (NM_001873, intron 1 of 8) 6531 NR_030304 693163 NR_030304 ENSG00000207559 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 353.25 chr3 96749009 96749596 + 1 NA Intergenic Intergenic -65292 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 179.25-7 chr1 163571852 163572166 + 1 NA Intergenic Intergenic -148818 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 230.5-19 chr21 46646201 46646658 + 1 NA intron (NM_001286678, intron 4 of 6) intron (NM_001286678, intron 4 of 6) 10755 NM_001242866 3275 Hs.154163 NM_001535 ENSG00000160310 PRMT2 HRMT1L1 protein arginine methyltransferase 2 protein-coding 227.5-36 chr9 3437101 3437373 + 1 NA intron (NM_001282116, intron 1 of 16) intron (NM_001282116, intron 1 of 16) -41641 NM_002919 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 300.75-2 chr1 220833738 220834158 + 1 NA intron (NR_046901, intron 1 of 2) intron (NR_046901, intron 1 of 2) 4693 NR_110797 101929730 Hs.398159 NR_110797 ENSG00000238078 LINC01352 - long intergenic non-protein coding RNA 1352 ncRNA 184.75-9 chr1 206742399 206742739 + 1 NA Intergenic Intergenic -28204 NM_153758 29949 Hs.661017 NM_013371 ENSG00000142224 IL19 IL-10C|MDA1|NG.1|ZMDA1 interleukin 19 protein-coding 279.5-7 chr22 26382284 26382666 + 1 NA 3' UTR (NM_001184774, exon 16 of 16) 3' UTR (NM_001184774, exon 16 of 16) -46785 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 211.25-7 chr12 5356646 5357010 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -75280 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 240.75-26 chr9 113312904 113313326 + 1 NA TTS (NM_001006615) TTS (NM_001006615) -9739 NM_001371235 155.5-78 chr5 5350502 5350772 + 1 NA Intergenic Intergenic -72040 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 196.25-29 chr2 47807106 47807517 + 1 NA TTS (NM_001281492) TTS (NM_001281492) 23356 NM_001281494 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 286.5 chr1 197739255 197739806 + 1 NA intron (NM_001195216, intron 2 of 2) L1MEc|LINE|L1 35950 NR_125340 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 236.75-28 chr7 94277702 94278107 + 1 NA Intergenic Intergenic 114288 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 397.25-2 chr10 32889479 32890179 + 1 NA Intergenic Intergenic 11643 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 284.5-8 chr2 212263678 212264050 + 1 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 162496 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 303.5-3 chr10 64413723 64414128 + 1 NA Intergenic MSTB2|LTR|ERVL-MaLR -411603 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 193.5-19 chr14 41032433 41032717 + 1 NA intron (NR_109758, intron 3 of 3) L1PA17|LINE|L1 77864 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 281.25-2 chr12 4605569 4606016 + 1 NA intron (NM_001371301, intron 11 of 14) Charlie2b|DNA|hAT-Charlie 929 NM_001282285 8798 Hs.439530 NM_003845 ENSG00000010219 DYRK4 - dual specificity tyrosine phosphorylation regulated kinase 4 protein-coding 257.75-3 chr10 101943163 101943557 + 1 NA intron (NM_024541, intron 22 of 25) L1MEc|LINE|L1 -99440 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 271.75-17 chr5 87218516 87219109 + 1 NA intron (NR_130914, intron 2 of 2) AluY|SINE|Alu 20389 NR_130914 55338 Hs.677194 NM_018382 LINC01949 - long intergenic non-protein coding RNA 1949 ncRNA 291.25-3 chr10 107440770 107441441 + 1 NA Intergenic Intergenic -276399 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 232.75-11 chr17 29497231 29497615 + 1 NA intron (NM_025142, intron 11 of 17) intron (NM_025142, intron 11 of 17) 69614 NM_198147 116236 Hs.106510 NM_198147 ENSG00000168792 ABHD15 - abhydrolase domain containing 15 protein-coding 235.75-18 chr2 176383252 176383660 + 1 NA Intergenic MER53|DNA|hAT 114014 NM_006554 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 317.75-2 chr15 59722538 59722910 + 1 NA Intergenic Intergenic -33404 NM_004330 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 211.25-19 chr2 17406247 17406663 + 1 NA Intergenic L1MEd|LINE|L1 111985 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 249.25-4 chr13 101338195 101338558 + 1 NA intron (NM_001350749, intron 7 of 43) intron (NM_001350749, intron 7 of 43) 78132 NM_001350751 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 274.5-5 chr13 39192749 39193127 + 1 NA Intergenic Intergenic 154482 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 257.5-10 chr17 76623170 76623596 + 1 NA Intergenic L1MC4a|LINE|L1 20374 NR_110309 55808 Hs.105352 NM_018414 ENSG00000070526 ST6GALNAC1 HSY11339|SIAT7A|ST6GalNAcI|STYI ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 protein-coding 236.25-37 chr9 27668339 27668928 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -94767 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 217.25-21 chr2 12436312 12436662 + 1 NA intron (NR_110196, intron 4 of 5) L1ME4b|LINE|L1 237357 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 195.75-25 chr15 99249036 99249296 + 1 NA intron (NM_001353869, intron 2 of 12) intron (NM_001353869, intron 2 of 12) 415 NR_109947 64927 Hs.513195 NM_022905 ENSG00000103852 TTC23 HCC-8 tetratricopeptide repeat domain 23 protein-coding 167.75-21 chr12 86273769 86273940 + 1 NA intron (NM_001351286, intron 4 of 7) intron (NM_001351286, intron 4 of 7) -16555 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 356.5-3 chr14 47814524 47815120 + 1 NA Intergenic L1PB1|LINE|L1 -19808 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 324.5-5 chr20 60924431 60925002 + 1 NA Intergenic L1MC3|LINE|L1 -154348 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 183.5-55 chr4 87669754 87670230 + 1 NA Intergenic Intergenic 19712 NM_001079911 1758 Hs.652366 NM_004407 ENSG00000152592 DMP1 ARHP|ARHR|DMP-1 dentin matrix acidic phosphoprotein 1 protein-coding 191.25-51 chr4 53194611 53194982 + 1 NA intron (NM_152540, intron 4 of 8) intron (NM_152540, intron 4 of 8) 171265 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 318.5 chr10 54573075 54573811 + 1 NA intron (NR_134503, intron 2 of 5) intron (NR_134503, intron 2 of 5) 34514 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 487.25-2 chr5 130069664 130070482 + 1 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 165608 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 291.75-9 chr7 2266087 2266720 + 1 NA intron (NM_013321, intron 5 of 10) AluSg|SINE|Alu -8826 NR_106895 102465503 NR_106895 ENSG00000284047 MIR6836 hsa-mir-6836 microRNA 6836 ncRNA 158.75-48 chr20 21799297 21799505 + 1 NA Intergenic Intergenic 93737 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 171.25-57 chr7 105114075 105114432 + 1 NA TTS (NM_018682) TTS (NM_018682) 100048 NM_182931 55904 Hs.592262 NM_018682 ENSG00000005483 KMT2E HDCMC04P|MLL5|NKp44L lysine methyltransferase 2E protein-coding 168.25-44 chr3 88447176 88447514 + 1 NA intron (NM_001368168, intron 2 of 2) L1M5|LINE|L1 108889 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 270.5-10 chr2 74319594 74319982 + 1 NA intron (NM_133478, intron 5 of 30) MER73|LTR|ERVL -4763 NM_021196 57835 Hs.594099 NM_021196 ENSG00000188687 SLC4A5 NBC4|NBCe2 solute carrier family 4 member 5 protein-coding 173.5-73 chr6 81252501 81252775 + 1 NA Intergenic Intergenic 500043 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 266.75-6 chr14 34450875 34451254 + 1 NA intron (NM_138288, intron 1 of 1) intron (NM_138288, intron 1 of 1) 11176 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 244.25-4 chr10 87539545 87539900 + 1 NA intron (NM_001178118, intron 4 of 4) Charlie4z|DNA|hAT-Charlie 31889 NM_001178118 9562 Hs.121260 NM_004897 ENSG00000107789 MINPP1 HIPER1|MINPP2|MIPP multiple inositol-polyphosphate phosphatase 1 protein-coding 276.75-18 chr8 91481107 91481502 + 1 NA Intergenic Intergenic 231985 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 202.5-27 chr19 29829130 29829414 + 1 NA Intergenic Intergenic 17281 NM_001322261 898 Hs.244723 NM_001238 ENSG00000105173 CCNE1 CCNE|pCCNE1 cyclin E1 protein-coding 279.5-12 chr5 171754279 171754610 + 1 NA Intergenic Intergenic -31428 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 303.25-2 chr10 53240048 53240686 + 1 NA Intergenic Intergenic -468667 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 397.5-3 chr14 63148091 63148667 + 1 NA Intergenic L1MA5|LINE|L1 -56064 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 247.75-9 chr14 54313898 54314573 + 1 NA Intergenic Intergenic -82633 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 239.5-11 chr13 40970116 40970531 + 1 NA intron (NM_001370329, intron 2 of 9) intron (NM_001370329, intron 2 of 9) 11959 NM_001145353 1997 Hs.135646 NM_172373 ENSG00000120690 ELF1 EFTUD1|RIA1 E74 like ETS transcription factor 1 protein-coding 224.5-10 chr14 46559481 46559855 + 1 NA Intergenic LTR104_Mam|LTR|Gypsy 88309 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 283.25-3 chr11 26637466 26637891 + 1 NA intron (NM_031418, intron 20 of 26) intron (NM_031418, intron 20 of 26) -65415 NM_001135092 143662 Hs.407152 NM_145650 ENSG00000169550 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 200.5-34 chr2 181519830 181520098 + 1 NA intron (NM_000885, intron 17 of 27) intron (NM_000885, intron 17 of 27) 62578 NM_000885 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 287.5-2 chr1 175350250 175350756 + 1 NA intron (NM_003285, intron 18 of 22) intron (NM_003285, intron 18 of 22) -157516 NM_001319230 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 293.25-7 chr21 27679822 27680163 + 1 NA Intergenic LTR28B|LTR|ERV1 -42387 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 193.25-9 chr10 60627909 60628191 + 1 NA intron (NM_001204403, intron 1 of 43) intron (NM_001204403, intron 1 of 43) -55094 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 166.5-51 chr3 70776341 70776626 + 1 NA Intergenic Intergenic 288441 NM_001244813 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 241.5-12 chr2 158099198 158099633 + 1 NA intron (NM_001135098, intron 2 of 8) intron (NM_001135098, intron 2 of 8) -2455 NM_173355 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 234.75-18 chr4 62926227 62926671 + 1 NA Intergenic Intergenic -764684 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 272.5-14 chr5 26777536 26778110 + 1 NA Intergenic Intergenic 260763 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 255.5 chr1 35171084 35171586 + 1 NA Intergenic AluSx1|SINE|Alu 21810 NM_005066 6421 Hs.355934 NM_005066 ENSG00000116560 SFPQ POMP100|PPP1R140|PSF splicing factor proline and glutamine rich protein-coding 302.5-11 chr7 137036737 137037193 + 1 NA intron (NR_046103, intron 1 of 3) MLT1J2|LTR|ERVL-MaLR 127376 NR_046103 349160 Hs.660713 NR_046103 ENSG00000234352 LOC349160 - uncharacterized LOC349160 ncRNA 316.75-3 chr10 85294009 85294774 + 1 NA Intergenic L1MD2|LINE|L1 -95453 NR_120667 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 343.75-9 chr7 152402646 152403333 + 1 NA intron (NM_170606, intron 1 of 58) L1PA16|LINE|L1 33014 NM_170606 58508 Hs.647120 NM_021230 ENSG00000055609 KMT2C HALR|KLEFS2|MLL3 lysine methyltransferase 2C protein-coding 242.75-27 chr8 37192299 37192728 + 1 NA Intergenic Intergenic 301400 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 247.25-13 chr3 118114268 118114705 + 1 NA Intergenic Intergenic -423561 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 149.5-36 chr18 4167102 4167450 + 1 NA intron (NM_001242761, intron 1 of 11) L1MDb|LINE|L1 -97326 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 249.5-5 chr11 26274789 26275223 + 1 NA intron (NM_001313726, intron 1 of 27) intron (NM_001313726, intron 1 of 27) 13001 NR_132968 105376599 Hs.125537 NR_132968 ENSG00000254819 ANO3-AS1 - ANO3 antisense RNA 1 ncRNA 313.25-3 chr2 28668647 28669301 + 1 NA Intergenic Intergenic 67231 NR_145832 100505774 Hs.595909 NR_145832 ENSG00000226833 LOC100505774 - uncharacterized LOC100505774 ncRNA 206.75-43 chr5 26062379 26062802 + 1 NA Intergenic Intergenic 871637 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 175.25-10 chr11 17872305 17872594 + 1 NA intron (NR_104040, intron 11 of 11) L1ME4b|LINE|L1 136501 NM_001112741 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 351.25-4 chr6 38281733 38282281 + 1 NA intron (NM_052893, intron 9 of 11) intron (NM_052893, intron 9 of 11) -199589 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 368.25-2 chr2 75599224 75599808 + 1 NA Intergenic AluSx|SINE|Alu -29797 NM_032181 84141 Hs.302346 NM_032181 ENSG00000115363 EVA1A FAM176A|TMEM166 eva-1 homolog A, regulator of programmed cell death protein-coding 300.5-16 chr8 77977482 77977819 + 1 NA Intergenic L1PA6|LINE|L1 526953 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 178.5-41 chr2 164045898 164046281 + 1 NA Intergenic MER77B|LTR|ERVL -310081 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 209.25-45 chr8 31308206 31308509 + 1 NA Intergenic L1MEd|LINE|L1 -275001 NM_001323312 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 178.25-9 chr11 102301622 102301946 + 1 NA Intergenic MSTB|LTR|ERVL-MaLR -15700 NM_182962 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 293.75-3 chr16 61562430 61562886 + 1 NA Intergenic L1MC3|LINE|L1 473780 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 229.25-15 chr2 94970186 94970667 + 1 NA Intergenic Intergenic -23084 NR_037597 442028 Hs.611545 NR_037597 ENSG00000259848 LOC442028 - uncharacterized LOC442028 ncRNA 252.25-6 chr15 90590561 90591023 + 1 NA intron (NM_001042574, intron 2 of 14) intron (NM_001042574, intron 2 of 14) 60869 NM_001042574 64784 Hs.567572 NM_022769 ENSG00000140577 CRTC3 TORC-3|TORC3 CREB regulated transcription coactivator 3 protein-coding 235.75-8 chr12 30675070 30675543 + 1 NA intron (NM_006390, intron 6 of 24) intron (NM_006390, intron 6 of 24) 1938 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 303.75-10 chr8 129134650 129135081 + 1 NA Intergenic Intergenic 106375 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 146.5-44 chr18 26129134 26129512 + 1 NA Intergenic Tigger4|DNA|TcMar-Tigger -4546 NM_001025096 143471 Hs.464813 NM_144662 ENSG00000154611 PSMA8 PSMA7L proteasome subunit alpha 8 protein-coding 376.75 chr11 105388462 105389140 + 1 NA Intergenic L1ME1|LINE|L1 -221272 NM_001077243 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 207.75-52 chr8 133606246 133606486 + 1 NA Intergenic Intergenic -34479 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 165.75-114 chr8 135023485 135023754 + 1 NA Intergenic Intergenic 173684 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 176.75-48 chr22 26819803 26820025 + 1 NA Intergenic MER1B|DNA|hAT-Charlie -40297 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 302.5-3 chr1 194197778 194198190 + 1 NA Intergenic Intergenic 893239 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 277.75-4 chr11 107509210 107509545 + 1 NA intron (NM_138775, intron 11 of 11) L1MB3|LINE|L1 -51531 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19 like cell cycle control factor 2 protein-coding 240.25-15 chr3 11703243 11703528 + 1 NA intron (NM_014667, intron 1 of 5) intron (NM_014667, intron 1 of 5) 17154 NM_014667 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 233.5-24 chr4 127383691 127384252 + 1 NA Intergenic Intergenic -248986 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 168.5-14 chr10 82056810 82057133 + 1 NA intron (NR_163253, intron 2 of 10) L1MEd|LINE|L1 175949 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 171.75-62 chr5 43872073 43872292 + 1 NA Intergenic Intergenic -268952 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 436.5-2 chr14 66111938 66112856 + 1 NA Intergenic Intergenic -373974 NR_110307 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 330.5-4 chr2 63311188 63311675 + 1 NA intron (NR_148704, intron 14 of 18) intron (NR_148704, intron 14 of 18) 126576 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 192.5-34 chr3 35279627 35279993 + 1 NA intron (NR_110817, intron 2 of 3) L1PA11|LINE|L1 114213 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 227.75-2 chr1 189480182 189480739 + 1 NA Intergenic Intergenic 995550 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 188.5-32 chr22 42456513 42456752 + 1 NA Intergenic L1MD|LINE|L1 -18646 NM_001371362 228.75-8 chr14 70452155 70452562 + 1 NA intron (NM_003813, intron 1 of 1) intron (NM_003813, intron 1 of 1) 184 NM_003813 8747 Hs.178748 NM_003813 ENSG00000139985 ADAM21 ADAM 21|ADAM31 ADAM metallopeptidase domain 21 protein-coding 233.75-8 chr15 60161880 60162211 + 1 NA Intergenic Intergenic 157734 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 344.25-2 chr12 47687395 47687815 + 1 NA intron (NM_024604, intron 8 of 16) intron (NM_024604, intron 8 of 16) 18425 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 236.75-13 chr2 168611730 168612178 + 1 NA intron (NM_001256126, intron 3 of 10) intron (NM_001256126, intron 3 of 10) 29011 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 363.75-7 chr5 29566068 29566667 + 1 NA Intergenic Tigger9b|DNA|TcMar-Tigger -170391 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 301.25-5 chr15 83089129 83089687 + 1 NA Intergenic AluSq|SINE|Alu -18237 NM_001330385 53346 Hs.513094 NM_023003 ENSG00000136404 TM6SF1 - transmembrane 6 superfamily member 1 protein-coding 179.5-18 chr13 72933975 72934294 + 1 NA intron (NR_146206, intron 14 of 16) intron (NR_146206, intron 14 of 16) -120842 NM_001286818 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 239.5-16 chr15 98778654 98779107 + 1 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) -5546 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 252.5-14 chr20 37747908 37748305 + 1 NA intron (NM_001281495, intron 5 of 16) intron (NM_001281495, intron 5 of 16) 54076 NM_030877 56259 Hs.472667 NM_030877 ENSG00000132792 CTNNBL1 C20orf33|NAP|P14L|PP8304|dJ633O20.1 catenin beta like 1 protein-coding 260.5-2 chr11 38188939 38189384 + 1 NA Intergenic Intergenic 250560 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 166.75-4 chr1 190725587 190725901 + 1 NA intron (NR_033922, intron 1 of 4) L1MC2|LINE|L1 100854 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 235.25-18 chr7 1352354 1352643 + 1 NA Intergenic Intergenic 106972 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 307.5-2 chr19 44291004 44291379 + 1 NA intron (NM_004234, intron 4 of 4) L1M5|LINE|L1 13834 NM_004234 9310 Hs.613424 NM_004234 ENSG00000159917 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 190.5-25 chr18 53403647 53403929 + 1 NA intron (NM_005215, intron 19 of 28) intron (NM_005215, intron 19 of 28) -164659 NR_110798 102724651 Hs.123442 NR_110798 ENSG00000263438 LINC01919 - long intergenic non-protein coding RNA 1919 ncRNA 313.5-7 chr7 37849925 37850440 + 1 NA intron (NM_016616, intron 2 of 17) intron (NM_016616, intron 2 of 17) 1585 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 198.5-54 chr8 69906350 69906574 + 1 NA Intergenic L4_A_Mam|LINE|RTE-X -71484 NM_030958 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 251.75-17 chr3 89080233 89080511 + 1 NA Intergenic MLT1G1|LTR|ERVL-MaLR -27249 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 257.5-11 chr19 11042291 11042609 + 1 NA intron (NM_001128846, intron 28 of 32) intron (NM_001128846, intron 28 of 32) -46912 NM_000527 3949 Hs.213289 NM_000527 ENSG00000130164 LDLR FH|FHC|LDLCQ2 low density lipoprotein receptor protein-coding 188.5-5 chr1 199440256 199440673 + 1 NA Intergenic L1MA3|LINE|L1 291866 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 163.75-48 chr4 36347086 36347363 + 1 NA non-coding (NR_160267, exon 10 of 10) non-coding (NR_160267, exon 10 of 10) 65608 NM_001136536 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 257.25-8 chr10 87695881 87696368 + 1 NA intron (NM_001015880, intron 1 of 12) intron (NM_001015880, intron 1 of 12) 36246 NM_004670 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 323.5-2 chr10 33789171 33789705 + 1 NA Intergenic L1ME3G|LINE|L1 -16758 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 342.25 chr10 31354788 31355201 + 1 NA intron (NM_001323675, intron 1 of 6) Kanga11a|DNA|TcMar-Tc2 33334 NM_001323675 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 260.25-16 chr3 168359498 168360004 + 1 NA intron (NR_021485, intron 3 of 15) intron (NR_021485, intron 3 of 15) 110229 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 270.75-3 chr1 192042424 192042940 + 1 NA Intergenic Intergenic -115780 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 214.25-25 chr4 107324004 107324404 + 1 NA Intergenic L1ME1|LINE|L1 -287891 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 189.75-47 chr3 58269506 58269836 + 1 NA intron (NM_001320126, intron 5 of 9) intron (NM_001320126, intron 5 of 9) 31879 NM_001320126 57406 Hs.476454 NM_020676 ENSG00000163686 ABHD6 - abhydrolase domain containing 6 protein-coding 257.5-4 chr11 37726508 37726862 + 1 NA Intergenic L1MA9|LINE|L1 -211916 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 279.5-2 chr11 36862723 36863294 + 1 NA Intergenic L2a|LINE|L2 -264729 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 490.75-2 chr7 8231325 8231993 + 1 NA intron (NM_001350836, intron 3 of 14) MIRb|SINE|MIR 30393 NM_001350825 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 267.75-11 chr3 182527013 182527375 + 1 NA Intergenic Intergenic -20070 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 193.5-78 chr8 135533433 135533782 + 1 NA intron (NM_006558, intron 2 of 8) intron (NM_006558, intron 2 of 8) 76151 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 223.75-26 chr8 140316457 140316748 + 1 NA intron (NM_001160372, intron 9 of 22) L1MA6|LINE|L1 141142 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 203.25-47 chr9 128952557 128952917 + 1 NA intron (NM_015354, intron 2 of 43) AluSx1|SINE|Alu -5004 NM_014908 22845 Hs.531563 NM_014908 ENSG00000175283 DOLK CDG1M|DK|DK1|SEC59|TMEM15 dolichol kinase protein-coding 228.25-33 chr8 88864821 88865222 + 1 NA Intergenic Intergenic -537538 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 293.75-13 chr6 72021029 72021347 + 1 NA intron (NM_001350411, intron 2 of 3) intron (NM_001350411, intron 2 of 3) 134485 NM_014989 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 174.25-51 chr5 13001880 13002132 + 1 NA intron (NR_147005, intron 2 of 4) intron (NR_147005, intron 2 of 4) 30880 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 343.75-11 chr9 68849286 68849928 + 1 NA intron (NM_003558, intron 4 of 15) AluJb|SINE|Alu 69542 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 148.75-33 chr15 71075772 71075920 + 1 NA Intergenic L1MEc|LINE|L1 -65603 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 176.5-3 chr1 115252578 115252833 + 1 NA Intergenic L1ME3D|LINE|L1 -30329 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 288.5-7 chr2 206774538 206774853 + 1 NA intron (NM_001136193, intron 7 of 11) intron (NM_001136193, intron 7 of 11) -8539 NR_036078 100423002 NR_036078 ENSG00000263468 MIR3130-2 MIR3130-4|mir-3130-2 microRNA 3130-2 ncRNA 283.5-16 chr5 45710901 45711259 + 1 NA Intergenic LTR88b|LTR|Gypsy? -14700 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 361.75 chr14 67105124 67105720 + 1 NA intron (NM_001024218, intron 12 of 21) L1M2a|LINE|L1 -84018 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 154.75-64 chr3 161125458 161125626 + 1 NA Intergenic Intergenic -20170 NM_001349158 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 257.5-7 chr14 67002805 67003301 + 1 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -186387 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 154.75-74 chr4 58047072 58047258 + 1 NA Intergenic L2c|LINE|L2 489163 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 215.5-32 chr20 13757905 13758217 + 1 NA intron (NM_001276380, intron 9 of 13) L3|LINE|CR1 26825 NM_016649 51575 Hs.369284 NM_016649 ENSG00000089048 ESF1 ABTAP|C20orf6|HDCMC28P|bA526K24.1 ESF1 nucleolar pre-rRNA processing protein homolog protein-coding 331.5-3 chr4 17172275 17172709 + 1 NA intron (NR_125919, intron 4 of 5) intron (NR_125919, intron 4 of 5) 13565 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 304.75-6 chr9 27512139 27512749 + 1 NA intron (NM_024761, intron 1 of 3) intron (NM_024761, intron 1 of 3) -11870 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 243.25-3 chr1 161946702 161947196 + 1 NA intron (NM_007348, intron 15 of 15) intron (NM_007348, intron 15 of 15) 77516 NM_001297713 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 232.75-6 chr12 116243189 116243549 + 1 NA intron (NM_015335, intron 1 of 30) MER85|DNA|PiggyBac 33817 NM_015335 23389 Hs.603766 NM_015335 ENSG00000123066 MED13L MRFACD|PROSIT240|THRAP2|TRAP240L mediator complex subunit 13L protein-coding 281.5-20 chr2 57401541 57402081 + 1 NA Intergenic L1ME3D|LINE|L1 -505840 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 228.5-46 chr8 111831499 111831969 + 1 NA Intergenic MIRc|SINE|MIR 455095 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 229.25-10 chr17 55516967 55517403 + 1 NA Intergenic MamGypLTR2c|LTR|Gypsy -95350 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 161.5-67 chr4 46041898 46042141 + 1 NA intron (NM_173536, intron 8 of 8) intron (NM_173536, intron 8 of 8) 82035 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 321.5-2 chr10 83534975 83535468 + 1 NA Intergenic Intergenic 141868 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 315.75-2 chr16 62523424 62523935 + 1 NA Intergenic L1ME1|LINE|L1 -487241 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 233.25-31 chr8 71475923 71476416 + 1 NA intron (NM_001370334, intron 2 of 19) intron (NM_001370334, intron 2 of 19) 71535 NM_172059 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 163.25-61 chr5 133068668 133068919 + 1 NA intron (NM_002154, intron 3 of 18) intron (NM_002154, intron 3 of 18) 16780 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 325.25-8 chr9 29026425 29027036 + 1 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) -137775 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 301.75-8 chr5 5262103 5262647 + 1 NA intron (NM_139056, intron 17 of 22) Kanga1b|DNA|TcMar-Tc2 122045 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 367.75 chr1 244591339 244591750 + 1 NA intron (NM_001130957, intron 14 of 21) MER5A|DNA|hAT-Charlie -61504 NR_123736 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 167.5-77 chr5 87579213 87579599 + 1 NA Intergenic MER21C|LTR|ERVL -82636 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 297.5-13 chr6 151368634 151369117 + 1 NA intron (NM_020861, intron 2 of 2) AluSx1|SINE|Alu 22684 NM_020861 57621 Hs.520073 NM_020861 ENSG00000181472 ZBTB2 ZNF437 zinc finger and BTB domain containing 2 protein-coding 183.25-30 chr16 71438416 71438796 + 1 NA intron (NM_001367365, intron 1 of 9) AluSx|SINE|Alu 3448 NM_001367365 176.25-64 chr8 78628506 78628806 + 1 NA Intergenic Intergenic -37433 NM_001362969 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 233.5-23 chr4 57992617 57992959 + 1 NA Intergenic Intergenic 543540 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 172.5-23 chr14 44859768 44859967 + 1 NA Intergenic L1MA5A|LINE|L1 -37408 NM_001017923 122525 Hs.82098 NM_001017923 ENSG00000179476 C14orf28 DRIP-1|DRIP1|c14_5270 chromosome 14 open reading frame 28 protein-coding 228.5-20 chr14 66700607 66701007 + 1 NA intron (NM_001024218, intron 2 of 21) AluSc|SINE|Alu 193400 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 190.75-32 chr2 101765638 101765944 + 1 NA intron (NM_145686, intron 2 of 30) L1ME3Cz|LINE|L1 68084 NM_145687 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 225.5-6 chr10 68579947 68580305 + 1 NA intron (NM_030625, intron 2 of 11) AluSp|SINE|Alu 19789 NM_030625 80312 Hs.258855 NM_030625 ENSG00000138336 TET1 CXXC6|LCX|bA119F7.1 tet methylcytosine dioxygenase 1 protein-coding 196.5-41 chr5 22317293 22317639 + 1 NA intron (NM_001364104, intron 2 of 13) (AT)n|Simple_repeat|Simple_repeat -103616 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 176.75-74 chr6 47284628 47284865 + 1 NA intron (NM_014452, intron 2 of 5) intron (NM_014452, intron 2 of 5) 25159 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 266.25-15 chr5 167918680 167919120 + 1 NA intron (NM_001368145, intron 2 of 26) intron (NM_001368145, intron 2 of 26) 163971 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 189.5-13 chr11 30442754 30443050 + 1 NA intron (NM_001584, intron 3 of 5) AluJo|SINE|Alu 119798 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 156.25-65 chr5 10104442 10104699 + 1 NA Intergenic MIR3|SINE|MIR 145318 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 209.25-53 chr9 129249037 129249261 + 1 NA Intergenic L1MB7|LINE|L1 -33267 NR_121587 101929331 Hs.522428 NR_121587 ENSG00000224307 LOC101929331 - uncharacterized LOC101929331 ncRNA 281.5-26 chr6 52058746 52059222 + 1 NA intron (NM_138694, intron 15 of 66) intron (NM_138694, intron 15 of 66) 28629 NM_138694 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 221.25-30 chr8 26756181 26756679 + 1 NA 3' UTR (NM_001322502, exon 2 of 2) 3' UTR (NM_001322502, exon 2 of 2) 109225 NM_033303 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 242.5-9 chr14 42866666 42867187 + 1 NA Intergenic Intergenic 1260070 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 360.5-2 chr9 71439828 71440675 + 1 NA intron (NM_001366143, intron 1 of 25) MIRb|SINE|MIR 6720 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 323.5-10 chr8 136716108 136716598 + 1 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 185555 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 185.25-10 chr11 57055130 57055435 + 1 NA Intergenic Intergenic 17748 NR_036445 219525 Hs.554519 NR_036445 ENSG00000283307 OR5AK4P PJCG3 olfactory receptor family 5 subfamily AK member 4 pseudogene pseudo 309.25-10 chr9 116648480 116648895 + 1 NA intron (NM_014010, intron 16 of 21) (TTAG)n|Simple_repeat|Simple_repeat 38528 NM_198186 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 311.5-9 chr4 62115167 62115560 + 1 NA intron (NR_110595, intron 6 of 7) intron (NR_110595, intron 6 of 7) 46402 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 255.25-25 chr8 29037009 29037455 + 1 NA intron (NM_001324384, intron 6 of 10) intron (NM_001324384, intron 6 of 10) 145918 NM_001324382 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 243.75-7 chr19 29945612 29946103 + 1 NA intron (NR_045557, intron 1 of 9) intron (NR_045557, intron 1 of 9) 3618 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 255.25 chr1 45532547 45532940 + 1 NA Intergenic AluJo|SINE|Alu -9853 NM_001202431 5052 Hs.180909 NM_002574 ENSG00000117450 PRDX1 MSP23|NKEF-A|NKEFA|PAG|PAGA|PAGB|PRX1|PRXI|TDPX2 peroxiredoxin 1 protein-coding 266.5-14 chr4 154376668 154377123 + 1 NA intron (NM_001358235, intron 2 of 19) L1MC5a|LINE|L1 114904 NM_001358235 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 264.5-22 chr6 71906030 71906390 + 1 NA intron (NM_001350412, intron 1 of 2) intron (NM_001350412, intron 1 of 2) 19507 NM_014989 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 200.5-44 chr4 34894690 34894973 + 1 NA Intergenic Intergenic -625084 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 187.25-72 chrX 95706216 95706665 + 1 NA Intergenic HAL1|LINE|L1 631462 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 340.5-2 chr6 50954757 50955278 + 1 NA Intergenic MER3|DNA|hAT-Charlie 136146 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 176.75-58 chr3 160733828 160734048 + 1 NA Intergenic Intergenic -22293 NM_139245 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 199.5-35 chr4 15230365 15230772 + 1 NA intron (NR_125911, intron 2 of 5) MamRTE1|LINE|RTE-BovB -109420 NM_001135170 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 165.5-10 chr1 175015741 175015942 + 1 NA intron (NR_037606, intron 2 of 2) intron (NR_037606, intron 2 of 2) 7584 NM_022100 63931 Hs.654858 NM_022100 ENSG00000120333 MRPS14 COXPD38|DJ262D12.2|HSMRPS14|MRP-S14|S14mt mitochondrial ribosomal protein S14 protein-coding 406.75-2 chrX 80239237 80239983 + 1 NA intron (NR_110646, intron 5 of 5) intron (NR_110646, intron 5 of 5) 95708 NR_110646 101060146 Hs.546064 NR_110646 ENSG00000278530 CHMP1B2P - charged multivesicular body protein 1B2, pseudogene pseudo 213.25-7 chr11 22386976 22387267 + 1 NA Intergenic Intergenic 48740 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 146.75-2 chr1 33013081 33013285 + 1 NA exon (NM_001319140, exon 7 of 7) exon (NM_001319140, exon 7 of 7) 23700 NM_001199199 204 Hs.470907 NM_001625 ENSG00000004455 AK2 ADK2 adenylate kinase 2 protein-coding 243.5-19 chr5 55273370 55273686 + 1 NA intron (NR_144324, intron 16 of 26) L1MC5a|LINE|L1 34166 NM_019030 54505 Hs.593268 NM_019030 ENSG00000067248 DHX29 DDX29 DExH-box helicase 29 protein-coding 173.25-74 chr8 76589426 76589719 + 1 NA Intergenic Intergenic -91675 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 162.5-93 chr9 88519198 88519400 + 1 NA Intergenic Intergenic -15802 NM_001161625 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2|RdCVF2L nucleoredoxin like 2 protein-coding 289.75-11 chr19 963810 964280 + 1 NA intron (NM_005224, intron 4 of 8) intron (NM_005224, intron 4 of 8) -20283 NM_024100 57418 Hs.325321 NM_024100 ENSG00000065268 WDR18 Ipi3|R32184_1 WD repeat domain 18 protein-coding 209.5-16 chr14 69854339 69854690 + 1 NA Intergenic Intergenic -24902 NM_022137 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 265.5-9 chr18 9119894 9120284 + 1 NA intron (NM_021074, intron 4 of 7) intron (NM_021074, intron 4 of 7) 16631 NR_110771 101927275 Hs.656442 NR_110771 ENSG00000266053 NDUFV2-AS1 - NDUFV2 antisense RNA 1 ncRNA 365.5-4 chr4 53830138 53830662 + 1 NA Intergenic Intergenic 134499 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 214.5-36 chr4 61923442 61923698 + 1 NA intron (NM_001322246, intron 12 of 25) L2c|LINE|L2 238195 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 185.75-33 chr18 80194288 80194573 + 1 NA intron (NM_032510, intron 2 of 2) MIRb|SINE|MIR 46506 NR_028339 100130522 Hs.352602 NM_001145731 ENSG00000267270 PARD6G-AS1 - PARD6G antisense RNA 1 ncRNA 321.75-6 chr8 129348131 129348614 + 1 NA Intergenic L1MEf|LINE|L1 -107132 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 167.75-50 chr2 192307026 192307290 + 1 NA Intergenic Intergenic -112225 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 154.75 chr1 27914575 27914867 + 1 NA promoter-TSS (NM_001355129) promoter-TSS (NM_001355129) 76 NM_001355129 6118 Hs.79411 NM_002946 ENSG00000117748 RPA2 REPA2|RP-A p32|RP-A p34|RPA32 replication protein A2 protein-coding 173.75-26 chr16 4093898 4094177 + 1 NA intron (NM_001116, intron 2 of 10) intron (NM_001116, intron 2 of 10) 22405 NM_001116 115 Hs.391860 NM_001116 ENSG00000162104 ADCY9 AC9|ACIX adenylate cyclase 9 protein-coding 288.5-16 chr4 181850365 181850765 + 1 NA Intergenic Intergenic -20592 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 188.5-74 chr9 2918266 2918562 + 1 NA Intergenic Intergenic -74319 NM_014878 9933 Hs.493309 NM_014878 ENSG00000080608 PUM3 HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5 pumilio RNA binding family member 3 protein-coding 182.75-75 chr9 11283282 11283527 + 1 NA Intergenic Intergenic 670198 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 231.75-5 chr12 13528242 13528839 + 1 NA Intergenic Intergenic -151795 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 276.5-6 chr14 45680096 45680432 + 1 NA Intergenic Intergenic 35338 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 149.75-7 chr1 191163179 191163516 + 1 NA Intergenic Intergenic 65151 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 190.25-30 chr3 193080659 193081127 + 1 NA Intergenic MER115|DNA|hAT-Tip100 -160329 NM_001366112 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 189.25-20 chr17 61579927 61580425 + 1 NA Intergenic Intergenic 11043 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 391.5-5 chr4 67090939 67091432 + 1 NA Intergenic Intergenic 330815 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 300.75-3 chr10 98176624 98177043 + 1 NA intron (NM_001256621, intron 3 of 7) L1MD|LINE|L1 42176 NM_001351015 27291 Hs.419800 NM_014472 ENSG00000166024 R3HCC1L C10orf28|GIDRP86|GIDRP88|PSORT R3H domain and coiled-coil containing 1 like protein-coding 261.5-3 chr12 22316238 22316566 + 1 NA intron (NM_003034, intron 1 of 4) L1M5|LINE|L1 18312 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 197.25-7 chr1 205161521 205161858 + 1 NA intron (NM_199462, intron 6 of 11) intron (NM_199462, intron 6 of 11) -39711 NM_001193272 5929 Hs.519230 NM_005057 ENSG00000117222 RBBP5 RBQ3|SWD1 RB binding protein 5, histone lysine methyltransferase complex subunit protein-coding 363.5-3 chr8 48218305 48218940 + 1 NA Intergenic Intergenic 210191 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 192.25-50 chr5 26353233 26353542 + 1 NA Intergenic L1MA4A|LINE|L1 685199 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 181.5-70 chr8 126442396 126442734 + 1 NA Intergenic AluSx1|SINE|Alu 115913 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 297.25 chr11 101803143 101803542 + 1 NA Intergenic Intergenic -111668 NM_001363543 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 252.5-10 chr2 35210799 35211096 + 1 NA Intergenic L1MCa|LINE|L1 -260458 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 148.25-25 chr13 32293443 32293658 + 1 NA intron (NM_023037, intron 59 of 60) intron (NM_023037, intron 59 of 60) 18404 NM_001136571 646799 Hs.569254 NM_001136571 ENSG00000189167 ZAR1L Z3CXXC7|ZAR2 zygote arrest 1 like protein-coding 159.5-25 chr15 56488844 56489292 + 1 NA Intergenic Intergenic -23931 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 324.25-3 chr20 4389905 4390406 + 1 NA Intergenic L1MD2|LINE|L1 -140868 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 166.5-85 chr7 111850926 111851165 + 1 NA intron (NM_001363540, intron 23 of 52) L1M4|LINE|L1 42540 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 360.25 chr2 115343184 115343711 + 1 NA promoter-TSS (NM_001321913) promoter-TSS (NM_001321913) -368 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 196.75-14 chr14 48583740 48584194 + 1 NA Intergenic MER44B|DNA|TcMar-Tigger -788953 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 164.5-52 chr3 31331179 31331433 + 1 NA Intergenic L1MA2|LINE|L1 -169519 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 146.5-60 chr2 192833071 192833339 + 1 NA Intergenic MLT1H1|LTR|ERVL-MaLR 83360 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 207.25-42 chr4 116771738 116772135 + 1 NA Intergenic Intergenic 313640 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 373.5 chr1 101812903 101813417 + 1 NA intron (NR_110211, intron 4 of 6) intron (NR_110211, intron 4 of 6) 33920 NM_001288821 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 147.75-6 chr1 113398648 113398810 + 1 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 8214 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 208.5-59 chr8 119035948 119036229 + 1 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) -31159 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 197.5-25 chr17 43179177 43179553 + 1 NA intron (NM_005899, intron 3 of 20) intron (NM_005899, intron 3 of 20) 8151 NM_005899 4077 Hs.277721 NM_005899 ENSG00000188554 NBR1 1A1-3B|IAI3B|M17S2|MIG19 NBR1 autophagy cargo receptor protein-coding 175.5-52 chr2 183933755 183934216 + 1 NA Intergenic Intergenic -444990 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 230.25-13 chr15 57260593 57260975 + 1 NA intron (NM_207038, intron 15 of 19) intron (NM_207038, intron 15 of 19) 17873 NR_145748 109616990 NR_145748 ENSG00000239035 SNORD13D - small nucleolar RNA, C/D box 13D snoRNA 195.75-31 chr2 13860374 13860731 + 1 NA Intergenic Intergenic 540406 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 279.25-3 chr12 4682656 4683288 + 1 NA intron (NM_005002, intron 9 of 10) AluJo|SINE|Alu 33858 NM_005002 4704 Hs.75227 NM_005002 ENSG00000139180 NDUFA9 CC6|CI-39k|CI39k|COQ11|MC1DN26|NDUFS2L|SDR22E1 NADH:ubiquinone oxidoreductase subunit A9 protein-coding 219.75-19 chr2 255690 256007 + 1 NA intron (NM_001282682, intron 1 of 10) intron (NM_001282682, intron 1 of 10) 492 NM_001282687 26751 Hs.515951 NM_015677 ENSG00000035115 SH3YL1 RAY SH3 and SYLF domain containing 1 protein-coding 240.75-19 chr5 60346328 60346643 + 1 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) 26178 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 268.5-5 chr10 62177115 62177579 + 1 NA Intergenic L1MEc|LINE|L1 91497 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 243.5-14 chr2 199597151 199597474 + 1 NA Intergenic MLT1A|LTR|ERVL-MaLR -10756 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 198.75-22 chr14 73035378 73035718 + 1 NA Intergenic AluJr|SINE|Alu -8442 NM_001281734 53349 Hs.335106 NM_021260 ENSG00000165861 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger FYVE-type containing 1 protein-coding 189.25-36 chr3 116339089 116339338 + 1 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -20811 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 239.75-19 chr5 28518648 28519213 + 1 NA Intergenic Intergenic -231265 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 245.25-14 chr22 33913066 33913499 + 1 NA intron (NM_001362949, intron 1 of 15) intron (NM_001362949, intron 1 of 15) 7146 NM_004737 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 147.5-81 chr5 117848546 117848810 + 1 NA intron (NR_104997, intron 1 of 2) AluJr|SINE|Alu 118317 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 286.75-3 chr16 69633758 69634156 + 1 NA intron (NM_138713, intron 3 of 14) L1MA5A|LINE|L1 67991 NM_138713 10725 Hs.371987 NM_006599 ENSG00000102908 NFAT5 NF-AT5|NFATL1|NFATZ|OREBP|TONEBP nuclear factor of activated T cells 5 protein-coding 237.75-6 chr12 42091238 42091750 + 1 NA intron (NM_173601, intron 7 of 7) intron (NM_173601, intron 7 of 7) 53380 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 271.25-6 chr14 38213475 38213803 + 1 NA TTS (NM_001049) TTS (NM_001049) 5735 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 285.25-4 chr4 115378744 115379110 + 1 NA Intergenic Intergenic -265307 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 298.5-3 chr14 47735540 47736037 + 1 NA Intergenic Intergenic 25316 NR_037503 100500919 NR_037503 ENSG00000263945 MIR548Y - microRNA 548y ncRNA 278.75 chr1 83541343 83541696 + 1 NA Intergenic Intergenic 95465 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 149.5-9 chr10 15759767 15759950 + 1 NA Intergenic L2a|LINE|L2 -39523 NM_001291494 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 376.25 chr15 68145197 68145804 + 1 NA intron (NM_016166, intron 4 of 13) MER103C|DNA|hAT-Charlie 60610 NM_001286694 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 355.5-2 chr13 81832107 81832719 + 1 NA Intergenic MER39|LTR|ERV1 -605430 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 213.5-34 chr5 3365344 3365693 + 1 NA Intergenic Intergenic -87298 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 198.75-44 chr6 140699810 140700135 + 1 NA Intergenic Intergenic 16158 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 228.25-31 chr8 26776291 26776771 + 1 NA intron (NM_033302, intron 1 of 2) MIR3|SINE|MIR 89124 NM_033303 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 218.75-3 chr1 186004607 186004896 + 1 NA intron (NM_031935, intron 29 of 106) L1ME3G|LINE|L1 270360 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 229.5-36 chr6 118559726 118560150 + 1 NA 3' UTR (NM_002667, exon 2 of 2) 3' UTR (NM_002667, exon 2 of 2) 11642 NM_002667 5350 Hs.170839 NM_002667 ENSG00000198523 PLN CMD1P|CMH18|PLB phospholamban protein-coding 166.5-10 chr12 1150428 1150737 + 1 NA intron (NR_027948, intron 7 of 19) intron (NR_027948, intron 7 of 19) 122834 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 429.5 chr8 90276449 90277363 + 1 NA intron (NR_051989, intron 2 of 3) MIRb|SINE|MIR 55418 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 216.5-36 chr6 149187594 149187896 + 1 NA Intergenic L1PB1|LINE|L1 -30179 NR_125861 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 160.5-4 chr1 49075550 49075838 + 1 NA intron (NM_001323575, intron 4 of 12) L4_A_Mam|LINE|RTE-X -181717 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 180.5-75 chr9 25018041 25018306 + 1 NA Intergenic Intergenic -472276 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 294.75-9 chr4 114954694 114955080 + 1 NA intron (NM_022569, intron 4 of 13) MSTA|LTR|ERVL-MaLR 158733 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 171.5-15 chr10 90344242 90344460 + 1 NA Intergenic Intergenic 196454 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 343.25-3 chr2 108171959 108172505 + 1 NA intron (NR_131251, intron 3 of 4) intron (NR_131251, intron 3 of 4) 45609 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 147.5-24 chr13 82743135 82743323 + 1 NA Intergenic L2a|LINE|L2 1139164 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 148.25-75 chr6 49484924 49485185 + 1 NA intron (NM_018132, intron 6 of 8) intron (NM_018132, intron 6 of 8) -14869 NM_001010904 389396 Hs.585172 NM_001010904 ENSG00000203972 GLYATL3 C6orf140|bA28H17.2 glycine-N-acyltransferase like 3 protein-coding 171.75-65 chr5 127873142 127873438 + 1 NA intron (NM_001317938, intron 5 of 6) intron (NM_001317938, intron 5 of 6) 169901 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 313.75 chr1 52421818 52422325 + 1 NA Intergenic Intergenic 17469 NM_032864 84950 Hs.5301 NM_032284 ENSG00000134748 PRPF38A PRP38A|Prp38 pre-mRNA processing factor 38A protein-coding 271.25-9 chr2 224313730 224314019 + 1 NA Intergenic Intergenic 88120 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 235.5-18 chr2 123569085 123569347 + 1 NA Intergenic Intergenic 455958 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 235.25-14 chr21 25302423 25302761 + 1 NA Intergenic Intergenic 129109 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 165.75-3 chr1 51203379 51203687 + 1 NA intron (NR_147076, intron 1 of 1) intron (NR_147076, intron 1 of 1) 31563 NR_147076 105378716 NR_147076 ENSG00000203356 LINC01562 - long intergenic non-protein coding RNA 1562 ncRNA 174.25-44 chr3 194233481 194233854 + 1 NA intron (NR_125403, intron 1 of 2) intron (NR_125403, intron 1 of 2) -13981 NR_125402 101929337 Hs.548086 NR_125402 ENSG00000238097 LINC02037 - long intergenic non-protein coding RNA 2037 ncRNA 293.25-4 chr17 56181488 56182170 + 1 NA intron (NM_153228, intron 1 of 16) Tigger1|DNA|TcMar-Tigger 28354 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 322.5-5 chr16 11867262 11867663 + 1 NA TTS (NM_001130006) TTS (NM_001130006) -15920 NM_015659 26156 Hs.401842 NM_015659 ENSG00000171490 RSL1D1 CSIG|L12|PBK1|UTP30 ribosomal L1 domain containing 1 protein-coding 292.75 chr10 56791019 56791680 + 1 NA Intergenic Intergenic -430076 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 231.75-27 chr6 132078390 132078656 + 1 NA Intergenic MIR|SINE|MIR 36740 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 225.25-14 chr17 70716902 70717152 + 1 NA Intergenic Intergenic 485152 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 250.75-3 chr1 232047925 232048287 + 1 NA Intergenic AluSq|SINE|Alu 122272 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 314.75-9 chr8 135322088 135322665 + 1 NA Intergenic Intergenic 88245 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 214.5-53 chr9 102993466 102993935 + 1 NA Intergenic Intergenic -1633 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 158.75-4 chr10 13604373 13604745 + 1 NA intron (NM_003675, intron 3 of 9) intron (NM_003675, intron 3 of 9) 17594 NM_003675 8559 Hs.660649 NM_003675 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 257.75-22 chr6 148200880 148201284 + 1 NA Intergenic Intergenic -71246 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 280.5-2 chr14 70999943 71000667 + 1 NA intron (NM_014982, intron 8 of 35) L1ME4a|LINE|L1 92846 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 275.5-9 chr17 16106166 16106587 + 1 NA intron (NM_001190440, intron 18 of 44) Charlie24|DNA|hAT-Charlie 46820 NR_145787 109623477 NR_145787 SNORD163 - small nucleolar RNA, C/D box 163 snoRNA 183.75-59 chr3 80093162 80093497 + 1 NA Intergenic Intergenic -325331 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 381.5 chr1 102370026 102370666 + 1 NA Intergenic L2a|LINE|L2 -373112 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 216.25-27 chr5 124038811 124039183 + 1 NA Intergenic L2c|LINE|L2 399523 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 430.5-2 chr6 66508127 66508875 + 1 NA Intergenic Intergenic 720622 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 322.75-3 chr5 42610054 42610681 + 1 NA intron (NM_001242460, intron 1 of 7) intron (NM_001242460, intron 1 of 7) 44503 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 192.75-49 chr4 141956274 141956614 + 1 NA Intergenic Intergenic 319861 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 342.25-4 chr20 51600179 51600623 + 1 NA 3' UTR (NM_006045, exon 28 of 28) 3' UTR (NM_006045, exon 28 of 28) -37562 NM_001258292 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 167.5-38 chr2 35995635 35995962 + 1 NA Intergenic Intergenic 359772 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 326.25-5 chr6 49479402 49479759 + 1 NA intron (NM_018132, intron 5 of 8) L1PA15|LINE|L1 16210 NM_018132 55166 Hs.88663 NM_018132 ENSG00000031691 CENPQ C6orf139|CENP-Q centromere protein Q protein-coding 246.75-16 chr5 102063881 102064438 + 1 NA Intergenic (ATATAT)n|Simple_repeat|Simple_repeat 232125 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 215.5-25 chr2 32303866 32304241 + 1 NA intron (NM_032312, intron 5 of 5) intron (NM_032312, intron 5 of 5) 26149 NM_032312 84272 Hs.468099 NM_032312 ENSG00000119820 YIPF4 FinGER4|Nbla11189 Yip1 domain family member 4 protein-coding 322.5-11 chr4 97445198 97445724 + 1 NA intron (NR_102713, intron 3 of 5) MER33|DNA|hAT-Charlie 78535 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 151.25-16 chr11 108324615 108324898 + 1 NA intron (NM_001351834, intron 46 of 63) intron (NM_001351834, intron 46 of 63) 101227 NM_001351836 472 Hs.367437 NM_000051 ENSG00000149311 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 204.5-7 chr1 218877413 218877689 + 1 NA intron (NR_031644, intron 6 of 6) intron (NR_031644, intron 6 of 6) 40960 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 400.25-3 chr5 114352935 114353513 + 1 NA Intergenic L1MB8|LINE|L1 -8846 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 171.25-24 chr16 50515278 50515466 + 1 NA Intergenic L1MA9|LINE|L1 -33024 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 227.75-35 chr8 116420902 116421282 + 1 NA Intergenic L1ME1|LINE|L1 -96033 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 156.75-74 chr5 62477701 62478051 + 1 NA intron (NM_016338, intron 9 of 29) intron (NM_016338, intron 9 of 29) 58992 NM_001134779 51194 Hs.482269 NM_016338 ENSG00000086200 IPO11 RanBP11 importin 11 protein-coding 158.25-54 chr2 102615628 102615885 + 1 NA Intergenic Intergenic -3797 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 276.5-5 chr13 20645801 20646139 + 1 NA intron (NR_148462, intron 22 of 28) intron (NR_148462, intron 22 of 28) -57373 NM_138284 53342 Hs.655142 NM_138284 ENSG00000172458 IL17D IL-17D interleukin 17D protein-coding 277.5-5 chr11 79803332 79803750 + 1 NA Intergenic Intergenic -362511 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 188.5-31 chr21 31680384 31680579 + 1 NA intron (NM_020706, intron 19 of 19) intron (NM_020706, intron 19 of 19) 20859 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 150.5-9 chr1 108960877 108961032 + 1 NA intron (NM_015127, intron 1 of 11) FLAM_C|SINE|Alu 2545 NM_015127 23155 Hs.658489 NM_015127 ENSG00000121940 CLCC1 MCLC chloride channel CLIC like 1 protein-coding 260.5-20 chr9 29076259 29076918 + 1 NA intron (NM_001354574, intron 1 of 5) (AT)n|Simple_repeat|Simple_repeat 135711 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 169.5-66 chr4 58579119 58579377 + 1 NA Intergenic MER2|DNA|TcMar-Tigger -42920 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 248.5-3 chr11 94846403 94846893 + 1 NA intron (NM_130847, intron 6 of 12) intron (NM_130847, intron 6 of 12) 78292 NM_001301007 154810 Hs.503594 NM_130847 ENSG00000166025 AMOTL1 JEAP angiomotin like 1 protein-coding 195.25-62 chr8 130871872 130872303 + 1 NA intron (NM_001115, intron 8 of 17) intron (NM_001115, intron 8 of 17) 168822 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 324.75-6 chr3 115030752 115031210 + 1 NA intron (NM_015642, intron 1 of 9) intron (NM_015642, intron 1 of 9) 40433 NM_001164343 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 180.5-12 chr12 20017602 20017976 + 1 NA intron (NR_040098, intron 1 of 2) intron (NR_040098, intron 1 of 2) 3104 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 176.5-53 chr3 105950513 105950802 + 1 NA Intergenic L1MCa|LINE|L1 -81256 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 209.5-29 chr2 57671361 57671858 + 1 NA Intergenic L1M5|LINE|L1 -236042 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 260.25-7 chr14 71415182 71415572 + 1 NA intron (NM_001354286, intron 3 of 24) intron (NM_001354286, intron 3 of 24) 17040 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 268.5-22 chr5 102332082 102332493 + 1 NA Intergenic L1MEd|LINE|L1 -36003 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 223.75-16 chr20 36916794 36917187 + 1 NA exon (NM_001363733, exon 8 of 16) exon (NM_001363733, exon 8 of 16) 34718 NM_001363733 25939 Hs.580681 NM_015474 ENSG00000101347 SAMHD1 CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 protein-coding 210.5-22 chr2 178126553 178126815 + 1 NA intron (NM_001365579, intron 9 of 9) intron (NM_001365579, intron 9 of 9) 14247 NM_152945 129831 Hs.377257 NM_152945 ENSG00000155636 RBM45 DRB1|RB-1 RNA binding motif protein 45 protein-coding 192.25-24 chr16 9873340 9873801 + 1 NA intron (NM_001134408, intron 4 of 13) (CAA)n|Simple_repeat|Simple_repeat 308497 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 248.75-5 chr12 17566665 17567164 + 1 NA Intergenic L1M4|LINE|L1 22164 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 219.25-29 chr21 18263010 18263292 + 1 NA intron (NM_001204174, intron 5 of 5) MIR|SINE|MIR 17276 NM_001204174 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 299.25-11 chr5 25287102 25287551 + 1 NA intron (NR_136209, intron 1 of 3) intron (NR_136209, intron 1 of 3) 96373 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 222.5-54 chr8 117336689 117337100 + 1 NA Intergenic Intergenic -183819 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 199.25-30 chr18 65615652 65615924 + 1 NA Intergenic L1MCa|LINE|L1 -134464 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 168.75-23 chr14 86319721 86319919 + 1 NA Intergenic Intergenic 385142 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 190.25-23 chr20 15704247 15704536 + 1 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 218923 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 209.75-46 chrX 43252954 43253196 + 1 NA Intergenic Intergenic 76081 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 462.25-2 chr5 45811063 45811669 + 1 NA Intergenic L1MC1|LINE|L1 -114986 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 216.5-42 chr8 80339675 80340080 + 1 NA Intergenic LTR16A2|LTR|ERVL 98488 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 206.25-14 chr14 59036869 59037125 + 1 NA Intergenic Intergenic -151670 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 227.75-4 chr10 79382376 79382650 + 1 NA 3' UTR (NM_153367, exon 4 of 4) 3' UTR (NM_153367, exon 4 of 4) 35044 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 235.5-42 chrX 46085219 46085630 + 1 NA Intergenic L1MD2|LINE|L1 -233934 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 164.75-18 chr11 90665499 90665787 + 1 NA intron (NR_104190, intron 3 of 6) L1PA8A|LINE|L1 -109786 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 251.5-23 chr5 87869073 87869486 + 1 NA Intergenic Intergenic 207237 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 194.25-55 chrX 70821716 70822009 + 1 NA intron (NM_001003811, intron 9 of 30) L1MA9|LINE|L1 24433 NR_145758 109617015 NR_145758 ENSG00000280704 SNORD3E - small nucleolar RNA, C/D box 3E snoRNA 345.5-5 chr3 106181607 106182006 + 1 NA Intergenic Intergenic -312405 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 211.25-46 chr8 132917386 132917780 + 1 NA intron (NM_003235, intron 20 of 47) L2c|LINE|L2 50625 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 369.75 chr10 105958855 105959524 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -138856 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 195.5-61 chr6 118701662 118702016 + 1 NA intron (NM_001178035, intron 1 of 13) MLT1L|LTR|ERVL-MaLR 8236 NM_001178035 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 196.25-16 chr14 55263371 55263646 + 1 NA Intergenic Intergenic -7913 NM_017943 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 211.75-30 chr5 38016587 38016887 + 1 NA Intergenic L2b|LINE|L2 -8960 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 286.75-15 chr8 32676794 32677179 + 1 NA intron (NM_001322205, intron 1 of 8) intron (NM_001322205, intron 1 of 8) 29897 NM_001322206 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 289.25-12 chr3 194909130 194909579 + 1 NA Intergenic Intergenic -140645 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 309.25-4 chr2 35022171 35022618 + 1 NA Intergenic L1M4|LINE|L1 344837 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 163.5-55 chr2 41981627 41981842 + 1 NA Intergenic Arthur1|DNA|hAT-Tip100 -27928 NR_161189 400950 Hs.738713 NM_001242815 ENSG00000205086 C2orf91 - chromosome 2 open reading frame 91 ncRNA 150.75-14 chr11 48318155 48318418 + 1 NA Intergenic L1ME3B|LINE|L1 -6634 NM_001004702 256144 Hs.553656 NM_001004702 ENSG00000176547 OR4C3 OR11-98 olfactory receptor family 4 subfamily C member 3 protein-coding 214.25-28 chr5 159653482 159653922 + 1 NA Intergenic Intergenic -187426 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 155.75-55 chr2 77783284 77783516 + 1 NA intron (NR_110288, intron 3 of 3) AluJb|SINE|Alu -132534 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 156.75-88 chr6 166826610 166826903 + 1 NA intron (NM_001318936, intron 2 of 22) L4_A_Mam|LINE|RTE-X 35769 NM_001006932 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 247.75 chr1 112084238 112084747 + 1 NA Intergenic Intergenic 93956 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 388.25 chr1 114437740 114438215 + 1 NA intron (NM_015906, intron 4 of 19) FLAM_A|SINE|Alu 73226 NM_033020 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 306.25-3 chr10 5114449 5114887 + 1 NA Intergenic Tigger3d|DNA|TcMar-Tigger 20254 NM_001253909 8644 Hs.78183 NM_003739 ENSG00000196139 AKR1C3 DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS aldo-keto reductase family 1 member C3 protein-coding 203.5-23 chr18 75733466 75733745 + 1 NA Intergenic L1MCb|LINE|L1 -21202 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 162.25-8 chr10 83813097 83813437 + 1 NA Intergenic MER8|DNA|TcMar-Tigger -136178 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 163.5-17 chr10 118526978 118527209 + 1 NA Intergenic LTR103b_Mam|LTR|ERV1? 68555 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 251.75-16 chr3 62412808 62413276 + 1 NA intron (NM_003716, intron 28 of 29) intron (NM_003716, intron 28 of 29) -39492 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 218.75-26 chr8 113137613 113138064 + 1 NA intron (NM_001363185, intron 4 of 66) intron (NM_001363185, intron 4 of 66) 239314 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 302.25-3 chr11 80748362 80748844 + 1 NA Intergenic MIRc|SINE|MIR 14200 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 216.5-22 chr2 232140975 232141297 + 1 NA intron (NR_046476, intron 8 of 20) L3|LINE|CR1 -31517 NR_030288 693147 NR_030288 ENSG00000207626 MIR562 MIRN562|hsa-mir-562 microRNA 562 ncRNA 335.25-5 chr8 89770288 89770971 + 1 NA intron (NM_003821, intron 4 of 10) intron (NM_003821, intron 4 of 10) 12813 NM_003821 8767 Hs.103755 NM_003821 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor interacting serine/threonine kinase 2 protein-coding 312.25 chr11 4981242 4981669 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -6736 NM_021801 56547 Hs.204732 NM_021801 ENSG00000167346 MMP26 - matrix metallopeptidase 26 protein-coding 169.25-62 chr9 30023790 30024085 + 1 NA Intergenic Intergenic 384517 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 183.75-9 chr1 222159620 222159913 + 1 NA Intergenic Intergenic -181246 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 263.25-15 chr4 31799332 31799843 + 1 NA Intergenic L1MA3|LINE|L1 -197792 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 185.5-38 chr2 124481470 124481754 + 1 NA intron (NM_001367498, intron 7 of 23) intron (NM_001367498, intron 7 of 23) 456325 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 272.25-10 chr3 157130165 157130805 + 1 NA Intergenic Intergenic -7483 NR_034007 339894 Hs.478050 NR_034007 ENSG00000243629 LINC00880 - long intergenic non-protein coding RNA 880 ncRNA 237.5-14 chr2 55939610 55939980 + 1 NA Intergenic MIR|SINE|MIR -16013 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 234.75-10 chr14 37886623 37887053 + 1 NA Intergenic L1MC1|LINE|L1 15286 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 245.25-23 chr7 109988598 109989105 + 1 NA Intergenic L1MEi|LINE|L1 -28638 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 250.5-28 chr8 108430096 108430463 + 1 NA Intergenic Intergenic -13304 NM_001329494 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 198.75-51 chr8 133330585 133330980 + 1 NA Intergenic AluSx1|SINE|Alu -33478 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 219.5-25 chr6 98312415 98312706 + 1 NA Intergenic Intergenic 288029 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 270.5-13 chr22 28145503 28145897 + 1 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -225088 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 248.75-20 chr8 137014006 137014345 + 1 NA Intergenic L1MEc|LINE|L1 399413 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 293.75-10 chr5 10671027 10671527 + 1 NA Intergenic Intergenic 89957 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 156.5-109 chr8 82321735 82321976 + 1 NA Intergenic MLT2C1|LTR|ERVL -479569 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 184.25-38 chr20 46075592 46076086 + 1 NA intron (NM_001348148, intron 1 of 6) intron (NM_001348148, intron 1 of 6) 14123 NM_020967 57727 Hs.654991 NM_020967 ENSG00000124160 NCOA5 CIA|bA465L10.6 nuclear receptor coactivator 5 protein-coding 303.5-8 chr18 64977100 64977663 + 1 NA Intergenic Intergenic -717326 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 284.75-19 chr9 29841972 29842577 + 1 NA Intergenic L1MA9|LINE|L1 566180 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 171.5-74 chr4 127085432 127085638 + 1 NA Intergenic THE1C|LTR|ERVL-MaLR -547422 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 215.5-44 chr6 92699485 92699791 + 1 NA Intergenic Intergenic 719921 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 158.5-97 chr8 81018037 81018311 + 1 NA intron (NM_018440, intron 3 of 8) intron (NM_018440, intron 3 of 8) 93894 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 245.5-28 chr5 73732802 73733182 + 1 NA intron (NM_001177693, intron 2 of 35) intron (NM_001177693, intron 2 of 35) -80554 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 147.5-61 chr3 103626353 103626502 + 1 NA Intergenic L1MA4|LINE|L1 -102311 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 242.5-19 chr20 22786952 22787420 + 1 NA Intergenic Zaphod|DNA|hAT-Tip100 -101842 NR_146528 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 184.5-70 chr8 118059882 118060194 + 1 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 51781 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 247.75-16 chr2 188416782 188417138 + 1 NA intron (NM_016315, intron 2 of 11) intron (NM_016315, intron 2 of 11) 119468 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 252.5-7 chr15 97429645 97430111 + 1 NA intron (NR_120324, intron 2 of 4) MSTA|LTR|ERVL-MaLR 91933 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 153.25-30 chr12 17191804 17192089 + 1 NA Intergenic Intergenic 203199 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 270.5-7 chr17 6278363 6278741 + 1 NA Intergenic L1ME3Cz|LINE|L1 156569 NM_014336 23746 Hs.279887 NM_014336 ENSG00000129221 AIPL1 AIPL2|LCA4 aryl hydrocarbon receptor interacting protein like 1 protein-coding 341.5-4 chr6 55327265 55327940 + 1 NA intron (NM_207410, intron 1 of 8) intron (NM_207410, intron 1 of 8) 133 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 237.5-3 chr11 41745956 41746251 + 1 NA intron (NR_120584, intron 2 of 5) L1MB2|LINE|L1 31535 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 174.5-64 chr5 85115045 85115330 + 1 NA Intergenic Intergenic -730307 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 199.5-3 chr10 63547281 63547829 + 1 NA intron (NM_001001330, intron 1 of 7) intron (NM_001001330, intron 1 of 7) -25665 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 231.5-8 chr17 57618951 57619546 + 1 NA intron (NM_001322250, intron 9 of 13) intron (NM_001322250, intron 9 of 13) -10836 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 258.25-21 chr7 17243515 17243907 + 1 NA Intergenic L1ME3G|LINE|L1 -54941 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 206.75-36 chr4 65190415 65190769 + 1 NA Intergenic A-rich|Low_complexity|Low_complexity -186092 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 234.5-18 chr3 49628311 49628626 + 1 NA intron (NM_003458, intron 2 of 11) intron (NM_003458, intron 2 of 11) -45883 NM_001640 327 Hs.517969 NM_001640 ENSG00000164062 APEH AARE|ACPH|APH|D3F15S2|D3S48E|DNF15S2|OPH acylaminoacyl-peptide hydrolase protein-coding 296.75-2 chr17 30856484 30857187 + 1 NA intron (NM_024857, intron 7 of 22) intron (NM_024857, intron 7 of 22) 24869 NM_024857 79915 Hs.528902 NM_024857 ENSG00000176208 ATAD5 C17orf41|ELG1|FRAG1 ATPase family AAA domain containing 5 protein-coding 243.5-16 chr2 236152720 236153251 + 1 NA Intergenic L1ME3F|LINE|L1 15401 NM_001301687 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 289.25-14 chr6 138902760 138903192 + 1 NA 3' UTR (NM_001195037, exon 21 of 21) 3' UTR (NM_001195037, exon 21 of 21) 85285 NM_031922 85021 Hs.334603 NM_031922 ENSG00000135597 REPS1 NBIA7|RALBP1 RALBP1 associated Eps domain containing 1 protein-coding 223.25-38 chr8 128494998 128495271 + 1 NA intron (NR_121672, intron 2 of 7) L2a|LINE|L2 69545 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 222.5-5 chr1 235292662 235293049 + 1 NA intron (NR_135074, intron 2 of 24) intron (NR_135074, intron 2 of 24) 34632 NM_001206794 51742 Hs.575782 NM_016374 ENSG00000054267 ARID4B BCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180 AT-rich interaction domain 4B protein-coding 179.25-5 chr1 89186622 89186899 + 1 NA intron (NM_052941, intron 9 of 10) intron (NM_052941, intron 9 of 10) -10757 NM_207398 388646 Hs.591450 NM_207398 ENSG00000213512 GBP7 GBP4L guanylate binding protein 7 protein-coding 204.5-23 chr3 60009527 60009777 + 1 NA intron (NM_001320901, intron 5 of 6) L1MB7|LINE|L1 71257 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 263.25-9 chr16 53571667 53572014 + 1 NA Intergenic L1MEb|LINE|L1 -68536 NM_001308325 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 271.5-8 chr17 62769984 62770305 + 1 NA intron (NM_001288780, intron 4 of 10) L1PA16|LINE|L1 36496 NM_001100875 162333 Hs.665663 NM_152598 ENSG00000173838 MARCH10 MARCH-X|RNF190 membrane associated ring-CH-type finger 10 protein-coding 583.5 chr5 29896601 29897694 + 1 NA Intergenic AluSq|SINE|Alu 16587 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 269.5-17 chr6 44437328 44437743 + 1 NA intron (NM_001253, intron 14 of 15) intron (NM_001253, intron 14 of 15) 1894 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 230.75-31 chr4 178593033 178593406 + 1 NA Intergenic L1M5|LINE|L1 -685283 NR_108093 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 191.25-16 chr11 75493988 75494311 + 1 NA intron (NM_030792, intron 1 of 16) Zaphod|DNA|hAT-Tip100 31424 NM_001351168 81544 Hs.503297 NM_030792 ENSG00000158555 GDPD5 GDE2|PP1665 glycerophosphodiester phosphodiesterase domain containing 5 protein-coding 239.5-15 chr15 70113538 70114026 + 1 NA Intergenic L2a|LINE|L2 -15865 NM_020908 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 241.25-13 chr2 55537399 55537994 + 1 NA intron (NM_001282761, intron 8 of 10) intron (NM_001282761, intron 8 of 10) 18101 NM_080667 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 241.75-12 chr2 164564499 164564760 + 1 NA intron (NM_004490, intron 2 of 13) Tigger14a|DNA|TcMar-Tigger 3866 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 235.5-39 chr8 102873807 102874235 + 1 NA intron (NR_126338, intron 1 of 3) intron (NR_126338, intron 1 of 3) 9750 NR_126338 100506753 Hs.602901 NR_126338 AZIN1-AS1 - AZIN1 antisense RNA 1 ncRNA 218.5-8 chr12 49627017 49627393 + 1 NA intron (NM_012272, intron 1 of 24) MER104|DNA|TcMar-Tc2 -3339 NM_001363607 25766 Hs.706827 NM_012272 ENSG00000110844 PRPF40B HYPC pre-mRNA processing factor 40 homolog B protein-coding 236.5-23 chr4 81087871 81088237 + 1 NA 3' UTR (NM_001282483, exon 14 of 14) 3' UTR (NM_001282483, exon 14 of 14) 57346 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 173.25-29 chr17 71483791 71484161 + 1 NA Intergenic L2a|LINE|L2 -281797 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 151.25-17 chr12 49010447 49010733 + 1 NA intron (NR_147178, intron 2 of 2) HAL1|LINE|L1 8186 NM_001206710 5571 Hs.530862 NM_002733 ENSG00000181929 PRKAG1 AMPKG protein kinase AMP-activated non-catalytic subunit gamma 1 protein-coding 184.25-22 chr15 86510767 86511062 + 1 NA intron (NM_152336, intron 18 of 24) intron (NM_152336, intron 18 of 24) -193946 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 217.25-43 chr8 58504259 58504665 + 1 NA Intergenic Intergenic -4299 NM_000780 1581 Hs.1644 NM_000780 ENSG00000167910 CYP7A1 CP7A|CYP7|CYPVII cytochrome P450 family 7 subfamily A member 1 protein-coding 210.25-32 chr5 23701964 23702357 + 1 NA Intergenic Intergenic 194505 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 244.25-17 chr3 132482985 132483487 + 1 NA intron (NM_001329126, intron 28 of 56) intron (NM_001329126, intron 28 of 56) 65734 NM_001329126 23317 Hs.12707 NM_015268 ENSG00000138246 DNAJC13 PARK21|RME8 DnaJ heat shock protein family (Hsp40) member C13 protein-coding 227.5-23 chr5 21175879 21176291 + 1 NA Intergenic L1MEb|LINE|L1 -283395 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 146.25-5 chr1 195437236 195437527 + 1 NA Intergenic Intergenic 651334 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 263.5-28 chr9 128892449 128892909 + 1 NA intron (NM_001127244, intron 2 of 3) intron (NM_001127244, intron 2 of 3) -10156 NM_001352988 883 Hs.495250 NM_004059 ENSG00000171097 KYAT1 CCBL1|GTK|KAT1|KATI kynurenine aminotransferase 1 protein-coding 185.25-48 chr2 169541089 169541442 + 1 NA intron (NM_024622, intron 9 of 14) intron (NM_024622, intron 9 of 14) 31563 NM_006063 10324 Hs.50550 NM_006063 ENSG00000239474 KLHL41 KBTBD10|Krp1|SARCOSIN kelch like family member 41 protein-coding 179.5-40 chr2 113128866 113129069 + 1 NA intron (NM_001318914, intron 4 of 6) MamRTE1|LINE|RTE-BovB 1369 NM_173842 3557 Hs.81134 NM_000577 ENSG00000136689 IL1RN DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4 interleukin 1 receptor antagonist protein-coding 188.5-17 chr13 55266586 55266801 + 1 NA Intergenic Intergenic 92239 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 213.75-36 chr7 21809884 21810195 + 1 NA intron (NM_001277115, intron 63 of 81) intron (NM_001277115, intron 63 of 81) 135860 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 316.75-4 chr12 85567967 85568393 + 1 NA Intergenic Intergenic 268229 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 234.5-15 chr2 96098939 96099441 + 1 NA Intergenic Intergenic 17381 NM_000682 151 Hs.247686 NM_000682 ENSG00000274286 ADRA2B ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR adrenoceptor alpha 2B protein-coding 206.75-46 chr5 116013256 116013623 + 1 NA intron (NM_173800, intron 15 of 19) intron (NM_173800, intron 15 of 19) -38027 NM_001195581 644100 Hs.98288 NM_001195581 ENSG00000268223 ARL14EPL - ADP ribosylation factor like GTPase 14 effector protein like protein-coding 171.5-16 chr10 92617966 92618323 + 1 NA intron (NM_004523, intron 9 of 21) L1MB8|LINE|L1 25014 NM_004523 3832 Hs.8878 NM_004523 ENSG00000138160 KIF11 EG5|HKSP|KNSL1|MCLMR|TRIP5 kinesin family member 11 protein-coding 241.75 chr1 50900205 50900592 + 1 NA intron (NM_007051, intron 1 of 18) intron (NM_007051, intron 1 of 18) 59869 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 157.5-6 chr10 60569059 60569330 + 1 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 3762 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 199.75-17 chr14 25009674 25009961 + 1 NA intron (NM_001351940, intron 1 of 6) intron (NM_001351940, intron 1 of 6) 39183 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 190.5-6 chr10 13159323 13159555 + 1 NA Intergenic Intergenic -2119 NM_018518 55388 Hs.198363 NM_018518 ENSG00000065328 MCM10 CNA43|DNA43|PRO2249 minichromosome maintenance 10 replication initiation factor protein-coding 347.75-5 chr14 67160060 67160702 + 1 NA intron (NM_001024218, intron 18 of 21) intron (NM_001024218, intron 18 of 21) -29059 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 158.5-34 chr17 76236606 76236893 + 1 NA intron (NM_052916, intron 1 of 18) L1ME4b|LINE|L1 3744 NM_052916 114804 Hs.500643 NM_052916 ENSG00000141576 RNF157 - ring finger protein 157 protein-coding 268.25-7 chr14 70315745 70316330 + 1 NA Intergenic Intergenic 43646 NM_016468 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 170.75-66 chr7 83565716 83565899 + 1 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 75624 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 172.5-14 chr11 111975504 111975892 + 1 NA 3' UTR (NM_001278542, exon 6 of 6) 3' UTR (NM_001278542, exon 6 of 6) -1611 NM_033425 85458 Hs.655626 NM_033425 ENSG00000150764 DIXDC1 CCD1 DIX domain containing 1 protein-coding 185.75-79 chr7 119574593 119575218 + 1 NA Intergenic L1PA15|LINE|L1 332470 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 258.25 chr1 32371856 32372318 + 1 NA intron (NR_125352, intron 9 of 11) intron (NR_125352, intron 9 of 11) 9548 NM_052841 81629 Hs.512763 NM_052841 ENSG00000162526 TSSK3 SPOGA3|STK22C|STK22D|TSK3 testis specific serine kinase 3 protein-coding 181.5-65 chr7 8826403 8826749 + 1 NA Intergenic L1ME3A|LINE|L1 392967 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 206.75-22 chr2 50656552 50657032 + 1 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) 39470 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 201.5-50 chr5 30978590 30978825 + 1 NA Intergenic Intergenic -214979 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 285.25-3 chr4 89279071 89279507 + 1 NA intron (NM_198281, intron 1 of 1) intron (NM_198281, intron 1 of 1) 28511 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 162.25-91 chr8 14929889 14930089 + 1 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) -76479 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 150.75-62 chr4 38831578 38831793 + 1 NA intron (NM_006068, intron 1 of 1) L1MC2|LINE|L1 25132 NM_006068 10333 Hs.575090 NM_006068 ENSG00000174130 TLR6 CD286 toll like receptor 6 protein-coding 175.25-19 chr13 68798982 68799323 + 1 NA Intergenic L1MEf|LINE|L1 86173 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 279.75-2 chr1 152702746 152703147 + 1 NA Intergenic L1MD|LINE|L1 4601 NM_178428 353139 Hs.334054 NM_178428 ENSG00000187173 LCE2A LEP9 late cornified envelope 2A protein-coding 199.25-15 chr14 64461267 64461490 + 1 NA intron (NM_001304508, intron 2 of 2) MIR|SINE|MIR -4121 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 226.5-26 chr8 55131884 55132308 + 1 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 30068 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 291.25-8 chr6 23262065 23262488 + 1 NA Intergenic Intergenic -544352 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 248.5-8 chr2 23304307 23304761 + 1 NA Intergenic Intergenic -80645 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 163.5-89 chr5 53713316 53713717 + 1 NA Intergenic Intergenic 106166 NR_147167 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 217.5-34 chr7 87846298 87846675 + 1 NA intron (NM_018843, intron 8 of 11) intron (NM_018843, intron 8 of 11) 29874 NM_018843 55972 Hs.208414 NM_018843 ENSG00000075303 SLC25A40 MCFP solute carrier family 25 member 40 protein-coding 241.5-4 chr10 124675950 124676455 + 1 NA intron (NM_014661, intron 4 of 4) intron (NM_014661, intron 4 of 4) -27826 NR_120631 101927944 Hs.437448 NR_120630 FAM53B-AS1 - FAM53B antisense RNA 1 ncRNA 306.5-5 chr4 73228061 73228436 + 1 NA intron (NM_032217, intron 1 of 33) intron (NM_032217, intron 1 of 33) -5191 NM_001286771 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 196.5-19 chr16 71377282 71377596 + 1 NA intron (NM_001740, intron 3 of 10) intron (NM_001740, intron 3 of 10) 18716 NR_027910 794 Hs.106857 NM_001740 ENSG00000172137 CALB2 CAB29|CAL2|CR calbindin 2 protein-coding 274.5-13 chr5 88629302 88629879 + 1 NA intron (NR_152235, intron 2 of 3) intron (NR_152235, intron 2 of 3) 37349 NR_030741 407047 NR_030741 ENSG00000284447 MIR9-2 MIRN9-2|hsa-mir-9-2|miRNA9-2|mir-9-2 microRNA 9-2 ncRNA 325.75-3 chr2 35294596 35295239 + 1 NA Intergenic Intergenic -176488 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 178.5-35 chr19 43319160 43319410 + 1 NA Intergenic MER41C|LTR|ERV1 -29771 NR_026881 23574 Hs.721578 NR_026881 PRG1 - p53-responsive gene 1 ncRNA 189.5-4 chr1 223798195 223798480 + 1 NA exon (NM_001031685, exon 12 of 18) exon (NM_001031685, exon 12 of 18) 47610 NM_001031685 7159 Hs.523968 NM_005426 ENSG00000143514 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 234.5-2 chr12 108086532 108086998 + 1 NA Intergenic L1ME4a|LINE|L1 -42523 NM_014653 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 265.75-14 chr5 60344782 60345228 + 1 NA intron (NM_001364599, intron 1 of 16) L1ME4a|LINE|L1 27658 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 198.25-21 chr2 77255556 77255785 + 1 NA intron (NR_146416, intron 1 of 1) L1MD2|LINE|L1 266706 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 249.75-13 chr4 30526428 30527096 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR -193607 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 224.25-2 chr10 20829481 20829910 + 1 NA intron (NM_006393, intron 16 of 27) intron (NM_006393, intron 16 of 27) 67907 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 234.75-7 chr10 114475042 114475371 + 1 NA intron (NM_001352440, intron 8 of 20) L2b|LINE|L2 51707 NM_001322898 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 257.5-13 chr2 181783652 181784134 + 1 NA Intergenic L2|LINE|L2 -103228 NM_002500 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 287.25-13 chr6 40965978 40966429 + 1 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 57077 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 191.25-30 chr16 59111642 59111995 + 1 NA Intergenic Intergenic -377502 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 359.75-2 chr4 45919851 45920310 + 1 NA Intergenic Intergenic 203974 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 292.75-5 chr20 4453781 4454365 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -204786 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 236.75-2 chr1 79811386 79811757 + 1 NA Intergenic Intergenic -724184 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 148.25-3 chr1 152083045 152083348 + 1 NA TTS (NM_001008536) TTS (NM_001008536) -2272 NM_001310142 100131107 NM_001310142 LOC100131107 - putative UPF0607 protein ENSP00000383783 protein-coding 149.25-44 chr2 20978348 20978613 + 1 NA Intergenic Intergenic 65593 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 226.5-12 chr17 28910804 28911055 + 1 NA intron (NM_001033561, intron 10 of 14) intron (NM_001033561, intron 10 of 14) -7850 NM_144683 147015 Hs.631760 NM_144683 ENSG00000167536 DHRS13 SDR7C5 dehydrogenase/reductase 13 protein-coding 170.5-80 chr8 127272065 127272324 + 1 NA intron (NR_117099, intron 1 of 3) intron (NR_117099, intron 1 of 3) 27557 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 271.25-3 chr10 119614452 119614782 + 1 NA Intergenic L2b|LINE|L2 -17588 NM_001323967 7073 Hs.501203 NM_003252 ENSG00000151923 TIAL1 TCBP|TIAR TIA1 cytotoxic granule associated RNA binding protein like 1 protein-coding 289.75-18 chr8 89419557 89420208 + 1 NA Intergenic Intergenic 337829 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 224.5-35 chr8 57804584 57804955 + 1 NA Intergenic Intergenic 58620 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 187.75-74 chr8 136685428 136685675 + 1 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 154753 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 277.5-14 chr3 132573439 132573829 + 1 NA intron (NR_132427, intron 15 of 17) intron (NR_132427, intron 15 of 17) -23636 NM_016557 51554 Hs.310512 NM_016557 ENSG00000129048 ACKR4 CC-CKR-11|CCBP2|CCR-11|CCR10|CCR11|CCRL1|CCX CKR|CCX-CKR|CKR-11|PPR1|VSHK1 atypical chemokine receptor 4 protein-coding 190.25-51 chr7 49824572 49824785 + 1 NA intron (NR_136188, intron 2 of 3) L1ME1|LINE|L1 49345 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 262.5-12 chr20 14904807 14905180 + 1 NA TTS (NR_072988) TTS (NR_072988) 24525 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 178.5-2 chr1 107549831 107550085 + 1 NA Intergenic L2a|LINE|L2 138541 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 224.25-7 chr12 54537154 54537514 + 1 NA intron (NM_001184976, intron 29 of 30) MIR3|SINE|MIR -12059 NM_001288768 5153 Hs.530871 NM_000924 ENSG00000123360 PDE1B HEL-S-79p|PDE1B1|PDES1B phosphodiesterase 1B protein-coding 346.5-6 chr6 66176211 66176600 + 1 NA Intergenic L1MCb|LINE|L1 388526 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 303.25-5 chr18 72890383 72890932 + 1 NA Intergenic Intergenic 21617 NR_134647 100505797 Hs.145111 NR_134647 ENSG00000263958 LOC100505797 - myosin heavy chain IB-like ncRNA 241.5-10 chr2 7481372 7481878 + 1 NA Intergenic L1M2|LINE|L1 60364 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 197.5-38 chr21 18954066 18954269 + 1 NA Intergenic Intergenic -194355 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 248.75-13 chr4 170963640 170964063 + 1 NA Intergenic Intergenic -76751 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 228.5-22 chr17 61025806 61026321 + 1 NA intron (NM_001320470, intron 16 of 25) intron (NM_001320470, intron 16 of 25) 341641 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 268.25-16 chr3 1847737 1848342 + 1 NA Intergenic MIRb|SINE|MIR -250764 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 268.25-5 chr14 41054115 41054422 + 1 NA intron (NR_109758, intron 3 of 3) L1ME2|LINE|L1 99557 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 288.5-14 chr4 75559215 75559743 + 1 NA intron (NM_001206981, intron 2 of 2) MIR|SINE|MIR 3413 NR_046430 152816 Hs.24510 NM_178497 ENSG00000174792 ODAPH AI2A4|C4orf26 odontogenesis associated phosphoprotein protein-coding 287.5-6 chr12 7586395 7587000 + 1 NA Intergenic L1P4a|LINE|L1 79211 NM_001644 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 368.75-2 chr2 134644399 134645260 + 1 NA intron (NM_030923, intron 2 of 7) L1ME1|LINE|L1 74171 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 221.5-33 chr22 23254230 23254651 + 1 NA intron (NM_004327, intron 2 of 22) MIRb|SINE|MIR -8327 NR_033408 26226 Hs.729589 NR_033408 ENSG00000230701 FBXW4P1 FBW3|FBXW3|SHFM3P1 F-box and WD repeat domain containing 4 pseudogene 1 pseudo 325.75-7 chr7 40077640 40078175 + 1 NA intron (NM_003718, intron 9 of 13) intron (NM_003718, intron 9 of 13) 56715 NM_138701 136647 Hs.654989 NM_138701 ENSG00000168303 MPLKIP ABHS|C7orf11|ORF20|TTD4 M-phase specific PLK1 interacting protein protein-coding 186.75-24 chr13 60338893 60339222 + 1 NA Intergenic Intergenic -57400 NM_001146071 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 312.5-8 chr7 80719366 80720106 + 1 NA Intergenic Intergenic 73083 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 177.75-71 chr8 58104355 58104656 + 1 NA intron (NM_147189, intron 4 of 4) intron (NM_147189, intron 4 of 4) 109982 NM_147189 90362 Hs.154652 NM_147189 ENSG00000169122 FAM110B C8orf72 family with sequence similarity 110 member B protein-coding 193.25-59 chr8 79211992 79212327 + 1 NA Intergenic Intergenic -120029 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 258.5-5 chr11 92331762 92332213 + 1 NA intron (NM_001367949, intron 1 of 27) intron (NM_001367949, intron 1 of 27) -20109 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 306.5-10 chr8 49820819 49821199 + 1 NA Intergenic Intergenic -88787 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 219.75-16 chr15 92833149 92833490 + 1 NA Intergenic AluJb|SINE|Alu 37835 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 236.5-2 chr10 81523303 81523862 + 1 NA Intergenic Intergenic -351612 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 224.75-12 chr12 97783265 97783681 + 1 NA Intergenic Intergenic -26956 NR_077240 643711 Hs.585557 NR_077240 ENSG00000257501 LOC643711 - platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene pseudo 273.25 chr1 155474829 155475489 + 1 NA intron (NM_018489, intron 3 of 27) AluSz|SINE|Alu 41979 NR_034180 645682 Hs.632482 NR_034180 ENSG00000237872 POU5F1P4 OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1 POU class 5 homeobox 1 pseudogene 4 pseudo 202.5-2 chr1 67298367 67298769 + 1 NA Intergenic L1ME4b|LINE|L1 -8796 NR_047584 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 155.5-101 chr7 144711842 144712119 + 1 NA intron (NM_001042482, intron 3 of 7) intron (NM_001042482, intron 3 of 7) 26918 NM_001350884 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 179.5-27 chr15 80310256 80310548 + 1 NA intron (NR_033833, intron 1 of 2) Zaphod3|DNA|hAT-Tip100 31403 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 290.25-7 chr13 56406070 56406549 + 1 NA Intergenic L1MA2|LINE|L1 -734609 NM_001130407 729250 Hs.525056 NM_001130407 ENSG00000234278 PRR20E PRR20|PRR20A|PRR20B|PRR20C|PRR20D proline rich 20E protein-coding 264.75-4 chr12 118366704 118367312 + 1 NA intron (NM_001346490, intron 1 of 21) AluSx1|SINE|Alu 5899 NM_001346492 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 290.75-6 chr20 47254071 47254511 + 1 NA intron (NM_001281784, intron 11 of 20) L1ME4b|LINE|L1 -64211 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 342.5 chr10 61149147 61149618 + 1 NA Intergenic MIR|SINE|MIR 133107 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 315.5-7 chr18 27206820 27207226 + 1 NA Intergenic Intergenic -21715 NM_001256316 83539 Hs.44584 NM_031422 ENSG00000154080 CHST9 GALNAC4ST-2|GalNAc4ST2 carbohydrate sulfotransferase 9 protein-coding 225.25-10 chr12 40753767 40754185 + 1 NA intron (NM_001256063, intron 1 of 15) L1ME4a|LINE|L1 61534 NM_001256063 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 202.25-52 chr7 26300393 26300648 + 1 NA intron (NM_001318199, intron 1 of 6) intron (NM_001318199, intron 1 of 6) 7489 NM_001318199 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 372.75-4 chr8 85246906 85247491 + 1 NA intron (NM_198584, intron 1 of 6) intron (NM_198584, intron 1 of 6) 1740 NM_198584 377677 Hs.127189 NM_198584 ENSG00000185015 CA13 CAXIII carbonic anhydrase 13 protein-coding 183.5-4 chr1 169206750 169207025 + 1 NA intron (NR_104229, intron 10 of 12) Charlie4a|DNA|hAT-Charlie 100197 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 304.25-4 chr14 45438294 45438693 + 1 NA Intergenic Intergenic -185291 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 192.5-26 chr2 125060211 125060507 + 1 NA Intergenic Intergenic 1035072 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 284.5-9 chr3 11619245 11619586 + 1 NA intron (NM_014667, intron 2 of 5) intron (NM_014667, intron 2 of 5) -14834 NM_001284391 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 352.5-2 chr4 140685971 140686478 + 1 NA intron (NM_015130, intron 3 of 20) L1MC4|LINE|L1 -43144 NR_077215 644962 Hs.676500 NR_077215 TNRC18P1 - trinucleotide repeat containing 18 pseudogene 1 pseudo 147.5-103 chr8 88363752 88363993 + 1 NA Intergenic Intergenic -36389 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 187.75-78 chr9 103385113 103385375 + 1 NA Intergenic MIR|SINE|MIR -60211 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 188.25-50 chr6 16818489 16818965 + 1 NA Intergenic AluSg|SINE|Alu -57237 NM_000332 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 267.5 chr1 165059390 165059788 + 1 NA Intergenic Intergenic -284948 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 217.75-2 chr1 108171513 108172010 + 1 NA intron (NM_013386, intron 3 of 9).2 MIR|SINE|MIR 21074 NM_213651 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1|SCAMC1 solute carrier family 25 member 24 protein-coding 226.5-21 chr3 192668035 192668501 + 1 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 59273 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 160.5-87 chr5 53584100 53584403 + 1 NA intron (NR_134475, intron 2 of 5) L2c|LINE|L2 23612 NR_134475 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 271.75-4 chr10 77107655 77108192 + 1 NA intron (NM_001271519, intron 9 of 28) intron (NM_001271519, intron 9 of 28) -32908 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 263.5-18 chr5 114217865 114218372 + 1 NA Intergenic L1MC1|LINE|L1 -143952 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 369.25-6 chr9 33370588 33371333 + 1 NA 3' UTR (NM_001318758, exon 24 of 24) 3' UTR (NM_001318758, exon 24 of 24) 31608 NM_001170 364 Hs.455323 NM_001170 ENSG00000165269 AQP7 AQP7L|AQPap|GLYCQTL aquaporin 7 protein-coding 153.5-5 chr1 103293939 103294119 + 1 NA Intergenic Intergenic -185507 NR_134980 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 223.5-15 chr13 28280744 28281283 + 1 NA intron (NM_175854, intron 16 of 18) intron (NM_175854, intron 16 of 18) -141839 NR_029383 100288730 Hs.123191 NR_029383 PAN3-AS1 - PAN3 antisense RNA 1 ncRNA 246.75 chr1 42815351 42815664 + 1 NA intron (NM_199342, intron 2 of 2) L1ME3Cz|LINE|L1 -1615 NM_001017922 114625 Hs.439437 NM_018538 ENSG00000164010 ERMAP BTN5|PRO2801|RD|SC erythroblast membrane associated protein (Scianna blood group) protein-coding 184.5-54 chr3 98146929 98147201 + 1 NA Intergenic Intergenic -2321 NM_001005514 403273 Hs.554714 NM_001005514 ENSG00000236032 OR5H14 - olfactory receptor family 5 subfamily H member 14 protein-coding 273.5-13 chr8 86908931 86909433 + 1 NA intron (NM_173538, intron 3 of 10) intron (NM_173538, intron 3 of 10) 42767 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 185.5-12 chr10 43661890 43662179 + 1 NA intron (NR_038867, intron 1 of 4) L1ME2|LINE|L1 -13153 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 150.5-32 chr12 15282774 15283068 + 1 NA Intergenic L1PA2|LINE|L1 -39587 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 243.25-23 chr4 96289348 96289842 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -21108 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 386.75-6 chr8 110445492 110446117 + 1 NA Intergenic Intergenic -470033 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 202.5-7 chr11 22878057 22878420 + 1 NA Intergenic Intergenic -17764 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 373.75-2 chr3 18091267 18091684 + 1 NA intron (NR_161333, intron 4 of 4) intron (NR_161333, intron 4 of 4) 128923 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 335.5-2 chr2 27517764 27518226 + 1 NA intron (NM_001486, intron 16 of 18) MIRb|SINE|MIR 21156 NM_001486 2646 Hs.89771 NM_001486 ENSG00000084734 GCKR FGQTL5|GKRP glucokinase regulator protein-coding 185.5-45 chr3 10789492 10789715 + 1 NA Intergenic L1ME3A|LINE|L1 -25394 NR_152730 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 254.5-2 chr1 239453393 239453818 + 1 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 67037 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 235.5-16 chr2 54224804 54225309 + 1 NA intron (NM_138448, intron 3 of 3) intron (NM_138448, intron 3 of 3) 31173 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 205.5-44 chr7 55978943 55979340 + 1 NA intron (NM_001483, intron 3 of 9) intron (NM_001483, intron 3 of 9) 14556 NM_001202469 2631 Hs.591069 NM_001483 ENSG00000146729 NIPSNAP2 GBAS nipsnap homolog 2 protein-coding 208.5-24 chr17 33568470 33568955 + 1 NA intron (NM_001094, intron 1 of 9) L2c|LINE|L2 -34952 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 219.75-31 chr4 39097647 39098007 + 1 NA intron (NM_199039, intron 5 of 9) L1MC4|LINE|L1 35595 NM_199039 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 227.25-23 chr3 56787328 56787771 + 1 NA intron (NM_001128615, intron 4 of 12) MIRb|SINE|MIR -11832 NM_001128616 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 222.5-11 chr11 13951906 13952174 + 1 NA Intergenic L3|LINE|CR1 -10683 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 375.75 chr1 41653832 41654487 + 1 NA intron (NM_001127714, intron 1 of 7) Helitron3Na_Mam|RC|Helitron -169476 NR_126098 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 216.5-18 chr2 50475490 50475796 + 1 NA intron (NM_001330093, intron 15 of 22) intron (NM_001330093, intron 15 of 22) -127887 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 307.5-6 chr4 53709344 53709668 + 1 NA intron (NR_125918, intron 1 of 2) intron (NR_125918, intron 1 of 2) 13605 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 239.5-4 chr11 22160806 22161080 + 1 NA Intergenic Intergenic -32142 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 241.25-11 chr14 88156679 88157082 + 1 NA Intergenic Intergenic 114031 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 211.5-34 chr3 35047111 35047394 + 1 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 346771 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 194.5-38 chr20 17060042 17060305 + 1 NA Intergenic Intergenic -165934 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 221.75-7 chr11 98135504 98135884 + 1 NA Intergenic L1ME1|LINE|L1 -885255 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 317.5-5 chr4 181220492 181220874 + 1 NA Intergenic Intergenic 44346 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 195.5-3 chr1 224431414 224431731 + 1 NA exon (NM_001115113, exon 3 of 14) exon (NM_001115113, exon 3 of 14) 2727 NM_025160 80232 Hs.497873 NM_025160 ENSG00000162923 WDR26 CDW2|GID7|MIP2|SKDEAS WD repeat domain 26 protein-coding 182.5-20 chr14 79954827 79955039 + 1 NA Intergenic L1PA11|LINE|L1 -256486 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 202.75-24 chr2 42273783 42274120 + 1 NA intron (NM_001145076, intron 5 of 21) intron (NM_001145076, intron 5 of 21) 86087 NR_134948 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 248.25-4 chr14 27106588 27106914 + 1 NA Intergenic Intergenic 198109 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 264.75-3 chr12 16952293 16952720 + 1 NA Intergenic L2b|LINE|L2 -36241 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 296.25 chr1 104395854 104396285 + 1 NA Intergenic Intergenic 323046 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 189.5-54 chr5 94251064 94251368 + 1 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -139517 NM_001163417 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 209.5-25 chr2 37843070 37843503 + 1 NA intron (NR_110012, intron 2 of 3) intron (NR_110012, intron 2 of 3) -13575 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 176.5-27 chr16 56406773 56407031 + 1 NA intron (NM_001144, intron 4 of 13) intron (NM_001144, intron 4 of 13) 18087 NM_001323511 267 Hs.295137 NM_001144 ENSG00000159461 AMFR GP78|RNF45 autocrine motility factor receptor protein-coding 232.5-14 chr14 29107300 29107617 + 1 NA Intergenic Intergenic -321671 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 153.5-83 chr5 58071210 58071406 + 1 NA Intergenic Intergenic 51033 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 180.25-69 chr7 44102694 44102958 + 1 NA Intergenic Intergenic -1519 NM_001129 165 Hs.439463 NM_001129 ENSG00000106624 AEBP1 ACLP AE binding protein 1 protein-coding 152.5-13 chr11 41507511 41507671 + 1 NA Intergenic Intergenic -47939 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 167.25-4 chr1 166208741 166209085 + 1 NA Intergenic L1MB7|LINE|L1 -42158 NM_001320302 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 157.75-101 chr7 7233960 7234163 + 1 NA intron (NM_020156, intron 1 of 3) intron (NM_020156, intron 1 of 3) -21093 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 147.75-24 chr11 66938360 66938661 + 1 NA intron (NM_001040716, intron 3 of 22) intron (NM_001040716, intron 3 of 22) -4004 NR_036121 100423029 NR_036121 ENSG00000266423 MIR3163 - microRNA 3163 ncRNA 303.25-13 chr8 102963897 102964299 + 1 NA intron (NR_126339, intron 2 of 2) intron (NR_126339, intron 2 of 2) -56985 NM_001695 528 Hs.86905 NM_001695 ENSG00000155097 ATP6V1C1 ATP6C|ATP6D|VATC|Vma5 ATPase H+ transporting V1 subunit C1 protein-coding 281.5-9 chr14 36454471 36454897 + 1 NA Intergenic Intergenic 58851 NR_161362 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H|SPH surfactant associated 3 ncRNA 168.5-78 chr4 159137811 159138156 + 1 NA intron (NM_001351724, intron 1 of 30) intron (NM_001351724, intron 1 of 30) -9089 NR_037459 100500881 NR_037459 ENSG00000264105 MIR3688-1 MIR3688|mir-3688-1 microRNA 3688-1 ncRNA 195.5-44 chr3 162838054 162838568 + 1 NA Intergenic Intergenic 464990 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 227.5-21 chr4 132806836 132807327 + 1 NA Intergenic Intergenic 215992 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 180.25-72 chr8 37173036 37173427 + 1 NA Intergenic L1ME4a|LINE|L1 320682 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 266.25-8 chr3 35615119 35615603 + 1 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR -24164 NM_001267616 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 204.5-46 chr8 130544061 130544291 + 1 NA Intergenic L1MC4a|LINE|L1 -100502 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 167.5-7 chr1 101895621 101895852 + 1 NA TTS (NR_033424) TTS (NR_033424) 23724 NR_033424 94236 Hs.606193 NR_033424 DNAJA1P5 HEJ1 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 pseudo 193.5-77 chr8 133935751 133936023 + 1 NA Intergenic L1MC3|LINE|L1 49391 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 157.5-60 chr3 110307309 110307545 + 1 NA Intergenic Intergenic 704599 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 223.25-37 chr8 126290491 126290898 + 1 NA Intergenic L1MD|LINE|L1 -34801 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 284.25-6 chr5 114434118 114434545 + 1 NA intron (NM_170775, intron 1 of 5) L1MC3|LINE|L1 820 NM_170775 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 169.75-59 chr5 32681586 32681924 + 1 NA Intergenic MLT2C1|LTR|ERVL -9117 NM_001364458 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 240.25-8 chr12 41311253 41311800 + 1 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 123206 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 256.25-7 chr11 66212590 66213038 + 1 NA intron (NM_018026, intron 4 of 23) L1MC4|LINE|L1 -44480 NM_001134775 64837 Hs.280792 NM_022822 ENSG00000174996 KLC2 - kinesin light chain 2 protein-coding 155.5-33 chr14 63552977 63553274 + 1 NA Intergenic Intergenic -9730 NM_001354926 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 172.5-48 chr3 103258795 103259075 + 1 NA Intergenic L1ME1|LINE|L1 265181 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 222.5-9 chr10 59886765 59887190 + 1 NA intron (NM_005436, intron 1 of 8) L1ME4b|LINE|L1 19579 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 332.5-3 chr5 15290201 15290832 + 1 NA Intergenic Charlie10|DNA|hAT-Charlie -23956 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 180.5-6 chr10 21137307 21137614 + 1 NA intron (NM_001173484, intron 2 of 6) intron (NM_001173484, intron 2 of 6) -36530 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 146.75-94 chr6 12584738 12584946 + 1 NA intron (NR_149140, intron 1 of 1) intron (NR_149140, intron 1 of 1) 562 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 188.5-28 chr2 167628895 167629183 + 1 NA Intergenic MamRep605|LTR?|LTR? -189633 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 228.5-29 chr2 52865258 52865555 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -162791 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 175.25-17 chr12 118996891 118997192 + 1 NA intron (NM_194286, intron 1 of 12) intron (NM_194286, intron 1 of 12) 15500 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 294.75-10 chr9 106334139 106334629 + 1 NA Intergenic Intergenic -266544 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 215.5-27 chr2 75943389 75943823 + 1 NA Intergenic Intergenic -232691 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 228.75-26 chr8 93560497 93560823 + 1 NA intron (NR_033858, intron 6 of 10) intron (NR_033858, intron 6 of 10) 139773 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 251.5-30 chr7 47237400 47237684 + 1 NA Intergenic L1MEf|LINE|L1 227261 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 209.5-54 chrX 148066470 148066712 + 1 NA Intergenic L1MA4|LINE|L1 85254 NM_152578 158521 Hs.128580 NM_152578 ENSG00000176988 FMR1NB CT37|NY-SAR-35|NYSAR35 FMR1 neighbor protein-coding 395.5-3 chr8 112525808 112526354 + 1 NA intron (NM_001363185, intron 25 of 66) BLACKJACK|DNA|hAT-Blackjack -117412 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 201.5-37 chr3 36849553 36850013 + 1 NA intron (NM_001329998, intron 15 of 23) intron (NM_001329998, intron 15 of 23) -27283 NR_147141 105377031 Hs.333862 NR_147141 ENSG00000279727 LINC02033 - long intergenic non-protein coding RNA 2033 ncRNA 205.5-46 chr8 67746282 67746515 + 1 NA promoter-TSS (NM_020361) promoter-TSS (NM_020361) -38 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 180.5-52 chr4 101836843 101837181 + 1 NA intron (NM_017935, intron 2 of 16) intron (NM_017935, intron 2 of 16) 23170 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 365.5-5 chr7 144161619 144162079 + 1 NA Intergenic THE1D|LTR|ERVL-MaLR -21121 NM_001278507 100142659 Hs.661442 NM_001278507 ENSG00000244693 CTAGE8 CTAGE4 CTAGE family member 8 protein-coding 227.75-19 chr20 17332674 17333043 + 1 NA intron (NM_002594, intron 2 of 11) intron (NM_002594, intron 2 of 11) 105818 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 284.75-14 chr4 160139087 160139519 + 1 NA Intergenic Intergenic -361519 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 197.75-32 chr2 8791467 8791743 + 1 NA intron (NM_001348732, intron 12 of 28) MER104|DNA|TcMar-Tc2 46008 NM_001348743 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS|SINO kinase D interacting substrate 220 protein-coding 274.25-10 chr4 108970913 108971363 + 1 NA intron (NM_001256074, intron 6 of 31) intron (NM_001256074, intron 6 of 31) -208085 NM_001331031 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 246.75-10 chr3 175562997 175563521 + 1 NA intron (NM_207015, intron 9 of 13) intron (NM_207015, intron 9 of 13) 193719 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 171.5-14 chr10 72997189 72997493 + 1 NA Intergenic FLAM_A|SINE|Alu -42535 NM_001318125 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 265.25-4 chr10 54369137 54369670 + 1 NA intron (NM_001354411, intron 4 of 34) intron (NM_001354411, intron 4 of 34) -116827 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 356.5-2 chr14 43529864 43530413 + 1 NA Intergenic Intergenic 977145 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 290.5-7 chr17 61577624 61578199 + 1 NA Intergenic Intergenic 13308 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 183.5-46 chr3 184368866 184369180 + 1 NA TTS (NM_001278699) TTS (NM_001278699) 5662 NM_001278698 5437 Hs.432574 NM_006232 ENSG00000163882 POLR2H RPABC3|RPB17|RPB8 RNA polymerase II subunit H protein-coding 201.75-7 chr10 50222893 50223252 + 1 NA intron (NM_001143974, intron 6 of 18) intron (NM_001143974, intron 6 of 18) 25538 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 305.5-9 chr8 103820193 103820732 + 1 NA intron (NR_145711, intron 1 of 21) intron (NR_145711, intron 1 of 21) 1242 NM_001348509 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 148.75-9 chr10 26360976 26361313 + 1 NA Intergenic Intergenic -77197 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 175.5-48 chr2 123133797 123134082 + 1 NA Intergenic LTR16A2|LTR|ERVL -60458 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 262.25-14 chr6 48027598 48028034 + 1 NA intron (NM_207499, intron 1 of 2) MER31-int|LTR|ERV1 40873 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 248.25-19 chr7 65333621 65334195 + 1 NA Intergenic L1MA3|LINE|L1 -39891 NM_001287532 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 166.5-81 chr7 78853868 78854133 + 1 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -154988 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 150.75-64 chr4 70234508 70234838 + 1 NA intron (NM_152997, intron 4 of 4) intron (NM_152997, intron 4 of 4) -7943 NM_005212 1448 Hs.54415 NM_005212 ENSG00000171209 CSN3 CNS10|CSN10|CSNK|KCA casein kappa protein-coding 241.5-16 chr21 45672619 45673105 + 1 NA intron (NM_001348238, intron 2 of 16) MLT1J2-int|LTR|ERVL-MaLR 3988 NR_145492 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 281.5-19 chr2 52064007 52064453 + 1 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -306418 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 315.75 chr10 76793813 76794179 + 1 NA Intergenic L1M4a1|LINE|L1 -94048 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 274.75-8 chr2 34912768 34913178 + 1 NA Intergenic Intergenic 235416 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 343.25-5 chr6 52993219 52993728 + 1 NA intron (NM_001512, intron 2 of 6) L1MC5a|LINE|L1 1811 NM_001512 2941 Hs.485557 NM_001512 ENSG00000170899 GSTA4 GSTA4-4|GTA4 glutathione S-transferase alpha 4 protein-coding 284.75-2 chr12 12289421 12289784 + 1 NA Intergenic AluSc|SINE|Alu -22558 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 206.5-25 chr3 86375478 86375744 + 1 NA Intergenic Intergenic -106332 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 354.75 chr1 233852351 233852772 + 1 NA Intergenic L2|LINE|L2 -52115 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 235.75-22 chr3 180028756 180029323 + 1 NA intron (NM_016559, intron 1 of 14) L3|LINE|CR1 7898 NM_001349389 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 248.5-19 chr5 27699910 27700219 + 1 NA Intergenic Intergenic 227772 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 247.5-20 chr2 44713903 44714413 + 1 NA intron (NM_024766, intron 6 of 10) L4_A_Mam|LINE|RTE-X 224730 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 173.75-16 chr11 116106934 116107256 + 1 NA Intergenic Intergenic -346895 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 333.5-6 chr5 106555839 106556503 + 1 NA Intergenic MIR|SINE|MIR 454843 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 188.25 chr1 100137413 100137832 + 1 NA intron (NM_019083, intron 3 of 10) LTR40a|LTR|ERVL 4472 NM_019083 54482 Hs.729095 NM_019083 ENSG00000122435 TRMT13 CCDC76 tRNA methyltransferase 13 homolog protein-coding 204.5-11 chr11 68822399 68822665 + 1 NA intron (NM_001031847, intron 1 of 18) AluJo|SINE|Alu 19384 NM_001876 1374 Hs.503043 NM_001876 ENSG00000110090 CPT1A CPT1|CPT1-L|L-CPT1 carnitine palmitoyltransferase 1A protein-coding 257.25-26 chr8 103274378 103274900 + 1 NA intron (NR_148215, intron 2 of 3) L1M4a2|LINE|L1 -23855 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 151.25-10 chr10 98516071 98516405 + 1 NA intron (NM_021828, intron 9 of 11) MIR|SINE|MIR -69275 NM_001322487 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 209.75-31 chr4 78186974 78187280 + 1 NA intron (NM_001166133, intron 2 of 41) intron (NM_001166133, intron 2 of 41) -101858 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 227.75-27 chr6 9428151 9428544 + 1 NA Intergenic Intergenic 776138 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 217.5-28 chr4 45054918 45055263 + 1 NA Intergenic Arthur1|DNA|hAT-Tip100 -328456 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 184.5-56 chr4 18665407 18665757 + 1 NA Intergenic Intergenic -643707 NM_001365659 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 328.5-9 chr8 82867720 82868295 + 1 NA Intergenic Intergenic -44097 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 282.75-15 chr9 9142281 9142824 + 1 NA intron (NM_002839, intron 10 of 45) intron (NM_002839, intron 10 of 45) 284534 NR_121599 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 195.75-66 chr6 124991905 124992333 + 1 NA intron (NR_104440, intron 1 of 6) MER5A1|DNA|hAT-Charlie 8751 NR_104440 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 250.25-10 chr18 70530362 70530714 + 1 NA Intergenic Intergenic 120416 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 211.75-42 chr8 52709763 52710171 + 1 NA intron (NM_001083617, intron 1 of 23) intron (NM_001083617, intron 1 of 23) 4468 NM_014781 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 154.5-87 chr7 26647004 26647237 + 1 NA non-coding (NR_161201, exon 4 of 4) non-coding (NR_161201, exon 4 of 4) 9249 NR_161202 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 179.25-52 chr4 83760271 83760593 + 1 NA Intergenic Intergenic 224324 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 253.5-8 chr19 9486473 9487022 + 1 NA intron (NM_152476, intron 2 of 9) AluSq|SINE|Alu 11869 NM_152476 147741 Hs.631613 NM_152476 ENSG00000198028 ZNF560 - zinc finger protein 560 protein-coding 228.5-7 chr10 34924949 34925253 + 1 NA Intergenic L1M3|LINE|L1 109333 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 220.75-39 chr7 103628058 103628444 + 1 NA intron (NM_005045, intron 20 of 64) intron (NM_005045, intron 20 of 64) -182044 NR_135802 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 204.75-13 chr12 62491544 62492006 + 1 NA intron (NM_001278469, intron 2 of 35) intron (NM_001278469, intron 2 of 35) 24949 NM_015026 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 212.5-48 chr6 165444726 165445024 + 1 NA intron (NM_006661, intron 6 of 22) intron (NM_006661, intron 6 of 22) -135270 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 398.75 chr7 37073775 37074506 + 1 NA intron (NM_001206480, intron 15 of 21) (TA)n|Simple_repeat|Simple_repeat 76344 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 403.5 chr12 97267213 97267884 + 1 NA Intergenic Intergenic -195228 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 159.5-82 chr6 55207958 55208174 + 1 NA intron (NM_001526, intron 2 of 7) intron (NM_001526, intron 2 of 7) 101606 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 203.5-20 chr17 61367601 61367878 + 1 NA promoter-TSS (NR_136397) promoter-TSS (NR_136397) -35 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 237.75-21 chr5 38077399 38077793 + 1 NA intron (NR_147009, intron 2 of 2) L1MEi|LINE|L1 51899 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 241.25-5 chr10 19529647 19530127 + 1 NA intron (NM_001142308, intron 31 of 39) L1MCa|LINE|L1 198663 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 166.75-14 chr11 5107129 5107337 + 1 NA Intergenic Intergenic 25409 NM_001005160 390054 Hs.546593 NM_001005160 ENSG00000171944 OR52A5 OR11-33 olfactory receptor family 52 subfamily A member 5 protein-coding 260.75-18 chr4 31742612 31743114 + 1 NA Intergenic Intergenic 236319 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 188.75-52 chr5 55195248 55195459 + 1 NA Intergenic Intergenic -22176 NM_001145734 166979 Hs.669184 NM_152623 ENSG00000164287 CDC20B G6VTS76519 cell division cycle 20B protein-coding 310.75 chr1 169901650 169902284 + 1 NA Intergenic MER34B|LTR|ERV1 -8008 NM_181093 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 267.5-7 chr14 84369186 84369805 + 1 NA Intergenic Intergenic -902437 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 313.5-5 chr20 34056113 34056634 + 1 NA intron (NM_007367, intron 2 of 8) L2c|LINE|L2 7254 NR_039911 100616434 NR_039911 ENSG00000264616 MIR4755 mir-4755 microRNA 4755 ncRNA 218.5-31 chr5 14460555 14460816 + 1 NA intron (NM_007118, intron 34 of 56) intron (NM_007118, intron 34 of 56) -3298 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 199.5-33 chr3 188958095 188958430 + 1 NA Intergenic Intergenic -10623 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 249.5-18 chr3 70666076 70666531 + 1 NA Intergenic Intergenic -353665 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 149.25-12 chr11 14072041 14072343 + 1 NA intron (NM_006108, intron 3 of 15) MIRb|SINE|MIR 109469 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 210.75-21 chr14 78890133 78890456 + 1 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -309688 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 537.5 chr8 63173381 63174265 + 1 NA intron (NM_001277815, intron 3 of 5) intron (NM_001277815, intron 3 of 5) 4820 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 210.75-12 chr12 14161868 14162173 + 1 NA Intergenic MLT1G1|LTR|ERVL-MaLR -181664 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 192.75-62 chr7 79463524 79463748 + 1 NA non-coding (NR_038343, exon 4 of 4) non-coding (NR_038343, exon 4 of 4) 9676 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 222.5-53 chr8 111960753 111961076 + 1 NA Intergenic L1P4a|LINE|L1 584275 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 268.75 chr10 74258374 74258680 + 1 NA intron (NM_001369124, intron 3 of 9) intron (NM_001369124, intron 3 of 9) 81764 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 219.25-48 chr8 102471003 102471319 + 1 NA Intergenic L1MD1|LINE|L1 -58461 NM_015902 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 209.75-44 chr9 71966276 71966624 + 1 NA intron (NM_001365057, intron 2 of 2) intron (NM_001365057, intron 2 of 2) 54811 NR_157409 138241 Hs.534190 NM_182505 ENSG00000155621 C9orf85 - chromosome 9 open reading frame 85 protein-coding 327.5-5 chr2 22038675 22039053 + 1 NA Intergenic L1MB5|LINE|L1 -328212 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 210.5-26 chr21 25708994 25709408 + 1 NA intron (NR_072999, intron 7 of 9) MER58D|DNA|hAT-Charlie -25771 NM_002040 2551 Hs.473470 NM_002040 ENSG00000154727 GABPA E4TF1-60|E4TF1A|NFT2|NRF2|NRF2A|RCH04A07 GA binding protein transcription factor subunit alpha protein-coding 188.5-60 chr6 124221649 124221929 + 1 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -61216 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 188.25-22 chr18 11682938 11683365 + 1 NA Intergenic L1ME3Cz|LINE|L1 -6113 NM_182978 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 159.75-43 chr19 52612223 52612600 + 1 NA TTS (NM_001277945) TTS (NM_001277945) 15727 NR_023311 7696 Hs.373648 NM_003438 ZNF137P ZNF137|pHZ-30 zinc finger protein 137, pseudogene pseudo 247.5-9 chr10 76350008 76350287 + 1 NA intron (NM_001305581, intron 6 of 6) L1ME3E|LINE|L1 -537897 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 232.75-14 chr2 165663001 165663606 + 1 NA intron (NM_024969, intron 3 of 4) intron (NM_024969, intron 3 of 4) 90967 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 239.25-12 chr2 49204418 49204798 + 1 NA Intergenic HAL1|LINE|L1 -50081 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 241.5-26 chr6 129380700 129380996 + 1 NA intron (NM_000426, intron 34 of 64) intron (NM_000426, intron 34 of 64) 329329 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 374.75 chr3 117508916 117509719 + 1 NA Intergenic MIRb|SINE|MIR 181608 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 168.75-90 chr6 112757972 112758156 + 1 NA Intergenic L1ME1|LINE|L1 410734 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 251.75-6 chr13 72325099 72325357 + 1 NA Intergenic Intergenic 402401 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 153.75-93 chr9 17604168 17604357 + 1 NA intron (NM_003026, intron 1 of 8) MIRb|SINE|MIR 25196 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 166.75-83 chr7 111487365 111487661 + 1 NA intron (NM_032549, intron 2 of 5) intron (NM_032549, intron 2 of 5) 74778 NM_032549 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 382.25-2 chr2 33541248 33541929 + 1 NA intron (NM_015376, intron 11 of 16) L1ME4b|LINE|L1 27713 NM_015376 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 215.5-35 chr3 105391803 105392094 + 1 NA intron (NM_001243280, intron 1 of 14) L1PA10|LINE|L1 25039 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 301.5-8 chr2 115268596 115269090 + 1 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -40394 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 165.5-63 chr4 33249705 33249979 + 1 NA Intergenic Intergenic 790051 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 263.75-2 chr10 102564936 102565263 + 1 NA intron (NM_001178133, intron 3 of 10) MER58A|DNA|hAT-Charlie 61127 NM_001178133 51684 Hs.404089 NM_016169 ENSG00000107882 SUFU JBTS32|PRO1280|SUFUH|SUFUXL SUFU negative regulator of hedgehog signaling protein-coding 202.75-34 chr4 182274174 182274417 + 1 NA intron (NM_001080477, intron 1 of 27) intron (NM_001080477, intron 1 of 27) 30893 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 254.75-14 chr2 165756070 165756368 + 1 NA intron (NM_004482, intron 7 of 10) intron (NM_004482, intron 7 of 10) 38028 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 214.5-43 chr6 123337342 123337747 + 1 NA intron (NM_006073, intron 22 of 40) intron (NM_006073, intron 22 of 40) -102060 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 148.75-84 chr6 4006423 4006753 + 1 NA Intergenic L1M5|LINE|L1 -14712 NR_146784 8899 Hs.159014 NM_003913 ENSG00000112739 PRPF4B PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1 pre-mRNA processing factor 4B protein-coding 320.5-5 chr14 57337702 57338315 + 1 NA Intergenic Intergenic -52578 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 202.75 chr1 57266334 57266742 + 1 NA intron (NM_001353980, intron 5 of 5) L2c|LINE|L2 156574 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 327.5-9 chr5 93426822 93427373 + 1 NA intron (NR_109822, intron 2 of 2) intron (NR_109822, intron 2 of 2) 144246 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 168.25-46 chr3 123505527 123505806 + 1 NA intron (NM_001329786, intron 3 of 5) intron (NM_001329786, intron 3 of 5) -57121 NM_183357 111 Hs.593292 NM_183357 ENSG00000173175 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 200.75-3 chr1 166942909 166943146 + 1 NA intron (NM_199351, intron 3 of 9) intron (NM_199351, intron 3 of 9) 32513 NM_199351 387597 Hs.444835 NM_199351 ENSG00000143195 ILDR2 C1orf32|dJ782G3.1 immunoglobulin like domain containing receptor 2 protein-coding 355.75-5 chr14 60748737 60749338 + 1 NA intron (NM_001177963, intron 1 of 6) Tigger3b|DNA|TcMar-Tigger 14276 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 459.75-2 chr2 158190380 158191219 + 1 NA intron (NM_138803, intron 11 of 13) intron (NM_138803, intron 11 of 13) 24149 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 281.5-29 chr7 87269761 87270412 + 1 NA Intergenic MER63D|DNA|hAT-Blackjack -49499 NM_001329474 79161 Hs.619593 NM_024315 ENSG00000135185 TMEM243 C7orf23|MM-TRAG|MMTRAG transmembrane protein 243 protein-coding 313.75-4 chr10 69033220 69033885 + 1 NA Intergenic HAL1|LINE|L1 44749 NM_015634 26128 Hs.279580 NM_015634 ENSG00000198954 KIF1BP KBP|KIAA1279|TTC20 KIF1 binding protein protein-coding 220.5-9 chr14 39149878 39150250 + 1 NA 3' UTR (NM_177452, exon 5 of 5) 3' UTR (NM_177452, exon 5 of 5) 20269 NM_177452 122553 Hs.13303 NM_177452 ENSG00000182400 TRAPPC6B NEDMEBA|TPC6 trafficking protein particle complex 6B protein-coding 252.75-22 chr4 33511961 33512269 + 1 NA Intergenic MER57A-int|LTR|ERV1 527778 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 280.25-6 chr2 120167728 120168252 + 1 NA exon (NM_020909, exon 24 of 25) exon (NM_020909, exon 24 of 25) 55410 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 279.5-15 chr8 72191562 72192139 + 1 NA Intergenic Helitron1Na_Mam|RC|Helitron 59784 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 154.5-64 chr3 158096033 158096430 + 1 NA 3' UTR (NM_006884, exon 5 of 5) 3' UTR (NM_006884, exon 5 of 5) 9932 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 200.5-65 chrX 155112071 155112353 + 1 NA intron (NM_024332, intron 8 of 11) MER44C|DNA|TcMar-Tigger 40792 NM_024332 79184 Hs.558537 NM_024332 ENSG00000185515 BRCC3 BRCC36|C6.1A|CXorf53 BRCA1/BRCA2-containing complex subunit 3 protein-coding 183.75-25 chr13 27803310 27803618 + 1 NA Intergenic Charlie1a|DNA|hAT-Charlie 10981 NM_145657 219409 Hs.351785 NM_145657 ENSG00000169840 GSX1 GSH1|Gsh-1 GS homeobox 1 protein-coding 196.5-61 chr8 120386709 120387182 + 1 NA Intergenic L1PB3|LINE|L1 58205 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 245.5-18 chr2 188321626 188322087 + 1 NA intron (NR_045563, intron 2 of 12) AluSq2|SINE|Alu 24364 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 205.75-37 chr21 25321013 25321314 + 1 NA Intergenic Intergenic 110538 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 148.75-88 chr6 65451364 65451549 + 1 NA intron (NM_198283, intron 4 of 9) intron (NM_198283, intron 4 of 9) 128348 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 361.5-3 chr16 84591502 84591952 + 1 NA intron (NM_021149, intron 2 of 3) AluJb|SINE|Alu 26351 NM_021149 23406 Hs.289092 NM_021149 ENSG00000103187 COTL1 CLP coactosin like F-actin binding protein 1 protein-coding 330.5-2 chr13 62651576 62652272 + 1 NA Intergenic Intergenic 144768 NR_120404 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 184.25-56 chr5 104824461 104824859 + 1 NA Intergenic Intergenic -274814 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 232.25-19 chr2 68701367 68701739 + 1 NA Intergenic L1MEf|LINE|L1 -33258 NM_001007231 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 146.5-53 chr2 84824081 84824322 + 1 NA exon (NM_001277053, exon 6 of 7) exon (NM_001277053, exon 6 of 7) 56883 NM_001307978 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 165.75-10 chr1 177272916 177273367 + 1 NA intron (NM_021165, intron 4 of 7) intron (NM_021165, intron 4 of 7) -78445 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 182.25-27 chr2 155734242 155734556 + 1 NA Intergenic Intergenic 520532 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 164.75-64 chr4 170833483 170833721 + 1 NA Intergenic Intergenic -89867 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 226.5-10 chr16 29021147 29021590 + 1 NA Intergenic L1ME4b|LINE|L1 36316 NM_014387 27040 Hs.632179 NM_014387 ENSG00000213658 LAT IMD52|LAT1|pp36 linker for activation of T cells protein-coding 273.5-8 chr3 98967457 98967959 + 1 NA Intergenic L1MC4|LINE|L1 -66013 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 192.75-42 chr4 31531688 31531962 + 1 NA intron (NR_149121, intron 1 of 2) L1MA4|LINE|L1 25281 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 160.25-51 chr4 38823658 38824064 + 1 NA 3' UTR (NM_006068, exon 2 of 2) 3' UTR (NM_006068, exon 2 of 2) -19070 NM_003263 7096 Hs.621817 NM_003263 ENSG00000174125 TLR1 CD281|TIL|TIL. LPRS5|rsc786 toll like receptor 1 protein-coding 191.5-50 chr5 144923491 144923805 + 1 NA Intergenic L1PA15|LINE|L1 718257 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 186.5-16 chr13 34162085 34162353 + 1 NA Intergenic Intergenic -185824 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 298.25-4 chr2 143251742 143252486 + 1 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 122695 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 201.5-57 chr6 72491096 72491324 + 1 NA Intergenic Intergenic 124464 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 445.5-2 chr15 91193537 91194138 + 1 NA intron (NM_001323040, intron 2 of 12) intron (NM_001323040, intron 2 of 12) 92041 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 160.5-66 chr3 176136535 176136879 + 1 NA Intergenic L1PA15|LINE|L1 -107844 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 156.5-44 chr18 21714480 21714712 + 1 NA Intergenic MLT1F|LTR|ERVL-MaLR -9822 NM_138340 171586 Hs.397978 NM_138340 ENSG00000158201 ABHD3 LABH3 abhydrolase domain containing 3 protein-coding 146.75-105 chr7 73447870 73448064 + 1 NA intron (NM_001370402, intron 15 of 18) intron (NM_001370402, intron 15 of 18) 14189 NM_003508 8326 Hs.647029 NM_003508 ENSG00000188763 FZD9 CD349|FZD3 frizzled class receptor 9 protein-coding 156.75-46 chr2 11228834 11229141 + 1 NA intron (NM_001321643, intron 5 of 32) intron (NM_001321643, intron 5 of 32) 73520 NM_001282711 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 286.5-18 chr7 118067544 118067960 + 1 NA Intergenic Intergenic -116412 NM_016200 51691 Hs.655046 NM_016200 ENSG00000128534 LSM8 NAA38 LSM8 homolog, U6 small nuclear RNA associated protein-coding 170.5-16 chr13 69798233 69798456 + 1 NA intron (NM_001286725, intron 5 of 9) intron (NM_001286725, intron 5 of 9) -308869 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 524.5 chr22 28222280 28223103 + 1 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -237178 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 246.5-27 chr8 85187460 85187898 + 1 NA promoter-TSS (NM_001083589) promoter-TSS (NM_001083589) 14 NM_001083589 1875 Hs.445758 NM_001951 ENSG00000133740 E2F5 E2F-5 E2F transcription factor 5 protein-coding 170.25-13 chr12 20439226 20439469 + 1 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) 70102 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 268.5-7 chr12 92293824 92294180 + 1 NA Intergenic Intergenic -127529 NR_027932 574028 Hs.730377 NM_001025233 ENSG00000257127 CLLU1 - chronic lymphocytic leukemia up-regulated 1 ncRNA 166.75-23 chr13 57542507 57542770 + 1 NA Intergenic L1MA8|LINE|L1 -89106 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 211.75-11 chr14 47976859 47977441 + 1 NA Intergenic Intergenic -182136 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 216.75-12 chr18 1073387 1073767 + 1 NA Intergenic Intergenic -145584 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 207.5-5 chr1 197705044 197705406 + 1 NA intron (NR_125340, intron 3 of 19) intron (NR_125340, intron 3 of 19) 70255 NR_125340 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 152.75-15 chr10 19955220 19955535 + 1 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 138945 NM_032812 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 148.25-53 chr20 39706771 39707068 + 1 NA Intergenic Intergenic -297542 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 236.75-15 chr3 16309084 16309534 + 1 NA intron (NM_001352982, intron 10 of 10) L1MD3|LINE|L1 44097 NM_138381 92106 Hs.655449 NM_138381 ENSG00000154814 OXNAD1 - oxidoreductase NAD binding domain containing 1 protein-coding 216.5-32 chr5 52303224 52303531 + 1 NA Intergenic Intergenic 295346 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 147.25-59 chr3 117907634 117907810 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -216797 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 154.75-100 chr8 112462467 112462719 + 1 NA intron (NM_052900, intron 31 of 68) intron (NM_052900, intron 31 of 68) -180900 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 239.5-7 chr11 47496164 47496622 + 1 NA intron (NM_006560, intron 1 of 13) intron (NM_006560, intron 1 of 13) -1872 NM_198700 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP Elav-like family member 1 protein-coding 192.5-20 chr16 78246372 78246769 + 1 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 146916 NM_016373 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 237.75-9 chr15 76051644 76052098 + 1 NA Intergenic Intergenic -8114 NM_152335 123591 Hs.661411 NM_152335 ENSG00000169758 TMEM266 C15orf27|HVRP1|HsHVRP1|hTMEM266 transmembrane protein 266 protein-coding 147.25-74 chr5 107462064 107462350 + 1 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 208730 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 363.5-2 chr5 20500629 20501145 + 1 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 74826 NM_001349558 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 423.5 chr5 32332997 32333757 + 1 NA Intergenic AluJb|SINE|Alu -20438 NM_001294343 54545 Hs.481836 NM_019061 ENSG00000150712 MTMR12 3-PAP|PIP3AP myotubularin related protein 12 protein-coding 239.25-7 chr12 33627243 33627675 + 1 NA Intergenic Intergenic -187640 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 199.5-42 chr5 29888810 29889093 + 1 NA Intergenic Intergenic 8391 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 268.5-11 chr18 80140944 80141259 + 1 NA TTS (NM_014913) TTS (NM_014913) -6823 NR_028340 100130522 Hs.352602 NM_001145731 ENSG00000267270 PARD6G-AS1 - PARD6G antisense RNA 1 ncRNA 163.75-66 chr6 150348215 150348496 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR -20657 NM_001318495 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 263.75-23 chr9 26246371 26246917 + 1 NA Intergenic Intergenic 179969 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 261.25-5 chr17 73502249 73502820 + 1 NA intron (NM_001144952, intron 2 of 44) L1MC4|LINE|L1 -11149 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 154.5-3 chr1 44040657 44040841 + 1 NA Intergenic Charlie1|DNA|hAT-Charlie -9287 NM_001328630 6536 Hs.442590 NM_006934 ENSG00000196517 SLC6A9 GCENSG|GLYT1 solute carrier family 6 member 9 protein-coding 266.25-14 chr5 152643659 152644129 + 1 NA intron (NR_109877, intron 4 of 4) intron (NR_109877, intron 4 of 4) -238615 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 187.25-14 chr11 119837447 119837938 + 1 NA Intergenic CR1-3_Croc|LINE|CR1 108109 NR_120587 102724301 Hs.637640 NR_120587 ENSG00000254854 LOC102724301 - uncharacterized LOC102724301 ncRNA 182.5-35 chr21 25726562 25726877 + 1 NA intron (NM_001003703, intron 2 of 3) intron (NM_001003703, intron 2 of 3) -8253 NM_002040 2551 Hs.473470 NM_002040 ENSG00000154727 GABPA E4TF1-60|E4TF1A|NFT2|NRF2|NRF2A|RCH04A07 GA binding protein transcription factor subunit alpha protein-coding 241.25 chr1 68137144 68137688 + 1 NA intron (NM_001193334, intron 10 of 10) intron (NM_001193334, intron 10 of 10) 46194 NR_031664 100302279 NR_031664 ENSG00000221203 MIR1262 MIRN1262|hsa-mir-1262|mir-1262 microRNA 1262 ncRNA 237.5-19 chr20 51695872 51696156 + 1 NA intron (NM_006045, intron 6 of 27) intron (NM_006045, intron 6 of 27) 72376 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 386.75-4 chr5 129977915 129978650 + 1 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 73817 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 153.5-111 chr8 110712537 110712715 + 1 NA Intergenic Intergenic 314807 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 249.5-19 chr3 119871105 119871512 + 1 NA intron (NM_002093, intron 8 of 11) intron (NM_002093, intron 8 of 11) 88598 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 306.75-9 chr3 145698226 145698739 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR 370703 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 319.25-6 chr6 123597391 123597947 + 1 NA intron (NM_001256020, intron 1 of 8) Tigger1|DNA|TcMar-Tigger 39281 NM_006073 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 231.5-2 chr1 225915400 225915725 + 1 NA Intergenic Intergenic 6580 NR_106799 102466270 NR_106799 ENSG00000284519 MIR6741 hsa-mir-6741 microRNA 6741 ncRNA 155.5-20 chr12 25732266 25732481 + 1 NA Intergenic L1M4b|LINE|L1 -83795 NM_001352232 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 156.25-51 chr21 30618090 30618273 + 1 NA Intergenic Charlie1b|DNA|hAT-Charlie 1756 NM_181615 337975 Hs.553697 NM_181615 ENSG00000244624 KRTAP20-1 KAP20.1 keratin associated protein 20-1 protein-coding 324.5-2 chr11 75927398 75927812 + 1 NA intron (NM_003369, intron 6 of 14) L2a|LINE|L2 112395 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 299.25-8 chr2 219716006 219716482 + 1 NA Intergenic Intergenic 88614 NM_005070 6508 Hs.1176 NM_005070 ENSG00000114923 SLC4A3 AE3|CAE3/BAE3|SLC2C solute carrier family 4 member 3 protein-coding 274.25-5 chr2 179592401 179592893 + 1 NA intron (NR_148056, intron 3 of 9) intron (NR_148056, intron 3 of 9) -6741 NM_001282725 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 207.25-45 chr5 40784524 40785115 + 1 NA intron (NM_001355028, intron 1 of 9) MIRb|SINE|MIR 13358 NM_001355035 5562 Hs.43322 NM_006251 ENSG00000132356 PRKAA1 AMPK|AMPKa1 protein kinase AMP-activated catalytic subunit alpha 1 protein-coding 360.5-3 chrX 77852621 77853363 + 1 NA intron (NM_032121, intron 7 of 9) intron (NM_032121, intron 7 of 9) 42443 NM_001367916 84061 Hs.323562 NM_032121 ENSG00000102158 MAGT1 IAP|MRX95|OST3B|PRO0756|SLC58A1|XMEN|bA217H1.1 magnesium transporter 1 protein-coding 194.5-63 chr9 102670965 102671376 + 1 NA Intergenic MER20|DNA|hAT-Charlie 151533 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 246.25-9 chr10 92103728 92104306 + 1 NA intron (NM_001178137, intron 7 of 9) intron (NM_001178137, intron 7 of 9) 139262 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 201.5-32 chr20 42537906 42538287 + 1 NA intron (NM_133170, intron 7 of 31) MIR|SINE|MIR -147387 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 168.25-25 chr16 7699642 7699968 + 1 NA intron (NM_145893, intron 12 of 13) intron (NM_145893, intron 12 of 13) 366960 NM_145892 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 241.25-9 chr14 35651629 35651911 + 1 NA intron (NM_014990, intron 30 of 40) intron (NM_014990, intron 30 of 40) 111161 NR_135620 107399303 Hs.742611 NR_135620 SNORA101B ZL4 small nucleolar RNA, H/ACA box 101B snoRNA 183.75-38 chr18 61232820 61233205 + 1 NA Intergenic MER106B|DNA|hAT-Charlie -100418 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 212.5-49 chr7 29130325 29130902 + 1 NA intron (NM_001371261, intron 2 of 13) MIRb|SINE|MIR 5580 NR_120523 101928168 Hs.666750 NR_120523 ENSG00000285412 LOC101928168 - uncharacterized LOC101928168 ncRNA 306.25-4 chr10 121080338 121080849 + 1 NA Intergenic Intergenic 229231 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 247.75-3 chr11 26508121 26508521 + 1 NA intron (NM_031418, intron 5 of 26) intron (NM_031418, intron 5 of 26) 34419 NM_001313727 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 159.75-12 chr10 43814486 43814699 + 1 NA Intergenic Intergenic -24175 NR_002726 10151 Hs.632956 NR_002726 HNRNPA3P1 D10S102|FBRNP|HNRPA3|HNRPA3P1 heterogeneous nuclear ribonucleoprotein A3 pseudogene 1 pseudo 204.25-23 chr2 88291783 88292072 + 1 NA Intergenic L1MEf|LINE|L1 118788 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 281.5-22 chr3 152575304 152575693 + 1 NA Intergenic Intergenic -234508 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 183.5-56 chr4 123430779 123431110 + 1 NA Intergenic Intergenic 31404 NM_005841 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 207.75-21 chr2 78389187 78389500 + 1 NA Intergenic L1MA4|LINE|L1 -98612 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 154.25-82 chr7 159134611 159134975 + 1 NA intron (NR_130758, intron 2 of 12) AluY|SINE|Alu 10074 NM_003382 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 191.5-58 chr8 107158105 107158624 + 1 NA Intergenic L2b|LINE|L2 178151 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 179.5-4 chr1 195234038 195234360 + 1 NA Intergenic MIR|SINE|MIR 854516 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 184.5-33 chr15 98112301 98112786 + 1 NA Intergenic Intergenic -23790 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 258.5-14 chr2 64202973 64203339 + 1 NA intron (NR_033837, intron 1 of 5) intron (NR_033837, intron 1 of 5) 2329 NR_033837 150992 Hs.272318 NR_033837 ENSG00000230923 LINC00309 NCRNA00309 long intergenic non-protein coding RNA 309 ncRNA 289.25-11 chr3 179228364 179228952 + 1 NA intron (NM_006218, intron 17 of 20) Charlie1a|DNA|hAT-Charlie 22957 NM_014407 27094 Hs.591285 NM_014407 ENSG00000171121 KCNMB3 BKBETA3|HBETA3|K(VCA)BETA-3|KCNMB2|KCNMBL|SLO-BETA-3|SLOBETA3 potassium calcium-activated channel subfamily M regulatory beta subunit 3 protein-coding 376.25-3 chr8 53304810 53305327 + 1 NA Intergenic L1MC4a|LINE|L1 -53371 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 183.25-73 chr8 80459660 80460122 + 1 NA Intergenic Intergenic -25702 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 331.25-8 chr8 124579620 124580328 + 1 NA intron (NM_001363294, intron 6 of 13) intron (NM_001363294, intron 6 of 13) 40851 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 202.5-36 chr21 22931420 22931776 + 1 NA Intergenic L1PA17|LINE|L1 -147686 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 146.75-74 chr3 99609702 99609926 + 1 NA Intergenic L1PREC2|LINE|L1 -28780 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 211.5-27 chr2 57506305 57506733 + 1 NA Intergenic L1MD1|LINE|L1 -401132 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 233.5-9 chr2 37663396 37663714 + 1 NA intron (NM_001270436, intron 1 of 1) intron (NM_001270436, intron 1 of 1) 8644 NM_006449 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 183.5-41 chr22 44875820 44876106 + 1 NA Intergenic L1MEf|LINE|L1 123405 NM_181335 23779 Hs.102336 NM_181335 ENSG00000241484 ARHGAP8 BPGAP1|PP610 Rho GTPase activating protein 8 protein-coding 321.25-6 chr7 84612401 84612790 + 1 NA Intergenic Intergenic 80119 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 246.75-3 chr13 31729491 31729868 + 1 NA Intergenic Intergenic -9847 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 296.25-14 chr8 141281890 141282560 + 1 NA Intergenic Intergenic -27596 NM_001286646 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45 member 4 protein-coding 341.25-4 chr4 45330664 45331264 + 1 NA Intergenic L2|LINE|L2 -604330 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 215.25-45 chr8 73462470 73462950 + 1 NA intron (NM_001164383, intron 8 of 9) intron (NM_001164383, intron 8 of 9) 42636 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 152.25-81 chr5 112282278 112282446 + 1 NA intron (NM_001347887, intron 2 of 23) intron (NM_001347887, intron 2 of 23) 54079 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 156.25-4 chr1 224879873 224880206 + 1 NA Intergenic Intergenic -49615 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 240.25-23 chr7 46942487 46943049 + 1 NA Intergenic Intergenic -245646 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 242.25-2 chr1 197517175 197517585 + 1 NA intron (NR_125340, intron 17 of 19) intron (NR_125340, intron 17 of 19) 249128 NR_047564 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 326.5-4 chr6 81077180 81077808 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 675187 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 208.5-44 chr3 185668764 185669073 + 1 NA intron (NR_138486, intron 9 of 15) MIR|SINE|MIR -44334 NR_126326 646600 Hs.647949 NR_027317 ENSG00000163915 IGF2BP2-AS1 C3orf65 IGF2BP2 antisense RNA 1 ncRNA 294.5-3 chr14 49627013 49627443 + 1 NA intron (NM_001083908, intron 1 of 1) intron (NM_001083908, intron 1 of 1) 6429 NM_002408 4247 Hs.93338 NM_002408 ENSG00000168282 MGAT2 CDG2A|CDGS2|GLCNACTII|GNT-II|GNT2 mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase protein-coding 174.5-4 chr1 71436874 71437212 + 1 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 355719 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 146.25-90 chr7 110893382 110893672 + 1 NA intron (NM_032549, intron 4 of 5) L1ME1|LINE|L1 -197479 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 213.25-39 chr5 132413449 132413794 + 1 NA intron (NR_161242, intron 1 of 3) L1ME3G|LINE|L1 2692 NR_161242 441108 Hs.658288 NM_001013717 C5orf56 - chromosome 5 open reading frame 56 ncRNA 252.5-31 chrX 87522000 87522342 + 1 NA intron (NM_057162, intron 1 of 10) intron (NM_057162, intron 1 of 10) 4369 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 269.75-14 chr7 89314864 89315342 + 1 NA intron (NM_181646, intron 2 of 3) MSTA|LTR|ERVL-MaLR -519366 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 152.75-72 chr5 15808938 15809316 + 1 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -126055 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 146.5-86 chr5 30722490 30722669 + 1 NA Intergenic L1MEd|LINE|L1 -471107 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 264.5-4 chr11 111274398 111274937 + 1 NA intron (NM_198498, intron 2 of 4) (TTTATATAA)n|Simple_repeat|Simple_repeat -23879 NM_001271458 120376 Hs.31409 NM_001136105 ENSG00000214290 COLCA2 C11orf93|CASC13|LOH11CR1G colorectal cancer associated 2 protein-coding 230.75-38 chr7 28566522 28566802 + 1 NA intron (NM_182899, intron 3 of 9) intron (NM_182899, intron 3 of 9) -119471 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 219.25-28 chr20 58911937 58912351 + 1 NA TTS (NM_001077489) TTS (NM_001077489) 19981 NR_132272 2778 Hs.125898 NM_000516 ENSG00000087460 GNAS AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI GNAS complex locus protein-coding 282.25-5 chr22 26640444 26640827 + 1 NA Intergenic L1MA7|LINE|L1 -16847 NR_003491 440823 Hs.517502 NR_003491 ENSG00000225783 MIAT C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT myocardial infarction associated transcript ncRNA 271.5-11 chr22 47986724 47987152 + 1 NA Intergenic L1MB7|LINE|L1 -287426 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 153.5-37 chr16 8301193 8301453 + 1 NA Intergenic Intergenic 288515 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 179.5-59 chr4 179599038 179599322 + 1 NA Intergenic Intergenic 1559969 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 274.75-6 chr17 57404155 57404542 + 1 NA intron (NM_001322250, intron 6 of 13) intron (NM_001322250, intron 6 of 13) 119249 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 250.75-6 chr12 99353840 99354245 + 1 NA intron (NM_152788, intron 12 of 25) intron (NM_152788, intron 12 of 25) -198952 NM_001352190 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 197.25-14 chr11 92196352 92196589 + 1 NA Intergenic Intergenic -28564 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 235.5-14 chr2 22069897 22070292 + 1 NA Intergenic L1MA2|LINE|L1 -359442 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 195.5-8 chr11 30765631 30766020 + 1 NA Intergenic Intergenic -179472 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 192.75-40 chr3 146825729 146826026 + 1 NA Intergenic Intergenic -96046 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 164.25-19 chr11 37469441 37469659 + 1 NA Intergenic AluSz|SINE|Alu -469051 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 281.5-16 chr18 3192324 3192843 + 1 NA intron (NM_019856, intron 3 of 36) intron (NM_019856, intron 3 of 36) 27385 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 197.25-26 chr2 76370889 76371268 + 1 NA Intergenic Intergenic -614887 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 147.5-66 chr3 191387695 191387925 + 1 NA intron (NM_178335, intron 10 of 11) intron (NM_178335, intron 10 of 11) -37714 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 274.75-15 chr5 82712735 82713349 + 1 NA Intergenic Intergenic -127113 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 293.5-2 chr14 46063332 46063890 + 1 NA promoter-TSS (NR_102701) promoter-TSS (NR_102701) -548 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 210.5-39 chr6 83999711 83999962 + 1 NA Intergenic Intergenic -33936 NM_001346543 112609 Hs.370055 NM_138409 ENSG00000135324 MRAP2 C6orf117|bA51G5.2 melanocortin 2 receptor accessory protein 2 protein-coding 205.5-5 chr10 88107863 88108168 + 1 NA Intergenic L2|LINE|L2 244390 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 162.25-12 chr12 12415839 12416110 + 1 NA intron (NM_001300742, intron 2 of 3).2 L1PA6|LINE|L1 58896 NM_001300742 118426 Hs.504805 NM_058169 ENSG00000165714 BORCS5 LOH12CR1|LOH1CR12 BLOC-1 related complex subunit 5 protein-coding 311.5-2 chr1 210818671 210819315 + 1 NA intron (NM_002238, intron 7 of 10) intron (NM_002238, intron 7 of 10) 314381 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 318.25-6 chr8 75716743 75717235 + 1 NA Intergenic LTR81|LTR|Gypsy 177021 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 230.5-17 chr2 223223323 223223683 + 1 NA Intergenic Intergenic 171573 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 251.75-25 chr6 141137057 141137614 + 1 NA Intergenic Intergenic 453521 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 351.75-9 chr9 29234953 29235478 + 1 NA Intergenic Intergenic -21614 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 146.5-96 chr6 145379422 145379670 + 1 NA Intergenic L1MEb|LINE|L1 307331 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 212.75-23 chr4 42944235 42944521 + 1 NA intron (NM_001080476, intron 1 of 3) L2a|LINE|L2 51112 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 225.5-55 chr9 37323903 37324262 + 1 NA intron (NR_110317, intron 4 of 7) intron (NR_110317, intron 4 of 7) -98614 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 164.25-54 chr22 27265743 27265944 + 1 NA Intergenic MIR|SINE|MIR -41164 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 366.25-8 chr4 35422504 35423083 + 1 NA Intergenic Intergenic 821146 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 250.5-25 chr7 80478564 80478978 + 1 NA intron (NM_001102386, intron 4 of 7) intron (NM_001102386, intron 4 of 7) 33293 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 188.5-63 chr7 3558200 3558467 + 1 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 257081 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 229.5-27 chr4 99501638 99501904 + 1 NA Intergenic L1ME3B|LINE|L1 -9250 NM_032149 84103 Hs.97501 NM_032149 ENSG00000138813 C4orf17 - chromosome 4 open reading frame 17 protein-coding 256.5-21 chr8 110206315 110206817 + 1 NA Intergenic Intergenic -230795 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 207.5-22 chr2 60702458 60702701 + 1 NA Intergenic AluJb|SINE|Alu -53689 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 221.5-45 chr6 77277133 77277530 + 1 NA Intergenic L1MEf|LINE|L1 186691 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 198.25-36 chr4 33390349 33390690 + 1 NA Intergenic Intergenic 649374 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 387.75 chr14 43592715 43593257 + 1 NA Intergenic L1M2|LINE|L1 914297 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 231.25-13 chr14 51727383 51727907 + 1 NA intron (NM_001042481, intron 14 of 14) intron (NM_001042481, intron 14 of 14) 10362 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 229.5-8 chr12 47366722 47366984 + 1 NA Intergenic L2c|LINE|L2 -2584 NR_039715 100616478 NR_039715 ENSG00000264906 MIR4494 - microRNA 4494 ncRNA 240.25-20 chr5 161841069 161841506 + 1 NA Intergenic Intergenic -5904 NM_000806 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 376.5-2 chr15 89367621 89368296 + 1 NA promoter-TSS (NR_133003) promoter-TSS (NR_133003) -59 NR_029692 407051 NR_029692 ENSG00000284329 MIR9-3 MIRN9-3|hsa-mir-9-3|miRNA9-3|mir-9-3 microRNA 9-3 ncRNA 275.5-5 chr12 21272953 21273436 + 1 NA intron (NM_021094, intron 13 of 13) LTR40a|LTR|ERVL 61723 NM_021094 6579 Hs.46440 NM_005075 ENSG00000084453 SLCO1A2 OATP|OATP-A|OATP1A2|SLC21A3 solute carrier organic anion transporter family member 1A2 protein-coding 153.5-95 chr7 25439310 25439476 + 1 NA Intergenic L1PA11|LINE|L1 -210907 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 287.5-18 chr5 163722873 163723514 + 1 NA Intergenic Intergenic 217574 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 163.5-10 chr1 167166835 167167176 + 1 NA Intergenic Intergenic 28800 NR_110811 101928484 Hs.568496 NR_110811 LINC01363 RBSG4 long intergenic non-protein coding RNA 1363 ncRNA 219.25-34 chr3 170563752 170564006 + 1 NA intron (NM_020949, intron 1 of 7) intron (NM_020949, intron 1 of 7) 22196 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 217.75-5 chr10 19097738 19098278 + 1 NA intron (NM_001142308, intron 4 of 39) MER41C|LTR|ERV1 49207 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 220.5-4 chr11 58105797 58106236 + 1 NA intron (NM_001005212, intron 2 of 2) L1MA10|LINE|L1 13428 NM_001005211 219954 Hs.632122 NM_001005211 ENSG00000172377 OR9I1 OR11-228 olfactory receptor family 9 subfamily I member 1 protein-coding 183.75-11 chr10 66047702 66048080 + 1 NA intron (NM_001127384, intron 15 of 17) L1PA14|LINE|L1 476466 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 204.5-35 chr5 164337884 164338359 + 1 NA Intergenic Intergenic 129281 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 500.5-2 chr4 33275038 33275775 + 1 NA Intergenic Intergenic 764487 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 212.75-35 chr8 88616331 88616624 + 1 NA Intergenic Intergenic -288994 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 200.5-2 chr1 190762234 190762789 + 1 NA intron (NR_033922, intron 2 of 4) intron (NR_033922, intron 2 of 4) 137621 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 211.5-19 chr17 55361461 55361862 + 1 NA Intergenic L1MB8|LINE|L1 60174 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 151.5-35 chr16 20514503 20514750 + 1 NA Intergenic Intergenic 61741 NM_001105069 348158 Hs.298252 NM_182617 ENSG00000066813 ACSM2B ACSM2|HXMA|HYST1046 acyl-CoA synthetase medium chain family member 2B protein-coding 295.25-3 chr3 96821795 96822279 + 1 NA intron (NM_001080448, intron 1 of 17) intron (NM_001080448, intron 1 of 17) 7443 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 340.5-3 chr8 125981799 125982279 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -30842 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 180.25-34 chr2 123934628 123934931 + 1 NA Intergenic L1PB4|LINE|L1 90395 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 186.5-56 chr5 23845116 23845406 + 1 NA Intergenic L1MA4A|LINE|L1 -106087 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 263.25-19 chr4 164433355 164433672 + 1 NA Intergenic Intergenic -50258 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 157.75-60 chr2 234232235 234232472 + 1 NA Intergenic Intergenic 181651 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 228.25-7 chr16 51551636 51551957 + 1 NA Intergenic Intergenic -210723 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 149.25-8 chr10 27929395 27929764 + 1 NA intron (NM_001290021, intron 9 of 13) L1M7|LINE|L1 52292 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 163.5-120 chr9 34947338 34947656 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -9990 NM_001304333 23349 Hs.7989 NM_015297 ENSG00000122733 PHF24 - PHD finger protein 24 protein-coding 238.5-3 chr1 118449082 118449439 + 1 NA Intergenic MSTA-int|LTR|ERVL-MaLR -264032 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 184.5-39 chr18 8289247 8289578 + 1 NA intron (NM_002845, intron 17 of 30) (TA)n|Simple_repeat|Simple_repeat 77622 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 189.75-14 chr1 189831058 189831543 + 1 NA Intergenic L1PA12|LINE|L1 644710 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 187.75-59 chr5 163284167 163284372 + 1 NA Intergenic AluY|SINE|Alu -153302 NM_001364019 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 148.75-102 chr8 132176737 132176893 + 1 NA intron (NM_001204824, intron 4 of 14) intron (NM_001204824, intron 4 of 14) -71550 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 146.25-48 chr2 232491376 232491651 + 1 NA Intergenic L2b|LINE|L2 -3679 NM_004826 9427 Hs.26880 NM_004826 ENSG00000171551 ECEL1 DA5D|DINE|ECEX|XCE endothelin converting enzyme like 1 protein-coding 176.75-72 chr5 142947123 142947506 + 1 NA intron (NR_146198, intron 11 of 22) intron (NR_146198, intron 11 of 22) -78404 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 146.75-12 chr10 42190815 42190977 + 1 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat 177149 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 204.75-31 chr3 41572816 41573181 + 1 NA intron (NR_136342, intron 29 of 34) intron (NR_136342, intron 29 of 34) 373493 NM_001098209 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 189.25-30 chr2 222597907 222598293 + 1 NA intron (NR_130154, intron 17 of 17) intron (NR_130154, intron 17 of 17) 57992 NM_005687 10056 Hs.471452 NM_005687 ENSG00000116120 FARSB FARSLB|FRSB|HSPC173|NEDBLLA|PheHB|PheRS|RILDBC phenylalanyl-tRNA synthetase subunit beta protein-coding 265.5-23 chr8 110301810 110302333 + 1 NA Intergenic L1MEd|LINE|L1 -326300 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 264.5-2 chr10 7277906 7278178 + 1 NA intron (NM_001029880, intron 6 of 20) intron (NM_001029880, intron 6 of 20) -91258 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 184.75-53 chr4 60116368 60116563 + 1 NA Intergenic Intergenic -806154 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 166.5-87 chr8 27298973 27299264 + 1 NA intron (NM_171982, intron 1 of 5) intron (NM_171982, intron 1 of 5) 12154 NM_001362813 23087 Hs.104223 NM_171982 ENSG00000104228 TRIM35 HLS5|MAIR tripartite motif containing 35 protein-coding 305.25 chr12 59866396 59866901 + 1 NA Intergenic LTR82B|LTR|ERVL 177278 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 207.75-31 chr4 37151480 37151841 + 1 NA Intergenic L1ME3Cz|LINE|L1 90331 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 359.75-3 chr7 49697960 49698791 + 1 NA Intergenic L1MA7|LINE|L1 -75263 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 205.25-17 chr2 64122640 64123068 + 1 NA intron (NM_020651, intron 1 of 6) MIR3|SINE|MIR 21566 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 159.5-16 chr14 25836594 25836984 + 1 NA Intergenic Intergenic 716641 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 273.25-20 chr8 129576363 129576832 + 1 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) -1579 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 227.75-24 chr3 78572601 78573034 + 1 NA Intergenic MER34|LTR|ERV1 446642 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 253.5-26 chr7 131410079 131410497 + 1 NA intron (NM_001321316, intron 6 of 17) MIRb|SINE|MIR 82412 NM_013255 4289 Hs.44693 NM_013255 ENSG00000128585 MKLN1 TWA2 muskelin 1 protein-coding 237.25-8 chr2 54437478 54437857 + 1 NA Intergenic L1MC4|LINE|L1 -18660 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 203.5-22 chr18 9381326 9381594 + 1 NA intron (NM_020648, intron 3 of 4) intron (NM_020648, intron 3 of 4) 46687 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 150.5-27 chr11 73351279 73351447 + 1 NA intron (NM_014786, intron 2 of 20) intron (NM_014786, intron 2 of 20) -25036 NM_152222 84957 Hs.533720 NM_032871 ENSG00000054967 RELT AI3C|TNFRSF19L|TRLT RELT TNF receptor protein-coding 303.5-10 chr3 61478837 61479235 + 1 NA Intergenic Intergenic -82535 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 192.75-58 chr6 66486770 66487016 + 1 NA Intergenic Intergenic 699014 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 202.5-63 chr8 120205710 120206042 + 1 NA intron (NM_021110, intron 9 of 47) intron (NM_021110, intron 9 of 47) 80774 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 234.5-27 chr8 126812039 126812416 + 1 NA Intergenic MIRb|SINE|MIR -200927 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 244.25-10 chr16 22717107 22717622 + 1 NA Intergenic L2|LINE|L2 -96798 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 270.5-12 chr2 139504979 139505535 + 1 NA Intergenic L1MC1|LINE|L1 607933 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 161.75-23 chr17 54180129 54180377 + 1 NA Intergenic Intergenic 357326 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 231.5-12 chr2 28551429 28552009 + 1 NA intron (NM_001170585, intron 16 of 56) MIR|SINE|MIR -14638 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 214.25-37 chr8 121690660 121691148 + 1 NA Intergenic L1PB4|LINE|L1 -49464 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 253.5-18 chr4 99529277 99529658 + 1 NA intron (NM_032149, intron 4 of 8) intron (NM_032149, intron 4 of 8) 18446 NM_032149 84103 Hs.97501 NM_032149 ENSG00000138813 C4orf17 - chromosome 4 open reading frame 17 protein-coding 168.75-38 chr19 45229558 45229930 + 1 NA intron (NM_138568, intron 2 of 9) AluSp|SINE|Alu 4467 NM_138568 90332 Hs.337557 NM_138568 ENSG00000283632 EXOC3L2 XTP7 exocyst complex component 3 like 2 protein-coding 199.75-36 chr3 61474984 61475216 + 1 NA Intergenic Intergenic -86471 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 210.75-19 chr14 71495546 71495793 + 1 NA intron (NM_001284247, intron 1 of 23) L1M4|LINE|L1 7808 NR_027046 145474 Hs.658241 NR_027046 LOC145474 - uncharacterized LOC145474 ncRNA 267.5-5 chr12 12907254 12907667 + 1 NA intron (NM_003979, intron 1 of 3) intron (NM_003979, intron 1 of 3) -8369 NR_030345 693199 NR_030345 ENSG00000283759 MIR614 MIRN614|hsa-mir-614 microRNA 614 ncRNA 361.5-4 chr7 42544497 42544915 + 1 NA Intergenic MER39B|LTR|ERV1 161741 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 163.75-68 chr8 52086648 52086831 + 1 NA Intergenic Intergenic -107623 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 242.75-25 chr6 164467550 164468065 + 1 NA Intergenic Intergenic 354256 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 187.5-19 chr15 67750880 67751209 + 1 NA intron (NM_001206804, intron 19 of 21) intron (NM_001206804, intron 19 of 21) -74465 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 246.5-2 chr1 84222014 84222358 + 1 NA intron (NM_182948, intron 9 of 9) L1MA4A|LINE|L1 40554 NM_001242862 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 245.75 chr1 68566977 68567489 + 1 NA Intergenic L1MEd|LINE|L1 -70151 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 180.5-53 chr4 161742808 161743031 + 1 NA intron (NM_001128428, intron 6 of 14) intron (NM_001128428, intron 6 of 14) -279814 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 271.25-15 chr6 41989635 41990047 + 1 NA intron (NM_001136017, intron 1 of 4) L1MC1|LINE|L1 -47993 NM_001287427 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 373.5-7 chr6 114889522 114890094 + 1 NA Intergenic Intergenic 754027 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 192.75-21 chr14 53795491 53795723 + 1 NA Intergenic MIRb|SINE|MIR 152877 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 196.25-19 chr15 64556650 64556938 + 1 NA intron (NM_015042, intron 1 of 8) intron (NM_015042, intron 1 of 8) 57374 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 183.25-19 chr13 95835545 95835967 + 1 NA intron (NM_020121, intron 37 of 38) intron (NM_020121, intron 37 of 38) 158617 NM_006260 5611 Hs.59214 NM_006260 ENSG00000102580 DNAJC3 ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI DnaJ heat shock protein family (Hsp40) member C3 protein-coding 375.5 chr1 247930229 247930685 + 1 NA Intergenic Intergenic -3309 NM_001355235 127608 NM_001355235 ENSG00000177275 OR2AJ1 OR2AJ1P|OR2AJ1Q olfactory receptor family 2 subfamily AJ member 1 protein-coding 210.5-33 chr5 29335609 29335933 + 1 NA Intergenic L1PA11|LINE|L1 60205 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 160.75-77 chr3 88779438 88779711 + 1 NA Intergenic THE1D|LTR|ERVL-MaLR -328047 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 275.5-12 chr21 35013559 35013969 + 1 NA intron (NM_001754, intron 2 of 8) L1ME4a|LINE|L1 25662 NR_026812 80215 Hs.672131 NM_025143 RUNX1-IT1 C21orf96 RUNX1 intronic transcript 1 ncRNA 288.5-9 chr22 37889942 37890361 + 1 NA TTS (NM_016091) TTS (NM_016091) -16146 NM_033386 85377 Hs.517610 NM_033386 ENSG00000100139 MICALL1 MICAL-L1|MIRAB13 MICAL like 1 protein-coding 173.5-38 chr20 1199590 1199883 + 1 NA Intergenic MIR3|SINE|MIR -3718 NM_001009612 400831 Hs.148503 NM_001009612 ENSG00000215595 C20orf202 - chromosome 20 open reading frame 202 protein-coding 232.5-27 chr21 29665044 29665449 + 1 NA intron (NM_000830, intron 4 of 16) intron (NM_000830, intron 4 of 16) 69206 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 223.5-31 chr5 8887309 8887565 + 1 NA Intergenic L1ME3|LINE|L1 47705 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 156.5-88 chr5 106564644 106564846 + 1 NA Intergenic (TATGATA)n|Simple_repeat|Simple_repeat 446269 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 235.5-6 chr11 94052840 94053207 + 1 NA intron (NM_001098672, intron 2 of 19) L1MA3|LINE|L1 31669 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 243.5-25 chr9 25161344 25161642 + 1 NA Intergenic Intergenic 517365 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 180.25-32 chr2 63697153 63697550 + 1 NA Intergenic MIR|SINE|MIR 108200 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 300.25-10 chr3 104773913 104774416 + 1 NA Intergenic Intergenic -592549 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 232.75-10 chr14 74076946 74077246 + 1 NA intron (NM_001278593, intron 1 of 11) intron (NM_001278593, intron 1 of 11) 7357 NM_005589 4329 Hs.293970 NM_005589 ENSG00000119711 ALDH6A1 MMSADHA|MMSDH aldehyde dehydrogenase 6 family member A1 protein-coding 311.5-13 chr6 50664439 50665033 + 1 NA Intergenic Intergenic -48808 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 174.5-12 chr10 72987869 72988127 + 1 NA Intergenic L1ME1|LINE|L1 -33192 NM_001318125 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 160.5-53 chr2 159593742 159593986 + 1 NA intron (NM_001329857, intron 1 of 36) intron (NM_001329857, intron 1 of 36) -21430 NR_110587 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 341.5-7 chr8 118736303 118736865 + 1 NA Intergenic Intergenic -114621 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 163.75-51 chr4 67072352 67072724 + 1 NA Intergenic Intergenic 349462 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 221.75-5 chr10 125727023 125727411 + 1 NA intron (NM_015608, intron 6 of 23) intron (NM_015608, intron 6 of 23) 7508 NM_001202438 26098 Hs.468688 NM_015608 ENSG00000107938 EDRF1 C10orf137 erythroid differentiation regulatory factor 1 protein-coding 152.5-47 chr18 73561496 73561751 + 1 NA Intergenic L1MEg|LINE|L1 236682 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 487.25 chr1 44190506 44191609 + 1 NA Intergenic Intergenic -22414 NM_001034023 55929 Hs.8008 NM_019100 ENSG00000178028 DMAP1 DNMAP1|DNMTAP1|EAF2|MEAF2|SWC4 DNA methyltransferase 1 associated protein 1 protein-coding 192.5-12 chr13 85929862 85930280 + 1 NA Intergenic Intergenic -130652 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 214.5-4 chr10 75101373 75101673 + 1 NA intron (NM_001007272, intron 1 of 3) MIRb|SINE|MIR -2033 NM_016364 51207 Hs.178170 NM_016364 ENSG00000079393 DUSP13 BEDP|DUSP13A|DUSP13B|MDSP|SKRP4|TMDP dual specificity phosphatase 13 protein-coding 210.5-7 chr10 92281537 92281929 + 1 NA intron (NM_014912, intron 1 of 9) Charlie1a|DNA|hAT-Charlie 9345 NM_014912 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 286.25-12 chr7 144742371 144743106 + 1 NA intron (NM_001042482, intron 3 of 7) A-rich|Low_complexity|Low_complexity -3840 NR_146936 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 256.5-10 chr2 55402040 55402517 + 1 NA intron (NM_001254943, intron 2 of 33) Charlie1a|DNA|hAT-Charlie 17578 NM_001135597 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL coiled-coil domain containing 88A protein-coding 232.75-36 chr8 136053394 136053781 + 1 NA Intergenic Intergenic -477211 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 324.25-12 chr8 82719924 82720311 + 1 NA Intergenic Intergenic -191987 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 297.75-17 chr7 22025210 22025706 + 1 NA Intergenic Intergenic -79559 NM_001127370 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 243.25-29 chr6 153852228 153852576 + 1 NA Intergenic Intergenic -158094 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 166.5-28 chr16 5995428 5995778 + 1 NA Intergenic Intergenic -23421 NM_018723 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 262.75-9 chr17 28461413 28461800 + 1 NA Intergenic Intergenic -12038 NM_003984 9058 Hs.102307 NM_003984 ENSG00000007216 SLC13A2 NADC1|NaCT|NaDC-1|SDCT1 solute carrier family 13 member 2 protein-coding 301.5-6 chr18 65968174 65968606 + 1 NA Intergenic Mam_R4|LINE|Dong-R4 217378 NM_004361 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 409.75 chr2 72170364 72171051 + 1 NA Intergenic AluJb|SINE|Alu -22845 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 156.25-69 chr5 52105738 52105943 + 1 NA Intergenic Intergenic 97809 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 371.75-2 chr2 213084314 213084799 + 1 NA intron (NM_001371277, intron 3 of 6) intron (NM_001371277, intron 3 of 6) 65881 NM_016260 22807 Hs.604950 NM_016260 ENSG00000030419 IKZF2 ANF1A2|HELIOS|ZNF1A2|ZNFN1A2 IKAROS family zinc finger 2 protein-coding 213.25-27 chr22 45839271 45839534 + 1 NA intron (NM_013236, intron 10 of 11) intron (NM_013236, intron 10 of 11) 78878 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 294.25-8 chr3 1348483 1349060 + 1 NA intron (NM_001289080, intron 11 of 22) MIR|SINE|MIR 255747 NM_001349350 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 196.75-42 chr5 117227606 117228122 + 1 NA Intergenic Intergenic -187648 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 157.25-42 chr18 60736371 60736582 + 1 NA Intergenic L1MC|LINE|L1 -363701 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 284.75-15 chr5 108521835 108522387 + 1 NA Intergenic Intergenic -140013 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 263.75-13 chr3 78165346 78165797 + 1 NA Intergenic Charlie2a|DNA|hAT-Charlie -116608 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 149.75-20 chr12 43768041 43768415 + 1 NA exon (NM_016123, exon 2 of 12) exon (NM_016123, exon 2 of 12) 9284 NM_016123 51135 Hs.138499 NM_016123 ENSG00000198001 IRAK4 IPD1|IRAK-4|NY-REN-64|REN64 interleukin 1 receptor associated kinase 4 protein-coding 176.5-38 chr2 76934424 76934799 + 1 NA intron (NR_146416, intron 1 of 1) MER63A|DNA|hAT-Blackjack -51354 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 308.75 chr1 29209454 29209947 + 1 NA intron (NM_001349715, intron 4 of 10) MIRb|SINE|MIR 21234 NR_146213 51102 Hs.183646 NM_016011 ENSG00000116353 MECR CGI-63|DYTOABG|ETR1|FASN2B|NRBF1 mitochondrial trans-2-enoyl-CoA reductase protein-coding 329.75-4 chr20 38963832 38964253 + 1 NA intron (NM_021931, intron 1 of 21) MIRb|SINE|MIR 1698 NM_021931 60625 Hs.444520 NM_021931 ENSG00000101452 DHX35 C20orf15|DDX35|KAIA0875 DEAH-box helicase 35 protein-coding 157.5-8 chr10 63257390 63257563 + 1 NA intron (NM_001322252, intron 2 of 24) intron (NM_001322252, intron 2 of 24) 11747 NR_134512 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 181.5-71 chr8 136640459 136640812 + 1 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 109837 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 182.75-43 chr3 165296926 165297196 + 1 NA intron (NR_125764, intron 1 of 5) intron (NR_125764, intron 1 of 5) 90101 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 225.25-16 chr2 8257687 8257949 + 1 NA intron (NR_152741, intron 8 of 9) intron (NR_152741, intron 8 of 9) 70601 NR_034135 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 364.25-2 chr17 13044746 13045599 + 1 NA Intergenic Intergenic -27108 NM_001165962 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 296.5 chr1 51275901 51276332 + 1 NA Intergenic Intergenic 21845 NM_001297666 22996 Hs.112949 NM_001080494 ENSG00000085831 TTC39A C1orf34|DEME-6 tetratricopeptide repeat domain 39A protein-coding 278.5-13 chr4 56400650 56401182 + 1 NA intron (NR_156493, intron 7 of 10) intron (NR_156493, intron 7 of 10) -13408 NM_001286669 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 152.5-21 chr13 29124022 29124241 + 1 NA intron (NM_001033602, intron 3 of 13) MamRTE1|LINE|RTE-BovB 99674 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 293.5 chr13 63961448 63961997 + 1 NA Intergenic MamGypsy2-I|LTR|Gypsy 114289 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 252.5-25 chr6 143350890 143351194 + 1 NA Intergenic L1MA5|LINE|L1 91635 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 233.5-10 chr2 67413492 67413946 + 1 NA Intergenic Intergenic 16386 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 271.75-18 chr6 123098564 123099061 + 1 NA Intergenic L2a|LINE|L2 102577 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 150.25-82 chr5 90214336 90214540 + 1 NA intron (NR_120601, intron 3 of 5) L1MB3|LINE|L1 75633 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 310.75-8 chr7 79621095 79621528 + 1 NA Intergenic Intergenic 167351 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 221.25-7 chr10 73089579 73089860 + 1 NA intron (NM_001142595, intron 1 of 15) L1ME2|LINE|L1 7255 NM_001142595 5033 Hs.500047 NM_000917 ENSG00000122884 P4HA1 P4HA prolyl 4-hydroxylase subunit alpha 1 protein-coding 266.25-11 chr4 114552722 114553043 + 1 NA Intergenic MER4-int|LTR|ERV1 -45520 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 301.5-17 chr8 102979409 102979904 + 1 NA Intergenic MER57D|LTR|ERV1 -41427 NM_001695 528 Hs.86905 NM_001695 ENSG00000155097 ATP6V1C1 ATP6C|ATP6D|VATC|Vma5 ATPase H+ transporting V1 subunit C1 protein-coding 305.75-5 chr2 12434251 12434754 + 1 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 235372 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 198.5-42 chr5 56429168 56429488 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR 52441 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 179.75-14 chr12 125842659 125843028 + 1 NA Intergenic Intergenic 140531 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 226.75-24 chr7 7881537 7881948 + 1 NA Intergenic L1MC3|LINE|L1 87010 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 310.75-3 chr2 115662039 115662456 + 1 NA intron (NM_001321912, intron 6 of 25) L1MA9|LINE|L1 318432 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 182.5-57 chr5 113966355 113966699 + 1 NA Intergenic AluSc|SINE|Alu -395543 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 209.75-7 chr11 42270663 42271052 + 1 NA Intergenic MER44A|DNA|TcMar-Tigger -17167 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 230.25-18 chr18 73618256 73618600 + 1 NA Intergenic Intergenic 293487 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 213.75-32 chr5 153178554 153178809 + 1 NA Intergenic Intergenic -206332 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 183.5-63 chr5 130854052 130854282 + 1 NA Intergenic Intergenic 311089 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 358.75-2 chr4 64373675 64374641 + 1 NA intron (NM_001363796, intron 2 of 11) intron (NM_001363796, intron 2 of 11) 35292 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 154.5-9 chr1 162977118 162977385 + 1 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -91355 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 197.75-12 chr11 10763474 10763709 + 1 NA intron (NM_014633, intron 8 of 24) intron (NM_014633, intron 8 of 24) 12345 NM_014633 9646 Hs.725151 NM_014633 ENSG00000198730 CTR9 SH2BP1|TSBP|p150|p150TSP CTR9 homolog, Paf1/RNA polymerase II complex component protein-coding 194.5-17 chr13 58155076 58155397 + 1 NA Intergenic Intergenic -10591 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 176.75-14 chr11 96832490 96832736 + 1 NA Intergenic L1M5|LINE|L1 324188 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 358.25 chr11 78415496 78416040 + 1 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) 2052 NM_080491 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 207.5-37 chr6 38688558 38688812 + 1 NA intron (NM_006708, intron 1 of 5) MER76|LTR|ERVL 14460 NM_006708 2739 Hs.268849 NM_006708 ENSG00000124767 GLO1 GLOD1|GLYI|HEL-S-74 glyoxalase I protein-coding 209.25 chr1 101858331 101858669 + 1 NA intron (NM_058170, intron 1 of 5) L2c|LINE|L2 -11420 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 192.75-45 chr4 72725051 72725557 + 1 NA Intergenic Intergenic -156083 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 200.25-30 chr2 58709385 58709750 + 1 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 188814 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 266.75-22 chr9 29363067 29363482 + 1 NA Intergenic Intergenic -149673 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 215.25-10 chr11 103360412 103360759 + 1 NA intron (NM_001377, intron 83 of 88) intron (NM_001377, intron 83 of 88) 251159 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 263.5-5 chr11 101451177 101451608 + 1 NA TTS (NM_004621) TTS (NM_004621) 68513 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 231.25-14 chr14 54796658 54796935 + 1 NA Intergenic AluJb|SINE|Alu 41963 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 180.75-55 chr6 50445164 50445418 + 1 NA Intergenic Intergenic -268253 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 193.75-39 chr2 222005408 222005957 + 1 NA Intergenic Intergenic -292465 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 151.75-17 chr11 78861114 78861277 + 1 NA intron (NM_001098816, intron 10 of 33) intron (NM_001098816, intron 10 of 33) -286331 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 269.5-18 chr6 146034825 146035241 + 1 NA intron (NM_001278065, intron 2 of 9) intron (NM_001278065, intron 2 of 9) 5835 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 180.5-62 chr6 66682706 66682925 + 1 NA Intergenic Intergenic 894936 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 219.5-11 chr18 4998123 4998483 + 1 NA Intergenic Intergenic -82879 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 222.5-20 chr16 21244668 21245090 + 1 NA intron (NM_145865, intron 1 of 1) (ATTTG)n|Simple_repeat|Simple_repeat 11180 NM_145865 257629 Hs.115959 NM_145865 ENSG00000175311 ANKS4B HARP ankyrin repeat and sterile alpha motif domain containing 4B protein-coding 250.75-26 chr6 35103994 35104345 + 1 NA Intergenic L1MDa|LINE|L1 37170 NM_001366325 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 347.5-8 chr3 139858000 139858520 + 1 NA Intergenic Intergenic -76925 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 191.5-39 chr4 61786294 61786600 + 1 NA intron (NM_001371343, intron 8 of 23) intron (NM_001371343, intron 8 of 23) 375318 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 145.75-99 chr6 56410982 56411162 + 1 NA Intergenic L2|LINE|L2 -16944 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 274.25-9 chr22 28208383 28208869 + 1 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -251243 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 194.5-62 chr9 37829968 37830273 + 1 NA intron (NM_001286810, intron 2 of 6) L1ME3Cz|LINE|L1 29323 NM_024345 79269 Hs.118394 NM_024345 ENSG00000122741 DCAF10 WDR32 DDB1 and CUL4 associated factor 10 protein-coding 340.75 chr15 76951841 76952229 + 1 NA 3' UTR (NM_002902, exon 7 of 7) 3' UTR (NM_002902, exon 7 of 7) 20286 NM_001271837 5955 Hs.79088 NM_002902 ENSG00000117906 RCN2 E6BP|ERC-55|ERC55|TCBP49 reticulocalbin 2 protein-coding 300.5 chr1 191393466 191393981 + 1 NA Intergenic L1MA10|LINE|L1 -165225 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 161.75-20 chr16 75163972 75164420 + 1 NA intron (NM_001318471, intron 3 of 4) L1MEd|LINE|L1 15145 NM_001318475 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 294.25-11 chr3 82870169 82870621 + 1 NA Intergenic Intergenic 884253 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 174.25-24 chr17 64197907 64198292 + 1 NA intron (NM_018469, intron 2 of 11) L1M5|LINE|L1 32635 NM_001288733 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 350.5-4 chr3 56243936 56244438 + 1 NA intron (NR_132749, intron 3 of 17) Tigger3b|DNA|TcMar-Tigger 224280 NM_015576 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 158.5-27 chr15 37346368 37346570 + 1 NA Intergenic Intergenic -245158 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 312.75-2 chr2 201021370 201021717 + 1 NA intron (NM_001321619, intron 4 of 11) intron (NM_001321619, intron 4 of 11) 50128 NM_001321628 285172 Hs.24701 NM_173822 ENSG00000155744 FAM126B HYCC2 family with sequence similarity 126 member B protein-coding 239.5-18 chr18 4189798 4190069 + 1 NA intron (NM_001242761, intron 1 of 11) L1MC2|LINE|L1 -74669 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 368.75 chr19 29345883 29346431 + 1 NA intron (NR_040029, intron 9 of 9) L1MB3|LINE|L1 -133006 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 258.75-18 chr5 25697327 25697642 + 1 NA Intergenic Intergenic 506531 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 265.75-16 chr6 50471512 50471960 + 1 NA Intergenic Intergenic -241808 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 248.5-7 chr17 75205453 75205944 + 1 NA promoter-TSS (NM_024844) promoter-TSS (NM_024844) 19 NM_024844 79902 Hs.362817 NM_024844 ENSG00000125450 NUP85 FROUNT|NPHS17|Nup75 nucleoporin 85 protein-coding 184.5-65 chr6 64429851 64430331 + 1 NA intron (NM_001292009, intron 28 of 43) intron (NM_001292009, intron 28 of 43) 623255 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 229.75-7 chr12 7436242 7436488 + 1 NA intron (NM_001297650, intron 2 of 19) intron (NM_001297650, intron 2 of 19) 7820 NM_001297650 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 276.5-3 chr11 34646454 34646777 + 1 NA exon (NM_001206616, exon 3 of 9) exon (NM_001206616, exon 3 of 9) 14049 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 231.5-30 chr6 134041026 134041416 + 1 NA intron (NM_145176, intron 1 of 4) intron (NM_145176, intron 1 of 4) 11403 NM_145176 154091 Hs.486508 NM_145176 ENSG00000146411 SLC2A12 GLUT12|GLUT8 solute carrier family 2 member 12 protein-coding 252.5-27 chr8 61283381 61283666 + 1 NA Intergenic MLT1I|LTR|ERVL-MaLR -4447 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 217.25-16 chr14 53892464 53892808 + 1 NA Intergenic L2b|LINE|L2 55848 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 168.5-89 chr6 110484805 110485102 + 1 NA Intergenic L2a|LINE|L2 -8340 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 211.75-7 chr12 129784085 129784365 + 1 NA intron (NM_133448, intron 1 of 8) intron (NM_133448, intron 1 of 8) 119800 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 282.5-10 chr20 2239204 2239574 + 1 NA Intergenic MIR3|SINE|MIR 32461 NR_161305 388780 Hs.132163 NR_161305 LOC388780 - uncharacterized LOC388780 ncRNA 201.5-38 chr3 64351345 64351595 + 1 NA Intergenic MIR|SINE|MIR -83297 NM_001370528 166336 Hs.148105 NM_198859 ENSG00000163637 PRICKLE2 EPM5 prickle planar cell polarity protein 2 protein-coding 243.5-7 chr14 20101106 20101488 + 1 NA Intergenic L1MC4|LINE|L1 -16171 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 330.25-2 chr12 41663971 41664670 + 1 NA Intergenic MIRc|SINE|MIR -99869 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 215.5-6 chr10 23776059 23776306 + 1 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 81455 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 386.25-2 chr14 62830776 62831330 + 1 NA intron (NM_139318, intron 8 of 10) L1MC4|LINE|L1 214405 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 146.75-87 chr5 35055312 35055472 + 1 NA TTS (NM_000949) TTS (NM_000949) -7443 NM_001306173 64902 Hs.34494 NM_031900 ENSG00000113492 AGXT2 AGT2|BAIBA|DAIBAT alanine--glyoxylate aminotransferase 2 protein-coding 276.75-6 chr2 112743655 112744255 + 1 NA intron (NR_130712, intron 7 of 9) intron (NR_130712, intron 7 of 9) 20654 NR_130712 150468 Hs.434250 NM_152515 ENSG00000169607 CKAP2L - cytoskeleton associated protein 2 like protein-coding 250.25-3 chr10 82873832 82874151 + 1 NA intron (NR_163253, intron 6 of 10) intron (NR_163253, intron 6 of 10) -641071 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 221.5-19 chr14 68244573 68244841 + 1 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 384080 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 249.75-4 chr12 9160326 9160670 + 1 NA intron (NM_002864, intron 23 of 35) intron (NM_002864, intron 23 of 35) -44269 NM_001347425 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 337.5-8 chr8 12949894 12950586 + 1 NA intron (NM_020844, intron 1 of 4) intron (NM_020844, intron 1 of 4) 4567 NM_020844 57604 Hs.202521 NM_020844 ENSG00000250305 TRMT9B C8orf79|KIAA1456|TRM9L|hTRM9L tRNA methyltransferase 9B (putative) protein-coding 285.25-8 chr5 152253608 152253970 + 1 NA intron (NR_109876, intron 1 of 2) L1MA9|LINE|L1 151490 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 304.75-4 chr4 14081411 14081919 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -30303 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 278.25-13 chr5 56968444 56968803 + 1 NA Intergenic L1M5|LINE|L1 -16493 NM_001297599 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 160.25-40 chr20 15456232 15456559 + 1 NA intron (NM_001351663, intron 7 of 17) intron (NM_001351663, intron 7 of 17) 259555 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 373.75-4 chr6 53684844 53685432 + 1 NA Intergenic Intergenic -19382 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 181.25-39 chr3 99024264 99024540 + 1 NA Intergenic L3|LINE|CR1 -122707 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 220.5-34 chr7 13906568 13906908 + 1 NA intron (NM_001370555, intron 10 of 12) intron (NM_001370555, intron 10 of 12) 79776 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 194.5-45 chr4 152259719 152259945 + 1 NA Intergenic L2c|LINE|L2 -77823 NR_104273 102191832 Hs.712524 NR_104273 ENSG00000270751 FBXW7-AS1 DEAR|DEspR FBXW7 antisense RNA 1 ncRNA 177.5-24 chr16 50990596 50990841 + 1 NA intron (NR_039672, intron 2 of 6) intron (NR_039672, intron 2 of 6) -27040 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 354.75-8 chr4 117511730 117512290 + 1 NA intron (NR_125757, intron 2 of 3) intron (NR_125757, intron 2 of 3) 83612 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 331.25-7 chr6 45153206 45153552 + 1 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) 44391 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 273.75-4 chr16 49801756 49802235 + 1 NA intron (NM_001271620, intron 1 of 7) AluJr|SINE|Alu 20743 NM_015069 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 239.25-17 chr20 55911270 55911645 + 1 NA Intergenic Intergenic 94062 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 397.25-3 chr8 132634351 132635073 + 1 NA intron (NR_073525, intron 4 of 12) (ATAA)n|Simple_repeat|Simple_repeat 40833 NM_001321965 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 304.25-11 chr6 50765566 50766080 + 1 NA intron (NM_172238, intron 7 of 7) L1MA9|LINE|L1 52279 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 178.25-80 chrX 81855444 81855710 + 1 NA Intergenic L1M3b|LINE|L1 653475 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 290.5-16 chr8 82524643 82525124 + 1 NA Intergenic Intergenic -387221 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 400.25-6 chr8 108869562 108870260 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -82317 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 211.5-22 chr2 6751101 6751434 + 1 NA intron (NR_038369, intron 1 of 5) intron (NR_038369, intron 1 of 5) 19044 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 181.25-52 chr5 173188403 173188694 + 1 NA Intergenic Charlie17|DNA|hAT-Charlie 44017 NM_013980 662 Hs.145726 NM_001205 ENSG00000113734 BNIP1 NIP1|SEC20|TRG-8 BCL2 interacting protein 1 protein-coding 176.5-4 chr1 157394863 157395233 + 1 NA Intergenic Intergenic 157467 NM_001195388 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 236.5-14 chr2 42770992 42771406 + 1 NA intron (NM_012205, intron 4 of 9) AluSx1|SINE|Alu -6938 NM_148962 165140 Hs.168439 NM_148962 ENSG00000162881 OXER1 GPCR|GPR170|TG1019 oxoeicosanoid receptor 1 protein-coding 299.75-5 chr3 169728595 169729348 + 1 NA Intergenic L1MA3|LINE|L1 36089 NR_001566 7012 Hs.436182 NR_001566 ENSG00000277925 TERC DKCA1|PFBMFT2|SCARNA19|TR|TRC3|hTR telomerase RNA component ncRNA 175.75-7 chr10 57601196 57601406 + 1 NA Intergenic Intergenic -296742 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 154.5-19 chr11 86902011 86902192 + 1 NA intron (NR_120592, intron 2 of 2) intron (NR_120592, intron 2 of 2) -44147 NR_045004 8587 Hs.741959 NR_045004 ENSG00000255203 OR7E2P OR11-6|OR7E143P|OR7E51P|OR7E52P|OR7F2P|OST245|hg94 olfactory receptor family 7 subfamily E member 2 pseudogene pseudo 350.25-7 chr9 105530367 105531017 + 1 NA intron (NM_001287191, intron 10 of 13) intron (NM_001287191, intron 10 of 13) 10868 NR_104269 26134 Hs.113150 NR_104269 ENSG00000229419 RALGAPA1P1 GARNL2|GARNL2P|RALGAPA1P|bA235C23.1 Ral GTPase activating protein catalytic alpha subunit 1 pseudogene 1 pseudo 150.25-54 chr2 185236325 185236699 + 1 NA Intergenic L1MA9|LINE|L1 -69440 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 348.5-3 chr2 8029547 8029951 + 1 NA intron (NR_034135, intron 8 of 8) intron (NR_034135, intron 8 of 8) -52935 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 268.75-6 chr17 65881874 65882349 + 1 NA intron (NM_001353129, intron 20 of 26) intron (NM_001353129, intron 20 of 26) -55568 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 283.75-11 chr8 123586141 123586543 + 1 NA Intergenic MER5B|DNA|hAT-Charlie -45136 NM_058229 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 148.75-72 chr4 95123736 95124069 + 1 NA exon (NM_001203, exon 7 of 13) exon (NM_001203, exon 7 of 13) 32411 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 375.5-7 chr7 7997642 7998400 + 1 NA intron (NM_138426, intron 1 of 7) intron (NM_138426, intron 1 of 7) 29225 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 155.5-77 chr4 184368311 184368540 + 1 NA non-coding (NR_125933, exon 5 of 7) non-coding (NR_125933, exon 5 of 7) 13881 NR_125934 102723766 Hs.432281 NR_125933 ENSG00000249096 LINC02362 - long intergenic non-protein coding RNA 2362 ncRNA 308.75-3 chr11 81375711 81376330 + 1 NA Intergenic L1MA10|LINE|L1 514816 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 382.75-2 chr4 122679453 122680094 + 1 NA intron (NR_104126, intron 10 of 10) Tigger13a|DNA|TcMar-Tigger 52685 NR_024041 729338 Hs.647968 NR_024041 CETN4P - centrin 4, pseudogene pseudo 187.5-38 chr2 129168064 129168323 + 1 NA Intergenic L1MEc|LINE|L1 105698 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 207.5-4 chr1 187988102 187988443 + 1 NA Intergenic Intergenic 544644 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 388.5-5 chr7 84010346 84010996 + 1 NA intron (NM_006080, intron 9 of 16) intron (NM_006080, intron 9 of 16) 184118 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 265.5-10 chr18 42757715 42758330 + 1 NA intron (NM_002930, intron 4 of 4) intron (NM_002930, intron 4 of 4) 357663 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 380.25 chr11 83322551 83323299 + 1 NA Intergenic L1MA4A|LINE|L1 -36518 NM_001286120 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 264.5-13 chr19 8700882 8701163 + 1 NA Intergenic MIRb|SINE|MIR -2227 NM_178525 284382 Hs.209206 NM_178525 ENSG00000181786 ACTL9 HSD21 actin like 9 protein-coding 165.75-15 chr10 16088317 16088627 + 1 NA Intergenic Tigger2a|DNA|TcMar-Tigger -227939 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 207.75-25 chr21 17796028 17796483 + 1 NA intron (NM_001100420, intron 3 of 4) intron (NM_001100420, intron 3 of 4) -3746 NR_038870 246312 Hs.473425 NR_038870 ENSG00000240770 C21orf91-OT1 D21S2089E|NCRNA00285 C21orf91 overlapping transcript 1 ncRNA 234.25-11 chr21 24326077 24326352 + 1 NA Intergenic Intergenic -4837 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 220.5-23 chr20 21037690 21037984 + 1 NA Intergenic Intergenic 68521 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 277.25-11 chr7 29165278 29165799 + 1 NA intron (NM_001293069, intron 2 of 13) L1ME1|LINE|L1 18991 NM_001293069 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 240.5-18 chr3 117041996 117042320 + 1 NA Intergenic Charlie2b|DNA|hAT-Charlie 120727 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 252.25-13 chr6 6725992 6726468 + 1 NA Intergenic L1MEg|LINE|L1 -103404 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 227.25-4 chr10 75139940 75140431 + 1 NA intron (NM_144660, intron 1 of 4) intron (NM_144660, intron 1 of 4) 28529 NM_144660 142891 Hs.744986 NM_144660 ENSG00000156671 SAMD8 HEL-177|SMSr sterile alpha motif domain containing 8 protein-coding 290.5-15 chr7 7739228 7739652 + 1 NA intron (NM_001302350, intron 3 of 4) intron (NM_001302350, intron 3 of 4) -20833 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 184.75-61 chr4 141467751 141468204 + 1 NA Intergenic L1MC5|LINE|L1 -135360 NR_121625 100507639 Hs.535010 NR_121625 LINC02432 - long intergenic non-protein coding RNA 2432 ncRNA 275.5-7 chr14 73955737 73956205 + 1 NA intron (NM_182476, intron 4 of 11) intron (NM_182476, intron 4 of 11) 5669 NM_182476 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 314.75-8 chr8 119276241 119276842 + 1 NA Intergenic AluJo|SINE|Alu -29684 NR_149112 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 310.5-2 chr14 79206341 79206784 + 1 NA intron (NR_073547, intron 14 of 20) MIR|SINE|MIR 6580 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 274.25-12 chr6 11137671 11138216 + 1 NA 3' UTR (NM_001135575, exon 2 of 2) 3' UTR (NM_001135575, exon 2 of 2) -26218 NM_207582 405754 Hs.631996 NM_207582 ENSG00000244476 ERVFRD-1 ERVFRDE1|GLLL6191|HERV-FRD|HERV-W/FRD|UNQ6191|envFRD endogenous retrovirus group FRD member 1, envelope protein-coding 149.25-116 chr9 8309408 8309804 + 1 NA Intergenic Intergenic 424340 NM_130392 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 186.5-55 chr5 13158447 13158647 + 1 NA Intergenic AluY|SINE|Alu -125661 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 191.25-40 chr2 146048152 146048396 + 1 NA Intergenic Intergenic -538783 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 237.5-25 chr4 168424012 168424322 + 1 NA intron (NM_001345927, intron 14 of 37) intron (NM_001345927, intron 14 of 37) 56325 NM_001291510 91351 Hs.535011 NM_001012967 ENSG00000181381 DDX60L - DExD/H-box 60 like protein-coding 174.75-51 chr5 9737296 9737610 + 1 NA intron (NR_027112, intron 5 of 12) MIR|SINE|MIR -107102 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 242.5-34 chr5 86554456 86554970 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -63228 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 250.75-8 chr14 63819851 63820333 + 1 NA Intergenic L1ME1|LINE|L1 -32873 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 286.75-10 chr5 125830652 125831189 + 1 NA Intergenic Charlie25|DNA|hAT-Charlie 337659 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 203.5-42 chr3 87253171 87253535 + 1 NA intron (NM_014043, intron 4 of 5) intron (NM_014043, intron 4 of 5) 23231 NM_001122757 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 203.25-16 chr17 63129797 63130196 + 1 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 163761 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 162.5-20 chr12 23994848 23995226 + 1 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -44005 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 410.75-2 chr4 101819088 101820022 + 1 NA intron (NM_001083907, intron 1 of 16) ERVL-E-int|LTR|ERVL 5713 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 329.5-7 chr8 88938033 88938581 + 1 NA Intergenic Intergenic -610824 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 378.25 chr2 76553992 76554836 + 1 NA Intergenic Intergenic -431551 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 253.5-6 chr12 11595412 11595955 + 1 NA Intergenic AluSx1|SINE|Alu 47653 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 157.75-49 chr2 23234556 23234956 + 1 NA Intergenic Charlie1a|DNA|hAT-Charlie -150423 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 175.75-45 chr3 87272980 87273283 + 1 NA intron (NM_001122757, intron 2 of 5) Tigger15a|DNA|TcMar-Tigger 3453 NM_001122757 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 250.25-13 chr2 36080926 36081373 + 1 NA Intergenic Intergenic 274421 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 226.5-27 chr8 83306857 83307208 + 1 NA Intergenic L1ME4b|LINE|L1 -96726 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 188.25-43 chr5 22407098 22407489 + 1 NA intron (NM_004061, intron 2 of 14) L2|LINE|L2 -193443 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 193.5-36 chr2 54518578 54518875 + 1 NA intron (NM_003128, intron 1 of 35) intron (NM_003128, intron 1 of 35) -10496 NR_002229 56969 Hs.657366 NM_020217 RPL23AP32 RPL23A_9_220 ribosomal protein L23a pseudogene 32 pseudo 208.5-20 chr14 59781011 59781404 + 1 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 89569 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 187.25-11 chr11 11796417 11796749 + 1 NA Intergenic Intergenic -13361 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 294.5-8 chr8 29991837 29992141 + 1 NA Intergenic Intergenic -34641 NR_036104 100422876 NR_036104 ENSG00000264788 MIR3148 mir-3148 microRNA 3148 ncRNA 246.5-22 chr6 23015236 23015523 + 1 NA Intergenic Intergenic -297455 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 183.5-58 chr4 173850325 173850551 + 1 NA Intergenic MER44B|DNA|TcMar-Tigger -46835 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 164.25-27 chr14 45203760 45204135 + 1 NA 3' UTR (NM_018353, exon 17 of 17) 3' UTR (NM_018353, exon 17 of 17) 49255 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 220.5-14 chr16 35436068 35436306 + 1 NA Intergenic Intergenic 44409 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 148.5-77 chr5 27560859 27561136 + 1 NA Intergenic Intergenic 88705 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 157.5-51 chr2 174061012 174061205 + 1 NA Intergenic Intergenic 35828 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 199.25-65 chr8 49275793 49276164 + 1 NA Intergenic Intergenic 203634 NM_001256598 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 202.5-35 chr2 221536770 221537043 + 1 NA intron (NM_001363748, intron 3 of 17) MIR|SINE|MIR 35398 NM_004438 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 214.5-25 chr2 224933563 224933907 + 1 NA intron (NM_014689, intron 1 of 55) intron (NM_014689, intron 1 of 55) 13314 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 375.5-8 chr9 70973480 70974081 + 1 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -104728 NM_001007470 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 251.5-9 chr13 91610236 91610792 + 1 NA intron (NM_004466, intron 2 of 7) intron (NM_004466, intron 2 of 7) 211893 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 321.25 chr1 22769165 22769717 + 1 NA intron (NM_004442, intron 1 of 15) AluSz6|SINE|Alu 49924 NR_039832 100616391 NR_039832 ENSG00000265422 MIR4684 - microRNA 4684 ncRNA 204.5-5 chr1 215113106 215113456 + 1 NA intron (NM_001017424, intron 2 of 6) intron (NM_001017424, intron 2 of 6) 30544 NM_014217 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 271.25-18 chr7 50223479 50223933 + 1 NA Intergenic L1MB5|LINE|L1 -80358 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 228.5-9 chr10 58731216 58731470 + 1 NA intron (NM_001080512, intron 3 of 20) MSTA-int|LTR|ERVL-MaLR 16328 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 153.5-8 chr1 216271337 216271644 + 1 NA intron (NM_206933, intron 11 of 71) L1M5|LINE|L1 151906 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 195.5-5 chr1 241290159 241290425 + 1 NA intron (NM_001282778, intron 2 of 16) intron (NM_001282778, intron 2 of 16) 65534 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 163.75-59 chr5 42891474 42891826 + 1 NA Intergenic AluSx|SINE|Alu -79574 NM_001085486 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 237.25-3 chr11 97486950 97487458 + 1 NA Intergenic Intergenic 978779 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 184.5-67 chr7 6196033 6196320 + 1 NA intron (NM_001367581, intron 1 of 13) intron (NM_001367581, intron 1 of 13) -24039 NM_001367582 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 239.5-31 chr5 107830552 107830962 + 1 NA Intergenic Intergenic -159820 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 283.75-5 chr2 222442754 222443440 + 1 NA intron (NM_152386, intron 1 of 4) intron (NM_152386, intron 1 of 4) 18554 NM_001320833 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 222.25-17 chr16 64861983 64862306 + 1 NA Intergenic Intergenic 259919 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 152.5-76 chr3 180020366 180020641 + 1 NA intron (NM_016559, intron 1 of 14) MIR3|SINE|MIR 16434 NM_001349389 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 154.5-41 chr19 6652114 6652285 + 1 NA Intergenic AluSx|SINE|Alu 17959 NM_172014 8740 Hs.129708 NM_003807 ENSG00000125735 TNFSF14 CD258|HVEML|LIGHT|LTg TNF superfamily member 14 protein-coding 181.25-53 chr7 41920216 41920601 + 1 NA Intergenic L1MEi|LINE|L1 -217318 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 247.25 chr1 80056803 80057108 + 1 NA Intergenic Intergenic -478800 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 191.25-45 chr22 28147926 28148172 + 1 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -227437 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 216.25-7 chr11 73916325 73916738 + 1 NA intron (NM_001267803, intron 9 of 12) intron (NM_001267803, intron 9 of 12) 27750 NM_001363556 80227 Hs.525017 NM_025155 ENSG00000175575 PAAF1 PAAF|Rpn14|WDR71 proteasomal ATPase associated factor 1 protein-coding 168.5-105 chr9 104890654 104890892 + 1 NA intron (NM_005502, intron 2 of 49) intron (NM_005502, intron 2 of 49) 37382 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 343.75-10 chr8 61160644 61161145 + 1 NA Intergenic MER31B|LTR|ERV1 -127076 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 204.25-19 chr18 67048875 67049184 + 1 NA Intergenic L1MD2|LINE|L1 -32555 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 210.5-47 chr8 75543778 75544064 + 1 NA exon (NM_004133, exon 2 of 10) exon (NM_004133, exon 2 of 10) 3953 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 221.25-8 chr10 81828862 81829306 + 1 NA Intergenic Intergenic -46110 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 192.5-33 chr3 31049247 31049570 + 1 NA Intergenic Intergenic 112379 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 207.25-5 chr1 220508757 220509215 + 1 NA Intergenic Intergenic -19150 NM_001286128 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 208.5-42 chr3 134456276 134456576 + 1 NA Intergenic Intergenic 18599 NR_039951 100616281 NR_039951 ENSG00000284561 MIR4788 - microRNA 4788 ncRNA 237.25-5 chr16 13386185 13386623 + 1 NA Intergenic Intergenic 484806 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 172.75-55 chr5 88799591 88799800 + 1 NA intron (NM_001364333, intron 3 of 9) intron (NM_001364333, intron 3 of 9) -14184 NM_001364356 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 308.5-4 chr7 39421873 39422375 + 1 NA intron (NM_001370959, intron 6 of 9) intron (NM_001370959, intron 6 of 9) -15778 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 227.25-8 chr11 111627106 111627562 + 1 NA intron (NM_015191, intron 3 of 14) MER44A|DNA|TcMar-Tigger 24885 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 413.25-4 chr5 12290823 12291435 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -283728 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 212.25-52 chr8 135537583 135537946 + 1 NA intron (NM_006558, intron 2 of 8) intron (NM_006558, intron 2 of 8) 80308 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 178.5-32 chr17 28025411 28025712 + 1 NA Intergenic Intergenic -17116 NM_016231 51701 Hs.208759 NM_016231 ENSG00000087095 NLK - nemo like kinase protein-coding 173.5-52 chr3 86867494 86867750 + 1 NA Intergenic Intergenic 123527 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 273.75-3 chr15 96645701 96646158 + 1 NA Intergenic Intergenic 135725 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 275.25-7 chr6 65407991 65408420 + 1 NA intron (NM_198283, intron 4 of 9) L1ME1|LINE|L1 106787 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 186.5-46 chr3 181572903 181573204 + 1 NA intron (NR_075091, intron 4 of 7) intron (NR_075091, intron 4 of 7) -37281 NR_075089 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 148.75-42 chr2 12980941 12981215 + 1 NA non-coding (NR_038434, exon 5 of 6) non-coding (NR_038434, exon 5 of 6) 25935 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 286.5-12 chr5 118959350 118959929 + 1 NA intron (NM_173666, intron 1 of 5) L1PA15|LINE|L1 -14947 NR_036052 100302285 NR_036052 ENSG00000284378 MIR1244-1 MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1 microRNA 1244-1 ncRNA 267.5-29 chrX 152144566 152144903 + 1 NA Intergenic L1MC3|LINE|L1 -6156 NM_001011543 4109 Hs.18048 NM_021048 ENSG00000124260 MAGEA10 CT1.10|MAGE10 MAGE family member A10 protein-coding 211.5-9 chr10 57935677 57936003 + 1 NA Intergenic HAL1ME|LINE|L1 332054 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 168.5-41 chr18 2198029 2198281 + 1 NA Intergenic L2|LINE|L2 373350 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 249.5-9 chr13 96363635 96364113 + 1 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) -63355 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 365.25-6 chr6 68766402 68767196 + 1 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 131517 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 314.5-13 chr8 121111321 121111863 + 1 NA Intergenic Intergenic -299546 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 257.5-2 chr1 80769657 80770172 + 1 NA Intergenic Intergenic 128627 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 267.5-4 chr11 83937687 83938187 + 1 NA intron (NM_001142699, intron 14 of 27) L1ME4a|LINE|L1 -255512 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 267.5-2 chr10 49009255 49009687 + 1 NA Intergenic Intergenic -23884 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 244.25-13 chr2 208421523 208421790 + 1 NA intron (NM_005048, intron 1 of 12) intron (NM_005048, intron 1 of 12) 14826 NM_005048 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 234.5-12 chr2 27675308 27675634 + 1 NA intron (NM_018158, intron 5 of 13) intron (NM_018158, intron 5 of 13) -11631 NM_001282729 9913 Hs.6232 NM_014860 ENSG00000119760 SUPT7L SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H SPT7 like, STAGA complex gamma subunit protein-coding 250.25-25 chr8 88830999 88831488 + 1 NA Intergenic Intergenic -503760 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 336.25-2 chr14 68060484 68060943 + 1 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 237121 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 188.5-44 chr3 186610518 186611011 + 1 NA Intergenic AluSx3|SINE|Alu -2296 NM_001622 197 Hs.324746 NM_001622 ENSG00000145192 AHSG A2HS|AHS|APMR1|FETUA|HSGA alpha 2-HS glycoprotein protein-coding 284.75-11 chr3 147549684 147550216 + 1 NA Intergenic L1MEg|LINE|L1 128623 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 317.5 chr18 42396158 42396486 + 1 NA intron (NR_046174, intron 4 of 9) intron (NR_046174, intron 4 of 9) 209654 NR_046458 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 186.5-73 chr8 124462354 124462634 + 1 NA TTS (NR_108047) TTS (NR_108047) 11674 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 207.75-27 chr3 44615547 44615793 + 1 NA intron (NM_001351734, intron 2 of 6).2 L1MC5|LINE|L1 9127 NR_046658 100874094 NR_046658 ENSG00000233509 ZNF197-AS1 - ZNF197 antisense RNA 1 ncRNA 167.25-23 chr14 83843823 83844086 + 1 NA Intergenic 7SK|RNA|RNA 1201322 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 210.25-12 chr15 94010938 94011439 + 1 NA intron (NR_120320, intron 2 of 8) L1ME4a|LINE|L1 96750 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 181.25-44 chr4 34070881 34071203 + 1 NA Intergenic MIR|SINE|MIR -31149 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 278.5-18 chr8 64096866 64097406 + 1 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 271422 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 172.75-8 chr10 52073939 52074304 + 1 NA intron (NM_001098512, intron 7 of 17) intron (NM_001098512, intron 7 of 17) 240007 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 177.5-13 chr12 27694340 27694669 + 1 NA 3' UTR (NM_001198916, exon 28 of 28) 3' UTR (NM_001198916, exon 28 of 28) -1943 NM_001029874 387849 Hs.269836 NM_001029874 ENSG00000174236 REP15 RAB15EP RAB15 effector protein protein-coding 309.75 chr1 192125879 192126527 + 1 NA Intergenic Intergenic -32259 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 235.5-23 chr3 121338797 121339089 + 1 NA intron (NM_001348343, intron 21 of 27) L1MA3|LINE|L1 207045 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 258.5-22 chr6 92573756 92574107 + 1 NA Intergenic Intergenic 845628 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 174.5-86 chr8 111525368 111525685 + 1 NA Intergenic Intergenic 148887 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 340.25-4 chr6 64542194 64542739 + 1 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 735630 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 248.25-20 chr8 120739321 120739726 + 1 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -21730 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 174.25-61 chr7 13358462 13358726 + 1 NA Intergenic MER5A|DNA|hAT-Charlie 627920 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 230.5-36 chr8 127222552 127222975 + 1 NA Intergenic Intergenic -3495 NR_108049 100507056 Hs.343864 NR_108049 CCAT1 CARLO5|CARLo-5|onco-lncRNA-40 colon cancer associated transcript 1 ncRNA 241.75-23 chr7 119755433 119755844 + 1 NA intron (NR_131961, intron 3 of 3) intron (NR_131961, intron 3 of 3) 151737 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 238.5-27 chr4 87427654 87428049 + 1 NA intron (NM_024047, intron 1 of 7) intron (NM_024047, intron 1 of 7) 5254 NM_198038 53343 Hs.149500 NM_024047 ENSG00000170502 NUDT9 NUDT10 nudix hydrolase 9 protein-coding 187.75-26 chr16 54730606 54730865 + 1 NA Intergenic L1MB5|LINE|L1 117498 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 253.5-20 chr5 27613269 27613838 + 1 NA Intergenic L1PA8|LINE|L1 141261 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 225.5-27 chr20 50749474 50749914 + 1 NA exon (NM_032521, exon 3 of 3) exon (NM_032521, exon 3 of 3) 18114 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 161.75-92 chr8 123322521 123322829 + 1 NA intron (NM_014109, intron 27 of 27) AluJb|SINE|Alu -25359 NR_037516 100500863 NR_037516 ENSG00000207704 MIR548AA1 - microRNA 548aa-1 ncRNA 253.5-9 chr19 43817141 43817596 + 1 NA intron (NM_182573, intron 1 of 4) MLT1H|LTR|ERVL-MaLR 3288 NM_182573 284348 Hs.44289 NM_182573 ENSG00000159871 LYPD5 PRO4356 LY6/PLAUR domain containing 5 protein-coding 371.5-3 chr2 77258050 77258485 + 1 NA intron (NR_146416, intron 1 of 1) L1MD2|LINE|L1 264109 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 242.75-6 chr13 98016383 98016942 + 1 NA intron (NM_002271, intron 24 of 28) intron (NM_002271, intron 24 of 28) 62987 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 289.5 chr1 184841208 184841647 + 1 NA intron (NM_052966, intron 5 of 13) L3|LINE|CR1 -86569 NM_001319960 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 274.5-6 chr14 41851248 41851610 + 1 NA intron (NM_001330106, intron 2 of 4) intron (NM_001330106, intron 2 of 4) 244573 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 205.5-20 chr2 48679104 48679384 + 1 NA intron (NM_001198593, intron 10 of 10) intron (NM_001198593, intron 10 of 10) 61388 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 300.25-13 chr5 106388147 106388509 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 622686 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 197.75-34 chr2 67929713 67929954 + 1 NA Intergenic Intergenic -104271 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 204.5-45 chr8 130285218 130285725 + 1 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 11062 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 210.5-18 chr19 28199518 28199761 + 1 NA Intergenic Intergenic -405699 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 159.25-82 chr9 6787981 6788231 + 1 NA intron (NR_148680, intron 1 of 21) L2a|LINE|L2 30756 NR_148679 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 299.5 chr1 238553870 238554578 + 1 NA Intergenic Intergenic -68207 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 330.5-10 chr6 124282544 124283135 + 1 NA promoter-TSS (NM_001300740) promoter-TSS (NM_001300740) -166 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 179.5-34 chr18 60604413 60604730 + 1 NA Intergenic Charlie5|DNA|hAT-Charlie -231796 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 192.5-53 chr6 112623633 112623964 + 1 NA Intergenic L1M7|LINE|L1 276468 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 244.25-26 chr9 82561503 82561939 + 1 NA Intergenic MER115|DNA|hAT-Tip100 501421 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 242.5-35 chr5 115187048 115187448 + 1 NA Intergenic Intergenic -6702 NM_001017398 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 222.5-29 chr2 206684729 206685088 + 1 NA intron (NM_001093730, intron 9 of 11) intron (NM_001093730, intron 9 of 11) 33488 NM_001093730 391475 Hs.640667 NM_001093730 ENSG00000232125 DYTN - dystrotelin protein-coding 218.5-39 chr7 9591183 9591432 + 1 NA Intergenic L1PA15|LINE|L1 -42963 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 200.25-32 chr3 20803571 20803972 + 1 NA Intergenic L1PB4|LINE|L1 461303 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 291.25-2 chr1 233212064 233212721 + 1 NA intron (NM_014801, intron 12 of 33) intron (NM_014801, intron 12 of 33) 83333 NM_001328607 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 164.75-65 chr5 4454378 4454673 + 1 NA Intergenic Intergenic -318956 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 272.25-3 chr10 72096560 72097006 + 1 NA non-coding (NR_045564, exon 10 of 10) non-coding (NR_045564, exon 10 of 10) -7751 NM_001134434 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 protein-coding 146.75-11 chr10 30736925 30737095 + 1 NA Intergenic L1P3|LINE|L1 13791 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 227.5-6 chr11 78073965 78074326 + 1 NA intron (NM_001204054, intron 1 of 2) AluJo|SINE|Alu 5717 NM_001203261 100532726 Hs.407860 NM_001203260 ENSG00000259112 NDUFC2-KCTD14 - NDUFC2-KCTD14 readthrough protein-coding 249.5-26 chr7 69054375 69054678 + 1 NA Intergenic L1PA13|LINE|L1 543098 NR_148926 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 224.75-11 chr12 71144722 71145009 + 1 NA intron (NM_001369760, intron 1 of 7) intron (NM_001369760, intron 1 of 7) 12944 NM_001369760 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 363.25-3 chr2 219969995 219970658 + 1 NA Intergenic MER58B|DNA|hAT-Charlie -63761 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 252.75-21 chr3 135883254 135883617 + 1 NA Intergenic Intergenic -82293 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 195.5-68 chr8 97125760 97126096 + 1 NA intron (NM_016134, intron 7 of 7) L1ME1|LINE|L1 152000 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 205.75-44 chr4 34499166 34499588 + 1 NA Intergenic Intergenic -229630 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 153.5-62 chr3 23314967 23315120 + 1 NA intron (NM_001370225, intron 3 of 5) L1M1|LINE|L1 111716 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 403.5-4 chr6 66003996 66004679 + 1 NA Intergenic Intergenic 216458 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 183.5-27 chr2 14237202 14237596 + 1 NA intron (NR_103814, intron 2 of 3) intron (NR_103814, intron 2 of 3) 163559 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 205.5-45 chr8 28723325 28723632 + 1 NA intron (NM_001440, intron 3 of 6) intron (NM_001440, intron 3 of 6) 21977 NM_001440 2137 Hs.491354 NM_001440 ENSG00000012232 EXTL3 BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR exostosin like glycosyltransferase 3 protein-coding 358.5 chr14 41027632 41028176 + 1 NA intron (NR_109758, intron 3 of 3) intron (NR_109758, intron 3 of 3) 73193 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 236.25-8 chr11 28730365 28730700 + 1 NA Intergenic Intergenic -252984 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 361.25-3 chr18 22655945 22656557 + 1 NA Intergenic HAL1|LINE|L1 130586 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 306.5-8 chr6 64742532 64743088 + 1 NA intron (NM_001292009, intron 22 of 43) MamGypLTR1b|LTR|Gypsy -558608 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 205.75-24 chr15 26368791 26369242 + 1 NA Intergenic Intergenic 253203 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 361.5 chr13 26358996 26359832 + 1 NA intron (NM_001346501, intron 4 of 11) intron (NM_001346501, intron 4 of 11) 105285 NM_001346501 1024 Hs.382306 NM_001260 ENSG00000132964 CDK8 K35 cyclin dependent kinase 8 protein-coding 291.5-11 chr6 28059930 28060278 + 1 NA Intergenic Intergenic -13212 NM_001355425 442179 NM_001355425 OR1F12 OR1F12P|OR1F12Q|OR6-12|hs6M1-35P olfactory receptor family 1 subfamily F member 12 protein-coding 201.5-58 chr6 113647531 113647774 + 1 NA intron (NR_125844, intron 1 of 2) MLT1E1A|LTR|ERVL-MaLR 2423 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LINC02541 - long intergenic non-protein coding RNA 2541 ncRNA 264.5-8 chr14 73510169 73510457 + 1 NA intron (NM_001220484, intron 7 of 17) LTR87|LTR|ERVL? 19380 NM_024644 79697 Hs.509916 NM_024644 ENSG00000170468 RIOX1 C14orf169|JMJD9|MAPJD|NO66|ROX|URLC2|hsNO66 ribosomal oxygenase 1 protein-coding 252.5-29 chrX 77547472 77547799 + 1 NA intron (NM_000489, intron 30 of 34) intron (NM_000489, intron 30 of 34) 100246 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 270.25-4 chr14 84696270 84696720 + 1 NA Intergenic Tigger2a|DNA|TcMar-Tigger -575437 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 238.75-12 chr16 46686342 46686654 + 1 NA intron (NM_018206, intron 1 of 16) intron (NM_018206, intron 1 of 16) 2680 NM_018206 55737 Hs.454528 NM_018206 ENSG00000069329 VPS35 MEM3|PARK17 VPS35 retromer complex component protein-coding 154.75-14 chr10 107382591 107382785 + 1 NA Intergenic Intergenic -217982 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 270.75-13 chr2 137066039 137066550 + 1 NA intron (NM_001316349, intron 3 of 27) AluSz|SINE|Alu 300749 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 221.5-25 chr2 45898189 45898571 + 1 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 246705 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 207.75-16 chr15 76053439 76053990 + 1 NA Intergenic AluSz|SINE|Alu -6271 NM_152335 123591 Hs.661411 NM_152335 ENSG00000169758 TMEM266 C15orf27|HVRP1|HsHVRP1|hTMEM266 transmembrane protein 266 protein-coding 264.5-10 chr17 72408445 72408907 + 1 NA intron (NR_036488, intron 3 of 3) MLT1D|LTR|ERVL-MaLR 65865 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 398.5-3 chr22 28316323 28316771 + 1 NA intron (NM_001145418, intron 2 of 22) L1MD2|LINE|L1 -143322 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 162.75-67 chr6 53407177 53407388 + 1 NA Intergenic L2c|LINE|L2 -58103 NM_001242830 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 366.25-11 chr6 138958716 138959645 + 1 NA intron (NM_031922, intron 1 of 19) intron (NM_031922, intron 1 of 19) 29081 NM_031922 85021 Hs.334603 NM_031922 ENSG00000135597 REPS1 NBIA7|RALBP1 RALBP1 associated Eps domain containing 1 protein-coding 536.25 chr8 134731641 134732584 + 1 NA Intergenic Intergenic -19081 NM_001289394 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 163.25-90 chrX 146830989 146831361 + 1 NA Intergenic Intergenic -16431 NM_001244892 100133053 NM_001244892 ENSG00000235699 CXorf51B CXorf51A chromosome X open reading frame 51B protein-coding 258.75-16 chr4 66412236 66412582 + 1 NA Intergenic L1ME1|LINE|L1 135585 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 191.75-27 chr16 89672916 89673224 + 1 NA Intergenic MER4-int|LTR|ERV1 -13619 NR_027703 8558 Hs.699177 NM_003674 ENSG00000185324 CDK10 ALSAS|PISSLRE cyclin dependent kinase 10 protein-coding 301.5-2 chr14 63247065 63247415 + 1 NA intron (NM_020663, intron 1 of 4) intron (NM_020663, intron 1 of 4) 42797 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 181.5-19 chr13 82222419 82222735 + 1 NA Intergenic Intergenic -995594 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 412.5-3 chr2 82095981 82096826 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -629457 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 176.5-79 chr7 55378564 55378795 + 1 NA intron (NM_018697, intron 1 of 8) Tigger20a|DNA|TcMar-Tigger 13231 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 242.25-14 chr4 36818659 36818923 + 1 NA Intergenic Intergenic -176891 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 234.5-7 chr14 58082318 58082721 + 1 NA intron (NM_001001872, intron 5 of 7) MIRc|SINE|MIR 69694 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 207.25-57 chr9 91352142 91352405 + 1 NA intron (NM_001698, intron 3 of 9) AluSx|SINE|Alu 9651 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 249.75-8 chr2 181373741 181374019 + 1 NA intron (NR_130784, intron 4 of 4) L2b|LINE|L2 -68228 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 179.25-23 chr12 81222602 81222901 + 1 NA intron (NM_024560, intron 11 of 15) intron (NM_024560, intron 11 of 15) -56438 NR_120491 102724663 Hs.667264 NR_120491 ENSG00000257467 PPFIA2-AS1 - PPFIA2 antisense RNA 1 ncRNA 243.25-24 chr4 114337885 114338367 + 1 NA Intergenic L1ME1|LINE|L1 -260276 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 210.5-40 chr6 146195598 146195977 + 1 NA intron (NM_001278065, intron 3 of 9) intron (NM_001278065, intron 3 of 9) 166589 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 220.75-29 chr4 54980404 54980718 + 1 NA Intergenic L1MA2|LINE|L1 145034 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 173.25-42 chr20 6152318 6152557 + 1 NA Intergenic L1PA16|LINE|L1 -28893 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 203.75-50 chr8 121902598 121903013 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -261365 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 203.75-8 chr17 49603856 49604136 + 1 NA intron (NM_001007230, intron 10 of 11) intron (NM_001007230, intron 10 of 11) 22593 NM_001370732 8405 Hs.463382 NM_003563 ENSG00000121067 SPOP BTBD32|TEF2 speckle type BTB/POZ protein protein-coding 200.75-9 chr11 68847082 68847369 + 1 NA Intergenic MIR|SINE|MIR -5294 NM_001031847 1374 Hs.503043 NM_001876 ENSG00000110090 CPT1A CPT1|CPT1-L|L-CPT1 carnitine palmitoyltransferase 1A protein-coding 156.75-57 chr20 37512782 37513009 + 1 NA Intergenic Intergenic 7408 NM_001317075 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 170.5-83 chrX 67233155 67233397 + 1 NA Intergenic L1MEf|LINE|L1 -310745 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 195.5-19 chr15 66929731 66930038 + 1 NA Intergenic FLAM_A|SINE|Alu 26631 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 224.5-2 chr1 197600587 197601016 + 1 NA intron (NR_125340, intron 12 of 19) intron (NR_125340, intron 12 of 19) 174679 NR_125340 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 168.25-69 chr6 132083061 132083495 + 1 NA Intergenic Intergenic 31985 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 169.75-49 chr3 76336428 76336611 + 1 NA Intergenic Intergenic -550970 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 217.25-29 chr21 19291351 19291675 + 1 NA Intergenic L1MEi|LINE|L1 -531701 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 199.25-46 chr3 191781468 191781880 + 1 NA Intergenic MER76|LTR|ERVL 320511 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 328.5-6 chr4 94259323 94260128 + 1 NA intron (NM_001254949, intron 1 of 15) L1MC5|LINE|L1 6416 NM_001254949 56916 Hs.410406 NM_020159 ENSG00000163104 SMARCAD1 ADERM|BASNS|ETL1|HEL1|HRZ SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein-coding 298.25-2 chr11 98525277 98525819 + 1 NA Intergenic Intergenic -495401 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 177.25-74 chr8 58455689 58455959 + 1 NA Intergenic L2a|LINE|L2 44339 NM_000780 1581 Hs.1644 NM_000780 ENSG00000167910 CYP7A1 CP7A|CYP7|CYPVII cytochrome P450 family 7 subfamily A member 1 protein-coding 294.25-4 chr16 83233081 83233409 + 1 NA intron (NM_001220489, intron 4 of 12) intron (NM_001220489, intron 4 of 12) -242947 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 215.5-4 chr1 238285970 238286330 + 1 NA Intergenic Intergenic 199867 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 148.5-53 chr20 49263376 49263561 + 1 NA exon (NM_021035, exon 6 of 14) exon (NM_021035, exon 6 of 14) 14589 NM_021035 57169 Hs.371794 NM_021035 ENSG00000124201 ZNFX1 - zinc finger NFX1-type containing 1 protein-coding 146.5-3 chr1 117133189 117133365 + 1 NA Intergenic AluJo|SINE|Alu -11528 NM_025188 80263 Hs.301526 NM_025188 ENSG00000134253 TRIM45 RNF99 tripartite motif containing 45 protein-coding 338.75-4 chr17 48367214 48367702 + 1 NA intron (NM_001075099, intron 2 of 12) L1MA9|LINE|L1 62756 NM_003726 8631 Hs.316931 NM_003726 ENSG00000141293 SKAP1 HEL-S-81p|SCAP1|SKAP55 src kinase associated phosphoprotein 1 protein-coding 152.5-51 chr2 65206544 65206718 + 1 NA Intergenic Intergenic -21064 NM_005722 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 222.5-6 chr1 239050046 239050502 + 1 NA Intergenic Intergenic -336294 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 224.75-13 chr14 29874301 29874698 + 1 NA intron (NM_001330069, intron 1 of 18) L1MA4A|LINE|L1 52597 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 228.75-24 chr8 81792675 81793003 + 1 NA Intergenic L1MA6|LINE|L1 49346 NM_152837 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 169.25-66 chr9 104776956 104777257 + 1 NA non-coding (NR_130759, exon 5 of 5) non-coding (NR_130759, exon 5 of 5) 12977 NM_018376 55335 Hs.429294 NM_018376 ENSG00000165028 NIPSNAP3B FP944|NIPSNAP3|SNAP1 nipsnap homolog 3B protein-coding 207.25-31 chr2 50580648 50580891 + 1 NA intron (NM_001330093, intron 8 of 22) intron (NM_001330093, intron 8 of 22) 115493 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 255.25-7 chr14 59510906 59511312 + 1 NA intron (NM_001164399, intron 18 of 19) intron (NM_001164399, intron 18 of 19) 26592 NM_016475 51528 Hs.446850 NM_016475 ENSG00000050130 JKAMP C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP JNK1/MAPK8 associated membrane protein protein-coding 151.5-9 chr10 7016258 7016445 + 1 NA Intergenic Intergenic 170433 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 158.25-43 chr16 54555921 54556102 + 1 NA Intergenic Tigger5b|DNA|TcMar-Tigger -185312 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 204.25-25 chr2 178465672 178466140 + 1 NA exon (NM_181342, exon 4 of 4) exon (NM_181342, exon 4 of 4) 12667 NM_001369912 494513 Hs.87734 NM_001042702 ENSG00000204311 PJVK DFNB59 pejvakin protein-coding 210.75-7 chr10 72254975 72255597 + 1 NA Intergenic Intergenic -18638 NM_019058 54541 Hs.744875 NM_019058 ENSG00000168209 DDIT4 Dig2|REDD-1|REDD1 DNA damage inducible transcript 4 protein-coding 199.5-18 chr16 74828046 74828507 + 1 NA Intergenic L1M4|LINE|L1 -53456 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 178.5-64 chr9 26816517 26816888 + 1 NA Intergenic L1MB7|LINE|L1 76100 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 176.25-61 chr8 50278682 50279011 + 1 NA intron (NR_135797, intron 2 of 20) intron (NR_135797, intron 2 of 20) 114715 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 184.25-20 chr13 69442982 69443409 + 1 NA Intergenic L1MB2|LINE|L1 220849 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 197.75-59 chr6 22451955 22452216 + 1 NA Intergenic L1PA16|LINE|L1 -117481 NM_138574 154150 Hs.629246 NM_138574 ENSG00000112273 HDGFL1 HRP-1|Hdgfrp1|PWWP1|dJ309H15.1 HDGF like 1 protein-coding 245.25-15 chr3 29568192 29568758 + 1 NA intron (NM_001003792, intron 3 of 13) L3|LINE|CR1 287163 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 290.5-12 chr5 130208096 130208611 + 1 NA Intergenic Tigger2a|DNA|TcMar-Tigger 303888 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 348.75-13 chr8 101650040 101650468 + 1 NA intron (NM_024915, intron 14 of 15) L1MB5|LINE|L1 140715 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 297.75-7 chr2 222396105 222396798 + 1 NA Intergenic L1MEf|LINE|L1 -27537 NM_001320834 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 273.5-3 chr11 114711395 114711886 + 1 NA Intergenic L1MB2|LINE|L1 33113 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 169.5-98 chr8 134824410 134824648 + 1 NA Intergenic Charlie15a|DNA|hAT-Charlie -13540 NR_126028 552853 Hs.575612 NR_126028 ENSG00000253433 NCRNA00250 C8orf24 non-protein coding RNA 250 ncRNA 190.5-12 chr11 42265899 42266258 + 1 NA Intergenic Intergenic -12388 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 196.5-23 chr2 52425978 52426220 + 1 NA Intergenic GA-rich|Low_complexity|Low_complexity 55451 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 283.25 chr1 105693228 105693697 + 1 NA Intergenic Intergenic -74527 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 150.5-38 chr14 28096431 28096715 + 1 NA Intergenic Intergenic -423352 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 220.5-39 chr8 141247663 141248178 + 1 NA intron (NM_001286646, intron 1 of 7) L1M4|LINE|L1 -6647 NR_161376 105375787 Hs.567685 NR_161376 LOC105375787 - uncharacterized LOC105375787 ncRNA 223.5-43 chr8 22499652 22500005 + 1 NA intron (NM_005605, intron 4 of 13) L2a|LINE|L2 -52099 NM_005775 10174 Hs.528572 NM_005775 ENSG00000120896 SORBS3 SCAM-1|SCAM1|SH3D4 sorbin and SH3 domain containing 3 protein-coding 271.25-19 chr8 56483367 56484104 + 1 NA intron (NR_125813, intron 1 of 3) intron (NR_125813, intron 1 of 3) -37094 NM_001135690 5179 Hs.339831 NM_006211 ENSG00000181195 PENK PE|PENK-A proenkephalin protein-coding 346.25-2 chr22 26241466 26241974 + 1 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 72246 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 189.5-71 chr8 86885367 86885734 + 1 NA intron (NM_173538, intron 1 of 10) L4_C_Mam|LINE|RTE-X 19135 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 207.75-10 chr12 44333898 44334299 + 1 NA intron (NM_001286211, intron 6 of 6) MIRb|SINE|MIR 498017 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 243.5-24 chr8 121337382 121337768 + 1 NA Intergenic Intergenic -301771 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 183.25-23 chr14 69581279 69581559 + 1 NA Intergenic Intergenic -6548 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 210.75-30 chr3 89233928 89234344 + 1 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 126515 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 366.25-10 chr5 24143710 24144194 + 1 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 192604 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 202.25-18 chr14 44484664 44485028 + 1 NA Intergenic L1MA1|LINE|L1 22437 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 193.5-26 chr16 49290461 49290786 + 1 NA Intergenic Intergenic -8785 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 164.75-91 chr8 103440256 103440619 + 1 NA intron (NM_015420, intron 9 of 10) intron (NM_015420, intron 9 of 10) 25051 NM_015420 25879 Hs.532265 NM_015420 ENSG00000164934 DCAF13 GM83|HSPC064|Sof1|WDSOF1 DDB1 and CUL4 associated factor 13 protein-coding 316.75-8 chr5 12607725 12608381 + 1 NA intron (NR_033383, intron 2 of 3) L1PA11|LINE|L1 33196 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 241.25-12 chr18 3976268 3976686 + 1 NA intron (NR_102696, intron 1 of 4) L1ME4a|LINE|L1 14124 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 175.5-28 chr14 48669283 48669533 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -874394 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 191.5-2 chr1 66801644 66801921 + 1 NA promoter-TSS (NM_005478) promoter-TSS (NM_005478) -523 NM_005478 10022 Hs.251380 NM_005478 ENSG00000172410 INSL5 PRO182|UNQ156 insulin like 5 protein-coding 162.25-42 chr2 199147649 199148076 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR 310077 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 209.75-12 chr12 92159205 92159658 + 1 NA intron (NR_135037, intron 3 of 3) intron (NR_135037, intron 3 of 3) 13346 NR_135036 101928617 Hs.434392 NR_135036 LOC101928617 - uncharacterized LOC101928617 ncRNA 206.25 chr1 105503789 105504211 + 1 NA Intergenic L1MA9|LINE|L1 114935 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 257.5-3 chr1 117791888 117792172 + 1 NA Intergenic L1MB3|LINE|L1 137591 NM_001135589 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 147.25-92 chr7 39824672 39824849 + 1 NA Intergenic Intergenic 91192 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 145.75-97 chr5 131262394 131262694 + 1 NA Intergenic L2a|LINE|L2 -1465 NM_001038702 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 170.5-50 chr3 102363957 102364183 + 1 NA Intergenic L1M2c|LINE|L1 -70945 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 311.5-10 chr4 170741817 170742570 + 1 NA TTS (NR_134683) TTS (NR_134683) 1542 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 297.25-3 chr18 14021156 14021586 + 1 NA Intergenic Intergenic -105664 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 347.25-7 chr4 144820032 144820536 + 1 NA Intergenic Intergenic 174128 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 257.25-7 chr10 74990421 74991059 + 1 NA intron (NM_001370144, intron 11 of 15) intron (NM_001370144, intron 11 of 15) -30993 NR_145812 109623471 NR_145812 SNORD172 - small nucleolar RNA, C/D box 172 snoRNA 327.75-4 chr2 99635619 99636497 + 1 NA intron (NM_001025108, intron 12 of 23) intron (NM_001025108, intron 12 of 23) -146041 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 455.5 chr13 86202179 86202725 + 1 NA Intergenic Intergenic -403033 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 206.5-19 chr18 66897893 66898169 + 1 NA Intergenic L1MCb|LINE|L1 -183553 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 466.25 chr8 131726985 131727745 + 1 NA Intergenic MIR|SINE|MIR -176728 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 205.5-18 chr2 20030811 20031270 + 1 NA Intergenic AluSz|SINE|Alu -18372 NM_002381 4148 Hs.656199 NM_002381 ENSG00000132031 MATN3 DIPOA|EDM5|HOA|OADIP|OS2 matrilin 3 protein-coding 252.5-23 chr6 68851664 68852010 + 1 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 216555 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 346.25-3 chr3 155358269 155358809 + 1 NA Intergenic MER21C|LTR|ERVL -64856 NM_001352129 100507537 Hs.518341 NM_001352129 ENSG00000240045 STRIT1 DWORF small transmembrane regulator of ion transport 1 protein-coding 298.25-5 chr2 203770982 203771322 + 1 NA Intergenic AluSq2|SINE|Alu 64513 NM_001243077 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 189.5-50 chr5 5816583 5816876 + 1 NA Intergenic Intergenic 394052 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 224.75-18 chr17 54365175 54365644 + 1 NA Intergenic Intergenic -535282 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 179.5-80 chr8 121876705 121876926 + 1 NA Intergenic Intergenic -235375 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 295.75-5 chr2 166393481 166393861 + 1 NA Intergenic Intergenic -17684 NM_002977 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 330.5-6 chr20 58314919 58315358 + 1 NA intron (NM_020673, intron 2 of 6) intron (NM_020673, intron 2 of 6) 5423 NM_020673 57403 Hs.529044 NM_020673 ENSG00000124209 RAB22A - RAB22A, member RAS oncogene family protein-coding 302.5-8 chr3 166772483 166772957 + 1 NA Intergenic L2a|LINE|L2 -125963 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 306.75-12 chr8 118046161 118046863 + 1 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 65307 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 180.75-16 chr14 48251314 48251798 + 1 NA Intergenic Intergenic -456542 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 305.25-9 chr7 53272021 53272512 + 1 NA Intergenic Intergenic 236633 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 229.75-25 chr4 121679036 121679408 + 1 NA intron (NM_001154, intron 6 of 12) intron (NM_001154, intron 6 of 12) 17758 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 282.25-9 chr5 119494890 119495556 + 1 NA intron (NM_001199291, intron 12 of 24) intron (NM_001199291, intron 12 of 24) 42726 NM_001199292 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 192.25-65 chr9 103015346 103015916 + 1 NA intron (NM_001340, intron 6 of 7) intron (NM_001340, intron 6 of 7) 20298 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 186.5-19 chr14 48834000 48834469 + 1 NA Intergenic MIR|SINE|MIR 752146 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 238.5-16 chr18 34366722 34367150 + 1 NA Intergenic L2a|LINE|L2 -126354 NM_032975 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 362.5 chr16 52687168 52687839 + 1 NA Intergenic Intergenic -80528 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 330.25-5 chr3 189912990 189913664 + 1 NA Intergenic AluJr|SINE|Alu 83405 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 219.5-4 chr11 111616618 111616941 + 1 NA intron (NM_015191, intron 2 of 14) AluJb|SINE|Alu 14330 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 320.5-10 chr6 156584528 156585207 + 1 NA Intergenic L1MA3|LINE|L1 -192988 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 272.5-2 chr10 51950140 51950621 + 1 NA intron (NM_001098512, intron 5 of 17) intron (NM_001098512, intron 5 of 17) -250785 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 250.75-12 chr17 57924915 57925230 + 1 NA intron (NM_001271875, intron 1 of 10) intron (NM_001271875, intron 1 of 10) -21683 NM_001292025 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 181.5-16 chr12 10767347 10767674 + 1 NA intron (NR_120463, intron 1 of 6) intron (NR_120463, intron 1 of 6) 17276 NR_120463 101928162 Hs.112950 NR_120463 ENSG00000256888 LINC02366 - long intergenic non-protein coding RNA 2366 ncRNA 200.25-46 chr7 29611610 29611989 + 1 NA Intergenic Intergenic 46266 NM_001329997 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 230.5-22 chr4 22833919 22834327 + 1 NA Intergenic L1MA9|LINE|L1 120034 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 447.75 chr10 90417854 90418702 + 1 NA intron (NR_110657, intron 3 of 6) Tigger3b|DNA|TcMar-Tigger 122527 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 383.75-2 chr6 62668814 62669574 + 1 NA Intergenic Intergenic -382967 NM_001350622 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 185.75-17 chr13 74280556 74280767 + 1 NA Intergenic Intergenic 49217 NR_144451 100507612 Hs.447508 NR_144451 ENSG00000235532 LINC00402 - long intergenic non-protein coding RNA 402 ncRNA 216.75-22 chr3 62132819 62133112 + 1 NA intron (NM_002841, intron 6 of 29) intron (NM_002841, intron 6 of 29) 185982 NR_038282 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 268.5-16 chr3 115083353 115083715 + 1 NA intron (NM_001348800, intron 1 of 11) intron (NM_001348800, intron 1 of 11) -12120 NM_001164343 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 160.5-81 chr4 169182477 169182681 + 1 NA intron (NM_020870, intron 2 of 11) intron (NM_020870, intron 2 of 11) 88377 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 197.5-11 chr12 16899182 16899550 + 1 NA Intergenic Intergenic -89381 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 161.75-63 chr4 66947784 66947980 + 1 NA Intergenic MIRc|SINE|MIR 474118 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 195.25-45 chr5 5969436 5969769 + 1 NA Intergenic Intergenic 367690 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 163.75-62 chr5 125943902 125944338 + 1 NA Intergenic Charlie1a|DNA|hAT-Charlie -235457 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 327.25-4 chr2 122960351 122960752 + 1 NA Intergenic Intergenic 112930 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 325.5-5 chr2 166795521 166796056 + 1 NA Intergenic MLT1J1|LTR|ERVL-MaLR -92699 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 359.5-3 chr2 46673957 46674481 + 1 NA Intergenic Intergenic -24741 NM_014011 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 218.5-32 chr5 27741392 27741636 + 1 NA Intergenic L1M5|LINE|L1 269222 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 229.5-12 chr15 24157163 24157460 + 1 NA Intergenic L1M3|LINE|L1 12637 NR_152824 791115 Hs.560378 NR_026647 ENSG00000260551 PWRN2 NCRNA00199 Prader-Willi region non-protein coding RNA 2 ncRNA 288.5-11 chr3 84512126 84512711 + 1 NA Intergenic L1P4a|LINE|L1 357157 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 175.75-42 chr3 1274288 1274654 + 1 NA intron (NM_001289080, intron 4 of 22) intron (NM_001289080, intron 4 of 22) 181447 NM_001349350 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 350.5-6 chr8 81363591 81363971 + 1 NA Intergenic L2|LINE|L2 83245 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 194.5-11 chr11 17576520 17576785 + 1 NA intron (NM_001277269, intron 20 of 54) intron (NM_001277269, intron 20 of 54) 29279 NM_001277269 340990 Hs.688380 NM_198497 ENSG00000188162 OTOG DFNB18B|MLEMP|OTGN otogelin protein-coding 212.25-18 chr17 30286324 30286568 + 1 NA intron (NM_000386, intron 5 of 11) intron (NM_000386, intron 5 of 11) 5498 NM_000386 642 Hs.371914 NM_000386 ENSG00000108578 BLMH BH|BMH bleomycin hydrolase protein-coding 161.75-47 chr3 41948628 41948891 + 1 NA intron (NR_136342, intron 2 of 34) L1MB3|LINE|L1 13344 NM_001322501 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 233.5-18 chr3 60706361 60706617 + 1 NA intron (NR_148921, intron 4 of 4) intron (NR_148921, intron 4 of 4) -88619 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 146.75-13 chr10 54552272 54552478 + 1 NA intron (NM_001142771, intron 2 of 34) intron (NM_001142771, intron 2 of 34) 55582 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 152.75-24 chr12 23443174 23443397 + 1 NA Intergenic Intergenic 141301 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 238.25-15 chr2 61442735 61443190 + 1 NA intron (NM_014709, intron 1 of 79) L1MA5A|LINE|L1 -25585 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 280.5-7 chr2 198385733 198386124 + 1 NA Intergenic Intergenic -10831 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 274.5-3 chr10 12076840 12077219 + 1 NA intron (NM_018706, intron 1 of 16) intron (NM_018706, intron 1 of 16) 8075 NM_018706 55526 Hs.104980 NM_018706 ENSG00000181192 DHTKD1 AMOXAD|CMT2Q dehydrogenase E1 and transketolase domain containing 1 protein-coding 184.5-38 chr17 71888228 71888610 + 1 NA Intergenic MLT1E2|LTR|ERVL-MaLR 137560 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 212.25-41 chr7 42489109 42489500 + 1 NA Intergenic Intergenic 217143 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 284.5-11 chr6 34759520 34760082 + 1 NA intron (NM_003093, intron 2 of 5) Charlie1a|DNA|hAT-Charlie 2296 NM_003093 6631 Hs.1063 NM_003093 ENSG00000124562 SNRPC U1C|Yhc1 small nuclear ribonucleoprotein polypeptide C protein-coding 190.25-61 chr8 121016913 121017214 + 1 NA Intergenic Intergenic -205017 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 311.5-4 chr11 82562757 82563166 + 1 NA Intergenic L2c|LINE|L2 -159048 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 170.5-22 chr14 85703342 85703602 + 1 NA Intergenic Intergenic 170123 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 222.25-4 chr1 211972027 211972327 + 1 NA intron (NM_015434, intron 13 of 19) L1ME3E|LINE|L1 -63376 NM_001286230 51514 Hs.656473 NM_016448 ENSG00000143476 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog protein-coding 164.75-34 chr18 60097440 60097740 + 1 NA Intergenic L1MA4|LINE|L1 197594 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 321.5-3 chr4 44201968 44202353 + 1 NA intron (NM_198353, intron 1 of 1) L1PA16|LINE|L1 185098 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 149.5-46 chr2 103742851 103743107 + 1 NA Intergenic Intergenic 665353 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 425.5 chr8 137254745 137255390 + 1 NA Intergenic Intergenic 158521 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 159.5-47 chr2 203352152 203352338 + 1 NA intron (NM_001282932, intron 1 of 9) Tigger3b|DNA|TcMar-Tigger -14639 NM_001282927 10152 Hs.471156 NM_005759 ENSG00000138443 ABI2 ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB abl interactor 2 protein-coding 197.75-37 chr2 128056903 128057287 + 1 NA Intergenic LTR49-int|LTR|ERV1 -29036 NM_001330299 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 171.5-54 chr20 13730774 13730965 + 1 NA intron (NM_001276380, intron 10 of 13) intron (NM_001276380, intron 10 of 13) 54017 NM_016649 51575 Hs.369284 NM_016649 ENSG00000089048 ESF1 ABTAP|C20orf6|HDCMC28P|bA526K24.1 ESF1 nucleolar pre-rRNA processing protein homolog protein-coding 251.5-2 chr1 189665661 189666340 + 1 NA Intergenic Intergenic 810010 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 255.75-15 chr8 78043801 78044161 + 1 NA Intergenic Intergenic -472359 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 147.25-32 chr14 57463721 57463999 + 1 NA Intergenic LTR16C|LTR|ERVL 29997 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 171.5-23 chr13 26414922 26415246 + 1 NA Intergenic L1M4c|LINE|L1 -142599 NM_006646 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 268.25-19 chr5 108298629 108299005 + 1 NA intron (NM_001163315, intron 4 of 8) intron (NM_001163315, intron 4 of 8) 83281 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 345.25-3 chr2 71336642 71337095 + 1 NA intron (NM_001252613, intron 1 of 27) intron (NM_001252613, intron 1 of 27) 5086 NM_014497 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 250.75-32 chr9 102608349 102608832 + 1 NA intron (NR_103830, intron 3 of 4) intron (NR_103830, intron 3 of 4) 88953 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 192.75-23 chr17 49604907 49605298 + 1 NA intron (NM_001007230, intron 10 of 11) intron (NM_001007230, intron 10 of 11) 21487 NM_001370732 8405 Hs.463382 NM_003563 ENSG00000121067 SPOP BTBD32|TEF2 speckle type BTB/POZ protein protein-coding 162.5-39 chr2 20858459 20858683 + 1 NA Intergenic Intergenic -35441 NM_001282719 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 159.75-9 chr1 200415039 200415319 + 1 NA Intergenic Intergenic -5143 NM_001281294 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 186.25-58 chr7 6084427 6084725 + 1 NA Intergenic Intergenic -20373 NM_001365764 84132 Hs.31856 NM_032172 ENSG00000106346 USP42 - ubiquitin specific peptidase 42 protein-coding 234.25-7 chr2 17233411 17233672 + 1 NA Intergenic L1PA15|LINE|L1 284899 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 321.5 chr1 87053570 87054183 + 1 NA intron (NM_012262, intron 1 of 6) intron (NM_012262, intron 1 of 6) -75889 NR_026988 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 186.75-27 chr14 48000661 48001050 + 1 NA Intergenic Intergenic -205841 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 178.75-72 chr9 105826876 105827292 + 1 NA Intergenic L1M1|LINE|L1 132543 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 215.25-42 chr7 121888174 121888511 + 1 NA intron (NM_001206839, intron 1 of 28) intron (NM_001206839, intron 1 of 28) 15181 NM_001206838 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 277.25-8 chr5 2604058 2604526 + 1 NA Intergenic Intergenic -108299 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 358.5-2 chr3 173960100 173960752 + 1 NA intron (NM_001365928, intron 4 of 6) L1M5|LINE|L1 -39630 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 151.5-34 chr16 13500617 13500806 + 1 NA Intergenic Intergenic -419446 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 204.75-44 chr5 80207552 80207892 + 1 NA intron (NR_126061, intron 1 of 13) intron (NR_126061, intron 1 of 13) 48326 NR_126060 256987 Hs.288232 NM_178276 ENSG00000164300 SERINC5 C5orf12|TPO1 serine incorporator 5 protein-coding 193.25-36 chr20 45941043 45941454 + 1 NA intron (NM_022104, intron 7 of 16) intron (NM_022104, intron 7 of 16) 6565 NM_022104 63935 Hs.472856 NM_022104 ENSG00000100982 PCIF1 C20orf67|CAPAM|PPP1R121|hCAPAM|hPCIF1 PDX1 C-terminal inhibiting factor 1 protein-coding 220.5-28 chr5 68857718 68858094 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger 172021 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 197.5-53 chr6 114480895 114481124 + 1 NA Intergenic Intergenic -418132 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 338.5-2 chr12 7262846 7263286 + 1 NA Intergenic AluJb|SINE|Alu -41266 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 270.25 chr1 74116425 74116750 + 1 NA intron (NM_001105659, intron 4 of 7) intron (NM_001105659, intron 4 of 7) 81589 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 191.5-61 chr8 132462623 132462895 + 1 NA intron (NM_004519, intron 1 of 14) MIRb|SINE|MIR -15497 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 199.5-52 chr8 137131099 137131359 + 1 NA Intergenic Intergenic 282359 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 217.25-46 chr9 6992881 6993278 + 1 NA intron (NR_148680, intron 13 of 21) intron (NR_148680, intron 13 of 21) 235729 NR_148679 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 246.5-4 chr10 120075203 120075759 + 1 NA Intergenic Intergenic 116968 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 247.25-23 chr8 78164553 78165069 + 1 NA Intergenic L1MB3|LINE|L1 -351529 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 240.75-22 chr6 51218169 51218627 + 1 NA Intergenic Intergenic 399527 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 189.75-25 chr14 88388551 88388861 + 1 NA intron (NM_001040428, intron 1 of 10) AluJr|SINE|Alu 3049 NM_018418 55812 Hs.525518 NM_018418 ENSG00000042317 SPATA7 HEL-S-296|HSD-3.1|HSD3|LCA3 spermatogenesis associated 7 protein-coding 238.5-7 chr10 26816600 26816994 + 1 NA intron (NM_001012752, intron 2 of 9) Tigger6a|DNA|TcMar-Tigger 44290 NM_001348034 10006 Hs.508148 NM_005470 ENSG00000136754 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl interactor 1 protein-coding 251.75-15 chr2 220035679 220035948 + 1 NA Intergenic Intergenic -129248 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 286.75-7 chr3 191763535 191763924 + 1 NA Intergenic L1MA1|LINE|L1 302566 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 378.5-4 chr3 181767794 181768415 + 1 NA Intergenic Intergenic 56179 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 184.5-34 chr16 47703233 47703478 + 1 NA Intergenic L1PA10|LINE|L1 -155226 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 152.25-3 chr1 42319847 42320015 + 1 NA intron (NM_001198851, intron 2 of 14) intron (NM_001198851, intron 2 of 14) 15024 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 197.75-21 chr14 65732221 65732517 + 1 NA intron (NM_004480, intron 8 of 9) L2c|LINE|L2 261267 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 215.75-2 chr1 72944915 72945131 + 1 NA Intergenic Intergenic -361147 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 207.5-34 chr5 11908422 11908933 + 1 NA Intergenic Intergenic -4231 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 192.75-44 chr4 60573587 60573828 + 1 NA Intergenic MIRb|SINE|MIR -348912 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 226.25-30 chr8 87617918 87618157 + 1 NA Intergenic L1M6|LINE|L1 255978 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 228.5-47 chr9 30294611 30294981 + 1 NA Intergenic Intergenic 113658 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 296.5-8 chr20 8521116 8521647 + 1 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) 272677 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 183.5-29 chr2 51532640 51532846 + 1 NA intron (NR_135237, intron 5 of 10) L1ME1|LINE|L1 500142 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 174.5-82 chr8 84138044 84138394 + 1 NA Intergenic Intergenic -44568 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 224.75-27 chr4 100285121 100285524 + 1 NA Intergenic Intergenic -94854 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 185.5-63 chr5 164966303 164966770 + 1 NA Intergenic Kanga11a|DNA|TcMar-Tc2 496257 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 356.75 chr10 65451660 65452362 + 1 NA Intergenic Intergenic -119414 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 420.25 chr10 24042843 24043446 + 1 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -165647 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 194.25-14 chr17 76234276 76234690 + 1 NA intron (NM_052916, intron 1 of 18) L1MB7|LINE|L1 6010 NM_052916 114804 Hs.500643 NM_052916 ENSG00000141576 RNF157 - ring finger protein 157 protein-coding 329.75 chr1 96699050 96699424 + 1 NA Intergenic L1MEc|LINE|L1 -22368 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 243.25-31 chrX 154701228 154701569 + 1 NA intron (NR_104114, intron 3 of 8) L1M6B|LINE|L1 -47819 NM_172377 30848 Hs.87225 NM_020994 ENSG00000126890 CTAG2 CAMEL|CT2|CT6.2|CT6.2a|CT6.2b|ESO2|LAGE-1|LAGE2B cancer/testis antigen 2 protein-coding 273.75-10 chr7 80985454 80985892 + 1 NA Intergenic AluSp|SINE|Alu -63284 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 271.75-11 chr3 1227008 1227368 + 1 NA intron (NM_001289080, intron 3 of 22) intron (NM_001289080, intron 3 of 22) 134164 NM_001349350 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 275.75-16 chr8 113930620 113931203 + 1 NA Intergenic (AAT)n|Simple_repeat|Simple_repeat -493972 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 241.5-25 chr5 128157618 128157933 + 1 NA intron (NM_001046, intron 15 of 26) intron (NM_001046, intron 15 of 26) 74009 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 169.75-33 chr14 84336820 84337013 + 1 NA Intergenic MER4E1|LTR|ERV1 -935016 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 230.5-7 chr11 57682510 57682909 + 1 NA intron (NM_015457, intron 3 of 11) intron (NM_015457, intron 3 of 11) 14595 NM_015457 25921 Hs.27239 NM_015457 ENSG00000156599 ZDHHC5 DHHC5|ZNF375 zinc finger DHHC-type containing 5 protein-coding 168.25-74 chr7 8269561 8269821 + 1 NA intron (NR_125740, intron 3 of 5) L1MEc|LINE|L1 -7079 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 263.5-8 chr12 41276588 41277218 + 1 NA intron (NM_001164595, intron 3 of 9) L1MC3|LINE|L1 88583 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 202.5-58 chr7 145995361 145995682 + 1 NA Intergenic L1MB5|LINE|L1 -778750 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 160.5-115 chr8 120757614 120757840 + 1 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -3526 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 272.75-14 chr20 59562265 59562728 + 1 NA Intergenic L1MB3|LINE|L1 -15013 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 327.25 chr12 20203762 20204210 + 1 NA Intergenic L1ME1|LINE|L1 -76085 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 365.75 chr7 117042917 117043436 + 1 NA intron (NR_161419, intron 1 of 15) intron (NR_161419, intron 1 of 15) 22958 NM_001369599 7982 Hs.368131 NM_018412 ENSG00000004866 ST7 ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7 suppression of tumorigenicity 7 protein-coding 182.75-31 chr18 2361283 2361542 + 1 NA Intergenic Intergenic 210093 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 182.75-73 chr8 103403264 103403487 + 1 NA intron (NR_102337, intron 2 of 5) intron (NR_102337, intron 2 of 5) 11732 NM_030780 81034 Hs.532265 NM_030780 ENSG00000164933 SLC25A32 MFT|MFTC|RREI solute carrier family 25 member 32 protein-coding 238.5-23 chr20 61038960 61039407 + 1 NA Intergenic Intergenic -39881 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 215.5-49 chr7 79641044 79641325 + 1 NA Intergenic Intergenic 187224 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 212.25-15 chr15 36050502 36051028 + 1 NA Intergenic Intergenic 123909 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 170.5-65 chr6 162376227 162376437 + 1 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -350800 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 150.5-114 chr8 63431252 63431417 + 1 NA Intergenic MER57A1|LTR|ERV1 -34515 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 159.5-31 chr17 82862942 82863190 + 1 NA intron (NM_005993, intron 13 of 38) intron (NM_005993, intron 13 of 38) -23044 NM_024702 79755 Hs.464391 NM_024702 ENSG00000141579 ZNF750 ZFP750 zinc finger protein 750 protein-coding 177.5-55 chr8 75043407 75043663 + 1 NA Intergenic Intergenic 43380 NM_001286777 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 150.25-84 chr5 100998721 100999000 + 1 NA Intergenic Intergenic -95578 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 303.75-2 chr14 45457010 45457615 + 1 NA Intergenic (TATAATTA)n|Simple_repeat|Simple_repeat -204110 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 259.75-5 chr10 111656373 111656853 + 1 NA Intergenic Tigger4b|DNA|TcMar-Tigger 527152 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 170.5-81 chr9 91953983 91954212 + 1 NA Intergenic L2c|LINE|L2 -3869 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 282.5-5 chr11 112172318 112172859 + 1 NA TTS (NM_031275) TTS (NM_031275) -2924 NM_031938 83875 Hs.728325 NM_031938 ENSG00000197580 BCO2 B-DIOX-II|BCDO2 beta-carotene oxygenase 2 protein-coding 168.75-46 chr2 103435979 103436314 + 1 NA Intergenic Intergenic -451717 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 182.5-34 chr20 59064982 59065213 + 1 NA Intergenic Intergenic -22251 NR_037929 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 265.5-18 chr5 166587331 166587785 + 1 NA Intergenic Intergenic 338812 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 347.25-2 chr14 85751652 85752234 + 1 NA Intergenic Intergenic -182735 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 245.75-2 chr1 73671765 73672352 + 1 NA Intergenic L1MC4|LINE|L1 -2621 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 235.75-11 chr14 58217057 58217434 + 1 NA intron (NM_018477, intron 7 of 12) intron (NM_018477, intron 7 of 12) 17096 NM_018477 55860 Hs.509451 NM_018477 ENSG00000131966 ACTR10 ACTR11|Arp10|Arp11|HARP11 actin related protein 10 protein-coding 184.75 chr1 37196034 37196238 + 1 NA Intergenic L1MA7|LINE|L1 34573 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 167.75-55 chr3 27448307 27448638 + 1 NA intron (NM_001258380, intron 3 of 23) intron (NM_001258380, intron 3 of 23) 8306 NM_001258380 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 253.5-25 chr7 47733744 47734160 + 1 NA Intergenic Intergenic -27524 NR_038407 84847 Hs.488236 NR_038407 ENSG00000146666 LINC00525 - long intergenic non-protein coding RNA 525 ncRNA 188.25-23 chr18 47140717 47140978 + 1 NA intron (NM_032124, intron 1 of 6) L1ME3D|LINE|L1 9653 NM_001318765 84064 Hs.465041 NM_032124 ENSG00000167220 HDHD2 3110052N05Rik|HEL-S-301 haloacid dehalogenase like hydrolase domain containing 2 protein-coding 235.25-21 chr9 71568274 71568588 + 1 NA Intergenic L1M4a1|LINE|L1 -121460 NM_001366143 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 227.75-3 chr10 55697036 55697449 + 1 NA Intergenic Intergenic -69300 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 221.5-26 chr2 51193572 51193823 + 1 NA intron (NR_135237, intron 2 of 10) L1PA11|LINE|L1 161096 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 164.5-5 chr10 44176619 44176886 + 1 NA Intergenic Intergenic -115998 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 147.75-39 chr15 56321318 56321601 + 1 NA Intergenic Intergenic -43965 NM_001286449 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 220.5-41 chrX 36763267 36763685 + 1 NA Intergenic Intergenic -244883 NM_001013736 442444 Hs.535216 NM_001013736 ENSG00000198173 FAM47C - family with sequence similarity 47 member C protein-coding 188.5-4 chr1 165623187 165623557 + 1 NA Intergenic L1MC4|LINE|L1 -7862 NM_004528 4259 Hs.191734 NM_004528 ENSG00000143198 MGST3 GST-III microsomal glutathione S-transferase 3 protein-coding 164.25-69 chr4 86944529 86944855 + 1 NA intron (NM_001166693, intron 1 of 20) intron (NM_001166693, intron 1 of 20) 9690 NM_001166693 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 247.5-36 chr8 93071199 93071626 + 1 NA Intergenic Intergenic 41661 NR_107051 102467005 NR_107051 ENSG00000277063 MIR8084 hsa-mir-8084 microRNA 8084 ncRNA 261.5-9 chr18 72783458 72783934 + 1 NA exon (NM_001354020, exon 7 of 11) exon (NM_001354020, exon 7 of 11) 69686 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 203.5-28 chr2 156823710 156824091 + 1 NA Intergenic Intergenic 387521 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 211.5-49 chr8 123809254 123809587 + 1 NA intron (NM_144963, intron 22 of 23) intron (NM_144963, intron 22 of 23) 40981 NM_001317917 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 187.5-53 chr4 121341074 121341353 + 1 NA intron (NM_198179, intron 1 of 5) MER102b|DNA|hAT-Charlie 39805 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 285.5 chr1 71965492 71965826 + 1 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) -128647 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 206.5-43 chr7 7488697 7488922 + 1 NA intron (NM_001037763, intron 13 of 34) intron (NM_001037763, intron 13 of 34) 47064 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 179.5-29 chr17 57587730 57587940 + 1 NA intron (NM_001322250, intron 7 of 13) intron (NM_001322250, intron 7 of 13) 20577 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 146.75-121 chr8 121748366 121748669 + 1 NA Intergenic L2a|LINE|L2 -107077 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 216.5-7 chr10 112054272 112054605 + 1 NA Intergenic Intergenic 129327 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 274.25-16 chr8 123328900 123329397 + 1 NA intron (NM_014109, intron 24 of 27) L2|LINE|L2 -18886 NR_037516 100500863 NR_037516 ENSG00000207704 MIR548AA1 - microRNA 548aa-1 ncRNA 329.5-2 chr12 22995755 22996338 + 1 NA Intergenic Intergenic -179590 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 336.5-2 chr2 129126991 129127852 + 1 NA Intergenic Intergenic 146470 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 432.5 chr5 15362281 15362948 + 1 NA Intergenic Intergenic -96054 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 151.25-33 chr17 66501018 66501226 + 1 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) -84268 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 379.25-2 chr3 25318654 25319453 + 1 NA intron (NM_001290216, intron 4 of 10) intron (NM_001290216, intron 4 of 10) -21749 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 468.5 chr2 38504966 38505696 + 1 NA intron (NR_110259, intron 1 of 4) L1M5|LINE|L1 10409 NR_110259 101929596 Hs.537341 NR_110259 LINC02613 - long intergenic non-protein coding RNA 2613 ncRNA 233.5-22 chr4 55608765 55609020 + 1 NA intron (NR_120489, intron 4 of 8) intron (NR_120489, intron 4 of 8) -16647 NM_152401 132954 Hs.223712 NM_152401 ENSG00000163440 PDCL2 GCPHLP phosducin like 2 protein-coding 327.25-5 chr4 80754569 80754967 + 1 NA intron (NM_001206997, intron 4 of 6) L1MCa|LINE|L1 -275940 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 218.25-25 chr3 86664325 86664781 + 1 NA Intergenic Intergenic 182610 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 248.5 chr10 57158639 57159177 + 1 NA Intergenic L1MA4A|LINE|L1 145651 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 183.5-17 chr14 64280156 64280519 + 1 NA intron (NR_073496, intron 2 of 7) intron (NR_073496, intron 2 of 7) 2738 NM_001271877 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 214.25-23 chr4 30513320 30513702 + 1 NA Intergenic Intergenic -206858 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 248.75-16 chr5 104091129 104091760 + 1 NA Intergenic Intergenic -528655 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 450.5-2 chr10 38527871 38528886 + 1 NA Intergenic Intergenic 100232 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 228.5-17 chr11 115280223 115280637 + 1 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -53147 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 198.5-38 chr4 46550557 46550771 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -160536 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 225.75-30 chr7 43718412 43718690 + 1 NA intron (NM_001371314, intron 1 of 7) MER99|DNA|hAT? 10972 NM_001371317 302.5-5 chr17 48342489 48342861 + 1 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) 48328 NR_131239 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 233.25-33 chr8 88206925 88207361 + 1 NA intron (NM_005941, intron 1 of 9) Tigger2|DNA|TcMar-Tigger 120340 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 279.5-5 chr2 79781813 79782220 + 1 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 84567 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 236.5-15 chr2 122838828 122839200 + 1 NA Intergenic LTR57-int|LTR|ERVL 234467 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 197.5-44 chr3 117698900 117699110 + 1 NA Intergenic MIRb|SINE|MIR -8080 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 205.5-49 chr9 84621671 84622025 + 1 NA Intergenic Intergenic -46610 NM_001291937 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 204.5-18 chr2 123938589 123938850 + 1 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 86455 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 356.5-4 chr2 145011165 145011660 + 1 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 343445 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 257.5 chr1 43067906 43068275 + 1 NA Intergenic Intergenic -79814 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 228.5-31 chr2 137875545 137875824 + 1 NA Intergenic Intergenic 52248 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 230.5-3 chr1 160587665 160588150 + 1 NA Intergenic Intergenic -8391 NM_001184882 8832 Hs.398093 NM_003874 ENSG00000066294 CD84 LY9B|SLAMF5|hCD84|mCD84 CD84 molecule protein-coding 260.75-22 chr7 32072566 32073011 + 1 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -1352 NM_001322057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 148.75-11 chr10 52572794 52572964 + 1 NA intron (NR_155748, intron 1 of 2) AluSq2|SINE|Alu -102346 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 246.75-20 chr9 97627695 97628032 + 1 NA intron (NM_139246, intron 1 of 9) L2a|LINE|L2 5505 NM_139246 158427 Hs.723236 NM_139246 ENSG00000136925 TSTD2 C9orf97 thiosulfate sulfurtransferase like domain containing 2 protein-coding 232.5-26 chr21 29276006 29276364 + 1 NA intron (NR_027072, intron 1 of 1) (TAATTTA)n|Simple_repeat|Simple_repeat -22737 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 175.75-4 chr10 7674755 7674978 + 1 NA Intergenic Intergenic -7868 NM_001001851 80760 Hs.498586 NM_030569 ENSG00000123243 ITIH5 ITI-HC5|PP14776 inter-alpha-trypsin inhibitor heavy chain 5 protein-coding 222.5 chr1 5659247 5659520 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR 203358 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 227.5-20 chr4 122346221 122346462 + 1 NA intron (NM_015312, intron 72 of 83) intron (NM_015312, intron 72 of 83) -32670 NM_139243 132612 Hs.518957 NM_139243 ENSG00000164113 ADAD1 Tenr adenosine deaminase domain containing 1 protein-coding 348.5-5 chr6 122935316 122935919 + 1 NA Intergenic Intergenic -60618 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 333.5-5 chr4 72444124 72444750 + 1 NA intron (NM_014243, intron 3 of 21) intron (NM_014243, intron 3 of 21) 124784 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 209.25-20 chr2 27480268 27480634 + 1 NA intron (NM_015662, intron 8 of 47) intron (NM_015662, intron 8 of 47) 9292 NM_015662 26160 Hs.127401 NM_015662 ENSG00000138002 IFT172 BBS20|NPHP17|RP71|SLB|SRTD10|osm-1|wim intraflagellar transport 172 protein-coding 147.25-21 chr11 22378728 22378975 + 1 NA 3' UTR (NM_020346, exon 12 of 12) 3' UTR (NM_020346, exon 12 of 12) 40470 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 172.5-28 chr16 17349061 17349255 + 1 NA intron (NM_022166, intron 2 of 11) intron (NM_022166, intron 2 of 11) 121802 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 432.75 chr1 184508014 184508822 + 1 NA intron (NM_030806, intron 3 of 5) intron (NM_030806, intron 3 of 5) 121389 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 186.75-69 chr5 44826890 44827207 + 1 NA Intergenic Intergenic 18101 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 318.5-3 chr2 217625977 217626464 + 1 NA intron (NR_026597, intron 1 of 12) intron (NR_026597, intron 1 of 12) 130373 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 228.5 chr1 73159798 73160130 + 1 NA Intergenic Intergenic -146206 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 182.5-19 chr14 61208442 61208799 + 1 NA Intergenic Intergenic 72718 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 195.5-2 chr1 84926123 84926425 + 1 NA 3' UTR (NM_001330647, exon 15 of 15) 3' UTR (NM_001330647, exon 15 of 15) -33068 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 220.5-38 chr8 127838919 127839212 + 1 NA intron (NR_003367, intron 1 of 8) Tigger3a|DNA|TcMar-Tigger 43103 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 394.5 chr15 59775612 59776373 + 1 NA Intergenic Intergenic -86672 NM_004330 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 215.75-10 chr14 80482333 80482643 + 1 NA Intergenic Intergenic -251431 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 269.25-17 chr6 100165502 100166118 + 1 NA Intergenic MIR|SINE|MIR -171572 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 262.75-6 chr13 94036006 94036373 + 1 NA intron (NM_005708, intron 4 of 8) intron (NM_005708, intron 4 of 8) 151802 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 320.75-2 chr10 62403737 62404233 + 1 NA intron (NM_199451, intron 3 of 7) intron (NM_199451, intron 3 of 7) -28858 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 286.5-6 chr2 18089107 18089551 + 1 NA Intergenic LTR71B|LTR|ERV1 210662 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 170.25-51 chr3 164831157 164831378 + 1 NA intron (NR_126405, intron 1 of 3) intron (NR_126405, intron 1 of 3) 213 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 190.5-23 chr18 13964418 13964721 + 1 NA Intergenic L1MA9|LINE|L1 -48862 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 342.5-7 chr8 128522034 128522614 + 1 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 42355 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 281.75-9 chr2 119860298 119860680 + 1 NA intron (NM_002830, intron 2 of 26) MLT1L|LTR|ERVL-MaLR 100567 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 176.25-14 chr11 80865552 80865816 + 1 NA Intergenic Intergenic -102881 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 266.75-18 chr5 66275513 66275813 + 1 NA Intergenic Intergenic -66217 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 200.5-7 chr10 81285558 81285879 + 1 NA Intergenic Intergenic -589476 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 281.5-31 chr8 108253344 108253789 + 1 NA Intergenic L2b|LINE|L2 -4849 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 182.75-36 chr2 103758118 103758488 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR 650029 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 204.75 chr1 45038134 45038386 + 1 NA intron (NM_020883, intron 8 of 13) intron (NM_020883, intron 8 of 13) 26006 NR_036510 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 234.75-12 chr17 58948650 58949183 + 1 NA intron (NM_014906, intron 1 of 6) L1M2c|LINE|L1 157964 NM_001353085 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 260.5-23 chr9 123770370 123770707 + 1 NA intron (NM_001352965, intron 1 of 20) intron (NM_001352965, intron 1 of 20) 159588 NM_001352967 57706 Hs.744995 NM_020946 ENSG00000119522 DENND1A FAM31A|KIAA1608 DENN domain containing 1A protein-coding 201.75-30 chr4 166446000 166446374 + 1 NA Intergenic Intergenic 572950 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 314.75-4 chr2 67799718 67800245 + 1 NA intron (NR_110271, intron 2 of 2) intron (NR_110271, intron 2 of 2) 25581 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 241.5-5 chr14 59904515 59904994 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -14959 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 242.5-4 chr1 229762260 229762681 + 1 NA Intergenic Intergenic 123348 NR_146476 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 278.25-8 chr18 72725207 72725659 + 1 NA Intergenic Intergenic 127949 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 206.5-52 chr9 28519699 28520064 + 1 NA intron (NM_152570, intron 2 of 6) L1MD|LINE|L1 199424 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 279.75-18 chr8 88989384 88989936 + 1 NA Intergenic Intergenic -662177 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 164.5-95 chr8 90400028 90400330 + 1 NA Intergenic L1MA4A|LINE|L1 178691 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 275.5-19 chr6 6967374 6967705 + 1 NA Intergenic Intergenic -140204 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 244.5-12 chr15 46879532 46879827 + 1 NA Intergenic Intergenic -304410 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 162.75 chr1 92679350 92679686 + 1 NA intron (NM_001350198, intron 9 of 19) intron (NM_001350198, intron 9 of 19) 105590 NM_001350198 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 264.25-12 chr2 47999795 48000143 + 1 NA Intergenic Intergenic -94176 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 331.25-3 chr15 47561030 47561611 + 1 NA intron (NM_001198999, intron 3 of 19) L1M4a2|LINE|L1 -156185 NM_001358352 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 189.25-40 chr5 62681134 62681538 + 1 NA Intergenic Intergenic 102517 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 209.75-11 chr12 65571522 65571863 + 1 NA intron (NR_120434, intron 3 of 4) MER112|DNA|hAT-Charlie -14381 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 266.5-8 chr18 1943427 1943716 + 1 NA Intergenic L1MA9|LINE|L1 -583942 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 297.75-21 chr8 137680837 137681461 + 1 NA Intergenic Intergenic -267561 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 250.75 chr1 67005294 67005842 + 1 NA intron (NM_015139, intron 11 of 11) intron (NM_015139, intron 11 of 11) 48580 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 275.5-3 chr1 164907786 164908354 + 1 NA Intergenic Intergenic -133429 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 290.25-6 chr11 127439304 127439920 + 1 NA Intergenic Intergenic 168542 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 212.25-39 chr6 47482585 47482983 + 1 NA intron (NM_012120, intron 1 of 17) intron (NM_012120, intron 1 of 17) 4995 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 168.25-62 chr5 144083508 144083695 + 1 NA Intergenic Intergenic 87058 NM_030799 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 219.75-21 chr2 108569448 108569860 + 1 NA intron (NM_001193483, intron 1 of 9) AluJr4|SINE|Alu -18652 NM_001193488 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 187.75-47 chr3 80194629 80194981 + 1 NA Intergenic Intergenic -426807 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 191.25-56 chr5 126146465 126146770 + 1 NA Intergenic Intergenic -32960 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 228.75-14 chr20 47471054 47471496 + 1 NA Intergenic AluSx|SINE|Alu -30612 NM_001174087 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 199.5-54 chrX 33791449 33791749 + 1 NA Intergenic L1MA1|LINE|L1 340731 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 263.25-7 chr14 53648132 53648676 + 1 NA Intergenic L1M4c|LINE|L1 300080 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 278.5-7 chr21 30892152 30892692 + 1 NA Intergenic MER44A|DNA|TcMar-Tigger -10842 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 278.25-3 chr12 43380512 43381090 + 1 NA intron (NM_025003, intron 31 of 38) L1MB7|LINE|L1 171402 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 360.25-2 chr4 78390759 78391382 + 1 NA intron (NM_001166133, intron 29 of 41) intron (NM_001166133, intron 29 of 41) 102085 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 200.75-22 chr17 64335904 64336387 + 1 NA intron (NM_000442, intron 14 of 15) AluSx1|SINE|Alu 54715 NM_000442 5175 Hs.376675 NM_000442 ENSG00000261371 PECAM1 CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM platelet and endothelial cell adhesion molecule 1 protein-coding 351.75-8 chr7 127834513 127835189 + 1 NA intron (NM_014390, intron 11 of 23) intron (NM_014390, intron 11 of 23) -162658 NR_027330 27099 Hs.657377 NM_014411 ENSG00000279078 SND1-IT1 C7orf54|NAG8|NSG-X SND1 intronic transcript 1 ncRNA 164.25-77 chr6 123412818 123413099 + 1 NA intron (NM_001251987, intron 12 of 20) intron (NM_001251987, intron 12 of 20) -26646 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 182.5-17 chr14 53814489 53814882 + 1 NA Intergenic Intergenic 133799 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 212.75-5 chr12 85103398 85103720 + 1 NA intron (NM_001079910, intron 13 of 26) intron (NM_001079910, intron 13 of 26) 67208 NM_001079910 84125 Hs.402200 NM_032165 ENSG00000133640 LRRIQ1 - leucine rich repeats and IQ motif containing 1 protein-coding 248.5-20 chr5 104312971 104313331 + 1 NA Intergenic Intergenic -750362 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 271.5-6 chr16 61504412 61504780 + 1 NA Intergenic Intergenic -448830 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 158.75-12 chr12 4702436 4702785 + 1 NA intron (NR_110112, intron 3 of 3) L1M5|LINE|L1 17492 NR_110112 101929549 Hs.663336 NR_110112 ENSG00000255474 GAU1 GALNT8-DT GALNT8 antisense upstream 1 ncRNA 201.75-17 chr18 1659211 1659592 + 1 NA Intergenic L2b|LINE|L2 -299772 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 287.5-5 chr11 105763035 105763499 + 1 NA intron (NR_046356, intron 3 of 16) L2c|LINE|L2 152561 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 167.5-57 chr3 103373619 103374010 + 1 NA Intergenic Intergenic 150302 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 289.75 chr1 160496018 160496525 + 1 NA exon (NM_052931, exon 2 of 8) exon (NM_052931, exon 2 of 8) 26984 NM_001184716 114836 Hs.492348 NM_052931 ENSG00000162739 SLAMF6 CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000 SLAM family member 6 protein-coding 174.75-24 chr15 95329832 95330111 + 1 NA Intergenic Intergenic -2871 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 169.25-59 chr8 129756623 129756839 + 1 NA intron (NM_031415, intron 6 of 13) L1MA2|LINE|L1 29893 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 185.25-8 chr10 27043082 27043278 + 1 NA intron (NM_014915, intron 20 of 33) L1M5|LINE|L1 57318 NM_001256053 22852 Hs.361041 NM_014915 ENSG00000107890 ANKRD26 THC2|bA145E8.1 ankyrin repeat domain 26 protein-coding 185.25-69 chr5 116016767 116016975 + 1 NA intron (NM_173800, intron 18 of 19) intron (NM_173800, intron 18 of 19) -34595 NM_001195581 644100 Hs.98288 NM_001195581 ENSG00000268223 ARL14EPL - ADP ribosylation factor like GTPase 14 effector protein like protein-coding 387.5 chr14 42537818 42538220 + 1 NA Intergenic Intergenic 931163 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 238.5-14 chr12 121586833 121587279 + 1 NA Intergenic AluSz|SINE|Alu -6033 NM_032590 84678 Hs.524800 NM_032590 ENSG00000089094 KDM2B CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2 lysine demethylase 2B protein-coding 185.25-2 chr1 28035248 28035525 + 1 NA intron (NM_001282562, intron 5 of 16) intron (NM_001282562, intron 5 of 16) 53224 NM_001282560 2140 Hs.185774 NM_001990 ENSG00000158161 EYA3 - EYA transcriptional coactivator and phosphatase 3 protein-coding 263.75-10 chr19 27966224 27966537 + 1 NA intron (NR_146734, intron 5 of 7) intron (NR_146734, intron 5 of 7) -172440 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 245.5-6 chr1 208891291 208891587 + 1 NA Intergenic Intergenic -81015 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 454.25 chr2 41412325 41413275 + 1 NA Intergenic Intergenic -464755 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 181.5-32 chr18 73544300 73544623 + 1 NA Intergenic Intergenic 219520 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 244.25 chr1 108330687 108331066 + 1 NA Intergenic Intergenic -86795 NM_001143989 148545 Hs.511849 NM_152488 ENSG00000196427 NBPF4 - NBPF member 4 protein-coding 307.75-3 chr2 127666545 127667015 + 1 NA intron (NM_001161404, intron 1 of 9) THE1D|LTR|ERVL-MaLR -2187 NM_017980 55679 Hs.469881 NM_017980 ENSG00000072163 LIMS2 LGMD2W|MDRCMTT|PINCH-2|PINCH2 LIM zinc finger domain containing 2 protein-coding 317.25-7 chr7 122741099 122741628 + 1 NA intron (NM_001167940, intron 1 of 29) intron (NM_001167940, intron 1 of 29) -38441 NM_198085 378925 Hs.675191 NM_198085 ENSG00000235631 RNF148 - ring finger protein 148 protein-coding 220.75-6 chr12 33803908 33804290 + 1 NA Intergenic L1PA13|LINE|L1 -218397 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 173.75-46 chr3 181013593 181013945 + 1 NA Intergenic L1MEg|LINE|L1 -23995 NR_033721 131118 Hs.230601 NM_145261 ENSG00000205981 DNAJC19 PAM18|TIM14|TIMM14 DnaJ heat shock protein family (Hsp40) member C19 protein-coding 296.5-4 chr11 19481283 19481648 + 1 NA intron (NM_001111018, intron 1 of 37) MIRb|SINE|MIR 25764 NR_049725 100874012 Hs.434602 NR_049725 ENSG00000255043 NAV2-AS5 - NAV2 antisense RNA 5 ncRNA 195.5-28 chr2 84052552 84052946 + 1 NA Intergenic Intergenic -237933 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 174.5-34 chr18 2403960 2404265 + 1 NA Intergenic HAL1|LINE|L1 167393 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 219.75-41 chr7 91426496 91426760 + 1 NA Intergenic Intergenic 162195 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 214.5-24 chr2 200998992 200999314 + 1 NA intron (NM_001321619, intron 7 of 11) intron (NM_001321619, intron 7 of 11) -35493 NM_006190 4999 Hs.444870 NM_006190 ENSG00000115942 ORC2 ORC2L origin recognition complex subunit 2 protein-coding 191.25-15 chr11 29940225 29940625 + 1 NA Intergenic Intergenic 41968 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 162.25-20 chr14 53765799 53766069 + 1 NA Intergenic Intergenic 182550 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 165.75-67 chr3 156049689 156049953 + 1 NA Intergenic LTR33|LTR|ERVL -70727 NM_172160 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 250.25-5 chr11 73469532 73470083 + 1 NA intron (NM_001286051, intron 1 of 5) L3|LINE|CR1 93139 NM_032871 84957 Hs.533720 NM_032871 ENSG00000054967 RELT AI3C|TNFRSF19L|TRLT RELT TNF receptor protein-coding 199.25-11 chr12 116931209 116931682 + 1 NA intron (NM_153348, intron 2 of 10) L1MA8|LINE|L1 20489 NM_012174 26259 Hs.624537 NM_012174 ENSG00000174989 FBXW8 FBW6|FBW8|FBX29|FBXO29|FBXW6 F-box and WD repeat domain containing 8 protein-coding 259.75-10 chr14 70850541 70850898 + 1 NA Intergenic Intergenic -41206 NM_033141 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 171.25 chr1 53967242 53967449 + 1 NA intron (NM_001256409, intron 8 of 8) MIRb|SINE|MIR 20995 NM_052940 115353 Hs.40094 NM_052940 ENSG00000116212 LRRC42 dJ167A19.4 leucine rich repeat containing 42 protein-coding 155.5-67 chr3 152702422 152702661 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -132590 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 199.5-24 chr2 50393566 50393789 + 1 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -45921 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 238.5-29 chr4 181790478 181790832 + 1 NA Intergenic Intergenic 39318 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 198.5-9 chr10 107748909 107749284 + 1 NA Intergenic L1ME1|LINE|L1 320197 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 454.75-2 chr8 130589434 130590129 + 1 NA Intergenic L1ME4a|LINE|L1 -146107 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 176.5-8 chr10 74587924 74588190 + 1 NA intron (NM_001369123, intron 7 of 9) L1MC5a|LINE|L1 -58733 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 191.5-30 chr2 142025677 142025991 + 1 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 105867 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 266.5-4 chr10 89172637 89173119 + 1 NA Intergenic Intergenic 34439 NM_003956 9023 Hs.47357 NM_003956 ENSG00000138135 CH25H C25H cholesterol 25-hydroxylase protein-coding 151.5-40 chr17 71104485 71104651 + 1 NA intron (NR_104152, intron 3 of 3) intron (NR_104152, intron 3 of 3) 97611 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 200.5-25 chr17 73568500 73568812 + 1 NA intron (NM_001144952, intron 1 of 44) L1MEb|LINE|L1 54973 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 386.25 chr1 85173343 85174100 + 1 NA intron (NM_032184, intron 4 of 6) L1MEc|LINE|L1 27295 NM_032184 84144 Hs.533853 NM_032184 ENSG00000097096 SYDE2 - synapse defective Rho GTPase homolog 2 protein-coding 270.75-12 chr2 32712898 32713222 + 1 NA intron (NM_017735, intron 10 of 19) MSTD|LTR|ERVL-MaLR 77805 NR_039922 100616219 NR_039922 ENSG00000265057 MIR4765 - microRNA 4765 ncRNA 260.75-9 chr14 46917144 46917504 + 1 NA intron (NM_001113498, intron 10 of 16) intron (NM_001113498, intron 10 of 16) -265543 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 306.25-5 chr11 41335323 41335876 + 1 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 124037 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 252.25-10 chr2 49700087 49700534 + 1 NA Intergenic Intergenic 273893 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 261.75-9 chr2 178815430 178815880 + 1 NA Intergenic MER2|DNA|TcMar-Tigger -8232 NM_133432 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 321.75-4 chr4 117362955 117363343 + 1 NA intron (NR_147153, intron 2 of 4) intron (NR_147153, intron 2 of 4) 2497 NR_147153 105377390 Hs.368206 NR_147152 ENSG00000228358 LINC02263 - long intergenic non-protein coding RNA 2263 ncRNA 331.5-10 chr8 126624487 126624975 + 1 NA Intergenic Intergenic -66253 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 307.5-3 chr2 20256707 20257221 + 1 NA intron (NM_001282790, intron 14 of 18) AluSx|SINE|Alu -31531 NM_001006946 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 334.75-7 chr21 18414446 18414981 + 1 NA Intergenic L1MA10|LINE|L1 -10928 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 172.75-61 chr6 141245422 141245756 + 1 NA Intergenic L2c|LINE|L2 561775 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 204.25-38 chr4 83104084 83104427 + 1 NA intron (NM_001130716, intron 3 of 4) Tigger1|DNA|TcMar-Tigger 5634 NM_001130716 51316 Hs.546392 NM_016619 ENSG00000145287 PLAC8 C15|DGIC|PNAS-144|onzin placenta associated 8 protein-coding 147.25-83 chr6 63016384 63016583 + 1 NA Intergenic AluSx1|SINE|Alu 303494 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 234.5-10 chr16 55658934 55659388 + 1 NA intron (NM_001172504, intron 1 of 13) intron (NM_001172504, intron 1 of 13) 2517 NM_001172504 6530 Hs.78036 NM_001043 ENSG00000103546 SLC6A2 NAT1|NET|NET1|SLC6A5 solute carrier family 6 member 2 protein-coding 178.25-56 chr5 98834308 98834578 + 1 NA Intergenic Intergenic 60780 NM_001366508 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 189.25-10 chr11 5845963 5846269 + 1 NA Intergenic Intergenic -4219 NM_001005167 390078 NM_001005167 ENSG00000205409 OR52E6 OR11-58 olfactory receptor family 52 subfamily E member 6 protein-coding 261.25-3 chr14 66991020 66991409 + 1 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -198226 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 196.5-46 chr6 43611685 43611944 + 1 NA intron (NM_001291970, intron 10 of 10) AluSq2|SINE|Alu 15539 NM_001286216 54676 Hs.485449 NM_019096 ENSG00000172432 GTPBP2 JABELS GTP binding protein 2 protein-coding 315.75-4 chr6 119873693 119874571 + 1 NA Intergenic Intergenic -141047 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 176.5-40 chr2 129597834 129598081 + 1 NA Intergenic Intergenic 279534 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 207.5-12 chr13 37076255 37076612 + 1 NA Intergenic L1MB7|LINE|L1 -16720 NM_017569 55578 Hs.435815 NM_017569 ENSG00000102710 SUPT20H C13|C13orf19|FAM48A|FP757|P38IP|SPT20 SPT20 homolog, SAGA complex component protein-coding 242.5-18 chr20 16374565 16374817 + 1 NA intron (NM_001199866, intron 19 of 22) intron (NM_001199866, intron 19 of 22) 198757 NM_001199866 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 279.25-12 chr2 184902735 184903295 + 1 NA intron (NM_194250, intron 2 of 3) intron (NM_194250, intron 2 of 3) 264057 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 189.75-27 chr15 66300418 66300747 + 1 NA intron (NM_001323948, intron 2 of 15) intron (NM_001323948, intron 2 of 15) 6767 NM_001323941 115752 Hs.446251 NM_133375 ENSG00000166938 DIS3L DIS3L1 DIS3 like exosome 3'-5' exoribonuclease protein-coding 219.25-27 chr20 7781324 7781641 + 1 NA Intergenic L1MD1|LINE|L1 158976 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 300.25-8 chr21 22696070 22696663 + 1 NA Intergenic L1MA4|LINE|L1 -382918 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 217.5-23 chr2 70233202 70233473 + 1 NA intron (NR_147232, intron 1 of 10) intron (NR_147232, intron 1 of 10) 15291 NM_001351522 7072 Hs.413123 NM_022037 ENSG00000116001 TIA1 TIA-1|WDM TIA1 cytotoxic granule associated RNA binding protein protein-coding 339.5-5 chr2 96506762 96507180 + 1 NA intron (NR_104346, intron 1 of 3) intron (NR_104346, intron 1 of 3) 1138 NR_104346 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 184.5-19 chr11 77456241 77456517 + 1 NA intron (NM_001128620, intron 1 of 15) intron (NM_001128620, intron 1 of 15) 17684 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 166.25-63 chr7 26813718 26813966 + 1 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 43881 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 223.25-24 chr5 8401864 8402186 + 1 NA intron (NR_039984, intron 2 of 5) intron (NR_039984, intron 2 of 5) 55539 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 241.75-16 chr4 61435770 61436145 + 1 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 233785 NM_001371342 338.5-6 chr6 66775330 66776119 + 1 NA Intergenic L1PREC2|LINE|L1 987845 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 391.25 chr12 26503682 26504330 + 1 NA intron (NM_002223, intron 37 of 56) intron (NM_002223, intron 37 of 56) 308433 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 302.75-2 chr2 10738488 10739027 + 1 NA intron (NM_001039362, intron 3 of 13) L2|LINE|L2 17127 NM_144583 245973 Hs.580464 NM_144583 ENSG00000143882 ATP6V1C2 ATP6C2|VMA5 ATPase H+ transporting V1 subunit C2 protein-coding 339.25-5 chr2 109327656 109328169 + 1 NA intron (NM_001099289, intron 1 of 9) L1MC5a|LINE|L1 -14287 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 213.75-34 chr6 95196588 95196836 + 1 NA Intergenic Intergenic 380739 NR_104136 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 207.25-36 chr21 28136857 28137159 + 1 NA non-coding (NR_126010, exon 5 of 5) non-coding (NR_126010, exon 5 of 5) 46605 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 269.5-11 chr2 37332190 37332664 + 1 NA Intergenic L2|LINE|L2 -12203 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 180.5-26 chr16 62004592 62004860 + 1 NA intron (NM_001796, intron 2 of 11) intron (NM_001796, intron 2 of 11) 31712 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 281.25-5 chr14 60460417 60460807 + 1 NA intron (NM_174978, intron 13 of 17) (AT)n|Simple_repeat|Simple_repeat 25451 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 329.5-8 chr9 31805480 31806014 + 1 NA Intergenic L1M5|LINE|L1 -424257 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 183.75-21 chr11 133755296 133755612 + 1 NA Intergenic Intergenic 54922 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 239.25-24 chr5 126318488 126318962 + 1 NA Intergenic Intergenic -33550 NR_105040 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 218.5-30 chr4 119190846 119191080 + 1 NA Intergenic Intergenic -21664 NM_019050 54532 Hs.431081 NM_019050 ENSG00000145390 USP53 - ubiquitin specific peptidase 53 protein-coding 191.75-16 chr11 95841188 95841564 + 1 NA intron (NM_001243571, intron 15 of 17) intron (NM_001243571, intron 15 of 17) 50878 NM_014679 9702 Hs.101014 NM_014679 ENSG00000166037 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57 protein-coding 207.75-50 chr8 106895489 106895763 + 1 NA Intergenic Intergenic -125382 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 376.5-3 chr22 41217638 41218496 + 1 NA promoter-TSS (NR_148200) promoter-TSS (NR_148200) -440 NR_148200 100506544 Hs.627409 NR_148200 ENSG00000235513 LOC100506544 - uncharacterized LOC100506544 ncRNA 168.5-17 chr12 10471959 10472251 + 1 NA Intergenic L1MA8|LINE|L1 -17420 NM_001304448 3821 Hs.512576 NM_002259 ENSG00000134545 KLRC1 CD159A|NKG2|NKG2A killer cell lectin like receptor C1 protein-coding 156.5-38 chr15 88983268 88983464 + 1 NA Intergenic MIR|SINE|MIR -69987 NM_001310319 4240 Hs.3745 NM_005928 ENSG00000140545 MFGE8 BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 milk fat globule-EGF factor 8 protein protein-coding 213.25-12 chr14 61050984 61051501 + 1 NA intron (NR_033344, intron 13 of 16) intron (NR_033344, intron 13 of 16) -69552 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 243.5-28 chr9 119092956 119093508 + 1 NA Intergenic Intergenic 276203 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 312.5 chr1 58659479 58660014 + 1 NA 3' UTR (NM_001085487, exon 20 of 20) 3' UTR (NM_001085487, exon 20 of 20) 40316 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB|BMFS4 Myb like, SWIRM and MPN domains 1 protein-coding 361.25-9 chr9 31723596 31724109 + 1 NA Intergenic LTR101_Mam|LTR|ERVL -342362 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 214.75-16 chr11 28537805 28538257 + 1 NA Intergenic L1M5|LINE|L1 -60483 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 282.5-3 chr11 5132067 5132461 + 1 NA exon (NM_001005160, exon 1 of 1) exon (NM_001005160, exon 1 of 1) 378 NM_001005160 390054 Hs.546593 NM_001005160 ENSG00000171944 OR52A5 OR11-33 olfactory receptor family 52 subfamily A member 5 protein-coding 249.75-5 chr14 66118451 66118706 + 1 NA Intergenic (ATATT)n|Simple_repeat|Simple_repeat -367793 NR_110307 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 252.25-9 chr2 41278497 41278986 + 1 NA Intergenic L1ME1|LINE|L1 -598814 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 301.5-3 chr14 67615997 67616527 + 1 NA Intergenic Intergenic -3658 NM_001172 384 Hs.226007 NM_001172 ENSG00000081181 ARG2 - arginase 2 protein-coding 179.5-23 chr14 83004273 83004653 + 1 NA Intergenic THE1D|LTR|ERVL-MaLR 361831 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 214.75-51 chr9 95520356 95520915 + 1 NA Intergenic Intergenic -3578 NM_001354919 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 270.5-16 chr5 87504269 87504633 + 1 NA Intergenic Intergenic -91418 NM_001363539 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 196.75-32 chr3 34223026 34223455 + 1 NA Intergenic Intergenic 424610 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 342.75-3 chr8 86622480 86622968 + 1 NA intron (NM_019098, intron 13 of 17) intron (NM_019098, intron 13 of 17) 108289 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 224.5-39 chr9 3633468 3633875 + 1 NA Intergenic L1MC5a|LINE|L1 -34415 NR_121586 101929302 Hs.122828 NR_121586 ENSG00000232104 RFX3-AS1 CVAT7 RFX3 antisense RNA 1 ncRNA 273.25-19 chr8 120242823 120243398 + 1 NA intron (NM_021110, intron 19 of 47) intron (NM_021110, intron 19 of 47) 118008 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 167.25-87 chr9 135006031 135006271 + 1 NA Intergenic MER2|DNA|TcMar-Tigger -69354 NM_006334 10439 Hs.522484 NM_006334 ENSG00000130558 OLFM1 AMY|NOE1|NOELIN1|OlfA olfactomedin 1 protein-coding 211.25-47 chrX 29001144 29001429 + 1 NA intron (NM_014271, intron 2 of 10) intron (NM_014271, intron 2 of 10) 413840 NM_014271 11141 Hs.658912 NM_014271 ENSG00000169306 IL1RAPL1 IL-1-RAPL-1|IL-1RAPL-1|IL1R8|IL1RAPL|IL1RAPL-1|MRX10|MRX21|MRX34|OPHN4|TIGIRR-2 interleukin 1 receptor accessory protein like 1 protein-coding 251.5-27 chr6 69501317 69501770 + 1 NA Intergenic L1M1|LINE|L1 294923 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 215.25-8 chr10 83072183 83072665 + 1 NA Intergenic L1M4|LINE|L1 604665 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 329.5-3 chr13 78274690 78275096 + 1 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) 220038 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 158.75-53 chr3 139851285 139851552 + 1 NA Intergenic L1PA16|LINE|L1 -83767 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 284.5-13 chr7 91166848 91167196 + 1 NA intron (NM_012395, intron 13 of 13) intron (NM_012395, intron 13 of 13) -97411 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 250.75-13 chr18 61079274 61079649 + 1 NA Intergenic Intergenic -253969 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 147.75-109 chr8 59854417 59854593 + 1 NA Intergenic Tigger2|DNA|TcMar-Tigger 426895 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 257.75-18 chr4 67755381 67756095 + 1 NA 5' UTR (NM_000406, exon 1 of 3) 5' UTR (NM_000406, exon 1 of 3) 348 NM_001012763 2798 Hs.407587 NM_000406 ENSG00000109163 GNRHR GNRHR1|GRHR|HH7|LHRHR|LRHR gonadotropin releasing hormone receptor protein-coding 202.75-20 chr17 58840360 58840750 + 1 NA intron (NM_014906, intron 1 of 6) L1MC3|LINE|L1 84686 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 241.25-23 chr5 120662253 120662512 + 1 NA intron (NM_001308088, intron 3 of 3) HAL1b|LINE|L1 130918 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 166.5-39 chr2 67924685 67924948 + 1 NA Intergenic L1M4|LINE|L1 -99254 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 265.5-13 chr2 175754977 175755454 + 1 NA Intergenic Intergenic 247052 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 230.75-20 chr2 33666649 33666922 + 1 NA Intergenic LTR27C|LTR|ERV1 -40101 NR_126403 104355287 Hs.636582 NR_126403 ENSG00000228262 LINC01317 - long intergenic non-protein coding RNA 1317 ncRNA 359.25-2 chr11 124240333 124240845 + 1 NA Intergenic Intergenic -9087 NM_001002905 26494 Hs.448172 NM_001002905 ENSG00000197849 OR8G1 HSTPCR25|OR8G1P|TPCR25 olfactory receptor family 8 subfamily G member 1 (gene/pseudogene) protein-coding 192.75-54 chr5 125671497 125671749 + 1 NA Intergenic Intergenic 178362 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 272.25-18 chr7 82588094 82588434 + 1 NA Intergenic L1M2|LINE|L1 -144308 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 232.25-18 chr18 66179199 66179641 + 1 NA Intergenic L1MEf|LINE|L1 424670 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 166.25-41 chr3 33296854 33297092 + 1 NA intron (NM_012157, intron 1 of 14) L1MB7|LINE|L1 19531 NM_001349320 25827 Hs.475872 NM_012157 ENSG00000153558 FBXL2 FBL2|FBL3 F-box and leucine rich repeat protein 2 protein-coding 191.75-55 chr6 55939930 55940315 + 1 NA Intergenic (TCA)n|Simple_repeat|Simple_repeat -64532 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 204.25-36 chr4 63004758 63005025 + 1 NA Intergenic L2|LINE|L2 -843126 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 158.5-8 chr10 73860983 73861167 + 1 NA intron (NR_160045, intron 1 of 17) AluJr|SINE|Alu 13480 NR_160040 818 Hs.523045 NM_001222 ENSG00000148660 CAMK2G CAMK|CAMK-II|CAMKG calcium/calmodulin dependent protein kinase II gamma protein-coding 282.75-7 chr4 76300105 76300631 + 1 NA intron (NM_001242939, intron 6 of 6) MER5A1|DNA|hAT-Charlie -5658 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 366.25-7 chr3 31457601 31458590 + 1 NA Intergenic L1PB4|LINE|L1 -74830 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 205.5-19 chr2 23449115 23449408 + 1 NA intron (NM_052920, intron 1 of 13) intron (NM_052920, intron 1 of 13) 64082 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 196.25-49 chr6 122601458 122601834 + 1 NA intron (NM_181794, intron 3 of 6) Tigger2a|DNA|TcMar-Tigger -8586 NM_032471 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 224.5-16 chr18 7851928 7852225 + 1 NA intron (NM_002845, intron 2 of 30) L1MEg|LINE|L1 284760 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 229.5-31 chr5 173991115 173991528 + 1 NA intron (NM_001144954, intron 1 of 4) L1MB8|LINE|L1 2151 NM_001144954 133491 Hs.131469 NM_001144954 ENSG00000185056 C5orf47 - chromosome 5 open reading frame 47 protein-coding 193.25-29 chr2 85109456 85109649 + 1 NA Intergenic AluSx1|SINE|Alu -23840 NM_031283 83439 Hs.516297 NM_031283 ENSG00000152284 TCF7L1 TCF-3|TCF3 transcription factor 7 like 1 protein-coding 335.5-3 chr2 38048493 38048958 + 1 NA intron (NM_144713, intron 10 of 10) intron (NM_144713, intron 10 of 10) -12384 NR_102712 101410544 Hs.591566 NR_102712 RMDN2-AS1 - RMDN2 antisense RNA 1 ncRNA 337.5 chr1 103091082 103091533 + 1 NA intron (NM_001854, intron 1 of 66) intron (NM_001854, intron 1 of 66) 17189 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 205.5-7 chr10 112172293 112172652 + 1 NA intron (NM_001244949, intron 8 of 21) intron (NM_001244949, intron 8 of 21) 11293 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 339.5 chr1 68063353 68064023 + 1 NA intron (NR_040077, intron 2 of 9) L1PA13|LINE|L1 -12057 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 202.25-59 chr8 132022055 132022323 + 1 NA Intergenic LTR40a|LTR|ERVL 37193 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 180.5-32 chr18 70909710 70910004 + 1 NA Intergenic MER110|LTR|ERV1 -258903 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 232.5-28 chr22 39797979 39798449 + 1 NA intron (NM_152512, intron 5 of 6) L1M2|LINE|L1 95546 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 260.5-4 chr12 9021853 9022223 + 1 NA Intergenic AluJr|SINE|Alu 32413 NR_137428 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 183.75-45 chr2 76275335 76275795 + 1 NA Intergenic Intergenic -564650 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 331.25-9 chr9 23625092 23625524 + 1 NA intron (NR_121602, intron 9 of 27) L3b|LINE|CR1 47091 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 201.5-27 chr2 143427330 143427668 + 1 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 298080 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 295.25 chr10 19800432 19801127 + 1 NA Intergenic Intergenic -15653 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 257.5-16 chr3 59827153 59827556 + 1 NA intron (NM_001354590, intron 7 of 8) intron (NM_001354590, intron 7 of 8) -168857 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 266.25-12 chr4 136564226 136564642 + 1 NA Intergenic Intergenic -629322 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 195.25-54 chr8 34771300 34771682 + 1 NA Intergenic L2c|LINE|L2 -12430 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 222.75-26 chr3 144748416 144748900 + 1 NA Intergenic L3|LINE|CR1 775577 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 174.5-5 chr1 89091357 89091682 + 1 NA Intergenic L1MA7|LINE|L1 -26311 NM_002053 2633 Hs.62661 NM_002053 ENSG00000117228 GBP1 - guanylate binding protein 1 protein-coding 158.25-32 chr12 125290110 125290287 + 1 NA intron (NM_001366854, intron 1 of 8) intron (NM_001366854, intron 1 of 8) -36418 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 152.75-70 chr4 173771251 173771462 + 1 NA Intergenic L2a|LINE|L2 -125917 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 196.5-49 chr6 155773060 155773324 + 1 NA Intergenic L1PA8|LINE|L1 -173605 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 195.5-30 chr2 154522552 154522824 + 1 NA Intergenic L1MA2|LINE|L1 -65250 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 176.5-26 chr15 101670343 101670683 + 1 NA intron (NM_152334, intron 15 of 18) L1ME1|LINE|L1 -18122 NM_001307960 80213 Hs.288912 NM_025141 ENSG00000184277 TM2D3 BLP2 TM2 domain containing 3 protein-coding 291.25 chr1 221612944 221613450 + 1 NA Intergenic Intergenic 123703 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 238.75-2 chr1 71769883 71770162 + 1 NA intron (NM_173808, intron 3 of 6) intron (NM_173808, intron 3 of 6) 66990 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 220.25-13 chr15 33087710 33088154 + 1 NA intron (NM_001277313, intron 5 of 20) L1PB1|LINE|L1 -19758 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 156.25-72 chr5 78837533 78837789 + 1 NA intron (NM_198709, intron 7 of 7) MER33|DNA|hAT-Charlie 147649 NM_000046 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 231.25-18 chr14 96855106 96855372 + 1 NA exon (NM_003384, exon 8 of 13) exon (NM_003384, exon 8 of 13) 57857 NM_003384 7443 Hs.422662 NM_003384 ENSG00000100749 VRK1 PCH1|PCH1A VRK serine/threonine kinase 1 protein-coding 339.5-4 chr15 82142992 82143445 + 1 NA intron (NM_001040610, intron 16 of 17) L1ME4c|LINE|L1 54624 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 251.75-19 chr3 112100481 112101094 + 1 NA intron (NM_024616, intron 2 of 5) L1M5|LINE|L1 -12014 NR_030292 693152 NR_030292 ENSG00000207940 MIR567 MIRN567|hsa-mir-567 microRNA 567 ncRNA 482.25 chr14 87272925 87274092 + 1 NA Intergenic Intergenic 367730 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 186.5-35 chr20 51012408 51012806 + 1 NA intron (NM_002237, intron 1 of 2) intron (NM_002237, intron 1 of 2) 10500 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 347.5-7 chr3 111492832 111493182 + 1 NA Intergenic L1PA15-16|LINE|L1 -49190 NM_005816 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 194.25-31 chr4 36264867 36265229 + 1 NA intron (NR_122080, intron 2 of 2) MIRb|SINE|MIR 8530 NR_122080 439933 Hs.591071 NR_122079 ENSG00000247193 LOC439933 - uncharacterized LOC439933 ncRNA 160.75-16 chr11 42862358 42862613 + 1 NA Intergenic L1ME2|LINE|L1 406884 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 222.5-48 chr7 43595899 43596164 + 1 NA exon (NM_004760, exon 2 of 7) exon (NM_004760, exon 2 of 7) 12923 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 209.25-39 chr6 49135562 49136149 + 1 NA Intergenic Intergenic 327398 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 174.25-36 chr20 51586906 51587174 + 1 NA Intergenic L1M5|LINE|L1 -24201 NM_001258292 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 275.75-10 chr3 102245853 102246454 + 1 NA Intergenic AluSp|SINE|Alu 82448 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 148.5-82 chr5 149518330 149518562 + 1 NA intron (NM_001271742, intron 3 of 9) intron (NM_001271742, intron 3 of 9) 31919 NM_001271742 1452 Hs.529862 NM_001892 ENSG00000113712 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1 alpha 1 protein-coding 217.75 chr1 69611828 69612072 + 1 NA intron (NM_001366842, intron 1 of 7) Tigger17a|DNA|TcMar-Tigger 42609 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 240.5-23 chr5 67457883 67458294 + 1 NA Intergenic Intergenic 188701 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 210.5-2 chr1 191983743 191984024 + 1 NA Intergenic L1MA4A|LINE|L1 -174579 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 220.75-9 chr14 68043676 68044013 + 1 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 220252 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 285.75-10 chr8 88851613 88851978 + 1 NA Intergenic L1ME2|LINE|L1 -524312 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 303.5 chr1 29062196 29062690 + 1 NA intron (NM_004437, intron 14 of 18) intron (NM_004437, intron 14 of 18) 60058 NM_001171868 399474 Hs.712722 NM_001003682 ENSG00000253304 TMEM200B TTMB transmembrane protein 200B protein-coding 193.5-58 chr5 28040579 28040836 + 1 NA Intergenic Intergenic 246958 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 185.75-71 chr6 118741312 118741550 + 1 NA Intergenic L1M5|LINE|L1 -31356 NM_001178035 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 171.75-63 chr5 93504035 93504501 + 1 NA intron (NR_109825, intron 5 of 8) intron (NR_109825, intron 5 of 8) 67075 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 278.5-8 chr22 41779143 41779580 + 1 NA intron (NM_152513, intron 22 of 30) AluJb|SINE|Alu -21261 NM_001304797 79879 Hs.474991 NM_024821 ENSG00000100147 CCDC134 - coiled-coil domain containing 134 protein-coding 163.5-3 chr1 46613965 46614174 + 1 NA intron (NM_201403, intron 1 of 3) intron (NM_201403, intron 1 of 3) 1064 NM_145279 148932 Hs.632401 NM_145279 ENSG00000142961 MOB3C MOB1E|MOBKL2C MOB kinase activator 3C protein-coding 230.75-50 chr9 102691024 102691514 + 1 NA Intergenic MLT1B|LTR|ERVL-MaLR 171632 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 331.5-8 chr6 141725293 141725660 + 1 NA Intergenic L1M3|LINE|L1 363323 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 326.5-2 chr4 60582745 60583573 + 1 NA Intergenic Intergenic -339460 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 226.25-11 chr18 8300873 8301293 + 1 NA intron (NM_002845, intron 18 of 30) intron (NM_002845, intron 18 of 30) 65951 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 172.5-2 chr1 64771762 64772246 + 1 NA intron (NM_001366165, intron 2 of 11) intron (NM_001366165, intron 2 of 11) 26929 NM_018211 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 209.5-41 chr5 92949507 92949921 + 1 NA Intergenic L1MA4A|LINE|L1 621629 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 330.75-2 chr11 74755523 74756303 + 1 NA intron (NM_001098638, intron 1 of 5) L2c|LINE|L2 7064 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 166.5-72 chr6 39328008 39328226 + 1 NA Intergenic Intergenic -5149 NM_001363784 83795 Hs.287765 NM_032115 ENSG00000095981 KCNK16 K2p16.1|TALK-1|TALK1 potassium two pore domain channel subfamily K member 16 protein-coding 273.25-13 chr3 83462284 83462797 + 1 NA Intergenic Intergenic 1407035 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 335.5-7 chr6 131621806 131622230 + 1 NA intron (NM_015979, intron 5 of 30) intron (NM_015979, intron 5 of 30) 6224 NM_015979 9439 Hs.29679 NM_004830 ENSG00000112282 MED23 ARC130|CRSP130|CRSP133|CRSP3|DRIP130|MRT18|SUR-2|SUR2 mediator complex subunit 23 protein-coding 234.25-19 chr7 13430760 13431233 + 1 NA Intergenic Intergenic 555518 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 187.5-73 chr9 38662351 38662543 + 1 NA Intergenic Intergenic 41359 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 198.5-36 chr3 23212120 23212342 + 1 NA intron (NM_001370228, intron 2 of 3) intron (NM_001370228, intron 2 of 3) 8904 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 226.5-13 chr17 51818212 51818527 + 1 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 340345 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 277.75-13 chr5 39301544 39301990 + 1 NA intron (NM_001737, intron 9 of 10) L1M5|LINE|L1 -31118 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 166.75-17 chr12 6473878 6474235 + 1 NA Intergenic L1MD2|LINE|L1 -3379 NM_199245 6843 Hs.20021 NM_014231 ENSG00000139190 VAMP1 CMS25|SPAX1|SYB1|VAMP-1 vesicle associated membrane protein 1 protein-coding 292.75-9 chr8 34235502 34235948 + 1 NA Intergenic AluYk3|SINE|Alu -548196 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 249.25-7 chr15 77231424 77231753 + 1 NA intron (NM_024776, intron 4 of 7) intron (NM_024776, intron 4 of 7) -6184 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 419.25 chr22 45047995 45048651 + 1 NA Intergenic AluJb|SINE|Alu -38318 NM_138415 112885 Hs.254097 NM_138415 ENSG00000056487 PHF21B BHC80L|PHF4 PHD finger protein 21B protein-coding 294.5-7 chr6 161652060 161652434 + 1 NA intron (NM_004562, intron 7 of 11) intron (NM_004562, intron 7 of 11) 181270 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 208.5-10 chr11 102951704 102952033 + 1 NA intron (NM_002427, intron 5 of 9) Tigger3a|DNA|TcMar-Tigger 3864 NM_002427 4322 Hs.2936 NM_002427 ENSG00000137745 MMP13 CLG3|MANDP1|MDST|MMP-13 matrix metallopeptidase 13 protein-coding 301.5-11 chr5 115192556 115193050 + 1 NA Intergenic L1MC3|LINE|L1 -12257 NM_001017398 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 225.25-25 chr3 99024706 99025129 + 1 NA Intergenic L3|LINE|CR1 -123222 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 177.5-7 chr1 200468800 200468983 + 1 NA Intergenic Intergenic -58855 NM_001281294 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 224.25-30 chr5 68848813 68849164 + 1 NA Intergenic AluSx|SINE|Alu 180939 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 229.75-8 chr12 86323075 86323580 + 1 NA intron (NM_001351286, intron 4 of 7) intron (NM_001351286, intron 4 of 7) -66028 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 161.5-91 chr9 27967892 27968114 + 1 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -394137 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 279.5-3 chr12 75833211 75833676 + 1 NA Intergenic Intergenic 198333 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 250.5-11 chr16 12412266 12412770 + 1 NA intron (NM_032167, intron 18 of 20) intron (NM_032167, intron 18 of 20) -307803 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 224.5-36 chr8 88669423 88669783 + 1 NA Intergenic L1MC4|LINE|L1 -342120 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 170.5-35 chr2 66616680 66617013 + 1 NA intron (NR_110156, intron 1 of 5) L1M4|LINE|L1 42816 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 247.5-29 chr6 16578101 16578402 + 1 NA intron (NM_000332, intron 5 of 8) intron (NM_000332, intron 5 of 8) 181933 NR_152114 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 207.5-3 chr1 184955053 184955348 + 1 NA intron (NM_052966, intron 1 of 13) MER33|DNA|hAT-Charlie 19308 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 NIBAN1 C1orf24|FAM129A|GIG39|NIBAN niban apoptosis regulator 1 protein-coding 267.75-2 chr11 28297739 28298188 + 1 NA intron (NM_001113528, intron 6 of 6) intron (NM_001113528, intron 6 of 6) 179585 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 327.75-3 chr12 80696786 80697477 + 1 NA Intergenic Intergenic -10503 NM_002469 4618 Hs.35937 NM_002469 ENSG00000111046 MYF6 CNM3|MRF4|bHLHc4|myf-6 myogenic factor 6 protein-coding 236.5-9 chr14 46310065 46310388 + 1 NA intron (NR_102702, intron 3 of 3) MER2|DNA|TcMar-Tigger -161133 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 151.25-67 chr4 42715602 42715879 + 1 NA Intergenic AluSc5|SINE|Alu -58635 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 251.25-25 chr5 58238984 58239459 + 1 NA Intergenic Intergenic -116880 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 174.75-43 chr3 172982131 172982518 + 1 NA intron (NM_031955, intron 4 of 10) intron (NM_031955, intron 4 of 10) 158911 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 236.25-34 chr8 122205909 122206225 + 1 NA Intergenic Intergenic 362577 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 211.25-2 chr1 194329676 194330230 + 1 NA Intergenic A-rich|Low_complexity|Low_complexity 1025208 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 184.5-22 chr11 95916180 95916501 + 1 NA intron (NM_001243571, intron 1 of 17) MLT1J|LTR|ERVL-MaLR 7767 NM_201281 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 274.25-19 chr8 135501570 135501943 + 1 NA intron (NM_006558, intron 1 of 8) intron (NM_006558, intron 1 of 8) 44300 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 416.75 chr1 241190340 241190908 + 1 NA intron (NM_001282778, intron 2 of 16) L1MDa|LINE|L1 58352 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 318.25 chr1 176276067 176276574 + 1 NA Intergenic Intergenic -69034 NM_022457 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 280.5-13 chr8 117795614 117796061 + 1 NA Intergenic Intergenic 125076 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 341.5-6 chr7 10091261 10091687 + 1 NA Intergenic L2b|LINE|L2 457204 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 147.25-94 chr7 112867547 112867808 + 1 NA intron (NM_152556, intron 3 of 4) intron (NM_152556, intron 3 of 4) 72198 NM_152556 154743 Hs.489734 NM_152556 ENSG00000164603 BMT2 C7orf60|SAMTOR base methyltransferase of 25S rRNA 2 homolog protein-coding 156.5-32 chr13 22772456 22772823 + 1 NA Intergenic MIR|SINE|MIR 125542 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 231.25-26 chr3 74368383 74368741 + 1 NA intron (NM_020872, intron 7 of 21) intron (NM_020872, intron 7 of 21) 152578 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 197.5-22 chr16 80491558 80491842 + 1 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -49034 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 249.25-5 chr14 57004441 57004990 + 1 NA Intergenic Intergenic 191557 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 245.5-8 chr10 60580280 60580649 + 1 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -7508 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 182.5-3 chr1 214474069 214474372 + 1 NA intron (NM_005401, intron 1 of 18) Tigger15a|DNA|TcMar-Tigger 77382 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 CATLPH|PEZ|PTP36 protein tyrosine phosphatase non-receptor type 14 protein-coding 198.25-59 chr8 128974919 128975258 + 1 NA Intergenic Intergenic -9087 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 320.5 chr10 107787869 107788232 + 1 NA Intergenic Intergenic 281243 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 201.5-31 chr20 37529012 37529380 + 1 NA Intergenic L2c|LINE|L2 -1265 NM_001167820 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 216.75-8 chr15 97521021 97521389 + 1 NA intron (NR_120324, intron 1 of 4) intron (NR_120324, intron 1 of 4) 606 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 271.75-7 chr17 59048236 59048824 + 1 NA intron (NR_148346, intron 15 of 23) intron (NR_148346, intron 15 of 23) 58350 NM_001353085 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 323.5-9 chr7 40908190 40908827 + 1 NA Intergenic L1M5|LINE|L1 71431 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 211.75-22 chr4 3191298 3191588 + 1 NA intron (NM_002111, intron 40 of 66) AluSp|SINE|Alu -52926 NM_001330620 345222 Hs.442291 NM_001012982 ENSG00000188981 MSANTD1 C4orf44 Myb/SANT DNA binding domain containing 1 protein-coding 189.5-41 chr3 85385550 85385879 + 1 NA promoter-TSS (NR_049870) promoter-TSS (NR_049870) 4 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 215.25-53 chrX 137904067 137904348 + 1 NA Intergenic HAL1|LINE|L1 338080 NM_003413 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 218.5-18 chr2 34174398 34174688 + 1 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 107317 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 212.5-31 chr3 82359354 82359612 + 1 NA intron (NR_147146, intron 3 of 8) intron (NR_147146, intron 3 of 8) 373341 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 245.5-12 chr13 78070984 78071365 + 1 NA intron (NR_047001, intron 1 of 5) intron (NR_047001, intron 1 of 5) 16319 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 261.5-10 chr2 18835506 18835949 + 1 NA Intergenic Intergenic 191244 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 368.25-4 chr7 47201099 47201765 + 1 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR 263371 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 231.5-35 chr7 96633595 96633978 + 1 NA intron (NR_038948, intron 4 of 4) L1MC|LINE|L1 30552 NR_038948 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 164.25-72 chr5 93007521 93007856 + 1 NA Intergenic MER2|DNA|TcMar-Tigger 563655 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 246.25-31 chr5 91980232 91980672 + 1 NA Intergenic Intergenic -597135 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 237.5-32 chr8 83288382 83288798 + 1 NA Intergenic Intergenic -115168 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 398.5 chr18 11558719 11559658 + 1 NA Intergenic Intergenic -50370 NM_001282300 646000 NM_001282300 ENSG00000236396 SLC35G4 AMAC1L1|SLC35G4P solute carrier family 35 member G4 protein-coding 184.5-3 chr1 40750406 40750759 + 1 NA intron (NM_001142588, intron 4 of 10) L1ME2z|LINE|L1 -3773 NR_029846 407034 NR_029846 ENSG00000198974 MIR30E MIRN30E|mir-30e microRNA 30e ncRNA 165.75-95 chr7 125775448 125775644 + 1 NA Intergenic Intergenic -511255 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 270.25-18 chr8 100363547 100364224 + 1 NA Intergenic L1ME4b|LINE|L1 -18878 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 209.25-15 chr17 61725605 61726006 + 1 NA intron (NM_032043, intron 16 of 19) AluJr4|SINE|Alu -134586 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 268.25-25 chr8 116060508 116060994 + 1 NA intron (NR_046215, intron 7 of 13) Mam_R4|LINE|Dong-R4 264308 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 167.5-17 chr11 60320476 60320705 + 1 NA Intergenic L1MA9|LINE|L1 -14292 NM_139249 245802 Hs.662211 NM_139249 ENSG00000166926 MS4A6E - membrane spanning 4-domains A6E protein-coding 153.5-57 chr20 20624469 20624751 + 1 NA intron (NM_020343, intron 10 of 39) HAL1b|LINE|L1 88034 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 168.25-80 chr9 28133404 28133615 + 1 NA intron (NM_152570, intron 5 of 6) L2c|LINE|L2 -559643 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 311.25 chr10 105968919 105969601 + 1 NA Intergenic Intergenic -148927 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 166.25-48 chr4 85596454 85596752 + 1 NA intron (NM_001025616, intron 2 of 9) intron (NM_001025616, intron 2 of 9) 121453 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 148.25-26 chr13 39672303 39672561 + 1 NA intron (NM_001145079, intron 4 of 18) L1MB7|LINE|L1 -8297 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 194.5-16 chr13 27134247 27134713 + 1 NA intron (NR_046547, intron 1 of 2) Kanga2_a|DNA|TcMar-Tc2 8947 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 244.25-24 chr8 120808324 120808718 + 1 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) 3525 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 147.75-117 chr9 70277586 70277759 + 1 NA intron (NM_015110, intron 4 of 24) intron (NM_015110, intron 4 of 24) 18694 NM_015110 23137 Hs.534189 NM_015110 ENSG00000198887 SMC5 SMC5L1 structural maintenance of chromosomes 5 protein-coding 290.75-10 chr9 118681403 118681742 + 1 NA intron (NR_151725, intron 1 of 3) (TA)n|Simple_repeat|Simple_repeat 1901 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 227.75-26 chr5 90362547 90362868 + 1 NA Intergenic L1PB2|LINE|L1 47079 NM_001297768 1070 Hs.591767 NM_004365 ENSG00000153140 CETN3 CDC31|CEN3 centrin 3 protein-coding 230.5-23 chr4 43129714 43130091 + 1 NA Intergenic Intergenic 236636 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 212.5-44 chr6 49685176 49685706 + 1 NA Intergenic L1MC4a|LINE|L1 28102 NM_001142417 7180 Hs.2042 NM_003296 ENSG00000124490 CRISP2 CRISP-2|CT36|GAPDL5|TPX1|TSP1 cysteine rich secretory protein 2 protein-coding 207.75-15 chr15 71169281 71169612 + 1 NA intron (NR_120349, intron 1 of 1) L1ME3|LINE|L1 19613 NR_120349 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 258.5-9 chr17 69913017 69913332 + 1 NA Intergenic Intergenic -48533 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 223.5-48 chr9 115491098 115491349 + 1 NA Intergenic Intergenic 253016 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 288.25-2 chr10 91287175 91287685 + 1 NA Intergenic Intergenic 66767 NM_032373 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 254.25-12 chr5 45877497 45877819 + 1 NA Intergenic Cheshire|DNA|hAT-Charlie -181278 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 176.5-12 chr11 81971978 81972249 + 1 NA intron (NR_120571, intron 6 of 7) L1MC|LINE|L1 -81277 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 320.75-5 chr14 31905641 31906222 + 1 NA Intergenic L1MA9|LINE|L1 -38922 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 170.5-70 chr7 89615696 89615906 + 1 NA Intergenic Intergenic -503599 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 231.25-20 chr18 69820189 69820548 + 1 NA intron (NM_152721, intron 7 of 7) intron (NM_152721, intron 7 of 7) 127505 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 153.5-29 chr14 56252379 56252646 + 1 NA intron (NM_021255, intron 2 of 5) LTR9|LTR|ERV1 134101 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 275.75-2 chr1 185347058 185347531 + 1 NA Intergenic Intergenic -12255 NR_038424 100288079 Hs.131220 NR_038424 ENSG00000261024 GS1-279B7.1 - microtubule associated protein 1 light chain 3 beta pseudogene pseudo 157.5-104 chr8 86970288 86970660 + 1 NA intron (NM_173538, intron 4 of 10) L1PA16|LINE|L1 104059 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 213.25-23 chr2 195481514 195482123 + 1 NA Intergenic Intergenic -175140 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 156.25-106 chr9 108024254 108024511 + 1 NA Intergenic MIRb|SINE|MIR -534613 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 221.75-32 chr8 13558465 13558790 + 1 NA intron (NM_001348082, intron 1 of 16) intron (NM_001348082, intron 1 of 16) -8242 NM_001007090 157773 Hs.104941 NM_001007090 ENSG00000164743 C8orf48 - chromosome 8 open reading frame 48 protein-coding 264.25-11 chr2 11460075 11460637 + 1 NA intron (NM_001278277, intron 1 of 8) intron (NM_001278277, intron 1 of 8) 5805 NM_001278276 1876 Hs.603093 NM_198256 ENSG00000169016 E2F6 E2F-6 E2F transcription factor 6 protein-coding 182.5-5 chr10 33243010 33243316 + 1 NA intron (NM_001244973, intron 6 of 16) intron (NM_001244973, intron 6 of 16) 91504 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 283.5 chr14 20148028 20148315 + 1 NA Intergenic L1MA3|LINE|L1 4435 NM_001004724 390437 Hs.553766 NM_001004724 ENSG00000184394 OR4N5 - olfactory receptor family 4 subfamily N member 5 protein-coding 260.25-27 chr8 110786628 110787128 + 1 NA Intergenic Charlie1b|DNA|hAT-Charlie 240555 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 178.5-5 chr1 188943994 188944275 + 1 NA Intergenic L2c|LINE|L2 1500506 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 235.5-9 chr12 108078236 108078528 + 1 NA Intergenic MIRb|SINE|MIR -50906 NM_014653 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 298.75-5 chr2 63441989 63442485 + 1 NA intron (NR_148704, intron 7 of 18) MIR|SINE|MIR -4230 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 261.5-24 chr7 123036832 123037345 + 1 NA Intergenic Intergenic -41388 NM_016945 50833 Hs.272395 NM_016945 ENSG00000128519 TAS2R16 BGLPT|T2R16 taste 2 receptor member 16 protein-coding 228.25-36 chr9 34932311 34932589 + 1 NA Intergenic Intergenic -25037 NM_001304333 23349 Hs.7989 NM_015297 ENSG00000122733 PHF24 - PHD finger protein 24 protein-coding 248.5-25 chr7 131047583 131048021 + 1 NA intron (NR_109850, intron 3 of 5) intron (NR_109850, intron 3 of 5) 59228 NR_024153 378805 Hs.150556 NM_001085379 ENSG00000231721 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 276.25-2 chr1 215562961 215563424 + 1 NA Intergenic L2|LINE|L2 -4112 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 246.5-13 chr2 126203300 126203764 + 1 NA Intergenic L1MD2|LINE|L1 -85547 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 149.5-25 chr14 58919166 58919462 + 1 NA intron (NR_110547, intron 3 of 5) intron (NR_110547, intron 3 of 5) 91026 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 362.25-3 chr14 64856022 64856692 + 1 NA intron (NM_001355436, intron 1 of 35) intron (NM_001355436, intron 1 of 35) 23550 NM_001355437 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 290.75-5 chr2 72464261 72464615 + 1 NA intron (NM_001321729, intron 18 of 22) L1MEg1|LINE|L1 -316576 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 200.25-2 chr1 46712101 46712556 + 1 NA intron (NM_014774, intron 2 of 10) intron (NM_014774, intron 2 of 10) 6786 NM_014774 9813 Hs.707688 NM_014774 ENSG00000159658 EFCAB14 KIAA0494 EF-hand calcium binding domain 14 protein-coding 171.5-91 chr7 18129649 18129968 + 1 NA intron (NM_001204144, intron 1 of 12) L2a|LINE|L2 -2499 NR_031635 100302140 NR_031635 ENSG00000221393 MIR1302-6 MIRN1302-6|hsa-mir-1302-6 microRNA 1302-6 ncRNA 339.25 chr1 90122080 90122730 + 1 NA Intergenic Intergenic 127295 NM_001320185 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 232.75-24 chr4 43747841 43748255 + 1 NA Intergenic Intergenic -255505 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 224.25-35 chr7 96074400 96074852 + 1 NA intron (NM_004411, intron 14 of 16) intron (NM_004411, intron 14 of 16) 145130 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 183.25-26 chr15 38543673 38543989 + 1 NA intron (NM_001306086, intron 2 of 14) L1MEf|LINE|L1 20983 NM_001306086 10125 Hs.591127 NM_005739 ENSG00000172575 RASGRP1 CALDAG-GEFI|CALDAG-GEFII|RASGRP RAS guanyl releasing protein 1 protein-coding 329.25-6 chr8 121100542 121101084 + 1 NA Intergenic Intergenic -288767 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 215.25-34 chr5 19233547 19233955 + 1 NA Intergenic Intergenic 652521 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 167.75-27 chr14 48007188 48007501 + 1 NA Intergenic Intergenic -212330 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 191.25-26 chr14 73696255 73696687 + 1 NA 3' UTR (NM_031427, exon 8 of 8) 3' UTR (NM_031427, exon 8 of 8) 17913 NM_006029 9240 Hs.194709 NM_006029 ENSG00000176903 PNMA1 MA1 PNMA family member 1 protein-coding 322.25-4 chr22 46785191 46785816 + 1 NA intron (NM_001284305, intron 1 of 12) L1MB8|LINE|L1 11576 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 229.25-5 chr1 222246782 222247073 + 1 NA Intergenic L1MC4|LINE|L1 -268407 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 322.75-5 chr8 85483456 85483858 + 1 NA Intergenic Intergenic -18742 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 359.25-6 chr8 111596116 111596750 + 1 NA Intergenic Intergenic 219794 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 190.5-55 chr5 170859766 170860104 + 1 NA Intergenic AluJb|SINE|Alu -2083 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 441.5-2 chr1 102478691 102479208 + 1 NA Intergenic Intergenic -481715 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 324.5-4 chr16 5974502 5974951 + 1 NA Intergenic Intergenic -44298 NM_018723 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 298.75-10 chr8 132292194 132292872 + 1 NA intron (NM_004519, intron 1 of 14) (TGGA)n|Simple_repeat|Simple_repeat 154729 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 190.5-20 chr17 68693195 68693455 + 1 NA Intergenic MER5A|DNA|hAT-Charlie 65171 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 238.5-11 chr11 27879043 27879426 + 1 NA Intergenic MIRc|SINE|MIR -157204 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 340.5 chr1 118708239 118708838 + 1 NA Intergenic L1PA5|LINE|L1 279805 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 564.25 chr22 28176699 28177602 + 1 NA intron (NM_001145418, intron 5 of 22) L1MC2|LINE|L1 -256538 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 276.25-12 chr7 120205606 120206229 + 1 NA Intergenic L1M6|LINE|L1 -67258 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 164.75-94 chr8 137618519 137618829 + 1 NA Intergenic Charlie20a|DNA|hAT-Charlie -205086 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 159.75-25 chr12 13855322 13855507 + 1 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 124942 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 267.25-7 chr3 13901297 13901733 + 1 NA Intergenic Intergenic -21444 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 199.75-28 chr2 21458151 21458377 + 1 NA Intergenic L1MC4a|LINE|L1 252388 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 171.5-99 chr8 109590664 109591069 + 1 NA intron (NM_001099754, intron 3 of 6) L1MC5|LINE|L1 12593 NM_001363032 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 206.75-21 chr2 28026729 28026989 + 1 NA intron (NM_199193, intron 6 of 13) intron (NM_199193, intron 6 of 13) 30492 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 216.75-30 chr7 19104892 19105155 + 1 NA Intergenic Intergenic 12613 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 279.25-5 chr14 66998089 66998613 + 1 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -191089 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 325.25 chr10 84825630 84826329 + 1 NA Intergenic (ATATT)n|Simple_repeat|Simple_repeat 372926 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 253.5-10 chr19 52448535 52448960 + 1 NA intron (NM_001291368, intron 4 of 4) intron (NM_001291368, intron 4 of 4) -4806 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 175.5 chr1 26524167 26524488 + 1 NA Intergenic L2b|LINE|L2 -5434 NM_002953 6195 Hs.149957 NM_002953 ENSG00000117676 RPS6KA1 HU-1|MAPKAPK1A|RSK|RSK1|p90Rsk ribosomal protein S6 kinase A1 protein-coding 220.5-21 chr2 104872824 104873357 + 1 NA promoter-TSS (NR_110373) promoter-TSS (NR_110373) -495 NR_110374 102682016 Hs.638438 NR_110373 ENSG00000229743 LINC01159 linc-Brn1b long intergenic non-protein coding RNA 1159 ncRNA 251.25-32 chr9 9690875 9691305 + 1 NA intron (NM_002839, intron 7 of 45) L1MA2|LINE|L1 -108302 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 226.25-34 chr9 27345637 27346311 + 1 NA intron (NM_024761, intron 3 of 3) MLT1A0|LTR|ERVL-MaLR -48824 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 186.5-36 chr21 28496631 28496896 + 1 NA Intergenic MER34|LTR|ERV1 -42555 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 237.5-8 chr17 11555927 11556331 + 1 NA intron (NM_001173462, intron 4 of 4) intron (NM_001173462, intron 4 of 4) -42341 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 340.75-3 chr5 7496572 7497059 + 1 NA intron (NM_020546, intron 2 of 24) intron (NM_020546, intron 2 of 24) 100677 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 182.5-41 chr3 61415637 61416033 + 1 NA Intergenic THE1C|LTR|ERVL-MaLR -145736 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 222.5-56 chr9 37897445 37897710 + 1 NA intron (NM_033412, intron 2 of 2) L1M2|LINE|L1 6550 NM_033412 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 200.5-29 chr18 73160140 73160498 + 1 NA intron (NR_034133, intron 4 of 5) L1MB7|LINE|L1 104179 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 402.75-2 chr14 62358459 62359047 + 1 NA Intergenic Intergenic -218780 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 222.5-19 chr15 59422020 59422381 + 1 NA Intergenic AluJo|SINE|Alu -15986 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 185.75-62 chr5 61445443 61445730 + 1 NA intron (NM_020928, intron 1 of 13) LOR1-int|LTR|ERV1 113328 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 185.75-29 chr17 47371443 47371850 + 1 NA intron (NM_001195192, intron 9 of 21) AluSx|SINE|Alu 47691 NM_001195192 124989 Hs.463303 NM_152347 ENSG00000178852 EFCAB13 C17orf57 EF-hand calcium binding domain 13 protein-coding 298.25-9 chr8 85321464 85322200 + 1 NA Intergenic Intergenic 19882 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 246.5-25 chr7 46991679 46991971 + 1 NA Intergenic L2a|LINE|L2 -294703 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 173.5-88 chr8 80965762 80965935 + 1 NA Intergenic Intergenic -91067 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 162.25-19 chr14 52810903 52811178 + 1 NA Intergenic MER21C|LTR|ERVL -19433 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 284.5-14 chr8 111325719 111326117 + 1 NA Intergenic Intergenic -50721 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 165.5-48 chr2 120355794 120356115 + 1 NA Intergenic Intergenic 9818 NM_002193 3625 Hs.1735 NM_002193 ENSG00000163083 INHBB - inhibin subunit beta B protein-coding 165.75-37 chr18 45449414 45449767 + 1 NA intron (NR_110899, intron 6 of 7) intron (NR_110899, intron 6 of 7) 57446 NR_110899 101927980 Hs.591058 NR_110899 SLC14A2-AS1 - SLC14A2 antisense RNA 1 ncRNA 173.5-68 chr5 117351124 117351455 + 1 NA Intergenic MLT1A1|LTR|ERVL-MaLR -64223 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 229.5-10 chr13 91988492 91988791 + 1 NA intron (NM_004466, intron 6 of 7) intron (NM_004466, intron 6 of 7) 363566 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 267.5-6 chr14 35889261 35889787 + 1 NA Intergenic MER63D|DNA|hAT-Blackjack 63186 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 267.5-19 chr5 104434903 104435197 + 1 NA Intergenic Intergenic -664424 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 296.25-5 chr10 74340229 74340776 + 1 NA intron (NM_001369124, intron 4 of 9) intron (NM_001369124, intron 4 of 9) 163739 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 227.5-14 chr2 147805232 147805503 + 1 NA Intergenic Intergenic -39150 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 500.5 chr14 81872097 81872990 + 1 NA Intergenic Intergenic -129405 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 269.75-9 chr3 114448927 114449275 + 1 NA intron (NM_001348805, intron 7 of 10) intron (NM_001348805, intron 7 of 10) -4492 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 151.5-73 chr4 32952606 32952872 + 1 NA Intergenic L2c|LINE|L2 601701 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 228.75-25 chr8 83426140 83426696 + 1 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 22660 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 186.75-67 chr5 32939047 32939241 + 1 NA Intergenic Intergenic -8299 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 187.25-69 chr8 122404569 122405036 + 1 NA Intergenic (TTTC)n|Simple_repeat|Simple_repeat 163842 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 243.25-4 chr10 91319428 91319927 + 1 NA intron (NR_024467, intron 4 of 4) intron (NR_024467, intron 4 of 4) -89558 NM_001348365 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 205.75-38 chr3 32256142 32256489 + 1 NA intron (NM_001320308, intron 1 of 2) AluJo|SINE|Alu 17635 NM_178868 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 148.25-64 chr4 79320496 79320670 + 1 NA intron (NM_032693, intron 1 of 1) MIR|SINE|MIR 5478 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 152.75-102 chr8 109897259 109897550 + 1 NA Intergenic Intergenic 78367 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 235.25-15 chr3 64185389 64185791 + 1 NA intron (NM_001370528, intron 2 of 7) L4_C_Mam|LINE|RTE-X -1954 NR_046702 100874243 Hs.670840 NR_046702 ENSG00000226017 PRICKLE2-AS3 - PRICKLE2 antisense RNA 3 ncRNA 280.75-10 chr21 21770649 21771280 + 1 NA intron (NR_109958, intron 2 of 4) Zaphod3|DNA|hAT-Tip100 23979 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 167.5-26 chr14 86923629 86923944 + 1 NA Intergenic MER1A|DNA|hAT-Charlie 18008 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 151.75-111 chr8 130834342 130834684 + 1 NA intron (NM_001115, intron 12 of 17) L1ME3Cz|LINE|L1 206396 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 156.75-80 chr5 165881907 165882098 + 1 NA Intergenic Intergenic 1044368 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 173.25-32 chr18 70294601 70294993 + 1 NA intron (NM_004232, intron 1 of 1) intron (NM_004232, intron 1 of 1) 5752 NM_004232 9306 Hs.44439 NM_004232 ENSG00000170677 SOCS6 CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4 suppressor of cytokine signaling 6 protein-coding 224.75-15 chr14 103393681 103394135 + 1 NA intron (NM_001128920, intron 1 of 15) AluSq2|SINE|Alu 8493 NM_001128918 4140 Hs.35828 NM_002376 ENSG00000075413 MARK3 CTAK1|KP78|PAR1A|Par-1a|VIPB microtubule affinity regulating kinase 3 protein-coding 156.5-17 chr10 9011096 9011333 + 1 NA Intergenic Intergenic 113225 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 189.5-3 chr1 196386989 196387193 + 1 NA intron (NM_001287820, intron 13 of 26) intron (NM_001287820, intron 13 of 26) 195390 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 269.5-13 chr4 60237241 60237955 + 1 NA Intergenic Intergenic -685021 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 193.25-44 chr4 36170244 36170671 + 1 NA intron (NR_146894, intron 9 of 32) intron (NR_146894, intron 9 of 32) 73482 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 203.75-3 chr12 13322962 13323192 + 1 NA Intergenic Intergenic 53668 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 232.75-32 chr7 143439988 143440548 + 1 NA intron (NR_033897, intron 2 of 4) intron (NR_033897, intron 2 of 4) -3185 NM_177437 338398 Hs.688222 NM_177437 ENSG00000185899 TAS2R60 T2R56|T2R60 taste 2 receptor member 60 protein-coding 172.25-32 chr2 103074447 103074654 + 1 NA Intergenic L1M1|LINE|L1 -90121 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 316.5-4 chr21 27457826 27458451 + 1 NA Intergenic Intergenic -264241 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 287.5-8 chr15 63186240 63186788 + 1 NA Intergenic Intergenic -3092 NM_016530 51762 Hs.389733 NM_016530 ENSG00000166128 RAB8B - RAB8B, member RAS oncogene family protein-coding 241.25-4 chr1 224124601 224125009 + 1 NA intron (NR_049764, intron 1 of 3) AluSx1|SINE|Alu 10694 NM_015176 23219 Hs.64691 NM_015176 ENSG00000143756 FBXO28 CENP-30|Fbx28 F-box protein 28 protein-coding 157.5-53 chr20 7019390 7019586 + 1 NA Intergenic Intergenic 234714 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 292.5-10 chr7 12529299 12529717 + 1 NA intron (NR_136263, intron 2 of 3) MER4D|LTR|ERV1 25111 NR_136263 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 281.5-5 chr10 50955024 50955459 + 1 NA Intergenic Intergenic -35647 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 149.75-32 chr17 72093725 72094008 + 1 NA TTS (NR_110827) TTS (NR_110827) 21533 NR_110827 101928205 Hs.620808 NR_110827 ENSG00000226101 LINC02097 - long intergenic non-protein coding RNA 2097 ncRNA 184.5-8 chr1 108485433 108485797 + 1 NA Intergenic Intergenic 35333 NM_001143988 653149 Hs.712226 NM_001143987 ENSG00000186086 NBPF6 - NBPF member 6 protein-coding 233.25-9 chr11 88111096 88111465 + 1 NA Intergenic ERVL-E-int|LTR|ERVL 64163 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 311.5-5 chr16 56890763 56891191 + 1 NA intron (NM_001126108, intron 19 of 25) intron (NM_001126108, intron 19 of 25) -13287 NR_106923 102466752 NR_106923 ENSG00000283471 MIR6863 hsa-mir-6863 microRNA 6863 ncRNA 244.75-17 chr4 139613203 139613640 + 1 NA Intergenic Intergenic -52347 NM_001204367 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 263.5-4 chr10 117017558 117017908 + 1 NA intron (NM_001258300, intron 2 of 17) L1MC3|LINE|L1 -12156 NM_001258299 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 190.5-33 chr21 21787082 21787555 + 1 NA intron (NR_109958, intron 4 of 4) intron (NR_109958, intron 4 of 4) 40333 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 281.5-14 chr17 50726809 50727202 + 1 NA intron (NM_006107, intron 1 of 10) AluSx1|SINE|Alu 7402 NM_001330330 51747 Hs.130293 NM_006107 ENSG00000108848 LUC7L3 CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A LUC7 like 3 pre-mRNA splicing factor protein-coding 309.75-5 chr8 66782871 66783383 + 1 NA intron (NM_013257, intron 1 of 16) L1MC1|LINE|L1 7922 NM_170709 23678 Hs.613417 NM_013257 ENSG00000104205 SGK3 CISK|SGK2|SGKL serum/glucocorticoid regulated kinase family member 3 protein-coding 419.75 chr7 39997497 39998074 + 1 NA intron (NM_003718, intron 3 of 13) intron (NM_003718, intron 3 of 13) 47425 NM_031267 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 182.75-24 chr14 65629163 65629514 + 1 NA intron (NM_004480, intron 4 of 9) intron (NM_004480, intron 4 of 9) 158236 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 209.25-43 chr7 111405429 111405681 + 1 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 156736 NM_032549 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 184.75-48 chr21 28322029 28322446 + 1 NA Intergenic L1MDa|LINE|L1 -93570 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 331.5-4 chr4 31919152 31919762 + 1 NA Intergenic Intergenic -77922 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 271.75-8 chr17 64404218 64404779 + 1 NA Intergenic AluSx|SINE|Alu -13638 NM_000442 5175 Hs.376675 NM_000442 ENSG00000261371 PECAM1 CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM platelet and endothelial cell adhesion molecule 1 protein-coding 168.75-102 chr8 111851065 111851297 + 1 NA Intergenic L1MA6|LINE|L1 474542 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 163.25-48 chr3 36113443 36113684 + 1 NA Intergenic MLT1E2|LTR|ERVL-MaLR -266924 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 224.75-10 chr12 59358318 59358768 + 1 NA Intergenic L1ME3C|LINE|L1 -237486 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 145.75-24 chr12 89458953 89459220 + 1 NA intron (NM_172240, intron 10 of 11) intron (NM_172240, intron 10 of 11) 65710 NM_003774 8693 Hs.25130 NM_003774 ENSG00000257594 GALNT4 GALNAC-T4|GALNACT4 polypeptide N-acetylgalactosaminyltransferase 4 protein-coding 151.75-2 chr1 80611839 80612082 + 1 NA intron (NR_125940, intron 2 of 3) L1MEg2|LINE|L1 -29327 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 193.25-42 chr4 30794613 30794998 + 1 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 74436 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 148.5-13 chr10 49236227 49236411 + 1 NA Intergenic Intergenic -47928 NM_001353330 170371 Hs.385493 NM_001010863 ENSG00000204161 TMEM273 C10orf128 transmembrane protein 273 protein-coding 201.5-41 chr3 101214870 101215152 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR 105564 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 189.75-70 chr7 31544609 31544951 + 1 NA intron (NM_001257968, intron 1 of 14) intron (NM_001257968, intron 1 of 14) -8222 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 213.25-11 chr14 55101819 55102227 + 1 NA Intergenic L1MC4|LINE|L1 -27229 NM_002306 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 174.75-58 chr7 52443585 52443869 + 1 NA Intergenic L1MC2|LINE|L1 -591906 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 222.5-30 chr20 33596153 33596504 + 1 NA intron (NM_005093, intron 2 of 11) intron (NM_005093, intron 2 of 11) 33963 NM_001039709 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 partner transcriptional co-repressor 2 protein-coding 204.5-6 chr1 216373008 216373367 + 1 NA intron (NM_206933, intron 3 of 71) L2c|LINE|L2 50209 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 286.5-15 chr7 41679970 41680441 + 1 NA Intergenic MIR|SINE|MIR -13714 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 223.25-32 chr8 70793025 70793351 + 1 NA Intergenic L1M4|LINE|L1 123849 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 151.25-77 chr6 18504429 18504643 + 1 NA Intergenic L2c|LINE|L2 -18211 NR_149116 105374956 Hs.561599 NR_149116 MIR548A1HG - MIR548A1 host gene ncRNA 164.5-45 chr20 6115492 6115819 + 1 NA intron (NM_017671, intron 3 of 14) intron (NM_017671, intron 3 of 14) 7889 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 355.5 chr11 11341232 11341771 + 1 NA intron (NM_198516, intron 6 of 10) intron (NM_198516, intron 6 of 10) 11749 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 212.25-22 chr2 25878330 25878673 + 1 NA promoter-TSS (NM_018263) promoter-TSS (NM_018263) -14 NM_018263 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 240.25-14 chr21 29531338 29531764 + 1 NA Intergenic Intergenic 35504 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 156.5-2 chr1 51911950 51912258 + 1 NA 3' UTR (NM_002867, exon 5 of 5) 3' UTR (NM_002867, exon 5 of 5) -33167 NM_002525 4898 Hs.584782 NM_002525 ENSG00000078618 NRDC NRD1|hNRD1|hNRD2 nardilysin convertase protein-coding 241.5-21 chr5 8526698 8527070 + 1 NA Intergenic Intergenic 65959 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 238.75-9 chr13 66223890 66224411 + 1 NA Intergenic Intergenic 5900 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 168.5-104 chr9 92213078 92213368 + 1 NA intron (NR_073446, intron 32 of 32) intron (NR_073446, intron 32 of 32) -22067 NM_001350291 138652 Hs.742918 NM_001350291 PRSS47 - serine protease 47 protein-coding 211.5-38 chr4 132478254 132478586 + 1 NA Intergenic L2a|LINE|L2 -112669 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 255.75-9 chr2 159061692 159062151 + 1 NA intron (NM_001350065, intron 3 of 27) intron (NM_001350065, intron 3 of 27) 93281 NR_146421 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 255.5-15 chr2 14128235 14128522 + 1 NA Intergenic Intergenic 272580 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 241.75-26 chr8 57595627 57596166 + 1 NA Intergenic Intergenic -150253 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 268.5-3 chr1 238147756 238148137 + 1 NA Intergenic Intergenic -257024 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 377.75 chr12 133108135 133108605 + 1 NA TTS (NM_001300776) TTS (NM_001300776) 22103 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 218.5-2 chr1 75144542 75144871 + 1 NA intron (NM_001001933, intron 7 of 9) intron (NM_001001933, intron 7 of 9) 10318 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 285.5-2 chr1 97032358 97033031 + 1 NA Intergenic Intergenic -63229 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 153.5-85 chr5 85029255 85029441 + 1 NA Intergenic Intergenic -644468 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 224.5-38 chr8 121875791 121876043 + 1 NA Intergenic Intergenic -234477 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 229.5-4 chr11 81118170 81118589 + 1 NA Intergenic Intergenic -355576 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 191.25-21 chr12 86606975 86607340 + 1 NA intron (NM_001351285, intron 2 of 8) intron (NM_001351285, intron 2 of 8) 137992 NR_162123 113839519 NR_162123 MIR3059 - microRNA 3059 ncRNA 305.75-7 chr7 40652022 40652583 + 1 NA intron (NM_001193312, intron 11 of 12) L1M6|LINE|L1 327637 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 203.25-36 chr6 26095884 26096169 + 1 NA TTS (NM_000410) TTS (NM_000410) -4992 NR_144383 108783645 Hs.233325 NR_144383 LOC108783645 - HFE antisense RNA ncRNA 235.75-29 chr7 46495740 46496176 + 1 NA Intergenic L1MC1|LINE|L1 201164 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 194.5-60 chr8 121864711 121865128 + 1 NA Intergenic Intergenic -223479 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 241.5-33 chr8 114080142 114080573 + 1 NA Intergenic L1ME3D|LINE|L1 -643418 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 238.25-26 chr5 145092949 145093394 + 1 NA Intergenic L1MEf|LINE|L1 742171 NM_138492 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 171.25-4 chr1 172756473 172756698 + 1 NA Intergenic Intergenic 97482 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 208.5-5 chr10 55428076 55428421 + 1 NA intron (NM_001354404, intron 2 of 34) L1MEc|LINE|L1 -170794 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 163.5-86 chr4 139133920 139134304 + 1 NA intron (NM_001371339, intron 3 of 9) L1ME1|LINE|L1 43106 NM_001371324 437.75-2 chr4 58629490 58630374 + 1 NA Intergenic Intergenic -93604 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 204.75-57 chr8 113925760 113926166 + 1 NA Intergenic L1ME1|LINE|L1 -489024 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 208.75-17 chr2 68548161 68548530 + 1 NA intron (NM_173545, intron 8 of 9) L1M5|LINE|L1 80760 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 398.75-2 chr8 126211620 126212217 + 1 NA Intergenic L1PA15|LINE|L1 -113577 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 205.25-30 chr5 54871933 54872165 + 1 NA Intergenic Intergenic 113544 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 304.25-9 chr3 87752582 87752999 + 1 NA Intergenic Intergenic -39916 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 293.5-13 chr9 25015751 25016324 + 1 NA Intergenic L1MC3|LINE|L1 -470140 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 179.5-53 chr3 101606596 101606919 + 1 NA Intergenic L1M4b|LINE|L1 32577 NM_020357 57092 Hs.732633 NM_020357 ENSG00000081154 PCNP - PEST proteolytic signal containing nuclear protein protein-coding 200.25-24 chr17 27970651 27970948 + 1 NA intron (NR_146896, intron 2 of 4) MLT1L|LTR|ERVL-MaLR 20908 NR_146896 105371708 Hs.385535 NR_146896 LINC01992 - long intergenic non-protein coding RNA 1992 ncRNA 191.5-16 chr12 68481443 68482004 + 1 NA Intergenic Intergenic -30239 NR_120458 100507195 Hs.450772 NR_120458 ENSG00000251301 LINC02384 - long intergenic non-protein coding RNA 2384 ncRNA 152.5-56 chr2 182061503 182061851 + 1 NA intron (NM_001261425, intron 3 of 5) intron (NM_001261425, intron 3 of 5) 75824 NM_001261425 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 273.5-9 chr3 143352002 143352629 + 1 NA intron (NM_173653, intron 14 of 15) intron (NM_173653, intron 14 of 15) 10069 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 186.25-50 chr5 42689787 42690183 + 1 NA intron (NM_001242403, intron 4 of 9) intron (NM_001242403, intron 4 of 9) -66833 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 190.5-27 chr2 78578670 78578907 + 1 NA Intergenic Intergenic 33257 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 287.25-5 chr2 183018679 183019187 + 1 NA intron (NM_013436, intron 2 of 30) intron (NM_013436, intron 2 of 30) 19524 NM_205842 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 205.75-42 chr4 30318825 30319217 + 1 NA Intergenic Intergenic -401348 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 296.25-3 chr1 230212277 230212893 + 1 NA intron (NM_004481, intron 3 of 15) intron (NM_004481, intron 3 of 15) 145347 NM_004481 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 285.5-13 chr5 41585163 41585703 + 1 NA Intergenic LTR16A1|LTR|ERVL -74832 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 189.5-64 chr7 86594183 86594439 + 1 NA Intergenic Intergenic -49598 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 228.5-33 chr22 26590831 26591201 + 1 NA promoter-TSS (NM_001362922) promoter-TSS (NM_001362922) -884 NM_003595 8459 Hs.632768 NM_003595 ENSG00000128294 TPST2 TANGO13B|TPST-2 tyrosylprotein sulfotransferase 2 protein-coding 161.25-26 chr15 101197451 101197777 + 1 NA intron (NM_014918, intron 2 of 2) intron (NM_014918, intron 2 of 2) 54434 NM_014918 22856 Hs.110488 NM_014918 ENSG00000131873 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 240.25-28 chr8 36023071 36023390 + 1 NA Intergenic Intergenic -312910 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 154.5-76 chr5 32998726 32999092 + 1 NA Intergenic L1M5|LINE|L1 51466 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 268.75-2 chr11 29434958 29435322 + 1 NA Intergenic MIR|SINE|MIR -159273 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 191.5-52 chr6 73869968 73870213 + 1 NA Intergenic Intergenic 173887 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 217.75-17 chr2 45979014 45979236 + 1 NA intron (NM_005400, intron 4 of 14) intron (NM_005400, intron 4 of 14) -318282 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 168.5-82 chr5 28306107 28306312 + 1 NA Intergenic L1M4|LINE|L1 -18544 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 287.75 chr1 93504404 93504906 + 1 NA intron (NM_001024948, intron 2 of 13) L1M3|LINE|L1 56524 NM_001024948 54874 Hs.134060 NM_017737 ENSG00000137942 FNBP1L C1orf39|TOCA1 formin binding protein 1 like protein-coding 270.5-11 chr2 133341624 133341919 + 1 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 75576 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 240.25-5 chr10 121831847 121832233 + 1 NA intron (NM_001001976, intron 10 of 11) intron (NM_001001976, intron 10 of 11) 95991 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 192.25-29 chr17 56068196 56068699 + 1 NA Intergenic Intergenic -85028 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 201.5-39 chr3 69697080 69697423 + 1 NA Intergenic Intergenic -42213 NM_001354604 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 163.5-30 chr14 63740887 63741165 + 1 NA Intergenic L1PA16|LINE|L1 -12961 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 230.75-39 chr7 31760276 31760700 + 1 NA intron (NM_001191059, intron 18 of 18) intron (NM_001191059, intron 18 of 18) 73273 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 172.5-56 chr4 44361255 44361567 + 1 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 87398 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 174.25-33 chr2 210267398 210267615 + 1 NA Intergenic Intergenic 36109 NM_079422 4632 Hs.187338 NM_079420 ENSG00000168530 MYL1 MLC1F|MLC3F|MYOFTA myosin light chain 1 protein-coding 326.25-3 chr2 122867551 122868108 + 1 NA Intergenic L2c|LINE|L2 205652 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 217.5-5 chr10 7682297 7682596 + 1 NA Intergenic L1PA16|LINE|L1 -15448 NM_001001851 80760 Hs.498586 NM_030569 ENSG00000123243 ITIH5 ITI-HC5|PP14776 inter-alpha-trypsin inhibitor heavy chain 5 protein-coding 152.25-8 chr1 114903258 114903487 + 1 NA intron (NM_001282542, intron 16 of 30) L2b|LINE|L2 48509 NR_104211 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 225.5-49 chr7 57432858 57433154 + 1 NA Intergenic Intergenic -17171 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 250.25-27 chr9 21814825 21815228 + 1 NA intron (NM_002451, intron 1 of 7) intron (NM_002451, intron 1 of 7) 12390 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 327.25-3 chr2 29977706 29978203 + 1 NA Intergenic MIRc|SINE|MIR -56368 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 175.5-24 chr14 31311481 31311714 + 1 NA intron (NM_015473, intron 28 of 35) L1MD|LINE|L1 -103804 NM_015382 25831 Hs.708017 NM_015382 ENSG00000092148 HECTD1 EULIR HECT domain E3 ubiquitin protein ligase 1 protein-coding 213.75-4 chr1 193176697 193177194 + 1 NA intron (NM_024529, intron 10 of 16) intron (NM_024529, intron 10 of 16) 9668 NM_003783 8707 Hs.518834 NM_003783 ENSG00000162630 B3GALT2 BETA3GALT2|GLCT2|beta3Gal-T2 beta-1,3-galactosyltransferase 2 protein-coding 284.5-5 chr2 40809583 40809953 + 1 NA Intergenic L1M5|LINE|L1 -297333 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 179.5-74 chr7 112484482 112484679 + 1 NA intron (NM_182597, intron 1 of 3) L4_B_Mam|LINE|RTE-X 3589 NM_182597 286006 Hs.396189 NM_182597 ENSG00000181016 LSMEM1 C7orf53 leucine rich single-pass membrane protein 1 protein-coding 296.5-19 chr8 122940141 122940700 + 1 NA intron (NM_001362797, intron 3 of 4) intron (NM_001362797, intron 3 of 4) 85352 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 289.5-11 chr20 44344983 44345448 + 1 NA intron (NM_178491, intron 3 of 4) intron (NM_178491, intron 3 of 4) 8057 NM_178491 140902 Hs.580807 NM_178491 ENSG00000101074 R3HDML dJ881L22.3 R3H domain containing like protein-coding 254.25-15 chr5 169242907 169243299 + 1 NA intron (NM_003062, intron 3 of 35) MIRb|SINE|MIR 20591 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 240.75-13 chr20 21076432 21076675 + 1 NA Intergenic Charlie5|DNA|hAT-Charlie 29805 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 196.75-40 chr5 69000137 69000523 + 1 NA intron (NR_130778, intron 1 of 3) intron (NR_130778, intron 1 of 3) 29597 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 216.25-4 chr10 53675783 53676130 + 1 NA Intergenic Intergenic -810274 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 216.25-13 chr14 63459094 63459499 + 1 NA intron (NM_001354926, intron 2 of 2) intron (NM_001354926, intron 2 of 2) 48942 NM_001282181 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 266.5-17 chr8 84910130 84910547 + 1 NA intron (NM_001287244, intron 7 of 7) intron (NM_001287244, intron 7 of 7) -196900 NM_001349636 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 193.25-61 chr8 110656765 110657130 + 1 NA Intergenic L1PA17|LINE|L1 370486 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 430.25 chr2 67268481 67268951 + 1 NA intron (NR_110564, intron 3 of 4) intron (NR_110564, intron 3 of 4) -53397 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 272.5-13 chr3 111312679 111313181 + 1 NA Intergenic Intergenic -229267 NM_005816 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 235.5-24 chr3 174229390 174229774 + 1 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -308786 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 225.5-44 chr5 169313364 169313767 + 1 NA Intergenic L1ME1|LINE|L1 -12426 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 279.5-10 chr4 137396864 137397230 + 1 NA Intergenic Intergenic 135447 NM_001300828 54510 Hs.591691 NM_019035 ENSG00000189184 PCDH18 PCDH68L protocadherin 18 protein-coding 237.75-25 chr9 29852888 29853328 + 1 NA Intergenic L1PA17|LINE|L1 555346 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 225.25-12 chr14 86572645 86573086 + 1 NA Intergenic Intergenic -332913 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 196.75-45 chr5 148888601 148888985 + 1 NA Intergenic Intergenic 62200 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 280.25-2 chr10 83164328 83164752 + 1 NA Intergenic Intergenic 512549 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 193.75-25 chr16 13154475 13154807 + 1 NA intron (NM_001145204, intron 2 of 4) MLT1I|LTR|ERVL-MaLR 253043 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 191.5-31 chr2 235310715 235311091 + 1 NA Intergenic L1MB8|LINE|L1 -183140 NM_001244888 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 265.5-14 chr21 26544054 26544502 + 1 NA intron (NR_135515, intron 2 of 3) intron (NR_135515, intron 2 of 3) 29008 NM_052954 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 311.25-4 chr19 30321315 30321684 + 1 NA Intergenic AluSz|SINE|Alu -50885 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 252.75-2 chr1 151686211 151686514 + 1 NA intron (NM_030918, intron 8 of 11) intron (NM_030918, intron 8 of 11) 30441 NM_001291107 11189 Hs.26047 NM_007185 ENSG00000159409 CELF3 BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4 CUGBP Elav-like family member 3 protein-coding 345.75-2 chr17 55987384 55988052 + 1 NA Intergenic MLT1I|LTR|ERVL-MaLR -165757 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 189.25-18 chr16 61263752 61264005 + 1 NA Intergenic Intergenic -208112 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 215.5-34 chr22 46048874 46049233 + 1 NA Intergenic L1ME4a|LINE|L1 -4185 NR_027036 100271722 Hs.528519 NR_027036 LINC00899 - long intergenic non-protein coding RNA 899 ncRNA 270.75-9 chr15 66978231 66978543 + 1 NA Intergenic L1ME4a|LINE|L1 -21872 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 215.5-18 chr15 43354334 43354606 + 1 NA TTS (NM_001159280) TTS (NM_001159280) 15590 NM_152455 146050 Hs.418287 NM_152455 ENSG00000140265 ZSCAN29 ZNF690|Zfp690 zinc finger and SCAN domain containing 29 protein-coding 253.75-7 chr12 42168429 42168925 + 1 NA intron (NM_001190977, intron 1 of 2) intron (NM_001190977, intron 1 of 2) -23803 NM_173601 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 204.25-47 chr6 126841176 126841399 + 1 NA Intergenic Intergenic -277384 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 201.5-54 chr5 109407544 109407968 + 1 NA intron (NM_014819, intron 1 of 9) intron (NM_014819, intron 1 of 9) 2218 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 272.25-13 chr5 31221935 31222379 + 1 NA intron (NM_001362435, intron 1 of 10) intron (NM_001362435, intron 1 of 10) 28471 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 246.5 chr1 24844461 24844944 + 1 NA TTS (NM_013943) TTS (NM_013943) 74714 NR_106789 102465437 NR_106789 ENSG00000278034 MIR6731 hsa-mir-6731 microRNA 6731 ncRNA 257.25-2 chr1 104388482 104389015 + 1 NA Intergenic L1MA3|LINE|L1 315725 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 347.75-7 chr2 152117760 152118360 + 1 NA 3' UTR (NM_005843, exon 14 of 14) 3' UTR (NM_005843, exon 14 of 14) -18893 NM_000726 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 266.75-20 chr8 73423820 73424286 + 1 NA intron (NM_001164383, intron 8 of 9) L1MC2|LINE|L1 3979 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 162.5-11 chr1 195881166 195881515 + 1 NA Intergenic L1M2|LINE|L1 207375 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 270.5-14 chr5 32479183 32479727 + 1 NA Intergenic Intergenic -34715 NR_144318 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 158.75-59 chr4 90603378 90603647 + 1 NA intron (NM_207491, intron 5 of 7) LTR33B|LTR|ERVL 368481 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 238.5-41 chr8 140591725 140592138 + 1 NA intron (NM_001164623, intron 1 of 17) AluSq2|SINE|Alu 43702 NM_001164623 27161 Hs.660189 NM_012154 ENSG00000123908 AGO2 CASC7|EIF2C2|LINC00980|PPD|Q10 argonaute RISC catalytic component 2 protein-coding 232.25-2 chr1 102532190 102532626 + 1 NA Intergenic Intergenic -535174 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 174.5-75 chr7 49073570 49073835 + 1 NA Intergenic Intergenic 149155 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 180.5-15 chr13 43540261 43540526 + 1 NA intron (NM_001347965, intron 1 of 15) intron (NM_001347965, intron 1 of 15) 89084 NM_001127615 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 304.25-5 chr16 7618197 7618907 + 1 NA intron (NM_001142333, intron 10 of 14) intron (NM_001142333, intron 10 of 14) 285707 NM_145892 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 204.25-39 chr4 106005636 106006101 + 1 NA intron (NR_125928, intron 3 of 3) LTR33A|LTR|ERVL 16610 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 164.75-87 chr8 79184213 79184535 + 1 NA Intergenic L1PA15|LINE|L1 -147814 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 178.25-34 chr22 26934148 26934431 + 1 NA Intergenic MIRb|SINE|MIR 30997 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 174.5-69 chr6 27353968 27354170 + 1 NA Intergenic L1MA4|LINE|L1 17456 NR_002722 7754 Hs.8198 NR_002722 ZNF204P ZNF184-Lp|ZNF204|ZNF315P|b24o18.1 zinc finger protein 204, pseudogene pseudo 298.75-3 chr14 63073025 63073548 + 1 NA Intergenic MIR|SINE|MIR -27828 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 222.25-24 chr21 19399161 19399536 + 1 NA Intergenic Intergenic 500407 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 261.75-14 chr3 195193937 195194405 + 1 NA intron (NM_152531, intron 2 of 3) L1ME1|LINE|L1 46300 NR_102710 101410543 Hs.658170 NR_102710 ENSG00000230266 XXYLT1-AS2 - XXYLT1 antisense RNA 2 ncRNA 324.75-10 chr7 72077398 72077879 + 1 NA intron (NM_001363460, intron 3 of 5) intron (NM_001363460, intron 3 of 5) 259753 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 208.5-38 chr2 229775751 229776092 + 1 NA intron (NM_001348330, intron 37 of 41) intron (NM_001348330, intron 37 of 41) -61366 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 201.5-24 chr2 27224196 27224550 + 1 NA exon (NM_004341, exon 9 of 44) exon (NM_004341, exon 9 of 44) 6983 NM_001306079 790 Hs.377010 NM_004341 ENSG00000084774 CAD CDG1Z|EIEE50|GATD4 carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase protein-coding 154.75-106 chr9 30509001 30509271 + 1 NA Intergenic Intergenic -100682 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 151.75-33 chr16 1438454 1438673 + 1 NA intron (NM_001143980, intron 9 of 16) intron (NM_001143980, intron 9 of 16) 5926 NM_001143980 645811 Hs.355232 NM_001143980 ENSG00000197599 CCDC154 C16orf29 coiled-coil domain containing 154 protein-coding 213.5-28 chr3 45709060 45709443 + 1 NA intron (NM_001319071, intron 4 of 19) intron (NM_001319071, intron 4 of 19) 19855 NM_001319073 22908 Hs.156509 NM_014016 ENSG00000211456 SACM1L SAC1 SAC1 like phosphatidylinositide phosphatase protein-coding 161.75-75 chr5 23874965 23875299 + 1 NA Intergenic Intergenic -76216 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 190.5-24 chr18 37967420 37967719 + 1 NA Intergenic ERVL-E-int|LTR|ERVL 310434 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 281.5-27 chr6 63886432 63886991 + 1 NA intron (NM_001292009, intron 35 of 43) intron (NM_001292009, intron 35 of 43) 79875 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 333.25-4 chr6 72242486 72243297 + 1 NA intron (NM_001350433, intron 5 of 25) intron (NM_001350433, intron 5 of 25) 25950 NM_001350473 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 228.5-12 chr11 32316624 32317060 + 1 NA Intergenic Intergenic 83558 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 221.5-16 chr13 86366621 86366993 + 1 NA Intergenic MLT2A2|LTR|ERVL -545113 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 238.25-18 chr2 235478833 235479176 + 1 NA Intergenic Intergenic -15039 NM_001244888 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 147.25-81 chr6 37277974 37278237 + 1 NA intron (NR_130108, intron 2 of 12) AluJr|SINE|Alu -19950 NR_104442 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 236.25-28 chr6 34796521 34797034 + 1 NA intron (NM_017754, intron 1 of 20) AluSc|SINE|Alu 4694 NM_017754 54887 Hs.700656 NM_017754 ENSG00000065060 UHRF1BP1 C6orf107|ICBP90|dJ349A12.1 UHRF1 binding protein 1 protein-coding 258.25-3 chr10 24983626 24984017 + 1 NA non-coding (NR_072993, exon 3 of 3) non-coding (NR_072993, exon 3 of 3) -31215 NM_001282786 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 188.5-54 chr5 122849896 122850136 + 1 NA intron (NM_014035, intron 1 of 6) intron (NM_014035, intron 1 of 6) 4403 NM_014035 28966 Hs.483200 NM_014035 ENSG00000064652 SNX24 PRO1284|SBBI31 sorting nexin 24 protein-coding 226.5-19 chr3 109615799 109616243 + 1 NA Intergenic Intergenic 13193 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 223.5-13 chr12 12188862 12189199 + 1 NA intron (NM_002336, intron 3 of 22).2 intron (NM_002336, intron 3 of 22).2 77078 NR_036262 100422885 NR_036262 ENSG00000283498 MIR1244-2 - microRNA 1244-2 ncRNA 246.75-18 chr6 137997329 137997745 + 1 NA Intergenic L1ME2|LINE|L1 -51737 NR_149097 105378020 Hs.520420 NR_149097 ENSG00000226004 LINC02528 - long intergenic non-protein coding RNA 2528 ncRNA 185.5-3 chr1 48879533 48879864 + 1 NA intron (NM_001323575, intron 5 of 12) MIRb|SINE|MIR -102729 NM_001349794 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 188.5-8 chr10 89804177 89804432 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -25189 NR_038382 643529 Hs.618956 NR_038382 ENSG00000232229 LINC00865 - long intergenic non-protein coding RNA 865 ncRNA 181.25-12 chr12 23451132 23451465 + 1 NA Intergenic Charlie1b|DNA|hAT-Charlie 133288 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 285.5-17 chr8 77677197 77677804 + 1 NA Intergenic L1MA6|LINE|L1 226803 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 339.75 chr1 185172751 185173399 + 1 NA intron (NM_017673, intron 4 of 18) L1ME4a|LINE|L1 15908 NM_017673 54823 Hs.134183 NM_017673 ENSG00000116668 SWT1 C1orf26|HsSwt1 SWT1 RNA endoribonuclease homolog protein-coding 370.5-2 chr8 75371953 75372441 + 1 NA Intergenic Intergenic -35452 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 231.75-29 chr7 48165323 48165736 + 1 NA Intergenic L1PA16|LINE|L1 -5929 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 291.75 chr11 91267637 91268154 + 1 NA Intergenic MLT2C1|LTR|ERVL -398693 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 146.75-97 chr6 65356135 65356369 + 1 NA intron (NM_198283, intron 7 of 9) intron (NM_198283, intron 7 of 9) 54834 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 196.5 chr1 19021375 19021733 + 1 NA Intergenic AluSx3|SINE|Alu -64878 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 165.5-29 chr12 85623217 85623517 + 1 NA Intergenic Intergenic 213042 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 345.75 chr1 86783414 86783809 + 1 NA Intergenic L1MB2|LINE|L1 79035 NM_016009 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like, endophilin B1 protein-coding 190.5-62 chr8 80498020 80498229 + 1 NA intron (NM_001105539, intron 1 of 5) intron (NM_001105539, intron 1 of 5) 11898 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 185.25-66 chr5 60417629 60418042 + 1 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) -45172 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 149.5-30 chr15 69789348 69789597 + 1 NA Intergenic Intergenic -45762 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 304.5-12 chr8 122595222 122595656 + 1 NA Intergenic AluSx1|SINE|Alu -26795 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 232.5-53 chr9 80193113 80193516 + 1 NA Intergenic Intergenic 218291 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 181.75-27 chr14 60518421 60518683 + 1 NA Intergenic MIRb|SINE|MIR 9406 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 202.5-42 chr3 76343308 76343567 + 1 NA Intergenic Intergenic -557888 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 297.75-8 chr20 39380342 39380782 + 1 NA Intergenic MLT1F2|LTR|ERVL-MaLR -155814 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 278.5-20 chrX 21288565 21289019 + 1 NA Intergenic L1PA15|LINE|L1 -85626 NM_001168648 22866 Hs.555917 NM_014927 ENSG00000149970 CNKSR2 CNK2|KSR2|MAGUIN|MRXSHG connector enhancer of kinase suppressor of Ras 2 protein-coding 247.5-6 chr1 219060164 219060656 + 1 NA intron (NR_031644, intron 6 of 6) LTR41C|LTR|ERVL 113378 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 269.25-13 chr5 19658564 19658993 + 1 NA intron (NM_001349562, intron 5 of 13) L1PA4|LINE|L1 227494 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 151.5-79 chr4 138575738 138576073 + 1 NA Intergenic LTR89|LTR|ERVL? 266194 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 163.5-58 chr2 103755135 103755371 + 1 NA Intergenic L1M4b|LINE|L1 653079 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 180.5-40 chr2 136568250 136568600 + 1 NA Intergenic Intergenic -197120 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 247.75-25 chr8 51761766 51762339 + 1 NA intron (NM_144651, intron 1 of 22) intron (NM_144651, intron 1 of 22) 47393 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 191.25-11 chr10 27772676 27773107 + 1 NA Intergenic L1PB4|LINE|L1 -27072 NM_001242702 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 176.75-39 chr2 202350732 202350976 + 1 NA Intergenic Intergenic -25473 NM_001204 659 Hs.471119 NM_001204 ENSG00000204217 BMPR2 BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK bone morphogenetic protein receptor type 2 protein-coding 219.25-43 chr7 34643069 34643469 + 1 NA intron (NR_033664, intron 2 of 4) intron (NR_033664, intron 2 of 4) -14949 NM_207172 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 158.5-93 chr7 56266114 56266441 + 1 NA Intergenic AluSz|SINE|Alu -149860 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 353.5-2 chr12 14988250 14988923 + 1 NA Intergenic L1PA16|LINE|L1 -13247 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 270.5-22 chr8 118027766 118028329 + 1 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 83772 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 223.25-23 chr4 134807160 134807524 + 1 NA Intergenic Intergenic 316217 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 206.75-6 chr1 176585781 176586030 + 1 NA intron (NM_021936, intron 2 of 4) L1MA5A|LINE|L1 122730 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 170.25-18 chr14 68515992 68516293 + 1 NA intron (NM_001321818, intron 10 of 10) MLT1F|LTR|ERVL-MaLR 112645 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 168.75-66 chr3 33981159 33981495 + 1 NA Intergenic L2c|LINE|L2 182697 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 240.25-19 chr5 132927498 132927940 + 1 NA intron (NM_014423, intron 4 of 20) MIR|SINE|MIR 35915 NM_014423 27125 Hs.519313 NM_014423 ENSG00000072364 AFF4 AF5Q31|CHOPS|MCEF AF4/FMR2 family member 4 protein-coding 240.25-24 chr7 89127036 89127434 + 1 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -331498 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 465.75 chr3 15789540 15790424 + 1 NA intron (NM_001349284, intron 2 of 2) L1MA1|LINE|L1 7997 NR_146112 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 267.5-17 chr5 80025824 80026230 + 1 NA intron (NM_001306213, intron 2 of 22) intron (NM_001306213, intron 2 of 22) -9321 NM_003248 7060 Hs.211426 NM_003248 ENSG00000113296 THBS4 TSP-4|TSP4 thrombospondin 4 protein-coding 221.75-34 chr8 124896154 124896397 + 1 NA Intergenic Intergenic -45733 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 271.5-13 chr4 139088217 139088662 + 1 NA intron (NM_001371336, intron 4 of 8) L2|LINE|L2 -4025 NM_001276457 1998 Hs.634040 NM_006874 ENSG00000109381 ELF2 EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2 E74 like ETS transcription factor 2 protein-coding 305.75 chr1 170364085 170364534 + 1 NA Intergenic L1MA4A|LINE|L1 -80101 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 223.5-39 chr6 152870711 152870980 + 1 NA Intergenic Intergenic 112196 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 198.5-18 chr13 26821569 26821877 + 1 NA Intergenic Intergenic -60937 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 255.25-9 chr15 37332404 37332754 + 1 NA Intergenic Intergenic -231268 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 387.5-2 chr14 65510918 65511523 + 1 NA intron (NM_004480, intron 2 of 9) L1MA2|LINE|L1 40118 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 178.5-6 chr1 219128036 219128270 + 1 NA intron (NR_038845, intron 3 of 4) Tigger7|DNA|TcMar-Tigger 45635 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 236.75-8 chr19 28736313 28736743 + 1 NA Intergenic Intergenic -8834 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 271.5 chr1 72038824 72039223 + 1 NA intron (NM_173808, intron 1 of 6) L2c|LINE|L2 -202011 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 414.5-3 chr4 62996320 62996939 + 1 NA Intergenic L1M5|LINE|L1 -834864 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 229.75-33 chr7 19437795 19438145 + 1 NA Intergenic Plat_L3|LINE|CR1 267466 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 177.25-68 chr7 33278309 33278586 + 1 NA intron (NM_198428, intron 9 of 22) HUERS-P1-int|LTR|ERV1 148883 NM_001348040 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 179.25-36 chr18 43349980 43350217 + 1 NA Intergenic Intergenic -72608 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 288.5-18 chr7 51692323 51692623 + 1 NA Intergenic L1M6|LINE|L1 -299217 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 189.75-6 chr1 84227235 84227492 + 1 NA intron (NM_182948, intron 9 of 9) intron (NM_182948, intron 9 of 9) 45731 NM_001242862 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 159.25-29 chr18 4758310 4758505 + 1 NA Intergenic LTR16B|LTR|ERVL -303100 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 188.5-13 chr11 82184056 82184299 + 1 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 219736 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 182.25-61 chr8 79600751 79601053 + 1 NA Intergenic Intergenic -10215 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 159.5-75 chr5 42628614 42628904 + 1 NA intron (NM_001242460, intron 1 of 7) MER49|LTR|ERV1 62895 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 351.5 chr12 70125228 70125913 + 1 NA Intergenic L2b|LINE|L2 -117460 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 148.5-100 chr9 72663683 72663957 + 1 NA intron (NM_138691, intron 5 of 23) Tigger3b|DNA|TcMar-Tigger 142019 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 170.25-74 chr8 78990425 78990652 + 1 NA Intergenic Intergenic 153009 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 174.5-80 chr8 64821780 64822171 + 1 NA Intergenic Intergenic -23238 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 178.5-60 chr7 88457576 88457917 + 1 NA Intergenic Intergenic -150852 NM_024636 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 357.5-4 chr9 17116090 17116660 + 1 NA Intergenic Intergenic -18665 NM_001114395 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 190.5-49 chr5 37713321 37713611 + 1 NA intron (NM_001345998, intron 13 of 17) intron (NM_001345998, intron 13 of 17) 121356 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 152.75-21 chr11 102866613 102866911 + 1 NA intron (NM_002426, intron 6 of 9) MIRc|SINE|MIR 8220 NM_002426 4321 Hs.1695 NM_002426 ENSG00000262406 MMP12 HME|ME|MME|MMP-12 matrix metallopeptidase 12 protein-coding 180.5-10 chr11 90440258 90440574 + 1 NA intron (NR_104190, intron 1 of 6) ERVL-E-int|LTR|ERVL 115441 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 251.75-3 chr11 9423049 9423655 + 1 NA intron (NM_006391, intron 9 of 24) intron (NM_006391, intron 9 of 24) -5414 NR_002962 677808 Hs.689720 NR_002962 ENSG00000201998 SNORA23 ACA23 small nucleolar RNA, H/ACA box 23 snoRNA 355.75 chr1 77891068 77891677 + 1 NA intron (NM_001172309, intron 1 of 11) intron (NM_001172309, intron 1 of 11) -1833 NR_103535 374987 Hs.632414 NM_199343 ENSG00000235927 NEXN-AS1 C1orf118 NEXN antisense RNA 1 ncRNA 155.75-53 chr2 55367142 55367374 + 1 NA intron (NM_001254943, intron 5 of 33) L1MB3|LINE|L1 52598 NM_001135597 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL coiled-coil domain containing 88A protein-coding 191.75-54 chr6 55372886 55373320 + 1 NA intron (NM_207410, intron 6 of 8) MLT1J2-int|LTR|ERVL-MaLR 45634 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 219.25-50 chr8 126043949 126044283 + 1 NA Intergenic L1PA15-16|LINE|L1 -92919 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 182.75-22 chr14 43142492 43142883 + 1 NA Intergenic Intergenic 1364596 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 265.75-4 chr12 85990544 85991043 + 1 NA intron (NM_001351286, intron 5 of 7) intron (NM_001351286, intron 5 of 7) 116498 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 204.5-44 chr8 107304050 107304345 + 1 NA intron (NM_001199859, intron 4 of 8) intron (NM_001199859, intron 4 of 8) 32318 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 174.75-66 chr8 78687125 78687465 + 1 NA intron (NM_001362969, intron 4 of 9) intron (NM_001362969, intron 4 of 9) 21206 NR_156423 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 320.5-8 chr4 65742543 65743126 + 1 NA Intergenic MER41-int|LTR|ERV1 -72339 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 199.75-41 chr4 85466490 85467045 + 1 NA Intergenic Intergenic -8383 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 338.25-2 chr11 8443932 8444369 + 1 NA intron (NM_001352388, intron 10 of 14) intron (NM_001352388, intron 10 of 14) 149826 NM_030906 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 313.75-2 chr1 215876204 215876666 + 1 NA intron (NM_206933, intron 43 of 71) intron (NM_206933, intron 43 of 71) -196030 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 236.5-35 chr8 25654260 25654917 + 1 NA Intergenic L2a|LINE|L2 195355 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 267.25-4 chr2 74129371 74129830 + 1 NA Intergenic AluSx1|SINE|Alu 18312 NM_212552 388962 Hs.61472 NM_212552 ENSG00000163170 BOLA3 MMDS2 bolA family member 3 protein-coding 162.5-41 chr2 26222532 26222800 + 1 NA intron (NM_000182, intron 7 of 19) ERVL-E-int|LTR|ERVL 21966 NM_000182 3030 Hs.516032 NM_000182 ENSG00000084754 HADHA ECHA|GBP|HADH|LCEH|LCHAD|MTPA|TP-ALPHA hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha protein-coding 179.5-52 chr3 97175622 97175836 + 1 NA intron (NM_001080448, intron 3 of 17) L1MA1|LINE|L1 -263878 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 149.25-45 chr2 126061846 126062152 + 1 NA Intergenic L1PA13|LINE|L1 55986 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 258.5-19 chr4 35916458 35916888 + 1 NA Intergenic MIRc|SINE|MIR 327266 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 264.5-7 chr14 51581284 51581599 + 1 NA intron (NM_001042481, intron 2 of 14) intron (NM_001042481, intron 2 of 14) 18511 NR_047477 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 250.75-20 chr22 38552251 38552581 + 1 NA intron (NM_007068, intron 7 of 13) intron (NM_007068, intron 7 of 13) 15993 NM_001278208 11144 Hs.339396 NM_007068 ENSG00000100206 DMC1 DMC1H|LIM15|dJ199H16.1 DNA meiotic recombinase 1 protein-coding 157.5-62 chr3 193678659 193678907 + 1 NA intron (NM_130831, intron 26 of 27) intron (NM_130831, intron 26 of 27) -51451 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 248.5-27 chr8 112144356 112144765 + 1 NA Intergenic Intergenic -498933 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 214.5-14 chr16 23741822 23742062 + 1 NA Intergenic MER58B|DNA|hAT-Charlie -13084 NM_022097 63928 Hs.178589 NM_022097 ENSG00000166869 CHP2 - calcineurin like EF-hand protein 2 protein-coding 310.25 chr11 73715798 73716336 + 1 NA intron (NM_198896, intron 5 of 7) intron (NM_198896, intron 5 of 7) 44026 NM_001243719 5870 Hs.503222 NM_002869 ENSG00000175582 RAB6A RAB6 RAB6A, member RAS oncogene family protein-coding 168.75-49 chr2 125181857 125182069 + 1 NA Intergenic Intergenic 936022 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 215.25-29 chr4 32787104 32787575 + 1 NA Intergenic Intergenic 436301 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 282.75-5 chr2 187678110 187678447 + 1 NA Intergenic L1M2|LINE|L1 -123773 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 187.5-13 chr13 73025458 73025811 + 1 NA Intergenic Intergenic -29342 NM_001286818 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 289.25-17 chr8 30306169 30306576 + 1 NA Intergenic Intergenic -78129 NM_001008712 11030 Hs.334587 NM_006867 ENSG00000157110 RBPMS HERMES RNA binding protein, mRNA processing factor protein-coding 214.5-23 chr2 78512735 78513075 + 1 NA Intergenic Intergenic -32626 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 157.5-97 chr7 94973450 94973639 + 1 NA intron (NM_017650, intron 2 of 15) intron (NM_017650, intron 2 of 15) 63646 NM_001166163 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 297.5-6 chr14 45264735 45265348 + 1 NA Intergenic L2|LINE|L2 -11839 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 194.25-46 chr8 57099811 57100028 + 1 NA Intergenic MLT1J1|LTR|ERVL-MaLR -106052 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 241.5-35 chr8 127259831 127260177 + 1 NA intron (NR_117099, intron 1 of 3) MIR|SINE|MIR 15367 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 194.25-2 chr1 107756100 107756364 + 1 NA intron (NM_006113, intron 11 of 26) intron (NM_006113, intron 11 of 26) -67733 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 181.5-35 chr2 84689602 84689899 + 1 NA intron (NM_001370, intron 45 of 76) MLT1G|LTR|ERVL-MaLR 173295 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 188.5-33 chr22 49708234 49708466 + 1 NA Intergenic MER21B|LTR|ERVL -50831 NR_110522 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 277.75-5 chr2 63541940 63542309 + 1 NA intron (NR_148705, intron 1 of 16) UCON8|DNA|DNA 46353 NM_015910 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 330.5-5 chr20 4917763 4918138 + 1 NA intron (NM_005116, intron 3 of 16) intron (NM_005116, intron 3 of 16) 83560 NM_005116 9962 Hs.516866 NM_005116 ENSG00000089057 SLC23A2 NBTL1|SLC23A1|SVCT2|YSPL2 solute carrier family 23 member 2 protein-coding 177.5-51 chr7 81817790 81818108 + 1 NA Intergenic L1M5|LINE|L1 -47902 NM_001010932 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 322.25-8 chr9 7055469 7056268 + 1 NA intron (NM_001353997, intron 17 of 22) intron (NM_001353997, intron 17 of 22) 298518 NR_148679 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 222.5-59 chrX 105376411 105376820 + 1 NA intron (NM_017416, intron 5 of 10) intron (NM_017416, intron 5 of 10) -155922 NM_001291277 56157 Hs.567543 NM_031274 ENSG00000268629 TEX13A - testis expressed 13A protein-coding 208.5-6 chr10 74473894 74474152 + 1 NA intron (NM_001369124, intron 6 of 9) L1MD3|LINE|L1 55301 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 184.25-28 chr19 30836437 30836777 + 1 NA Intergenic Intergenic -330903 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 253.5-14 chr3 172842 173173 + 1 NA Intergenic Intergenic -23589 NM_001253387 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 160.75-39 chr15 57914318 57914529 + 1 NA Intergenic Intergenic 99600 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 274.75-3 chr10 92500120 92500666 + 1 NA intron (NR_136399, intron 11 of 25) L1MB2|LINE|L1 -2632 NM_001165946 3416 Hs.500546 NM_004969 ENSG00000119912 IDE INSULYSIN insulin degrading enzyme protein-coding 252.25-18 chr8 133852415 133852701 + 1 NA Intergenic Intergenic -33938 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 205.5-28 chr22 26109571 26109948 + 1 NA Intergenic Intergenic -59703 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 569.25 chr4 33483340 33484674 + 1 NA Intergenic LTR79|LTR|ERVL 555886 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 216.25-33 chr9 22486354 22486637 + 1 NA Intergenic Intergenic 39671 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 313.25 chr13 68899704 68900221 + 1 NA Intergenic Intergenic -14637 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 185.25-17 chr13 48323286 48323711 + 1 NA intron (NM_000321, intron 2 of 26) L1M4|LINE|L1 19751 NM_000321 5925 Hs.408528 NM_000321 ENSG00000139687 RB1 OSRC|PPP1R130|RB|p105-Rb|pRb|pp110 RB transcriptional corepressor 1 protein-coding 181.75-55 chr5 123452074 123452398 + 1 NA Intergenic Intergenic -28644 NM_153223 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 241.5-18 chr4 46008478 46008758 + 1 NA Intergenic Intergenic 115436 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 289.25-15 chr6 164650465 164650816 + 1 NA Intergenic L1MEg|LINE|L1 171423 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 354.5-7 chr8 129273025 129273497 + 1 NA Intergenic Intergenic -32021 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 187.75-41 chr20 31053908 31054269 + 1 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -203576 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 166.75-41 chr2 82381516 82381756 + 1 NA Intergenic Intergenic -475167 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 303.75-9 chr7 7592594 7593186 + 1 NA intron (NR_163250, intron 8 of 11) MER1A|DNA|hAT-Charlie 24864 NM_001370078 54468 Hs.520215 NM_019005 ENSG00000164654 MIOS MIO|Sea4|Yulink meiosis regulator for oocyte development protein-coding 237.5-24 chr4 134922558 134922978 + 1 NA Intergenic Intergenic 200791 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 182.25-35 chr3 21520835 21521119 + 1 NA intron (NM_024697, intron 3 of 7) intron (NM_024697, intron 3 of 7) -21812 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 238.25-32 chrX 127133675 127134059 + 1 NA Intergenic L1MA1|LINE|L1 314138 NM_001122716 100130613 Hs.130370 NM_001122716 ENSG00000183631 PRR32 CXorf64 proline rich 32 protein-coding 235.5-27 chr5 53929417 53929856 + 1 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) 21963 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 242.5-13 chr18 73776506 73776786 + 1 NA Intergenic L1M5|LINE|L1 371188 NM_152676 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 431.25 chr13 101681980 101682892 + 1 NA intron (NM_001271754, intron 6 of 10) intron (NM_001271754, intron 6 of 10) 192484 NM_001271756 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 161.5-83 chr6 39637958 39638243 + 1 NA intron (NM_001289020, intron 4 of 21) intron (NM_001289020, intron 4 of 21) 87308 NM_001289020 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 290.5-17 chr8 87472383 87472693 + 1 NA Intergenic Intergenic 401477 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 315.5-3 chr14 37811334 37811865 + 1 NA intron (NM_001368142, intron 6 of 12) intron (NM_001368142, intron 6 of 12) 39216 NM_001368142 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 216.5 chr1 95747373 95747681 + 1 NA Intergenic L1MC|LINE|L1 237411 NR_110622 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 204.25-16 chr16 81378681 81379089 + 1 NA 3' UTR (NM_022041, exon 11 of 11) 3' UTR (NM_022041, exon 11 of 11) -6133 NR_039871 100616150 NR_039871 ENSG00000284473 MIR4720 - microRNA 4720 ncRNA 299.25-9 chr3 7776049 7776631 + 1 NA Intergenic MIR|SINE|MIR 239967 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 246.5-8 chr14 72977464 72977954 + 1 NA intron (NM_178441, intron 5 of 8) intron (NM_178441, intron 5 of 8) 9247 NM_001281735 53349 Hs.335106 NM_021260 ENSG00000165861 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger FYVE-type containing 1 protein-coding 181.75-9 chr10 15603141 15603465 + 1 NA intron (NM_001291494, intron 19 of 28) intron (NM_001291494, intron 19 of 28) 116619 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 361.5-5 chr9 120120243 120120932 + 1 NA Intergenic Intergenic 124463 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 160.25-19 chr12 123404649 123404915 + 1 NA intron (NR_136910, intron 7 of 8) L1ME1|LINE|L1 13507 NM_001324506 387893 Hs.443735 NM_020382 ENSG00000183955 KMT5A PR-Set7|PR/SET07|SET07|SET8|SETD8 lysine methyltransferase 5A protein-coding 239.5-8 chr12 292273 292580 + 1 NA intron (NM_001042603, intron 27 of 27) intron (NM_001042603, intron 27 of 27) -29553 NM_001190997 6540 Hs.504398 NM_016615 ENSG00000010379 SLC6A13 GAT-2|GAT2|GAT3 solute carrier family 6 member 13 protein-coding 171.5-106 chr9 28416795 28417089 + 1 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 302363 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 224.5-21 chr22 34847151 34847436 + 1 NA intron (NR_138042, intron 3 of 4) L1ME1|LINE|L1 150623 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 192.5-23 chr2 55704477 55704790 + 1 NA Intergenic L2a|LINE|L2 -10789 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 174.25-46 chr4 29798037 29798275 + 1 NA Intergenic L2a|LINE|L2 583864 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 269.5-12 chr2 155512378 155512798 + 1 NA Intergenic L1MC4|LINE|L1 742343 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 397.5-6 chr8 112307883 112308570 + 1 NA intron (NM_001363185, intron 46 of 66) intron (NM_001363185, intron 46 of 66) -335267 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 297.75-14 chr5 163459854 163460329 + 1 NA promoter-TSS (NR_138426) promoter-TSS (NR_138426) 11 NM_145266 134492 Hs.140443 NM_145266 ENSG00000170584 NUDCD2 NudCL2 NudC domain containing 2 protein-coding 284.5-10 chr3 105054220 105054680 + 1 NA Intergenic Intergenic -312263 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 174.75-53 chr5 92106878 92107132 + 1 NA Intergenic MLT1I|LTR|ERVL-MaLR -723688 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 200.25-40 chr5 54408119 54408393 + 1 NA intron (NR_126379, intron 3 of 4) L1MC5a|LINE|L1 -47443 NM_006308 8988 Hs.41707 NM_006308 ENSG00000169271 HSPB3 DHMN2C|HMN2C|HSPL27 heat shock protein family B (small) member 3 protein-coding 145.75-15 chr10 122898195 122898358 + 1 NA non-coding (NR_027282, exon 6 of 6) non-coding (NR_027282, exon 6 of 6) -12334 NM_001029888 118670 Hs.369829 NM_001029888 ENSG00000203795 FAM24A - family with sequence similarity 24 member A protein-coding 225.25-15 chr18 40453178 40453529 + 1 NA Intergenic L2a|LINE|L2 387067 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 232.5-50 chr8 102236405 102236753 + 1 NA intron (NM_015713, intron 1 of 8) intron (NM_015713, intron 1 of 8) 2252 NM_001172477 50484 Hs.512592 NM_015713 ENSG00000048392 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding 152.75-18 chr11 55929553 55929709 + 1 NA Intergenic L1MB7|LINE|L1 6769 NM_006637 10798 Hs.533706 NM_006637 ENSG00000167825 OR5I1 HSOlf1|OLF1 olfactory receptor family 5 subfamily I member 1 protein-coding 180.75-27 chr18 56256196 56256487 + 1 NA Intergenic MIR|SINE|MIR -65079 NR_148972 642484 NR_148972 ENSG00000206129 LOC642484 - uncharacterized LOC642484 ncRNA 223.5-6 chr10 51638535 51638953 + 1 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 60851 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 203.75-24 chr3 60920212 60920554 + 1 NA intron (NR_148922, intron 3 of 3) intron (NR_148922, intron 3 of 3) -302513 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 191.75-22 chr13 82029090 82029365 + 1 NA Intergenic Intergenic -802244 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 352.75 chr11 77404497 77405342 + 1 NA intron (NM_001128620, intron 1 of 15) L2a|LINE|L2 69144 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 242.25-3 chr10 29788354 29788621 + 1 NA Intergenic L1MD1|LINE|L1 -51551 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 286.5-16 chr7 44183534 44183998 + 1 NA intron (NM_001354800, intron 1 of 10) intron (NM_001354800, intron 1 of 10) 5673 NM_001354800 2645 Hs.1270 NM_000162 ENSG00000106633 GCK FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2 glucokinase protein-coding 300.5-14 chr6 80628088 80628681 + 1 NA Intergenic L1M1|LINE|L1 521713 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 188.5-68 chr8 73478999 73479433 + 1 NA intron (NM_001164383, intron 8 of 9) L1MC5|LINE|L1 59142 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 306.25-6 chr11 85438534 85439009 + 1 NA intron (NM_001142699, intron 3 of 27) L1MD2|LINE|L1 188499 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 171.25-48 chr5 130909227 130909541 + 1 NA Intergenic Intergenic 255872 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 369.5-2 chr5 19124552 19125581 + 1 NA Intergenic Intergenic 761206 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 225.5-16 chr17 63189762 63190237 + 1 NA intron (NM_025185, intron 4 of 25) L1MB7|LINE|L1 223764 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 416.75-2 chr15 80767572 80768352 + 1 NA Intergenic L2a|LINE|L2 -11408 NM_001293304 57214 Hs.459088 NM_018689 ENSG00000103888 CEMIP CCSP1|HYBID|KIAA1199|TMEM2L cell migration inducing hyaluronidase 1 protein-coding 289.25-3 chr17 63394524 63395061 + 1 NA intron (NM_025185, intron 16 of 25) intron (NM_025185, intron 16 of 25) 45475 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 183.5-18 chr14 64943931 64944150 + 1 NA intron (NM_001202559, intron 3 of 13) intron (NM_001202559, intron 3 of 13) -1295 NR_138078 2877 Hs.2704 NM_002083 ENSG00000176153 GPX2 GI-GPx|GPRP|GPRP-2|GPx-2|GPx-GI|GSHPX-GI|GSHPx-2 glutathione peroxidase 2 protein-coding 280.25-12 chr7 80270849 80271545 + 1 NA Intergenic Intergenic 103242 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 195.25-65 chr9 34079332 34079560 + 1 NA Intergenic Intergenic -30247 NM_001370059 55833 Hs.493739 NM_018449 ENSG00000137073 UBAP2 UBAP-2 ubiquitin associated protein 2 protein-coding 172.75-19 chr12 60574964 60575171 + 1 NA Intergenic Intergenic 885697 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 194.75-37 chr4 124376958 124377268 + 1 NA Intergenic L1ME3A|LINE|L1 181321 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 161.5-28 chr13 36274338 36274631 + 1 NA intron (NM_001198910, intron 2 of 15) intron (NM_001198910, intron 2 of 15) 23330 NM_001144986 728591 Hs.656745 NM_001144981 ENSG00000242715 CCDC169 C13orf38 coiled-coil domain containing 169 protein-coding 148.5-56 chr21 32924966 32925210 + 1 NA Intergenic L1M6B|LINE|L1 -33800 NR_135522 102724502 Hs.130572 NR_135522 ENSG00000228961 LINC01690 - long intergenic non-protein coding RNA 1690 ncRNA 154.75-31 chr17 56168280 56168644 + 1 NA intron (NM_153228, intron 1 of 16) intron (NM_153228, intron 1 of 16) 14987 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 343.5-6 chr5 30357241 30357755 + 1 NA Intergenic Intergenic 476938 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 268.75-3 chr11 47221304 47221933 + 1 NA intron (NM_001300734, intron 3 of 5) AluSx1|SINE|Alu 6676 NM_001300734 1643 Hs.700338 NM_000107 ENSG00000134574 DDB2 DDBB|UV-DDB2|XPE damage specific DNA binding protein 2 protein-coding 228.5-23 chr17 80467653 80468030 + 1 NA 3' UTR (NM_002522, exon 5 of 5) 3' UTR (NM_002522, exon 5 of 5) 8766 NM_002522 4884 Hs.514556 NM_002522 ENSG00000171246 NPTX1 NP1 neuronal pentraxin 1 protein-coding 262.25-15 chr6 70576565 70576914 + 1 NA intron (NM_145267, intron 1 of 2) MIRb|SINE|MIR 9809 NM_145267 135154 Hs.418495 NM_145267 ENSG00000154079 SDHAF4 C6orf57|Sdh8 succinate dehydrogenase complex assembly factor 4 protein-coding 258.5-18 chr4 30523844 30524277 + 1 NA Intergenic L1PB4|LINE|L1 -196309 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 279.75-10 chr20 25268337 25268885 + 1 NA intron (NM_002862, intron 2 of 19) intron (NM_002862, intron 2 of 19) 20526 NM_002862 5834 Hs.368157 NM_002862 ENSG00000100994 PYGB GPBB glycogen phosphorylase B protein-coding 193.5-15 chr12 46959535 46959980 + 1 NA Intergenic Intergenic -119846 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 165.75-81 chr5 99036961 99037368 + 1 NA Intergenic Intergenic -107450 NM_001364113 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 311.5-8 chr2 131413024 131413638 + 1 NA Intergenic Intergenic 10430 NR_036499 389043 Hs.586791 NR_036499 LINC01120 - long intergenic non-protein coding RNA 1120 ncRNA 393.25 chr12 34635595 34636412 + 1 NA Intergenic ALR/Alpha|Satellite|centr 613507 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 218.5-42 chr8 107692356 107692725 + 1 NA Intergenic UCON26|Unknown|Unknown -194622 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 160.25-46 chr3 109002786 109003057 + 1 NA intron (NM_014429, intron 20 of 27) L2c|LINE|L2 -49042 NM_005459 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 482.75 chr20 8034078 8034987 + 1 NA Intergenic L1MA5|LINE|L1 -14771 NM_021156 56255 Hs.169358 NM_021156 ENSG00000125827 TMX4 DJ971N18.2|PDIA14|TXNDC13 thioredoxin related transmembrane protein 4 protein-coding 156.75-5 chr1 118746059 118746443 + 1 NA Intergenic Intergenic 242092 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 213.5-12 chr12 16785432 16785803 + 1 NA Intergenic Intergenic -177403 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 338.5-3 chr13 101523612 101524179 + 1 NA intron (NM_001271756, intron 1 of 9) intron (NM_001271756, intron 1 of 9) 33943 NM_001271756 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 218.5-40 chr8 63096687 63097119 + 1 NA Intergenic L1MB3|LINE|L1 -10850 NM_000370 7274 Hs.69049 NM_000370 ENSG00000137561 TTPA ATTP|AVED|TTP1|alphaTTP alpha tocopherol transfer protein protein-coding 279.5 chr10 52158027 52158356 + 1 NA intron (NM_001098512, intron 8 of 17) intron (NM_001098512, intron 8 of 17) 155937 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 185.25-79 chr8 120341914 120342359 + 1 NA intron (NM_021110, intron 43 of 47) intron (NM_021110, intron 43 of 47) 103014 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 196.5-33 chr3 104006033 104006237 + 1 NA Intergenic L2a|LINE|L2 -482019 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 294.75-5 chr17 65030078 65030580 + 1 NA intron (NM_006572, intron 2 of 3) intron (NM_006572, intron 2 of 3) 25445 NM_001282425 10672 Hs.515018 NM_006572 ENSG00000120063 GNA13 G13 G protein subunit alpha 13 protein-coding 213.25-18 chr18 6760123 6760423 + 1 NA intron (NM_001366230, intron 1 of 17) intron (NM_001366230, intron 1 of 17) -30411 NR_134645 101927168 Hs.242240 NR_134645 LOC101927168 - uncharacterized LOC101927168 ncRNA 256.75-22 chr6 134156933 134157512 + 1 NA Intergenic Intergenic 17644 NM_005627 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 255.5-38 chr7 103541495 103541960 + 1 NA intron (NM_005045, intron 43 of 64) intron (NM_005045, intron 43 of 64) -95520 NR_135802 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 180.75-2 chr1 24049460 24049726 + 1 NA Intergenic L1MCa|LINE|L1 62542 NM_152372 127294 Hs.523413 NM_152372 ENSG00000142661 MYOM3 - myomesin 3 protein-coding 155.5-94 chr6 125914723 125914951 + 1 NA intron (NM_001199621, intron 9 of 14) intron (NM_001199621, intron 9 of 14) -4418 NM_001199622 135112 Hs.171426 NM_181782 ENSG00000111912 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 380.5-2 chr6 69491609 69492143 + 1 NA Intergenic MIR|SINE|MIR 304590 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 151.75-75 chr5 8681957 8682224 + 1 NA Intergenic L1MD|LINE|L1 -157642 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 154.5-99 chr9 31150158 31150405 + 1 NA Intergenic L1MEc|LINE|L1 231209 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 148.5-73 chr4 80190848 80191090 + 1 NA intron (NM_020226, intron 1 of 9) intron (NM_020226, intron 1 of 9) 5699 NM_020226 56978 Hs.373642 NM_020226 ENSG00000152784 PRDM8 EPM10|KMT8D|PFM5 PR/SET domain 8 protein-coding 208.75-38 chr8 50156840 50157090 + 1 NA intron (NR_135798, intron 1 of 15) L1ME2|LINE|L1 -7166 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 249.75-21 chr8 124499937 124500345 + 1 NA intron (NM_001146160, intron 7 of 9) AluSg7|SINE|Alu 8435 NR_106903 102466200 NR_106903 ENSG00000284087 MIR6844 hsa-mir-6844 microRNA 6844 ncRNA 255.5-14 chr2 8674045 8674401 + 1 NA intron (NR_110154, intron 1 of 3) L1MDa|LINE|L1 7638 NR_110153 100506299 Hs.439031 NR_110153 ENSG00000235092 ID2-AS1 - ID2 antisense RNA 1 ncRNA 271.5-3 chr12 16774168 16774609 + 1 NA Intergenic L1ME2|LINE|L1 -166174 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 150.5-106 chr6 76412412 76412617 + 1 NA Intergenic Intergenic 181109 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 150.75-28 chr18 8174399 8174713 + 1 NA intron (NM_002845, intron 14 of 30) intron (NM_002845, intron 14 of 30) 192478 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 235.5-21 chr3 103348363 103348679 + 1 NA Intergenic Zaphod|DNA|hAT-Tip100 175595 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 222.75-4 chr11 10309423 10309677 + 1 NA intron (NR_103765, intron 1 of 3) intron (NR_103765, intron 1 of 3) 1237 NR_103765 100130460 Hs.501890 NR_103765 CAND1.11 - uncharacterized LOC100130460 ncRNA 147.5-15 chr11 22982054 22982415 + 1 NA Intergenic Arthur1|DNA|hAT-Tip100 -121760 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 215.5-30 chr2 156638713 156639192 + 1 NA Intergenic Intergenic 202573 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 452.25 chr10 56140031 56140906 + 1 NA Intergenic LTR37B|LTR|ERV1 220791 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 296.5-10 chr3 80778705 80779290 + 1 NA intron (NR_147145, intron 1 of 2) (AT)n|Simple_repeat|Simple_repeat 8293 NR_147145 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 237.25 chr10 32910585 32910972 + 1 NA intron (NM_002211, intron 13 of 15) AluSz|SINE|Alu -9306 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 199.75-2 chr1 95545505 95546000 + 1 NA Intergenic Intergenic 35636 NR_110622 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 268.5-14 chr2 209514601 209514949 + 1 NA intron (NM_001039538, intron 2 of 14) intron (NM_001039538, intron 2 of 14) -64561 NM_001363913 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 245.5-24 chr4 32247194 32247471 + 1 NA Intergenic Intergenic -103706 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 250.75-25 chr6 26640962 26641590 + 1 NA intron (NM_001242798, intron 2 of 2) intron (NM_001242798, intron 2 of 2) 18470 NM_024639 79692 Hs.126280 NM_024639 ENSG00000181315 ZNF322 HCG12|ZNF322A|ZNF388|ZNF489 zinc finger protein 322 protein-coding 294.25-3 chr11 88618712 88619091 + 1 NA intron (NM_001143831, intron 3 of 8) intron (NM_001143831, intron 3 of 8) 114325 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 174.5-58 chr4 55181603 55181891 + 1 NA Intergenic Intergenic -56152 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 251.5-28 chr7 20053973 20054380 + 1 NA intron (NR_110114, intron 1 of 5) intron (NR_110114, intron 1 of 5) 86250 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 164.25-47 chr2 171328226 171328525 + 1 NA intron (NM_001321158, intron 6 of 8) intron (NM_001321158, intron 6 of 8) -97082 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 350.25-6 chr8 103943441 103943981 + 1 NA intron (NR_145711, intron 11 of 21) intron (NR_145711, intron 11 of 21) 124491 NM_001348509 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 264.5-24 chr8 114526391 114526911 + 1 NA Intergenic Intergenic -1089712 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 191.25-55 chr5 106058597 106058801 + 1 NA Intergenic L1MA7|LINE|L1 952315 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 146.25-21 chr12 45759041 45759289 + 1 NA intron (NM_152641, intron 3 of 20) intron (NM_152641, intron 3 of 20) 29456 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 162.75-83 chr8 79128354 79128560 + 1 NA Intergenic Intergenic -203731 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 278.75-12 chr8 87674049 87674427 + 1 NA Intergenic LTR80B|LTR|ERVL 199777 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 166.25-13 chr11 5289702 5290123 + 1 NA Intergenic Intergenic 12034 NM_033179 79339 Hs.679499 NM_033179 ENSG00000183251 OR51B4 HOR5'Beta1 olfactory receptor family 51 subfamily B member 4 protein-coding 223.5-4 chr1 187230409 187230794 + 1 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) 137759 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 212.5-46 chr6 62474466 62474765 + 1 NA Intergenic AluSx1|SINE|Alu -188388 NM_001350622 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 215.25-44 chr8 67322275 67322531 + 1 NA intron (NM_006421, intron 1 of 38) L2c|LINE|L2 21378 NM_006421 10565 Hs.656902 NM_006421 ENSG00000066777 ARFGEF1 ARFGEP1|BIG1|P200 ADP ribosylation factor guanine nucleotide exchange factor 1 protein-coding 173.75-13 chr10 110889832 110890192 + 1 NA intron (NM_001199492, intron 7 of 11) intron (NM_001199492, intron 7 of 11) -8078 NR_039828 100616113 NR_039828 ENSG00000284482 MIR4680 - microRNA 4680 ncRNA 263.5-9 chr13 57730813 57731282 + 1 NA Intergenic Intergenic 99303 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 283.5-11 chr3 62779642 62780188 + 1 NA intron (NM_003716, intron 1 of 29) L3|LINE|CR1 95501 NM_183394 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 293.25-12 chr9 118532983 118533499 + 1 NA Intergenic MIRb|SINE|MIR -146430 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 172.25-6 chr10 97217179 97217584 + 1 NA intron (NR_037909, intron 11 of 14) MADE1|DNA|TcMar-Mariner -31422 NM_003061 6585 Hs.632082 NM_003061 ENSG00000187122 SLIT1 MEGF4|SLIL1|SLIT-1|SLIT3 slit guidance ligand 1 protein-coding 181.75-4 chr1 56154134 56154366 + 1 NA Intergenic Intergenic 209163 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 159.5-11 chr10 53807581 53807746 + 1 NA TTS (NM_001142769) TTS (NM_001142769) -678567 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 288.75-2 chr10 80946690 80947089 + 1 NA Intergenic MER34C|LTR|ERV1 297092 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 149.5-102 chrX 4604070 4604281 + 1 NA Intergenic Intergenic 29397 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 230.5-11 chr15 85715993 85716362 + 1 NA intron (NM_007200, intron 20 of 36) intron (NM_007200, intron 20 of 36) 42548 NR_120366 101929679 Hs.513112 NR_120366 LOC101929679 - uncharacterized LOC101929679 ncRNA 290.25-15 chrX 94198286 94198599 + 1 NA Intergenic Intergenic 524236 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 158.5-71 chr4 35694069 35694340 + 1 NA Intergenic MIR|SINE|MIR 549735 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 222.75-17 chr18 66380536 66380842 + 1 NA Intergenic Intergenic 223401 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 173.5-37 chr2 211962196 211962426 + 1 NA intron (NM_001042599, intron 2 of 26) intron (NM_001042599, intron 2 of 26) 464049 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 150.5-117 chr8 79075338 79075613 + 1 NA Intergenic L1M5|LINE|L1 237946 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 314.5-12 chr5 123714871 123715245 + 1 NA Intergenic L1MA9|LINE|L1 169641 NM_001270572 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 204.25-5 chr12 12314705 12315077 + 1 NA Intergenic MIRb|SINE|MIR 35351 NM_001363613 54682 Hs.591145 NM_018050 ENSG00000111261 MANSC1 9130403P13Rik|LOH12CR3 MANSC domain containing 1 protein-coding 204.5-15 chr17 52639805 52640224 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -222107 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 217.5-31 chr5 141996917 141997316 + 1 NA Intergenic MER44A|DNA|TcMar-Tigger 15911 NM_005471 10007 Hs.633853 NM_005471 ENSG00000113552 GNPDA1 GNP1|GNPDA|GNPI|GPI|HLN glucosamine-6-phosphate deaminase 1 protein-coding 247.25-19 chr6 140891255 140891581 + 1 NA Intergenic Intergenic 207604 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 182.5-38 chr3 20002330 20002599 + 1 NA intron (NR_027694, intron 1 of 3) Tigger3|DNA|TcMar-Tigger 9800 NR_027694 151649 Hs.733161 NM_144714 ENSG00000183977 PP2D1 C3orf48 protein phosphatase 2C like domain containing 1 protein-coding 334.25 chr5 67587826 67588336 + 1 NA Intergenic Intergenic 58708 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 153.5-74 chr4 141589976 141590186 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -46502 NR_037840 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 280.25-9 chr5 19477171 19477722 + 1 NA intron (NM_001349559, intron 12 of 12) intron (NM_001349559, intron 12 of 12) 408826 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 185.75-23 chr15 77295451 77295869 + 1 NA intron (NM_024776, intron 1 of 7) intron (NM_024776, intron 1 of 7) -70256 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 299.25-5 chr14 49262531 49262891 + 1 NA Intergenic Intergenic 323669 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 189.25-6 chr10 17849363 17849642 + 1 NA intron (NM_002438, intron 6 of 29) intron (NM_002438, intron 6 of 29) 4395 NR_030167 574445 NR_030167 ENSG00000207938 MIR511 MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511 microRNA 511 ncRNA 227.5-7 chr13 26954297 26954630 + 1 NA Intergenic Intergenic -171070 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 149.5-5 chr1 173659015 173659254 + 1 NA non-coding (NR_158771, exon 2 of 5) non-coding (NR_158771, exon 2 of 5) 10717 NR_158771 339416 Hs.130054 NM_198493 ENSG00000183831 ANKRD45 CT117 ankyrin repeat domain 45 protein-coding 154.5-6 chr1 108919433 108919642 + 1 NA intron (NM_013296, intron 12 of 14) intron (NM_013296, intron 12 of 14) 30911 NM_001278202 23155 Hs.658489 NM_015127 ENSG00000121940 CLCC1 MCLC chloride channel CLIC like 1 protein-coding 165.75-31 chr13 66390570 66391045 + 1 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) 172557 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 244.25-19 chr4 65903616 65904094 + 1 NA Intergenic L1PB3|LINE|L1 -233360 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 210.25-4 chr1 119802252 119802527 + 1 NA 3' UTR (NM_001159353, exon 3 of 3) 3' UTR (NM_001159353, exon 3 of 3) 9071 NM_032044 83998 Hs.660883 NM_032044 ENSG00000134193 REG4 GISP|REG-IV|RELP regenerating family member 4 protein-coding 223.5-2 chr1 77382789 77383215 + 1 NA intron (NM_012093, intron 6 of 13) intron (NM_012093, intron 6 of 13) 99915 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 152.5-25 chr14 44833347 44833835 + 1 NA Intergenic Intergenic -34465 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 198.75-4 chr10 19589951 19590231 + 1 NA intron (NM_001142308, intron 33 of 39) intron (NM_001142308, intron 33 of 39) 138459 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 263.5-20 chr7 8586977 8587335 + 1 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 153547 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 228.5-6 chr1 174691702 174692069 + 1 NA intron (NM_001366446, intron 15 of 25) intron (NM_001366446, intron 15 of 25) -8654 NM_001366451 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 286.5-13 chr6 63816660 63817070 + 1 NA intron (NR_157848, intron 1 of 1) intron (NR_157848, intron 1 of 1) 10029 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 149.75-64 chr4 92510327 92510502 + 1 NA intron (NM_001286838, intron 1 of 14) L2a|LINE|L2 206015 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 245.75-15 chr4 54545707 54546138 + 1 NA Intergenic Intergenic 61209 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 254.75-15 chr22 33609796 33610165 + 1 NA intron (NM_133642, intron 4 of 14) MSTB|LTR|ERVL-MaLR 94940 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 198.75-48 chr8 108297285 108297617 + 1 NA Intergenic Intergenic -48734 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 400.25-5 chr6 124461690 124462556 + 1 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 179118 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 199.75-22 chr17 71508718 71509026 + 1 NA Intergenic Intergenic -306693 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 255.5-10 chr14 72103716 72103993 + 1 NA intron (NM_001370288, intron 2 of 16) MLT1H|LTR|ERVL-MaLR 170327 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 201.5-8 chr12 13448569 13449002 + 1 NA Intergenic UCON33|DNA|TcMar-Tigger -72040 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 207.25-43 chr4 144291352 144291600 + 1 NA Intergenic Intergenic -150758 NM_002099 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 258.25-9 chr17 59529696 59530177 + 1 NA Intergenic Intergenic -3079 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 210.5-21 chr2 75587449 75587744 + 1 NA Intergenic Intergenic -17877 NM_032181 84141 Hs.302346 NM_032181 ENSG00000115363 EVA1A FAM176A|TMEM166 eva-1 homolog A, regulator of programmed cell death protein-coding 170.5-78 chr8 118318014 118318303 + 1 NA intron (NM_001101676, intron 4 of 4) L1PB3|LINE|L1 -206339 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 152.5-22 chr13 46580619 46580894 + 1 NA intron (NM_001164213, intron 1 of 18) intron (NM_001164213, intron 1 of 18) 27586 NM_015116 23143 Hs.507971 NM_015116 ENSG00000136141 LRCH1 CHDC1|NP81 leucine rich repeats and calponin homology domain containing 1 protein-coding 200.75-18 chr15 86430117 86430363 + 1 NA intron (NM_152336, intron 18 of 24) AluYk2|SINE|Alu -113272 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 206.75-50 chr7 46676180 46676560 + 1 NA Intergenic Arthur1|DNA|hAT-Tip100 20752 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 285.5-4 chr1 110868992 110869494 + 1 NA Intergenic L1PA15|LINE|L1 -1956 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 403.5-5 chr9 27048015 27048545 + 1 NA intron (NM_025103, intron 16 of 19) intron (NM_025103, intron 16 of 19) -42608 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 205.75-32 chr2 56378718 56379103 + 1 NA intron (NM_001080433, intron 5 of 5) intron (NM_001080433, intron 5 of 5) -193140 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 206.25-13 chr13 51853449 51853797 + 1 NA Intergenic Tigger2a|DNA|TcMar-Tigger -8346 NM_031290 83446 Hs.120573 NM_031290 ENSG00000123171 CCDC70 - coiled-coil domain containing 70 protein-coding 204.75-42 chr4 158780064 158780475 + 1 NA intron (NM_001346043, intron 1 of 15) intron (NM_001346043, intron 1 of 15) 11243 NM_020840 57600 Hs.652441 NM_020840 ENSG00000052795 FNIP2 FNIPL|MAPO1 folliculin interacting protein 2 protein-coding 276.25-5 chr14 81755206 81755801 + 1 NA Intergenic L1MA8|LINE|L1 -12365 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 317.75-3 chr2 52912010 52912347 + 1 NA Intergenic Intergenic -209563 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 268.25-14 chr20 45712994 45713521 + 1 NA Intergenic L1M5|LINE|L1 -8077 NR_037411 100500897 NR_037411 ENSG00000266071 MIR3617 - microRNA 3617 ncRNA 234.5-26 chr8 9567743 9568120 + 1 NA intron (NM_003747, intron 1 of 26) L1MB3|LINE|L1 12019 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 212.75-30 chr5 159279911 159280332 + 1 NA intron (NM_145049, intron 9 of 10) intron (NM_145049, intron 9 of 10) 16831 NM_145049 134510 Hs.591733 NM_145049 ENSG00000164332 UBLCP1 CPUB1 ubiquitin like domain containing CTD phosphatase 1 protein-coding 168.75-60 chr20 53856424 53856765 + 1 NA Intergenic LTR8|LTR|ERV1 19115 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 216.5-47 chr9 19480328 19480638 + 1 NA Intergenic Intergenic 71474 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 306.75-6 chr17 44300174 44300864 + 1 NA non-coding (NR_110802, exon 4 of 4) non-coding (NR_110802, exon 4 of 4) 7912 NR_110802 101926996 Hs.666688 NR_110802 RUNDC3A-AS1 - RUNDC3A antisense RNA 1 ncRNA 276.5-10 chr4 130031880 130032346 + 1 NA Intergenic MER76|LTR|ERVL 260494 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 224.5-20 chr21 26507690 26508053 + 1 NA intron (NR_135516, intron 3 of 3) intron (NR_135516, intron 3 of 3) 65415 NM_052954 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 194.25-32 chr4 79495497 79495780 + 1 NA intron (NR_038826, intron 2 of 3) intron (NR_038826, intron 2 of 3) 3045 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 213.25-16 chr17 51435872 51436304 + 1 NA intron (NR_146897, intron 1 of 2) (T)n|Simple_repeat|Simple_repeat 661 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 152.5-88 chr5 55758050 55758454 + 1 NA intron (NM_024415, intron 3 of 21) L1M5|LINE|L1 -8633 NM_001166534 54514 Hs.223581 NM_019039 ENSG00000152670 DDX4 VASA DEAD-box helicase 4 protein-coding 163.25-83 chr8 89293752 89294011 + 1 NA Intergenic L2a|LINE|L2 463830 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 219.5-19 chr4 55915579 55916077 + 1 NA Intergenic Intergenic -33117 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 274.25-3 chr15 61787555 61788043 + 1 NA Intergenic Intergenic 57881 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 343.25-6 chr9 28471923 28472712 + 1 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 246988 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 195.5-74 chr9 23475795 23476178 + 1 NA Intergenic MIRb|SINE|MIR 196413 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 165.75-76 chr5 24246919 24247261 + 1 NA Intergenic Intergenic 295742 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 255.5-2 chr1 81760044 81760637 + 1 NA intron (NM_001297704, intron 1 of 20) intron (NM_001297704, intron 1 of 20) -40036 NM_001366005 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 224.75-19 chr17 72981147 72981377 + 1 NA intron (NM_001352692, intron 4 of 9) MER33|DNA|hAT-Charlie 111426 NM_139177 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 408.75-2 chr15 76622948 76623618 + 1 NA intron (NR_148227, intron 21 of 32) L1P4|LINE|L1 36636 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 279.25-4 chr14 56032710 56033419 + 1 NA Intergenic L1MEi|LINE|L1 -85347 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 282.5-16 chr8 106129470 106130127 + 1 NA Intergenic Intergenic -69295 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 197.5-19 chr14 71662478 71662888 + 1 NA intron (NM_001354286, intron 11 of 24) intron (NM_001354286, intron 11 of 24) 76385 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 194.5-14 chr11 84081321 84081570 + 1 NA intron (NM_001142699, intron 10 of 27) intron (NM_001142699, intron 10 of 27) 191835 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 232.5-8 chr12 22172246 22172533 + 1 NA Intergenic Intergenic 126171 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 175.5-11 chr10 89945108 89945408 + 1 NA intron (NR_110655, intron 3 of 3) HAL1|LINE|L1 12115 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 214.75-48 chr7 137272828 137273265 + 1 NA intron (NM_001321387, intron 1 of 4) intron (NM_001321387, intron 1 of 4) -4191 NM_001321386 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 238.5-15 chr14 26054272 26054540 + 1 NA Intergenic Intergenic 499024 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 231.75-23 chr5 63405969 63406367 + 1 NA Intergenic L1MA10|LINE|L1 556124 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 230.5 chr1 8453876 8454273 + 1 NA intron (NM_001042681, intron 11 of 22) intron (NM_001042681, intron 11 of 22) 29429 NR_125999 102724552 Hs.568612 NR_125999 RERE-AS1 - RERE antisense RNA 1 ncRNA 151.75-83 chr5 145326217 145326501 + 1 NA Intergenic L1M5|LINE|L1 508983 NM_138492 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 289.25-9 chr3 94991935 94992516 + 1 NA TTS (NR_015400) TTS (NR_015400) 53962 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 367.25-4 chr4 61034376 61034856 + 1 NA Intergenic Intergenic -109040 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 290.75-2 chr14 66554571 66555214 + 1 NA intron (NM_001024218, intron 1 of 21) intron (NM_001024218, intron 1 of 21) 47485 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 345.5-2 chr14 62384474 62385083 + 1 NA Intergenic L1ME2|LINE|L1 -244805 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 151.75-44 chr2 13493221 13493469 + 1 NA Intergenic L1MA9|LINE|L1 -486332 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 306.5-6 chr5 35879316 35879739 + 1 NA TTS (NM_002185) TTS (NM_002185) 22636 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 157.5-84 chr5 161602793 161602992 + 1 NA Intergenic Intergenic -54488 NM_000813 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 148.5-20 chr12 40307401 40307598 + 1 NA intron (NM_198578, intron 28 of 50) intron (NM_198578, intron 28 of 50) 82502 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 185.5-26 chr14 52275387 52275682 + 1 NA 3' UTR (NM_000953, exon 2 of 2) 3' UTR (NM_000953, exon 2 of 2) 7836 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 204.75-53 chr8 27282963 27283308 + 1 NA Intergenic MIRc|SINE|MIR -24731 NM_001283053 81551 Hs.201058 NM_030795 ENSG00000015592 STMN4 RB3 stathmin 4 protein-coding 154.25-57 chr4 15435308 15435481 + 1 NA intron (NM_031911, intron 1 of 2) intron (NM_031911, intron 1 of 2) 7361 NM_031911 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 247.75-14 chr18 75608687 75609192 + 1 NA Intergenic LTR37A|LTR|ERV1 103464 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 193.25-15 chr11 112386566 112386995 + 1 NA Intergenic AluY|SINE|Alu -95452 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 203.5-67 chr7 8972782 8973046 + 1 NA Intergenic L1M3|LINE|L1 539305 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 223.5-33 chr5 60533895 60534211 + 1 NA intron (NR_024617, intron 3 of 3) MSTD|LTR|ERVL-MaLR -37767 NM_001364599 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 259.75-15 chr5 84285118 84285460 + 1 NA intron (NM_001278642, intron 1 of 9) Charlie23a|DNA|hAT-Charlie 99578 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 291.25-4 chr14 35193761 35194092 + 1 NA intron (NM_014672, intron 5 of 7) intron (NM_014672, intron 5 of 7) 71374 NM_001256679 9692 Hs.458487 NM_014672 ENSG00000100890 PRORP KIAA0391|MRPP3 protein only RNase P catalytic subunit protein-coding 146.25-59 chr3 36284295 36284593 + 1 NA Intergenic L1ME3D|LINE|L1 -96043 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 208.25-19 chr14 47590373 47590867 + 1 NA intron (NM_001113498, intron 1 of 16) L1MA3|LINE|L1 84334 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 175.25-72 chr8 118399916 118400379 + 1 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -220854 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 150.5-125 chr9 29387699 29387960 + 1 NA Intergenic L1M4|LINE|L1 -174228 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 151.25-88 chr8 14770851 14771299 + 1 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 82435 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 274.5-11 chr2 11974665 11975165 + 1 NA Intergenic L1MA4A|LINE|L1 -32201 NR_110197 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 204.75-4 chr1 100173403 100173870 + 1 NA intron (NM_144620, intron 1 of 9) L1M5|LINE|L1 4637 NM_001256385 127495 Hs.44277 NM_144620 ENSG00000122477 LRRC39 - leucine rich repeat containing 39 protein-coding 301.5-13 chr6 42737900 42738251 + 1 NA Intergenic L1MA3|LINE|L1 8028 NM_003192 6903 Hs.75064 NM_003192 ENSG00000124659 TBCC CFC tubulin folding cofactor C protein-coding 228.5-25 chr19 9215816 9216158 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -1116 NM_001005191 125958 Hs.446910 NM_001005191 ENSG00000174667 OR7D4 OR19-7|OR19-B|OR19B|OR7D4P|hg105 olfactory receptor family 7 subfamily D member 4 protein-coding 201.5-34 chr22 38689572 38689840 + 1 NA intron (NM_001360236, intron 2 of 4) intron (NM_001360236, intron 2 of 4) 7749 NM_020243 56993 Hs.595072 NM_020243 ENSG00000100216 TOMM22 1C9-2|MST065|MSTP065|TOM22 translocase of outer mitochondrial membrane 22 protein-coding 275.75 chr1 97828284 97828606 + 1 NA intron (NM_000110, intron 2 of 22) intron (NM_000110, intron 2 of 22) 31524 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 281.5-4 chr10 9369340 9370095 + 1 NA Intergenic L1M5|LINE|L1 -74124 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 233.5 chr12 5263788 5264137 + 1 NA Intergenic Intergenic -20811 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 156.25-29 chr16 66599711 66599889 + 1 NA Intergenic HSMAR2|DNA|TcMar-Mariner -4196 NM_144601 123920 Hs.298198 NM_144601 ENSG00000140931 CMTM3 BNAS2|CKLFSF3 CKLF like MARVEL transmembrane domain containing 3 protein-coding 200.75-27 chr2 107171091 107171578 + 1 NA intron (NR_049853, intron 2 of 3) L1MC3|LINE|L1 178191 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 218.5-28 chr4 60002887 60003300 + 1 NA Intergenic Intergenic -919526 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 146.25-95 chr8 71353681 71353983 + 1 NA intron (NM_001370336, intron 4 of 17) intron (NM_001370336, intron 4 of 17) 2874 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 280.5-9 chr4 116233865 116234570 + 1 NA Intergenic Intergenic -65508 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 183.5-43 chr3 75882388 75882655 + 1 NA Intergenic L1PB4|LINE|L1 -96972 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 357.75-3 chr2 163350681 163351318 + 1 NA Intergenic Intergenic 385009 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 255.25-19 chr4 47330801 47331154 + 1 NA intron (NM_000812, intron 5 of 8) intron (NM_000812, intron 5 of 8) 132725 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 268.5-25 chr8 105458081 105458636 + 1 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 138815 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 249.25-3 chr12 73362076 73362519 + 1 NA Intergenic Intergenic 203107 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 223.25-20 chr3 77507669 77508016 + 1 NA intron (NM_001290039, intron 5 of 26) intron (NM_001290039, intron 5 of 26) 409830 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 220.25-7 chr11 14855820 14856333 + 1 NA intron (NM_000922, intron 12 of 15) THE1D|LTR|ERVL-MaLR 36129 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 203.25-28 chr3 189432678 189433024 + 1 NA Intergenic L1PB4|LINE|L1 -163895 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 307.25 chr1 50585272 50585756 + 1 NA intron (NM_007051, intron 9 of 18) intron (NM_007051, intron 9 of 18) -162071 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 168.5-51 chr2 80712336 80712658 + 1 NA Intergenic Intergenic 399118 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 175.25-71 chr8 113465640 113466045 + 1 NA Intergenic Intergenic -28903 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 291.75-2 chr12 4063626 4064163 + 1 NA Intergenic L1MC1|LINE|L1 -190446 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 217.5-16 chr14 58368843 58369171 + 1 NA intron (NM_002892, intron 23 of 23) HAL1|LINE|L1 -26923 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 215.25-38 chr5 169885454 169885677 + 1 NA intron (NM_001346304, intron 1 of 3) intron (NM_001346304, intron 1 of 3) 94930 NM_001129891 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 269.25-19 chr7 35872247 35872660 + 1 NA intron (NM_001363715, intron 4 of 13) intron (NM_001363715, intron 4 of 13) 71234 NM_001363715 989 Hs.191346 NM_001788 ENSG00000122545 SEPTIN7 CDC10|CDC3|NBLA02942|SEPT7|SEPT7A septin 7 protein-coding 231.5-21 chr3 147999642 147999884 + 1 NA Intergenic L1MEg|LINE|L1 -78396 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 225.5-46 chr6 141184984 141185495 + 1 NA Intergenic Intergenic 501425 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 151.75-3 chr1 99625433 99625635 + 1 NA intron (NR_031666, intron 1 of 4) L2a|LINE|L2 -20579 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 175.25-31 chr18 40009941 40010116 + 1 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -56258 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 271.25-8 chr2 201793551 201794184 + 1 NA Intergenic Intergenic -12562 NM_139158 65061 Hs.348711 NM_139158 ENSG00000138395 CDK15 ALS2CR7|PFTAIRE2|PFTK2 cyclin dependent kinase 15 protein-coding 171.75-87 chr8 85312670 85312939 + 1 NA Intergenic Intergenic 28910 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 269.25-9 chr16 50871550 50871913 + 1 NA Intergenic L1MB5|LINE|L1 -7042 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 237.5-34 chr8 123950715 123951146 + 1 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 89852 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 229.5-16 chr17 60543834 60544122 + 1 NA Intergenic L1MB4|LINE|L1 -17736 NM_006380 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 230.25-3 chr1 55532647 55532980 + 1 NA Intergenic Intergenic 307172 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 307.5-10 chr6 71150815 71151500 + 1 NA Intergenic L1MEj|LINE|L1 -137654 NM_024576 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 236.5-26 chr5 59204091 59204536 + 1 NA intron (NM_006203, intron 2 of 14) intron (NM_006203, intron 2 of 14) 71802 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 204.75-3 chr1 63776682 63777032 + 1 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 2840 NM_001083592 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 184.25-44 chr3 83163390 83163792 + 1 NA Intergenic Intergenic 1177449 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 231.75-8 chr14 47208549 47208889 + 1 NA intron (NM_001113498, intron 3 of 16) intron (NM_001113498, intron 3 of 16) 134527 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 290.5-20 chr8 141330460 141330833 + 1 NA Intergenic Intergenic -9903 NR_024441 731779 Hs.586414 NR_024441 ENSG00000253595 LINC01300 - long intergenic non-protein coding RNA 1300 ncRNA 173.5-53 chr3 100086429 100086651 + 1 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) 27973 NM_001042459 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 194.25-26 chr3 38800858 38801378 + 0.75 NA Intergenic Intergenic -7108 NM_006514 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 164-14 chr11 84026232 84026609 + 0.75 NA intron (NM_001142699, intron 11 of 27) MIR3|SINE|MIR 246860 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 174.25-48 chr4 37251811 37252120 + 0.75 NA intron (NM_001144990, intron 1 of 6) L2a|LINE|L2 7222 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 183-3 chr1 96311433 96311844 + 0.75 NA intron (NR_110693, intron 3 of 5) L1MEg|LINE|L1 62487 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 200.75-48 chr7 16346300 16346730 + 0.75 NA intron (NM_001101417, intron 2 of 8) intron (NM_001101417, intron 2 of 8) 75023 NM_001368197 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 222.25-28 chr4 62925126 62925524 + 0.75 NA Intergenic Intergenic -763560 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 188-21 chr14 48157993 48158529 + 0.75 NA Intergenic Intergenic -363247 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 184-42 chr5 33751330 33751687 + 0.75 NA exon (NM_030955, exon 3 of 24) exon (NM_030955, exon 3 of 24) 140482 NM_030955 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 291.5-3 chr16 82780743 82781280 + 0.75 NA intron (NR_110938, intron 1 of 2) intron (NR_110938, intron 1 of 2) 7692 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 233.5-7 chr19 28310454 28310856 + 0.75 NA Intergenic Intergenic -296033 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 238.5-20 chr2 110639005 110639571 + 0.75 NA intron (NM_001278616, intron 23 of 23) intron (NM_001278616, intron 23 of 23) 18961 NR_132975 106635550 NR_132975 SNORD132 - small nucleolar RNA, C/D box 132 snoRNA 196.25-10 chr12 92053774 92054296 + 0.75 NA intron (NR_132341, intron 1 of 4) L1ME4a|LINE|L1 87678 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 348.25 chr12 22716780 22717365 + 0.75 NA Intergenic L1ME2z|LINE|L1 91901 NM_001039481 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 306.25-8 chr4 47487365 47487857 + 0.75 NA intron (NM_020453, intron 1 of 22) intron (NM_020453, intron 1 of 22) 2336 NM_020453 57205 Hs.437241 NM_020453 ENSG00000145246 ATP10D ATPVD ATPase phospholipid transporting 10D (putative) protein-coding 182.5-77 chr8 47557443 47557712 + 0.75 NA intron (NM_001352958, intron 10 of 21) intron (NM_001352958, intron 10 of 21) -96511 NM_001352959 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 213.25-20 chr2 108107694 108108176 + 0.75 NA Intergenic Intergenic -55180 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 203.5-12 chr12 37833890 37834364 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -482647 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 195.75-53 chr4 73285125 73285423 + 0.75 NA Intergenic MLT2E|LTR|ERVL -26476 NM_198889 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 215.25-41 chr7 89273468 89273951 + 0.75 NA intron (NM_181646, intron 2 of 3) intron (NM_181646, intron 2 of 3) -477972 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 505.25 chr2 198937905 198939239 + 0.75 NA Intergenic L1ME1|LINE|L1 519367 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 192.5-49 chr5 120743877 120744223 + 0.75 NA Intergenic LTR45|LTR|ERV1 212586 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 227-21 chrX 57902871 57903550 + 0.75 NA Intergenic Intergenic 7423 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 161.75-72 chr5 18209478 18209753 + 0.75 NA Intergenic Intergenic 402341 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 212-32 chr6 40212196 40212650 + 0.75 NA Intergenic Intergenic 143583 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 169.75-22 chr11 97117161 97117436 + 0.75 NA Intergenic L2a|LINE|L2 608873 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 171.75-55 chr4 48862570 48862871 + 0.75 NA TTS (NM_017830) TTS (NM_017830) -2517 NR_146806 100861517 Hs.661065 NR_146806 ENSG00000248256 OCIAD1-AS1 - OCIAD1 antisense RNA 1 ncRNA 202.5-38 chr3 28156339 28156862 + 0.75 NA Intergenic AluY|SINE|Alu -85019 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 208-18 chr2 149977139 149977652 + 0.75 NA Intergenic Intergenic -118204 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 188.75-58 chr7 38416969 38417502 + 0.75 NA intron (NM_139316, intron 16 of 19) intron (NM_139316, intron 16 of 19) 75658 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 404.75 chr11 84508532 84509172 + 0.75 NA intron (NM_001142699, intron 7 of 27) L2a|LINE|L2 -191513 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 218.5-13 chr15 82165626 82166077 + 0.75 NA intron (NM_001040610, intron 13 of 17) intron (NM_001040610, intron 13 of 17) 77257 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 205.5-2 chr1 63703324 63703647 + 0.75 NA Intergenic Intergenic -70532 NM_005012 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 250.25-23 chr8 62048988 62049424 + 0.75 NA Intergenic Intergenic 159367 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 225.5-37 chr5 6798468 6799025 + 0.75 NA intron (NR_146281, intron 1 of 1) L1MEg|LINE|L1 2866 NR_146281 109729133 Hs.582455 NR_146281 ENSG00000251365 LINC02236 - long intergenic non-protein coding RNA 2236 ncRNA 347.75-6 chr2 26274497 26275011 + 0.75 NA intron (NM_001281512, intron 5 of 14) intron (NM_001281512, intron 5 of 14) 29815 NM_000183 3032 Hs.515848 NM_000183 ENSG00000138029 HADHB ECHB|MSTP029|MTPB|TP-BETA hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta protein-coding 186.75-22 chr12 55493770 55494289 + 0.75 NA TTS (NM_001005519) TTS (NM_001005519) 1651 NM_001005519 403284 Hs.626886 NM_001005519 ENSG00000205327 OR6C68 - olfactory receptor family 6 subfamily C member 68 protein-coding 230.75-22 chr2 164781737 164782335 + 0.75 NA intron (NM_001365670, intron 2 of 13) intron (NM_001365670, intron 2 of 13) -58713 NR_110574 101929633 Hs.570267 NR_110574 LOC101929633 - uncharacterized LOC101929633 ncRNA 169.25-29 chr2 188481664 188482004 + 0.75 NA intron (NM_016315, intron 3 of 11) Tigger19b|DNA|TcMar-Tigger 184342 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 167-68 chr5 50577729 50578063 + 0.75 NA Intergenic HSMAR2|DNA|TcMar-Mariner -88035 NM_001178055 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 244.75-10 chr16 53328880 53329338 + 0.75 NA TTS (NM_025134) TTS (NM_025134) 42103 NM_001347693 643802 Hs.451336 NM_001207030 LOC643802 - u3 small nucleolar ribonucleoprotein protein MPP10-like protein-coding 295-4 chr4 130910191 130910878 + 0.75 NA Intergenic L1MEg|LINE|L1 534173 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 166.75-10 chr10 54668080 54668415 + 0.75 NA intron (NM_001354404, intron 4 of 34) L2a|LINE|L2 -60290 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 157.75-77 chr4 92195430 92195814 + 0.75 NA Intergenic L1MC1|LINE|L1 81680 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 148.25-84 chr7 11187244 11187441 + 0.75 NA Intergenic Charlie2b|DNA|hAT-Charlie 213470 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 146.75-38 chr17 30381636 30381958 + 0.75 NA intron (NM_001199775, intron 1 of 20) intron (NM_001199775, intron 1 of 20) 1319 NM_001199775 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 248.75-10 chr3 179932659 179933243 + 0.75 NA intron (NM_001349396, intron 1 of 13) L1MA8|LINE|L1 33414 NR_110060 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 179.75-40 chr4 42182994 42183288 + 0.75 NA Intergenic L1M5|LINE|L1 -30486 NM_001159547 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 195.25-43 chr4 93115770 93116402 + 0.75 NA intron (NM_001286838, intron 3 of 14) intron (NM_001286838, intron 3 of 14) -712667 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 186.5-11 chr10 106164384 106164829 + 0.75 NA TTS (NR_134329) TTS (NR_134329) 24441 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 264-11 chr8 121584735 121585252 + 0.75 NA Intergenic AluSx|SINE|Alu -54353 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 187.25-25 chr15 92085418 92085842 + 0.75 NA intron (NR_135775, intron 2 of 10) intron (NR_135775, intron 2 of 10) 231326 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 187.75-56 chr5 30615536 30616078 + 0.75 NA Intergenic L1MB2|LINE|L1 -577879 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 247.25-2 chr1 216894869 216895508 + 0.75 NA intron (NM_001243507, intron 2 of 7) intron (NM_001243507, intron 2 of 7) 44485 NM_001243513 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 198.75-57 chrX 96595036 96595668 + 0.75 NA Intergenic L1MEc|LINE|L1 -89311 NM_007309 1730 Hs.226483 NM_006729 ENSG00000147202 DIAPH2 DIA|DIA2|DRF2|POF|POF2|POF2A diaphanous related formin 2 protein-coding 152.25-95 chr8 88089101 88089372 + 0.75 NA intron (NM_005941, intron 6 of 9) intron (NM_005941, intron 6 of 9) -215221 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 184.5-45 chr2 153232853 153233401 + 0.75 NA Intergenic Charlie8|DNA|hAT-Charlie 245635 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 174-68 chr8 81759068 81759464 + 0.75 NA 3' UTR (NM_152284, exon 5 of 5) 3' UTR (NM_152284, exon 5 of 5) 26818 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 147.75-2 chr1 51654386 51654680 + 0.75 NA intron (NM_001350209, intron 2 of 23) L1MB3|LINE|L1 37441 NM_148908 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 255.75-2 chr1 194041526 194041989 + 0.75 NA Intergenic Intergenic 737012 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 246.25-5 chr1 238656336 238656750 + 0.75 NA Intergenic Intergenic -170526 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 151.25-36 chr2 27412697 27413034 + 0.75 NA Intergenic Intergenic -3274 NM_177983 5496 Hs.643951 NM_177983 ENSG00000115241 PPM1G PP2CG|PP2CGAMMA|PPP2CG protein phosphatase, Mg2+/Mn2+ dependent 1G protein-coding 151.75-27 chr14 54434618 54434999 + 0.75 NA intron (NM_005776, intron 2 of 4) intron (NM_005776, intron 2 of 4) 6566 NM_005776 10175 Hs.294603 NM_005776 ENSG00000100528 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 322.5-8 chr2 139944788 139945655 + 0.75 NA Intergenic Intergenic 641464 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 238.75-27 chr5 134856305 134856782 + 0.75 NA 3' UTR (NM_001135586, exon 2 of 2) 3' UTR (NM_001135586, exon 2 of 2) 10575 NM_001300894 134553 Hs.708536 NM_152409 ENSG00000181904 C5orf24 - chromosome 5 open reading frame 24 protein-coding 248.25-22 chr9 27891397 27891866 + 0.75 NA Intergenic L1M5|LINE|L1 -317765 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 234-13 chr5 42949986 42950582 + 0.75 NA Intergenic Intergenic 43049 NR_104643 643977 Hs.535791 NR_104643 FLJ32255 - uncharacterized LOC643977 ncRNA 218.25-31 chr4 145387420 145387889 + 0.75 NA Intergenic Intergenic -47235 NR_147156 105377466 Hs.405641 NR_147156 ENSG00000272727 LINC02266 - long intergenic non-protein coding RNA 2266 ncRNA 188.25-55 chr6 166130904 166131367 + 0.75 NA Intergenic L1ME2|LINE|L1 33415 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 195.25-59 chr8 108557902 108558205 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 114429 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 213.5-49 chr9 85613268 85613741 + 0.75 NA intron (NM_015239, intron 17 of 25) intron (NM_015239, intron 17 of 25) 128525 NM_015239 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 152.25-49 chr2 162931638 162931984 + 0.75 NA Intergenic Intergenic -93044 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 196-51 chr8 117677201 117677625 + 0.75 NA Intergenic Intergenic 156700 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 230.75-8 chr12 32251183 32251771 + 0.75 NA intron (NR_148725, intron 2 of 9) MLT1D|LTR|ERVL-MaLR 144630 NR_148725 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 147.75-106 chr8 16835265 16835575 + 0.75 NA Intergenic L1M5|LINE|L1 166925 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 177-26 chr2 59672008 59672423 + 0.75 NA Intergenic Intergenic 454507 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 153.25-70 chr20 19110107 19110467 + 0.75 NA Intergenic Intergenic -102355 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 154.25-31 chr13 107259811 107260088 + 0.75 NA intron (NM_001080396, intron 1 of 2) L2c|LINE|L2 61014 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 159.5-57 chr3 191705816 191706175 + 0.75 NA Intergenic L1MA4A|LINE|L1 244832 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 220.5-16 chr16 64810886 64811399 + 0.75 NA Intergenic Intergenic 310921 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 192-3 chr1 163816344 163816819 + 0.75 NA Intergenic LTR16E1|LTR|ERVL -393390 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 173.5-41 chr20 51578753 51579174 + 0.75 NA Intergenic Intergenic -16124 NM_001258292 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 199.75-39 chr3 170037450 170037791 + 0.75 NA promoter-TSS (NM_014373) promoter-TSS (NM_014373) -375 NM_014373 26996 Hs.231320 NM_014373 ENSG00000173890 GPR160 GPCR1|GPCR150 G protein-coupled receptor 160 protein-coding 191.5-36 chr3 76227751 76228240 + 0.75 NA Intergenic Intergenic -442446 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 166.75-28 chr14 86011352 86011628 + 0.75 NA intron (NR_110155, intron 1 of 3) intron (NR_110155, intron 1 of 3) 76812 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 176.25-28 chr15 76236419 76236914 + 0.75 NA intron (NM_000126, intron 9 of 11) intron (NM_000126, intron 9 of 11) 23486 NR_028510 7302 Hs.684881 NR_002721 TYRO3P - TYRO3P protein tyrosine kinase pseudogene pseudo 203.5-64 chr6 129529162 129529577 + 0.75 NA Intergenic Intergenic 180808 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 147.25-104 chr9 101677936 101678315 + 0.75 NA intron (NM_133445, intron 2 of 8) L2a|LINE|L2 60455 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 160.75-79 chr3 181097378 181097748 + 0.75 NA intron (NR_075091, intron 2 of 7) intron (NR_075091, intron 2 of 7) 40883 NR_075091 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 165.25-36 chr3 971987 972337 + 0.75 NA Intergenic LOR1b|LTR|ERV1 -120862 NM_001349359 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 258.25-11 chr19 29660560 29661041 + 0.75 NA Intergenic AluJb|SINE|Alu -4661 NM_024310 79156 Hs.466383 NM_024310 ENSG00000166289 PLEKHF1 APPD|LAPF|PHAFIN1|ZFYVE15 pleckstrin homology and FYVE domain containing 1 protein-coding 232.5-18 chr19 44152688 44153166 + 0.75 NA intron (NM_006630, intron 5 of 5) intron (NM_006630, intron 5 of 5) 11373 NM_001144824 10780 Hs.235992 NM_006630 ENSG00000263002 ZNF234 HZF4|ZNF269 zinc finger protein 234 protein-coding 151-68 chr4 61467332 61467671 + 0.75 NA intron (NM_001371343, intron 2 of 23) GA-rich|Low_complexity|Low_complexity 265329 NM_001371342 178.25-42 chr3 155584439 155584783 + 0.75 NA intron (NM_001349252, intron 5 of 24) intron (NM_001349252, intron 5 of 24) 91732 NM_001130961 23007 Hs.567423 NM_014996 ENSG00000114805 PLCH1 PLCL3 phospholipase C eta 1 protein-coding 176.5-51 chr3 94982524 94982917 + 0.75 NA intron (NR_015400, intron 4 of 7) L1MC3|LINE|L1 44457 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 151-19 chr14 66476976 66477361 + 0.75 NA Intergenic MER63A|DNA|hAT-Blackjack -9203 NR_110307 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 159.25-67 chr6 55883380 55883751 + 0.75 NA Intergenic Intergenic -7975 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 175.25-53 chr5 81093683 81094117 + 0.75 NA intron (NM_006909, intron 10 of 26) intron (NM_006909, intron 10 of 26) -132993 NR_105015 102524628 Hs.737159 NR_105015 ENSG00000251450 RASGRF2-AS1 - RASGRF2 antisense RNA 1 ncRNA 255.5-18 chr21 17805093 17805489 + 0.75 NA intron (NM_001100420, intron 2 of 4) intron (NM_001100420, intron 2 of 4) -12782 NR_038870 246312 Hs.473425 NR_038870 ENSG00000240770 C21orf91-OT1 D21S2089E|NCRNA00285 C21orf91 overlapping transcript 1 ncRNA 154.25-47 chr2 142462410 142462788 + 0.75 NA Intergenic HERV16-int|LTR|ERVL -330898 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 159.75-91 chr8 56817394 56817792 + 0.75 NA Intergenic L1ME1|LINE|L1 176274 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 167.25-45 chr3 9300448 9300986 + 0.75 NA Intergenic MER20|DNA|hAT-Charlie 50961 NR_146969 101927440 NR_146969 ENSG00000235830 SRGAP3-AS4 - SRGAP3 antisense RNA 4 ncRNA 234.75-22 chr5 73600841 73601161 + 0.75 NA Intergenic L1MC2|LINE|L1 -25157 NM_001177693 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 176-18 chr14 79233140 79233462 + 0.75 NA intron (NR_073547, intron 14 of 20) L2c|LINE|L2 33319 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 153.25-28 chr11 119896196 119896519 + 0.75 NA Intergenic L1MD2|LINE|L1 166774 NR_120587 102724301 Hs.637640 NR_120587 ENSG00000254854 LOC102724301 - uncharacterized LOC102724301 ncRNA 220.5-22 chr2 127163503 127164039 + 0.75 NA Intergenic MER4D1|LTR|ERV1 41996 NM_001001665 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 181.75-70 chr9 92372868 92373331 + 0.75 NA intron (NM_001286969, intron 3 of 6) L1M2|LINE|L1 31479 NM_014057 4969 Hs.109439 NM_014057 ENSG00000106809 OGN OG|OIF|SLRR3A osteoglycin protein-coding 283.5-4 chr15 79013781 79014289 + 0.75 NA intron (NM_002891, intron 13 of 27) intron (NM_002891, intron 13 of 27) -8375 NM_153815 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 160.5-48 chr2 49322097 49322351 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger -167697 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 151.5-105 chr9 11516506 11516768 + 0.75 NA Intergenic Intergenic 903431 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 269.75-11 chr4 187621087 187621812 + 0.75 NA intron (NR_110436, intron 2 of 2) intron (NR_110436, intron 2 of 2) 51192 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 169.75-40 chr2 141578530 141578925 + 0.75 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 552974 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 312.5-2 chr12 85656676 85657301 + 0.75 NA Intergenic Intergenic 179421 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 198.5-11 chr11 39220255 39220678 + 0.75 NA Intergenic MIRb|SINE|MIR 571608 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 201.25-49 chr8 84785792 84786348 + 0.75 NA intron (NM_001354322, intron 3 of 6) L1PA10|LINE|L1 80143 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 165.25-29 chr2 214997882 214998138 + 0.75 NA intron (NM_015657, intron 14 of 44) intron (NM_015657, intron 14 of 44) 34076 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 149.5-4 chr1 170155985 170156246 + 0.75 NA intron (NM_001136107, intron 1 of 3) intron (NM_001136107, intron 1 of 3) -4653 NR_036064 100422839 NR_036064 ENSG00000283340 MIR3119-1 - microRNA 3119-1 ncRNA 185-41 chr20 54427175 54427494 + 0.75 NA Intergenic Intergenic -48259 NM_018431 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 202-24 chr2 124096253 124096691 + 0.75 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 71185 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 151.75-65 chr3 178774884 178775272 + 0.75 NA intron (NR_126560, intron 2 of 7) intron (NR_126560, intron 2 of 7) 85327 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 156.5-76 chr4 66856743 66857052 + 0.75 NA Intergenic Intergenic 565103 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 165.75-92 chr7 10883548 10883826 + 0.75 NA Intergenic L1PA15|LINE|L1 56466 NM_002489 4697 Hs.50098 NM_002489 ENSG00000189043 NDUFA4 CI-9k|CI-MLRQ|COXFA4|MLRQ NDUFA4 mitochondrial complex associated protein-coding 195.75-65 chr6 74917802 74918262 + 0.75 NA Intergenic AluSx1|SINE|Alu 210750 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 395.5 chr2 224853331 224854083 + 0.75 NA intron (NM_001290263, intron 16 of 55) intron (NM_001290263, intron 16 of 55) 93342 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 303-7 chr2 160140478 160140938 + 0.75 NA intron (NM_001282390, intron 7 of 13) intron (NM_001282390, intron 7 of 13) 59564 NM_001282390 3694 Hs.470399 NM_000888 ENSG00000115221 ITGB6 AI1H integrin subunit beta 6 protein-coding 179.5-85 chr9 74535168 74535460 + 0.75 NA intron (NM_006914, intron 1 of 9) intron (NM_006914, intron 1 of 9) -36761 NR_125791 103752585 Hs.635501 NR_125791 RORB-AS1 - RORB antisense RNA 1 ncRNA 178.25-62 chr6 48651874 48652242 + 0.75 NA Intergenic L1MDa|LINE|L1 -583369 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 148.25-89 chr7 146518277 146518625 + 0.75 NA Intergenic Intergenic -255820 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 167.25-77 chr8 62579263 62579669 + 0.75 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 330612 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 194.75-15 chr16 52949065 52949538 + 0.75 NA Intergenic L1MB3|LINE|L1 103572 NR_136518 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 152.25-15 chr10 97493882 97494182 + 0.75 NA intron (NM_001289403, intron 1 of 29) AluSp|SINE|Alu 4390 NM_022362 64210 Hs.500721 NM_022362 ENSG00000155229 MMS19 CIAO4|MET18|MMS19L|hMMS19 MMS19 homolog, cytosolic iron-sulfur assembly component protein-coding 204.5-50 chrX 43633422 43633845 + 0.75 NA Intergenic Intergenic -21274 NM_000240 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 206.25-42 chr8 123624456 123624906 + 0.75 NA Intergenic Intergenic 29120 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 182.75-40 chr20 51777947 51778378 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -9772 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 204-36 chr4 142439764 142440205 + 0.75 NA intron (NM_001331040, intron 3 of 25) intron (NM_001331040, intron 3 of 25) 406551 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 257.5-12 chr2 44530094 44530700 + 0.75 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 168450 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 252-4 chr1 198302274 198302890 + 0.75 NA intron (NM_133494, intron 9 of 9) intron (NM_133494, intron 9 of 9) 145584 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 182-2 chr1 189099314 189099683 + 0.75 NA Intergenic LOR1a|LTR|ERV1 1376512 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 147.75-30 chr12 84463342 84463734 + 0.75 NA Intergenic Intergenic 449261 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 159.5-106 chrX 53231469 53231884 + 0.75 NA Intergenic Intergenic -6254 NM_001353984 8242 Hs.631768 NM_004187 ENSG00000126012 KDM5C DXS1272E|JARID1C|MRX13|MRXJ|MRXSCJ|MRXSJ|SMCX|XE169 lysine demethylase 5C protein-coding 205.5-10 chr12 84774690 84775082 + 0.75 NA Intergenic Intergenic 137913 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 180.25-20 chr14 66672315 66672637 + 0.75 NA intron (NM_001024218, intron 1 of 21) L1MCa|LINE|L1 165069 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 215-31 chr7 15389677 15390166 + 0.75 NA intron (NM_001004320, intron 8 of 12) intron (NM_001004320, intron 8 of 12) 172094 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 174-8 chr10 31678356 31678697 + 0.75 NA Intergenic Intergenic 230400 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 213.75-9 chr15 52093259 52093578 + 0.75 NA Intergenic Intergenic 19357 NM_001306168 10017 Hs.283672 NM_020396 ENSG00000137875 BCL2L10 BCL-B|Boo|Diva|bcl2-L-10 BCL2 like 10 protein-coding 214-16 chr18 10866870 10867374 + 0.75 NA intron (NM_022068, intron 5 of 51) intron (NM_022068, intron 5 of 51) -107473 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 182.75-59 chr5 112183933 112184360 + 0.75 NA intron (NM_001347887, intron 17 of 23) intron (NM_001347887, intron 17 of 23) 22661 NR_002922 654322 Hs.689709 NR_002922 ENSG00000238363 SNORA13 ACA13 small nucleolar RNA, H/ACA box 13 snoRNA 338.5 chr1 171495008 171495651 + 0.75 NA intron (NM_015172, intron 1 of 33) L3|LINE|CR1 9799 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 149.5-101 chr9 115098394 115098663 + 0.75 NA intron (NM_002160, intron 1 of 27) intron (NM_002160, intron 1 of 27) 19629 NM_002160 3371 Hs.143250 NM_002160 ENSG00000041982 TNC 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C tenascin C protein-coding 242.25-19 chr6 159393161 159393593 + 0.75 NA intron (NR_125873, intron 2 of 2) intron (NR_125873, intron 2 of 2) 9846 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 243-14 chr20 9210416 9210817 + 0.75 NA intron (NM_001172646, intron 1 of 37) MER102b|DNA|hAT-Charlie -6774 NM_182797 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 248.25-9 chr2 114959916 114960508 + 0.75 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -104361 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 191.25-38 chr2 105388942 105389210 + 0.75 NA intron (NM_201557, intron 1 of 5) intron (NM_201557, intron 1 of 5) 9975 NM_001318895 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 347.25-3 chr15 62010603 62011129 + 0.75 NA intron (NM_001018088, intron 12 of 81) intron (NM_001018088, intron 12 of 81) 49581 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 211.75-16 chr2 159362048 159362374 + 0.75 NA intron (NM_001329858, intron 27 of 36) intron (NM_001329858, intron 27 of 36) -75508 NM_001330278 151525 Hs.20848 NM_152528 ENSG00000196151 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 228.5-15 chr11 105526874 105527245 + 0.75 NA Intergenic L1M5|LINE|L1 -83014 NM_001077243 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 146.75-53 chr2 66363476 66363825 + 0.75 NA Intergenic Intergenic -5322 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 354.5-8 chr9 35421020 35421826 + 0.75 NA intron (NR_003582, intron 2 of 10) L1PB3|LINE|L1 14668 NR_003581 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 237.25-22 chr8 55601554 55602101 + 0.75 NA Intergenic L1M5|LINE|L1 -80849 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 188.25-30 chr22 25013404 25013896 + 0.75 NA Intergenic Intergenic -14324 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 213.75-27 chr5 52749385 52749868 + 0.75 NA Intergenic Intergenic -38290 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 155.75-77 chr4 80451531 80451792 + 0.75 NA intron (NM_152770, intron 2 of 5) intron (NM_152770, intron 2 of 5) 115941 NM_001206997 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 267.25 chr1 222130630 222130998 + 0.75 NA Intergenic L1PA13|LINE|L1 -152294 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 194.5-21 chr14 63491195 63491685 + 0.75 NA intron (NM_001354926, intron 2 of 2) MER33|DNA|hAT-Charlie 16798 NM_001282181 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 152.25-72 chr4 77014502 77014858 + 0.75 NA intron (NM_001306147, intron 6 of 11) L1MA2|LINE|L1 60230 NM_001348133 10983 Hs.518827 NM_006835 ENSG00000118816 CCNI CCNI1|CYC1|CYI cyclin I protein-coding 275-14 chr3 178100164 178100569 + 0.75 NA Intergenic Intergenic 283501 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 218.75-10 chr18 78036781 78037145 + 0.75 NA Intergenic Intergenic -43236 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 146-44 chr2 116130505 116130788 + 0.75 NA Intergenic MER20B|DNA|hAT-Charlie 786831 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 217.75-23 chr2 215884243 215884651 + 0.75 NA Intergenic Intergenic -40911 NR_037195 646324 Hs.655713 NR_037195 ENSG00000235770 LINC00607 - long intergenic non-protein coding RNA 607 ncRNA 183.25-46 chr4 5026778 5027296 + 0.75 NA Intergenic Intergenic -7579 NM_018659 54360 Hs.13872 NM_018659 ENSG00000170891 CYTL1 C17|C4orf4 cytokine like 1 protein-coding 224.75-2 chr1 88139416 88139984 + 0.75 NA Intergenic Intergenic -544444 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 238.5-9 chr10 98944672 98945113 + 0.75 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) -20324 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 192-11 chr10 94002379 94002909 + 0.75 NA intron (NM_001288989, intron 1 of 32) intron (NM_001288989, intron 1 of 32) 8713 NM_001288989 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 148.25-85 chr7 18345632 18345868 + 0.75 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) 55658 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 184.5-43 chr2 80961411 80961725 + 0.75 NA Intergenic L1PA13|LINE|L1 505378 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 166-41 chr2 109631354 109631611 + 0.75 NA Intergenic AluSq2|SINE|Alu 17118 NM_023016 65124 Hs.355455 NM_023016 ENSG00000198142 SOWAHC ANKRD57|C2orf26 sosondowah ankyrin repeat domain family member C protein-coding 233-30 chr6 116419408 116419823 + 0.75 NA intron (NM_001322937, intron 3 of 6) intron (NM_001322937, intron 3 of 6) -41760 NM_001276460 441168 Hs.381220 NM_001010919 ENSG00000188820 CALHM6 C6orf187|FAM26F|INAM|dJ93H18.5 calcium homeostasis modulator family member 6 protein-coding 169.5-93 chr8 82439347 82439704 + 0.75 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -472579 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 194.75-33 chr4 66143666 66144152 + 0.75 NA Intergenic HERV16-int|LTR|ERVL -132915 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 266.75-10 chr2 151813647 151814340 + 0.75 NA intron (NM_001037174, intron 3 of 5) intron (NM_001037174, intron 3 of 5) 14428 NM_177985 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 188.25-26 chr2 22188824 22189186 + 0.75 NA Intergenic Intergenic -347474 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 188-54 chr8 67640073 67640337 + 0.75 NA intron (NM_020361, intron 1 of 10) MER52A|LTR|ERV1 106155 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 149.75-23 chr12 108621234 108621504 + 0.75 NA TTS (NM_003006) TTS (NM_003006) 10712 NM_001206609 6404 Hs.591014 NM_003006 ENSG00000110876 SELPLG CD162|CLA|PSGL-1|PSGL1 selectin P ligand protein-coding 148.5-72 chr4 68278323 68278622 + 0.75 NA Intergenic MER4CL34|LTR|ERV1 -32778 NM_182502 132724 Hs.407122 NM_182502 ENSG00000185873 TMPRSS11B - transmembrane serine protease 11B protein-coding 260.25-9 chr17 32930038 32930804 + 0.75 NA intron (NM_001033504, intron 1 of 6) intron (NM_001033504, intron 1 of 6) 2268 NM_015544 26022 Hs.3447 NM_015544 ENSG00000006042 TMEM98 TADA1 transmembrane protein 98 protein-coding 174.25-22 chr16 50729192 50729608 + 0.75 NA intron (NR_163434, intron 11 of 12) intron (NR_163434, intron 11 of 12) -12650 NM_015247 1540 Hs.578973 NM_015247 ENSG00000083799 CYLD BRSS|CDMT|CYLD1|CYLDI|EAC|MFT|MFT1|SBS|TEM|USPL2 CYLD lysine 63 deubiquitinase protein-coding 278.25-16 chr7 31791919 31792931 + 0.75 NA intron (NM_001322057, intron 17 of 17) intron (NM_001322057, intron 17 of 17) 105210 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 151-84 chr6 136270304 136270537 + 0.75 NA intron (NM_001363659, intron 8 of 11) intron (NM_001363659, intron 8 of 11) 19426 NM_001363659 9774 Hs.486542 NM_014739 ENSG00000029363 BCLAF1 BTF|bK211L9.1 BCL2 associated transcription factor 1 protein-coding 163.5-19 chr11 116291391 116291761 + 0.75 NA Intergenic AluJo|SINE|Alu -347846 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 170.5-59 chr5 42875353 42875653 + 0.75 NA Intergenic Intergenic -63427 NM_001085486 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 150.5-25 chr11 27945459 27945808 + 0.75 NA Intergenic Intergenic -111182 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 374.25-4 chr5 94717913 94718531 + 0.75 NA intron (NM_001297777, intron 16 of 19) L1PA10|LINE|L1 99553 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 261.25-12 chr7 19940258 19940790 + 0.75 NA intron (NR_110114, intron 5 of 5) intron (NR_110114, intron 5 of 5) -166907 NM_001366626 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 187.5-32 chr2 70910408 70910838 + 0.75 NA intron (NM_012476, intron 1 of 2) L1ME3G|LINE|L1 10047 NM_012476 25806 Hs.249170 NM_012476 ENSG00000116035 VAX2 DRES93 ventral anterior homeobox 2 protein-coding 178-39 chr2 211129110 211129472 + 0.75 NA Intergenic Intergenic 511720 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 161.75-89 chr8 86283772 86284113 + 0.75 NA Intergenic HAL1b|LINE|L1 -53561 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 212-2 chr1 35034211 35034592 + 0.75 NA Intergenic L1M5|LINE|L1 -2456 NM_007167 9204 Hs.533986 NM_007167 ENSG00000163867 ZMYM6 Buster2|MYM|ZBED7|ZNF198L4|ZNF258 zinc finger MYM-type containing 6 protein-coding 181-58 chr9 28948445 28948842 + 0.75 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) -59688 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 305-10 chr8 87137385 87138304 + 0.75 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 271429 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 249.75-15 chr4 86280011 86280371 + 0.75 NA intron (NM_001363657, intron 2 of 13) L1PA16|LINE|L1 74453 NM_001318067 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 229-6 chr14 45834139 45834739 + 0.75 NA Intergenic SATR1|Satellite|Satellite -118837 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 147.75-89 chr5 96498905 96499152 + 0.75 NA intron (NR_130776, intron 4 of 4) LTR16A|LTR|ERVL -65780 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 153-32 chr18 61307071 61307408 + 0.75 NA Intergenic Intergenic -26191 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 255.25-14 chr2 80769401 80769945 + 0.75 NA Intergenic Intergenic 456294 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 195.25-27 chr2 115795653 115795975 + 0.75 NA intron (NM_001321912, intron 20 of 25) intron (NM_001321912, intron 20 of 25) 451999 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 185.75-28 chr17 42231755 42232213 + 0.75 NA intron (NM_012448, intron 2 of 18) intron (NM_012448, intron 2 of 18) -37490 NM_032484 84514 Hs.38039 NM_032484 ENSG00000167925 GHDC D11LGP1|LGP1 GH3 domain containing protein-coding 234.5-30 chr9 114105920 114106432 + 0.75 NA Intergenic L1MC5a|LINE|L1 -7119 NM_138424 113220 Hs.28149 NM_138424 ENSG00000136883 KIF12 - kinesin family member 12 protein-coding 176.75-84 chr7 40575421 40575804 + 0.75 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 404327 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 314-2 chr11 48162642 48163412 + 0.75 NA intron (NM_002843, intron 22 of 24) intron (NM_002843, intron 22 of 24) -53783 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 182-53 chr7 68187285 68187706 + 0.75 NA Intergenic ORSL-2b|DNA|hAT-Tip100 167242 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 184.75-66 chr6 35402158 35402546 + 0.75 NA intron (NM_001171818, intron 3 of 8) intron (NM_001171818, intron 3 of 8) -50009 NM_021922 2178 Hs.302003 NM_021922 ENSG00000112039 FANCE FACE|FAE FA complementation group E protein-coding 298-4 chr3 115231068 115231710 + 0.75 NA Intergenic MLT2A1|LTR|ERVL -84101 NM_001348800 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 221-7 chr11 72940766 72941324 + 0.75 NA intron (NM_014824, intron 8 of 19) intron (NM_014824, intron 8 of 19) 126634 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 257.5-21 chr7 64258460 64259094 + 0.75 NA intron (NM_153363, intron 2 of 4) intron (NM_153363, intron 2 of 4) 30303 NM_153363 168417 Hs.520884 NM_153363 ENSG00000197123 ZNF679 - zinc finger protein 679 protein-coding 188.5-40 chr3 115238815 115239300 + 0.75 NA Intergenic Intergenic -91769 NM_001348800 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 152.75-46 chr2 28982797 28983011 + 0.75 NA intron (NM_001321538, intron 1 of 18) L1ME3B|LINE|L1 1606 NM_001321539 165186 Hs.525977 NM_199280 ENSG00000189350 TOGARAM2 FAM179A TOG array regulator of axonemal microtubules 2 protein-coding 208.5-48 chr5 11901235 11901820 + 0.75 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 2919 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 228.75-3 chr10 127674632 127675098 + 0.75 NA Intergenic L1ME3|LINE|L1 -62320 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 150.75-17 chr11 91065729 91065979 + 0.75 NA Intergenic Intergenic -196652 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 311.75-2 chr10 54634106 54634601 + 0.75 NA intron (NR_134503, intron 4 of 5) intron (NR_134503, intron 4 of 5) -26396 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 179-52 chr6 72352530 72352989 + 0.75 NA intron (NM_001350433, intron 21 of 25) MLT1H2|LTR|ERVL-MaLR -13987 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 258.25-14 chr3 104868924 104869621 + 0.75 NA Intergenic Intergenic -497441 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 224.5-37 chr8 118589896 118590480 + 0.75 NA intron (NR_109794, intron 1 of 4) L1MDa|LINE|L1 -30813 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 230.25-15 chr17 71112773 71113123 + 0.75 NA intron (NR_104152, intron 3 of 3) intron (NR_104152, intron 3 of 3) 89231 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 191.5-60 chr8 118049251 118049785 + 0.75 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 62301 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 225.5-35 chr4 37989657 37990134 + 0.75 NA intron (NM_001253912, intron 2 of 20) L3b|LINE|CR1 29497 NM_006607 10744 Hs.668806 NM_006607 ENSG00000250254 PTTG2 - pituitary tumor-transforming 2 protein-coding 197.5-55 chr7 20593910 20594405 + 0.75 NA Intergenic MamGypsy2-I|LTR|Gypsy -21510 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 179.5-38 chr2 83044738 83045013 + 0.75 NA Intergenic AluYm1|SINE|Alu 188072 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 169.5-33 chr15 60545683 60546160 + 0.75 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) 46605 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 212.5-18 chr18 9851847 9852412 + 0.75 NA intron (NM_006868, intron 6 of 6) L1MC5|LINE|L1 -33844 NM_032243 84203 Hs.98712 NM_032243 ENSG00000168454 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 protein-coding 186.75-29 chr14 67205459 67205863 + 0.75 NA intron (NM_173526, intron 5 of 8) intron (NM_173526, intron 5 of 8) 16221 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 180.75-57 chr6 121282708 121283014 + 0.75 NA intron (NR_104452, intron 13 of 35) intron (NR_104452, intron 13 of 35) 51619 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 226.5-14 chr2 4240186 4240632 + 0.75 NA Intergenic Intergenic 266248 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 186.75-57 chr3 116997454 116997997 + 0.75 NA Intergenic MIRc|SINE|MIR 76294 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 245.5-38 chrX 94046850 94047509 + 0.75 NA Intergenic MER4-int|LTR|ERV1 372973 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 163-7 chr10 26508205 26508609 + 0.75 NA intron (NM_019043, intron 6 of 14) intron (NM_019043, intron 6 of 14) 70066 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 314.5 chr10 11238168 11238732 + 0.75 NA intron (NM_001025076, intron 3 of 13) intron (NM_001025076, intron 3 of 13) 73420 NM_001025076 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 147-119 chr9 26331119 26331397 + 0.75 NA Intergenic Intergenic 264583 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 264.25-4 chr12 23494477 23495000 + 0.75 NA Intergenic L4_B_Mam|LINE|RTE-X 89848 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 161-5 chr1 110365463 110365764 + 0.75 NA intron (NM_001201548, intron 6 of 6) intron (NM_001201548, intron 6 of 6) 25413 NM_001319220 9122 Hs.351306 NM_004696 ENSG00000168679 SLC16A4 MCT4|MCT5 solute carrier family 16 member 4 protein-coding 147-24 chr12 50746946 50747246 + 0.75 NA 3' UTR (NM_173602, exon 38 of 38) 3' UTR (NM_173602, exon 38 of 38) -17005 NM_005171 466 Hs.648565 NM_005171 ENSG00000123268 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 217.25-34 chr3 188745132 188745448 + 0.75 NA intron (NM_001167672, intron 6 of 9) L2c|LINE|L2 56509 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 174-39 chr3 101844100 101844475 + 0.75 NA intron (NM_001005474, intron 2 of 12) Charlie1|DNA|hAT-Charlie -5227 NM_031419 64332 Hs.319171 NM_031419 ENSG00000144802 NFKBIZ IKBZ|INAP|MAIL NFKB inhibitor zeta protein-coding 289.25-7 chr2 207514300 207514985 + 0.75 NA Intergenic Intergenic -15320 NR_163947 160.5-111 chr8 82958511 82958833 + 0.75 NA intron (NR_134295, intron 2 of 3) HAL1|LINE|L1 46568 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 157.75-107 chr8 88067345 88067681 + 0.75 NA intron (NM_005941, intron 7 of 9) L1ME1|LINE|L1 -193498 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 202.5-13 chr12 3052757 3053121 + 0.75 NA Intergenic MLT1A1|LTR|ERVL-MaLR -24416 NM_001168320 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 175.25-49 chr5 27353378 27353867 + 0.75 NA Intergenic Intergenic -118670 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 176.5-75 chr6 143014533 143014934 + 0.75 NA intron (NR_038987, intron 2 of 2) intron (NR_038987, intron 2 of 2) 22849 NR_038987 100507489 Hs.486645 NR_038987 LINC01277 - long intergenic non-protein coding RNA 1277 ncRNA 219.25-30 chr21 26990511 26990890 + 0.75 NA Intergenic Intergenic -23612 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 195.25 chr10 36712219 36712669 + 0.75 NA Intergenic L1ME3A|LINE|L1 -413413 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 273-9 chr3 40100140 40100707 + 0.75 NA intron (NM_001284426, intron 1 of 14) intron (NM_001284426, intron 1 of 14) 412 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 195-38 chr4 165705868 165706280 + 0.75 NA intron (NR_121676, intron 3 of 5) intron (NR_121676, intron 3 of 5) 21435 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 202.5-44 chr3 180250639 180251172 + 0.75 NA Intergenic MIRc|SINE|MIR -163268 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 160.25-54 chr4 74188748 74188962 + 0.75 NA intron (NM_001351314, intron 5 of 9) L1MA10|LINE|L1 30737 NM_001351314 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 284.25-13 chrX 91365864 91366472 + 0.75 NA Intergenic Intergenic -68671 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 165.75-73 chr4 82951213 82951599 + 0.75 NA intron (NM_001288996, intron 2 of 10) intron (NM_001288996, intron 2 of 10) -50490 NR_034076 100499177 Hs.728916 NR_034075 ENSG00000251022 THAP9-AS1 - THAP9 antisense RNA 1 ncRNA 291.75-4 chr14 104984330 104985036 + 0.75 NA Intergenic Intergenic -1105 NM_174891 122616 Hs.27183 NM_174891 ENSG00000140104 CLBA1 C14orf79 clathrin binding box of aftiphilin containing 1 protein-coding 171.75-12 chr10 64266746 64267049 + 0.75 NA Intergenic Intergenic -558631 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 292.25 chr12 117859176 117859875 + 0.75 NA intron (NM_173598, intron 2 of 19) AluJo|SINE|Alu 109465 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 195.75-56 chr5 3742759 3743119 + 0.75 NA Intergenic Intergenic 147107 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 224.25-34 chr7 52024255 52024766 + 0.75 NA Intergenic Intergenic -631254 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 149.75-44 chr2 182159421 182159684 + 0.75 NA intron (NM_005019, intron 13 of 14) intron (NM_005019, intron 13 of 14) 82511 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 146.25-26 chr14 33621059 33621381 + 0.75 NA intron (NM_001165893, intron 4 of 10) intron (NM_001165893, intron 4 of 10) -87717 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 160-21 chr14 71270490 71270767 + 0.75 NA Intergenic Intergenic -49848 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 365.25 chr1 219132381 219133055 + 0.75 NA intron (NR_038845, intron 3 of 4) intron (NR_038845, intron 3 of 4) 41070 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 159.75-4 chr1 111693396 111693679 + 0.75 NA intron (NM_001370216, intron 2 of 7) intron (NM_001370216, intron 2 of 7) 28743 NM_001370217 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 211.75-27 chr4 147915480 147915938 + 0.75 NA intron (NM_024605, intron 13 of 22) intron (NM_024605, intron 13 of 22) 133114 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 215.75-3 chr1 82519226 82519756 + 0.75 NA Intergenic LTR16A|LTR|ERVL -383692 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 237.5-20 chr3 47202483 47203037 + 0.75 NA intron (NR_033373, intron 2 of 6) MER101-int|LTR|ERV1 38390 NR_033373 285352 Hs.570631 NR_033373 KIF9-AS1 - KIF9 antisense RNA 1 ncRNA 167.5-11 chr1 220760360 220760660 + 0.75 NA intron (NM_001317338, intron 2 of 7) Charlie2b|DNA|hAT-Charlie 12188 NM_001317338 54996 Hs.369042 NM_017898 ENSG00000117791 MARC2 MOSC2 mitochondrial amidoxime reducing component 2 protein-coding 155.5-75 chr4 104882283 104882565 + 0.75 NA Intergenic Intergenic -263451 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 273-7 chr2 122831929 122832517 + 0.75 NA Intergenic Intergenic 241258 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 272.25-4 chr10 83510852 83511461 + 0.75 NA Intergenic L1ME1|LINE|L1 165933 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 187.5 chr1 28007618 28008141 + 0.75 NA intron (NM_001282562, intron 9 of 16) L1M2|LINE|L1 48417 NM_018053 55113 Hs.55024 NM_018053 ENSG00000158156 XKR8 XRG8|hXkr8 XK related 8 protein-coding 167.5-33 chr17 77784835 77785248 + 0.75 NA Intergenic LTR39|LTR|ERV1 -56482 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 267.25-6 chr20 60636926 60637483 + 0.75 NA Intergenic Intergenic 72642 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 220.5-20 chr2 81084321 81084652 + 0.75 NA Intergenic Intergenic 382460 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 293.5-5 chr2 45460044 45460694 + 0.75 NA intron (NM_018079, intron 16 of 20) intron (NM_018079, intron 16 of 20) 150898 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 178-38 chr2 202610575 202611032 + 0.75 NA Intergenic Intergenic -24166 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 178.75-28 chr2 39694453 39694863 + 0.75 NA intron (NM_152390, intron 1 of 3) MER33|DNA|hAT-Charlie 28741 NM_152390 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 177.25-22 chr14 82560238 82560554 + 0.75 NA Intergenic L1MEg1|LINE|L1 -82236 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 268-4 chr11 115310647 115311389 + 0.75 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -22559 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 160.75-88 chr5 43584049 43584305 + 0.75 NA intron (NR_073113, intron 1 of 2) MER66D|LTR|ERV1 -18498 NM_012343 23530 Hs.482043 NM_012343 ENSG00000112992 NNT GCCD4 nicotinamide nucleotide transhydrogenase protein-coding 148.75-17 chr11 7613106 7613415 + 0.75 NA intron (NM_001351856, intron 6 of 23) intron (NM_001351856, intron 6 of 23) 7526 NM_001256569 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 210.75-34 chr4 110067069 110067471 + 0.75 NA intron (NM_001130721, intron 3 of 4) intron (NM_001130721, intron 3 of 4) 131345 NM_024090 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 306-4 chr11 92690264 92690954 + 0.75 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 225019 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 168.75 chr1 68037567 68037967 + 0.75 NA intron (NR_040077, intron 2 of 9) MIRc|SINE|MIR 13864 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 231.25-2 chr1 91579971 91580377 + 0.75 NA Intergenic Intergenic 79066 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 147.25-73 chr5 82932035 82932371 + 0.75 NA Intergenic Intergenic -72367 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 168.5-100 chr8 127479331 127479732 + 0.75 NA intron (NR_024393, intron 3 of 4) intron (NR_024393, intron 3 of 4) 2608 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 238.75-13 chr16 53136569 53137149 + 0.75 NA intron (NM_001352127, intron 1 of 38) L1ME3A|LINE|L1 5847 NM_001352127 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 190.5-44 chr4 65911084 65911449 + 0.75 NA Intergenic MSTB2|LTR|ERVL-MaLR -240771 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 161.25 chr1 100911240 100911524 + 0.75 NA intron (NM_133496, intron 4 of 10) intron (NM_133496, intron 4 of 10) 15292 NM_133496 148867 Hs.533903 NM_133496 ENSG00000162695 SLC30A7 ZNT7|ZnT-7|ZnTL2 solute carrier family 30 member 7 protein-coding 348.75-6 chr20 50786598 50787096 + 0.75 NA Intergenic AluJb|SINE|Alu -8047 NM_198799 55653 Hs.381178 NM_017843 ENSG00000124243 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 217-5 chr10 31745340 31745756 + 0.75 NA Intergenic AluJr|SINE|Alu 163378 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 148-53 chr2 155104153 155104416 + 0.75 NA Intergenic L1M1|LINE|L1 405589 NM_002239 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 160.5-101 chr6 62017754 62018069 + 0.75 NA intron (NR_146874, intron 3 of 13) intron (NR_146874, intron 3 of 13) 268314 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 157-74 chr5 89358044 89358479 + 0.75 NA intron (NR_136219, intron 7 of 9) L1MEf|LINE|L1 -454156 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 249.5 chr1 109115866 109116423 + 0.75 NA intron (NM_001284352, intron 1 of 20) intron (NM_001284352, intron 1 of 20) 2029 NM_020775 57535 Hs.708190 NM_020775 ENSG00000116299 KIAA1324 EIG121 KIAA1324 protein-coding 233.75-10 chr19 51378423 51378821 + 0.75 NA Intergenic Intergenic -5968 NM_005601 4818 Hs.10306 NM_005601 ENSG00000105374 NKG7 GIG1|GMP-17|p15-TIA-1 natural killer cell granule protein 7 protein-coding 230.75-10 chr13 55102851 55103478 + 0.75 NA Intergenic Intergenic -71290 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 166.75-74 chr5 164982318 164982723 + 0.75 NA Intergenic OldhAT1|DNA|hAT-Ac 512241 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 158-77 chr6 55663057 55663481 + 0.75 NA Intergenic L1PREC2|LINE|L1 -84055 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 147-47 chr2 59657547 59657875 + 0.75 NA Intergenic LTR88b|LTR|Gypsy? 440003 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 310.5-6 chr5 43516751 43517224 + 0.75 NA Intergenic MER50B|LTR|ERV1 -1839 NM_198566 375444 Hs.661641 NM_198566 ENSG00000172244 C5orf34 - chromosome 5 open reading frame 34 protein-coding 146-2 chr1 89898624 89898985 + 0.75 NA intron (NM_001134479, intron 2 of 2) L3|LINE|CR1 76865 NM_018103 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 VRAC subunit D protein-coding 186.75-9 chr10 14787598 14787991 + 0.75 NA Intergenic AluJo|SINE|Alu -12897 NM_001282695 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 209.25-38 chr5 116340227 116340751 + 0.75 NA Intergenic L1MA6|LINE|L1 34081 NR_104675 101927190 Hs.639849 NR_104675 LOC101927190 - uncharacterized LOC101927190 ncRNA 311.75-4 chr5 96390457 96391121 + 0.75 NA 3' UTR (NM_000439, exon 14 of 14) 3' UTR (NM_000439, exon 14 of 14) 41370 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 283.75-9 chr6 140154335 140154942 + 0.75 NA Intergenic Tigger3a|DNA|TcMar-Tigger -50614 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 199-28 chr4 80678401 80678848 + 0.75 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) 342904 NM_001206997 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 229.25-9 chr14 46236680 46237243 + 0.75 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) 172802 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 162.5-28 chr14 63858575 63858930 + 0.75 NA intron (NM_015180, intron 1 of 114) MSTD|LTR|ERVL-MaLR 5748 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 177.75-47 chr3 94866171 94866550 + 0.75 NA Intergenic L1PA13|LINE|L1 -71903 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 200.75-47 chr6 135210069 135210400 + 0.75 NA intron (NR_134962, intron 14 of 14) intron (NR_134962, intron 14 of 14) 28926 NM_001161659 4602 Hs.606320 NM_005375 ENSG00000118513 MYB Cmyb|c-myb|c-myb_CDS|efg MYB proto-oncogene, transcription factor protein-coding 167.5-49 chr2 215955261 215955595 + 0.75 NA intron (NM_018000, intron 2 of 4) intron (NM_018000, intron 2 of 4) 58123 NM_018000 55686 Hs.620391 NM_018000 ENSG00000118242 MREG DSU|WDT2 melanoregulin protein-coding 214-12 chr16 64622760 64623283 + 0.75 NA Intergenic L1PB3|LINE|L1 499042 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 192.25-38 chr2 201737190 201737609 + 0.75 NA intron (NM_020919, intron 12 of 33) intron (NM_020919, intron 12 of 33) -38755 NM_033066 58538 Hs.63085 NM_033066 ENSG00000082126 MPP4 ALS2CR5|DLG6 membrane palmitoylated protein 4 protein-coding 145.75-109 chr7 20111261 20111549 + 0.75 NA intron (NR_110114, intron 1 of 5) intron (NR_110114, intron 1 of 5) 29021 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 200.5-48 chr5 14798533 14798875 + 0.75 NA intron (NM_054027, intron 1 of 11) Tigger1|DNA|TcMar-Tigger 27308 NR_039780 100616271 NR_039780 ENSG00000264792 MIR4637 - microRNA 4637 ncRNA 204.5-49 chr9 93993080 93993729 + 0.75 NA Intergenic MER58A|DNA|hAT-Charlie -37409 NM_001253830 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 236-5 chr11 93168481 93168963 + 0.75 NA intron (NM_152313, intron 6 of 10) intron (NM_152313, intron 6 of 10) 28704 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 179.5-44 chr20 10314836 10315166 + 0.75 NA Intergenic LTR16E2|LTR|ERVL -95495 NR_040710 100131208 Hs.658178 NR_040710 ENSG00000227906 SNAP25-AS1 - SNAP25 antisense RNA 1 ncRNA 166-35 chr2 12845071 12845440 + 0.75 NA Intergenic Intergenic 107888 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 161.75-35 chr2 167776871 167777230 + 0.75 NA Intergenic Intergenic -41622 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 233-35 chr7 91756429 91757029 + 0.75 NA Intergenic AluSx|SINE|Alu 123973 NM_001301134 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 348.75 chr1 110769103 110769790 + 0.75 NA Intergenic L1MB3|LINE|L1 -94506 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 159.25-79 chr8 122224380 122224690 + 0.75 NA Intergenic Intergenic 344109 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 314.5-11 chr5 50796654 50797167 + 0.75 NA intron (NM_024615, intron 12 of 25) intron (NM_024615, intron 12 of 25) 129496 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 282.75-8 chr5 65386372 65386903 + 0.75 NA intron (NR_135689, intron 7 of 25) AluSx1|SINE|Alu 95283 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 213.75-28 chr5 66162901 66163384 + 0.75 NA intron (NM_139168, intron 6 of 12) intron (NM_139168, intron 6 of 12) 18307 NM_139168 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 167-7 chr1 239363015 239363346 + 0.75 NA Intergenic L2b|LINE|L2 -23388 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 176.25-46 chr3 48205285 48205583 + 0.75 NA Intergenic Intergenic 8870 NR_039645 100616407 NR_039645 ENSG00000265483 MIR4443 mir-4443 microRNA 4443 ncRNA 163.25-10 chr1 162581038 162581303 + 0.75 NA intron (NM_003115, intron 4 of 9) intron (NM_003115, intron 4 of 9) 19271 NM_001324114 6675 Hs.492859 NM_003115 ENSG00000117143 UAP1 AGX|AGX1|AGX2|SPAG2 UDP-N-acetylglucosamine pyrophosphorylase 1 protein-coding 150.5-93 chr5 34435935 34436274 + 0.75 NA Intergenic Arthur1B|DNA|hAT-Tip100 -191380 NR_146599 114899 Hs.171929 NM_030945 ENSG00000082196 C1QTNF3 C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3 C1q and TNF related 3 protein-coding 179.5 chr1 60526831 60527151 + 0.75 NA intron (NR_146508, intron 7 of 7) L1MC4|LINE|L1 95694 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 235.5-26 chr4 94678542 94678953 + 0.75 NA Intergenic L2a|LINE|L2 78786 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 171.25-32 chr2 54707557 54707943 + 0.75 NA Intergenic MIR3|SINE|MIR -17262 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 168-66 chr8 91381216 91381474 + 0.75 NA intron (NM_134266, intron 15 of 18) (ATATA)n|Simple_repeat|Simple_repeat 132026 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 179.75-46 chr5 68641481 68641837 + 0.75 NA Intergenic L1MC1|LINE|L1 349082 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 179.5-35 chr2 14271864 14272155 + 0.75 NA intron (NR_103814, intron 2 of 3) intron (NR_103814, intron 2 of 3) 128949 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 212-25 chr3 95939774 95940140 + 0.75 NA Intergenic Intergenic -256764 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 232.25-35 chr9 8376750 8377278 + 0.75 NA intron (NM_130392, intron 22 of 30) intron (NM_130392, intron 22 of 30) 356932 NM_130392 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 253-4 chr19 28524342 28524770 + 0.75 NA intron (NR_110759, intron 5 of 9) PABL_A-int|LTR|ERV1 -82132 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 162.5-33 chr17 5517943 5518217 + 0.75 NA intron (NM_014922, intron 13 of 15) intron (NM_014922, intron 13 of 15) -17074 NM_001162371 728392 Hs.104305 NM_001162371 ENSG00000286190 LOC728392 - uncharacterized LOC728392 protein-coding 199-11 chr15 37339605 37340070 + 0.75 NA Intergenic Intergenic -238526 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 198.25-3 chr10 34509567 34509991 + 0.75 NA intron (NM_001184789, intron 3 of 22) (AACA)n|Simple_repeat|Simple_repeat 305517 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 217.25-22 chr2 45471122 45471629 + 0.75 NA intron (NM_018079, intron 16 of 20) intron (NM_018079, intron 16 of 20) 139892 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 286.5-7 chr2 185288114 185288536 + 0.75 NA Intergenic L1MB7|LINE|L1 -121253 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 174.25-70 chr8 102788542 102788835 + 0.75 NA Intergenic MIRb|SINE|MIR -18134 NR_149020 401472 NR_149020 GASAL1 GASL1 growth arrest associated lncRNA 1 ncRNA 226.5-32 chr9 118040451 118040945 + 0.75 NA Intergenic Intergenic 336295 NM_003266 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 161-35 chr15 76111872 76112189 + 0.75 NA intron (NM_152335, intron 1 of 10) L1MC2|LINE|L1 52045 NM_152335 123591 Hs.661411 NM_152335 ENSG00000169758 TMEM266 C15orf27|HVRP1|HsHVRP1|hTMEM266 transmembrane protein 266 protein-coding 151.75-113 chr9 3455170 3455462 + 0.75 NA intron (NM_001282116, intron 1 of 16) L2c|LINE|L2 34171 NM_001282117 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 194.25-7 chr12 14736835 14737346 + 0.75 NA Intergenic L1PA8|LINE|L1 34041 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 173-2 chr1 41926623 41927089 + 0.75 NA intron (NR_038261, intron 1 of 3) intron (NR_038261, intron 1 of 3) -7934 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 231-2 chr1 222868053 222868776 + 0.75 NA intron (NM_032890, intron 1 of 9) intron (NM_032890, intron 1 of 9) 53375 NM_032890 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 233.25-29 chr8 47445963 47446549 + 0.75 NA intron (NM_001080394, intron 8 of 19) Tigger1|DNA|TcMar-Tigger 185318 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 276-7 chr6 128709416 128709954 + 0.75 NA Intergenic Intergenic -173453 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 313.25-2 chr14 48759336 48759903 + 0.75 NA Intergenic L1PB|LINE|L1 826761 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 246.25-34 chr5 167022424 167022934 + 0.75 NA Intergenic MER102c|DNA|hAT-Charlie -50563 NM_001122679 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 202.25-2 chr10 29288155 29288709 + 0.75 NA promoter-TSS (NM_032517) promoter-TSS (NM_032517) -638 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 184.25-11 chr10 110000802 110001087 + 0.75 NA intron (NM_001320591, intron 1 of 15) intron (NM_001320591, intron 1 of 15) 4571 NM_001320591 120 Hs.501012 NM_001121 ENSG00000148700 ADD3 ADDL|CPSQ3 adducin 3 protein-coding 195.75-17 chr12 94681985 94682480 + 0.75 NA Intergenic Intergenic -31675 NM_020698 57458 Hs.370410 NM_020698 ENSG00000057704 TMCC3 - transmembrane and coiled-coil domain family 3 protein-coding 235-12 chr20 3984390 3985152 + 0.75 NA intron (NM_001134338, intron 1 of 6) intron (NM_001134338, intron 1 of 6) 30787 NM_007219 11237 Hs.547576 NM_007219 ENSG00000101236 RNF24 G1L ring finger protein 24 protein-coding 198.25-27 chr20 52416890 52417259 + 0.75 NA Intergenic Intergenic -203764 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 169-63 chr7 19846880 19847255 + 0.75 NA Intergenic Intergenic -73450 NM_001366626 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 262.25-7 chr17 69135968 69136531 + 0.75 NA exon (NM_080284, exon 4 of 39) exon (NM_080284, exon 4 of 39) 5646 NM_080284 23460 Hs.709514 NM_080284 ENSG00000154262 ABCA6 EST155051 ATP binding cassette subfamily A member 6 protein-coding 175.5-57 chr3 45929663 45930018 + 0.75 NA intron (NM_024513, intron 16 of 17) intron (NM_024513, intron 16 of 17) -13624 NM_006564 10663 Hs.34526 NM_006564 ENSG00000172215 CXCR6 BONZO|CD186|STRL33|TYMSTR C-X-C motif chemokine receptor 6 protein-coding 241-32 chr9 108510890 108511313 + 0.75 NA Intergenic MLT2B3|LTR|ERVL 344885 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 162.25-14 chr12 84219690 84219909 + 0.75 NA Intergenic MER4C|LTR|ERV1 693000 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 175.25-47 chr4 96861766 96862044 + 0.75 NA Intergenic Intergenic -505021 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 301-8 chr5 120121767 120122513 + 0.75 NA Intergenic Intergenic -342138 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 170.25-11 chr12 12531072 12531332 + 0.75 NA intron (NM_030640, intron 1 of 6).2 intron (NM_030640, intron 1 of 6).2 31661 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 181.75-12 chr10 67039031 67039338 + 0.75 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 26918 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 164.5-9 chr11 24856702 24857164 + 0.75 NA intron (NM_001252010, intron 5 of 9) L1PB4|LINE|L1 359880 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 158.5-63 chr22 40535581 40535985 + 0.75 NA intron (NM_020831, intron 3 of 14) intron (NM_020831, intron 3 of 14) -1956 NM_001318139 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 197.75-13 chr11 42472989 42473587 + 0.75 NA Intergenic Intergenic -219598 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 289.75-8 chr16 71965734 71966194 + 0.75 NA intron (NM_181536, intron 15 of 29) intron (NM_181536, intron 15 of 29) 34014 NM_181536 342372 Hs.675286 NM_181536 ENSG00000277481 PKD1L3 - polycystin 1 like 3, transient receptor potential channel interacting protein-coding 189-61 chr8 117169407 117169767 + 0.75 NA intron (NM_173851, intron 6 of 7) MSTA|LTR|ERVL-MaLR 34592 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 233.5-21 chr4 48382677 48383107 + 0.75 NA exon (NM_020846, exon 5 of 8) exon (NM_020846, exon 5 of 8) 41363 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 150.5-44 chr14 88750592 88750953 + 0.75 NA intron (NM_183387, intron 2 of 42) intron (NM_183387, intron 2 of 42) 42181 NM_183387 161436 Hs.325846 NM_183387 ENSG00000165521 EML5 EMAP-2|EMAP-5 EMAP like 5 protein-coding 188.25-54 chr6 153985705 153986177 + 0.75 NA Intergenic Intergenic -24555 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 188.25-29 chr20 35339367 35339776 + 0.75 NA intron (NM_001184977, intron 5 of 7) intron (NM_001184977, intron 5 of 7) -47146 NM_178468 128876 Hs.592149 NM_178468 ENSG00000125998 FAM83C C20orf128|dJ614O4.7 family with sequence similarity 83 member C protein-coding 190.25-7 chr11 76649020 76649551 + 0.75 NA Intergenic Charlie4a|DNA|hAT-Charlie 20653 NR_163259 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 228.75-22 chr7 41991403 41991892 + 0.75 NA intron (NM_000168, intron 10 of 14) intron (NM_000168, intron 10 of 14) 245562 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 174.25-65 chr7 104076408 104076706 + 0.75 NA Intergenic L1M4|LINE|L1 -86899 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 179.75-65 chr8 109290265 109290679 + 0.75 NA intron (NM_032869, intron 4 of 9) intron (NM_032869, intron 4 of 9) 39461 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 202.75-10 chr11 48083755 48084131 + 0.75 NA intron (NM_001098503, intron 1 of 8) Charlie1|DNA|hAT-Charlie -12839 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 172-18 chr12 96581563 96581872 + 0.75 NA intron (NM_001306084, intron 22 of 67) L1ME4a|LINE|L1 92140 NM_001367885 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 294.75-7 chr20 45568417 45569361 + 0.75 NA intron (NM_130896, intron 1 of 5) intron (NM_130896, intron 1 of 5) 10395 NM_130896 90199 Hs.116128 NM_130896 ENSG00000158901 WFDC8 C20orf170|HEL-S-292|WAP8|dJ461P17.1 WAP four-disulfide core domain 8 protein-coding 163.25-44 chr20 24741061 24741385 + 0.75 NA Intergenic AluJb|SINE|Alu -208046 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 390 chr1 188419604 188420433 + 0.75 NA Intergenic Intergenic 976390 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 210.5-51 chr9 35796871 35797266 + 0.75 NA intron (NM_003995, intron 2 of 21) L2c|LINE|L2 4659 NM_003995 4882 Hs.78518 NM_000907 ENSG00000159899 NPR2 AMDM|ANPRB|ANPb|ECDM|GUC2B|GUCY2B|NPRB|NPRBi|SNSK natriuretic peptide receptor 2 protein-coding 203.75-20 chr3 33417390 33417709 + 0.75 NA intron (NM_001128160, intron 2 of 14) L1MB7|LINE|L1 22829 NM_001128160 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 182.25-31 chr20 2387105 2387390 + 0.75 NA intron (NM_198994, intron 1 of 12) intron (NM_198994, intron 1 of 12) 6346 NM_198994 343641 Hs.452039 NM_198994 ENSG00000166948 TGM6 SCA35|TG6|TGM3L|TGY|dJ734P14.3 transglutaminase 6 protein-coding 167.25-52 chr4 35213221 35213658 + 0.75 NA Intergenic Intergenic -943692 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 216.75-4 chr10 110140943 110141484 + 0.75 NA Intergenic Intergenic -66392 NM_130439 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 321-4 chr5 117055280 117055752 + 0.75 NA Intergenic Intergenic -293307 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 259.25-12 chr6 37411394 37411980 + 0.75 NA Intergenic L1ME1|LINE|L1 -21534 NM_015050 23070 Hs.520102 NM_015050 ENSG00000137200 CMTR1 FTSJD2|KIAA0082|MTr1|hMTr1 cap methyltransferase 1 protein-coding 164.25-16 chr10 23572639 23572993 + 0.75 NA Intergenic MIRb|SINE|MIR -121911 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 160-58 chr4 19500857 19501312 + 0.75 NA Intergenic Intergenic -750821 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 157.75-34 chr14 33550849 33551284 + 0.75 NA intron (NM_001165893, intron 3 of 10) intron (NM_001165893, intron 3 of 10) -157871 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 225.25-17 chr2 82167560 82167919 + 0.75 NA Intergenic Intergenic -689064 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 177.5-38 chr4 13309654 13309957 + 0.75 NA Intergenic L2b|LINE|L2 174535 NM_001017979 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 212.5-54 chr8 82971200 82971611 + 0.75 NA Intergenic MER4-int|LTR|ERV1 59301 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 270.75-11 chr17 81616380 81616899 + 0.75 NA intron (NM_001369698, intron 3 of 16) AluY|SINE|Alu 20473 NM_017921 55666 Hs.464333 NM_017921 ENSG00000182446 NPLOC4 NPL4 NPL4 homolog, ubiquitin recognition factor protein-coding 177.25-24 chr15 62169259 62169525 + 0.75 NA Intergenic Intergenic -4107 NM_001007595 388125 Hs.144372 NM_001007595 ENSG00000205502 C2CD4B FAM148B|NLF2 C2 calcium dependent domain containing 4B protein-coding 147-45 chr2 55934191 55934469 + 0.75 NA Intergenic L2c|LINE|L2 -10548 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 180.75-42 chr3 88395747 88396059 + 0.75 NA intron (NM_001368167, intron 2 of 2) L1M4|LINE|L1 57447 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 221.5-41 chr5 15066873 15067277 + 0.75 NA Intergenic THE1C|LTR|ERVL-MaLR -195297 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 249.5-17 chr21 32126169 32126730 + 0.75 NA Intergenic L1MA2|LINE|L1 -40154 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 170.75-41 chr3 20741832 20742172 + 0.75 NA Intergenic Intergenic 399534 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 169-49 chr4 134300611 134300876 + 0.75 NA Intergenic Intergenic -98954 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 189-11 chr11 19897572 19897890 + 0.75 NA intron (NM_182964, intron 6 of 37) intron (NM_182964, intron 6 of 37) -124825 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 316.75-10 chr8 70610840 70611579 + 0.75 NA intron (NR_038881, intron 1 of 3) L1ME1|LINE|L1 2632 NR_038881 286190 Hs.662204 NR_038881 ENSG00000246366 LACTB2-AS1 - LACTB2 antisense RNA 1 ncRNA 147.75-32 chr14 44291127 44291395 + 0.75 NA Intergenic Intergenic 216022 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 154.75-85 chr5 99184536 99184893 + 0.75 NA Intergenic Intergenic -255000 NM_001364113 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 206.75-20 chr18 78169353 78169849 + 0.75 NA Intergenic Intergenic -175874 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 222.25-20 chr2 125751131 125751543 + 0.75 NA Intergenic Intergenic 366648 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 316-7 chr7 15652415 15653235 + 0.75 NA intron (NM_005924, intron 1 of 2) L1MD1|LINE|L1 -15122 NR_134258 105375166 Hs.658822 NR_134258 ENSG00000237070 LOC105375166 - uncharacterized LOC105375166 ncRNA 275-3 chr13 32767505 32768245 + 0.75 NA intron (NM_015032, intron 31 of 34) intron (NM_015032, intron 31 of 34) 143777 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 209.5-27 chr2 44623578 44624086 + 0.75 NA intron (NM_024766, intron 3 of 10) L1ME2|LINE|L1 261885 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 146.25-15 chr10 81732349 81732658 + 0.75 NA Intergenic LTR1A2|LTR|ERV1 -142691 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 272-4 chr11 115832819 115833308 + 0.75 NA Intergenic L1MD2|LINE|L1 -72863 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 185.75-66 chr5 120466718 120467099 + 0.75 NA intron (NM_001308087, intron 1 of 1) intron (NM_001308087, intron 1 of 1) 1277 NM_001308087 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 149-43 chr2 81415634 81415863 + 0.75 NA Intergenic Intergenic 51198 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 180.25-43 chr3 18544643 18544933 + 0.75 NA Intergenic Intergenic -99196 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 233.5-13 chr2 151096941 151097458 + 0.75 NA Intergenic Intergenic 164664 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 224.5-28 chr7 26814964 26815326 + 0.75 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 42578 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 315.25-7 chr8 136755978 136756675 + 0.75 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 225528 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 298.25 chr1 11182332 11182827 + 0.75 NA intron (NM_004958, intron 28 of 57) L1ME3A|LINE|L1 -6776 NM_021146 10218 Hs.146559 NM_021146 ENSG00000171819 ANGPTL7 AngX|CDT6|dJ647M16.1 angiopoietin like 7 protein-coding 166.25-14 chr11 9865897 9866170 + 0.75 NA intron (NM_030962, intron 17 of 39) intron (NM_030962, intron 17 of 39) 26891 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 265.5-19 chr7 4471253 4471672 + 0.75 NA Intergenic Intergenic -210833 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 180.25-44 chr3 95094797 95095101 + 0.75 NA Intergenic L1MEg|LINE|L1 156686 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 228.25-15 chr2 134338865 134339559 + 0.75 NA intron (NM_001371457, intron 7 of 16) intron (NM_001371457, intron 7 of 16) 85140 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 212-6 chr10 24970570 24971031 + 0.75 NA Intergenic AluSx|SINE|Alu -18194 NM_001282786 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 246.5-16 chr22 28344719 28345139 + 0.75 NA intron (NM_001145418, intron 2 of 22) MIRb|SINE|MIR -114940 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 190.75-25 chr14 72111066 72111660 + 0.75 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 177836 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 219.5-5 chr11 129049862 129050294 + 0.75 NA intron (NM_001142685, intron 9 of 21) MER6C|DNA|TcMar-Tigger -25890 NM_014715 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 159.75-83 chr5 117518128 117518518 + 0.75 NA intron (NR_046089, intron 3 of 5) intron (NR_046089, intron 3 of 5) 102811 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 263-3 chr1 244358890 244359378 + 0.75 NA intron (NM_001276349, intron 1 of 3) intron (NM_001276349, intron 1 of 3) 6499 NM_001012970 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 218.75-28 chr9 120957156 120957624 + 0.75 NA intron (NM_001735, intron 38 of 40) intron (NM_001735, intron 38 of 40) -4559 NR_148450 110599590 NR_148450 C5-OT1 C5T1LNCRNA C5 3' UTR overlapping transcript 1 ncRNA 312.5-6 chr7 16989086 16989851 + 0.75 NA Intergenic Intergenic -107485 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 169.5-75 chr5 104328343 104328840 + 0.75 NA Intergenic Intergenic -765802 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 146.25-56 chr3 10067704 10068115 + 0.75 NA intron (NM_001018115, intron 26 of 43) L1MA3|LINE|L1 40346 NM_173472 115795 Hs.190413 NM_173472 ENSG00000163705 FANCD2OS C3orf24 FANCD2 opposite strand protein-coding 190.25-28 chr3 168442292 168442607 + 0.75 NA intron (NR_021485, intron 3 of 15) L3|LINE|CR1 -109405 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 192-56 chr9 75309448 75309999 + 0.75 NA Intergenic L1PA16|LINE|L1 221209 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 174-28 chr2 49730734 49731165 + 0.75 NA Intergenic MIR|SINE|MIR 243254 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 363.75-2 chr13 71246642 71247381 + 0.75 NA Intergenic Intergenic 231870 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 159-15 chr11 109530889 109531191 + 0.75 NA Intergenic L1PA8|LINE|L1 108850 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 274.5-8 chr14 71448682 71449304 + 0.75 NA intron (NM_001284247, intron 1 of 23) intron (NM_001284247, intron 1 of 23) 10054 NM_001284247 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 211.75-6 chr11 74839022 74839352 + 0.75 NA 3' UTR (NM_001098638, exon 6 of 6) 3' UTR (NM_001098638, exon 6 of 6) 90338 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 181-10 chr11 94444280 94444747 + 0.75 NA intron (NM_005590, intron 15 of 18) MER107|DNA|hAT-Charlie 22067 NR_031630 100302275 NR_031630 ENSG00000221230 MIR548L MIRN548L|hsa-mir-548l microRNA 548l ncRNA 181.5-45 chr21 33955240 33955535 + 0.75 NA intron (NR_134558, intron 2 of 2) L1MEd|LINE|L1 -20995 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 329.75-3 chr13 55677200 55677801 + 0.75 NA Intergenic Intergenic 503046 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 163.75-10 chr10 73585557 73585858 + 0.75 NA intron (NM_001350995, intron 1 of 21) Charlie22a|DNA|hAT-Charlie 5635 NM_001320437 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 221.5-21 chr17 29971142 29971643 + 0.75 NA intron (NR_026738, intron 4 of 15) L1M5|LINE|L1 29758 NR_026738 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 223.5-40 chr7 47296106 47296564 + 0.75 NA intron (NM_022748, intron 24 of 30) L1P4|LINE|L1 168468 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 182.5-21 chr15 49716935 49717222 + 0.75 NA Intergenic Intergenic 96030 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 166.5-86 chr7 117470912 117471246 + 0.75 NA Intergenic Intergenic -8884 NM_000492 1080 Hs.489786 NM_000492 ENSG00000001626 CFTR ABC35|ABCC7|CF|CFTR/MRP|MRP7|TNR-CFTR|dJ760C5.1 CF transmembrane conductance regulator protein-coding 281.5-6 chr10 93875996 93876460 + 0.75 NA Intergenic L2c|LINE|L2 -17750 NR_144335 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 236-4 chr10 109122033 109122414 + 0.75 NA Intergenic Intergenic 801023 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 235.5-29 chr6 46317976 46318480 + 0.75 NA intron (NR_125838, intron 2 of 3) intron (NR_125838, intron 2 of 3) 7664 NM_005822 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 338.75-2 chr1 215438813 215439404 + 0.75 NA Intergenic L1MA4A|LINE|L1 -128196 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 285.75-9 chr8 85429764 85430277 + 0.75 NA Intergenic Intergenic -8839 NM_005181 761 Hs.82129 NM_005181 ENSG00000164879 CA3 CAIII|Car3 carbonic anhydrase 3 protein-coding 240.5-12 chr2 36046419 36046769 + 0.75 NA Intergenic MIR3|SINE|MIR 308976 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 226.25-12 chr2 70685428 70685981 + 0.75 NA intron (NM_017482, intron 9 of 12) intron (NM_017482, intron 9 of 12) 82011 NM_001185054 119 Hs.66187 NM_001617 ENSG00000075340 ADD2 ADDB adducin 2 protein-coding 178.75-5 chr1 83718979 83719310 + 0.75 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 141402 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 183.75-95 chr8 121406438 121406825 + 0.75 NA Intergenic Intergenic -232715 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 186.5-48 chr4 45041347 45041746 + 0.75 NA Intergenic L1ME3G|LINE|L1 -314912 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 189-39 chr3 82876693 82877185 + 0.75 NA Intergenic L2|LINE|L2 890797 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 259.5-9 chr3 107205764 107206319 + 0.75 NA intron (NR_028303, intron 1 of 3) (ATTT)n|Simple_repeat|Simple_repeat 34597 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 292-4 chr4 90640401 90641064 + 0.75 NA intron (NM_207491, intron 6 of 7) THE1C|LTR|ERVL-MaLR 405701 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 210.5-9 chr11 101263802 101264202 + 0.75 NA Intergenic MamRTE1|LINE|RTE-BovB -134189 NM_001271162 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 201-25 chr4 91283009 91283466 + 0.75 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 994065 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 237.25-7 chr2 26910064 26910504 + 0.75 NA intron (NM_020134, intron 2 of 12) L1ME2|LINE|L1 -60353 NM_012326 22924 Hs.515860 NM_012326 ENSG00000084764 MAPRE3 EB3|EBF3|EBF3-S|RP3 microtubule associated protein RP/EB family member 3 protein-coding 152.5-62 chr20 13451901 13452282 + 0.75 NA intron (NM_017714, intron 11 of 13) Tigger1|DNA|TcMar-Tigger 186841 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 186.25-30 chr21 29821194 29821512 + 0.75 NA intron (NM_000830, intron 1 of 16) Tigger2b_Pri|DNA|TcMar-Tigger 73178 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 302.75-5 chr5 44134657 44135292 + 0.75 NA Intergenic L1MA3|LINE|L1 -253758 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 200.5-10 chr10 93056557 93057025 + 0.75 NA intron (NM_001319195, intron 20 of 21) intron (NM_001319195, intron 20 of 21) -4007 NM_183374 340665 Hs.369993 NM_183374 ENSG00000187553 CYP26C1 FFDD4 cytochrome P450 family 26 subfamily C member 1 protein-coding 278.5-15 chr7 53860078 53860529 + 0.75 NA Intergenic L1MD1|LINE|L1 -48372 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 183-10 chr10 105628308 105628606 + 0.75 NA Intergenic Intergenic 191876 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 191-36 chr3 193565809 193566316 + 0.75 NA Intergenic Intergenic -11167 NM_032279 84239 Hs.674423 NM_032279 ENSG00000127249 ATP13A4 - ATPase 13A4 protein-coding 296.75-8 chr8 131534220 131534865 + 0.75 NA Intergenic Intergenic -369551 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 230-10 chr17 58670904 58671327 + 0.75 NA intron (NM_031272, intron 1 of 31) L1MEd|LINE|L1 20940 NM_001201457 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113|SPGF23 testis expressed 14, intercellular bridge forming factor protein-coding 274.25-14 chr7 96566379 96566813 + 0.75 NA intron (NR_163950, intron 3 of 6) L1M4|LINE|L1 -63073 NM_001201451 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 157.75-47 chr18 74143281 74143672 + 0.75 NA intron (NM_001142958, intron 1 of 9) L1M5|LINE|L1 4358 NM_152676 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 215.5-12 chr12 101650858 101651449 + 0.75 NA intron (NM_206821, intron 13 of 28) intron (NM_206821, intron 13 of 28) -46487 NM_020244 56994 Hs.293077 NM_020244 ENSG00000111666 CHPT1 CPT|CPT1 choline phosphotransferase 1 protein-coding 226-33 chrX 42381407 42381800 + 0.75 NA Intergenic Intergenic 396560 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 329-5 chr6 56031673 56032570 + 0.75 NA Intergenic L1MCa|LINE|L1 59541 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 161.5-16 chr10 55280755 55281172 + 0.75 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -318079 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 152.25-55 chr20 13020657 13020917 + 0.75 NA intron (NM_001349945, intron 2 of 12) MIRb|SINE|MIR 11815 NM_018327 55304 Hs.425023 NM_018327 ENSG00000172296 SPTLC3 C20orf38|LCB 3|LCB2B|LCB3|SPT 3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase long chain base subunit 3 protein-coding 189.5-12 chr11 20325526 20325921 + 0.75 NA Intergenic MER65A|LTR|ERV1 -37962 NM_006410 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 157.75-108 chr8 88765197 88765639 + 0.75 NA Intergenic Intergenic -437935 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 164.5-63 chr5 5744314 5744722 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR 321841 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 209.5-38 chr5 37113494 37113992 + 0.75 NA intron (NM_023073, intron 50 of 51) intron (NM_023073, intron 50 of 51) -135303 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 232.5-46 chr7 39352050 39352693 + 0.75 NA intron (NM_001370959, intron 5 of 9) intron (NM_001370959, intron 5 of 9) -23237 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 190.5-21 chr18 2696975 2697293 + 0.75 NA intron (NM_015295, intron 9 of 47) intron (NM_015295, intron 9 of 47) 41247 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 165-39 chr2 19195954 19196227 + 0.75 NA Intergenic MIR3|SINE|MIR -152339 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 210.5-25 chr21 20788945 20789405 + 0.75 NA intron (NR_109787, intron 1 of 6) LTR48|LTR|ERV1 13933 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 289.5-15 chr6 61243766 61244446 + 0.75 NA Intergenic Intergenic -330024 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 353-3 chr2 67078448 67079000 + 0.75 NA Intergenic Intergenic -7722 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 183.75-15 chr11 97408265 97408573 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR 899994 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 221.75-24 chr2 153199218 153199768 + 0.75 NA Intergenic FordPrefect|DNA|hAT-Tip100 279269 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 187.75-35 chr2 8805705 8806251 + 0.75 NA intron (NM_001348732, intron 7 of 28) Tigger3a|DNA|TcMar-Tigger 31635 NM_001348743 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS|SINO kinase D interacting substrate 220 protein-coding 289.25 chr1 246383568 246384266 + 0.75 NA intron (NM_001167740, intron 1 of 11) intron (NM_001167740, intron 1 of 11) 33495 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 232.25-23 chr3 48051964 48052636 + 0.75 NA intron (NM_002375, intron 1 of 18) AluSz6|SINE|Alu 36548 NM_002375 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 208.25-5 chr1 115110435 115111071 + 0.75 NA Intergenic Intergenic -21250 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 183.25-68 chr7 23702614 23702902 + 0.75 NA TTS (NM_001127364) TTS (NM_001127364) -7461 NM_031414 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 151.25-21 chr12 122579841 122580206 + 0.75 NA intron (NM_014708, intron 32 of 63) intron (NM_014708, intron 32 of 63) 52774 NM_014708 9735 Hs.300559 NM_014708 ENSG00000184445 KNTC1 ROD kinetochore associated 1 protein-coding 277.25-9 chr5 58198984 58199738 + 0.75 NA Intergenic Intergenic -77020 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 246.25-19 chr18 57218192 57218824 + 0.75 NA Intergenic Intergenic -47314 NR_149129 105372138 Hs.574448 NR_149129 ENSG00000267726 LINC02565 - long intergenic non-protein coding RNA 2565 ncRNA 146.5-67 chr22 43230557 43230849 + 0.75 NA intron (NM_173050, intron 8 of 21) intron (NM_173050, intron 8 of 21) 18029 NR_134632 105373051 Hs.629290 NR_134632 ENSG00000236272 LOC105373051 - uncharacterized LOC105373051 ncRNA 210-53 chr7 66892042 66892484 + 0.75 NA Intergenic AluJr|SINE|Alu -11857 NR_136637 644794 Hs.552124 NR_136637 LINC02604 lncHERG long intergenic non-protein coding RNA 2604 ncRNA 282.25-8 chr5 76593291 76594151 + 0.75 NA intron (NM_006633, intron 9 of 35) intron (NM_006633, intron 9 of 35) 15248 NR_134278 101929109 Hs.665172 NR_134278 ENSG00000249713 LOC101929109 - uncharacterized LOC101929109 ncRNA 163.25-85 chr8 123321646 123321928 + 0.75 NA intron (NM_014109, intron 27 of 27) AluJr4|SINE|Alu -26247 NR_037516 100500863 NR_037516 ENSG00000207704 MIR548AA1 - microRNA 548aa-1 ncRNA 268-21 chrX 152167088 152167634 + 0.75 NA 3' UTR (NM_000808, exon 10 of 10) 3' UTR (NM_000808, exon 10 of 10) -28783 NM_001011543 4109 Hs.18048 NM_021048 ENSG00000124260 MAGEA10 CT1.10|MAGE10 MAGE family member A10 protein-coding 221-31 chr7 3866860 3867473 + 0.75 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -262519 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 182.5-78 chr8 77737009 77737307 + 0.75 NA Intergenic Intergenic 286461 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 176.75-43 chr20 55322880 55323154 + 0.75 NA Intergenic Intergenic -100026 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 237.75-18 chr4 111854769 111855329 + 0.75 NA Intergenic Intergenic -290405 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 152.25-44 chr2 41259070 41259487 + 0.75 NA Intergenic Intergenic -618277 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 178.25-43 chr4 33162195 33162432 + 0.75 NA Intergenic Intergenic 811275 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 199.5-9 chr13 29114382 29114881 + 0.75 NA intron (NM_001033602, intron 3 of 13) intron (NM_001033602, intron 3 of 13) 90174 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 165.25-46 chr4 74454373 74454630 + 0.75 NA intron (NM_001657, intron 5 of 5) intron (NM_001657, intron 5 of 5) 9365 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 156.25-98 chr8 121156233 121156560 + 0.75 NA Intergenic L1ME2|LINE|L1 -344350 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 155.75-99 chr8 32997311 32997699 + 0.75 NA Intergenic Intergenic 275670 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 215.75-6 chr11 82919393 82919867 + 0.75 NA intron (NM_001363481, intron 2 of 4) L1PB1|LINE|L1 -17890 NM_001319214 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 159.75-7 chr1 182949926 182950397 + 0.75 NA intron (NM_030933, intron 2 of 9) intron (NM_030933, intron 2 of 9) 3005 NM_030933 81626 Hs.497034 NM_030933 ENSG00000157060 SHCBP1L C1orf14|GE36 SHC binding and spindle associated 1 like protein-coding 167.5-3 chr1 51431875 51432295 + 0.75 NA intron (NM_001981, intron 12 of 24) intron (NM_001981, intron 12 of 24) -9990 NM_001159969 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 220.25-20 chr2 62857657 62858038 + 0.75 NA intron (NM_001142615, intron 7 of 22) intron (NM_001142615, intron 7 of 22) 150950 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 267.75-18 chr8 124684401 124684837 + 0.75 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 43854 NM_001363294 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 149-58 chr22 39344582 39344920 + 0.75 NA Intergenic MIR|SINE|MIR -5198 NM_145731 9145 Hs.216226 NM_004711 ENSG00000100321 SYNGR1 - synaptogyrin 1 protein-coding 148.75-95 chr7 43720664 43721120 + 0.75 NA intron (NM_001371314, intron 1 of 7) intron (NM_001371314, intron 1 of 7) 8631 NM_001371317 216.75-3 chr1 227607836 227608293 + 0.75 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 44508 NR_102302 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 165.5-17 chr11 9398113 9398394 + 0.75 NA intron (NM_006391, intron 1 of 24) L2c|LINE|L2 13601 NM_006391 10527 Hs.744911 NM_006391 ENSG00000205339 IPO7 Imp7|RANBP7 importin 7 protein-coding 324 chr1 66878953 66879744 + 0.75 NA intron (NM_024763, intron 4 of 16) L1MC3|LINE|L1 45508 NM_207014 79819 Hs.49421 NM_024763 ENSG00000152763 WDR78 DIC4 WD repeat domain 78 protein-coding 195.25-4 chr12 15149311 15149782 + 0.75 NA intron (NM_032918, intron 2 of 4) intron (NM_032918, intron 2 of 4) -2377 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 245.5-25 chr4 72122688 72123241 + 0.75 NA intron (NM_001144756, intron 2 of 4) L1P3|LINE|L1 83832 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 206.75-49 chr6 157437256 157437901 + 0.75 NA intron (NM_024630, intron 1 of 8) intron (NM_024630, intron 1 of 8) 56388 NM_024630 79683 Hs.596214 NM_024630 ENSG00000175048 ZDHHC14 NEW1CP zinc finger DHHC-type containing 14 protein-coding 230.75-45 chr8 117482754 117483125 + 0.75 NA Intergenic L1PA16|LINE|L1 -37774 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 160.25-76 chr8 118872845 118873166 + 0.75 NA Intergenic Intergenic 78880 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 175.5-72 chr4 30074057 30074445 + 0.75 NA Intergenic L1PA13|LINE|L1 -646118 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 250.25-21 chr7 24212384 24212944 + 0.75 NA Intergenic Intergenic -71526 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 272.25-12 chr4 87932887 87933556 + 0.75 NA Intergenic MER41B|LTR|ERV1 -42429 NM_001251829 6696 Hs.313 NM_000582 ENSG00000118785 SPP1 BNSP|BSPI|ETA-1|OPN secreted phosphoprotein 1 protein-coding 196.25-17 chr14 79060817 79061375 + 0.75 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -138886 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 169.25-41 chr4 66068911 66069289 + 0.75 NA Intergenic L1MA9|LINE|L1 -207724 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 176.5-78 chr7 18302432 18302829 + 0.75 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) 12538 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 169-3 chr1 181942154 181942563 + 0.75 NA Intergenic Kanga11a|DNA|TcMar-Tc2 119354 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 160.5-109 chr8 6490828 6491206 + 0.75 NA intron (NM_024596, intron 11 of 13) (ATATTA)n|Simple_repeat|Simple_repeat 72228 NM_001147 285 Hs.583870 NM_001147 ENSG00000091879 ANGPT2 AGPT2|ANG2 angiopoietin 2 protein-coding 153.25-98 chr5 157476781 157477075 + 0.75 NA TTS (NM_033274) TTS (NM_033274) -16828 NR_136205 102724404 Hs.570889 NR_136204 LOC102724404 - uncharacterized LOC102724404 ncRNA 208.25-37 chr8 138619778 138620249 + 0.75 NA intron (NM_152888, intron 52 of 64) intron (NM_152888, intron 52 of 64) -122283 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 239.5-28 chr5 8207138 8207491 + 0.75 NA Intergenic L1MB1|LINE|L1 250250 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 273.75-9 chr4 40949695 40950312 + 0.75 NA intron (NM_004307, intron 6 of 17) intron (NM_004307, intron 6 of 17) -92811 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 265.5-7 chr16 57531369 57531981 + 0.75 NA intron (NM_033212, intron 1 of 8) L2|LINE|L2 4896 NM_033212 92922 Hs.644611 NM_033212 ENSG00000135736 CCDC102A - coiled-coil domain containing 102A protein-coding 233-9 chr12 62358712 62359119 + 0.75 NA intron (NR_147080, intron 6 of 19) MER2|DNA|TcMar-Tigger 98511 NM_001351165 9958 Hs.434951 NM_006313 ENSG00000135655 USP15 UNPH-2|UNPH4 ubiquitin specific peptidase 15 protein-coding 176-71 chr9 134548767 134549208 + 0.75 NA Intergenic MER63B|DNA|hAT-Blackjack -92818 NM_001278074 1289 Hs.210283 NM_000093 ENSG00000130635 COL5A1 EDSC|EDSCL1 collagen type V alpha 1 chain protein-coding 185.5-15 chr10 111730158 111730473 + 0.75 NA Intergenic Intergenic 453450 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 346 chr11 113095973 113096644 + 0.75 NA intron (NM_181351, intron 1 of 18) L2|LINE|L2 -132848 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 378.75-2 chr5 109698596 109699349 + 0.75 NA intron (NM_002372, intron 1 of 21) HAL1ME|LINE|L1 9606 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 226.5-3 chr1 102363793 102364210 + 0.75 NA Intergenic Intergenic -366767 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 154.75-89 chr6 13096759 13096979 + 0.75 NA intron (NM_001322308, intron 4 of 13) intron (NM_001322308, intron 4 of 13) 83315 NM_001322314 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 207.75-8 chr12 2469651 2470011 + 0.75 NA intron (NM_199460, intron 5 of 49).2 intron (NM_199460, intron 5 of 49).2 200055 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 220-18 chr3 165889111 165889561 + 0.75 NA Intergenic Intergenic -51913 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 222.25-30 chr4 97629731 97630058 + 0.75 NA intron (NM_174952, intron 10 of 10) intron (NM_174952, intron 10 of 10) 262968 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 218.5-9 chr14 44575820 44576275 + 0.75 NA Intergenic L2c|LINE|L2 68638 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 214-15 chr17 83110415 83110856 + 0.75 NA Intergenic Intergenic 29489 NM_001363853 284207 Hs.378821 NM_001004431 ENSG00000176845 METRNL - meteorin like, glial cell differentiation regulator protein-coding 153.25-65 chr2 117443279 117443512 + 0.75 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -371296 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 158.5-40 chr2 18233844 18234074 + 0.75 NA Intergenic Intergenic 326694 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 219.25-2 chr1 197439129 197439550 + 0.75 NA intron (NM_001193640, intron 8 of 9) intron (NM_001193640, intron 8 of 9) 171087 NR_047564 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 164.25-65 chr4 31344955 31345195 + 0.75 NA Intergenic L1MB7|LINE|L1 -161469 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 211.5-41 chr5 85127157 85127616 + 0.75 NA Intergenic (ATGT)n|Simple_repeat|Simple_repeat -742506 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 181.25-13 chr12 63148411 63148799 + 0.75 NA intron (NM_000706, intron 1 of 1) intron (NM_000706, intron 1 of 1) 4205 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 185.75-74 chr7 6695328 6695879 + 0.75 NA intron (NM_006956, intron 4 of 5) intron (NM_006956, intron 4 of 5) 11344 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 160.75-107 chr8 139194060 139194404 + 0.75 NA Intergenic MIR3|SINE|MIR -280191 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 180.25-12 chr11 88199713 88199999 + 0.75 NA Intergenic Intergenic 23354 NR_036124 100423040 NR_036124 ENSG00000266581 MIR3166 - microRNA 3166 ncRNA 197.75-15 chr13 76226837 76227268 + 0.75 NA Intergenic Intergenic -291920 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 208-3 chr1 197360425 197361045 + 0.75 NA intron (NM_001193640, intron 3 of 9) L1MD1|LINE|L1 92483 NR_047564 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 153.25-57 chr2 46167194 46167532 + 0.75 NA intron (NM_005400, intron 14 of 14) MIRb|SINE|MIR -130044 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 220.5-27 chr4 165140607 165140959 + 0.75 NA Intergenic L2-1_AMi|LINE|L2 -27923 NM_001100389 201931 Hs.704511 NM_152681 ENSG00000170088 TMEM192 - transmembrane protein 192 protein-coding 250.25-4 chr11 30537645 30538221 + 0.75 NA intron (NM_001584, intron 1 of 5) intron (NM_001584, intron 1 of 5) 42560 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 207.5-39 chr6 126574775 126575187 + 0.75 NA Intergenic L1MEd|LINE|L1 90350 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 195.5-45 chr3 173469519 173469953 + 0.75 NA intron (NM_014932, intron 2 of 6) L1MB5|LINE|L1 71992 NM_001365932 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 195.75-54 chr4 107949259 107949626 + 0.75 NA exon (NM_183075, exon 4 of 5) exon (NM_183075, exon 4 of 5) -17323 NR_125929 101929595 Hs.678014 NR_125929 ENSG00000245293 LOC101929595 - uncharacterized LOC101929595 ncRNA 179.25-50 chr4 36048843 36049118 + 0.75 NA intron (NR_146893, intron 33 of 36) L1M3|LINE|L1 194959 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 145.75-65 chr20 45391237 45391662 + 0.75 NA intron (NR_003189, intron 3 of 5) L1MD1|LINE|L1 -13124 NM_014477 27296 Hs.710271 NM_014477 ENSG00000124251 TP53TG5 C20orf10|CLG01 TP53 target 5 protein-coding 220.5-11 chr14 56109178 56109689 + 0.75 NA Intergenic L1ME4b|LINE|L1 -8978 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 246-5 chr2 35300903 35301587 + 0.75 NA Intergenic Intergenic -170160 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 184-20 chr17 51046814 51047119 + 0.75 NA promoter-TSS (NM_001251971) promoter-TSS (NM_001251971) -88 NM_001251971 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 211.25-11 chr13 87575837 87576164 + 0.75 NA intron (NR_033829, intron 1 of 5) intron (NR_033829, intron 1 of 5) 42740 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 187-22 chr2 129690361 129690773 + 0.75 NA Intergenic THE1C|LTR|ERVL-MaLR 186924 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 287.25-12 chr5 45505718 45506266 + 0.75 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 190388 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 204.75-56 chr8 92956495 92957036 + 0.75 NA intron (NM_001171797, intron 1 of 4) intron (NM_001171797, intron 1 of 4) 8824 NM_001191036 286144 Hs.440643 NM_001171795 ENSG00000205133 TRIQK C8orf83|PRO0845|UPF0599 triple QxxK/R motif containing protein-coding 169.5-83 chr7 6011654 6012018 + 0.75 NA intron (NM_001362785, intron 2 of 4) intron (NM_001362785, intron 2 of 4) 2269 NM_001362787 7965 Hs.301613 NM_006303 ENSG00000106305 AIMP2 HLD17|JTV-1|JTV1|P38 aminoacyl tRNA synthetase complex interacting multifunctional protein 2 protein-coding 157-89 chr7 104017456 104017787 + 0.75 NA Intergenic Intergenic -27963 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 268.75-7 chr18 7623453 7623933 + 0.75 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 56377 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 163.5-79 chr3 161607633 161607903 + 0.75 NA Intergenic L4_A_Mam|LINE|RTE-X 110960 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 171.5-86 chr6 129523093 129523346 + 0.75 NA Intergenic MSTB|LTR|ERVL-MaLR 186958 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 226.75-3 chr1 214063758 214064210 + 0.75 NA Intergenic Intergenic 75451 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 179-22 chr19 28370431 28370736 + 0.75 NA Intergenic Intergenic -236105 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 232.5-41 chr5 62304347 62304701 + 0.75 NA Intergenic Intergenic -1638 NM_004520 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 151.75-58 chr20 25424695 25424965 + 0.75 NA intron (NR_134574, intron 5 of 7) L1MB7|LINE|L1 17147 NR_134574 9837 Hs.658464 NM_021067 ENSG00000101003 GINS1 IMD55|PSF1 GINS complex subunit 1 protein-coding 222-5 chr12 82559937 82560294 + 0.75 NA Intergenic MER47A|DNA|TcMar-Tigger -126791 NM_001320321 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 166.5-75 chr6 65207620 65207943 + 0.75 NA intron (NM_001292009, intron 12 of 43) L1PA15-16|LINE|L1 -93637 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 156-48 chr22 45795285 45795581 + 0.75 NA intron (NM_013236, intron 9 of 11) AluSx1|SINE|Alu 34909 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 150.5-112 chr7 145050822 145051126 + 0.75 NA Intergenic L1M1|LINE|L1 -214921 NM_022445 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 315.25 chr1 172256098 172256686 + 0.75 NA intron (NR_146559, intron 16 of 20) L1M5|LINE|L1 -111557 NR_103486 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 239-9 chr2 123301163 123301605 + 0.75 NA Intergenic L1M4|LINE|L1 -227903 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 180.5-65 chr7 31778224 31778649 + 0.75 NA intron (NM_001191059, intron 17 of 18) MER20|DNA|hAT-Charlie 91221 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 215.25-33 chr4 74784717 74785278 + 0.75 NA intron (NM_001316963, intron 1 of 4) L1PA11|LINE|L1 9526 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 183-26 chr2 72528512 72529019 + 0.75 NA intron (NR_135774, intron 8 of 19) L1MD1|LINE|L1 297268 NM_001321730 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 150.25-37 chr14 69458618 69458936 + 0.75 NA 3' UTR (NM_001252148, exon 6 of 6) 3' UTR (NM_001252148, exon 6 of 6) -25951 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 192.5-10 chr12 103793079 103793426 + 0.75 NA exon (NM_001031701, exon 9 of 14) exon (NM_001031701, exon 9 of 14) 47982 NM_001031701 51559 Hs.48428 NM_016575 ENSG00000111696 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 312.75 chr2 152393345 152394142 + 0.75 NA intron (NM_052905, intron 1 of 25) L1ME4b|LINE|L1 58569 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 181.25-16 chr14 73388250 73388643 + 0.75 NA intron (NM_001005743, intron 2 of 12) intron (NM_001005743, intron 2 of 12) 70134 NM_003744 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 349.75-4 chr14 59060527 59061137 + 0.75 NA Intergenic Intergenic -127835 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 149.25-2 chr1 52538437 52538752 + 0.75 NA intron (NM_001009881, intron 1 of 29) AluJr|SINE|Alu 14496 NM_015269 23318 Hs.655407 NM_015269 ENSG00000134744 TUT4 PAPD3|TENT3A|ZCCHC11 terminal uridylyl transferase 4 protein-coding 194-6 chr1 215510761 215511176 + 0.75 NA Intergenic L1MA4|LINE|L1 -56336 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 158.25-92 chr5 128919225 128919491 + 0.75 NA Intergenic Intergenic -45769 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 182.5-45 chr4 35461898 35462207 + 0.75 NA Intergenic L1M1|LINE|L1 781887 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 148-56 chr2 199574662 199574909 + 0.75 NA Intergenic Intergenic -33283 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 311.25-10 chr5 29679207 29679689 + 0.75 NA Intergenic L1M4|LINE|L1 -201112 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 151.25-12 chr11 10243911 10244302 + 0.75 NA intron (NM_030962, intron 1 of 39) L1MA10|LINE|L1 50101 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 160.75-96 chr6 141792152 141792686 + 0.75 NA Intergenic L1MA3|LINE|L1 296380 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 251.75-5 chr11 108343367 108344127 + 0.75 NA intron (NM_001351834, intron 58 of 63) FLAM_A|SINE|Alu 120218 NM_001351836 472 Hs.367437 NM_000051 ENSG00000149311 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 232.75-38 chrX 79575771 79576197 + 0.75 NA Intergenic Intergenic -208432 NM_001171581 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 195.5-57 chr6 1871562 1871983 + 0.75 NA intron (NM_001253846, intron 7 of 10) intron (NM_001253846, intron 7 of 10) 261857 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 201-21 chr2 79928126 79928647 + 0.75 NA intron (NM_001282598, intron 7 of 17) L2a|LINE|L2 -61803 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 207.5-33 chr4 115275984 115276339 + 0.75 NA Intergenic Intergenic -162541 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 179-66 chr9 98394987 98395331 + 0.75 NA intron (NM_005458, intron 8 of 18) L2b|LINE|L2 -139510 NM_018421 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 178.75-23 chr17 68624428 68624745 + 0.75 NA Intergenic Intergenic -3568 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 222.75-19 chr2 115680308 115680826 + 0.75 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 336752 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 229-22 chr6 126546243 126546692 + 0.75 NA Intergenic Intergenic 61836 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 223-9 chr13 70861970 70862425 + 0.75 NA Intergenic L1M8|LINE|L1 -152944 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 221.5-23 chr2 6711689 6712333 + 0.75 NA Intergenic Intergenic 58300 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 170.25-67 chr7 15697183 15697673 + 0.75 NA TTS (NR_110094) TTS (NR_110094) 9050 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 209.75-42 chr8 118266957 118267423 + 0.75 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -155371 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 244.75-15 chr21 21202735 21203186 + 0.75 NA intron (NM_001352597, intron 1 of 10) intron (NM_001352597, intron 1 of 10) 55798 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 156.5-89 chr5 119207238 119207518 + 0.75 NA intron (NM_001290321, intron 34 of 43) intron (NM_001290321, intron 34 of 43) 52741 NR_049892 100847085 NR_049892 ENSG00000264536 MIR5706 - microRNA 5706 ncRNA 186.75-53 chr3 84526092 84526546 + 0.75 NA Intergenic Intergenic 343256 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 157.75-106 chr8 78591828 78592039 + 0.75 NA intron (NM_006823, intron 2 of 3) intron (NM_006823, intron 2 of 3) -33430 NR_125389 101927003 Hs.614849 NR_125389 ENSG00000254266 PKIA-AS1 - PKIA antisense RNA 1 ncRNA 152.5-92 chr5 148110043 148110343 + 0.75 NA intron (NM_006846, intron 18 of 32) MIR|SINE|MIR 46213 NM_001127699 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 168.5-28 chr14 81023773 81024212 + 0.75 NA intron (NM_001142626, intron 1 of 8) Tigger2|DNA|TcMar-Tigger 68371 NM_001018036 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 222.75-10 chr14 48845405 48845859 + 0.75 NA Intergenic AluJo|SINE|Alu 740748 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 264.75-19 chr7 83041495 83042336 + 0.75 NA intron (NM_033026, intron 3 of 24) intron (NM_033026, intron 3 of 24) 120969 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 150-71 chr4 181157489 181157842 + 0.75 NA intron (NR_033918, intron 1 of 2) intron (NR_033918, intron 1 of 2) 1484 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 248.75-19 chr8 87218247 87218624 + 0.75 NA intron (NM_173538, intron 5 of 10) intron (NM_173538, intron 5 of 10) 352020 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 191.75-32 chr2 121544764 121545118 + 0.75 NA intron (NM_015282, intron 2 of 38) AluSz|SINE|Alu 14061 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 290.5-9 chr18 67649165 67649758 + 0.75 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) -132741 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4|DE-epi2 dermatan sulfate epimerase like protein-coding 156.25-104 chr9 35783477 35783755 + 0.75 NA Intergenic L1MA6|LINE|L1 -8793 NM_003995 4882 Hs.78518 NM_000907 ENSG00000159899 NPR2 AMDM|ANPRB|ANPb|ECDM|GUC2B|GUCY2B|NPRB|NPRBi|SNSK natriuretic peptide receptor 2 protein-coding 268.5-15 chr3 84246890 84247641 + 0.75 NA Intergenic Intergenic 622310 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 196.25-4 chr1 180293625 180294089 + 0.75 NA intron (NM_032360, intron 7 of 7) FAM|SINE|Alu -19176 NR_037642 100527964 Hs.496545 NR_037642 ENSG00000230124 LHX4-AS1 - LHX4 antisense RNA 1 ncRNA 153.5-6 chr1 167380097 167380344 + 0.75 NA intron (NM_001198783, intron 7 of 15) MIR|SINE|MIR 51150 NM_001198783 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 245-3 chr13 59507522 59507944 + 0.75 NA Intergenic Intergenic -504985 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 165.75-25 chr12 21381365 21381634 + 0.75 NA intron (NM_134431, intron 1 of 15) L1PB3|LINE|L1 8597 NM_000415 3375 Hs.46835 NM_000415 ENSG00000121351 IAPP DAP|IAP islet amyloid polypeptide protein-coding 155.75-12 chr10 12508646 12508892 + 0.75 NA intron (NM_001351032, intron 3 of 11) intron (NM_001351032, intron 3 of 11) -69984 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 184.25-57 chr5 111020801 111021125 + 0.75 NA Intergenic tRNA-Ile-ATA|tRNA|tRNA -49117 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 311-3 chr16 3676169 3676812 + 0.75 NA intron (NM_001272049, intron 5 of 16) intron (NM_001272049, intron 5 of 16) 21786 NM_001351825 1773 Hs.629638 NM_005223 ENSG00000213918 DNASE1 DNL1|DRNI deoxyribonuclease 1 protein-coding 254.5-25 chr6 134769772 134770311 + 0.75 NA Intergenic Intergenic 180060 NM_170771 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 146.25-33 chr17 12932636 12932909 + 0.75 NA intron (NM_001321164, intron 7 of 20) L1M5|LINE|L1 -15430 NR_039747 100616494 NR_039747 ENSG00000265503 MIR1269B - microRNA 1269b ncRNA 153.25-118 chrX 138284864 138285179 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR 382772 NR_030229 574507 NR_030229 ENSG00000207800 MIR504 MIRN504|hsa-mir-504|mir-504 microRNA 504 ncRNA 150.5-121 chr8 112830997 112831201 + 0.75 NA intron (NM_001363185, intron 9 of 66) intron (NM_001363185, intron 9 of 66) 187606 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 195.75-33 chr2 27833764 27834082 + 0.75 NA intron (NM_022128, intron 5 of 7) intron (NM_022128, intron 5 of 7) -54786 NM_001329112 9577 Hs.258314 NM_004899 ENSG00000158019 BABAM2 BRCC4|BRCC45|BRE BRISC and BRCA1 A complex member 2 protein-coding 242-8 chr13 78236655 78237109 + 0.75 NA intron (NR_047001, intron 2 of 5) L1MD2|LINE|L1 182027 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 167-24 chr14 62647387 62647912 + 0.75 NA Intergenic Intergenic 397809 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 269-7 chr3 27102696 27103144 + 0.75 NA Intergenic Intergenic 113603 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 203.75-7 chr15 96808826 96809471 + 0.75 NA Intergenic Intergenic 25713 NR_158221 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 165.5-56 chr20 61187918 61188353 + 0.75 NA Intergenic Intergenic -64126 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 218.25-27 chr4 88268961 88269467 + 0.75 NA intron (NM_152542, intron 3 of 6) intron (NM_152542, intron 3 of 6) 15347 NM_152542 152926 Hs.43744 NM_152542 ENSG00000163644 PPM1K BDP|MSUDMV|PP2Ckappa|PP2Cm|PTMP|UG0882E07 protein phosphatase, Mg2+/Mn2+ dependent 1K protein-coding 232.5-19 chr2 114460917 114461367 + 0.75 NA promoter-TSS (NM_001321905) promoter-TSS (NM_001321905) -435 NM_001321911 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 229.75-11 chr17 54504195 54504713 + 0.75 NA Intergenic MER110-int|LTR|ERV1 -396237 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 209.25-3 chr10 49124041 49124499 + 0.75 NA intron (NR_038973, intron 1 of 5) intron (NR_038973, intron 1 of 5) 2431 NR_038973 100506733 Hs.404175 NR_038973 ENSG00000234736 FAM170B-AS1 - FAM170B antisense RNA 1 ncRNA 240-13 chr2 55091956 55092413 + 0.75 NA intron (NM_001321904, intron 1 of 9) AluJr|SINE|Alu -40912 NM_001321859 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 234-9 chr4 107609271 107609654 + 0.75 NA Intergenic Intergenic 110772 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 219.25-15 chr16 25443346 25443887 + 0.75 NA Intergenic L3|LINE|CR1 -185771 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 175.25-3 chr10 6720908 6721299 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR -16279 NR_138480 108570035 Hs.568834 NR_138480 LINP1 - lncRNA in non-homologous end joining pathway 1 ncRNA 175-44 chr5 113696954 113697352 + 0.75 NA Intergenic Intergenic 183459 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 179.75-61 chr7 21981683 21982087 + 0.75 NA Intergenic Intergenic -35986 NM_001127370 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 191-55 chr9 80430086 80430455 + 0.75 NA Intergenic L2a|LINE|L2 455247 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 247-25 chr7 85055691 85056157 + 0.75 NA intron (NM_152754, intron 6 of 16) intron (NM_152754, intron 6 of 16) 66007 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 187-9 chr12 6590001 6590552 + 0.75 NA intron (NM_001273, intron 22 of 39) L1MC4a|LINE|L1 -8667 NR_003012 677780 Hs.689692 NR_003012 ENSG00000251898 SCARNA11 ACA57 small Cajal body-specific RNA 11 ncRNA 316.25-5 chr5 93164298 93164856 + 0.75 NA Intergenic L1ME4a|LINE|L1 406766 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 271-3 chr10 73377027 73377511 + 0.75 NA intron (NM_004034, intron 13 of 13) intron (NM_004034, intron 13 of 13) -18405 NM_001367801 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 151.5-39 chr17 61153483 61153802 + 0.75 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 214062 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 374-3 chr9 102266246 102266978 + 0.75 NA Intergenic L1MA3|LINE|L1 -253025 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 197.75-68 chr8 96171299 96171867 + 0.75 NA Intergenic MIR|SINE|MIR -10777 NM_001001557 392255 Hs.492277 NM_001001557 ENSG00000156466 GDF6 BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4 growth differentiation factor 6 protein-coding 194.25-25 chr3 13560187 13560666 + 0.75 NA intron (NM_001004019, intron 1 of 17) intron (NM_001004019, intron 1 of 17) -8314 NM_001165035 2199 Hs.198862 NM_001998 ENSG00000163520 FBLN2 - fibulin 2 protein-coding 198.25-42 chr5 65355111 65355524 + 0.75 NA intron (NR_135689, intron 7 of 25) intron (NR_135689, intron 7 of 25) 126603 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 254.5-27 chr7 28923914 28924345 + 0.75 NA Intergenic AluJb|SINE|Alu 34201 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 160.5-70 chr4 63770191 63770578 + 0.75 NA Intergenic Intergenic 639066 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 175-20 chr2 124508600 124508918 + 0.75 NA intron (NM_130773, intron 8 of 23) intron (NM_130773, intron 8 of 23) 483472 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 217.5-9 chr11 107522041 107522535 + 0.75 NA intron (NM_138775, intron 10 of 11) intron (NM_138775, intron 10 of 11) 43447 NM_138775 91801 Hs.503763 NM_138775 ENSG00000137760 ALKBH8 ABH8|TRM9|TRMT9|TRMT9A alkB homolog 8, tRNA methyltransferase protein-coding 208.25-16 chr13 21872213 21872620 + 0.75 NA TTS (NR_047040) TTS (NR_047040) 5744 NR_047040 100874182 Hs.148951 NR_047040 ENSG00000226722 LINC00424 - long intergenic non-protein coding RNA 424 ncRNA 249.5-8 chr13 36071670 36072199 + 0.75 NA intron (NM_001330071, intron 3 of 16) intron (NM_001330071, intron 3 of 16) 59448 NM_001330071 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 147-98 chr6 40426205 40426474 + 0.75 NA intron (NM_020737, intron 2 of 2) L3|LINE|CR1 48002 NR_160959 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 157-108 chrX 51530772 51531175 + 0.75 NA Intergenic L1MC2|LINE|L1 -23532 NR_110654 102723426 Hs.584513 NR_110654 LINC01496 - long intergenic non-protein coding RNA 1496 ncRNA 320-5 chr2 185541203 185541846 + 0.75 NA Intergenic Intergenic 197195 NR_110216 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 221.5-39 chr4 109282766 109283259 + 0.75 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 19646 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 202.25-37 chr2 222699734 222700139 + 0.75 NA intron (NM_058165, intron 5 of 5) intron (NM_058165, intron 5 of 5) 28278 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 230.25-22 chr2 228341258 228341777 + 0.75 NA Intergenic L2|LINE|L2 -159830 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 187.75 chr1 8693303 8693813 + 0.75 NA intron (NM_001042681, intron 1 of 22) L1MC2|LINE|L1 124082 NM_001042681 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 185-4 chr1 155151915 155152344 + 0.75 NA Intergenic L1MA2|LINE|L1 -11598 NM_153741 54344 Hs.110477 NM_018973 ENSG00000179085 DPM3 CDG1O dolichyl-phosphate mannosyltransferase subunit 3, regulatory protein-coding 196.25-28 chr2 39358177 39358540 + 0.75 NA intron (NM_003618, intron 2 of 33) L2c|LINE|L2 78927 NM_001270425 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 178.5-25 chr14 73187184 73187569 + 0.75 NA intron (NM_000021, intron 6 of 11) Charlie15a|DNA|hAT-Charlie -50130 NR_158678 89932 Hs.509909 NM_173462 ENSG00000100767 PAPLN PPN papilin, proteoglycan like sulfated glycoprotein protein-coding 185.25-43 chr2 78172752 78173196 + 0.75 NA intron (NR_110288, intron 1 of 3) L1MA4A|LINE|L1 84244 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 174.75-19 chr12 59512460 59512880 + 0.75 NA Intergenic L1MA9|LINE|L1 -83359 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 170.25-29 chr2 78776895 78777239 + 0.75 NA Intergenic Intergenic 231536 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 220.5-6 chr12 10329961 10330357 + 0.75 NA TTS (NR_147040) TTS (NR_147040) 8133 NR_159946 113523642 Hs.539490 NR_159946 LINC02617 - long intergenic non-protein coding RNA 2617 ncRNA 260.25-5 chr12 123667152 123667889 + 0.75 NA Intergenic L1M1|LINE|L1 -3593 NM_001143850 79867 Hs.167165 NM_024809 ENSG00000168778 TCTN2 C12orf38|JBTS24|MKS8|TECT2 tectonic family member 2 protein-coding 200-52 chrX 106747481 106747800 + 0.75 NA intron (NM_194463, intron 1 of 6) intron (NM_194463, intron 1 of 6) 20939 NM_194463 79589 Hs.496542 NM_024539 ENSG00000133135 RNF128 GRAIL ring finger protein 128 protein-coding 185.5-52 chr4 137284895 137285270 + 0.75 NA Intergenic Intergenic -72283 NR_149105 105377441 Hs.668386 NR_149105 LINC02511 - long intergenic non-protein coding RNA 2511 ncRNA 158.75-67 chr6 42084822 42085148 + 0.75 NA Intergenic Intergenic 34461 NM_138572 129685 Hs.520122 NM_138572 ENSG00000137413 TAF8 II|TAF|TAF(II)43|TAFII-43|TAFII43|TBN TATA-box binding protein associated factor 8 protein-coding 166.25-54 chr5 54078117 54078460 + 0.75 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) -126689 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 259.5-6 chr2 22876378 22876771 + 0.75 NA Intergenic L3|LINE|CR1 340095 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 179.75-19 chr16 50896750 50897162 + 0.75 NA intron (NR_039672, intron 2 of 6) L1MEc|LINE|L1 18183 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 171.5-48 chr2 108213166 108213497 + 0.75 NA intron (NR_131251, intron 1 of 4) L1M2|LINE|L1 4510 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 251.5-5 chr10 96351276 96351734 + 0.75 NA intron (NM_001284321, intron 1 of 4) intron (NM_001284321, intron 1 of 4) 5654 NM_001284324 93377 Hs.12449 NM_033207 ENSG00000197430 OPALIN HTMP10|TMEM10|TMP10 oligodendrocytic myelin paranodal and inner loop protein protein-coding 146.75-39 chr17 61598584 61598824 + 0.75 NA Intergenic FLAM_C|SINE|Alu -7485 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 168.5-77 chr4 153138107 153138379 + 0.75 NA Intergenic Intergenic -14091 NM_001351056 23321 Hs.435711 NM_015271 ENSG00000109654 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 184.75-64 chr5 168504666 168505148 + 0.75 NA intron (NM_002887, intron 9 of 14) AluJb|SINE|Alu 18436 NM_002887 5917 Hs.654907 NM_002887 ENSG00000113643 RARS ArgRS|DALRD1|HLD9 arginyl-tRNA synthetase protein-coding 195.5-65 chr7 79705648 79705965 + 0.75 NA Intergenic Intergenic 251846 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 233-36 chr8 74329854 74330451 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -8612 NM_020647 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 153.5-91 chr6 110283374 110283634 + 0.75 NA intron (NM_001123364, intron 4 of 4) intron (NM_001123364, intron 4 of 4) 46554 NM_001354595 728464 Hs.634429 NM_001123364 ENSG00000053328 METTL24 C6orf186 methyltransferase like 24 protein-coding 161.75-52 chr3 132234352 132234598 + 0.75 NA Intergenic Intergenic -82932 NM_001134194 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 202.25-28 chr19 6747254 6747655 + 0.75 NA intron (NR_110231, intron 11 of 14) L1M5|LINE|L1 7774 NM_001288962 9322 Hs.515094 NM_004240 ENSG00000125733 TRIP10 CIP4|HSTP|STOT|STP|TRIP-10 thyroid hormone receptor interactor 10 protein-coding 199-29 chr5 95639797 95640233 + 0.75 NA Intergenic Arthur1B|DNA|hAT-Tip100 -6762 NM_001131066 317671 Hs.399758 NM_173362 ENSG00000175449 RFESD - Rieske Fe-S domain containing protein-coding 156.5-87 chr5 74534112 74534443 + 0.75 NA intron (NR_126354, intron 1 of 2) L1MEi|LINE|L1 2699 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 190.25-54 chr8 20538862 20539244 + 0.75 NA Intergenic L1ME2|LINE|L1 75873 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 256.5-8 chr19 29465261 29465904 + 0.75 NA intron (NR_040029, intron 1 of 9) HAL1b|LINE|L1 60170 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 155.75-61 chr2 236939440 236939742 + 0.75 NA Intergenic L2b|LINE|L2 116576 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 223.25-25 chr5 29983872 29984363 + 0.75 NA Intergenic Intergenic 103557 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 235-21 chr8 132415851 132416377 + 0.75 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 31148 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 150.25-19 chr11 41638928 41639229 + 0.75 NA Intergenic LTR8|LTR|ERV1 -75490 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 192.75-33 chr2 222046100 222046644 + 0.75 NA Intergenic L2a|LINE|L2 -251775 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 198-17 chr20 38455107 38455634 + 0.75 NA Intergenic FLAM_A|SINE|Alu 6001 NR_002986 677837 Hs.16936 NR_002986 ENSG00000199266 SNORA60 ACA60 small nucleolar RNA, H/ACA box 60 snoRNA 195.25-11 chr13 48958730 48959192 + 0.75 NA Intergenic Intergenic -16951 NM_001079673 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 155.25-92 chr8 99932487 99932941 + 0.75 NA Intergenic L1M3|LINE|L1 -39007 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 229-7 chr14 58494719 58495231 + 0.75 NA intron (NM_001329944, intron 26 of 31) L1MEh|LINE|L1 55294 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 147.75-37 chr14 94632439 94632839 + 0.75 NA Intergenic MER52A|LTR|ERV1 -8086 NR_015340 388007 Hs.527795 NR_015340 ENSG00000187483 SERPINA13P SERPINA13|UNQ6121 serpin family A member 13, pseudogene pseudo 147-63 chr3 55311156 55311535 + 0.75 NA Intergenic L1M5|LINE|L1 133173 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 272.75-6 chr14 71830694 71831164 + 0.75 NA Intergenic AluJo|SINE|Alu -101242 NM_001370289 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 146.75-51 chr2 49592125 49592400 + 0.75 NA Intergenic Intergenic 381941 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 155.5-25 chr12 104809452 104809698 + 0.75 NA intron (NM_032148, intron 11 of 11) intron (NM_032148, intron 11 of 11) 148715 NM_001352171 84102 Hs.577463 NM_032148 ENSG00000136052 SLC41A2 SLC41A1-L1 solute carrier family 41 member 2 protein-coding 217.5-25 chr2 197425854 197426223 + 0.75 NA intron (NM_001005526, intron 1 of 4) intron (NM_001005526, intron 1 of 4) 9055 NM_012433 23451 Hs.632554 NM_012433 ENSG00000115524 SF3B1 Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155 splicing factor 3b subunit 1 protein-coding 329-2 chr12 191298 192140 + 0.75 NA intron (NM_001206931, intron 14 of 14) MLT1L|LTR|ERVL-MaLR -11926 NR_120475 101929384 Hs.569138 NR_120475 ENSG00000256577 LOC101929384 - uncharacterized LOC101929384 ncRNA 324.75-9 chr7 62753577 62754205 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 550165 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 238.25-23 chr3 133490326 133490854 + 0.75 NA intron (NR_135276, intron 1 of 4) intron (NR_135276, intron 1 of 4) 556 NR_135277 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 180.5-73 chr8 142903365 142903714 + 0.75 NA Intergenic MLT2D|LTR|ERVL 14304 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 181-2 chr1 216218110 216218524 + 0.75 NA intron (NM_206933, intron 14 of 71) intron (NM_206933, intron 14 of 71) 145852 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 215.25-18 chr19 56877708 56878032 + 0.75 NA Intergenic MLT1B|LTR|ERVL-MaLR 36968 NR_024059 100073347 Hs.467337 NR_024059 ENSG00000268654 MIMT1 LINC00067|MIM1|NCRNA00067 MER1 repeat containing imprinted transcript 1 ncRNA 153.75-88 chr8 109356495 109356796 + 0.75 NA Intergenic Charlie24|DNA|hAT-Charlie -5816 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 149-48 chr2 200817211 200817533 + 0.75 NA intron (NM_001207067, intron 6 of 11) intron (NM_001207067, intron 6 of 11) 4986 NM_001207068 9689 Hs.355983 NM_014670 ENSG00000082153 BZW1 BZAP45|Nbla10236 basic leucine zipper and W2 domains 1 protein-coding 157-36 chr15 86644201 86644627 + 0.75 NA intron (NM_152336, intron 22 of 24) L1ME3A|LINE|L1 -288466 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 298.5-5 chr16 61175887 61176835 + 0.75 NA Intergenic LTR16E1|LTR|ERVL -120595 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 151-43 chr2 117749399 117749726 + 0.75 NA Intergenic MLT1G|LTR|ERVL-MaLR -65129 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 172.25-31 chr2 54449133 54449601 + 0.75 NA Intergenic Charlie5|DNA|hAT-Charlie -6960 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 153.25-36 chr14 59573377 59573662 + 0.75 NA intron (NM_001164399, intron 2 of 19) intron (NM_001164399, intron 2 of 19) 3293 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 212.75 chr1 108838419 108838990 + 0.75 NA intron (NM_152763, intron 6 of 15) intron (NM_152763, intron 6 of 15) 18390 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 224.75-30 chr5 30431182 30431579 + 0.75 NA Intergenic L1MCa|LINE|L1 550820 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 335.75-2 chr14 71561812 71562681 + 0.75 NA intron (NM_001354289, intron 5 of 23) intron (NM_001354289, intron 5 of 23) -24052 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 207-46 chr6 146414195 146414707 + 0.75 NA intron (NM_001278067, intron 7 of 7) AluY|SINE|Alu -129382 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 191-30 chr2 63524216 63524513 + 0.75 NA intron (NR_148705, intron 1 of 16) L1PA13|LINE|L1 64113 NM_015910 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 157.5-107 chr8 112729990 112730409 + 0.75 NA intron (NM_001363185, intron 11 of 66) intron (NM_001363185, intron 11 of 66) 86706 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 153-20 chr14 40903849 40904071 + 0.75 NA Intergenic Intergenic -50751 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 260.75-13 chr15 41430219 41430860 + 0.75 NA intron (NM_015138, intron 1 of 17) AluSx|SINE|Alu 13435 NM_015138 23168 Hs.511096 NM_015138 ENSG00000137815 RTF1 GTL7|KIAA0252 RTF1 homolog, Paf1/RNA polymerase II complex component protein-coding 291.25-6 chr21 23979157 23979811 + 0.75 NA Intergenic MSTD|LTR|ERVL-MaLR 341893 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 157.5-43 chr2 5883072 5883327 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger -49488 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 166-49 chr3 80166479 80166947 + 0.75 NA Intergenic (TTTC)n|Simple_repeat|Simple_repeat -398715 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 254.75-12 chr19 48771987 48772503 + 0.75 NA Intergenic AluSq2|SINE|Alu 16721 NM_019113 26291 Hs.283015 NM_019113 ENSG00000105550 FGF21 - fibroblast growth factor 21 protein-coding 225-31 chr9 103657227 103657830 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR -332495 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 294.25-14 chr7 81646728 81647289 + 0.75 NA intron (NR_126025, intron 1 of 10) MIR|SINE|MIR -20792 NR_126026 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 157.5-108 chr8 114519064 114519423 + 0.75 NA Intergenic L1MC4|LINE|L1 -1082304 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 372.75-3 chr8 83991045 83991701 + 0.75 NA Intergenic L1PA14|LINE|L1 -191414 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 263.25-28 chr8 84879761 84880463 + 0.75 NA intron (NM_001354323, intron 7 of 7) MER67D|LTR|ERV1 174185 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 207.5-16 chr14 62130125 62130596 + 0.75 NA non-coding (NR_015358, exon 4 of 4) non-coding (NR_015358, exon 4 of 4) 9613 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 147.25-54 chr21 20762921 20763258 + 0.75 NA intron (NR_109786, intron 6 of 7) L1MEc|LINE|L1 40019 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 236-27 chr5 35576980 35577452 + 0.75 NA Intergenic L1MC1|LINE|L1 -40647 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 205.75-19 chr11 130531010 130531486 + 0.75 NA Intergenic Intergenic 82274 NM_139055 170689 Hs.534221 NM_139055 ENSG00000166106 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif 15 protein-coding 208-24 chr4 45926274 45926803 + 0.75 NA Intergenic MLT1L|LTR|ERVL-MaLR 197516 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 160-31 chr18 25405320 25405675 + 0.75 NA Intergenic Intergenic -53331 NM_015461 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 222.25-15 chr16 9960171 9960524 + 0.75 NA intron (NM_001134408, intron 2 of 13) L1ME4a|LINE|L1 221720 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 344.25-5 chr4 32148606 32149236 + 0.75 NA intron (NR_125936, intron 2 of 2) intron (NR_125936, intron 2 of 2) -126499 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 149-50 chr20 6188516 6188813 + 0.75 NA Intergenic L2c|LINE|L2 -65120 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 160-9 chr10 59240539 59240941 + 0.75 NA intron (NM_001143774, intron 4 of 4) intron (NM_001143774, intron 4 of 4) 63273 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 259.75-7 chr11 67466800 67467244 + 0.75 NA intron (NR_073412, intron 4 of 6) MIRb|SINE|MIR 2229 NR_073411 80194 Hs.288761 NM_025124 ENSG00000172663 TMEM134 - transmembrane protein 134 protein-coding 165.75-64 chr3 108544066 108544461 + 0.75 NA Intergenic Intergenic -14941 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 269-3 chr11 19019955 19020424 + 0.75 NA Intergenic Intergenic 39828 NM_001303615 117194 Hs.350566 NM_054030 ENSG00000183695 MRGPRX2 MGRG3|MRGX2 MAS related GPR family member X2 protein-coding 241-7 chr11 18379543 18379981 + 0.75 NA Intergenic AluSx|SINE|Alu -8025 NR_036116 100423016 NR_036116 ENSG00000264603 MIR3159 - microRNA 3159 ncRNA 162.5-79 chr6 167889572 167889940 + 0.75 NA intron (NM_001207008, intron 7 of 31) intron (NM_001207008, intron 7 of 31) 62121 NM_001291964 4301 Hs.614974 NM_005936 ENSG00000130396 AFDN AF6|MLL-AF6|MLLT4|l-afadin afadin, adherens junction formation factor protein-coding 205.75-50 chr6 68642282 68642709 + 0.75 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 7213 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 212-10 chr12 132588557 132589009 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR 6786 NR_106821 102465975 NR_106821 ENSG00000277052 MIR6763 hsa-mir-6763 microRNA 6763 ncRNA 163-84 chr8 120475383 120475784 + 0.75 NA intron (NM_022045, intron 11 of 21) MADE2|DNA|TcMar-Mariner 30164 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 201.25-6 chr10 85009529 85010077 + 0.75 NA Intergenic Intergenic 189102 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 169.75-11 chr1 194520047 194520316 + 0.75 NA Intergenic L2b|LINE|L2 1215436 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 189.5-46 chr3 193316939 193317333 + 0.75 NA intron (NM_198505, intron 17 of 29) L2a|LINE|L2 9892 NR_046758 100874218 Hs.407490 NR_046758 ATP13A5-AS1 - ATP13A5 antisense RNA 1 ncRNA 342.25-6 chr3 185288057 185288581 + 0.75 NA intron (NM_001242317, intron 2 of 12) (TA)n|Simple_repeat|Simple_repeat 5358 NM_001242317 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 236-14 chr17 8335148 8335557 + 0.75 NA Intergenic FLAM_C|SINE|Alu -4488 NM_001319953 146852 Hs.186045 NM_153007 ENSG00000184650 ODF4 CT134|CT136|OPPO1 outer dense fiber of sperm tails 4 protein-coding 194.75-27 chr3 95809943 95810457 + 0.75 NA Intergenic Intergenic -127007 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 175.5-16 chr11 86396509 86396890 + 0.75 NA intron (NM_001156474, intron 5 of 14) MIRc|SINE|MIR 21812 NM_001156474 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 220.25-11 chr14 51731590 51732160 + 0.75 NA Intergenic MIRb|SINE|MIR 14592 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 253.5-16 chr3 101459712 101460390 + 0.75 NA intron (NM_020654, intron 3 of 23) L1MB5|LINE|L1 53161 NM_001282803 57337 Hs.529551 NM_020654 ENSG00000138468 SENP7 - SUMO specific peptidase 7 protein-coding 296.5-6 chr13 92811071 92811873 + 0.75 NA intron (NM_004466, intron 7 of 7) L1MB4|LINE|L1 -89858 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 199.75-54 chr7 103606267 103606691 + 0.75 NA intron (NM_005045, intron 22 of 64) MIR3|SINE|MIR -160272 NR_135802 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 260.25-24 chr6 62934689 62935150 + 0.75 NA Intergenic L1MA3|LINE|L1 385058 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 162.75-60 chr5 22847602 22847880 + 0.75 NA intron (NM_001364105, intron 1 of 15) intron (NM_001364105, intron 1 of 15) 5603 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 216-23 chr20 59528557 59529005 + 0.75 NA Intergenic L1MC1|LINE|L1 -48728 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 214.75-9 chr1 203536194 203536671 + 0.75 NA Intergenic AluSz|SINE|Alu 42279 NM_014359 26254 Hs.632468 NM_014359 ENSG00000188770 OPTC OPT opticin protein-coding 276.25-8 chr3 153385445 153386093 + 0.75 NA intron (NR_146713, intron 6 of 6) intron (NR_146713, intron 6 of 6) -98726 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 166.5-36 chr2 5427947 5428337 + 0.75 NA Intergenic Intergenic 262976 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 161.25-22 chr14 42130641 42130903 + 0.75 NA Intergenic Intergenic 523916 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 160-8 chr10 51548145 51548469 + 0.75 NA intron (NM_001098512, intron 3 of 17) CR1_Mam|LINE|CR1 151288 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 231.25-22 chr20 11863628 11864158 + 0.75 NA intron (NR_110635, intron 1 of 1) MER21C|LTR|ERVL 6822 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 327.75-9 chr5 104350861 104351583 + 0.75 NA Intergenic Intergenic -748252 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 191.25-57 chr5 168913276 168913688 + 0.75 NA intron (NM_003062, intron 4 of 35) L1ME4b|LINE|L1 -99745 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 203-7 chr10 63150742 63151042 + 0.75 NA intron (NM_030759, intron 2 of 3) MER1A|DNA|hAT-Charlie 17564 NM_030759 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 232-25 chr7 47338140 47338504 + 0.75 NA intron (NM_022748, intron 20 of 30) L1MD1|LINE|L1 126481 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 172.25-69 chr7 111115547 111116086 + 0.75 NA intron (NM_001099658, intron 2 of 2) AluSz6|SINE|Alu 24689 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 271.25-7 chr17 29822484 29823108 + 0.75 NA intron (NM_033389, intron 1 of 14) intron (NM_033389, intron 1 of 14) -61364 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 216-8 chr10 72764777 72765443 + 0.75 NA intron (NR_073062, intron 3 of 9) intron (NR_073062, intron 3 of 9) 44081 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 155.5-66 chr3 139860166 139860434 + 0.75 NA Intergenic Intergenic -74885 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 213.5-4 chr1 193142838 193143289 + 0.75 NA intron (NM_024529, intron 7 of 16) intron (NM_024529, intron 7 of 16) 6560 NR_031691 100302163 NR_031691 ENSG00000221680 MIR1278 MIRN1278|hsa-mir-1278|mir-1278 microRNA 1278 ncRNA 161.25-51 chr4 33177622 33178047 + 0.75 NA Intergenic Intergenic 826796 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 157.75-113 chr9 30461588 30461966 + 0.75 NA Intergenic L1MC|LINE|L1 -53323 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 179-3 chr10 15579202 15579580 + 0.75 NA intron (NM_001291494, intron 22 of 28) intron (NM_001291494, intron 22 of 28) 140531 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 262.75-17 chr4 102219028 102219570 + 0.75 NA Intergenic MER5A|DNA|hAT-Charlie 105013 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 163-90 chr9 36472654 36472889 + 0.75 NA Intergenic L4_C_Mam|LINE|RTE-X -71573 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 166.25-18 chr12 30389023 30389394 + 0.75 NA Intergenic Intergenic 288036 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 331.75 chr13 80446369 80446890 + 0.75 NA Intergenic Intergenic -105503 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 185-39 chr2 149217274 149217623 + 0.75 NA Intergenic MER5A|DNA|hAT-Charlie 99274 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 297.75-6 chr2 147492633 147493282 + 0.75 NA Intergenic Intergenic -351560 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 220.75-41 chr7 119617908 119618396 + 0.75 NA Intergenic L1PREC2|LINE|L1 289223 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 166.25-19 chr12 32655065 32655433 + 0.75 NA Intergenic L1MC1|LINE|L1 -23951 NM_001330380 10059 Hs.556296 NM_005690 ENSG00000087470 DNM1L DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5 dynamin 1 like protein-coding 147-19 chr11 81305216 81305481 + 0.75 NA Intergenic MIR|SINE|MIR -542545 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 185.25-22 chr14 60345645 60345995 + 0.75 NA Intergenic Intergenic 22624 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 177.25-2 chr1 23479389 23479845 + 0.75 NA intron (NM_001143778, intron 1 of 23).2 L1MC4|LINE|L1 4562 NM_017707 55616 Hs.437379 NM_017707 ENSG00000088280 ASAP3 ACAP4|CENTB6|DDEFL1|UPLC1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 protein-coding 185.5-20 chr11 109473547 109473882 + 0.75 NA Intergenic L1MCa|LINE|L1 51524 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 187-51 chr6 12263659 12264054 + 0.75 NA Intergenic Intergenic -26505 NM_001955 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 256.75-6 chr12 42872712 42873307 + 0.75 NA Intergenic L1MC3|LINE|L1 180793 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 181.75-45 chr3 102185806 102186084 + 0.75 NA Intergenic Charlie2b|DNA|hAT-Charlie 22240 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 254.75-9 chr16 47850282 47850648 + 0.75 NA intron (NR_110649, intron 1 of 1) intron (NR_110649, intron 1 of 1) -8116 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 191.5-22 chr15 36704087 36704506 + 0.75 NA intron (NM_032499, intron 9 of 11) intron (NM_032499, intron 9 of 11) 109419 NM_001290232 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 146.25-75 chr4 184722913 184723247 + 0.75 NA intron (NR_104593, intron 4 of 11) L1ME4b|LINE|L1 11016 NM_024629 79682 Hs.575032 NM_024629 ENSG00000151725 CENPU CENP50|CENPU50|KLIP1|MLF1IP|PBIP1 centromere protein U protein-coding 224.75-40 chr7 52651066 52651793 + 0.75 NA Intergenic (CAT)n|Simple_repeat|Simple_repeat -384204 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 175.5-55 chr22 25762443 25762883 + 0.75 NA intron (NM_001318245, intron 2 of 43) intron (NM_001318245, intron 2 of 43) 20475 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 232-23 chr6 140491132 140491613 + 0.75 NA Intergenic MER57B1|LTR|ERV1 -192442 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 159.25-83 chr9 27111379 27111613 + 0.75 NA intron (NM_001290078, intron 1 of 20) intron (NM_001290078, intron 1 of 20) 2355 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 182.5 chr1 174279050 174279436 + 0.75 NA intron (NM_001366445, intron 10 of 13) intron (NM_001366445, intron 10 of 13) 4143 NM_001366449 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 237-14 chr6 117564071 117564552 + 0.75 NA intron (NM_001017408, intron 7 of 7) intron (NM_001017408, intron 7 of 7) 38200 NM_020399 57120 Hs.191539 NM_020399 ENSG00000047932 GOPC CAL|FIG|GOPC1|PIST|dJ94G16.2 golgi associated PDZ and coiled-coil motif containing protein-coding 187.25-49 chr5 39089205 39089620 + 0.75 NA Intergenic L1MA4A|LINE|L1 -15013 NM_001285440 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 164.25-15 chr10 21341548 21341824 + 0.75 NA intron (NR_155751, intron 4 of 4) AluSq2|SINE|Alu 31264 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 217.25-19 chr18 5949407 5949960 + 0.75 NA Intergenic AluY|SINE|Alu -53729 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 234.5-23 chr7 29254005 29254522 + 0.75 NA intron (NM_001293072, intron 1 of 12) L2c|LINE|L2 -45293 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 192.5-3 chr10 20189871 20190422 + 0.75 NA intron (NM_032812, intron 9 of 13) intron (NM_032812, intron 9 of 13) -361824 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 185.5-56 chr5 15720223 15720690 + 0.75 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -105454 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 164.25-25 chr13 44410421 44410855 + 0.75 NA Intergenic Intergenic -4654 NR_104174 400128 Hs.438480 NR_104174 ENSG00000237361 TUSC8 LINC01071|XLOC_010588 tumor suppressor candidate 8 ncRNA 150-20 chr12 5052076 5052465 + 0.75 NA Intergenic Intergenic 8391 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 201.25-18 chr18 614164 614631 + 0.75 NA intron (NM_001289036, intron 3 of 10) intron (NM_001289036, intron 3 of 10) -2275 NM_001318522 27098 Hs.732341 NM_014410 ENSG00000079101 CLUL1 RA337M clusterin like 1 protein-coding 292-3 chr3 57088744 57089158 + 0.75 NA Intergenic Intergenic -9683 NM_001128615 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 257.25-5 chr10 63343088 63343643 + 0.75 NA intron (NM_001322258, intron 2 of 24) AluSq2|SINE|Alu 29683 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 181.5-44 chr20 48601738 48602170 + 0.75 NA Intergenic Intergenic 226045 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 181.25-17 chr14 76414724 76414980 + 0.75 NA intron (NM_004452, intron 3 of 10) MIR3|SINE|MIR 43505 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 174.5-73 chr7 33226650 33226999 + 0.75 NA intron (NM_198428, intron 5 of 22) L1MB3|LINE|L1 97260 NM_001348040 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 202.75-6 chr10 62942170 62942610 + 0.75 NA Intergenic L1M5|LINE|L1 -123223 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 162.5-25 chr14 35628577 35628929 + 0.75 NA intron (NM_014990, intron 32 of 40) intron (NM_014990, intron 32 of 40) 94589 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 146-7 chr1 206851085 206851361 + 0.75 NA Intergenic L1MA2|LINE|L1 -14586 NM_018724 50604 Hs.272373 NM_018724 ENSG00000162891 IL20 IL-20|IL10D|ZCYTO10 interleukin 20 protein-coding 326.25 chr10 115606005 115606711 + 0.75 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 512993 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 233.5-33 chr9 213070 213694 + 0.75 NA TTS (NR_160804) TTS (NR_160804) -1483 NM_203447 81704 Hs.132599 NM_203447 ENSG00000107099 DOCK8 HEL-205|MRD2|ZIR8 dedicator of cytokinesis 8 protein-coding 154.25-93 chr9 114684369 114684763 + 0.75 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 -2477 NM_001199233 100505478 Hs.200101 NM_001199233 ENSG00000230601 TEX48 - testis expressed 48 protein-coding 310.75-5 chr3 76427403 76428100 + 0.75 NA Intergenic Intergenic -612348 NM_002942 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 161.75-11 chr12 10516188 10516453 + 0.75 NA intron (NM_001357731, intron 1 of 1) intron (NM_001357731, intron 1 of 1) 10427 NM_001357731 255308 Hs.547382 NM_001357731 ENSG00000180574 EIF2S3B EIF2S3L|eIF-2gA|eIF2gA eukaryotic translation initiation factor 2 subunit gamma B protein-coding 212.75-19 chr22 25509821 25510442 + 0.75 NA Intergenic Intergenic 54485 NR_106875 102466198 NR_106875 ENSG00000277872 MIR6817 hsa-mir-6817 microRNA 6817 ncRNA 162.25-61 chr4 94897143 94897522 + 0.75 NA intron (NM_001203, intron 2 of 12) intron (NM_001203, intron 2 of 12) -98900 NM_001256792 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 208.75-20 chr21 31511784 31512158 + 0.75 NA intron (NM_003253, intron 1 of 28) intron (NM_003253, intron 1 of 28) 47116 NM_001353690 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 147.5-17 chr12 41593050 41593344 + 0.75 NA Intergenic L1M5|LINE|L1 155458 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 159.75-77 chr4 179743803 179744256 + 0.75 NA Intergenic Intergenic 1415120 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 164.25-48 chr2 172935716 172936061 + 0.75 NA intron (NM_001282901, intron 1 of 24) intron (NM_001282901, intron 1 of 24) 7683 NM_001282901 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 221-3 chr1 166061015 166061570 + 0.75 NA intron (NM_001320302, intron 1 of 1) intron (NM_001320302, intron 1 of 1) 93506 NR_030626 100126349 NR_030626 ENSG00000215952 MIR921 MIRN921|hsa-mir-921 microRNA 921 ncRNA 198-50 chr9 30510732 30511053 + 0.75 NA Intergenic Intergenic -102438 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 225.5-21 chr2 77896524 77896924 + 0.75 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -19210 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 190.5-13 chr12 104646575 104646919 + 0.75 NA intron (NM_018413, intron 2 of 2) L2b|LINE|L2 55114 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 184.5-14 chr10 85643822 85644113 + 0.75 NA intron (NM_017551, intron 13 of 15) intron (NM_017551, intron 13 of 15) 66236 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 169.5-32 chr15 49294611 49294888 + 0.75 NA intron (NM_001289030, intron 9 of 10) L2c|LINE|L2 124502 NM_002044 2585 Hs.122006 NM_002044 ENSG00000156958 GALK2 GK2 galactokinase 2 protein-coding 188.75-11 chr11 84393329 84393923 + 0.75 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -76287 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 211.75-37 chr7 5094654 5095219 + 0.75 NA Intergenic L1M4|LINE|L1 22876 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 251.5-18 chr21 30156476 30157103 + 0.75 NA Intergenic MLT1H|LTR|ERVL-MaLR 10016 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 300.25-12 chr5 19370902 19371561 + 0.75 NA Intergenic MLT1F2|LTR|ERVL-MaLR 515041 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 178-29 chr17 58436225 58436596 + 0.75 NA intron (NM_001080439, intron 5 of 5) intron (NM_001080439, intron 5 of 5) -18828 NM_017763 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 233.5-2 chr12 53612707 53613161 + 0.75 NA intron (NR_073163, intron 1 of 12) AluSz6|SINE|Alu 13056 NM_001366563 11016 Hs.12286 NM_006856 ENSG00000170653 ATF7 ATFA activating transcription factor 7 protein-coding 159-25 chr16 76573320 76573625 + 0.75 NA Intergenic Intergenic -61526 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 192.25-59 chr8 61594770 61595034 + 0.75 NA intron (NM_004318, intron 14 of 24) intron (NM_004318, intron 14 of 24) 94909 NM_001164751 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 240.75-7 chr14 76905152 76905846 + 0.75 NA Intergenic AluSx|SINE|Alu -54139 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 188.25-33 chr3 112492760 112493283 + 0.75 NA intron (NM_001085357, intron 1 of 3) intron (NM_001085357, intron 1 of 3) 6451 NM_001085357 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 196 chr1 47210948 47211400 + 0.75 NA Intergenic AluSq4|SINE|Alu 20541 NM_001287347 6886 Hs.705618 NM_003189 ENSG00000162367 TAL1 SCL|TCL5|bHLHa17|tal-1 TAL bHLH transcription factor 1, erythroid differentiation factor protein-coding 175.75-28 chr18 2023640 2023984 + 0.75 NA Intergenic Intergenic 547693 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 170.75-48 chr4 84143072 84143526 + 0.75 NA intron (NR_125909, intron 7 of 8) L1MD3|LINE|L1 155870 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 218.75-2 chr1 177558441 177558941 + 0.75 NA Intergenic Intergenic -141833 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 217.5-20 chr16 7607604 7608054 + 0.75 NA intron (NM_001142333, intron 10 of 14) intron (NM_001142333, intron 10 of 14) 274984 NM_145892 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 168-5 chr1 98037407 98037835 + 0.75 NA intron (NR_046105, intron 3 of 4) intron (NR_046105, intron 3 of 4) 7730 NR_039604 100616452 NR_039604 ENSG00000284247 MIR2682 mir-2682 microRNA 2682 ncRNA 179-45 chr4 60321665 60322156 + 0.75 NA Intergenic THE1D|LTR|ERVL-MaLR -600709 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 170.5-8 chr11 35018725 35019172 + 0.75 NA Intergenic Intergenic 77111 NR_039836 100616437 NR_039836 ENSG00000251862 MIR1343 - microRNA 1343 ncRNA 164-51 chr3 160472211 160472506 + 0.75 NA intron (NR_148403, intron 1 of 20) intron (NR_148403, intron 1 of 20) 13389 NR_148403 100174949 NR_148401 ENSG00000248710 TRIM59-IFT80 IFT80-L TRIM59-IFT80 protein ncRNA 269.25-5 chr10 88788579 88789163 + 0.75 NA Intergenic MER113|DNA|hAT-Charlie -13859 NM_001128215 340654 Hs.55118 NM_001128215 ENSG00000173239 LIPM LIPL3|bA304I5.1 lipase family member M protein-coding 254.5-5 chr14 36366759 36367302 + 0.75 NA Intergenic Intergenic -46354 NM_001144891 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 277.75 chr1 50547823 50548282 + 0.75 NA intron (NM_007051, intron 13 of 18) intron (NM_007051, intron 13 of 18) -124609 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 200-2 chr1 176478963 176479406 + 0.75 NA intron (NM_021936, intron 1 of 4) MIR|SINE|MIR 16009 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 219.25-11 chr13 90250763 90251257 + 0.75 NA Intergenic L1MA4|LINE|L1 19828 NR_030754 693207 NR_030754 ENSG00000283783 MIR622 MIRN622|hsa-mir-622 microRNA 622 ncRNA 200.5-58 chr8 39023037 39023478 + 0.75 NA non-coding (NR_027639, exon 9 of 20) non-coding (NR_027639, exon 9 of 20) -4572 NR_145988 109616979 NR_145736 ENSG00000207199 SNORD38D - small nucleolar RNA, C/D box 38D snoRNA 163.25-12 chr10 36776075 36776417 + 0.75 NA Intergenic L1MEg|LINE|L1 -349611 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 149-9 chr11 15450313 15450566 + 0.75 NA Intergenic MIR|SINE|MIR -193446 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 146.75-88 chr5 77845991 77846353 + 0.75 NA Intergenic Intergenic -38484 NR_105012 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 148.25-98 chr9 27196034 27196259 + 0.75 NA intron (NM_001290077, intron 10 of 21) L1ME4c|LINE|L1 86647 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 212.25-10 chr11 28066179 28066631 + 0.75 NA intron (NM_031217, intron 11 of 16) intron (NM_031217, intron 11 of 16) 9590 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 146-43 chr2 58234943 58235248 + 0.75 NA intron (NM_001114636, intron 1 of 13) L1MEc|LINE|L1 6285 NM_001114636 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 181.5-48 chr3 5571524 5571825 + 0.75 NA Intergenic Intergenic -321419 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 241.5-22 chr5 12105315 12105890 + 0.75 NA Intergenic Intergenic -201156 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 174-2 chr1 166189927 166190426 + 0.75 NA Intergenic Intergenic -23421 NM_001320302 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 189.25-12 chr11 90501847 90502242 + 0.75 NA intron (NR_104190, intron 1 of 6) L2c|LINE|L2 53813 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 217.5-3 chr1 240139686 240140146 + 0.75 NA intron (NM_020066, intron 2 of 17) intron (NM_020066, intron 2 of 17) 48033 NM_001348094 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 250.75-30 chr8 135572339 135572984 + 0.75 NA intron (NM_006558, intron 5 of 8) intron (NM_006558, intron 5 of 8) 115205 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 147.75 chr1 42101723 42101984 + 0.75 NA Intergenic L1ME3A|LINE|L1 -51557 NM_007102 2981 Hs.32966 NM_007102 ENSG00000044012 GUCA2B GCAP-II|UGN guanylate cyclase activator 2B protein-coding 165.5-37 chr15 57263531 57263805 + 0.75 NA intron (NM_001322152, intron 18 of 20) Tigger3b|DNA|TcMar-Tigger 14989 NR_145748 109616990 NR_145748 ENSG00000239035 SNORD13D - small nucleolar RNA, C/D box 13D snoRNA 159.75-15 chr10 63182469 63182899 + 0.75 NA intron (NM_001322258, intron 21 of 24) intron (NM_001322258, intron 21 of 24) 49356 NM_030759 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 151-18 chr14 61967402 61967809 + 0.75 NA intron (NM_001367663, intron 1 of 7) MLT1C|LTR|ERVL-MaLR 39910 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 220.5-13 chr15 38692918 38693445 + 0.75 NA Intergenic L1MA9|LINE|L1 -3417 NR_160786 221.75-10 chr12 37987188 37987598 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -329381 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 278-11 chr6 42338652 42339456 + 0.75 NA intron (NM_001297573, intron 3 of 17) intron (NM_001297573, intron 3 of 17) 112997 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 162.75-23 chr13 75097961 75098341 + 0.75 NA Intergenic Intergenic 142230 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 159.5-38 chr2 21478170 21478558 + 0.75 NA Intergenic L1MB7|LINE|L1 232288 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 189.25-49 chr6 158463671 158464025 + 0.75 NA intron (NM_020245, intron 6 of 13) L1MB3|LINE|L1 -72588 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding 196.75-22 chr2 22756915 22757392 + 0.75 NA Intergenic L1MD1|LINE|L1 220674 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 177.75 chr1 20064660 20065054 + 0.75 NA Intergenic MER5A1|DNA|hAT-Charlie -5337 NM_000929 5322 Hs.319438 NM_000929 ENSG00000127472 PLA2G5 FRFB|GV-PLA2|PLA2-10|hVPLA(2) phospholipase A2 group V protein-coding 224.5-14 chr16 1444222 1444629 + 0.75 NA promoter-TSS (NM_001143980) promoter-TSS (NM_001143980) 64 NM_001143980 645811 Hs.355232 NM_001143980 ENSG00000197599 CCDC154 C16orf29 coiled-coil domain containing 154 protein-coding 168.75-36 chr18 66673224 66673710 + 0.75 NA Intergenic MER20B|DNA|hAT-Charlie -69377 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 275.25-2 chr11 98946602 98947218 + 0.75 NA Intergenic Intergenic -74039 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 284.5-3 chr14 75950155 75950785 + 0.75 NA intron (NM_015072, intron 31 of 31) L1MC5a|LINE|L1 31525 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 214.5-5 chr11 25096462 25096945 + 0.75 NA Intergenic Intergenic 599650 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 159.25-28 chr18 4545934 4546229 + 0.75 NA Intergenic L2b|LINE|L2 -90774 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 167-57 chr4 55330006 55330445 + 0.75 NA Intergenic L1ME3|LINE|L1 -16017 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 194-26 chr17 67090271 67090688 + 0.75 NA intron (NM_001330447, intron 31 of 32) L1MD|LINE|L1 45925 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 212.5-6 chr10 63826523 63826943 + 0.75 NA Intergenic L1MC5a|LINE|L1 -304843 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 151-76 chr5 118122902 118123255 + 0.75 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -159496 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 173.75-36 chr2 178193494 178193885 + 0.75 NA promoter-TSS (NM_001201481) promoter-TSS (NM_001201481) -792 NM_001201482 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 167.25-38 chr2 159669374 159669794 + 0.75 NA Intergenic L1MEf|LINE|L1 42858 NR_110586 29994 Hs.470369 NM_013450 ENSG00000123636 BAZ2B WALp4 bromodomain adjacent to zinc finger domain 2B protein-coding 261.5-19 chr4 85695570 85696160 + 0.75 NA intron (NM_001025616, intron 2 of 9) intron (NM_001025616, intron 2 of 9) -26603 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 160.5-50 chr2 77210527 77210977 + 0.75 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 224787 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 220.75-2 chr1 150950897 150951225 + 0.75 NA exon (NM_012432, exon 13 of 22) exon (NM_012432, exon 13 of 22) 23774 NM_022075 29956 Hs.744017 NM_013384 ENSG00000143418 CERS2 L3|LASS2|SP260|TMSG1 ceramide synthase 2 protein-coding 227-3 chr14 47165376 47165979 + 0.75 NA intron (NM_001113498, intron 3 of 16) intron (NM_001113498, intron 3 of 16) 177569 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 161.25-68 chr8 81827182 81827696 + 0.75 NA intron (NR_145475, intron 3 of 6) intron (NR_145475, intron 3 of 6) 14746 NM_152837 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 180.25-6 chr10 9628505 9628842 + 0.75 NA Intergenic Intergenic -333080 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 227.5-11 chr2 53198037 53198568 + 0.75 NA Intergenic L1MA3|LINE|L1 -495687 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 198.25-12 chr12 130435188 130435711 + 0.75 NA intron (NM_001351226, intron 13 of 21) intron (NM_001351226, intron 13 of 21) 97562 NM_004764 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 332 chr1 197255997 197256787 + 0.75 NA intron (NM_001257965, intron 1 of 14) L2|LINE|L2 -11812 NM_001257966 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 300.25-4 chr13 29377745 29378243 + 0.75 NA intron (NM_001033602, intron 6 of 13) L1MD2|LINE|L1 -50666 NM_015233 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 205.75-4 chr1 94140846 94141294 + 0.75 NA Intergenic MIRb|SINE|MIR -19922 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 241-3 chr1 103929638 103930056 + 0.75 NA Intergenic Intergenic -143176 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 199-26 chr3 102202760 102203201 + 0.75 NA Intergenic L1M1|LINE|L1 39275 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 198.5-28 chr2 153214556 153214956 + 0.75 NA Intergenic Intergenic 264006 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 284.25-2 chr12 11746402 11746983 + 0.75 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 96838 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 259.5 chr1 36708316 36708761 + 0.75 NA Intergenic Intergenic -225224 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 181-56 chr8 134301386 134301791 + 0.75 NA Intergenic Intergenic -296483 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 165.25-71 chr9 36409635 36409986 + 0.75 NA Intergenic Intergenic -8612 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 272.25-15 chr5 44368620 44369333 + 0.75 NA intron (NM_004465, intron 1 of 2) intron (NM_004465, intron 1 of 2) -19756 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 280.75-4 chr14 42314243 42314738 + 0.75 NA Intergenic Intergenic 707634 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 225.75-31 chr7 107679091 107679796 + 0.75 NA intron (NM_000441, intron 6 of 20) intron (NM_000441, intron 6 of 20) -17645 NR_028137 286002 Hs.512611 NR_028137 SLC26A4-AS1 - SLC26A4 antisense RNA 1 ncRNA 146.5-7 chr1 207075794 207076211 + 0.75 NA 3' UTR (NM_006212, exon 15 of 15) 3' UTR (NM_006212, exon 15 of 15) -12858 NM_001017366 725 Hs.99886 NM_000716 ENSG00000123843 C4BPB C4BP complement component 4 binding protein beta protein-coding 179-32 chr20 21900117 21900518 + 0.75 NA Intergenic AluJb|SINE|Alu -153773 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 171.5-72 chr4 44112901 44113167 + 0.75 NA Intergenic L1MA3|LINE|L1 95972 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 184.75-45 chr2 103085806 103086261 + 0.75 NA Intergenic L1MCa|LINE|L1 -101604 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 224.75 chr1 70483387 70483779 + 0.75 NA Intergenic Intergenic 72315 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 169.75-2 chr1 73002053 73002415 + 0.75 NA Intergenic Intergenic -303936 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 311.25-9 chr4 125462740 125463376 + 0.75 NA intron (NM_001291303, intron 9 of 16) intron (NM_001291303, intron 9 of 16) -44201 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 265.25-7 chr13 35510053 35510443 + 0.75 NA intron (NM_001204197, intron 1 of 17) intron (NM_001204197, intron 1 of 17) 33499 NM_001204197 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 182-20 chr15 43234903 43235222 + 0.75 NA intron (NM_004245, intron 9 of 11) MIRb|SINE|MIR -13937 NM_001114134 2038 Hs.368642 NM_000119 ENSG00000166947 EPB42 PA|SPH5 erythrocyte membrane protein band 4.2 protein-coding 161.25-8 chr10 74753329 74753619 + 0.75 NA Intergenic Intergenic -71781 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 197.5-52 chr5 175000606 175001024 + 0.75 NA Intergenic MER74A|LTR|ERVL -5084 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 149-80 chr5 18910814 18911052 + 0.75 NA Intergenic Intergenic 975339 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 238.75-31 chr8 65691598 65691958 + 0.75 NA intron (NM_001145839, intron 3 of 6) AluSx1|SINE|Alu 21905 NM_001145838 9650 Hs.584788 NM_014637 ENSG00000066855 MTFR1 CHPPR|FAM54A2 mitochondrial fission regulator 1 protein-coding 227.25-15 chr16 4181993 4182342 + 0.75 NA Intergenic AluSq|SINE|Alu 59913 NM_001323667 6345 Hs.10041 NM_001098814 ENSG00000185739 SRL SAR sarcalumenin protein-coding 154.75-56 chr20 8574284 8574678 + 0.75 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) -256704 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 321.25-3 chr2 104060048 104060810 + 0.75 NA Intergenic L1MB4|LINE|L1 347903 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 195.5-47 chr3 190982720 190983137 + 0.75 NA Intergenic L1M5|LINE|L1 104998 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 158-44 chr20 7457886 7458116 + 0.75 NA Intergenic MSTD|LTR|ERVL-MaLR 86393 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 291.25-9 chr6 34940232 34940971 + 0.75 NA intron (NM_015245, intron 1 of 23) intron (NM_015245, intron 1 of 23) 51346 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 221.25-25 chr4 32443582 32444059 + 0.75 NA Intergenic L1ME3B|LINE|L1 92782 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 188-55 chr8 97164820 97165337 + 0.75 NA intron (NR_125390, intron 2 of 2) MIR|SINE|MIR 112850 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 230.25-28 chr5 75627077 75627645 + 0.75 NA intron (NM_001276713, intron 5 of 13) MamRep488|DNA|hAT-Tip100 15885 NM_001276713 728780 Hs.370455 NM_001271529 ENSG00000189045 ANKDD1B - ankyrin repeat and death domain containing 1B protein-coding 184.25-2 chr1 68425099 68425581 + 0.75 NA Intergenic L1M4|LINE|L1 24614 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 153.5-115 chr8 134611087 134611370 + 0.75 NA intron (NM_020863, intron 3 of 15) intron (NM_020863, intron 3 of 15) 13157 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 192.5 chr1 15712984 15713417 + 0.75 NA intron (NM_015164, intron 1 of 19) AluJr|SINE|Alu -23058 NM_207348 284723 Hs.631867 NM_207348 ENSG00000162461 SLC25A34 - solute carrier family 25 member 34 protein-coding 159.75-31 chr14 40400095 40400399 + 0.75 NA Intergenic Intergenic -554464 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 153.5-26 chr12 127348888 127349197 + 0.75 NA Intergenic L1MC1|LINE|L1 -8970 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 204.75-22 chr18 60175699 60176078 + 0.75 NA Intergenic MIR|SINE|MIR 196887 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 192.25-30 chr19 31607778 31608312 + 0.75 NA Intergenic Intergenic 15764 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 173.25-44 chr20 54004870 54005190 + 0.75 NA intron (NM_001366297, intron 4 of 8) intron (NM_001366297, intron 4 of 8) 53990 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 190-64 chr7 28831218 28831588 + 0.75 NA Intergenic AluJr|SINE|Alu 126927 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 218.25-13 chr14 28658622 28659074 + 0.75 NA Intergenic L1ME3A|LINE|L1 106471 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 159.25-74 chr8 27413295 27413703 + 0.75 NA intron (NM_173175, intron 2 of 29) L1MC4|LINE|L1 -19871 NR_106901 102465507 NR_106901 ENSG00000273836 MIR6842 hsa-mir-6842 microRNA 6842 ncRNA 234.75-17 chr3 55496661 55497254 + 0.75 NA Intergenic Intergenic -9315 NM_003392 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 235.75-4 chr10 58780310 58780796 + 0.75 NA intron (NM_001080512, intron 3 of 20) intron (NM_001080512, intron 3 of 20) 65538 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 289.75-13 chr22 31388381 31388816 + 0.75 NA Intergenic L1PA12|LINE|L1 -11006 NM_004147 4733 Hs.115242 NM_004147 ENSG00000185721 DRG1 NEDD3 developmentally regulated GTP binding protein 1 protein-coding 159.75-39 chr16 72227515 72227867 + 0.75 NA Intergenic MIRb|SINE|MIR -55241 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 173.5-92 chr9 99353024 99353346 + 0.75 NA Intergenic Intergenic 22072 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 211.5-13 chr12 99023903 99024307 + 0.75 NA intron (NM_152788, intron 17 of 25) L1ME5|LINE|L1 -69254 NR_110095 101928937 Hs.555499 NR_110095 ENSG00000258039 LOC101928937 - uncharacterized LOC101928937 ncRNA 178-26 chr16 34750362 34750686 + 0.75 NA Intergenic Intergenic -279825 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 250.5-5 chr12 60207983 60208701 + 0.75 NA Intergenic Intergenic 518972 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 184.5-61 chr5 45307916 45308216 + 0.75 NA intron (NM_021072, intron 5 of 7) MSTB1|LTR|ERVL-MaLR 388314 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 203.25-44 chr8 26852603 26853104 + 0.75 NA intron (NM_001322504, intron 1 of 1) L1M6|LINE|L1 12802 NM_033303 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 167.25-48 chr3 122885015 122885397 + 0.75 NA Intergenic Intergenic -1307 NR_024618 100129550 Hs.61558 NR_024618 ENSG00000273033 LINC02035 - long intergenic non-protein coding RNA 2035 ncRNA 232.5-6 chr10 63531867 63532366 + 0.75 NA intron (NM_001001330, intron 1 of 7) intron (NM_001001330, intron 1 of 7) -10226 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 174.5-63 chr4 168694561 168694890 + 0.75 NA intron (NM_001166108, intron 8 of 21) intron (NM_001166108, intron 8 of 21) 63147 NM_001166109 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 205-46 chr6 162102327 162102682 + 0.75 NA intron (NM_004562, intron 4 of 11) intron (NM_004562, intron 4 of 11) -624628 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 264.25-7 chr14 25537644 25538180 + 0.75 NA Intergenic Intergenic -487615 NM_001351941 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 230.5-21 chr3 125246982 125247484 + 0.75 NA intron (NM_001348434, intron 6 of 7) intron (NM_001348434, intron 6 of 7) -34468 NM_024628 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 232.5-47 chr7 40813292 40813735 + 0.75 NA intron (NM_024728, intron 14 of 14) L1PA16|LINE|L1 166426 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 205.75-13 chr10 86621184 86621681 + 0.75 NA Intergenic L1M4c|LINE|L1 -33115 NM_033282 94233 Hs.283922 NM_033282 ENSG00000122375 OPN4 MOP opsin 4 protein-coding 172-15 chr11 21361630 21361976 + 0.75 NA intron (NM_201551, intron 14 of 18) L1PB2|LINE|L1 692217 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 270.75-6 chr10 88410133 88410759 + 0.75 NA intron (NM_018363, intron 4 of 6) intron (NM_018363, intron 4 of 6) 172872 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 335-3 chr2 68426044 68426535 + 0.75 NA Intergenic AluJb|SINE|Alu 41005 NR_133923 554251 Hs.164117 NM_001024680 ENSG00000204923 FBXO48 - F-box protein 48 protein-coding 283.25-7 chr6 72841693 72842239 + 0.75 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 125787 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 209.25-49 chr8 114926784 114927183 + 0.75 NA Intergenic Charlie1a|DNA|hAT-Charlie 741030 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 214.25-27 chr5 115548756 115549208 + 0.75 NA Intergenic Charlie2b|DNA|hAT-Charlie -4207 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 169.5-9 chr10 23935630 23936169 + 0.75 NA intron (NM_001098500, intron 1 of 18) LTR33|LTR|ERVL 241172 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 247.25-3 chr1 241102802 241103215 + 0.75 NA intron (NM_001282778, intron 2 of 16) Tigger15a|DNA|TcMar-Tigger -29264 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 205.75-28 chr17 66858853 66859198 + 0.75 NA intron (NM_145811, intron 1 of 5) intron (NM_145811, intron 1 of 5) 23908 NM_145811 27091 Hs.278907 NM_014404 ENSG00000075429 CACNG5 - calcium voltage-gated channel auxiliary subunit gamma 5 protein-coding 219-22 chr6 36473605 36474131 + 0.75 NA intron (NM_001286579, intron 2 of 4) intron (NM_001286579, intron 2 of 4) 30868 NR_104480 222658 Hs.188757 NM_173562 ENSG00000112078 KCTD20 C6orf69|dJ108K11.3 potassium channel tetramerization domain containing 20 protein-coding 214.75-8 chr1 188445964 188446416 + 0.75 NA Intergenic Intergenic 1002562 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 267-2 chr12 24867666 24868146 + 0.75 NA intron (NM_001178091, intron 4 of 9) AluSx|SINE|Alu 34316 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 225.5-25 chr2 173611683 173612018 + 0.75 NA Intergenic MIR|SINE|MIR 256978 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 172-37 chr2 62522071 62522434 + 0.75 NA Intergenic L1ME3A|LINE|L1 -16057 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 300.5-7 chr14 64531239 64532000 + 0.75 NA intron (NM_014950, intron 2 of 2) intron (NM_014950, intron 2 of 2) 8749 NR_110550 102723809 Hs.667192 NR_110550 ENSG00000259116 LOC102723809 - uncharacterized LOC102723809 ncRNA 146-30 chr17 53057132 53057479 + 0.75 NA Intergenic L1MA4|LINE|L1 71800 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 163.5-111 chr8 50342098 50342334 + 0.75 NA intron (NR_135797, intron 2 of 20) intron (NR_135797, intron 2 of 20) 178085 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 244.75-6 chr13 84728973 84729581 + 0.75 NA Intergenic Intergenic -54377 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 222.25-36 chr5 60917327 60917812 + 0.75 NA intron (NM_001007234, intron 4 of 5) intron (NM_001007234, intron 4 of 5) 27501 NM_001007234 1161 Hs.435237 NM_000082 ENSG00000049167 ERCC8 CKN1|CSA|UVSS2 ERCC excision repair 8, CSA ubiquitin ligase complex subunit protein-coding 216.25-25 chr4 145807931 145808611 + 0.75 NA intron (NM_178835, intron 8 of 14) intron (NM_178835, intron 8 of 14) 128067 NM_001080531 646603 NM_001080531 ENSG00000237136 C4orf51 - chromosome 4 open reading frame 51 protein-coding 153.5-69 chr4 18895132 18895461 + 0.75 NA Intergenic Intergenic -873421 NM_001365659 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 252.75-28 chr8 88427815 88428354 + 0.75 NA Intergenic Intergenic -100601 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 239.75-23 chr8 13458610 13458982 + 0.75 NA intron (NM_024767, intron 2 of 4) intron (NM_024767, intron 2 of 4) 56055 NM_024767 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 364.75-2 chr14 46435857 46436737 + 0.75 NA intron (NR_102702, intron 3 of 3) L1MEd|LINE|L1 -35062 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 148.25-48 chr2 114471500 114471880 + 0.75 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 10113 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 192.5-52 chr6 54222700 54223141 + 0.75 NA intron (NM_138569, intron 10 of 12) L1MA9|LINE|L1 -85521 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 205.5-11 chr13 55162573 55163084 + 0.75 NA Intergenic Intergenic -11626 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 244.5-14 chr16 76594022 76594696 + 0.75 NA Intergenic Intergenic -40639 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 280.5-4 chr18 1664301 1664796 + 0.75 NA Intergenic Intergenic -304919 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 147.75-27 chr12 22996464 22996740 + 0.75 NA Intergenic LTR72B|LTR|ERV1 -179034 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 191.5-19 chr14 44981519 44982003 + 0.75 NA intron (NR_131765, intron 1 of 19) intron (NR_131765, intron 1 of 19) 19571 NM_015091 23116 Hs.371078 NM_015091 ENSG00000198718 TOGARAM1 FAM179B|KIAA0423 TOG array regulator of axonemal microtubules 1 protein-coding 249-10 chr4 141344117 141344700 + 0.75 NA Intergenic Intergenic -11791 NR_121625 100507639 Hs.535010 NR_121625 LINC02432 - long intergenic non-protein coding RNA 2432 ncRNA 158-34 chr2 88926908 88927361 + 0.75 NA Intergenic Intergenic 114764 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 293.5-11 chr6 165003175 165003965 + 0.75 NA Intergenic Intergenic -181507 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 174.25-10 chr10 55456539 55457053 + 0.75 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -142246 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 199-6 chr12 59651051 59651372 + 0.75 NA intron (NM_001270623, intron 1 of 5) intron (NM_001270623, intron 1 of 5) -38159 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 157.75-89 chr5 74678572 74678908 + 0.75 NA intron (NM_001292004, intron 1 of 13) L1M5|LINE|L1 -6493 NM_000521 3074 Hs.69293 NM_000521 ENSG00000049860 HEXB ENC-1AS|HEL-248|HEL-S-111 hexosaminidase subunit beta protein-coding 173.5-57 chr3 190960845 190961171 + 0.75 NA Intergenic Intergenic 83078 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 171.5-3 chr1 48362255 48362770 + 0.75 NA intron (NM_019073, intron 9 of 12) intron (NM_019073, intron 9 of 12) 109692 NM_001286238 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 226.5-6 chr11 39963105 39963571 + 0.75 NA Intergenic Intergenic 329792 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 153.5-34 chr15 47891127 47891567 + 0.75 NA Intergenic MER57C2|LTR|ERV1 -45111 NR_120336 101928442 Hs.242804 NR_120336 ENSG00000259572 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 221.75-17 chr17 30786144 30786705 + 0.75 NA intron (NM_015986, intron 6 of 7) AluSg7|SINE|Alu 38268 NM_015986 51379 Hs.649372 NM_015986 ENSG00000176390 CRLF3 CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2 cytokine receptor like factor 3 protein-coding 289.75-15 chr4 37053827 37054547 + 0.75 NA Intergenic L1P1|LINE|L1 52408 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 262.25-6 chr14 62031321 62031903 + 0.75 NA intron (NM_001367661, intron 4 of 8) MIR3|SINE|MIR -85745 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 244.75-13 chr20 60301645 60302323 + 0.75 NA intron (NR_046099, intron 3 of 4) intron (NR_046099, intron 3 of 4) -6490 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 156.5-52 chr2 76478863 76479211 + 0.75 NA Intergenic Intergenic -506928 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 230-24 chr5 17395481 17395922 + 0.75 NA Intergenic L1MD3|LINE|L1 -8318 NR_134275 101929544 Hs.23725 NR_134273 ENSG00000248455 LINC02217 - long intergenic non-protein coding RNA 2217 ncRNA 193-29 chr2 210911255 210911642 + 0.75 NA Intergenic L1MC3|LINE|L1 293877 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 202.25-12 chr11 55734589 55734887 + 0.75 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR -38700 NM_001001967 390142 Hs.553743 NM_001001967 ENSG00000279761 OR5D13 - olfactory receptor family 5 subfamily D member 13 (gene/pseudogene) protein-coding 246.25-17 chr17 57561243 57561887 + 0.75 NA intron (NM_001322250, intron 7 of 13) intron (NM_001322250, intron 7 of 13) -37968 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 326-2 chr14 59055722 59056269 + 0.75 NA Intergenic MIR|SINE|MIR -132672 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 166.25-55 chr5 58921818 58922207 + 0.75 NA Intergenic Tigger3a|DNA|TcMar-Tigger 77886 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 212.25-17 chr16 47208929 47209515 + 0.75 NA intron (NM_030790, intron 14 of 17) intron (NM_030790, intron 14 of 17) 65154 NR_110904 101927102 Hs.634652 NR_110903 ITFG1-AS1 - ITFG1 antisense RNA 1 ncRNA 196-45 chr7 48518382 48518863 + 0.75 NA intron (NM_152701, intron 52 of 61) (GCTTTT)n|Simple_repeat|Simple_repeat 347164 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 193-36 chr4 73654434 73654729 + 0.75 NA Intergenic MIRb|SINE|MIR -33950 NM_001270392 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 204.75-33 chr3 62535601 62536050 + 0.75 NA intron (NM_183393, intron 12 of 26) intron (NM_183393, intron 12 of 26) -162275 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 167.25-43 chr21 29089811 29090252 + 0.75 NA intron (NM_001286622, intron 2 of 8) intron (NM_001286622, intron 2 of 8) -2223 NM_001286619 56911 Hs.222802 NM_020152 ENSG00000156265 MAP3K7CL C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4 MAP3K7 C-terminal like protein-coding 170.75-36 chr2 193229990 193230409 + 0.75 NA Intergenic L1MEd|LINE|L1 480354 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 151-29 chr17 65949796 65950160 + 0.75 NA intron (NM_001353129, intron 18 of 26) L1M4|LINE|L1 -123435 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 152.5-6 chr1 235728469 235728930 + 0.75 NA intron (NM_000081, intron 37 of 52) intron (NM_000081, intron 37 of 52) -77945 NM_001098721 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 149.75-67 chr4 163959269 163959515 + 0.75 NA intron (NM_001166373, intron 2 of 7) L1PA14|LINE|L1 238319 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 219.75-14 chr14 57835401 57835826 + 0.75 NA intron (NM_001352012, intron 1 of 8) intron (NM_001352012, intron 1 of 8) 29386 NM_001352013 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 200-30 chr3 42509450 42509804 + 0.75 NA intron (NM_001251884, intron 1 of 11) intron (NM_001251884, intron 1 of 11) 6984 NM_004624 7433 Hs.348500 NM_004624 ENSG00000114812 VIPR1 HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R vasoactive intestinal peptide receptor 1 protein-coding 160.75-44 chr16 59471014 59471297 + 0.75 NA Intergenic MER58B|DNA|hAT-Charlie 284036 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 170-48 chr5 37612962 37613311 + 0.75 NA intron (NM_001345998, intron 10 of 17) intron (NM_001345998, intron 10 of 17) 221686 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 173.5-27 chr16 62866747 62867013 + 0.75 NA Intergenic Intergenic -830442 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 186.25-48 chr5 10546115 10546673 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR -17676 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 155.25-78 chr6 106262542 106262817 + 0.75 NA intron (NM_001286111, intron 2 of 4) L1PA8|LINE|L1 53587 NR_104403 9474 Hs.486063 NM_004849 ENSG00000057663 ATG5 APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5 autophagy related 5 protein-coding 157.75-88 chr5 65322996 65323406 + 0.75 NA intron (NR_135689, intron 9 of 25) L1PA4|LINE|L1 158719 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 281.25-6 chr15 96141104 96141899 + 0.75 NA intron (NR_125738, intron 3 of 4) intron (NR_125738, intron 3 of 4) -13660 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 181.25-48 chr5 61458249 61458555 + 0.75 NA intron (NM_020928, intron 1 of 13) intron (NM_020928, intron 1 of 13) 126144 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 267.75-10 chr21 14542061 14542593 + 0.75 NA intron (NM_001286523, intron 1 of 8) MIR|SINE|MIR 3988 NM_022136 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 206.5-30 chr4 44668567 44669000 + 0.75 NA Intergenic Intergenic -9612 NM_001345868 60558 Hs.546419 NM_021927 ENSG00000151806 GUF1 EF-4|EF4|EIEE40 GUF1 homolog, GTPase protein-coding 192.5-37 chr3 105914241 105914725 + 0.75 NA Intergenic Intergenic -45082 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 283.25-11 chrX 50635073 50635502 + 0.75 NA exon (NM_020717, exon 4 of 9) exon (NM_020717, exon 4 of 9) -164462 NM_001013742 139189 Hs.38132 NM_001013742 ENSG00000274588 DGKK - diacylglycerol kinase kappa protein-coding 242.5-22 chr3 85780203 85780738 + 0.75 NA intron (NM_001256504, intron 3 of 10) intron (NM_001256504, intron 3 of 10) 47580 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 159.5-45 chr2 194061899 194062268 + 0.75 NA Intergenic Intergenic -282186 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 200.5-54 chr6 110122510 110123045 + 0.75 NA intron (NM_001024935, intron 3 of 9) Tigger2|DNA|TcMar-Tigger 56893 NM_003931 8936 Hs.75850 NM_003931 ENSG00000112290 WASF1 SCAR1|WAVE|WAVE1 WASP family member 1 protein-coding 157.5-98 chr7 103513603 103513836 + 0.75 NA non-coding (NR_110141, exon 4 of 4) non-coding (NR_110141, exon 4 of 4) -67512 NR_135802 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 171-2 chr1 55836097 55836431 + 0.75 NA Intergenic Intergenic 108699 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 174.75-11 chr10 65676815 65677164 + 0.75 NA intron (NR_120647, intron 3 of 5) L1M5|LINE|L1 105564 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 154.25-45 chr2 77049707 77050114 + 0.75 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 63945 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 175.5-2 chr1 35516836 35517328 + 0.75 NA intron (NM_024874, intron 2 of 20) L1PA14|LINE|L1 40321 NM_024874 79932 Hs.456507 NM_024874 ENSG00000142687 KIAA0319L AAVR|AAVRL KIAA0319 like protein-coding 235.75-20 chr22 28358487 28359279 + 0.75 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -100986 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 158.5-21 chr14 48740718 48741079 + 0.75 NA Intergenic Intergenic 845482 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 197.75-3 chr1 79695212 79695515 + 0.75 NA Intergenic MSTC|LTR|ERVL-MaLR -688633 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 221.25-6 chr10 27524329 27524818 + 0.75 NA intron (NR_046172, intron 2 of 5) Charlie7|DNA|hAT-Charlie 20269 NM_001256411 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 241.5-15 chr21 14391160 14391659 + 0.75 NA Intergenic AluYm1|SINE|Alu -8263 NM_006948 6782 Hs.352341 NM_006948 ENSG00000155304 HSPA13 STCH heat shock protein family A (Hsp70) member 13 protein-coding 207-15 chr19 44446574 44446991 + 0.75 NA intron (NM_001278510, intron 2 of 5) intron (NM_001278510, intron 2 of 5) 1690 NR_103551 7772 Hs.709348 NM_014518 ENSG00000278318 ZNF229 - zinc finger protein 229 protein-coding 166.75-90 chr8 64906035 64906536 + 0.75 NA Intergenic L1M6|LINE|L1 -107548 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 221.25-9 chr11 115446610 115447012 + 0.75 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 50055 NR_135103 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 282-11 chr6 141334927 141335490 + 0.75 NA Intergenic Intergenic 651394 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 239.75-21 chr5 127272816 127273278 + 0.75 NA Intergenic L1PA12|LINE|L1 -17717 NM_001308121 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 159.25-17 chr14 45648861 45649203 + 0.75 NA Intergenic MIR|SINE|MIR 66570 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 166.75-47 chr20 16194352 16194730 + 0.75 NA Intergenic Intergenic -208659 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 305-4 chr22 26245567 26246349 + 0.75 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 76484 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 270.5-21 chr8 112066630 112067127 + 0.75 NA Intergenic L1PA4|LINE|L1 -576615 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 189.25-33 chr3 7104464 7104927 + 0.75 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -210678 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 250.5-16 chr2 201768840 201769371 + 0.75 NA intron (NM_020919, intron 1 of 33) intron (NM_020919, intron 1 of 33) 11828 NM_001135745 57679 Hs.471096 NM_020919 ENSG00000003393 ALS2 ALS2CR6|ALSJ|IAHSP|PLSJ alsin Rho guanine nucleotide exchange factor ALS2 protein-coding 167.5-52 chr2 241336142 241336444 + 0.75 NA intron (NM_001349311, intron 6 of 13) intron (NM_001349311, intron 6 of 13) -19992 NM_014808 9855 Hs.726316 NM_014808 ENSG00000006607 FARP2 FIR|FRG|PLEKHC3 FERM, ARH/RhoGEF and pleckstrin domain protein 2 protein-coding 169.75-12 chr1 205170944 205171351 + 0.75 NA intron (NM_199462, intron 2 of 11) intron (NM_199462, intron 2 of 11) 40555 NM_015375 25778 Hs.6874 NM_015375 ENSG00000133059 DSTYK CAKUT1|DustyPK|HDCMD38P|RIP5|RIPK5|SPG23 dual serine/threonine and tyrosine protein kinase protein-coding 173.5-13 chr10 81431965 81432423 + 0.75 NA Intergenic L1MD|LINE|L1 -443000 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 151-48 chr2 231276613 231276902 + 0.75 NA exon (NM_001352756, exon 15 of 21) exon (NM_001352756, exon 15 of 21) 78126 NM_001352756 80210 Hs.162411 NM_025139 ENSG00000135931 ARMC9 ARM|JBTS30|KU-MEL-1|NS21 armadillo repeat containing 9 protein-coding 246.25-12 chr12 29929062 29929646 + 0.75 NA Intergenic L2a|LINE|L2 -144595 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 245.75-4 chr10 43005089 43005529 + 0.75 NA Intergenic L1MC3|LINE|L1 7746 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 149.5-43 chr2 73574304 73574643 + 0.75 NA intron (NM_015120, intron 16 of 22) Charlie7a|DNA|hAT-Charlie 67949 NM_003960 9027 Hs.14637 NM_003960 ENSG00000144035 NAT8 ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510 N-acetyltransferase 8 (putative) protein-coding 177.75-48 chr3 95911798 95912262 + 0.75 NA Intergenic MER52D|LTR|ERV1 -228837 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 165-41 chr2 125679282 125679524 + 0.75 NA Intergenic L1PB1|LINE|L1 438582 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 400.25-4 chr6 99229920 99230877 + 0.75 NA Intergenic L1M5|LINE|L1 105789 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 185.5-33 chr19 40021666 40022068 + 0.75 NA TTS (NM_001297763) TTS (NM_001297763) 24807 NM_178544 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 213.5-39 chr6 48019757 48020100 + 0.75 NA intron (NM_207499, intron 1 of 2) L2c|LINE|L2 48761 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 186.25-61 chr8 18988706 18989219 + 0.75 NA intron (NM_015310, intron 1 of 15) intron (NM_015310, intron 1 of 15) 24741 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 147.75-29 chr12 60097655 60097918 + 0.75 NA Intergenic Intergenic 408416 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 163-45 chr2 116874033 116874395 + 0.75 NA Intergenic L1PA3|LINE|L1 -940477 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 153.75-5 chr10 74897469 74897819 + 0.75 NA intron (NM_001370144, intron 3 of 15) intron (NM_001370144, intron 3 of 15) -15142 NR_134476 101929165 Hs.670533 NR_134476 LOC101929165 - uncharacterized LOC101929165 ncRNA 181-34 chr4 88623013 88623313 + 0.75 NA intron (NM_001318505, intron 3 of 8) MER5A|DNA|hAT-Charlie 30683 NM_014606 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 181-14 chr13 26181474 26181786 + 0.75 NA intron (NM_183045, intron 5 of 5) MER70-int|LTR|ERVL 40127 NM_183044 6049 Hs.136885 NM_005977 ENSG00000127870 RNF6 - ring finger protein 6 protein-coding 232.5-37 chr4 141731458 141732092 + 0.75 NA intron (NR_037840, intron 7 of 7) MIR|SINE|MIR 95192 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 218-29 chr8 118850877 118851248 + 0.75 NA Intergenic AluJb|SINE|Alu 100823 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 174-3 chr1 170401779 170402095 + 0.75 NA Intergenic L1PA16|LINE|L1 -117729 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 203-13 chr14 53166937 53167440 + 0.75 NA Intergenic Intergenic 13834 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 231.25-9 chr11 115495546 115496000 + 0.75 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 8642 NM_001098517 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 162.25-52 chr3 117766824 117767310 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -76142 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 188.25-14 chr14 69082864 69083360 + 0.75 NA intron (NM_003861, intron 6 of 8) intron (NM_003861, intron 6 of 8) 69487 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 204-20 chr18 35483387 35483689 + 0.75 NA intron (NM_194281, intron 1 of 4) intron (NM_194281, intron 1 of 4) 14070 NM_001308064 125476 Hs.464903 NM_194281 ENSG00000153391 INO80C C18orf37|IES6|hIes6 INO80 complex subunit C protein-coding 279.75-3 chr13 77944114 77944922 + 0.75 NA intron (NM_000115, intron 1 of 7) L2c|LINE|L2 -24750 NM_001201397 1910 Hs.82002 NM_000115 ENSG00000136160 EDNRB ABCDS|ET-B|ET-BR|ETB|ETB1|ETBR|ETRB|HSCR|HSCR2|WS4A endothelin receptor type B protein-coding 232.75-18 chr20 53768414 53768929 + 0.75 NA Intergenic Intergenic 107038 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 157.5-41 chr19 33558005 33558347 + 0.75 NA Intergenic Intergenic -36385 NM_001166056 5184 Hs.36473 NM_000285 ENSG00000124299 PEPD PROLIDASE peptidase D protein-coding 240.25-11 chr16 49313379 49313726 + 0.75 NA Intergenic Intergenic -31714 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 168.25-3 chr1 211733723 211733996 + 0.75 NA Intergenic Tigger17a|DNA|TcMar-Tigger 58097 NR_148994 91548 Hs.367839 NR_148994 LOC91548 - uncharacterized LOC91548 ncRNA 178.25-63 chr6 119575274 119575516 + 0.75 NA intron (NR_134600, intron 2 of 3) L1MB1|LINE|L1 25587 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 215.5-22 chr18 55005861 55006316 + 0.75 NA Intergenic L1MB8|LINE|L1 -46627 NM_025214 80323 Hs.120790 NM_025214 ENSG00000166510 CCDC68 SE57-1 coiled-coil domain containing 68 protein-coding 162-40 chr20 12373756 12374015 + 0.75 NA Intergenic LTR16|LTR|ERVL 455992 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 265.5-22 chr8 82886610 82887287 + 0.75 NA Intergenic L1MB4|LINE|L1 -25156 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 190.5-60 chr8 13973955 13974382 + 0.75 NA Intergenic Intergenic 344478 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 162.75-91 chr9 98164161 98164586 + 0.75 NA intron (NM_052820, intron 1 of 11) intron (NM_052820, intron 1 of 11) 8519 NM_003389 7464 Hs.113094 NM_003389 ENSG00000106789 CORO2A CLIPINB|IR10|WDR2 coronin 2A protein-coding 229.25-27 chrX 86647751 86648124 + 0.75 NA intron (NM_001139515, intron 3 of 11) intron (NM_001139515, intron 3 of 11) 384969 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 160.75-76 chr3 82676821 82677176 + 0.75 NA Intergenic Intergenic 690856 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 175.25-39 chr2 208837603 208838073 + 0.75 NA Intergenic Intergenic 295196 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 216.25-18 chr19 51068455 51068889 + 0.75 NA Intergenic Intergenic -3580 NM_001348177 26085 Hs.165296 NM_015596 ENSG00000167759 KLK13 KLK-L4|KLKL4 kallikrein related peptidase 13 protein-coding 200.5-60 chr8 129099851 129100522 + 0.75 NA Intergenic Intergenic -134185 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 294.25-10 chr3 76748131 76748702 + 0.75 NA Intergenic Intergenic -291683 NM_002942 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 209.25-2 chr1 107649839 107650203 + 0.75 NA intron (NM_006113, intron 19 of 26) L2a|LINE|L2 38478 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 148.25-33 chr15 91187014 91187439 + 0.75 NA intron (NM_001323040, intron 2 of 12) intron (NM_001323040, intron 2 of 12) 85430 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 164.25-20 chr11 76384189 76384524 + 0.75 NA 3' UTR (NM_001305225, exon 1 of 1) 3' UTR (NM_001305225, exon 1 of 1) 3033 NM_001347885 100506127 Hs.503319 NM_001013634 ENSG00000179240 GVQW3 - GVQW motif containing 3 protein-coding 247-2 chr1 174030189 174030684 + 0.75 NA Intergenic AluJo|SINE|Alu -37364 NM_172071 149041 Hs.30258 NM_172071 ENSG00000135870 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 173.75-70 chr8 111379000 111379372 + 0.75 NA intron (NR_146282, intron 1 of 3) L1M5|LINE|L1 2547 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 192.5-61 chr9 29887093 29887580 + 0.75 NA Intergenic Intergenic 521118 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 165.75-47 chr2 155907896 155908222 + 0.75 NA Intergenic Intergenic 346872 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 154.5-45 chr2 59625196 59625532 + 0.75 NA Intergenic MIR|SINE|MIR 407656 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 290.75-9 chr8 114691749 114692265 + 0.75 NA Intergenic L1MA9|LINE|L1 976006 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 185.75-15 chr13 29762273 29762614 + 0.75 NA Intergenic L3|LINE|CR1 88174 NM_007106 5412 Hs.145575 NM_007106 ENSG00000122042 UBL3 HCG-1|PNSC1 ubiquitin like 3 protein-coding 271-12 chr8 114056643 114057427 + 0.75 NA Intergenic HAL1|LINE|L1 -620096 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 213.5-32 chr3 173320417 173320986 + 0.75 NA Intergenic L1MEc|LINE|L1 -75251 NM_001365936 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 219.25-45 chr8 30923177 30923648 + 0.75 NA Intergenic HAL1ME|LINE|L1 -10404 NM_001350162 56154 Hs.458316 NM_001350162 ENSG00000133863 TEX15 CT42|SPGF25 testis expressed 15, meiosis and synapsis associated protein-coding 222.75-13 chr15 95809901 95810301 + 0.75 NA Intergenic L1ME5|LINE|L1 317740 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 277.5-9 chr2 125575489 125576079 + 0.75 NA Intergenic (AACAT)n|Simple_repeat|Simple_repeat 542201 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 234.25-20 chr7 45940511 45941103 + 0.75 NA Intergenic LTR12|LTR|ERV1 -19535 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 175.75-14 chr13 54235035 54235416 + 0.75 NA Intergenic L1M5|LINE|L1 76823 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 160.5-56 chr20 46420608 46420887 + 0.75 NA intron (NR_146919, intron 1 of 3) L1ME3G|LINE|L1 -13696 NM_182764 63916 Hs.210469 NM_022086 ENSG00000062598 ELMO2 CED-12|CED12|Ced-12A|ELMO-2|VMPI engulfment and cell motility 2 protein-coding 190.75-54 chr5 40180316 40180771 + 0.75 NA Intergenic L1PA7|LINE|L1 128252 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 205.75-27 chr16 70582914 70583205 + 0.75 NA intron (NM_152456, intron 1 of 6) intron (NM_152456, intron 1 of 6) 3160 NM_001172771 146433 Hs.461214 NM_152456 ENSG00000157368 IL34 C16orf77|IL-34 interleukin 34 protein-coding 202.5-43 chr3 176633507 176633991 + 0.75 NA intron (NR_109968, intron 2 of 2) intron (NR_109968, intron 2 of 2) 1783 NR_109968 100505547 Hs.253350 NR_109968 LINC01208 - long intergenic non-protein coding RNA 1208 ncRNA 222.25-14 chr15 57432971 57433362 + 0.75 NA intron (NM_001252335, intron 2 of 19) intron (NM_001252335, intron 2 of 19) 56661 NM_032866 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 223.75-8 chr16 64319274 64319681 + 0.75 NA Intergenic Intergenic 802586 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 213-20 chr3 106632527 106633049 + 0.75 NA Intergenic Intergenic 607850 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 236.75-11 chr2 114831825 114832303 + 0.75 NA intron (NR_132105, intron 1 of 1) intron (NR_132105, intron 1 of 1) 1484 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 179.75-23 chr18 32534130 32534754 + 0.75 NA Intergenic Intergenic 22779 NR_003558 441818 Hs.549773 NR_003558 ENSG00000260389 WBP11P1 HsT3017 WW domain binding protein 11 pseudogene 1 pseudo 162.25-70 chr5 54839933 54840178 + 0.75 NA Intergenic Charlie23a|DNA|hAT-Charlie -95797 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 226.25-33 chr9 26095012 26095416 + 0.75 NA intron (NM_001004352, intron 3 of 6) L1MEc|LINE|L1 28539 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 184.5-51 chr3 34826717 34827116 + 0.75 NA Intergenic Intergenic 567107 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 248.75-7 chr2 10156213 10156575 + 0.75 NA intron (NR_161344, intron 3 of 3) MamRep605|LTR?|LTR? 15012 NR_161344 348738 Hs.454981 NR_161344 ENSG00000171848 C2orf48 - chromosome 2 open reading frame 48 ncRNA 174.5-60 chr4 64869672 64870029 + 0.75 NA Intergenic L2a|LINE|L2 134650 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 163.25-6 chr1 105560613 105560831 + 0.75 NA Intergenic Intergenic 58213 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 170.75-40 chr22_KI270736v1_random 181168 181398 + 0.75 NA NA Intergenic NA NA 196.25-48 chr6 70303249 70303665 + 0.75 NA promoter-TSS (NM_001851) promoter-TSS (NM_001851) -373 NM_001851 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 151.25-83 chr7 44845500 44845703 + 0.75 NA intron (NM_012412, intron 1 of 4) intron (NM_012412, intron 1 of 4) 2525 NM_201517 94239 Hs.488189 NM_012412 ENSG00000105968 H2AFV H2A.Z-2|H2AV H2A histone family member V protein-coding 167.25-61 chr5 43541877 43542228 + 0.75 NA intron (NM_006451, intron 4 of 10) AluSz|SINE|Alu 15025 NM_006451 10605 Hs.482038 NM_006451 ENSG00000172239 PAIP1 - poly(A) binding protein interacting protein 1 protein-coding 147.5-72 chr4 145730611 145730857 + 0.75 NA intron (NM_001080531, intron 5 of 5) MER113B|DNA|hAT-Charlie 50530 NM_001080531 646603 NM_001080531 ENSG00000237136 C4orf51 - chromosome 4 open reading frame 51 protein-coding 207-24 chr3 30595152 30595592 + 0.75 NA Intergenic L1MD1|LINE|L1 -11130 NM_001024847 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 158.25-31 chr12 57879115 57879384 + 0.75 NA intron (NR_148947, intron 1 of 3) intron (NR_148947, intron 1 of 3) 17233 NR_148947 283387 Hs.727244 NR_148947 ENSG00000245651 LOC283387 - uncharacterized LOC283387 ncRNA 222.5-52 chr8 62390459 62390888 + 0.75 NA intron (NM_001304533, intron 1 of 6) L1PA12|LINE|L1 141819 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 228.25-29 chr7 106336260 106336657 + 0.75 NA Intergenic MER51-int|LTR|ERV1 -51475 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 178-45 chr3 173497731 173498065 + 0.75 NA intron (NM_014932, intron 2 of 6) intron (NM_014932, intron 2 of 6) -86536 NM_001365928 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 272-2 chr10 6504563 6505217 + 0.75 NA intron (NM_001282645, intron 3 of 16) intron (NM_001282645, intron 3 of 16) 75386 NM_006257 5588 Hs.498570 NM_006257 ENSG00000065675 PRKCQ PRKCT|nPKC-theta protein kinase C theta protein-coding 155.75-66 chr3 88177294 88177650 + 0.75 NA Intergenic Intergenic 27513 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 168.75-37 chr19 29019669 29019928 + 0.75 NA Intergenic MIRb|SINE|MIR 17243 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 159.5-34 chr18 54830033 54830293 + 0.75 NA intron (NM_004163, intron 1 of 5) intron (NM_004163, intron 1 of 5) 1686 NM_004163 5874 Hs.25318 NM_004163 ENSG00000041353 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 158.25-91 chr5 118327447 118327667 + 0.75 NA Intergenic Intergenic 44983 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 222.5-8 chr10 10903452 10903840 + 0.75 NA intron (NM_001326328, intron 2 of 15) intron (NM_001326328, intron 2 of 15) 48517 NR_024411 254312 Hs.498620 NR_015413 ENSG00000229240 LINC00710 - long intergenic non-protein coding RNA 710 ncRNA 156.5-31 chr12 132976163 132976630 + 0.75 NA Intergenic L1M1|LINE|L1 -9971 NM_001330514 7574 Hs.489608 NM_019591 ENSG00000198393 ZNF26 HEL-179|KOX20 zinc finger protein 26 protein-coding 225.75-22 chr4 81275900 81276546 + 0.75 NA Intergenic L1MA9|LINE|L1 -61001 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 174.5-67 chr5 125899313 125899639 + 0.75 NA Intergenic Intergenic -280101 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 184-31 chr20 53442565 53443004 + 0.75 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -109986 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 196-26 chr2 159569362 159569807 + 0.75 NA intron (NM_001329857, intron 1 of 36) Charlie14a|DNA|hAT-Charlie -45710 NR_110587 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 247.5-24 chr4 36178381 36178998 + 0.75 NA intron (NR_146894, intron 8 of 32) intron (NR_146894, intron 8 of 32) 65250 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 305.75-6 chr2 117320075 117320851 + 0.75 NA Intergenic Intergenic -494228 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 288.25-6 chr20 42519641 42520190 + 0.75 NA intron (NM_133170, intron 7 of 31) L1MEd|LINE|L1 -165568 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 167-81 chr7 145537718 145538163 + 0.75 NA Intergenic Intergenic -701887 NM_022445 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 218-19 chr4 42421528 42422093 + 0.75 NA intron (NM_001105529, intron 34 of 35) intron (NM_001105529, intron 34 of 35) 24322 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 205.75-40 chr3 145531478 145532051 + 0.75 NA Intergenic Intergenic 537421 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 214-9 chr12 102397449 102397922 + 0.75 NA 3' UTR (NM_001111284, exon 4 of 4) 3' UTR (NM_001111284, exon 4 of 4) 80865 NM_001111284 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 169.25-67 chr9 124645618 124645959 + 0.75 NA intron (NM_033334, intron 2 of 9) L1MCa|LINE|L1 -12648 NR_038975 100379345 Hs.660412 NR_038975 ENSG00000224020 MIR181A2HG - MIR181A2 host gene ncRNA 165-20 chr12 67897896 67898261 + 0.75 NA Intergenic Intergenic -31157 NR_120456 101927922 Hs.450769 NR_120456 ENSG00000255772 LINC01479 HRAT39 long intergenic non-protein coding RNA 1479 ncRNA 153.75-2 chr1 179174422 179174688 + 0.75 NA intron (NM_007314, intron 1 of 11) (AT)n|Simple_repeat|Simple_repeat -31479 NM_005158 27 Hs.159472 NM_005158 ENSG00000143322 ABL2 ABLL|ARG ABL proto-oncogene 2, non-receptor tyrosine kinase protein-coding 219-21 chr5 143706053 143706417 + 0.75 NA Intergenic MIR3|SINE|MIR 26375 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 179.25-82 chr9 99059864 99060159 + 0.75 NA intron (NM_001855, intron 36 of 41) intron (NM_001855, intron 36 of 41) -45102 NM_001130916 7046 Hs.494622 NM_004612 ENSG00000106799 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I transforming growth factor beta receptor 1 protein-coding 296.5-15 chr5 36985717 36986325 + 0.75 NA exon (NM_133433, exon 10 of 47) exon (NM_133433, exon 10 of 47) 109252 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 233.75-18 chr3 129538780 129539276 + 0.75 NA Intergenic Intergenic -4186 NM_153833 132243 Hs.97358 NM_153833 ENSG00000178804 H1FOO H1.8|H1oo|osH1 H1 histone family member O oocyte specific protein-coding 220.25-39 chr7 10720286 10720732 + 0.75 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) 17833 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 177.25-23 chr15 55434713 55435139 + 0.75 NA non-coding (NR_037923, exon 7 of 16) non-coding (NR_037923, exon 7 of 16) -26416 NM_001204451 9236 Hs.285051 NM_004748 ENSG00000260916 CCPG1 CPR8 cell cycle progression 1 protein-coding 160.5-25 chr12 87898007 87898396 + 0.75 NA Intergenic (TATG)n|Simple_repeat|Simple_repeat -113490 NR_033410 400058 Hs.572212 NR_033410 MKRN9P MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3 makorin ring finger protein 9, pseudogene pseudo 356.25-3 chr2 154164560 154165325 + 0.75 NA intron (NM_052917, intron 4 of 12) intron (NM_052917, intron 4 of 12) 220548 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 171.25-2 chr1 104403990 104404382 + 0.75 NA Intergenic HAL1|LINE|L1 331163 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 187-58 chr8 66563288 66563829 + 0.75 NA 3' UTR (NM_001080416, exon 16 of 16) 3' UTR (NM_001080416, exon 16 of 16) 49660 NM_001294282 4603 Hs.445898 NM_001080416 ENSG00000185697 MYBL1 A-MYB|AMYB MYB proto-oncogene like 1 protein-coding 252.25-8 chr2 37068817 37069302 + 0.75 NA intron (NM_019024, intron 7 of 35) intron (NM_019024, intron 7 of 35) 15313 NM_019024 54497 Hs.744084 NM_019024 ENSG00000008869 HEATR5B - HEAT repeat containing 5B protein-coding 381 chr1 222172147 222172817 + 0.75 NA Intergenic L1PA16|LINE|L1 -193962 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 180.75-19 chr15 62798889 62799355 + 0.75 NA intron (NM_015059, intron 45 of 55) intron (NM_015059, intron 45 of 55) -24835 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 277-9 chr5 29415567 29416516 + 0.75 NA Intergenic L1MB1|LINE|L1 -20065 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 179.75-12 chr12 13441837 13442140 + 0.75 NA Intergenic Intergenic -65243 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 217.75-39 chr9 91154551 91155077 + 0.75 NA intron (NR_135306, intron 2 of 2) intron (NR_135306, intron 2 of 2) 35752 NR_135306 100129347 Hs.522287 NR_135306 ENSG00000229694 LINC00484 C9orf73 long intergenic non-protein coding RNA 484 ncRNA 230.75-4 chr1 236105146 236105618 + 0.75 NA Intergenic MIRc|SINE|MIR -37157 NM_003272 7107 Hs.498160 NM_003272 ENSG00000077585 GPR137B TM7SF1 G protein-coupled receptor 137B protein-coding 215.5-45 chr6 119328485 119328928 + 0.75 NA intron (NM_005907, intron 2 of 12) intron (NM_005907, intron 2 of 12) 21055 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 165.75-22 chr11 63149798 63150121 + 0.75 NA Intergenic Ricksha_c|DNA|MULE-MuDR -5738 NM_173586 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 256-10 chr6 49917365 49917907 + 0.75 NA Intergenic Intergenic 31808 NR_163261 403339 Hs.745543 NM_001166478 ENSG00000214643 DEFB133 - defensin beta 133 pseudo 214.75-35 chr4 125341893 125342424 + 0.75 NA intron (NM_001291303, intron 1 of 16) intron (NM_001291303, intron 1 of 16) 25746 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 149.75-73 chr5 61153398 61153735 + 0.75 NA TTS (NM_174889) TTS (NM_174889) -8750 NR_109908 101928630 Hs.575209 NR_109908 SMIM15-AS1 CTC-436P18.1 SMIM15 antisense RNA 1 ncRNA 148.5-16 chr11 39585355 39585587 + 0.75 NA Intergenic MIRc|SINE|MIR 707659 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 255.5-32 chr5 59072690 59073182 + 0.75 NA intron (NM_006203, intron 5 of 14) intron (NM_006203, intron 5 of 14) -33460 NM_001197222 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 241.75-29 chr9 89104843 89105347 + 0.75 NA intron (NM_016848, intron 2 of 11) intron (NM_016848, intron 2 of 11) 73723 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 152.5-113 chr9 83110914 83111274 + 0.75 NA Intergenic L1MEd|LINE|L1 -47952 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 179.75-15 chr13 70493935 70494373 + 0.75 NA Intergenic Intergenic -385661 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 157.25-50 chr2 121912436 121912696 + 0.75 NA Intergenic MLT1F2|LTR|ERVL-MaLR 156915 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 240-26 chr6 46336306 46336909 + 0.75 NA intron (NR_125838, intron 2 of 3) intron (NR_125838, intron 2 of 3) -10715 NM_005822 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 189.25-60 chrX 45083967 45084274 + 0.75 NA intron (NR_111960, intron 22 of 27) intron (NR_111960, intron 22 of 27) 116756 NM_024689 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 281.75 chr1 23026749 23027175 + 0.75 NA intron (NM_015013, intron 1 of 18) intron (NM_015013, intron 1 of 18) 7494 NM_001363654 23028 Hs.591518 NM_015013 ENSG00000004487 KDM1A AOF2|BHC110|CPRF|KDM1|LSD1 lysine demethylase 1A protein-coding 227.75-20 chr20 22436338 22436889 + 0.75 NA Intergenic Zaphod2|DNA|hAT-Tip100 -15970 NR_027089 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 205.25 chr1 32942635 32943194 + 0.75 NA intron (NM_153341, intron 6 of 8) AluY|SINE|Alu 21895 NM_001127361 127544 Hs.591504 NM_153341 ENSG00000116514 RNF19B IBRDC3|NKLAM ring finger protein 19B protein-coding 226.5-9 chr14 63282921 63283489 + 0.75 NA exon (NM_020663, exon 4 of 5) exon (NM_020663, exon 4 of 5) 35730 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 232.75-34 chr8 129927293 129927652 + 0.75 NA intron (NM_001353256, intron 2 of 13) intron (NM_001353256, intron 2 of 13) 12339 NM_001353295 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 388.5 chr16 34585828 34586508 + 0.75 NA Intergenic Intergenic -204688 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 214.75-7 chr1 185365976 185366443 + 0.75 NA Intergenic L2c|LINE|L2 -31170 NR_038424 100288079 Hs.131220 NR_038424 ENSG00000261024 GS1-279B7.1 - microtubule associated protein 1 light chain 3 beta pseudogene pseudo 261.75-2 chr1 195255397 195256047 + 0.75 NA Intergenic Intergenic 832993 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 156.75-63 chr3 85198692 85199042 + 0.75 NA intron (NM_001167674, intron 1 of 9) Mam_R4|LINE|Dong-R4 -136603 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 245.5-11 chr11 99596269 99596773 + 0.75 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 40376 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 258.75 chr1 218322325 218322787 + 0.75 NA intron (NM_016052, intron 4 of 4) intron (NM_016052, intron 4 of 4) -22728 NR_138149 7042 Hs.133379 NM_003238 ENSG00000092969 TGFB2 G-TSF|LDS4|TGF-beta2 transforming growth factor beta 2 protein-coding 323.75-4 chr2 178601514 178602254 + 0.75 NA exon (NM_133432, exon 114 of 192) exon (NM_133432, exon 114 of 192) 78693 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 194.25-21 chr2 138223055 138223343 + 0.75 NA Intergenic Intergenic 121315 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 179.75-5 chr10 28672936 28673227 + 0.75 NA Intergenic Intergenic -4440 NM_012342 25805 Hs.533336 NM_012342 ENSG00000095739 BAMBI NMA BMP and activin membrane bound inhibitor protein-coding 195.5-11 chr12 24678729 24679161 + 0.75 NA Intergenic Intergenic -94777 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 281.5-18 chr2 51140921 51141491 + 0.75 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 108605 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 182.5-74 chr7 87174504 87174829 + 0.75 NA exon (NM_001142327, exon 7 of 18) exon (NM_001142327, exon 7 of 18) 22112 NM_021145 9988 Hs.196129 NM_021145 ENSG00000135164 DMTF1 DMP1|DMTF|MRUL|hDMP1 cyclin D binding myb like transcription factor 1 protein-coding 159.25-81 chr8 132167251 132167600 + 0.75 NA intron (NM_001204824, intron 8 of 14) L1MB7|LINE|L1 -62160 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 159.75-3 chr1 106170123 106170385 + 0.75 NA Intergenic Intergenic -142001 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 148-78 chr5 171210573 171210912 + 0.75 NA intron (NM_022897, intron 20 of 27) AluSc|SINE|Alu -98506 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 185.75-6 chr10 31291623 31291942 + 0.75 NA Intergenic Intergenic -26635 NM_001323638 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 248.75-12 chr4 31870252 31870855 + 0.75 NA Intergenic L1MA3|LINE|L1 -126826 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 218.25-37 chr5 88597632 88598163 + 0.75 NA intron (NR_152235, intron 2 of 3) intron (NR_152235, intron 2 of 3) 69042 NR_030741 407047 NR_030741 ENSG00000284447 MIR9-2 MIRN9-2|hsa-mir-9-2|miRNA9-2|mir-9-2 microRNA 9-2 ncRNA 201.5-53 chr5 107008273 107008614 + 0.75 NA intron (NR_104671, intron 1 of 3) intron (NR_104671, intron 1 of 3) 2571 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 265.75-5 chr15 101168390 101168922 + 0.75 NA Intergenic MER63A|DNA|hAT-Blackjack 83392 NM_014918 22856 Hs.110488 NM_014918 ENSG00000131873 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 177-27 chr2 62746896 62747325 + 0.75 NA intron (NM_001142615, intron 2 of 22) intron (NM_001142615, intron 2 of 22) 40213 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 190.75-56 chr5 118338302 118338618 + 0.75 NA Intergenic L1PB4|LINE|L1 55886 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 259.5-17 chr6 156886147 156886570 + 0.75 NA intron (NM_020732, intron 3 of 19) AluSq2|SINE|Alu -106627 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA 199-39 chr8 93876242 93876581 + 0.75 NA Intergenic Intergenic 39708 NR_039602 100616169 NR_039602 ENSG00000284288 MIR378D2 mir-378d-2 microRNA 378d-2 ncRNA 228-18 chr3 51890792 51891275 + 0.75 NA Intergenic AluSq|SINE|Alu 12320 NM_152397 132141 Hs.671210 NM_152397 ENSG00000173389 IQCF1 - IQ motif containing F1 protein-coding 226-15 chr22 34890769 34891309 + 0.75 NA intron (NR_138042, intron 3 of 4) THE1D|LTR|ERVL-MaLR 106877 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 255-14 chr7 7801276 7801845 + 0.75 NA intron (NM_001302350, intron 3 of 4) intron (NM_001302350, intron 3 of 4) -82953 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 171.75-88 chr8 114921161 114921551 + 0.75 NA Intergenic Intergenic 746657 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 226.25-28 chr8 21156938 21157428 + 0.75 NA Intergenic L1MC|LINE|L1 -141056 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 188.5-52 chr5 27255939 27256443 + 0.75 NA Intergenic Intergenic -216101 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 153.5-55 chr2 216933340 216933794 + 0.75 NA Intergenic Intergenic 62795 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 169.25-57 chr8 120931103 120931387 + 0.75 NA Intergenic MLT1F|LTR|ERVL-MaLR -119199 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 172.25-17 chr12 71902478 71902755 + 0.75 NA intron (NR_027449, intron 9 of 15) L1PA15|LINE|L1 -36229 NM_173353 121278 Hs.736576 NM_173353 ENSG00000139287 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 209.75-35 chr6 105919705 105920014 + 0.75 NA Intergenic L2b|LINE|L2 -166477 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 179.5-39 chr2 104441660 104442011 + 0.75 NA intron (NR_015399, intron 1 of 3) intron (NR_015399, intron 1 of 3) 7488 NR_015399 150568 Hs.107284 NR_015399 ENSG00000235597 LINC01102 - long intergenic non-protein coding RNA 1102 ncRNA 261.75-15 chr4 15504566 15505068 + 0.75 NA intron (NM_001080522, intron 7 of 37) intron (NM_001080522, intron 7 of 37) 34935 NM_001164720 57545 Hs.590928 NM_020785 ENSG00000048342 CC2D2A JBTS9|MKS6 coiled-coil and C2 domain containing 2A protein-coding 246.25-37 chr8 91374504 91375108 + 0.75 NA intron (NM_134266, intron 15 of 18) L1PA17|LINE|L1 125487 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 300.5-9 chr15 38152952 38153560 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 -80266 NR_147199 107984773 Hs.285193 NR_147199 ENSG00000236914 LINC01852 - long intergenic non-protein coding RNA 1852 ncRNA 222.75-9 chr13 54093641 54094147 + 0.75 NA Intergenic L1M2|LINE|L1 38977 NR_108063 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 214.75-36 chr4 127564101 127564650 + 0.75 NA Intergenic Intergenic -68582 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 166.75-81 chr7 44568875 44569246 + 0.75 NA intron (NM_019082, intron 10 of 13) intron (NM_019082, intron 10 of 13) 5478 NM_019082 54606 Hs.654762 NM_019082 ENSG00000136271 DDX56 DDX21|DDX26|NOH61 DEAD-box helicase 56 protein-coding 202.5-34 chr2 214804006 214804543 + 0.75 NA intron (NM_001282545, intron 1 of 6) intron (NM_001282545, intron 1 of 6) 5409 NM_000465 580 Hs.591642 NM_000465 ENSG00000138376 BARD1 - BRCA1 associated RING domain 1 protein-coding 216-30 chr8 15682721 15683118 + 0.75 NA intron (NM_001356429, intron 6 of 10) L1PA17|LINE|L1 142656 NM_001356429 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 166 chr1 13824632 13825004 + 0.75 NA 3' UTR (NM_001135610, exon 8 of 8) 3' UTR (NM_001135610, exon 8 of 8) 75403 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 149.75-5 chr1 109095868 109096328 + 0.75 NA non-coding (NR_136243, exon 2 of 2) non-coding (NR_136243, exon 2 of 2) -4095 NR_003023 677766 Hs.550815 NR_003023 ENSG00000278249 SCARNA2 HBII-382|mgU2-25/61 small Cajal body-specific RNA 2 ncRNA 226-17 chr3 139091942 139092343 + 0.75 NA Intergenic Intergenic -12043 NR_026783 60467 Hs.512673 NM_021812 ENSG00000232416 BPESC1 NCRNA00187 blepharophimosis, epicanthus inversus and ptosis candidate 1 ncRNA 151.25-9 chr10 86608238 86608513 + 0.75 NA Intergenic L1MEg|LINE|L1 -46172 NM_033282 94233 Hs.283922 NM_033282 ENSG00000122375 OPN4 MOP opsin 4 protein-coding 191.5-37 chr3 111943929 111944270 + 0.75 NA intron (NM_001134437, intron 8 of 17) L1ME2|LINE|L1 -34927 NR_073571 55347 Hs.477115 NM_018394 ENSG00000144827 ABHD10 - abhydrolase domain containing 10 protein-coding 169.5-48 chr2 83292825 83293358 + 0.75 NA Intergenic Intergenic -229723 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 225.25-22 chr20 40466291 40466674 + 0.75 NA Intergenic L1M5|LINE|L1 222754 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 193-5 chr1 160016282 160016584 + 0.75 NA Intergenic Intergenic 15557 NM_145167 93183 Hs.552810 NM_145167 ENSG00000143315 PIGM GPI-MT-I phosphatidylinositol glycan anchor biosynthesis class M protein-coding 179.75-7 chr11 31073649 31073959 + 0.75 NA intron (NM_001367979, intron 18 of 38) intron (NM_001367979, intron 18 of 38) -81118 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 303.5-6 chr14 28571143 28571588 + 0.75 NA Intergenic Intergenic 193954 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 336.25-7 chr7 93988903 93989547 + 0.75 NA intron (NR_133909, intron 3 of 4) AluSx1|SINE|Alu 15130 NM_005868 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 185-2 chr1 29230297 29230728 + 0.75 NA intron (NM_001349712, intron 1 of 11) MIRb|SINE|MIR 422 NR_146213 51102 Hs.183646 NM_016011 ENSG00000116353 MECR CGI-63|DYTOABG|ETR1|FASN2B|NRBF1 mitochondrial trans-2-enoyl-CoA reductase protein-coding 249.75-17 chr4 142428339 142429006 + 0.75 NA intron (NM_001331040, intron 5 of 25) Tigger12|DNA|TcMar-Tigger 417863 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 184.5-66 chr6 133018046 133018377 + 0.75 NA Intergenic Intergenic -69869 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 253.5-2 chr1 209200881 209201360 + 0.75 NA Intergenic MER2|DNA|TcMar-Tigger -124336 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 231.75-11 chr15 83538333 83538810 + 0.75 NA intron (NM_001324186, intron 2 of 9) L1ME3A|LINE|L1 47957 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 158-43 chr2 174197406 174197752 + 0.75 NA intron (NM_001011708, intron 3 of 9) intron (NM_001011708, intron 3 of 9) 50953 NM_013341 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 163.75-35 chr20 41173233 41173501 + 0.75 NA intron (NM_182811, intron 27 of 31) intron (NM_182811, intron 27 of 31) 4344 NR_106931 102466912 NR_106931 ENSG00000276169 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 160-45 chr2 132608712 132608951 + 0.75 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 61374 NM_001321234 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 162.5-10 chr1 156196397 156196666 + 0.75 NA intron (NR_104408, intron 2 of 3) intron (NR_104408, intron 2 of 3) 2427 NM_014655 9673 Hs.532375 NM_014655 ENSG00000160785 SLC25A44 - solute carrier family 25 member 44 protein-coding 200.25-27 chr18 2208400 2208923 + 0.75 NA Intergenic Intergenic 362844 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 159-45 chr20 7912343 7912732 + 0.75 NA intron (NM_017545, intron 3 of 7) intron (NM_017545, intron 3 of 7) 27921 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 160-92 chr9 86829739 86830054 + 0.75 NA Intergenic MIR|SINE|MIR 117610 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 159-37 chr2 134309289 134309700 + 0.75 NA intron (NM_001371457, intron 3 of 16) L1MB8|LINE|L1 55422 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 285.25-7 chr5 54186046 54186815 + 0.75 NA intron (NM_019087, intron 1 of 4) UCON29|DNA|PiggyBac? 124143 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 216.5-46 chr8 103593271 103593778 + 0.75 NA intron (NM_001348497, intron 1 of 22) Charlie1a|DNA|hAT-Charlie -91614 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 276.5-18 chr9 90852686 90853231 + 0.75 NA intron (NM_001174167, intron 3 of 13) intron (NM_001174167, intron 3 of 13) 25538 NM_001174167 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 169.5-41 chr2 12310210 12310732 + 0.75 NA intron (NR_110196, intron 4 of 5) MIR3|SINE|MIR 111341 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 338 chr12 19912220 19912997 + 0.75 NA Intergenic L2b|LINE|L2 -102077 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 166.5-25 chr14 73841695 73842154 + 0.75 NA Intergenic AluJr4|SINE|Alu -9907 NM_001371330 156.25-30 chr16 77354977 77355267 + 0.75 NA intron (NM_199355, intron 9 of 22) intron (NM_199355, intron 9 of 22) 79912 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 180.75-37 chr20 53403739 53404168 + 0.75 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -148817 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 242.5-15 chr2 201782670 201783247 + 0.75 NA Intergenic MER4D|LTR|ERV1 -2025 NM_020919 57679 Hs.471096 NM_020919 ENSG00000003393 ALS2 ALS2CR6|ALSJ|IAHSP|PLSJ alsin Rho guanine nucleotide exchange factor ALS2 protein-coding 173.5-23 chr14 31425056 31425471 + 0.75 NA intron (NR_110045, intron 2 of 3) intron (NR_110045, intron 2 of 3) 4505 NR_110045 101927124 Hs.647561 NR_110045 ENSG00000250365 LOC101927124 - uncharacterized LOC101927124 ncRNA 155.75-4 chr1 86928716 86929139 + 0.75 NA intron (NM_012262, intron 1 of 6) intron (NM_012262, intron 1 of 6) 14292 NM_012262 9653 Hs.743280 NM_012262 ENSG00000153936 HS2ST1 dJ604K5.2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 313.75-9 chr4 86382478 86383355 + 0.75 NA intron (NM_002753, intron 1 of 13) MIR|SINE|MIR -12049 NM_001318068 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 194.25-44 chr7 105467861 105468378 + 0.75 NA intron (NM_001318164, intron 12 of 15) AluSx|SINE|Alu 40401 NM_001318163 54517 Hs.520619 NM_019042 ENSG00000091127 PUS7 IDDABS pseudouridine synthase 7 protein-coding 155.75-100 chr8 49129326 49129638 + 0.75 NA Intergenic Intergenic 57138 NM_001256598 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 272-10 chr4 132361508 132362049 + 0.75 NA Intergenic AluSz6|SINE|Alu -229311 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 190-12 chr12 8873989 8874430 + 0.75 NA intron (NM_001282424, intron 22 of 24) AluSx1|SINE|Alu 29205 NM_001282424 144568 Hs.620532 NM_144670 ENSG00000166535 A2ML1 CPAMD9|OMS|p170 alpha-2-macroglobulin like 1 protein-coding 189-19 chr14 58352006 58352374 + 0.75 NA intron (NM_002892, intron 16 of 23) intron (NM_002892, intron 16 of 23) -43740 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 175.75-39 chr20 62142302 62142706 + 0.75 NA intron (NM_002792, intron 1 of 6) intron (NM_002792, intron 1 of 6) 890 NM_002792 5688 Hs.233952 NM_002792 ENSG00000101182 PSMA7 C6|HEL-S-276|HSPC|RC6-1|XAPC7 proteasome subunit alpha 7 protein-coding 217-9 chr16 12250313 12250859 + 0.75 NA intron (NM_032167, intron 14 of 20) intron (NM_032167, intron 14 of 20) 273852 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 185.25-16 chr12 126147813 126148106 + 0.75 NA Intergenic Intergenic 51967 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 193.75-50 chr4 185664924 185665297 + 0.75 NA intron (NM_001145672, intron 4 of 20) intron (NM_001145672, intron 4 of 20) -8141 NM_001145674 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 289.5-13 chr4 111682193 111682747 + 0.75 NA Intergenic L4_A_Mam|LINE|RTE-X -462984 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 193.5-37 chr2 55857764 55858156 + 0.75 NA Intergenic Intergenic 65822 NM_001039348 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 230.5-10 chr12 111532038 111532461 + 0.75 NA intron (NR_132311, intron 5 of 23) AluSz|SINE|Alu 67066 NM_002973 6311 Hs.76253 NM_002973 ENSG00000204842 ATXN2 ATX2|SCA2|TNRC13 ataxin 2 protein-coding 224.25-33 chr7 15634687 15635230 + 0.75 NA intron (NM_005924, intron 1 of 2) intron (NM_005924, intron 1 of 2) -32989 NR_134258 105375166 Hs.658822 NR_134258 ENSG00000237070 LOC105375166 - uncharacterized LOC105375166 ncRNA 254.5-15 chr18 72419963 72420538 + 0.75 NA Intergenic THE1C-int|LTR|ERVL-MaLR 124092 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 188.5-50 chr4 63346558 63347030 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 1062656 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 267.25-13 chr7 16874933 16875339 + 0.75 NA intron (NM_176813, intron 2 of 7) AluSz|SINE|Alu 6847 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 192.25-56 chr6 71115147 71115653 + 0.75 NA Intergenic Intergenic -158340 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 196-42 chr6 81722383 81722689 + 0.75 NA Intergenic MER5A|DNA|hAT-Charlie 30145 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 233.25-22 chr3 35375391 35375843 + 0.75 NA intron (NR_110817, intron 1 of 3) L1M5|LINE|L1 18406 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 293 chr10 43092124 43092518 + 0.75 NA intron (NM_020630, intron 1 of 18) L1MB3|LINE|L1 -12411 NM_001355216 5979 Hs.350321 NM_000323 ENSG00000165731 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 ret proto-oncogene protein-coding 158-48 chr3 26853958 26854360 + 0.75 NA Intergenic Intergenic 159602 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 193.25-69 chr9 131155251 131155568 + 0.75 NA intron (NM_001318324, intron 17 of 35) L1PB1|LINE|L1 29823 NM_001318324 8021 Hs.654530 NM_005085 ENSG00000126883 NUP214 CAIN|CAN nucleoporin 214 protein-coding 167.25-17 chr12 42916955 42917479 + 0.75 NA Intergenic Intergenic 225001 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 167-55 chr3 108390170 108390535 + 0.75 NA intron (NM_014981, intron 38 of 41) L1MC5a|LINE|L1 78567 NM_001282557 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 149.75-111 chrX 137379902 137380317 + 0.75 NA Intergenic Intergenic -186018 NM_001330661 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 260.5-22 chr9 71359428 71359910 + 0.75 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 87302 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 147.5-52 chr20 11825243 11825532 + 0.75 NA intron (NR_110635, intron 1 of 1) (AT)n|Simple_repeat|Simple_repeat 45328 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 208-6 chr10 89513210 89513834 + 0.75 NA intron (NM_213606, intron 2 of 7) intron (NM_213606, intron 2 of 7) 22072 NM_213606 387700 Hs.530338 NM_213606 ENSG00000152779 SLC16A12 CJMG|CRT2|CTRCT47|MCT12 solute carrier family 16 member 12 protein-coding 255.5-27 chr4 60589619 60590376 + 0.75 NA Intergenic L2c|LINE|L2 -332622 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 147.5-10 chr10 57305109 57305572 + 0.75 NA promoter-TSS (NR_037490) promoter-TSS (NR_037490) -781 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 240-24 chr4 146740267 146740676 + 0.75 NA intron (NR_133922, intron 12 of 13) L1PA3|LINE|L1 101578 NM_004575 5458 Hs.266 NM_004575 ENSG00000151615 POU4F2 BRN3.2|BRN3B|Brn-3b POU class 4 homeobox 2 protein-coding 196-37 chr4 64823531 64823847 + 0.75 NA Intergenic Intergenic 180811 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 159-68 chr5 152982244 152982654 + 0.75 NA Intergenic MER34A|LTR|ERV1 -10100 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 164.5-72 chr5 110767698 110768160 + 0.75 NA Intergenic MIRb|SINE|MIR 28922 NM_138773 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 166-78 chr8 87082342 87082771 + 0.75 NA intron (NM_173538, intron 4 of 10) L1MEf|LINE|L1 216141 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 169.75-53 chr4 85362347 85362793 + 0.75 NA Intergenic LTR9D|LTR|ERV1 -112580 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 204.5-25 chr3 150314129 150314468 + 0.75 NA intron (NR_110187, intron 1 of 1) L1ME4a|LINE|L1 9449 NR_110186 101928022 Hs.555199 NR_110186 LINC01214 - long intergenic non-protein coding RNA 1214 ncRNA 148-48 chr2 44914282 44914687 + 0.75 NA Intergenic Intergenic 24404 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 238.25-9 chr17 55843592 55844200 + 0.75 NA Intergenic Intergenic 92791 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 188.25-67 chr9 29354323 29354689 + 0.75 NA Intergenic L1ME3E|LINE|L1 -140905 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 313-3 chr2 53238374 53238940 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -529126 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 301.25-6 chr2 213120714 213121272 + 0.75 NA intron (NM_001371277, intron 3 of 6) intron (NM_001371277, intron 3 of 6) 29444 NM_016260 22807 Hs.604950 NM_016260 ENSG00000030419 IKZF2 ANF1A2|HELIOS|ZNF1A2|ZNFN1A2 IKAROS family zinc finger 2 protein-coding 157.75-98 chr6 77773121 77773386 + 0.75 NA intron (NM_001282136, intron 3 of 4) L1MA3|LINE|L1 120214 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 195.75-42 chr22 32949457 32949919 + 0.75 NA intron (NM_003490, intron 3 of 13) intron (NM_003490, intron 3 of 13) 57133 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 313-2 chr14 79078533 79079191 + 0.75 NA intron (NR_073547, intron 14 of 20) MIR3|SINE|MIR -121120 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 193.75-18 chr12 54949274 54949638 + 0.75 NA non-coding (NR_147063, exon 12 of 12) non-coding (NR_147063, exon 12 of 12) 24276 NM_001351153 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|ITPRID3|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 271-13 chrX 21257301 21257978 + 0.75 NA Intergenic MIR3|SINE|MIR -116779 NM_001168648 22866 Hs.555917 NM_014927 ENSG00000149970 CNKSR2 CNK2|KSR2|MAGUIN|MRXSHG connector enhancer of kinase suppressor of Ras 2 protein-coding 154-27 chr13 100350194 100350532 + 0.75 NA intron (NR_148031, intron 18 of 22) intron (NR_148031, intron 18 of 22) 130652 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 205-35 chr3 157252605 157253030 + 0.75 NA Intergenic Intergenic -92057 NM_020307 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 260 chr1 69262939 69263500 + 0.75 NA Intergenic (T)n|Simple_repeat|Simple_repeat -170036 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 179.75 chr1 27731595 27732004 + 0.75 NA intron (NM_001143913, intron 3 of 8) intron (NM_001143913, intron 3 of 8) 5838 NM_001143913 199870 Hs.469359 NM_152660 ENSG00000009780 FAM76A - family with sequence similarity 76 member A protein-coding 281.75-17 chr7 12881683 12882220 + 0.75 NA Intergenic Intergenic 194318 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 373.75 chr18 63718715 63719559 + 0.75 NA intron (NM_001370475, intron 5 of 7) L2a|LINE|L2 16177 NM_001370475 89778 Hs.350958 NM_080475 ENSG00000206072 SERPINB11 EPIPIN|SERPIN11 serpin family B member 11 (gene/pseudogene) protein-coding 170.5-19 chr14 57199554 57200109 + 0.75 NA TTS (NM_006544) TTS (NM_006544) 69074 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 173.75-58 chr6 70429366 70429715 + 0.75 NA intron (NM_020819, intron 3 of 20) AluSx|SINE|Alu -15582 NR_147708 105377849 Hs.669000 NR_147708 ENSG00000224349 LOC105377849 - uncharacterized LOC105377849 ncRNA 209-22 chr2 66674059 66674587 + 0.75 NA intron (NR_110156, intron 2 of 5) MIRb|SINE|MIR 28904 NR_110265 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 219.75-11 chr12 2356795 2357282 + 0.75 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 87262 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 293.75-14 chr7 104639648 104640352 + 0.75 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 164092 NR_034142 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 171-46 chr4 27729580 27729981 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 512301 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 248.75-15 chr5 30580575 30581016 + 0.75 NA Intergenic Intergenic -612891 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 156.25-14 chr11 111300560 111300867 + 0.75 NA promoter-TSS (NM_001302647) promoter-TSS (NM_001302647) -481 NM_001302645 399948 Hs.729225 NM_207429 COLCA1 C11orf92|CASC12|LOH11CR1F colorectal cancer associated 1 protein-coding 175.75-25 chr17 57912482 57912841 + 0.75 NA intron (NM_001271875, intron 1 of 10) intron (NM_001271875, intron 1 of 10) -9272 NM_001292025 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 158.25-6 chr1 187593956 187594292 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger 150496 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 228-12 chr19 30997898 30998363 + 0.75 NA Intergenic LTR29|LTR|ERV1 -169380 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 276.25-15 chr8 130838712 130839192 + 0.75 NA intron (NM_001115, intron 11 of 17) L2c|LINE|L2 201957 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 245.5-15 chr16 20751496 20751980 + 0.75 NA Intergenic Intergenic -9920 NM_001304550 55623 Hs.700004 NM_017736 ENSG00000066654 THUMPD1 Tan1 THUMP domain containing 1 protein-coding 171.75-41 chr2 119884269 119884611 + 0.75 NA intron (NM_002830, intron 8 of 26) MER58B|DNA|hAT-Charlie 124518 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 154.25-49 chr2 164823234 164823494 + 0.75 NA intron (NM_001278458, intron 2 of 16) intron (NM_001278458, intron 2 of 16) -17385 NR_110574 101929633 Hs.570267 NR_110574 LOC101929633 - uncharacterized LOC101929633 ncRNA 258.75-3 chr10 50564495 50564883 + 0.75 NA intron (NM_147156, intron 2 of 10) intron (NM_147156, intron 2 of 10) 59267 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 225-18 chr5 104346576 104346950 + 0.75 NA Intergenic Intergenic -752711 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 170.75-3 chr1 192816027 192816490 + 0.75 NA Intergenic Intergenic 7219 NM_002923 5997 Hs.78944 NM_002923 ENSG00000116741 RGS2 G0S8 regulator of G protein signaling 2 protein-coding 147.75-25 chr11 72988830 72989137 + 0.75 NA exon (NM_014824, exon 6 of 20) exon (NM_014824, exon 6 of 20) 153335 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 145.75 chr1 48900120 48900396 + 0.75 NA intron (NM_001323575, intron 5 of 12) L2a|LINE|L2 -123289 NM_001349794 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 150.25-47 chr2 28622390 28622636 + 0.75 NA intron (NR_138141, intron 27 of 35) intron (NR_138141, intron 27 of 35) 56156 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 226.25-23 chr7 11713110 11713435 + 0.75 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 118926 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 207.25-25 chr17 60983994 60984527 + 0.75 NA intron (NM_001330413, intron 14 of 25) intron (NM_001330413, intron 14 of 25) 306409 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 228.75-6 chr13 33485083 33485613 + 0.75 NA intron (NM_001243476, intron 4 of 17) intron (NM_001243476, intron 4 of 17) -150082 NR_146541 105370154 NR_146541 LINC02344 - long intergenic non-protein coding RNA 2344 ncRNA 169-56 chr6 53079748 53080069 + 0.75 NA intron (NM_033481, intron 5 of 12) intron (NM_033481, intron 5 of 12) 8935 NM_012347 26268 Hs.216653 NM_012347 ENSG00000112146 FBXO9 FBX9|NY-REN-57|VCIA1|dJ341E18.2 F-box protein 9 protein-coding 272-7 chr18 7721055 7721544 + 0.75 NA intron (NM_002845, intron 1 of 30) L1MB2|LINE|L1 153983 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 180.75-76 chr9 28158084 28158610 + 0.75 NA intron (NM_152570, intron 5 of 6) THE1B|LTR|ERVL-MaLR 560958 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 209.75-18 chr18 7565687 7566163 + 0.75 NA Intergenic Intergenic -1391 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 227.5-9 chr14 60820361 60820748 + 0.75 NA intron (NM_002431, intron 6 of 7) intron (NM_002431, intron 6 of 7) 85793 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 165-34 chr18 57450150 57450497 + 0.75 NA intron (NM_004852, intron 1 of 1) AluSx1|SINE|Alu 14949 NM_004852 9480 Hs.194725 NM_004852 ENSG00000119547 ONECUT2 OC-2|OC2 one cut homeobox 2 protein-coding 223.75-25 chr8 123535176 123535511 + 0.75 NA intron (NM_058229, intron 1 of 8) intron (NM_058229, intron 1 of 8) -3200 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 259.25-2 chr12 13225292 13226127 + 0.75 NA Intergenic MER117|DNA|hAT-Charlie 28983 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 223.25-12 chr2 34648366 34648752 + 0.75 NA Intergenic HAL1|LINE|L1 -28998 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 147.25-97 chr8 57797699 57798001 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger 51701 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 178.75-46 chr4 10211133 10211399 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -94467 NM_005112 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 241.5-3 chr10 63289353 63289777 + 0.75 NA intron (NM_001322258, intron 2 of 24) intron (NM_001322258, intron 2 of 24) -20322 NM_001318153 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 159.25-86 chrX 34400109 34400439 + 0.75 NA Intergenic Intergenic 257011 NM_031442 83604 Hs.8769 NM_031442 ENSG00000147027 TMEM47 BCMP1|TM4SF10|VAB-9 transmembrane protein 47 protein-coding 267.75-13 chr5 19874931 19875397 + 0.75 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) 11108 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 210.75-31 chr3 101977626 101978114 + 0.75 NA intron (NR_026934, intron 2 of 3) L1ME3G|LINE|L1 37011 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 172.5-34 chr2 28423104 28423564 + 0.75 NA Intergenic Intergenic -28662 NR_103831 403150 Hs.562970 NR_103831 ENSG00000229951 FLJ31356 - uncharacterized protein FLJ31356 ncRNA 173-51 chr4 30357209 30357530 + 0.75 NA Intergenic L1PA15|LINE|L1 -363000 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 168-15 chr10 104837470 104837744 + 0.75 NA intron (NM_014978, intron 1 of 26) intron (NM_014978, intron 1 of 26) -171391 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 200-8 chr10 82642489 82643105 + 0.75 NA intron (NR_163253, intron 3 of 10) L1MC5|LINE|L1 -409877 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 161.5-88 chr8 77735140 77735419 + 0.75 NA Intergenic Intergenic 284582 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 169.25-7 chr12 1641873 1642303 + 0.75 NA intron (NM_032642, intron 4 of 4) intron (NM_032642, intron 4 of 4) 12857 NM_032642 81029 Hs.306051 NM_030775 ENSG00000111186 WNT5B - Wnt family member 5B protein-coding 200.25-37 chr4 138007640 138007984 + 0.75 NA Intergenic Intergenic -81202 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 206-37 chr9 33176938 33177249 + 0.75 NA intron (NR_108108, intron 1 of 3) MLT1G1-int|LTR|ERVL-MaLR 9234 NR_108108 101929639 Hs.545818 NR_108108 ENSG00000233554 B4GALT1-AS1 - B4GALT1 antisense RNA 1 ncRNA 216-15 chr14 57629410 57629879 + 0.75 NA intron (NM_001352014, intron 1 of 9) intron (NM_001352014, intron 1 of 9) -135787 NM_001283057 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 157.25-9 chr10 64425411 64425841 + 0.75 NA Intergenic Intergenic -399902 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 238.75-19 chr2 152029948 152030536 + 0.75 NA intron (NM_000726, intron 2 of 13) intron (NM_000726, intron 2 of 13) -56264 NM_001330116 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 164.75-11 chr10 108772279 108772571 + 0.75 NA Intergenic L1MEf|LINE|L1 -703132 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 178.5-17 chr12 49500849 49501228 + 0.75 NA intron (NM_001293285, intron 10 of 14) AluJb|SINE|Alu -37992 NM_012284 23416 Hs.64064 NM_012284 ENSG00000135519 KCNH3 BEC1|ELK2|Kv12.2 potassium voltage-gated channel subfamily H member 3 protein-coding 210-50 chr7 3222425 3222812 + 0.75 NA Intergenic AluJb|SINE|Alu -64045 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 208.5-32 chr2 56437776 56438321 + 0.75 NA Intergenic L1PA2|LINE|L1 -252278 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 228-17 chr3 25714150 25714574 + 0.75 NA Intergenic Intergenic -49423 NR_039644 100616477 NR_039644 ENSG00000283971 MIR4442 mir-4442 microRNA 4442 ncRNA 326-8 chr8 128520968 128521723 + 0.75 NA intron (NR_121672, intron 2 of 7) MER103C|DNA|hAT-Charlie 43334 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 210.5-12 chr14 49095230 49095708 + 0.75 NA Intergenic L2b|LINE|L2 490911 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 155.25-93 chr8 118906343 118906587 + 0.75 NA Intergenic MIR|SINE|MIR 45420 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 189-35 chr2 215939222 215939516 + 0.75 NA Intergenic LTR82B|LTR|ERVL 74182 NM_018000 55686 Hs.620391 NM_018000 ENSG00000118242 MREG DSU|WDT2 melanoregulin protein-coding 182.5-40 chr3 39878116 39878606 + 0.75 NA intron (NM_001284424, intron 1 of 15) L1PA3|LINE|L1 68701 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 308 chr1 219818221 219818927 + 0.75 NA Intergenic MIRb|SINE|MIR 110077 NM_018713 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 184.25-46 chr4 29865951 29866359 + 0.75 NA Intergenic L1MB4|LINE|L1 651863 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 276-6 chr4 64827547 64828036 + 0.75 NA Intergenic Intergenic 176709 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 224.5-27 chr6 48077566 48078257 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -9222 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 323.25-2 chr2 237173520 237174053 + 0.75 NA Intergenic L1MB3|LINE|L1 87897 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 299.25-12 chr5 64335937 64336567 + 0.75 NA TTS (NM_001323292) TTS (NM_001323292) -169763 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 183.5-52 chr4 71304938 71305289 + 0.75 NA intron (NM_001098484, intron 3 of 25) MIR|SINE|MIR -33940 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 153-53 chr3 85542667 85542911 + 0.75 NA intron (NM_001256503, intron 2 of 9) L4_C_Mam|LINE|RTE-X 37730 NM_001256502 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 191.25-12 chr10 54078100 54078454 + 0.75 NA intron (NM_001354411, intron 18 of 34) intron (NM_001354411, intron 18 of 34) -407953 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 172.5-79 chr8 41924968 41925389 + 0.75 NA Intergenic L1ME3B|LINE|L1 -28437 NM_001142446 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 202-36 chr4 36933460 36933960 + 0.75 NA Intergenic L1PA7|LINE|L1 -68069 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 191.5-5 chr1 235225005 235225338 + 0.75 NA intron (NR_135074, intron 11 of 24) intron (NR_135074, intron 11 of 24) -35055 NR_039908 100616224 NR_039908 ENSG00000263439 MIR4753 mir-4753 microRNA 4753 ncRNA 153.25-89 chr5 18028133 18028501 + 0.75 NA Intergenic Intergenic 221043 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 200.5-45 chr4 52709060 52709387 + 0.75 NA Intergenic MER3|DNA|hAT-Charlie -3171 NR_145129 57291 Hs.744077 NR_024031 ENSG00000226950 DANCR AGU2|ANCR|KIAA0114|SNHG13|lncRNA-ANCR differentiation antagonizing non-protein coding RNA ncRNA 190.25-52 chr7 87818143 87818612 + 0.75 NA intron (NM_138290, intron 11 of 11) HAL1b|LINE|L1 57983 NM_018843 55972 Hs.208414 NM_018843 ENSG00000075303 SLC25A40 MCFP solute carrier family 25 member 40 protein-coding 266.75-11 chr22 26320895 26321466 + 0.75 NA intron (NM_001184776, intron 9 of 14) MIR|SINE|MIR -108080 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 210.5-36 chr5 72966538 72966987 + 0.75 NA intron (NM_001146032, intron 1 of 24) intron (NM_001146032, intron 1 of 24) 10721 NM_138782 115548 Hs.165762 NM_138782 ENSG00000157107 FCHO2 - FCH domain only 2 protein-coding 165-94 chr9 81514189 81514563 + 0.75 NA Intergenic Intergenic 175159 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 208.75-31 chr6 23743140 23743657 + 0.75 NA Intergenic Intergenic -382817 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 294.25-2 chr10 69352937 69353378 + 0.75 NA intron (NM_033496, intron 2 of 17) MER21C|LTR|ERVL 34310 NM_000188 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 243.75-20 chrX 94074118 94074690 + 0.75 NA Intergenic MamGypsy2-I|LTR|Gypsy 400198 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 179.5-6 chr10 25337038 25337356 + 0.75 NA intron (NM_020752, intron 2 of 10) L1ME3A|LINE|L1 -160921 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 275.75-5 chr13 78988832 78989370 + 0.75 NA Intergenic Intergenic -149051 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 287.5-20 chr8 135229461 135229923 + 0.75 NA Intergenic Intergenic -4439 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 160.75-91 chr5 129066273 129066591 + 0.75 NA Intergenic Charlie4z|DNA|hAT-Charlie -28317 NM_016048 51015 Hs.483296 NM_016048 ENSG00000066583 ISOC1 CGI-111 isochorismatase domain containing 1 protein-coding 276.75-4 chr17 16616214 16616797 + 0.75 NA Intergenic Intergenic 37345 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 189.75-54 chr4 45243276 45243688 + 0.75 NA Intergenic Intergenic -516848 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 190-13 chr14 48169653 48170097 + 0.75 NA Intergenic Intergenic -374861 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 173-43 chr20 41272382 41272662 + 0.75 NA intron (NM_015035, intron 1 of 3) L1MB5|LINE|L1 27598 NM_015035 23051 Hs.380133 NM_015035 ENSG00000174306 ZHX3 TIX1 zinc fingers and homeoboxes 3 protein-coding 166.25-15 chr11 31471128 31471642 + 0.75 NA intron (NM_001304274, intron 1 of 5) intron (NM_001304274, intron 1 of 5) 38237 NM_001304274 196294 Hs.502223 NM_144981 ENSG00000148950 IMMP1L IMMP1|IMP1|IMP1-LIKE inner mitochondrial membrane peptidase subunit 1 protein-coding 225.5 chr1 69601784 69602129 + 0.75 NA intron (NM_001366842, intron 1 of 7) intron (NM_001366842, intron 1 of 7) 32615 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 186 chr1 44883248 44883781 + 0.75 NA intron (NM_001166588, intron 6 of 9) LTR8A|LTR|ERV1 -40261 NM_003738 8643 Hs.591497 NM_003738 ENSG00000117425 PTCH2 PTC2 patched 2 protein-coding 311-2 chr10 83905554 83906397 + 0.75 NA Intergenic Intergenic -228886 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 220-3 chr12 42789336 42789815 + 0.75 NA Intergenic AluSz|SINE|Alu 97359 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 196-49 chr8 84360377 84360731 + 0.75 NA intron (NM_001354319, intron 2 of 8) L3b|LINE|CR1 -54930 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 154.75-62 chr3 33180446 33180871 + 0.75 NA intron (NM_015551, intron 3 of 4) AluSz|SINE|Alu 38152 NM_015551 26032 Hs.196647 NM_015551 ENSG00000173705 SUSD5 - sushi domain containing 5 protein-coding 178.25-47 chr4 119118841 119119287 + 0.75 NA Intergenic L1ME3E|LINE|L1 -16720 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1|FATZ-2 myozenin 2 protein-coding 163-55 chr3 44890409 44890788 + 0.75 NA intron (NM_003241, intron 3 of 13) intron (NM_003241, intron 3 of 13) 15990 NM_003241 7047 Hs.438265 NM_003241 ENSG00000163810 TGM4 TGP|hTGP transglutaminase 4 protein-coding 176.25-58 chr8 3382890 3383160 + 0.75 NA intron (NM_033225, intron 18 of 69) L1ME3A|LINE|L1 -654574 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 150.75-94 chr7 49440506 49440855 + 0.75 NA Intergenic L1ME2|LINE|L1 -332958 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 151-72 chr4 151141765 151142131 + 0.75 NA intron (NM_001009555, intron 13 of 20) intron (NM_001009555, intron 13 of 20) 33604 NM_001128924 152503 Hs.744983 NM_001009555 ENSG00000109686 SH3D19 EBP|EVE1|Eve-1|Kryn|SH3P19 SH3 domain containing 19 protein-coding 218.75-14 chr21 20050857 20051481 + 0.75 NA Intergenic L1MEf|LINE|L1 -151414 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 224-14 chr17 72949983 72950440 + 0.75 NA intron (NM_001352692, intron 4 of 9) intron (NM_001352692, intron 4 of 9) 142477 NM_139177 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 161-10 chr10 17129377 17129672 + 0.75 NA intron (NM_001081, intron 1 of 66) intron (NM_001081, intron 1 of 66) 293 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 270.5-20 chr8 85256274 85256817 + 0.75 NA intron (NM_198584, intron 2 of 6) intron (NM_198584, intron 2 of 6) 11087 NM_198584 377677 Hs.127189 NM_198584 ENSG00000185015 CA13 CAXIII carbonic anhydrase 13 protein-coding 217.5-4 chr1 248073926 248074270 + 0.75 NA intron (NM_001304535, intron 1 of 1) L1M5|LINE|L1 13416 NM_001004687 391192 Hs.690412 NM_001004687 ENSG00000198128 OR2L3 - olfactory receptor family 2 subfamily L member 3 protein-coding 286.5-19 chr8 77754000 77754666 + 0.75 NA Intergenic Intergenic 303636 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 253-7 chr2 61207783 61208198 + 0.75 NA intron (NM_014709, intron 70 of 79) intron (NM_014709, intron 70 of 79) 30572 NR_152212 130872 Hs.655602 NM_152392 ENSG00000173209 AHSA2P AHA1|AHSA2|Hch1 activator of HSP90 ATPase homolog 2, pseudogene pseudo 179.5-45 chr20 45410783 45411029 + 0.75 NA TTS (NM_018478) TTS (NM_018478) 2917 NM_001048225 55861 Hs.730643 NM_018478 ENSG00000244274 DBNDD2 C20orf35|CK1BP|HSMNP1 dysbindin domain containing 2 protein-coding 208.75-26 chr4 175239081 175239443 + 0.75 NA Intergenic Tigger3|DNA|TcMar-Tigger 320904 NM_001278127 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 185.75-84 chr8 85196378 85196770 + 0.75 NA intron (NM_001083589, intron 1 of 7) intron (NM_001083589, intron 1 of 7) 8909 NM_001083589 1875 Hs.445758 NM_001951 ENSG00000133740 E2F5 E2F-5 E2F transcription factor 5 protein-coding 210-60 chr9 70853073 70853549 + 0.75 NA intron (NM_001366143, intron 3 of 25) MER5A1|DNA|hAT-Charlie 15741 NM_206947 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 154-5 chr1 75148453 75148751 + 0.75 NA exon (NM_001256114, exon 7 of 9) exon (NM_001256114, exon 7 of 9) 14214 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 151-82 chr6 48577911 48578328 + 0.75 NA Intergenic Intergenic -509430 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 182.5-85 chrX 40658765 40659199 + 0.75 NA intron (NM_004229, intron 28 of 30) L1ME4b|LINE|L1 -11421 NM_001330455 159013 Hs.495961 NM_144970 ENSG00000185753 CXorf38 - chromosome X open reading frame 38 protein-coding 159 chr1 18233337 18233674 + 0.75 NA intron (NM_032880, intron 2 of 9) MIRb|SINE|MIR 125707 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 194.25-29 chr3 170067519 170067885 + 0.75 NA intron (NM_014373, intron 2 of 3) intron (NM_014373, intron 2 of 3) 29707 NM_014373 26996 Hs.231320 NM_014373 ENSG00000173890 GPR160 GPCR1|GPCR150 G protein-coupled receptor 160 protein-coding 157.5-78 chr5 88812325 88812582 + 0.75 NA intron (NM_001131005, intron 3 of 10) (TTATT)n|Simple_repeat|Simple_repeat 11474 NM_001193348 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 184.5-50 chr3 24549968 24550425 + 0.75 NA Intergenic L1M5|LINE|L1 -54488 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 245.25-2 chr10 31384695 31385410 + 0.75 NA intron (NM_001323638, intron 4 of 12) intron (NM_001323638, intron 4 of 12) 14703 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 219.5-16 chr2 98385830 98386287 + 0.75 NA intron (NM_001298, intron 5 of 7) MIR|SINE|MIR 39602 NM_001079878 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 249.25 chr1 115680177 115680720 + 0.75 NA intron (NM_001172411, intron 4 of 7) intron (NM_001172411, intron 4 of 7) 37819 NM_001172412 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 224.75-26 chr4 27828539 27828906 + 0.75 NA Intergenic Intergenic 611243 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 167.75-41 chr17 70036950 70037348 + 0.75 NA Intergenic (AAC)n|Simple_repeat|Simple_repeat -14122 NR_104130 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 212.5-55 chr8 98467656 98468032 + 0.75 NA intron (NM_006281, intron 10 of 10) intron (NM_006281, intron 10 of 10) 40886 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 193-47 chr5 159910621 159910994 + 0.75 NA Intergenic Intergenic -5675 NM_000679 147 Hs.368632 NM_000679 ENSG00000170214 ADRA1B ADRA1|ALPHA1BAR adrenoceptor alpha 1B protein-coding 280.5-12 chr8 51386709 51387368 + 0.75 NA intron (NM_144651, intron 17 of 22) intron (NM_144651, intron 17 of 22) 422407 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 184.5-25 chr12 50269100 50269478 + 0.75 NA intron (NM_016357, intron 1 of 10) MIR|SINE|MIR 14231 NM_016357 51474 Hs.525419 NM_016357 ENSG00000050405 LIMA1 EPLIN|LDLCQ8|SREBP3 LIM domain and actin binding 1 protein-coding 162.25-53 chr3 123138615 123139013 + 0.75 NA intron (NM_006810, intron 11 of 16) intron (NM_006810, intron 11 of 16) -22980 NR_106960 102465667 NR_106960 ENSG00000284421 MIR7110 hsa-mir-7110 microRNA 7110 ncRNA 195.75-45 chr3 99651602 99651970 + 0.75 NA intron (NM_020351, intron 1 of 3) intron (NM_020351, intron 1 of 3) 13192 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 157.25-105 chr8 113506902 113507175 + 0.75 NA Intergenic LTR54|LTR|ERV1 -70099 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 187.75-69 chr7 96697498 96697918 + 0.75 NA intron (NR_163953, intron 1 of 5) intron (NR_163953, intron 1 of 5) 12138 NM_001349702 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 157.25-22 chr14 67307926 67308283 + 0.75 NA intron (NM_001256550, intron 8 of 14) L1PA13|LINE|L1 51700 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 169-50 chr5 38709284 38709694 + 0.75 NA TTS (NR_104631) TTS (NR_104631) 10784 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 204.25-3 chr10 26062915 26063515 + 0.75 NA intron (NM_017433, intron 10 of 34) LTR33|LTR|ERVL 128986 NM_017433 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 357.25-2 chr2 99107732 99108636 + 0.75 NA intron (NR_146001, intron 6 of 18) L2c|LINE|L2 32996 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 210.5-19 chr2 19323443 19323865 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -24775 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 302.25-10 chr4 49149376 49149890 + 0.75 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 162991 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 202.75-8 chr10 123357724 123358192 + 0.75 NA Intergenic Intergenic 203556 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 170.25-16 chr14 45544689 45545053 + 0.75 NA Intergenic THE1D-int|LTR|ERVL-MaLR 170731 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 201.75-22 chr2 197042076 197042610 + 0.75 NA intron (NM_001367496, intron 16 of 27) intron (NM_001367496, intron 16 of 27) -115636 NM_001321100 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 212.75-21 chr3 125226620 125227030 + 0.75 NA 3' UTR (NM_021964, exon 9 of 9) 3' UTR (NM_021964, exon 9 of 9) -14060 NM_024628 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 248.5-23 chr6 169482360 169483088 + 0.75 NA intron (NR_146875, intron 19 of 20) L1PREC2|LINE|L1 219305 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 182.75-10 chr10 106534836 106535154 + 0.75 NA Intergenic Intergenic 394830 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 182.5-70 chr6 113307393 113307668 + 0.75 NA Intergenic Intergenic 125917 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 183.75-54 chr20 40016898 40017420 + 0.75 NA Intergenic Intergenic 12698 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 207.25-4 chr1 159435564 159435924 + 0.75 NA intron (NM_001363557, intron 4 of 4) intron (NM_001363557, intron 4 of 4) 3552 NR_145510 391121 NM_001348286 ENSG00000249730 OR10J4 OR10J4P|OST717 olfactory receptor family 10 subfamily J member 4 (gene/pseudogene) protein-coding 292-6 chr7 114500412 114500976 + 0.75 NA intron (NR_033767, intron 2 of 17) MIR3|SINE|MIR 74192 NM_148899 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 201.75-4 chr10 7353465 7353927 + 0.75 NA intron (NM_001029880, intron 4 of 20) Charlie2a|DNA|hAT-Charlie 55645 NM_001018039 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 162-56 chr4 78377322 78377686 + 0.75 NA intron (NM_001166133, intron 26 of 41) intron (NM_001166133, intron 26 of 41) 88519 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 240.75-2 chr1 182755765 182756193 + 0.75 NA Intergenic ORSL|DNA|hAT-Tip100 -33470 NM_030769 80896 Hs.496969 NM_030769 ENSG00000135838 NPL C112|C1orf13|NAL|NPL1 N-acetylneuraminate pyruvate lyase protein-coding 160.5-42 chr17 52379413 52379654 + 0.75 NA Intergenic LTR28B|LTR|ERV1 -10989 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 194.75-13 chr14 58292804 58293124 + 0.75 NA intron (NR_029435, intron 1 of 3) intron (NR_029435, intron 1 of 3) 4931 NR_146595 55451 NR_146595 ENSG00000279636 LINC00216 C14orf107|NCRNA00216|PRO1617 long intergenic non-protein coding RNA 216 ncRNA 272.75-12 chr2 206968067 206968526 + 0.75 NA exon (NM_173077, exon 8 of 9) exon (NM_173077, exon 8 of 9) 28778 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 208-4 chr10 6486391 6486920 + 0.75 NA intron (NM_001282644, intron 8 of 17) MER66B|LTR|ERV1 93621 NM_006257 5588 Hs.498570 NM_006257 ENSG00000065675 PRKCQ PRKCT|nPKC-theta protein kinase C theta protein-coding 180.25-35 chr2 125711086 125711400 + 0.75 NA Intergenic Intergenic 406742 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 168-3 chr1 69803707 69804040 + 0.75 NA intron (NM_001370785, intron 4 of 26) L1M5|LINE|L1 -115449 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 149.25-113 chr8 125109472 125109693 + 0.75 NA intron (NM_001349486, intron 3 of 7) intron (NM_001349486, intron 3 of 7) 17722 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 264.75-21 chr8 3803532 3804104 + 0.75 NA intron (NM_033225, intron 5 of 69) intron (NM_033225, intron 5 of 69) -1075367 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 184.25-49 chr4 48563787 48564155 + 0.75 NA exon (NM_015030, exon 31 of 64) exon (NM_015030, exon 31 of 64) 73719 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 176.75-67 chr4 187385374 187385750 + 0.75 NA intron (NR_038931, intron 1 of 4) L1MB8|LINE|L1 14914 NR_149103 105377602 Hs.582096 NR_149103 ENSG00000250042 LINC02514 - long intergenic non-protein coding RNA 2514 ncRNA 230.5-12 chr15 93933410 93933819 + 0.75 NA intron (NR_120320, intron 8 of 8) intron (NR_120320, intron 8 of 8) 32913 NR_120322 101927129 Hs.652658 NR_120322 ENSG00000258785 LINC01580 - long intergenic non-protein coding RNA 1580 ncRNA 231.25-8 chr11 78307723 78308078 + 0.75 NA intron (NM_080491, intron 1 of 9) MLT2B3|LTR|ERVL 33980 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 265-13 chr5 14368355 14369043 + 0.75 NA intron (NM_007118, intron 16 of 56) intron (NM_007118, intron 16 of 56) -95284 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 224.5-13 chr15 23477852 23478318 + 0.75 NA Intergenic Intergenic -30842 NM_001304388 283685 NM_182561 ENSG00000174450 GOLGA6L2 CT105 golgin A6 family like 2 protein-coding 439.75 chr2 41095705 41096950 + 0.75 NA Intergenic L1M5|LINE|L1 -583892 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 275-17 chr6 75195974 75196507 + 0.75 NA intron (NM_004370, intron 2 of 65) intron (NM_004370, intron 2 of 65) 9813 NM_004370 1303 Hs.101302 NM_004370 ENSG00000111799 COL12A1 BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|EDSMYP|UCMD2 collagen type XII alpha 1 chain protein-coding 236.25-9 chr11 98453802 98454341 + 0.75 NA Intergenic HUERS-P2-int|LTR|ERV1 -566878 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 290.5-18 chr8 119739613 119740449 + 0.75 NA intron (NM_003184, intron 25 of 25) intron (NM_003184, intron 25 of 25) -66641 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 150-19 chr11 78702418 78702766 + 0.75 NA intron (NM_001098816, intron 27 of 33) intron (NM_001098816, intron 27 of 33) -127728 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 183.5-75 chr8 120834234 120834615 + 0.75 NA Intergenic Intergenic -22378 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 260.75-11 chr14 76918751 76919163 + 0.75 NA Intergenic Intergenic -40681 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 153.75-29 chr19 4087643 4087931 + 0.75 NA Intergenic AluSx1|SINE|Alu -20888 NM_015898 51341 Hs.591384 NM_015898 ENSG00000178951 ZBTB7A FBI-1|FBI1|LRF|TIP21|ZBTB7|ZNF857A|pokemon zinc finger and BTB domain containing 7A protein-coding 165.25-22 chr2 16180852 16181156 + 0.75 NA Intergenic Intergenic 130577 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 210-35 chr21 34586215 34586524 + 0.75 NA intron (NM_004414, intron 1 of 3) L1ME3A|LINE|L1 27474 NM_001285389 1827 Hs.282326 NM_004414 ENSG00000159200 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 231.5-11 chr2 12544560 12544953 + 0.75 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) -172116 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 226-8 chr14 30580468 30580877 + 0.75 NA intron (NM_001308097, intron 1 of 13) MER20B|DNA|hAT-Charlie -3315 NR_151720 105370431 Hs.603980 NR_151720 ENSG00000257636 G2E3-AS1 CAT1647 G2E3 antisense RNA 1 ncRNA 167.5-58 chr3 109712285 109712587 + 0.75 NA Intergenic Intergenic 109608 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 163-12 chr10 94345050 94345355 + 0.75 NA intron (NM_022451, intron 11 of 20) L1ME3Cz|LINE|L1 17737 NM_022451 64318 Hs.74899 NM_022451 ENSG00000173145 NOC3L AD24|C10orf117|FAD24 NOC3 like DNA replication regulator protein-coding 347.5-10 chr5 64964840 64965440 + 0.75 NA intron (NM_005869, intron 11 of 13) intron (NM_005869, intron 11 of 13) 196210 NM_005869 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 189.25-17 chr15 61007764 61008105 + 0.75 NA intron (NM_134261, intron 1 of 10) Charlie2b|DNA|hAT-Charlie 221368 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 250.25-16 chr2 176040440 176041031 + 0.75 NA Intergenic Intergenic -37915 NR_130941 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 230.5-27 chr5 103443817 103444222 + 0.75 NA Intergenic Intergenic 97966 NR_104670 102467212 Hs.641885 NR_104670 ENSG00000248757 LINC02115 - long intergenic non-protein coding RNA 2115 ncRNA 185.5-75 chr9 10313877 10314248 + 0.75 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 298940 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 183-20 chr17 29811965 29812280 + 0.75 NA intron (NM_033389, intron 1 of 14) L2c|LINE|L2 -50690 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 205-5 chr10 51094625 51095119 + 0.75 NA intron (NM_006258, intron 1 of 17) intron (NM_006258, intron 1 of 17) 20385 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 208.75-18 chr2 134565448 134565912 + 0.75 NA intron (NM_030923, intron 2 of 7) L1ME3A|LINE|L1 153320 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 214.25-14 chr2 46267985 46268596 + 0.75 NA Intergenic Intergenic -29117 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 365.25-7 chr9 25772345 25773078 + 0.75 NA Intergenic Helitron1Nb_Mam|RC|Helitron -7345 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 148.75-82 chr5 169119900 169120294 + 0.75 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) 106870 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 190.25-9 chr12 17407081 17407521 + 0.75 NA Intergenic L1MD1|LINE|L1 181777 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 362.5-4 chr6 72951088 72952032 + 0.75 NA intron (NM_001160132, intron 1 of 13) AluSx1|SINE|Alu 16193 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 233-31 chr6 119734298 119734770 + 0.75 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) 184726 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 182.5-14 chr12 111976550 111976884 + 0.75 NA intron (NM_001294314, intron 5 of 12) L1MC2|LINE|L1 36448 NM_001193531 89894 Hs.506815 NM_138341 ENSG00000198270 TMEM116 - transmembrane protein 116 protein-coding 215.5-11 chr12 99667255 99667738 + 0.75 NA intron (NM_152788, intron 8 of 25) L1ME1|LINE|L1 19743 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 185.75-4 chr1 191565246 191565651 + 0.75 NA Intergenic MER20B|DNA|hAT-Charlie -336950 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 233.75-7 chr13 107665892 107666247 + 0.75 NA intron (NM_001080396, intron 1 of 2) HSMAR2|DNA|TcMar-Mariner -134821 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 168.25-7 chr10 31461157 31461438 + 0.75 NA intron (NM_001323678, intron 2 of 6) intron (NM_001323678, intron 2 of 6) -61542 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 166.5-96 chr9 82894533 82894813 + 0.75 NA Intergenic Intergenic 168469 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 214.75-30 chr3 36409998 36410332 + 0.75 NA intron (NM_001292049, intron 1 of 8) intron (NM_001292049, intron 1 of 8) 29678 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 386.5-4 chr6 34793747 34794403 + 0.75 NA intron (NM_017754, intron 1 of 20) AluSx|SINE|Alu 1992 NM_017754 54887 Hs.700656 NM_017754 ENSG00000065060 UHRF1BP1 C6orf107|ICBP90|dJ349A12.1 UHRF1 binding protein 1 protein-coding 215.75-37 chr8 71828327 71828753 + 0.75 NA Intergenic Intergenic -14583 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 228.75-20 chr3 175635607 175636112 + 0.75 NA intron (NM_207015, intron 11 of 13) intron (NM_207015, intron 11 of 13) 140474 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 258.5-23 chr8 57810821 57811583 + 0.75 NA Intergenic LTR16E1|LTR|ERVL 65053 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 180-10 chr11 89499552 89499935 + 0.75 NA intron (NM_001143837, intron 2 of 20) L2b|LINE|L2 -7524 NM_001300995 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 147-70 chr3 146431641 146431931 + 0.75 NA Intergenic L1MCc|LINE|L1 37515 NM_001199978 57047 Hs.744414 NM_020359 ENSG00000163746 PLSCR2 - phospholipid scramblase 2 protein-coding 213-9 chr12 97527979 97528380 + 0.75 NA intron (NR_024037, intron 7 of 8) L1ME4c|LINE|L1 -35633 NR_029678 406926 NR_029678 ENSG00000207586 MIR135A2 MIRN135-2|MIRN135A2|mir-135a-2 microRNA 135a-2 ncRNA 168.5-37 chr16 68432812 68433064 + 0.75 NA intron (NM_018667, intron 1 of 8) AluJb|SINE|Alu 15570 NM_018667 55512 Hs.368421 NM_018667 ENSG00000103056 SMPD3 NSMASE2 sphingomyelin phosphodiesterase 3 protein-coding 151-65 chr3 113478651 113478961 + 0.75 NA intron (NM_001331078, intron 7 of 17) L1MC4|LINE|L1 36038 NM_001331079 152185 Hs.477144 NM_144718 ENSG00000163611 SPICE1 CCDC52|SPICE spindle and centriole associated protein 1 protein-coding 175-31 chr4 12229620 12229994 + 0.75 NA intron (NR_125910, intron 1 of 3) intron (NR_125910, intron 1 of 3) 6356 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 174.25-6 chr10 27669234 27669583 + 0.75 NA Intergenic MIR|SINE|MIR -75207 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 188.25-46 chr5 73057171 73057673 + 0.75 NA intron (NM_001146032, intron 15 of 24) intron (NM_001146032, intron 15 of 24) -63153 NM_001161342 134285 Hs.162246 NM_173490 ENSG00000157111 TMEM171 PRP2 transmembrane protein 171 protein-coding 148.25-51 chr2 221914505 221914860 + 0.75 NA Intergenic Intergenic -340480 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 200.25-8 chr10 95132686 95133108 + 0.75 NA Intergenic HUERS-P3-int|LTR|ERV1 -61303 NM_207321 142827 Hs.134229 NM_207321 ENSG00000173124 ACSM6 C10orf129|bA310E22.3 acyl-CoA synthetase medium chain family member 6 protein-coding 322.5-3 chr11 88355693 88356193 + 0.75 NA Intergenic Intergenic -18207 NM_148170 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 238.5-2 chr1 86701626 86702040 + 0.75 NA intron (NR_135837, intron 1 of 4) L1ME3Cz|LINE|L1 2660 NR_135838 105378828 Hs.175285 NR_135837 ENSG00000261737 CLCA4-AS1 - CLCA4 antisense RNA 1 ncRNA 162.25-33 chr2 137978814 137979153 + 0.75 NA intron (NM_006895, intron 2 of 5) intron (NM_006895, intron 2 of 5) 14510 NM_006895 3176 Hs.42151 NM_006895 ENSG00000150540 HNMT HMT|HNMT-S1|HNMT-S2|MRT51 histamine N-methyltransferase protein-coding 172.5-57 chr4 83945426 83945875 + 0.75 NA Intergenic Intergenic 353519 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 212.25-36 chr5 154499913 154500443 + 0.75 NA Intergenic LTR78|LTR|ERV1 -21951 NM_004821 9421 Hs.152531 NM_004821 ENSG00000113196 HAND1 Hxt|Thing1|bHLHa27|eHand heart and neural crest derivatives expressed 1 protein-coding 214.75-22 chr17 61966631 61967077 + 0.75 NA intron (NM_005121, intron 18 of 29) intron (NM_005121, intron 18 of 29) -38872 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 151.5-44 chr19 18619168 18619439 + 0.75 NA intron (NM_012109, intron 7 of 7) intron (NM_012109, intron 7 of 7) 6433 NM_012109 25789 Hs.216226 NM_012109 ENSG00000105696 TMEM59L BSMAP|C19orf4 transmembrane protein 59 like protein-coding 155-45 chr2 157116985 157117407 + 0.75 NA Intergenic L1ME1|LINE|L1 -140509 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 301.25-10 chr5 118986287 118986935 + 0.75 NA intron (NM_173666, intron 1 of 5) intron (NM_173666, intron 1 of 5) 1609 NM_001308081 285605 Hs.655891 NM_173666 ENSG00000169570 DTWD2 - DTW domain containing 2 protein-coding 268.5-8 chr14 68337425 68337852 + 0.75 NA intron (NM_133509, intron 8 of 10) MER5B|DNA|hAT-Charlie 291149 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 197.75-6 chr1 162360111 162360491 + 0.75 NA intron (NM_014697, intron 8 of 9) intron (NM_014697, intron 8 of 9) -2682 NM_001126060 9722 Hs.731942 NM_014697 ENSG00000198929 NOS1AP 6330408P19Rik|CAPON nitric oxide synthase 1 adaptor protein protein-coding 208.5-65 chrX 49702215 49702600 + 0.75 NA Intergenic Intergenic -6423 NM_003785 8712 Hs.128231 NM_003785 ENSG00000068985 PAGE1 AL5|CT16.3|GAGE-9|GAGEB1|PAGE-1 PAGE family member 1 protein-coding 208.5-9 chr11 90812527 90812851 + 0.75 NA intron (NR_104190, intron 4 of 6) MLT2C1|LTR|ERVL 56513 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 234.5-20 chr4 69772935 69773339 + 0.75 NA Intergenic MER41-int|LTR|ERV1 -12517 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 202-19 chr2 32121945 32122535 + 0.75 NA intron (NM_001363875, intron 6 of 15) HAL1|LINE|L1 -43601 NM_001193514 55676 Hs.23248 NM_017964 ENSG00000152683 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 member 6 protein-coding 222.25-38 chr5 150807803 150808367 + 0.75 NA Intergenic Intergenic 30139 NM_032947 85027 Hs.29444 NM_032947 ENSG00000256235 SMIM3 C5orf62|MST150|NID67 small integral membrane protein 3 protein-coding 147-46 chr2 58614787 58615258 + 0.75 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 94269 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 238.25-6 chr11 80430488 80431087 + 0.75 NA Intergenic Intergenic 332016 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 248.25-17 chr7 8227462 8227845 + 0.75 NA exon (NM_001350837, exon 5 of 15) exon (NM_001350837, exon 5 of 15) 34399 NM_001350825 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 158-70 chr5 97698214 97698622 + 0.75 NA Intergenic Tigger4b|DNA|TcMar-Tigger -142340 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 158.5-69 chr3 123609002 123609229 + 0.75 NA TTS (NM_053028) TTS (NM_053028) 11433 NM_053032 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 156.5-56 chr2 184528075 184528574 + 0.75 NA Intergenic MER52-int|LTR|ERV1 -70205 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 273-4 chr14 41789770 41790294 + 0.75 NA intron (NM_001330106, intron 2 of 4) L1M5|LINE|L1 183176 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 155.5-100 chr7 90237053 90237515 + 0.75 NA 3' UTR (NM_001040666, exon 7 of 7) 3' UTR (NM_001040666, exon 7 of 7) -7890 NM_001363438 79846 Hs.521014 NM_024788 ENSG00000105792 CFAP69 C7orf63|FAP69|SPGF24 cilia and flagella associated protein 69 protein-coding 209-39 chr6 5305857 5306344 + 0.75 NA intron (NM_006567, intron 1 of 6) Eulor9A|DNA|DNA 44587 NM_006567 10667 Hs.484547 NM_006567 ENSG00000145982 FARS2 COXPD14|FARS1|HSPC320|PheRS|SPG77|mtPheRS phenylalanyl-tRNA synthetase 2, mitochondrial protein-coding 206.5-7 chr10 121066876 121067361 + 0.75 NA Intergenic L1MB7|LINE|L1 215756 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 166.75-52 chr3 84307064 84307502 + 0.75 NA Intergenic Intergenic 562292 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 211.25-20 chr2 54366853 54367251 + 0.75 NA Intergenic MIR|SINE|MIR 36168 NM_001100396 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 170.25-25 chr17 32309398 32309639 + 0.75 NA intron (NM_001363836, intron 7 of 8) AluSp|SINE|Alu 32655 NM_022344 64149 Hs.655257 NM_022344 ENSG00000108666 C17orf75 NJMU-R1|SRI2 chromosome 17 open reading frame 75 protein-coding 161.5-53 chr20 37132313 37132558 + 0.75 NA intron (NM_152503, intron 13 of 24) AluJb|SINE|Alu -36438 NM_001323282 5933 Hs.207745 NM_002895 ENSG00000080839 RBL1 CP107|PRB1|p107 RB transcriptional corepressor like 1 protein-coding 206.75-3 chr1 158833389 158833807 + 0.75 NA intron (NM_002432, intron 1 of 6) L1MB2|LINE|L1 2247 NM_002432 4332 Hs.153837 NM_002432 ENSG00000163563 MNDA PYHIN3 myeloid cell nuclear differentiation antigen protein-coding 150.75-24 chr14 87987470 87987804 + 0.75 NA intron (NM_000153, intron 3 of 16) intron (NM_000153, intron 3 of 16) 5545 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 182.25-4 chr1 248231323 248231681 + 0.75 NA Intergenic Intergenic -7427 NM_017504 26245 Hs.381309 NM_017504 ENSG00000171180 OR2M4 HSHTPCRX18|HTPCRX18|OR1-55|OST710|TPCR100 olfactory receptor family 2 subfamily M member 4 protein-coding 182-39 chr4 62362466 62362805 + 0.75 NA Intergenic Intergenic -200870 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 254-13 chr8 64754054 64754675 + 0.75 NA intron (NM_004820, intron 1 of 5) MamRep1151|LTR?|LTR? 44373 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 357.25-3 chr7 157968285 157969245 + 0.75 NA intron (NM_130843, intron 10 of 21) intron (NM_130843, intron 10 of 21) 114180 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 186.75-2 chr1 81780550 81780819 + 0.75 NA intron (NM_001366008, intron 4 of 26) MIRc|SINE|MIR -19692 NM_001366005 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 268.5-18 chr3 187146671 187147510 + 0.75 NA Intergenic Intergenic -7594 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L L39-2|RPL39L1 ribosomal protein L39 like protein-coding 167-52 chr3 41668526 41668814 + 0.75 NA intron (NR_136342, intron 27 of 34) intron (NR_136342, intron 27 of 34) 293433 NM_001322501 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 202.75-31 chr4 58796070 58796383 + 0.75 NA Intergenic L1M7|LINE|L1 -188056 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 297-4 chr20 37552917 37553470 + 0.75 NA Intergenic L1M2|LINE|L1 -25262 NM_001167820 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 254-10 chr5 86841792 86842335 + 0.75 NA Intergenic Intergenic 95245 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 176 chr1 29988893 29989254 + 0.75 NA Intergenic L1ME1|LINE|L1 48539 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 243.5-13 chr19 40132263 40132733 + 0.75 NA Intergenic Intergenic -41555 NM_001142579 284323 Hs.115140 NM_001010880 ENSG00000197782 ZNF780A ZNF780 zinc finger protein 780A protein-coding 147-21 chr11 134035551 134035952 + 0.75 NA intron (NR_027276, intron 1 of 2) intron (NR_027276, intron 1 of 2) 3479 NR_027276 100128239 Hs.423734 NR_027276 ENSG00000204241 LINC02731 - long intergenic non-protein coding RNA 2731 ncRNA 177.25-51 chr4 97567457 97567833 + 0.75 NA intron (NM_174952, intron 10 of 10) L1MC4a|LINE|L1 200719 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 200.25-3 chr1 80452410 80452808 + 0.75 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -83146 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 189-32 chr2 153903393 153903718 + 0.75 NA intron (NM_052917, intron 2 of 12) MIR|SINE|MIR 31633 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 229.75-18 chr21 24193331 24193867 + 0.75 NA Intergenic Intergenic 127778 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 197.75-61 chr6 64409493 64409879 + 0.75 NA intron (NM_001292009, intron 28 of 43) intron (NM_001292009, intron 28 of 43) 602850 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 155-60 chr3 118341856 118342224 + 0.75 NA Intergenic Intergenic -299728 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 255.75-3 chr10 51586565 51587192 + 0.75 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 112717 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 171.25-7 chr10 43158172 43158430 + 0.75 NA intron (NM_018590, intron 2 of 7) L2c|LINE|L2 3404 NM_001319654 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 325.75-8 chrX 42099574 42100288 + 0.75 NA Intergenic MER45B|DNA|hAT-Tip100 -176377 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 316.75-7 chr4 63769129 63769873 + 0.75 NA Intergenic Intergenic 639949 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 239.5-12 chr13 45702069 45702790 + 0.75 NA promoter-TSS (NM_001286342) promoter-TSS (NM_001286342) -40 NM_001286342 220082 Hs.186363 NM_152719 ENSG00000174015 SPERT CBY2|NURIT spermatid associated protein-coding 185-5 chr1 194350293 194350703 + 0.75 NA Intergenic L1MEg|LINE|L1 1045753 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 150-26 chr14 43252273 43252546 + 0.75 NA Intergenic Intergenic 1254874 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 168.25-24 chr15 93533780 93534181 + 0.75 NA Intergenic L1M5|LINE|L1 -322580 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 186.5-49 chr4 64447846 64448242 + 0.75 NA Intergenic Intergenic -38584 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 150.75-19 chr12 45402041 45402320 + 0.75 NA intron (NM_001025356, intron 13 of 19) intron (NM_001025356, intron 13 of 19) 109490 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 148-95 chr9 126361477 126361873 + 0.75 NA intron (NM_033446, intron 2 of 9) L1ME1|LINE|L1 34846 NM_033446 89853 Hs.162659 NM_033446 ENSG00000196814 MVB12B C9orf28|FAM125B multivesicular body subunit 12B protein-coding 221.25-17 chr2 57169599 57170061 + 0.75 NA Intergenic Intergenic -737821 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 231-20 chr5 94972168 94972682 + 0.75 NA intron (NM_001297777, intron 2 of 19) MLT1J|LTR|ERVL-MaLR 109441 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 222.25-31 chr4 105728379 105728763 + 0.75 NA intron (NM_001370181, intron 4 of 11) intron (NM_001370181, intron 4 of 11) 17758 NM_001031720 79807 Hs.161429 NM_024751 ENSG00000138780 GSTCD - glutathione S-transferase C-terminal domain containing protein-coding 166-10 chr10 92990343 92990672 + 0.75 NA intron (NM_001319195, intron 18 of 21) intron (NM_001319195, intron 18 of 21) -70291 NM_183374 340665 Hs.369993 NM_183374 ENSG00000187553 CYP26C1 FFDD4 cytochrome P450 family 26 subfamily C member 1 protein-coding 171.5-101 chr8 131791837 131792158 + 0.75 NA Intergenic Intergenic -112096 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 239.75-6 chr10 81921751 81922301 + 0.75 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 44339 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 162.5-8 chr1 108993755 108994028 + 0.75 NA intron (NM_014969, intron 8 of 14) HAL1|LINE|L1 -30392 NM_001048210 23155 Hs.658489 NM_015127 ENSG00000121940 CLCC1 MCLC chloride channel CLIC like 1 protein-coding 238-20 chr7 118358768 118359308 + 0.75 NA Intergenic Intergenic 134334 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 218-32 chr9 92591998 92592547 + 0.75 NA intron (NM_001286969, intron 4 of 6) L1ME3A|LINE|L1 -7985 NM_001286971 401541 Hs.713775 NM_001012267 ENSG00000188312 CENPP CENP-P centromere protein P protein-coding 161-14 chr11 22863090 22863411 + 0.75 NA Intergenic Intergenic -2776 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 158.75-52 chr3 109177656 109178046 + 0.75 NA promoter-TSS (NR_026767) promoter-TSS (NR_026767) -314 NR_026767 677779 Hs.618669 NM_001040054 ENSG00000214381 LINC00488 C3orf66 long intergenic non-protein coding RNA 488 ncRNA 181.25-43 chr4 19947017 19947324 + 0.75 NA Intergenic Intergenic -304735 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 196-18 chr14 77624195 77624523 + 0.75 NA Intergenic Intergenic -7592 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 237.25-15 chr4 53480133 53480508 + 0.75 NA intron (NM_001126328, intron 7 of 10) intron (NM_001126328, intron 7 of 10) -19757 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 209-11 chr12 16716928 16717372 + 0.75 NA Intergenic Intergenic -108936 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 148-80 chr6 55915462 55915762 + 0.75 NA Intergenic Intergenic -40022 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 171.5-49 chr2 116041763 116042155 + 0.75 NA Intergenic Intergenic 698144 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 167.5-75 chr5 80413754 80414106 + 0.75 NA intron (NR_146172, intron 2 of 20) HAL1|LINE|L1 5866 NR_146174 9765 Hs.482660 NM_014733 ENSG00000039319 ZFYVE16 PPP1R69 zinc finger FYVE-type containing 16 protein-coding 179.5-12 chr11 65772274 65772697 + 0.75 NA Intergenic MER53|DNA|hAT 8491 NM_138368 91056 Hs.591957 NM_138368 ENSG00000254470 AP5B1 AP-5|PP1030 adaptor related protein complex 5 subunit beta 1 protein-coding 165.75-117 chrX 87693526 87693837 + 0.75 NA Intergenic Intergenic 175879 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 183.25 chr1 21773408 21773933 + 0.75 NA intron (NM_001350167, intron 1 of 26) L1MC5a|LINE|L1 9479 NM_001350168 84196 Hs.467524 NM_032236 ENSG00000090686 USP48 RAP1GA1|USP31 ubiquitin specific peptidase 48 protein-coding 185.25-67 chr5 86110837 86111371 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR -171340 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 307.25-2 chr1 66563487 66564211 + 0.75 NA intron (NM_001350218, intron 1 of 22) intron (NM_001350218, intron 1 of 22) 29696 NM_001350218 84251 Hs.132121 NM_032291 ENSG00000118473 SGIP1 - SH3 domain GRB2 like endophilin interacting protein 1 protein-coding 302.25-7 chr2 139495789 139496506 + 0.75 NA Intergenic MER1A|DNA|hAT-Charlie 598823 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 169-30 chr19 41944435 41944790 + 0.75 NA Intergenic Intergenic 14709 NM_006423 10567 Hs.11417 NM_006423 ENSG00000105404 RABAC1 PRA1|PRAF1|YIP3 Rab acceptor 1 protein-coding 187.75-80 chrX 152273138 152273562 + 0.75 NA intron (NM_000808, intron 4 of 9) L1MA4|LINE|L1 118949 NR_029521 406897 NR_029521 ENSG00000207957 MIR105-1 MIRN105-1|mir-105-1 microRNA 105-1 ncRNA 148.5-33 chr17 55006471 55006721 + 0.75 NA intron (NM_178509, intron 7 of 17) intron (NM_178509, intron 7 of 17) -37811 NM_001321518 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 158.5-49 chr2 162188871 162189249 + 0.75 NA intron (NM_004460, intron 19 of 25) intron (NM_004460, intron 19 of 25) -36813 NM_002054 2641 Hs.516494 NM_002054 ENSG00000115263 GCG GLP-1|GLP1|GLP2|GRPP glucagon protein-coding 215.5-5 chr10 12939756 12940153 + 0.75 NA intron (NM_001282658, intron 6 of 6) intron (NM_001282658, intron 6 of 6) 61759 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 167.25-47 chr3 63610221 63610560 + 0.75 NA intron (NM_001130003, intron 5 of 5) intron (NM_001130003, intron 5 of 5) -42285 NM_001348756 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 256.75-19 chr4 90133023 90133463 + 0.75 NA intron (NM_001145065, intron 1 of 10) intron (NM_001145065, intron 1 of 10) 5710 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 337-4 chr6 137521731 137522560 + 0.75 NA Intergenic Intergenic -27751 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 279-6 chr2 5344509 5344976 + 0.75 NA Intergenic Intergenic 346376 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 193-2 chr1 89266960 89267282 + 0.75 NA exon (NM_052942, exon 6 of 12) exon (NM_052942, exon 6 of 12) 5739 NM_052942 115362 Hs.513726 NM_052942 ENSG00000154451 GBP5 GBP-5 guanylate binding protein 5 protein-coding 232-28 chr8 138867667 138868036 + 0.75 NA intron (NM_152888, intron 3 of 64) AluSc5|SINE|Alu 46190 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 174.5-14 chr10 90227155 90227424 + 0.75 NA Intergenic Intergenic -269916 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 148.25-44 chr2 53318914 53319308 + 0.75 NA Intergenic Intergenic -448672 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 224.25-32 chr7 5763773 5764174 + 0.75 NA intron (NM_207111, intron 1 of 16) AluSq2|SINE|Alu 17690 NM_207116 54476 Hs.487458 NM_019011 ENSG00000011275 RNF216 CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN ring finger protein 216 protein-coding 167.75-4 chr1 95312903 95313383 + 0.75 NA intron (NR_135588, intron 1 of 1) intron (NR_135588, intron 1 of 1) 5120 NR_135588 100996630 Hs.662270 NR_135588 ENSG00000228504 LINC01760 - long intergenic non-protein coding RNA 1760 ncRNA 234 chr10 36360834 36361362 + 0.75 NA Intergenic Intergenic 582796 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 258.25-5 chr12 19995034 19995574 + 0.75 NA Intergenic Intergenic -19381 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 178.25-75 chr9 36885694 36886054 + 0.75 NA intron (NR_103999, intron 6 of 8) Charlie18a|DNA|hAT-Charlie 7657 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 249.5-11 chr2 54498268 54498847 + 0.75 NA intron (NM_003128, intron 1 of 35) MIR|SINE|MIR -30665 NR_002229 56969 Hs.657366 NM_020217 RPL23AP32 RPL23A_9_220 ribosomal protein L23a pseudogene 32 pseudo 230.5-38 chrX 85581397 85581795 + 0.75 NA Intergenic MSTB-int|LTR|ERVL-MaLR -201931 NM_001307940 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 152.75-54 chr2 154084340 154084578 + 0.75 NA intron (NM_052917, intron 3 of 12) intron (NM_052917, intron 3 of 12) 140065 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 170.25-39 chr20 17459498 17459919 + 0.75 NA intron (NM_002594, intron 10 of 11) MER5A|DNA|hAT-Charlie 71671 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 155.75-75 chr4 31963713 31964011 + 0.75 NA Intergenic Intergenic -33517 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 185.5-54 chr5 12403169 12403523 + 0.75 NA Intergenic AluSz|SINE|Alu -171511 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 151-98 chr8 73438983 73439254 + 0.75 NA intron (NR_038406, intron 2 of 2) MER63A|DNA|hAT-Blackjack 19044 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 168.5-75 chr4 104173310 104173601 + 0.75 NA Intergenic L1PREC2|LINE|L1 -317510 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 214.5-22 chr2 76816440 76816887 + 0.75 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -169302 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 203.5-41 chr3 76358156 76358595 + 0.75 NA Intergenic Intergenic -572826 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 275-7 chr2 14315595 14316081 + 0.75 NA intron (NR_103814, intron 2 of 3) intron (NR_103814, intron 2 of 3) 85120 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 161.75-76 chr5 35645532 35645839 + 0.75 NA intron (NM_144722, intron 4 of 9) intron (NM_144722, intron 4 of 9) 27822 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 163.25-52 chr4 33282741 33282976 + 0.75 NA Intergenic MLT1B|LTR|ERVL-MaLR 757035 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 161.75-80 chr5 151783015 151783265 + 0.75 NA intron (NM_198395, intron 1 of 11) AluSx3|SINE|Alu -10964 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 199.25-6 chr11 12026114 12026466 + 0.75 NA Intergenic MER21C|LTR|ERVL -4585 NR_135109 105376554 Hs.523483 NR_135109 ENSG00000254486 LINC02547 - long intergenic non-protein coding RNA 2547 ncRNA 164-61 chr5 15238990 15239277 + 0.75 NA intron (NR_109944, intron 2 of 2) LTR79|LTR|ERVL 27427 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 212.5-9 chr12 64534929 64535252 + 0.75 NA Intergenic MER104|DNA|TcMar-Tc2 -75405 NM_178169 283349 Hs.643605 NM_178169 ENSG00000153179 RASSF3 RASSF5 Ras association domain family member 3 protein-coding 212.75-18 chr2 240802323 240802778 + 0.75 NA intron (NM_004321, intron 1 of 46) L1MEg|LINE|L1 17669 NM_001330289 547 Hs.516802 NM_004321 ENSG00000130294 KIF1A ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104 kinesin family member 1A protein-coding 261.25-18 chr8 118955727 118956201 + 0.75 NA intron (NM_001324095, intron 1 of 7) MLT1A0|LTR|ERVL-MaLR 3701 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 152-34 chr2 32550462 32550803 + 0.75 NA intron (NM_016252, intron 65 of 73) intron (NM_016252, intron 65 of 73) 18479 NR_030285 693143 NR_030285 ENSG00000207653 MIR558 MIRN558|hsa-mir-558 microRNA 558 ncRNA 271.25-2 chr10 86776383 86776912 + 0.75 NA intron (NM_004329, intron 1 of 12) L2|LINE|L2 20008 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 238.25-22 chr3 131638475 131638955 + 0.75 NA intron (NM_130808, intron 7 of 15) L1PB1|LINE|L1 -135744 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 171-51 chr5 25483924 25484324 + 0.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 293171 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 212-42 chr8 138347274 138347601 + 0.75 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 149824 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 160.5-21 chr11 81271106 81271323 + 0.75 NA Intergenic MIRc|SINE|MIR -508411 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 220.75 chr1 59522840 59523324 + 0.75 NA intron (NM_001278224, intron 1 of 9) intron (NM_001278224, intron 1 of 9) 7452 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 153-64 chr4 67541164 67541536 + 0.75 NA intron (NR_155754, intron 2 of 18) intron (NR_155754, intron 2 of 18) 4153 NM_001812 1060 Hs.479867 NM_001812 ENSG00000145241 CENPC CENP-C|CENPC1|MIF2|hcp-4 centromere protein C protein-coding 321.75 chr2 136512210 136512659 + 0.75 NA Intergenic L1MA8|LINE|L1 -253111 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 204.25-6 chr12 20272203 20272679 + 0.75 NA Intergenic Intergenic -96804 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 153.75-81 chr7 81755888 81756203 + 0.75 NA intron (NM_001010934, intron 4 of 4) MamSINE1|SINE|tRNA-RTE 14002 NM_001010931 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 179.25-29 chr14 26810617 26811121 + 0.75 NA intron (NR_110557, intron 1 of 4) intron (NR_110557, intron 1 of 4) 1521 NR_110557 102724890 Hs.569381 NR_110556 ENSG00000257185 LINC02293 - long intergenic non-protein coding RNA 2293 ncRNA 158.5-13 chr11 98035529 98035749 + 0.75 NA Intergenic L1PB1|LINE|L1 -985310 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 217-15 chr20 21470150 21470705 + 0.75 NA Intergenic Penelope1_Vert|LINE|Penelope 43637 NM_002509 4821 Hs.516922 NM_002509 ENSG00000125820 NKX2-2 NKX2.2|NKX2B NK2 homeobox 2 protein-coding 155.5-7 chr10 24117786 24118051 + 0.75 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -90873 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 219-26 chr8 83988434 83988859 + 0.75 NA Intergenic Intergenic -194141 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 181.25-23 chr19 50885250 50885699 + 0.75 NA intron (NR_002948, intron 4 of 4) intron (NR_002948, intron 4 of 4) 10924 NR_002948 606293 Hs.643424 NR_002948 ENSG00000197588 KLKP1 KARMA|KLK31P|KRSP1|PsiKLK1|YKLK1 kallikrein pseudogene 1 pseudo 262-4 chr2 114864668 114865069 + 0.75 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -31320 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 185.5-34 chr2 13185438 13185751 + 0.75 NA Intergenic Intergenic -178581 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 152.75-56 chr2 197550058 197550296 + 0.75 NA intron (NM_199482, intron 6 of 7) MIR3|SINE|MIR 33879 NM_001204094 25843 Hs.633165 NM_015387 ENSG00000115540 MOB4 2C4D|CGI-95|MOB1|MOB3|MOBKL3|PHOCN|PREI3 MOB family member 4, phocein protein-coding 236-10 chr14 36347452 36347883 + 0.75 NA Intergenic Intergenic -26991 NM_001144891 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 249.75-22 chr9 85564561 85564902 + 0.75 NA intron (NM_015239, intron 25 of 25) Tigger3a|DNA|TcMar-Tigger 177298 NM_015239 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 297.25-5 chr4 65959989 65960424 + 0.75 NA Intergenic Intergenic -289711 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 161.25-49 chr3 147551156 147551563 + 0.75 NA Intergenic L1MEd|LINE|L1 130032 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 171.5-13 chr10 35498343 35498819 + 0.75 NA intron (NM_181698, intron 4 of 11) MLT1O|LTR|ERVL-MaLR -106760 NM_153368 219770 Hs.638922 NM_153368 ENSG00000177291 GJD4 CX40.1 gap junction protein delta 4 protein-coding 229.75-19 chr3 24871864 24872392 + 0.75 NA intron (NM_001290216, intron 2 of 10) L2a|LINE|L2 42805 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 227.25-25 chr5 83357959 83358550 + 0.75 NA Intergenic Intergenic -113420 NM_001164097 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 164-31 chr2 19336541 19336943 + 0.75 NA Intergenic Intergenic -11687 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 218-2 chr1 75086308 75086858 + 0.75 NA Intergenic Intergenic -41851 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 198.75 chr1 38363572 38363936 + 0.75 NA Intergenic MLT1F2|LTR|ERVL-MaLR -111442 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 279.75-19 chr8 108623994 108624889 + 0.75 NA intron (NR_136411, intron 2 of 3) intron (NR_136411, intron 2 of 3) 163153 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 173.25-64 chr5 117741811 117742184 + 0.75 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 11636 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 178.75-51 chr4 161471160 161471693 + 0.75 NA intron (NM_001128428, intron 12 of 14) L1MB3|LINE|L1 -551307 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 207.5-28 chr3 22388406 22388969 + 0.75 NA Intergenic MIR|SINE|MIR 431548 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 182.5-61 chr5 123047935 123048478 + 0.75 NA Intergenic L1MA4|LINE|L1 -11481 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 228-4 chr10 19674173 19674697 + 0.75 NA intron (NM_001142308, intron 36 of 39) intron (NM_001142308, intron 36 of 39) 54115 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 264.75-9 chr3 135685605 135685995 + 0.75 NA Intergenic Intergenic -279928 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 225-28 chr8 102965631 102966139 + 0.75 NA intron (NR_126339, intron 2 of 2) intron (NR_126339, intron 2 of 2) -55198 NM_001695 528 Hs.86905 NM_001695 ENSG00000155097 ATP6V1C1 ATP6C|ATP6D|VATC|Vma5 ATPase H+ transporting V1 subunit C1 protein-coding 149.5-17 chr12 62116049 62116275 + 0.75 NA intron (NM_178539, intron 1 of 4) Helitron3Na_Mam|RC|Helitron 76677 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 169-34 chr2 39260680 39261041 + 0.75 NA intron (NM_003618, intron 28 of 33) intron (NM_003618, intron 28 of 33) -16877 NR_144521 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 156.5-27 chr12 20427814 20428186 + 0.75 NA intron (NM_000921, intron 1 of 15) AluYg6|SINE|Alu 58755 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 263.25-13 chr3 112532320 112532854 + 0.75 NA TTS (NM_022488) TTS (NM_022488) -28733 NM_001348906 55032 Hs.237480 NM_017945 ENSG00000138459 SLC35A5 - solute carrier family 35 member A5 protein-coding 259.25-6 chr2 212738842 212739451 + 0.75 NA Intergenic Intergenic -56185 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 195.75-46 chr3 108339181 108339540 + 0.75 NA intron (NM_001370244, intron 2 of 9) MIRb|SINE|MIR 27575 NM_001282557 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 160.75-59 chr2 45451554 45451883 + 0.75 NA intron (NM_018079, intron 16 of 20) intron (NM_018079, intron 16 of 20) 159549 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 219.25-4 chr10 53141083 53141591 + 0.75 NA Intergenic Intergenic -369637 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 222.75-35 chr7 81606796 81607167 + 0.75 NA intron (NR_126025, intron 4 of 10) intron (NR_126025, intron 4 of 10) 19235 NR_126026 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 220.25-17 chr18 6325545 6325928 + 0.75 NA intron (NM_001365765, intron 1 of 18) L1ME3F|LINE|L1 33294 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 145.75-18 chr11 73669465 73669697 + 0.75 NA Intergenic AluY|SINE|Alu 20668 NM_001130036 58473 Hs.445489 NM_021200 ENSG00000021300 PLEKHB1 KPL1|PHR1|PHRET1 pleckstrin homology domain containing B1 protein-coding 169.25-43 chr4 100624694 100625014 + 0.75 NA Intergenic Intergenic 50259 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 192-29 chr2 59472510 59472867 + 0.75 NA Intergenic L1ME1|LINE|L1 254980 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 149.25-47 chr2 146199949 146200245 + 0.75 NA Intergenic HAL1ME|LINE|L1 -386960 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 284-12 chr9 80078406 80078998 + 0.75 NA Intergenic MER58A|DNA|hAT-Charlie 103679 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 186.25-62 chr8 75042856 75043166 + 0.75 NA Intergenic A-rich|Low_complexity|Low_complexity 42856 NM_001286777 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 157.75-51 chr2 140701921 140702317 + 0.75 NA intron (NM_018557, intron 39 of 90) intron (NM_018557, intron 39 of 90) -115434 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 154.75-53 chr2 236357077 236357331 + 0.75 NA intron (NR_073043, intron 15 of 19) (AT)n|Simple_repeat|Simple_repeat -92859 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 174.75-59 chr7 54589822 54590168 + 0.75 NA Intergenic (AC)n|Simple_repeat|Simple_repeat 33025 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 240.5-10 chr14 70372487 70373030 + 0.75 NA 3' UTR (NM_018373, exon 4 of 4) 3' UTR (NM_018373, exon 4 of 4) -13075 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 167.25-24 chr15 33316208 33316508 + 0.75 NA intron (NM_001243996, intron 1 of 102) intron (NM_001243996, intron 1 of 102) 5391 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 156-75 chr5 86957811 86958163 + 0.75 NA Intergenic Intergenic 156967 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 252.5-16 chr3 23253438 23253953 + 0.75 NA intron (NM_001370225, intron 3 of 5) L1ME4c|LINE|L1 50368 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 167.75-35 chr15 73232634 73233139 + 0.75 NA intron (NM_002499, intron 7 of 28) L1M4a2|LINE|L1 -67024 NR_162148 113219462 NR_162148 MIR12135 - microRNA 12135 ncRNA 168.75-76 chr4 92655113 92655574 + 0.75 NA intron (NM_001286838, intron 2 of 14) L1M2|LINE|L1 350944 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 189-52 chr6 50913189 50913595 + 0.75 NA Intergenic Intergenic 94521 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 205.25-42 chr9 104158996 104159312 + 0.75 NA Intergenic Intergenic 64527 NM_001042550 10592 Hs.119023 NM_006444 ENSG00000136824 SMC2 CAP-E|CAPE|SMC-2|SMC2L1 structural maintenance of chromosomes 2 protein-coding 192.75-47 chr4 97051034 97051476 + 0.75 NA Intergenic LTR16E1|LTR|ERVL -315671 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 188.25-11 chr12 14262350 14262718 + 0.75 NA Intergenic AluSx3|SINE|Alu -103098 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 206.5-13 chr13 22395976 22396267 + 0.75 NA Intergenic Intergenic 185836 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 157-67 chr4 54078021 54078334 + 0.75 NA Intergenic Intergenic -13572 NM_012110 26511 Hs.335393 NM_012110 ENSG00000109220 CHIC2 BTL cysteine rich hydrophobic domain 2 protein-coding 155.75-40 chr16 4808936 4809328 + 0.75 NA intron (NM_001324098, intron 14 of 14) L1MEf|LINE|L1 -6182 NM_024589 79641 Hs.459795 NM_024589 ENSG00000067836 ROGDI KTZS rogdi atypical leucine zipper protein-coding 225.5-12 chr13 69037347 69037667 + 0.75 NA Intergenic Intergenic -152182 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 232-9 chr11 83486882 83487495 + 0.75 NA intron (NM_001142699, intron 21 of 27) intron (NM_001142699, intron 21 of 27) 195237 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 228.5-41 chr5 79639712 79640114 + 0.75 NA intron (NM_001349553, intron 6 of 16) L2|LINE|L2 27472 NM_001349554 167153 Hs.418198 NM_173797 ENSG00000164329 TENT2 APD4|GLD2|PAPD4|TUT2 terminal nucleotidyltransferase 2 protein-coding 221.75-31 chr5 153955688 153956045 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR -56879 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 192.75-24 chr17 74018200 74018584 + 0.75 NA Intergenic Intergenic -185286 NM_000999 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 272.5-16 chr7 127472356 127472732 + 0.75 NA Intergenic AluSx1|SINE|Alu -4339 NR_110024 100506682 Hs.148450 NR_110024 ENSG00000226770 LOC100506682 - uncharacterized LOC100506682 ncRNA 204.25-51 chr8 24495898 24496416 + 0.75 NA intron (NM_003817, intron 16 of 21) THE1B-int|LTR|ERVL-MaLR 18711 NR_125809 101929315 Hs.125562 NR_125809 ENSG00000253643 LOC101929315 - uncharacterized LOC101929315 ncRNA 203.75-41 chr6 56364847 56365379 + 0.75 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 29015 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 234-7 chr2 49797950 49798440 + 0.75 NA Intergenic L2|LINE|L2 176008 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 269.75-13 chr6 138678342 138679129 + 0.75 NA Intergenic MIR|SINE|MIR -12933 NR_033896 441172 Hs.92290 NR_033896 FLJ46906 - uncharacterized LOC441172 ncRNA 221.75-29 chr5 4452057 4452531 + 0.75 NA Intergenic L1ME1|LINE|L1 -321187 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 164.25-3 chr1 81816048 81816374 + 0.75 NA intron (NM_001366002, intron 2 of 20) intron (NM_001366002, intron 2 of 20) 13758 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 146-11 chr10 64274008 64274406 + 0.75 NA Intergenic Intergenic -551321 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 207.75-18 chr18 3754910 3755328 + 0.75 NA intron (NM_001242762, intron 2 of 9) L1M4a2|LINE|L1 90239 NM_001003809 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 192.25-39 chr2 213816812 213817232 + 0.75 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) 58955 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 221.5-48 chr7 109514743 109515098 + 0.75 NA Intergenic L1MC3|LINE|L1 445293 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 201.75-42 chr8 135949133 135949594 + 0.75 NA Intergenic MER47A|DNA|TcMar-Tigger 491907 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 255.25-24 chr7 97004368 97004823 + 0.75 NA promoter-TSS (NM_005222) promoter-TSS (NM_005222) -958 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 220.75-8 chr14 63241474 63242009 + 0.75 NA intron (NM_020663, intron 1 of 4) intron (NM_020663, intron 1 of 4) 37298 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 170.75-75 chrX 95301605 95302071 + 0.75 NA Intergenic L1PA13|LINE|L1 -238612 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 176.75-35 chr2 48907682 48907932 + 0.75 NA Intergenic Intergenic -151796 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 245.75-19 chr9 111539841 111540315 + 0.75 NA intron (NM_001007169, intron 5 of 5) AluJr|SINE|Alu 14899 NM_001007169 158399 Hs.584864 NM_133464 ENSG00000173258 ZNF483 ZKSCAN16|ZSCAN48 zinc finger protein 483 protein-coding 149.75-106 chr8 142550439 142550767 + 0.75 NA Intergenic Intergenic 63876 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1|hArc activity regulated cytoskeleton associated protein protein-coding 154.5-66 chr3 194325308 194325559 + 0.75 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -12629 NR_024480 100131551 Hs.128066 NR_024480 ENSG00000214145 LINC00887 HEIRCC long intergenic non-protein coding RNA 887 ncRNA 347 chr2 157021357 157022218 + 0.75 NA Intergenic MLT2B1|LTR|ERVL -235918 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 181-21 chr2 50741783 50742066 + 0.75 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -45662 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 147-27 chr14 54603213 54603680 + 0.75 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 35834 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 229.75-17 chr20 10098926 10099477 + 0.75 NA intron (NR_040710, intron 3 of 4) L1MD1|LINE|L1 64214 NM_022096 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 239.25-4 chr10 36259450 36259948 + 0.75 NA Intergenic L1PREC2|LINE|L1 481397 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 166.5-94 chr9 28645666 28646034 + 0.75 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 73455 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 212.25-28 chr4 57863737 57864280 + 0.75 NA Intergenic Intergenic 438136 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 176.75-31 chr2 17531232 17531680 + 0.75 NA Intergenic Intergenic -1042 NM_001321233 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 324.75-4 chr22 33592199 33592774 + 0.75 NA intron (NM_133642, intron 5 of 14) intron (NM_133642, intron 5 of 14) 112434 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 178.75-42 chr3 117485535 117485995 + 0.75 NA Intergenic Intergenic 205160 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 232.25-14 chr14 50251923 50252343 + 0.75 NA intron (NM_024884, intron 9 of 9) L1MA2|LINE|L1 -20555 NM_006939 6655 Hs.291533 NM_006939 ENSG00000100485 SOS2 NS9|SOS-2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 210.25-29 chr4 34386318 34386857 + 0.75 NA Intergenic Intergenic -116840 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 167.25-5 chr1 215884130 215884467 + 0.75 NA intron (NM_206933, intron 41 of 71) intron (NM_206933, intron 41 of 71) -188167 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 230.25 chr1 34970163 34970493 + 0.75 NA Intergenic L1MEg2|LINE|L1 8378 NR_037869 653160 Hs.533986 NR_037869 ENSG00000241014 LOC653160 - uncharacterized LOC653160 ncRNA 225.5-32 chr3 175925991 175926668 + 0.75 NA Intergenic L1MA6|LINE|L1 -149996 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 311.75-3 chr12 75022576 75023192 + 0.75 NA Intergenic Intergenic 186864 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 232.75-5 chr12 110734138 110734878 + 0.75 NA intron (NM_002710, intron 1 of 6) AluSp|SINE|Alu 8383 NM_001244974 5501 Hs.79081 NM_002710 ENSG00000186298 PPP1CC PP-1G|PP1C|PPP1G protein phosphatase 1 catalytic subunit gamma protein-coding 159.5-73 chr5 26303233 26303584 + 0.75 NA Intergenic MLT2C2|LTR|ERVL 735178 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 165-95 chr9 97740562 97740883 + 0.75 NA intron (NR_147055, intron 5 of 10) intron (NR_147055, intron 5 of 10) -43313 NM_000380 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC XPA, DNA damage recognition and repair factor protein-coding 229.25-7 chr11 94109990 94110423 + 0.75 NA intron (NM_001098672, intron 17 of 19) L1ME1|LINE|L1 -18635 NM_015368 24145 Hs.591976 NM_015368 ENSG00000110218 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 211.5-28 chr2 72770169 72770660 + 0.75 NA intron (NR_135774, intron 1 of 19) MER46C|DNA|TcMar-Tigger 55619 NM_001321730 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 231-25 chr6 55669544 55669956 + 0.75 NA Intergenic L1MEf|LINE|L1 -90536 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 340-4 chr8 130436998 130437726 + 0.75 NA intron (NM_001362925, intron 1 of 29) intron (NM_001362925, intron 1 of 29) 6298 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 147.25-88 chr6 105037882 105038256 + 0.75 NA intron (NM_001004317, intron 3 of 3) intron (NM_001004317, intron 3 of 3) 80962 NM_001004317 389421 Hs.23616 NM_001004317 ENSG00000187772 LIN28B CSDD2 lin-28 homolog B protein-coding 254.75-4 chr1 198867186 198867751 + 0.75 NA intron (NR_040073, intron 2 of 2) intron (NR_040073, intron 2 of 2) -8315 NR_029626 406995 NR_029626 ENSG00000207759 MIR181A1 MIR213|MIRN181A1|MIRN213|hsa-mir-181a-1|mir-181a-1|mir-213 microRNA 181a-1 ncRNA 148.25-78 chr6 67967569 67967887 + 0.75 NA Intergenic Intergenic -87623 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 273.25-10 chr17 60996197 60996894 + 0.75 NA intron (NM_001330413, intron 15 of 25) L2a|LINE|L2 318694 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 256.5-6 chr18 33618413 33618932 + 0.75 NA intron (NM_030632, intron 2 of 11) L2c|LINE|L2 40453 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 244.25-29 chrX 86264111 86264775 + 0.75 NA intron (NM_001139515, intron 1 of 11) intron (NM_001139515, intron 1 of 11) 1475 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 171.5-60 chr3 83005011 83005283 + 0.75 NA Intergenic Intergenic 1019005 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 163.75-24 chr16 72833170 72833607 + 0.75 NA intron (NM_001164766, intron 3 of 8) intron (NM_001164766, intron 3 of 8) -168418 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 201.25 chr1 82316353 82316801 + 0.75 NA Intergenic Intergenic 514124 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 149.5-34 chr17 68387232 68387496 + 0.75 NA intron (NM_001352899, intron 9 of 12) AluJr|SINE|Alu -26259 NM_001278433 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 272.25-2 chr10 22756599 22757112 + 0.75 NA Intergenic Intergenic -42277 NM_005028 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 355.25-4 chr3 46969739 46970749 + 0.75 NA intron (NM_144716, intron 2 of 7) MER30|DNA|hAT-Charlie 6257 NR_102269 151903 Hs.631918 NM_144716 ENSG00000160799 CCDC12 - coiled-coil domain containing 12 protein-coding 198-5 chr10 102434628 102435041 + 0.75 NA Intergenic Intergenic -1678 NR_030169 574447 NR_030169 ENSG00000202569 MIR146B MIRN146B|miRNA146B|mir-146b microRNA 146b ncRNA 170.25-61 chr6 52720161 52720521 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR 24818 NR_033760 730152 Hs.739662 NR_033760 GSTA7P GSTAP2|GSTAP6 glutathione S-transferase alpha 7, pseudogene pseudo 237-3 chr17 48349272 48349851 + 0.75 NA intron (NM_001075099, intron 3 of 12) intron (NM_001075099, intron 3 of 12) 55214 NR_131239 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 151.75-78 chr5 83046077 83046308 + 0.75 NA Intergenic Intergenic 18145 NR_003139 677765 Hs.693283 NR_003139 ENSG00000238835 SCARNA18 SCARNA18A|U109 small Cajal body-specific RNA 18 ncRNA 185.25-57 chr3 190914734 190915159 + 0.75 NA Intergenic L1ME1|LINE|L1 37016 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 180.5-19 chr14 79025360 79025703 + 0.75 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -174451 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 205.25-10 chr12 97238501 97239132 + 0.75 NA Intergenic Intergenic -223960 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 185.75-55 chr4 63925990 63926390 + 0.75 NA Intergenic Intergenic 483260 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 176.5-73 chr6 64961301 64961651 + 0.75 NA intron (NM_001292009, intron 14 of 43) (AT)n|Simple_repeat|Simple_repeat -339942 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 209-48 chr9 28728090 28728796 + 0.75 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) -9138 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 150.75-4 chr1 171570855 171571262 + 0.75 NA intron (NM_015172, intron 23 of 33) intron (NM_015172, intron 23 of 33) -48705 NM_001368164 110806290 NM_001368164 MYOCOS - myocilin opposite strand protein-coding 178.25-39 chr3 90340482 90340912 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 1233076 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 232.25-21 chr2 208482775 208483290 + 0.75 NA intron (NM_005048, intron 10 of 12) MER11D|LTR|ERVK -59610 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 172.5-51 chr3 155626860 155627172 + 0.75 NA intron (NM_001349252, intron 2 of 24) L1ME3G|LINE|L1 49327 NM_001130961 23007 Hs.567423 NM_014996 ENSG00000114805 PLCH1 PLCL3 phospholipase C eta 1 protein-coding 229.75-23 chr4 100042896 100043272 + 0.75 NA Intergenic Arthur1|DNA|hAT-Tip100 92590 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 183.75-37 chr18 55272094 55272563 + 0.75 NA intron (NM_001348216, intron 3 of 12) intron (NM_001348216, intron 3 of 12) 30332 NM_001348216 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 285.25 chr1 194319557 194320003 + 0.75 NA Intergenic OldhAT1|DNA|hAT-Ac 1015035 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 184.25-10 chr10 85883799 85884291 + 0.75 NA intron (NM_017551, intron 5 of 15) intron (NM_017551, intron 5 of 15) 306314 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 170.75-12 chr12 63213959 63214189 + 0.75 NA Intergenic Intergenic -61264 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 151.75-70 chr4 93209209 93209590 + 0.75 NA intron (NM_001286838, intron 4 of 14) L1PA13|LINE|L1 -619354 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 162-15 chr11 84392286 84392708 + 0.75 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -75158 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 238.25-5 chr10 90389166 90389657 + 0.75 NA Intergenic Intergenic 151394 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 216-13 chr12 30251667 30252193 + 0.75 NA Intergenic Intergenic 425314 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 149-15 chr12 59375729 59376020 + 0.75 NA Intergenic L2b|LINE|L2 -220155 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 154.5-34 chr15 80360136 80360605 + 0.75 NA Intergenic Intergenic -18565 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 177.75-79 chr9 110162208 110162468 + 0.75 NA intron (NM_007203, intron 10 of 10) (TGCTG)n|Simple_repeat|Simple_repeat 36837 NM_001136562 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 170.5-2 chr1 73577699 73578066 + 0.75 NA Intergenic L1PA12|LINE|L1 -96797 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 215.75-17 chr2 56025227 56025671 + 0.75 NA intron (NR_126406, intron 1 of 2) intron (NR_126406, intron 1 of 2) 21877 NR_126406 104355290 Hs.580331 NR_126406 MIR217HG MIR216AHG|MIR216BHG MIR217 host gene ncRNA 272.75-15 chr22 20328192 20328715 + 0.75 NA Intergenic AluYa5|SINE|Alu -8393 NM_033257 85359 Hs.410965 NM_033257 ENSG00000128185 DGCR6L DGCR6 DiGeorge syndrome critical region gene 6 like protein-coding 301-3 chr14 65718237 65718894 + 0.75 NA intron (NR_038167, intron 7 of 8) L1M1|LINE|L1 247463 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 179.25-64 chr5 129597289 129597577 + 0.75 NA intron (NM_133638, intron 8 of 22) MIR|SINE|MIR -136744 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 287.75-9 chr3 28028913 28029599 + 0.75 NA Intergenic MER20|DNA|hAT-Charlie -195120 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 197.5-33 chr2 119918990 119919444 + 0.75 NA intron (NM_002830, intron 11 of 26) L1ME3|LINE|L1 -93860 NR_135920 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 165.75-84 chr5 164334785 164335285 + 0.75 NA Intergenic Intergenic 132367 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 188.75-32 chr2 125180403 125180787 + 0.75 NA Intergenic Intergenic 937390 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 187.25-36 chr2 106554840 106555192 + 0.75 NA Intergenic MIRb|SINE|MIR 67652 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 305.5-7 chr22 21746755 21747321 + 0.75 NA Intergenic Intergenic -11244 NR_130910 29799 Hs.517436 NM_013313 ENSG00000100027 YPEL1 FKSG3 yippee like 1 protein-coding 207-4 chr10 94260461 94260756 + 0.75 NA intron (NM_001165979, intron 12 of 31) intron (NM_001165979, intron 12 of 31) 26462 NR_033969 100128054 Hs.677562 NR_033969 ENSG00000268894 PLCE1-AS1 - PLCE1 antisense RNA 1 ncRNA 283.5-13 chr4 111472715 111473317 + 0.75 NA Intergenic Intergenic -612369 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 203.5-74 chr9 85620902 85621425 + 0.75 NA intron (NM_015239, intron 15 of 25) intron (NM_015239, intron 15 of 25) 120866 NM_015239 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 153.5-80 chr5 38684692 38685018 + 0.75 NA Intergenic Intergenic 35418 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 146.75-99 chr6 92169130 92169465 + 0.75 NA Intergenic Intergenic -478869 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 191.75-14 chr11 36378786 36379264 + 0.75 NA intron (NM_024841, intron 2 of 9) intron (NM_024841, intron 2 of 9) 3040 NM_024841 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 208.75-27 chr5 29623205 29623495 + 0.75 NA Intergenic LOR1b|LTR|ERV1 -227374 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 161.5-31 chr13 109481248 109481725 + 0.75 NA Intergenic Intergenic 80790 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 191-19 chr12 18885316 18885940 + 0.75 NA Intergenic Intergenic 147509 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 262.75-8 chr16 10436311 10436787 + 0.75 NA intron (NM_001256160, intron 5 of 11) intron (NM_001256160, intron 5 of 11) 50488 NM_001352120 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 222.5-26 chr2 198598410 198598987 + 0.75 NA Intergenic Intergenic -223601 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 247.25-11 chr2 79627462 79628021 + 0.75 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 21618 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 213.25-40 chr5 158410366 158410740 + 0.75 NA promoter-TSS (NR_109888) promoter-TSS (NR_109888) -780 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 167-42 chr2 76064563 76064910 + 0.75 NA Intergenic Intergenic -353821 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 181-52 chr8 118115137 118115622 + 0.75 NA Intergenic L1MA9|LINE|L1 -3560 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 202.25-32 chr2 124427690 124428174 + 0.75 NA intron (NM_130773, intron 4 of 23) MER5A|DNA|hAT-Charlie 402645 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 331.75-3 chr22 27925466 27926034 + 0.75 NA TTS (NR_026962) TTS (NR_026962) -5138 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 249.25-14 chr4 105940909 105941450 + 0.75 NA intron (NM_001184692, intron 7 of 10) AluJr|SINE|Alu 45708 NM_001184690 255743 Hs.518921 NM_198278 ENSG00000168743 NPNT EGFL6L|POEM nephronectin protein-coding 226.25 chr1 69276735 69277100 + 0.75 NA Intergenic Intergenic -156338 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 199.25-44 chr3 163539701 163540235 + 0.75 NA Intergenic Intergenic -236667 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 228.5-38 chr4 18541463 18542126 + 0.75 NA Intergenic Intergenic -519919 NM_001365659 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 212.25-12 chr13 46905545 46905932 + 0.75 NA Intergenic L3|LINE|CR1 -8662 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 247.5-27 chr4 96819307 96819904 + 0.75 NA Intergenic Arthur1B|DNA|hAT-Tip100 508902 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 185 chr1 21808802 21809406 + 0.75 NA Intergenic AluJr4|SINE|Alu -3161 NM_001013693 401944 Hs.745158 NM_001013693 ENSG00000187942 LDLRAD2 - low density lipoprotein receptor class A domain containing 2 protein-coding 161-74 chr6 78596103 78596468 + 0.75 NA Intergenic Intergenic -56976 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 193.5-76 chr8 122262864 122263344 + 0.75 NA Intergenic Intergenic 305540 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 195.75-63 chr5 161224205 161224497 + 0.75 NA Intergenic L1P4|LINE|L1 -285725 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 152-17 chr12 71571326 71571531 + 0.75 NA intron (NR_110596, intron 12 of 19) intron (NR_110596, intron 12 of 19) 92420 NM_144982 196441 Hs.245798 NM_144982 ENSG00000133858 ZFC3H1 CCDC131|CSRC2|PSRC2 zinc finger C3H1-type containing protein-coding 188.75-37 chr22 48424585 48424929 + 0.75 NA Intergenic Intergenic -64796 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 151.75-21 chr12 15777007 15777247 + 0.75 NA intron (NM_004447, intron 1 of 20) intron (NM_004447, intron 1 of 20) 12261 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 155-46 chr2 222687954 222688257 + 0.75 NA intron (NM_058165, intron 1 of 5) MIR|SINE|MIR 16447 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 247-24 chr7 70048453 70048864 + 0.75 NA intron (NM_015570, intron 2 of 18) intron (NM_015570, intron 2 of 18) 450183 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 233.5-28 chr6 54312983 54313522 + 0.75 NA intron (NM_014464, intron 1 of 10) intron (NM_014464, intron 1 of 10) 4811 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 245.75-17 chr7 48304091 48304540 + 0.75 NA intron (NM_152701, intron 23 of 61) intron (NM_152701, intron 23 of 61) 132857 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 188.25-49 chr5 117669643 117670028 + 0.75 NA Intergenic Intergenic -60526 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 147.5-85 chr6 10269668 10269921 + 0.75 NA Intergenic Intergenic -134708 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 165.25-26 chr2 168653260 168653653 + 0.75 NA intron (NM_001256126, intron 4 of 10) intron (NM_001256126, intron 4 of 10) 70513 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 191-24 chr14 51022982 51023282 + 0.75 NA intron (NM_015163, intron 2 of 9) intron (NM_015163, intron 2 of 9) 72572 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 159.5-2 chr1 37886513 37887056 + 0.75 NA intron (NR_158630, intron 12 of 24) intron (NR_158630, intron 12 of 24) -27192 NM_005955 4520 Hs.471991 NM_005955 ENSG00000188786 MTF1 MTF-1|ZRF metal regulatory transcription factor 1 protein-coding 167.75-7 chr1 238300739 238301009 + 0.75 NA Intergenic Intergenic 185143 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 147-9 chr10 22105709 22106039 + 0.75 NA Intergenic Intergenic -102144 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 157.25-11 chr11 21811519 21811791 + 0.75 NA Intergenic HERVL18-int|LTR|ERVL -381430 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 253.25-15 chr3 96834346 96835064 + 0.75 NA intron (NM_001080448, intron 1 of 17) intron (NM_001080448, intron 1 of 17) 20111 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 166-51 chr3 171214209 171214487 + 0.75 NA intron (NM_001161563, intron 3 of 31) intron (NM_001161563, intron 3 of 31) -107589 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 183.25-50 chr4 52764290 52764698 + 0.75 NA Intergenic LTR67B|LTR|ERVL -12854 NM_024534 100288413 Hs.363087 NM_024534 ENSG00000226887 ERVMER34-1 HEMO|envMER34 endogenous retrovirus group MER34 member 1, envelope protein-coding 242.5-5 chr1 238999444 239000079 + 0.75 NA Intergenic L1ME3E|LINE|L1 -386807 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 148.5-23 chr13 28588801 28589017 + 0.75 NA Intergenic AluSp|SINE|Alu -70221 NM_015932 51371 Hs.268742 NM_015932 ENSG00000132963 POMP C13orf12|HSPC014|PNAS-110|PRAAS2|UMP1 proteasome maturation protein protein-coding 159.25-37 chr2 129608129 129608563 + 0.75 NA Intergenic L1PA16|LINE|L1 269145 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 282-6 chr17 65761023 65761495 + 0.75 NA intron (NM_001353129, intron 21 of 26) L1MCa|LINE|L1 65192 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 146.5-79 chr4 100284652 100284974 + 0.75 NA Intergenic Intergenic -94345 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 179.25-70 chr7 89054231 89054586 + 0.75 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -258671 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 164.75-20 chr14 47993471 47993831 + 0.75 NA Intergenic L1M4|LINE|L1 -198637 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 296.25-10 chr4 96848896 96849615 + 0.75 NA Intergenic Intergenic -517671 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 176-42 chr22 37000218 37000613 + 0.75 NA intron (NM_178552, intron 3 of 5) MIR3|SINE|MIR 7436 NM_178552 339669 Hs.124502 NM_178552 ENSG00000185264 TEX33 C22orf33|EAN57|cE81G9.2 testis expressed 33 protein-coding 193.75-5 chr1 233878521 233878904 + 0.75 NA Intergenic Intergenic -25964 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 164-29 chr2 12798427 12798671 + 0.75 NA Intergenic Intergenic 61182 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 151-111 chr9 134216450 134216895 + 0.75 NA Intergenic Intergenic -52108 NR_023344 100151684 Hs.545589 NR_023344 ENSG00000221676 RNU6ATAC RNU6ATAC1|U6ATAC RNA, U6atac small nuclear (U12-dependent splicing) snRNA 199.25-60 chr6 154626848 154627286 + 0.75 NA Intergenic AluSz|SINE|Alu -106311 NM_014892 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 170-8 chr10 74745753 74746278 + 0.75 NA Intergenic MIRb|SINE|MIR -79240 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 182.75-38 chr2 198752337 198752805 + 0.75 NA Intergenic Intergenic -377474 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 192.25-55 chr6 9360802 9361275 + 0.75 NA Intergenic Intergenic 708829 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 212-27 chr4 65709051 65709556 + 0.75 NA Intergenic Intergenic -38808 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 347.75 chr1 191421952 191422607 + 0.75 NA Intergenic Intergenic -193781 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 189.5-10 chr10 84052733 84053128 + 0.75 NA Intergenic MIR|SINE|MIR -86579 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 305.5-3 chr15 61924947 61925665 + 0.75 NA intron (NM_001018088, intron 53 of 81) intron (NM_001018088, intron 53 of 81) 135141 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 167.25 chr1 78372970 78373362 + 0.75 NA Intergenic Intergenic -117808 NM_001039585 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 153.5-65 chr3 118680305 118680642 + 0.75 NA intron (NR_135547, intron 1 of 3) L1PA8A|LINE|L1 38705 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 192.25-19 chr13 91145706 91146136 + 0.75 NA intron (NR_047004, intron 2 of 3) intron (NR_047004, intron 2 of 3) -56304 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 155.5-97 chr7 18639492 18639808 + 0.75 NA intron (NM_058176, intron 7 of 22) intron (NM_058176, intron 7 of 22) 130380 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 207.75 chr1 68073422 68073860 + 0.75 NA intron (NR_040077, intron 3 of 9) L1PA14|LINE|L1 -22010 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 195.75-8 chr10 58810437 58810893 + 0.75 NA intron (NM_001080512, intron 17 of 20) intron (NM_001080512, intron 17 of 20) 95650 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 165.5-90 chr7 69621867 69622262 + 0.75 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 23589 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 189.25-46 chr6 77885119 77885536 + 0.75 NA intron (NM_001282136, intron 4 of 4) AluJb|SINE|Alu 232288 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 277.75-9 chr3 4606740 4607383 + 0.75 NA intron (NM_001168272, intron 4 of 60) intron (NM_001168272, intron 4 of 60) 113713 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 209.75-17 chr15 83244369 83244931 + 0.75 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -36827 NM_016073 50810 Hs.513954 NM_016073 ENSG00000166503 HDGFL3 CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3 HDGF like 3 protein-coding 227-18 chr8 105085129 105085697 + 0.75 NA Intergenic L1MC5|LINE|L1 -233025 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 165-81 chr7 79092588 79093017 + 0.75 NA intron (NM_001301128, intron 1 of 20) Tigger20a|DNA|TcMar-Tigger 83814 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 201.75-39 chr8 83812965 83813496 + 0.75 NA Intergenic AluY|SINE|Alu -369557 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 217.5-29 chr4 87356324 87356737 + 0.75 NA intron (NM_016245, intron 5 of 6) HAL1b|LINE|L1 -33648 NM_178135 345275 Hs.284414 NM_178135 ENSG00000170509 HSD17B13 HMFN0376|NIIL497|SCDR9|SDR16C3 hydroxysteroid 17-beta dehydrogenase 13 protein-coding 227.25-3 chr10 74831943 74832377 + 0.75 NA intron (NM_001370142, intron 1 of 16) Charlie4z|DNA|hAT-Charlie 5560 NM_001370144 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 196-46 chr7 90303894 90304403 + 0.75 NA intron (NM_001039706, intron 18 of 22) intron (NM_001039706, intron 18 of 22) -31075 NR_110085 101927446 Hs.734999 NR_110085 ENSG00000105793 LOC101927446 - uncharacterized LOC101927446 ncRNA 166.75-22 chr13 38158010 38158305 + 0.75 NA Intergenic L1PA17|LINE|L1 -14925 NR_047500 100874188 Hs.569249 NR_047500 ENSG00000223685 LINC00571 - long intergenic non-protein coding RNA 571 ncRNA 204-9 chr12 12207960 12208376 + 0.75 NA intron (NM_002336, intron 2 of 22).2 L1ME2|LINE|L1 58876 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 175.75-44 chr3 27912337 27912717 + 0.75 NA Intergenic Intergenic -78391 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 281-13 chr8 120226600 120227191 + 0.75 NA intron (NM_021110, intron 16 of 47) intron (NM_021110, intron 16 of 47) 101793 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 192-22 chr16 60284382 60284821 + 0.75 NA Intergenic Intergenic 75192 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 168.5-22 chr13 49514957 49515380 + 0.75 NA intron (NM_001040444, intron 3 of 9) intron (NM_001040444, intron 3 of 9) 18112 NM_001040444 51131 Hs.369039 NM_001040443 ENSG00000136147 PHF11 APY|BCAP|IGEL|IGER|IGHER|NY-REN-34|NYREN34 PHD finger protein 11 protein-coding 172.5-36 chr2 132940316 132940617 + 0.75 NA intron (NM_207481, intron 8 of 17) intron (NM_207481, intron 8 of 17) 24909 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 304.25-13 chr8 89916094 89916663 + 0.75 NA intron (NM_001126111, intron 4 of 5) intron (NM_001126111, intron 4 of 5) 13808 NM_001126111 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 194.5-46 chr5 24633242 24633723 + 0.75 NA intron (NM_001362460, intron 1 of 9) intron (NM_001362460, intron 1 of 9) 11496 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 196.75-15 chr14 48618440 48618857 + 0.75 NA Intergenic Intergenic -823634 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 230-15 chr2 80765825 80766356 + 0.75 NA Intergenic L1ME2|LINE|L1 452711 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 335.25 chr10 8869610 8870141 + 0.75 NA Intergenic SVA_D|Retroposon|SVA -28114 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 194.25-13 chr16 79607747 79608232 + 0.75 NA Intergenic L3|LINE|CR1 -7252 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 164.5-74 chr5 128690422 128690870 + 0.75 NA Intergenic L1ME3B|LINE|L1 -152401 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 210-3 chr1 220584388 220584790 + 0.75 NA intron (NM_018650, intron 3 of 17) Charlie25|DNA|hAT-Charlie 56406 NM_001286126 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 240-19 chr3 139063229 139063909 + 0.75 NA Intergenic L1ME1|LINE|L1 -18677 NM_001134657 389152 Hs.531377 NM_001004315 ENSG00000233701 PRR23C - proline rich 23C protein-coding 161.25-18 chr12 87373154 87373510 + 0.75 NA Intergenic L1MA9|LINE|L1 42593 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 161.25-19 chr13 25248016 25248340 + 0.75 NA 3' UTR (NM_004685, exon 14 of 14) 3' UTR (NM_004685, exon 14 of 14) 39310 NM_004685 9107 Hs.643702 NM_004685 ENSG00000139505 MTMR6 - myotubularin related protein 6 protein-coding 223.5-26 chr22 19382963 19383403 + 0.75 NA intron (NM_003325, intron 13 of 24) L1ME4a|LINE|L1 48550 NM_003325 7290 Hs.474206 NM_003325 ENSG00000100084 HIRA DGCR1|TUP1|TUPLE1 histone cell cycle regulator protein-coding 232.75-2 chr1 84648844 84649254 + 0.75 NA intron (NM_001166417, intron 14 of 14) L2a|LINE|L2 -14029 NR_027379 439927 Hs.407054 NM_001033660 ENSG00000180869 LINC01555 C1orf180 long intergenic non-protein coding RNA 1555 ncRNA 244-8 chr15 23916977 23917572 + 0.75 NA Intergenic L1M5|LINE|L1 -57873 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 261.5-12 chr2 189782695 189783175 + 0.75 NA intron (NR_163942, intron 1 of 4) intron (NR_163942, intron 1 of 4) 1058 NM_001371388 148.75-12 chr10 59021908 59022351 + 0.75 NA Intergenic Intergenic 22611 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 190-21 chr19 35477203 35477531 + 0.75 NA Intergenic AluSg|SINE|Alu 13097 NM_207392 388533 Hs.112457 NM_207392 ENSG00000188508 KRTDAP KDAP|UNQ467 keratinocyte differentiation associated protein protein-coding 214.75-50 chr8 91615484 91616115 + 0.75 NA Intergenic Intergenic 366480 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 191.5-59 chr8 113106428 113106802 + 0.75 NA intron (NM_001363185, intron 4 of 66) L1MEc|LINE|L1 270537 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 193.75-16 chr12 3431351 3431886 + 0.75 NA intron (NM_001256536, intron 1 of 9) L2a|LINE|L2 50269 NM_001256536 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 225.25-36 chr7 93049422 93049883 + 0.75 NA Intergenic L1ME2z|LINE|L1 68327 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 168.75-97 chr8 52664218 52664486 + 0.75 NA intron (NM_001083617, intron 8 of 23) intron (NM_001083617, intron 8 of 23) 50083 NM_014781 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 183.5-21 chr15 81587113 81587428 + 0.75 NA Intergenic L1MEh|LINE|L1 -213057 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 293.5-8 chr4 51914578 51915053 + 0.75 NA 3' UTR (NM_001287757, exon 12 of 12) 3' UTR (NM_001287757, exon 12 of 12) 71236 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 410.75 chr15 61880828 61881578 + 0.75 NA intron (NM_001018088, intron 71 of 81) intron (NM_001018088, intron 71 of 81) 151285 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 187.5-34 chr2 103516271 103516609 + 0.75 NA Intergenic L1MEc|LINE|L1 -532011 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 150.25-77 chr5 13162237 13162547 + 0.75 NA Intergenic L1MC|LINE|L1 -129506 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 236.25-25 chr5 91492194 91492860 + 0.75 NA Intergenic Intergenic -109210 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 221.25-16 chr2 48674499 48674935 + 0.75 NA intron (NM_001198593, intron 10 of 10) intron (NM_001198593, intron 10 of 10) 56861 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 168.5-34 chr16 8657318 8657573 + 0.75 NA Intergenic MER113A|DNA|hAT-Charlie -17172 NM_020686 18 Hs.336768 NM_000663 ENSG00000183044 ABAT GABA-AT|GABAT|NPD009 4-aminobutyrate aminotransferase protein-coding 153.25-63 chr2 100282161 100282488 + 0.75 NA 3' UTR (NM_198461, exon 12 of 12) 3' UTR (NM_198461, exon 12 of 12) 40409 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 203.5-29 chr2 209050117 209050502 + 0.75 NA Intergenic Intergenic -373738 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 261-14 chr6 144624406 144625008 + 0.75 NA intron (NM_007124, intron 50 of 73) L2|LINE|L2 219052 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 198-31 chr5 18238252 18238695 + 0.75 NA Intergenic Intergenic 431199 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 183.5-68 chr7 88245302 88245716 + 0.75 NA Intergenic L1MA6|LINE|L1 -18516 NM_198901 6717 Hs.489040 NM_003130 ENSG00000075142 SRI CP-22|CP22|SCN|V19 sorcin protein-coding 148.25-71 chr5 118454121 118454453 + 0.75 NA intron (NR_104610, intron 9 of 9) intron (NR_104610, intron 9 of 9) 107830 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 208-17 chr2 135640516 135640881 + 0.75 NA intron (NM_001282799, intron 12 of 22) intron (NM_001282799, intron 12 of 22) -24699 NR_029672 406915 NR_029672 ENSG00000207654 MIR128-1 MIR128A|MIRN128-1|MIRN128A|mir-128-1 microRNA 128-1 ncRNA 167-95 chr9 32894249 32894550 + 0.75 NA Intergenic L1PA16|LINE|L1 107177 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 164.75-9 chr10 77252076 77252474 + 0.75 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 98486 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 198.75-43 chr5 129190603 129191138 + 0.75 NA Intergenic L1MA3|LINE|L1 93182 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 246.25-27 chr3 149847110 149847594 + 0.75 NA intron (NM_007282, intron 3 of 10) intron (NM_007282, intron 3 of 10) 34664 NM_183381 11342 Hs.12333 NM_007282 ENSG00000082996 RNF13 EIEE73|RZF ring finger protein 13 protein-coding 230-20 chr3 29737160 29737751 + 0.75 NA intron (NM_001003792, intron 4 of 13) MIRc|SINE|MIR 196701 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 172.25-58 chr5 19610382 19610788 + 0.75 NA intron (NM_001349559, intron 6 of 12) intron (NM_001349559, intron 6 of 12) 275687 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 191-47 chr7 3382965 3383488 + 0.75 NA intron (NM_152744, intron 1 of 44) AluJo|SINE|Alu 81974 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 150-38 chr2 80043488 80043754 + 0.75 NA intron (NM_001282598, intron 7 of 17) MIR3|SINE|MIR -177038 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 165-43 chr2 137096494 137096989 + 0.75 NA intron (NM_001316349, intron 4 of 27) MIRb|SINE|MIR 331196 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 178.5-66 chrX 87585872 87586137 + 0.75 NA intron (NM_057162, intron 1 of 10) L1MA1|LINE|L1 68202 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 147.25 chr1 42079079 42079319 + 0.75 NA Intergenic L1MA4A|LINE|L1 -43265 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 214.25-10 chr14 51315119 51315721 + 0.75 NA intron (NR_145423, intron 1 of 1) intron (NR_145423, intron 1 of 1) 12965 NR_145423 161342 NR_145423 ENSG00000258955 LINC00519 C14orf30|c14_5317 long intergenic non-protein coding RNA 519 ncRNA 220.75-11 chr15 51854867 51855227 + 0.75 NA intron (NM_014547, intron 1 of 9) intron (NM_014547, intron 1 of 9) 25394 NM_014547 29766 Hs.4998 NM_014547 ENSG00000138594 TMOD3 UTMOD tropomodulin 3 protein-coding 177.25-32 chr19 27614426 27614746 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -178845 NR_110691 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 240.25-12 chr18 68865675 68866044 + 0.75 NA intron (NM_001093729, intron 6 of 9) Charlie2b|DNA|hAT-Charlie 67779 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 163-19 chr11 76587801 76588193 + 0.75 NA Intergenic L1M5|LINE|L1 81941 NR_163259 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 235.75-27 chr7 3454540 3455076 + 0.75 NA intron (NM_152744, intron 1 of 44) L1MD2|LINE|L1 153556 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 189.25-24 chr19 35953931 35954394 + 0.75 NA intron (NR_136525, intron 1 of 4) MSR1|Satellite|Satellite 7047 NR_136525 105372383 Hs.641592 NR_136525 LOC105372383 - uncharacterized LOC105372383 ncRNA 175.25-13 chr11 104865879 104866453 + 0.75 NA Intergenic L1PA13|LINE|L1 32504 NR_034063 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 241.75-3 chr10 24984415 24984875 + 0.75 NA intron (NR_072993, intron 2 of 2) intron (NR_072993, intron 2 of 2) 31513 NM_145010 219670 Hs.534486 NM_145010 ENSG00000151023 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 198.25-20 chr2 71862486 71862888 + 0.75 NA Intergenic AluJb|SINE|Alu 285175 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 185.25-44 chr2 78834921 78835311 + 0.75 NA Intergenic Intergenic -190586 NM_001008387 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 156-36 chr19 36394508 36394786 + 0.75 NA intron (NM_001321917, intron 4 of 4) L2b|LINE|L2 -15446 NM_001297619 57677 Hs.35524 NM_020917 ENSG00000142065 ZFP14 ZNF531 ZFP14 zinc finger protein protein-coding 152.5-80 chr4 83852849 83853258 + 0.75 NA Intergenic MER31A|LTR|ERV1 316945 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 194.75-21 chr2 106362199 106362545 + 0.75 NA Intergenic Intergenic -7373 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 211.75-24 chr4 36111633 36111988 + 0.75 NA intron (NR_146894, intron 26 of 32) intron (NR_146894, intron 26 of 32) 132129 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 171.75-39 chr2 32810708 32811013 + 0.75 NA intron (NM_017735, intron 16 of 19) intron (NM_017735, intron 16 of 19) -14573 NR_027098 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 165-35 chr18 67904946 67905340 + 0.75 NA Intergenic Intergenic -90321 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 152.75-87 chr7 4662310 4662583 + 0.75 NA Intergenic AluSx1|SINE|Alu -19849 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 157.25-39 chr18 2947856 2948171 + 0.75 NA intron (NM_014646, intron 4 of 19) intron (NM_014646, intron 4 of 19) -1390 NR_026659 727896 Hs.673126 NR_026659 LOC727896 - cysteine and histidine rich domain containing 1 pseudogene pseudo 202.5-3 chr1 106867242 106867586 + 0.75 NA Intergenic L1MC3|LINE|L1 49175 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 178-64 chr7 94809022 94809406 + 0.75 NA Intergenic L1PA10|LINE|L1 -98380 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 156.25-81 chr6 70081931 70082324 + 0.75 NA intron (NM_001858, intron 15 of 50) Charlie10|DNA|hAT-Charlie 201070 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 172.5-42 chr22 41872568 41873032 + 0.75 NA intron (NR_103834, intron 4 of 21) AluSx1|SINE|Alu -28144 NR_029507 407039 NR_029507 ENSG00000207932 MIR33A MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a microRNA 33a ncRNA 149.75-96 chr8 59662535 59662801 + 0.75 NA Intergenic Intergenic 543458 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 197.25-21 chr16 63686796 63687249 + 0.75 NA Intergenic L1M2|LINE|L1 1435041 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 239.75-25 chr8 87934172 87934600 + 0.75 NA Intergenic MIR|SINE|MIR -60371 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 185.75-40 chr2 129392125 129392522 + 0.75 NA Intergenic L1MC3|LINE|L1 -118432 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 286.75-16 chr8 119586576 119587177 + 0.75 NA intron (NM_001330600, intron 14 of 25) intron (NM_001330600, intron 14 of 25) 6132 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 162-55 chr4 61957113 61957604 + 0.75 NA intron (NM_001371343, intron 16 of 23) L1PA8A|LINE|L1 204407 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 178-74 chr9 30659879 30660377 + 0.75 NA Intergenic Intergenic -251674 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 349.75-3 chr11 61717297 61717999 + 0.75 NA intron (NM_006133, intron 1 of 19) MIR|SINE|MIR -34988 NM_001127392 745 Hs.473109 NM_013279 ENSG00000124920 MYRF 11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47 myelin regulatory factor protein-coding 154-83 chr5 38985760 38986146 + 0.75 NA intron (NM_001285439, intron 7 of 38) AluSx|SINE|Alu 88446 NM_152756 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 213.25-42 chr7 13930012 13930500 + 0.75 NA intron (NM_001370555, intron 8 of 12) intron (NM_001370555, intron 8 of 12) 56258 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 241-25 chr4 139130119 139130508 + 0.75 NA intron (NM_001371339, intron 3 of 9) MLT1C|LTR|ERVL-MaLR -45899 NM_001276457 1998 Hs.634040 NM_006874 ENSG00000109381 ELF2 EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2 E74 like ETS transcription factor 2 protein-coding 160.75-35 chr14 58030600 58030909 + 0.75 NA intron (NM_001001872, intron 5 of 7) L1MB3|LINE|L1 121459 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 150.5-46 chr17 58839412 58839913 + 0.75 NA intron (NM_014906, intron 1 of 6) L1MC3|LINE|L1 83793 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 270.75-29 chr9 106598238 106599050 + 0.75 NA Intergenic Intergenic -2284 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 174.25-2 chr1 61485749 61486136 + 0.75 NA Intergenic L1ME4a|LINE|L1 -168300 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 170.5-63 chr6 129281238 129281547 + 0.75 NA intron (NM_000426, intron 18 of 64) intron (NM_000426, intron 18 of 64) 398251 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 145.75-26 chr13 31139585 31139853 + 0.75 NA intron (NM_006644, intron 14 of 17) intron (NM_006644, intron 14 of 17) 22185 NM_001349704 10808 Hs.743267 NM_006644 ENSG00000120694 HSPH1 HSP105|HSP105A|HSP105B|NY-CO-25 heat shock protein family H (Hsp110) member 1 protein-coding 252-9 chr5 119736758 119737458 + 0.75 NA Intergenic Intergenic 107549 NM_182761 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 208.5-43 chr3 154054684 154055056 + 0.75 NA intron (NR_037901, intron 2 of 3) L1MEg|LINE|L1 -66133 NM_001251962 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 200.75-15 chr14 50115466 50115851 + 0.75 NA intron (NR_049739, intron 2 of 4) intron (NR_049739, intron 2 of 4) 914 NR_049738 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 219-4 chr12 13229379 13229775 + 0.75 NA Intergenic Intergenic 32851 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 163.75-44 chr3 159002241 159002571 + 0.75 NA Intergenic Intergenic -66846 NM_001197113 100505385 Hs.134665 NM_001197113 ENSG00000283154 IQCJ-SCHIP1 - IQCJ-SCHIP1 readthrough protein-coding 210.75-39 chr6 123776670 123777080 + 0.75 NA Intergenic Intergenic -26971 NM_153355 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 173.75-66 chr7 134798516 134798962 + 0.75 NA intron (NM_033157, intron 1 of 14) intron (NM_033157, intron 1 of 14) 19105 NM_033138 800 Hs.490203 NM_004342 ENSG00000122786 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 197.75-48 chr4 92739912 92740360 + 0.75 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 435737 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 178.5-61 chr8 33795732 33796104 + 0.75 NA Intergenic Intergenic -195812 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 197-14 chr19 50709264 50709600 + 0.75 NA intron (NM_016148, intron 8 of 23) AluYj4|SINE|Alu 10370 NM_016148 50944 Hs.274255 NM_016148 ENSG00000161681 SHANK1 SPANK-1|SSTRIP|synamon SH3 and multiple ankyrin repeat domains 1 protein-coding 185.75-7 chr10 47323822 47324110 + 0.75 NA intron (NM_016204, intron 1 of 1) intron (NM_016204, intron 1 of 1) 1512 NM_016204 2658 Hs.279463 NM_016204 ENSG00000263761 GDF2 BMP-9|BMP9|HHT5 growth differentiation factor 2 protein-coding 196.75-55 chr8 113599743 113600224 + 0.75 NA Intergenic Intergenic -163044 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 176-12 chr12 18594359 18594712 + 0.75 NA exon (NM_004570, exon 29 of 32) exon (NM_004570, exon 29 of 32) 142974 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 167.25-26 chr16 7484302 7484574 + 0.75 NA intron (NM_145893, intron 1 of 13) L1ME1|LINE|L1 151593 NM_145892 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 188.25-69 chr9 95913872 95914301 + 0.75 NA intron (NM_020207, intron 4 of 18) L1ME1|LINE|L1 38078 NM_001010895 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 147.75-47 chr18 23643467 23643697 + 0.75 NA intron (NM_173505, intron 3 of 9) intron (NM_173505, intron 3 of 9) 19329 NM_173505 147463 Hs.355689 NM_173505 ENSG00000154065 ANKRD29 - ankyrin repeat domain 29 protein-coding 232.25-34 chr8 132595162 132595793 + 0.75 NA intron (NR_135913, intron 9 of 10) L2a|LINE|L2 -33998 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 191.75-37 chr20 20430590 20431002 + 0.75 NA intron (NM_020343, intron 37 of 39) intron (NM_020343, intron 37 of 39) 62692 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 297.5-5 chr11 40351297 40352136 + 0.75 NA intron (NM_020929, intron 2 of 4) L1MA3|LINE|L1 -58586 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 169.5-68 chr4 78684254 78684613 + 0.75 NA TTS (NR_038304) TTS (NR_038304) 38439 NR_038303 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 200.25-14 chr13 24907463 24907796 + 0.75 NA intron (NR_047594, intron 5 of 17) intron (NR_047594, intron 5 of 17) 15232 NM_018451 55835 Hs.513379 NM_018451 ENSG00000151849 CENPJ BM032|CENP-J|CPAP|LAP|LIP1|MCPH6|SASS4|SCKL4|Sas-4 centromere protein J protein-coding 170.75-7 chr11 102957730 102958107 + 0.75 NA Intergenic Intergenic -2186 NM_002427 4322 Hs.2936 NM_002427 ENSG00000137745 MMP13 CLG3|MANDP1|MDST|MMP-13 matrix metallopeptidase 13 protein-coding 148.5-55 chr21 27729560 27729827 + 0.75 NA intron (NR_024357, intron 1 of 3) L1MEf|LINE|L1 7314 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 248.5-5 chr13 87097793 87098355 + 0.75 NA Intergenic Intergenic 186154 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 179.25-59 chr5 26518815 26519154 + 0.75 NA Intergenic L1ME1|LINE|L1 519602 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 233-7 chr11 107085124 107085579 + 0.75 NA Intergenic Charlie25|DNA|hAT-Charlie -66875 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 159-26 chr17 33529874 33530143 + 0.75 NA non-coding (NR_037584, exon 3 of 3) non-coding (NR_037584, exon 3 of 3) 3752 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 174.75-50 chr4 101691821 101692348 + 0.75 NA Intergenic Intergenic -98523 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 149.5-29 chr15 58133462 58133855 + 0.75 NA Intergenic Intergenic -4511 NM_001320636 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 252.75-3 chr10 71987376 71988054 + 0.75 NA intron (NM_004273, intron 1 of 2) AluSz|SINE|Alu 23320 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 207-22 chr2 236834711 236835292 + 0.75 NA Intergenic THE1D-int|LTR|ERVL-MaLR 221166 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 215.75-20 chr2 112145355 112145939 + 0.75 NA intron (NM_001128165, intron 1 of 6) L1ME1|LINE|L1 7262 NM_153214 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 165.25-21 chr19 49191030 49191455 + 0.75 NA intron (NM_001195227, intron 16 of 23) AluSz|SINE|Alu 33450 NM_001195227 54795 Hs.467101 NM_017636 ENSG00000130529 TRPM4 LTrpC4|PFHB1B|TRPM4B|hTRPM4 transient receptor potential cation channel subfamily M member 4 protein-coding 207-25 chr3 85432633 85433120 + 0.75 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) 47166 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 239-13 chr4 71764325 71765008 + 0.75 NA intron (NM_000583, intron 4 of 12) intron (NM_000583, intron 4 of 12) 19413 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 212.25-51 chr8 133383564 133383971 + 0.75 NA Intergenic MIR|SINE|MIR -86463 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 148.75-71 chr4 91765835 91766141 + 0.75 NA Intergenic Intergenic 511314 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 200-4 chr1 202841442 202841798 + 0.75 NA Intergenic Intergenic -20134 NR_002929 148709 Hs.162880 NR_002929 ENSG00000234996 LOC148709 - actin gamma 1 pseudogene pseudo 328.25-4 chr16 8342456 8342979 + 0.75 NA Intergenic Intergenic 247121 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 168.25-68 chr6 78438180 78438555 + 0.75 NA Intergenic Intergenic 100942 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 159-71 chr6 55520621 55520854 + 0.75 NA intron (NM_001287746, intron 4 of 9) intron (NM_001287746, intron 4 of 9) 58477 NM_001287753 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 214.25-7 chr12 11926312 11926647 + 0.75 NA Intergenic L1P4|LINE|L1 -123382 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 306.75-2 chr13 96013330 96013921 + 0.75 NA intron (NM_020121, intron 4 of 38) intron (NM_020121, intron 4 of 38) 39776 NM_020121 55757 Hs.193226 NM_020121 ENSG00000102595 UGGT2 HUGT2|UGCGL2|UGT2 UDP-glucose glycoprotein glucosyltransferase 2 protein-coding 146.25-14 chr10 67859394 67859684 + 0.75 NA Intergenic AluJr|SINE|Alu -21351 NM_021800 56521 Hs.260720 NM_021800 ENSG00000108176 DNAJC12 HPANBH4|JDP1 DnaJ heat shock protein family (Hsp40) member C12 protein-coding 221.75-27 chr4 64915405 64915861 + 0.75 NA non-coding (NR_033976, exon 7 of 7) non-coding (NR_033976, exon 7 of 7) 88867 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 231-23 chr5 133995785 133996245 + 0.75 NA intron (NM_003374, intron 1 of 8) intron (NM_003374, intron 1 of 8) 8753 NR_036625 7416 Hs.519320 NM_003374 ENSG00000213585 VDAC1 PORIN|VDAC-1 voltage dependent anion channel 1 protein-coding 221-6 chr11 54929397 54929918 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 222825 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 201.75-25 chr2 223059674 223059965 + 0.75 NA Intergenic MIR3|SINE|MIR 7889 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 198.25-54 chr7 144633163 144633581 + 0.75 NA intron (NM_001350889, intron 2 of 5) intron (NM_001350889, intron 2 of 5) 105526 NM_001350884 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 156.25-62 chr4 90352854 90353166 + 0.75 NA intron (NM_207491, intron 3 of 7) intron (NM_207491, intron 3 of 7) 117979 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 167.75-24 chr13 21119698 21120013 + 0.75 NA Intergenic (TACATA)n|Simple_repeat|Simple_repeat -20659 NM_005870 10284 Hs.524899 NM_005870 ENSG00000150459 SAP18 2HOR0202|SAP18P Sin3A associated protein 18 protein-coding 195.25-31 chr2 226202722 226203055 + 0.75 NA Intergenic Charlie10|DNA|hAT-Charlie 60094 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 196.5-21 chr18 44733553 44734001 + 0.75 NA intron (NM_001130110, intron 2 of 3) intron (NM_001130110, intron 2 of 3) 52889 NM_015559 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding 282.5-15 chr7 92090501 92090902 + 0.75 NA intron (NM_147185, intron 38 of 49) L1ME3B|LINE|L1 43776 NM_000786 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 148-57 chr2 233523131 233523429 + 0.75 NA exon (NM_018218, exon 15 of 31) exon (NM_018218, exon 15 of 31) 42293 NM_018218 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 155.5-28 chr13 23148946 23149279 + 0.75 NA Intergenic Intergenic -31809 NM_000231 6445 Hs.37167 NM_000231 ENSG00000102683 SGCG 35DAG|A4|DAGA4|DMDA|DMDA1|LGMD2C|LGMDR5|MAM|SCARMD2|SCG3|gamma-SG sarcoglycan gamma protein-coding 160.5-40 chr16 14039290 14039643 + 0.75 NA Intergenic MLT1F|LTR|ERVL-MaLR -18389 NR_110915 101927348 Hs.569621 NR_110915 ENSG00000261856 LINC02186 - long intergenic non-protein coding RNA 2186 ncRNA 207.75-34 chr4 79615065 79615431 + 0.75 NA Intergenic L2c|LINE|L2 122655 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 154.75-94 chr7 136504469 136504955 + 0.75 NA Intergenic Intergenic -363940 NM_001006627 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 205.25-11 chr14 59625470 59625949 + 0.75 NA intron (NM_021136, intron 3 of 8) HAL1b|LINE|L1 5105 NM_206852 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 232.75 chr1 34246288 34246790 + 0.75 NA Intergenic MLT1I-int|LTR|ERVL-MaLR 69632 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 279.75-8 chr2 146574266 146574813 + 0.75 NA Intergenic L1ME4c|LINE|L1 -12518 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 238.25-24 chr4 93783336 93783816 + 0.75 NA Intergenic Intergenic -45177 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 247.5-2 chr1 95976382 95976968 + 0.75 NA Intergenic Intergenic -15393 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 203-38 chr5 127642200 127642605 + 0.75 NA Intergenic Intergenic -6619 NM_001048252 613212 Hs.66194 NM_001048252 ENSG00000205279 CTXN3 KABE cortexin 3 protein-coding 151.75-118 chr9 28551383 28551878 + 0.75 NA intron (NM_152570, intron 2 of 6) HAL1|LINE|L1 167675 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 242-22 chr6 144298199 144298776 + 0.75 NA intron (NM_007124, intron 1 of 73) intron (NM_007124, intron 1 of 73) 6750 NM_007124 7402 Hs.133135 NM_007124 ENSG00000152818 UTRN DMDL|DRP|DRP1 utrophin protein-coding 155-30 chr14 52927161 52927406 + 0.75 NA intron (NM_006832, intron 2 of 14) (A)n|Simple_repeat|Simple_repeat 23767 NM_001135000 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 284-5 chr2 207174455 207174987 + 0.75 NA Intergenic Intergenic -7475 NM_001270943 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 179.5-31 chr17 63105618 63105940 + 0.75 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 139544 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 325.75-4 chr2 43510000 43510546 + 0.75 NA intron (NM_001083953, intron 22 of 37) L1MC5a|LINE|L1 85701 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 279.75 chr1 89209847 89210316 + 0.75 NA Intergenic LOR1-int|LTR|ERV1 -11139 NM_052941 115361 Hs.409925 NM_052941 ENSG00000162654 GBP4 Mpa2 guanylate binding protein 4 protein-coding 156-28 chr15 60245219 60245587 + 0.75 NA Intergenic L1MCa|LINE|L1 152583 NM_001002857 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 449.75 chr13 61432559 61433899 + 0.75 NA Intergenic Intergenic -5283 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 172.5-21 chr13 77733548 77733883 + 0.75 NA intron (NM_001242868, intron 2 of 6) intron (NM_001242868, intron 2 of 6) -7445 NM_001242871 122060 Hs.349955 NM_144595 ENSG00000139737 SLAIN1 C13orf32 SLAIN motif family member 1 protein-coding 220.25-14 chr15 86567150 86567630 + 0.75 NA intron (NM_152336, intron 22 of 24) intron (NM_152336, intron 22 of 24) -250422 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 204.25-57 chrX 99734849 99735278 + 0.75 NA Intergenic Intergenic 675210 NM_001105243 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 241.75-14 chr3 28891658 28892252 + 0.75 NA Intergenic Intergenic 316677 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 161-54 chr3 32020999 32021289 + 0.75 NA Intergenic MLT1B|LTR|ERVL-MaLR -39294 NM_017784 114884 Hs.150122 NM_017784 ENSG00000144645 OSBPL10 ORP10|OSBP9 oxysterol binding protein like 10 protein-coding 215.25-7 chr10 37811122 37811510 + 0.75 NA intron (NM_001352493, intron 5 of 6) Tigger2|DNA|TcMar-Tigger -16141 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 150.25-44 chr18 27737543 27737796 + 0.75 NA Intergenic THE1D|LTR|ERVL-MaLR 298972 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 209.5-36 chr3 180193840 180194383 + 0.75 NA Intergenic Intergenic -157174 NM_001256753 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 314.25-5 chr6 154161763 154162280 + 0.75 NA intron (NM_015553, intron 11 of 11) L2a|LINE|L2 72259 NM_001285528 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 211.25-27 chr20 39146832 39147384 + 0.75 NA Intergenic L3|LINE|CR1 77640 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 290.5-2 chr10 96147138 96147633 + 0.75 NA intron (NM_001330737, intron 4 of 6) HAL1|LINE|L1 16763 NM_001330734 9849 Hs.600823 NM_014803 ENSG00000177853 ZNF518A ZNF518 zinc finger protein 518A protein-coding 222.75-39 chr9 84033585 84034051 + 0.75 NA Intergenic L1MA1|LINE|L1 -29625 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 181.75-29 chr16 48293499 48293809 + 0.75 NA intron (NM_031490, intron 8 of 14) MER31B|LTR|ERV1 -46115 NM_001370497 85320 Hs.652267 NM_032583 ENSG00000121270 ABCC11 EWWD|MRP8|WW ATP binding cassette subfamily C member 11 protein-coding 193.75-59 chr9 27710184 27710696 + 0.75 NA Intergenic L1M1|LINE|L1 -136574 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 355.75-6 chr5 64941479 64942248 + 0.75 NA intron (NM_005869, intron 11 of 13) MIRb|SINE|MIR 172933 NM_005869 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 172.25-70 chr8 67770015 67770359 + 0.75 NA Intergenic L3|LINE|CR1 -23827 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 280-3 chr16 75773790 75774465 + 0.75 NA Intergenic Intergenic -47637 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 170.5-38 chr2 121476399 121476826 + 0.75 NA intron (NM_015282, intron 8 of 38) intron (NM_015282, intron 8 of 38) -54268 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 170.25-62 chr6 91752687 91753051 + 0.75 NA Intergenic MLT1F2|LTR|ERVL-MaLR -62441 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 222.5-34 chr3 153136031 153136412 + 0.75 NA Intergenic AluSx|SINE|Alu -26005 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 174.5-76 chr7 81912386 81912750 + 0.75 NA Intergenic L1M3c|LINE|L1 -96609 NR_110076 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 151.5-93 chr7 144693894 144694141 + 0.75 NA intron (NM_001042482, intron 3 of 7) L1PA2|LINE|L1 44881 NM_001350884 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 225-17 chr5 41655848 41656453 + 0.75 NA Intergenic L1ME4a|LINE|L1 -145549 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 213.25-19 chr2 52857474 52857927 + 0.75 NA Intergenic Intergenic -155085 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 215.25-9 chr11 98022479 98023083 + 0.75 NA Intergenic Intergenic -998168 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 184.5-5 chr1 69555754 69556122 + 0.75 NA Intergenic L1ME3G|LINE|L1 -11396 NM_001366837 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 192.5-6 chr10 64543873 64544217 + 0.75 NA Intergenic L1MA9|LINE|L1 -281483 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 255.75-4 chr10 59177965 59178397 + 0.75 NA intron (NM_001143774, intron 1 of 4) (TTAATA)n|Simple_repeat|Simple_repeat 714 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 157.25-90 chr7 85579069 85579354 + 0.75 NA Intergenic Intergenic 158089 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 146.5-72 chr4 40285311 40285621 + 0.75 NA Intergenic AluSx1|SINE|Alu -21719 NR_121641 101060498 Hs.351492 NR_121640 ENSG00000249241 LINC02265 - long intergenic non-protein coding RNA 2265 ncRNA 202-14 chr14 81031878 81032465 + 0.75 NA intron (NM_001142626, intron 1 of 8) L1M2c|LINE|L1 76550 NM_001018036 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 200.75-41 chr5 38178414 38178748 + 0.75 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 30101 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 168.75-89 chr6 84958615 84959021 + 0.75 NA Intergenic THE1B-int|LTR|ERVL-MaLR -194220 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 360.25-3 chr8 119848253 119848822 + 0.75 NA intron (NM_024094, intron 3 of 8) L1MB8|LINE|L1 7357 NM_024094 79075 Hs.315167 NM_024094 ENSG00000136982 DSCC1 DCC1 DNA replication and sister chromatid cohesion 1 protein-coding 162-34 chr2 76509994 76510301 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR -475818 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 204.25-31 chr3 96282976 96283481 + 0.75 NA Intergenic Intergenic -76736 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 285.5-11 chr4 90183742 90184338 + 0.75 NA intron (NM_001145065, intron 1 of 10) intron (NM_001145065, intron 1 of 10) -50991 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 159-46 chr20 9381578 9381862 + 0.75 NA intron (NM_000933, intron 10 of 35) L1M5|LINE|L1 73920 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 225.75-13 chr2 203721289 203721684 + 0.75 NA intron (NM_001243078, intron 1 of 2) intron (NM_001243078, intron 1 of 2) 14847 NM_001243077 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 235.25-3 chr10 47011242 47011829 + 0.75 NA Intergenic L1P4|LINE|L1 99813 NM_001352539 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 201.25-10 chr13 39069745 39070066 + 0.75 NA Intergenic THE1D|LTR|ERVL-MaLR 31449 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 207-45 chr6 65327052 65327359 + 0.75 NA intron (NM_001292009, intron 11 of 43) intron (NM_001292009, intron 11 of 43) 25787 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 211.75-43 chr8 121014375 121014893 + 0.75 NA Intergenic Intergenic -202588 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 179.25-8 chr1 217077624 217077979 + 0.75 NA promoter-TSS (NM_001243507) promoter-TSS (NM_001243507) 486 NM_001350125 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 266.25-16 chr6 54000800 54001343 + 0.75 NA non-coding (NR_046832, exon 2 of 4) non-coding (NR_046832, exon 2 of 4) 2181 NR_046832 100874282 Hs.571169 NR_046832 ENSG00000236996 MLIP-IT1 - MLIP intronic transcript 1 ncRNA 159.75 chr1 30650772 30651215 + 0.75 NA Intergenic Intergenic -67779 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 241-24 chr4 107650060 107650506 + 0.75 NA intron (NM_005443, intron 9 of 11) intron (NM_005443, intron 9 of 11) 69951 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 396.25-2 chr3 2972244 2973208 + 0.75 NA intron (NM_175607, intron 13 of 24) intron (NM_175607, intron 13 of 24) 80511 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 187.25-27 chr16 87080464 87080822 + 0.75 NA Intergenic L1MCc|LINE|L1 22859 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 204.25-42 chr5 120401033 120401595 + 0.75 NA Intergenic AluY|SINE|Alu -62964 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 161.5-41 chr17 66092606 66092868 + 0.75 NA intron (NM_001302891, intron 6 of 24) L1MA8|LINE|L1 99155 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 183.5-11 chr12 22517588 22518108 + 0.75 NA intron (NM_001286173, intron 8 of 27) intron (NM_001286173, intron 8 of 27) 26349 NM_001286174 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 162.25-7 chr10 75195830 75196153 + 0.75 NA Intergenic AluSx1|SINE|Alu -14163 NM_001324088 7417 Hs.355927 NM_003375 ENSG00000165637 VDAC2 POR voltage dependent anion channel 2 protein-coding 169.75-5 chr1 93409117 93409410 + 0.75 NA Intergenic AluJb|SINE|Alu -38855 NM_017737 54874 Hs.134060 NM_017737 ENSG00000137942 FNBP1L C1orf39|TOCA1 formin binding protein 1 like protein-coding 289.25-10 chr3 169841792 169842324 + 0.75 NA intron (NM_001277127, intron 8 of 8) AluSg4|SINE|Alu 20167 NM_001080460 344657 Hs.319484 NM_001080460 ENSG00000188306 LRRIQ4 LRRC64 leucine rich repeats and IQ motif containing 4 protein-coding 187.25-17 chr12 50609079 50609402 + 0.75 NA intron (NM_173602, intron 1 of 37) intron (NM_173602, intron 1 of 37) 104255 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 165.5-8 chr1 159283346 159283769 + 0.75 NA Intergenic Intergenic -6157 NM_002001 2205 Hs.897 NM_002001 ENSG00000179639 FCER1A FCE1A|FcERI Fc fragment of IgE receptor Ia protein-coding 236.25-3 chr1 204200892 204201490 + 0.75 NA intron (NM_198447, intron 3 of 4) MIR|SINE|MIR -4700 NM_002256 3814 Hs.95008 NM_002256 ENSG00000170498 KISS1 HH13|KiSS-1 KiSS-1 metastasis suppressor protein-coding 223.5-29 chr3 185233126 185233585 + 0.75 NA intron (NM_001966, intron 3 of 6) L1M4|LINE|L1 19917 NR_106712 100847054 NR_106712 ENSG00000264614 MIR5588 - microRNA 5588 ncRNA 245.25-12 chr20 44099648 44100015 + 0.75 NA Intergenic Intergenic 87357 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 224-6 chr10 56606035 56606411 + 0.75 NA Intergenic Intergenic -244950 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 161-76 chr6 114732831 114733075 + 0.75 NA Intergenic Intergenic -670076 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 270.75-18 chr3 107422560 107423089 + 0.75 NA Intergenic Intergenic -8106 NR_110039 101929607 Hs.252565 NR_110039 ENSG00000273125 LINC01990 - long intergenic non-protein coding RNA 1990 ncRNA 197.5-9 chr11 74453128 74453555 + 0.75 NA Intergenic MIR|SINE|MIR 14214 NM_005472 10008 Hs.523899 NM_005472 ENSG00000175538 KCNE3 BRGDA6|HOKPP|HYPP|MiRP2 potassium voltage-gated channel subfamily E regulatory subunit 3 protein-coding 171-53 chr5 63368634 63368933 + 0.75 NA Intergenic L1ME2|LINE|L1 593509 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 198.75-7 chr11 26763933 26764421 + 0.75 NA Intergenic MER41-int|LTR|ERV1 -42117 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 146.75-46 chr2 3542074 3542341 + 0.75 NA non-coding (NR_148533, exon 8 of 8) non-coding (NR_148533, exon 8 of 8) 16126 NM_001286837 246243 Hs.568006 NM_002936 ENSG00000171865 RNASEH1 H1RNA|PEOB2|RNH1 ribonuclease H1 protein-coding 341.25-6 chr6 131926847 131927429 + 0.75 NA Intergenic Charlie5|DNA|hAT-Charlie 24234 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 215.5-2 chr1 218124607 218125008 + 0.75 NA Intergenic L1ME4a|LINE|L1 81302 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 216.75-20 chr2 204345443 204345811 + 0.75 NA Intergenic L1MC3|LINE|L1 -199848 NM_001302769 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 188.25-17 chr15 92428545 92428874 + 0.75 NA intron (NM_001330416, intron 1 of 4) intron (NM_001330416, intron 1 of 4) 34822 NM_001330416 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 192-13 chr12 38479600 38480000 + 0.75 NA Intergenic MIR|SINE|MIR 163026 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 228.25-5 chr13 104239974 104240424 + 0.75 NA Intergenic Intergenic 814999 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 169.75-77 chr9 106281178 106281519 + 0.75 NA Intergenic Intergenic -319580 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 171.75-36 chr17 67182715 67183107 + 0.75 NA intron (NM_001330447, intron 12 of 32) intron (NM_001330447, intron 12 of 32) -61865 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 180.25-82 chrX 81372793 81373124 + 0.75 NA Intergenic Intergenic 170856 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 177-66 chr8 25765635 25766173 + 0.75 NA Intergenic Intergenic 279509 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 225.75-8 chr13 61948142 61948654 + 0.75 NA Intergenic Intergenic 81150 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 226.75-5 chr12 1223608 1224041 + 0.75 NA intron (NR_027948, intron 12 of 19) intron (NR_027948, intron 12 of 19) 196076 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 261.5-23 chr6 72759826 72760237 + 0.75 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 129536 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 184.75-44 chr2 81369082 81369448 + 0.75 NA Intergenic Intergenic 97681 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 164.5-97 chr8 104809485 104809816 + 0.75 NA Intergenic L2|LINE|L2 -220626 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 254.75-8 chr14 23823751 23824191 + 0.75 NA Intergenic Intergenic -129799 NM_001282987 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 201-18 chr17 21367827 21368385 + 0.75 NA Intergenic Intergenic -8251 NM_021012 3768 Hs.200629 NM_021012 ENSG00000184185 KCNJ12 IRK-2|IRK2|KCNJN1|Kir2.2|Kir2.2v|hIRK|hIRK1|hkir2.2x|kcnj12x potassium voltage-gated channel subfamily J member 12 protein-coding 186.75-65 chr4 69629273 69629661 + 0.75 NA intron (NM_001301239, intron 1 of 4) MER77|LTR|ERVL 10175 NM_001301233 574537 Hs.225950 NM_001105677 ENSG00000271271 UGT2A2 - UDP glucuronosyltransferase family 2 member A2 protein-coding 158.5-95 chr8 70329434 70329712 + 0.75 NA intron (NM_001321703, intron 1 of 22) L1ME3|LINE|L1 73817 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 189.5-17 chr13 101690204 101690533 + 0.75 NA intron (NM_001271754, intron 6 of 10) intron (NM_001271754, intron 6 of 10) 200416 NM_001271756 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 228-14 chr2 118782611 118783040 + 0.75 NA Intergenic Intergenic 65358 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 195.25-47 chr5 151794601 151795108 + 0.75 NA intron (NM_198395, intron 5 of 11) intron (NM_198395, intron 5 of 11) -22678 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 236.5-31 chr6 65959936 65960523 + 0.75 NA Intergenic Intergenic 172350 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 159-13 chr11 44992283 44992536 + 0.75 NA Intergenic Intergenic 18507 NR_026681 221122 Hs.551656 NR_026681 ENSG00000254654 LINC02685 - long intergenic non-protein coding RNA 2685 ncRNA 169.75-61 chr5 91430283 91430674 + 0.75 NA Intergenic AluY|SINE|Alu -47161 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 181.25-38 chr3 88913093 88913483 + 0.75 NA Intergenic Intergenic -194333 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 154-58 chr2 172169764 172170135 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR 66943 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 231-18 chr5 26305236 26305719 + 0.75 NA Intergenic Intergenic 733109 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 187.25-13 chr11 113502346 113502620 + 0.75 NA Intergenic Intergenic -27085 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 156.25-20 chr13 58120954 58121357 + 0.75 NA Intergenic L2a|LINE|L2 -44672 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 158-72 chr5 116725190 116725515 + 0.75 NA Intergenic Intergenic 36857 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 201.75-18 chr18 39659911 39660429 + 0.75 NA intron (NR_024391, intron 2 of 3) intron (NR_024391, intron 2 of 3) -16551 NR_049847 100847025 NR_049847 ENSG00000266148 MIR5583-1 - microRNA 5583-1 ncRNA 169.5 chr1 44101798 44102167 + 0.75 NA Intergenic AluJb|SINE|Alu -16839 NM_173484 128209 Hs.567674 NM_173484 ENSG00000171872 KLF17 ZNF393|Zfp393 Kruppel like factor 17 protein-coding 157.25-76 chr5 111611007 111611305 + 0.75 NA intron (NR_040093, intron 1 of 6) L1PA16|LINE|L1 -98559 NM_001308058 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 157-30 chr14 26573388 26573791 + 0.75 NA intron (NM_001366391, intron 2 of 5) intron (NM_001366391, intron 2 of 5) -20159 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 165.75-6 chr1 101690273 101690741 + 0.75 NA Intergenic L2c|LINE|L2 156573 NM_001288821 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 263.5 chr1 45467801 45468469 + 0.75 NA intron (NM_007170, intron 1 of 10) AluJb|SINE|Alu 23028 NM_007170 10420 Hs.591499 NM_007170 ENSG00000070759 TESK2 - testis associated actin remodelling kinase 2 protein-coding 166.75-11 chr10 66755042 66755504 + 0.75 NA intron (NM_001127384, intron 9 of 17) L1MB8|LINE|L1 -170763 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 197.75-10 chr10 98162881 98163422 + 0.75 NA intron (NM_138469, intron 2 of 9) intron (NM_138469, intron 2 of 9) 28494 NM_001351015 27291 Hs.419800 NM_014472 ENSG00000166024 R3HCC1L C10orf28|GIDRP86|GIDRP88|PSORT R3H domain and coiled-coil containing 1 like protein-coding 249.5-3 chr1 224083190 224083832 + 0.75 NA Intergenic AluSz|SINE|Alu -30600 NM_001136115 23219 Hs.64691 NM_015176 ENSG00000143756 FBXO28 CENP-30|Fbx28 F-box protein 28 protein-coding 222-17 chr4 44792471 44792963 + 0.75 NA Intergenic AluY|SINE|Alu -66083 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 162.75-10 chr10 88241078 88241411 + 0.75 NA Intergenic L1M5|LINE|L1 342074 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 299-3 chr14 62896590 62897364 + 0.75 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 148481 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 150.5-45 chr15 92167178 92167443 + 0.75 NA intron (NM_001145044, intron 10 of 10) intron (NM_001145044, intron 10 of 10) -226571 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 196-50 chr8 85600327 85600639 + 0.75 NA Intergenic Intergenic 55193 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 186.75-55 chr3 113128449 113128774 + 0.75 NA Intergenic Intergenic 39120 NR_110823 101929717 Hs.638426 NR_110823 ENSG00000243795 LINC02044 - long intergenic non-protein coding RNA 2044 ncRNA 159-55 chr3 88313785 88314109 + 0.75 NA Intergenic Intergenic -24509 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 190-49 chr5 34736502 34736963 + 0.75 NA intron (NM_001145525, intron 4 of 19) intron (NM_001145525, intron 4 of 19) 49173 NM_001145523 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 178-18 chr14 37283560 37284027 + 0.75 NA intron (NM_138731, intron 7 of 13) intron (NM_138731, intron 7 of 13) 85856 NM_138731 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 171-16 chr13 101324819 101325081 + 0.75 NA intron (NM_001350749, intron 7 of 43) L1P1|LINE|L1 91558 NM_001350751 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 166.5-84 chr7 101600803 101601099 + 0.75 NA Intergenic AluSz|SINE|Alu 28345 NM_138403 93408 Hs.247831 NM_138403 ENSG00000106436 MYL10 MYLC2PL|PLRLC myosin light chain 10 protein-coding 146.75-67 chr22 34859429 34859732 + 0.75 NA intron (NR_138042, intron 3 of 4) MLT1H|LTR|ERVL-MaLR 138336 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 250.75-10 chr15 66340980 66341483 + 0.75 NA exon (NM_017858, exon 7 of 8) exon (NM_017858, exon 7 of 8) 6111 NR_004388 692149 NR_004388 ENSG00000252712 SCARNA14 U100 small Cajal body-specific RNA 14 ncRNA 283.75-7 chr21 15216364 15217295 + 0.75 NA Intergenic Intergenic -151829 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 168.5-86 chr5 178587596 178588034 + 0.75 NA intron (NM_173465, intron 1 of 28) intron (NM_173465, intron 1 of 28) 2578 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 268.25-2 chr1 156420900 156421406 + 0.75 NA promoter-TSS (NR_029691) promoter-TSS (NR_029691) 616 NR_135265 10485 Hs.380027 NM_006365 ENSG00000125462 C1orf61 CROC4 chromosome 1 open reading frame 61 protein-coding 158.75-22 chr13 112857462 112857694 + 0.75 NA intron (NM_032189, intron 20 of 28) intron (NM_032189, intron 20 of 28) -102847 NR_046661 100874205 Hs.658692 NR_046661 ENSG00000232684 ATP11A-AS1 - ATP11A antisense RNA 1 ncRNA 167.25-37 chr2 155007379 155007727 + 0.75 NA Intergenic L1MEf|LINE|L1 308858 NM_002239 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 188.75-47 chr4 62764391 62764753 + 0.75 NA Intergenic L1ME2|LINE|L1 -602807 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 204-28 chr3 155206638 155207146 + 0.75 NA Intergenic HAL1|LINE|L1 -34053 NR_125399 101928190 Hs.121410 NR_125399 ENSG00000241336 LINC01487 - long intergenic non-protein coding RNA 1487 ncRNA 255.5-6 chr11 100202073 100202444 + 0.75 NA intron (NM_001243270, intron 14 of 23) intron (NM_001243270, intron 14 of 23) -485030 NM_152432 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 207-27 chr3 179955994 179956579 + 0.75 NA intron (NM_001349396, intron 1 of 13) intron (NM_001349396, intron 1 of 13) 17939 NM_001349387 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 198.75-45 chr7 9115236 9115511 + 0.75 NA Intergenic Intergenic -518897 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 308-4 chr15 72203310 72203853 + 0.75 NA intron (NM_182470, intron 8 of 10) intron (NM_182470, intron 8 of 10) -5794 NM_001012642 196996 Hs.596332 NM_001012642 ENSG00000175318 GRAMD2A GRAMD2 GRAM domain containing 2A protein-coding 224-4 chr1 113379102 113379633 + 0.75 NA Intergenic Intergenic -11148 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 258.25-2 chr1 55165107 55165581 + 0.75 NA intron (NM_015306, intron 7 of 67) intron (NM_015306, intron 7 of 67) 50020 NM_015306 23358 Hs.477009 NM_015306 ENSG00000162402 USP24 - ubiquitin specific peptidase 24 protein-coding 226.75-27 chr9 28498928 28499514 + 0.75 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 220084 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 168.5-61 chr21 28214399 28214663 + 0.75 NA intron (NR_126012, intron 2 of 5) L4_B_Mam|LINE|RTE-X 14136 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 175.75-35 chr2 125833960 125834312 + 0.75 NA Intergenic Intergenic 283849 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 229-23 chr8 18838885 18839240 + 0.75 NA intron (NM_015310, intron 4 of 15) intron (NM_015310, intron 4 of 15) -30195 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 202.5-39 chr3 35241791 35242185 + 0.75 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 152035 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 255.5-7 chr11 128012039 128012635 + 0.75 NA Intergenic L1PA11|LINE|L1 -196429 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 213.5-29 chr3 52752145 52752606 + 0.75 NA intron (NM_003157, intron 6 of 15) intron (NM_003157, intron 6 of 15) 18565 NM_003157 6787 Hs.631921 NM_003157 ENSG00000114904 NEK4 NRK2|STK2|pp12301 NIMA related kinase 4 protein-coding 213-6 chr12 15701735 15702335 + 0.75 NA intron (NM_004447, intron 1 of 20) intron (NM_004447, intron 1 of 20) 87353 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 178.25-12 chr12 20054794 20055116 + 0.75 NA intron (NR_040098, intron 2 of 2) intron (NR_040098, intron 2 of 2) 40270 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 311-7 chr6 66498100 66498531 + 0.75 NA Intergenic Intergenic 710436 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 185.75-37 chr2 36487029 36487345 + 0.75 NA intron (NM_016441, intron 7 of 16) intron (NM_016441, intron 7 of 16) 110981 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 193.25-64 chr8 136533377 136533968 + 0.75 NA intron (NR_147196, intron 1 of 5) THE1A|LTR|ERVL-MaLR 2874 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 172.5-19 chr12 71679966 71680359 + 0.75 NA 3' UTR (NM_031435, exon 3 of 3) 3' UTR (NM_031435, exon 3 of 3) -5920 NM_018279 55266 Hs.644802 NM_018279 ENSG00000139291 TMEM19 - transmembrane protein 19 protein-coding 239.5-6 chr11 33965254 33965746 + 0.75 NA Intergenic L1MB7|LINE|L1 -73424 NM_005574 4005 Hs.34560 NM_005574 ENSG00000135363 LMO2 LMO-2|RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 protein-coding 212-31 chr5 129485242 129485570 + 0.75 NA intron (NM_133638, intron 2 of 22) L1M5|LINE|L1 -24717 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 164.25-58 chr3 102112133 102112511 + 0.75 NA Intergenic Intergenic -51383 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 224.5-8 chr11 128827382 128827803 + 0.75 NA Intergenic Intergenic 14877 NM_000220 3758 Hs.527830 NM_000220 ENSG00000151704 KCNJ1 KIR1.1|ROMK|ROMK1 potassium voltage-gated channel subfamily J member 1 protein-coding 172.5-45 chr3 39206704 39207122 + 0.75 NA Intergenic MER115|DNA|hAT-Tip100 -14318 NM_001351377 165904 Hs.447868 NM_194293 ENSG00000168334 XIRP1 CMYA1|Xin xin actin binding repeat containing 1 protein-coding 388.5-2 chr2 194429838 194430599 + 0.75 NA Intergenic Intergenic 85949 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 270.25-2 chr10 122295257 122295786 + 0.75 NA intron (NM_001318189, intron 7 of 15) intron (NM_001318189, intron 7 of 15) 24225 NM_144587 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 211.25-38 chr5 82587353 82587735 + 0.75 NA Intergenic Intergenic -252611 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 157.25-49 chr2 81416528 81416798 + 0.75 NA Intergenic Intergenic 50283 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 263.25-18 chr4 124357801 124358376 + 0.75 NA Intergenic L1MA3|LINE|L1 200346 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 191.75-39 chr22 25596271 25596585 + 0.75 NA intron (NM_001362778, intron 1 of 19) intron (NM_001362778, intron 1 of 19) 31753 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 197.75-11 chr10 104793798 104794282 + 0.75 NA intron (NM_014978, intron 1 of 26) intron (NM_014978, intron 1 of 26) -127824 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 200.5-4 chr10 57441753 57442129 + 0.75 NA Intergenic L1MB7|LINE|L1 -137382 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 214-4 chr1 212817063 212817474 + 0.75 NA TTS (NM_001042553) TTS (NM_001042553) 25374 NM_001146169 128387 Hs.530538 NM_001042552 ENSG00000203705 TATDN3 - TatD DNase domain containing 3 protein-coding 263.5-13 chr19 1221629 1222165 + 0.75 NA intron (NM_000455, intron 6 of 9) intron (NM_000455, intron 6 of 9) 16098 NM_000455 6794 Hs.515005 NM_000455 ENSG00000118046 STK11 LKB1|PJS|hLKB1 serine/threonine kinase 11 protein-coding 223.25-15 chr21 32837432 32838137 + 0.75 NA Intergenic Intergenic -24081 NM_001162496 56245 Hs.517235 NM_019596 ENSG00000205929 C21orf62 B37|C21orf120|PRED81 chromosome 21 open reading frame 62 protein-coding 254-14 chr8 75586312 75586835 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 46605 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 158-12 chr11 41568539 41568857 + 0.75 NA Intergenic L1MB1|LINE|L1 -109046 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 167-80 chr7 80360394 80360797 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR 13844 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 185.75-69 chr6 62892287 62892710 + 0.75 NA Intergenic Intergenic 427479 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 315.25-3 chr14 63061320 63061792 + 0.75 NA Intergenic Intergenic -16098 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 161.75-10 chr11 114378457 114378926 + 0.75 NA intron (NR_120567, intron 2 of 2) MIR1_Amn|SINE|MIR 1348 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 217-13 chr2 13826632 13827116 + 0.75 NA Intergenic Intergenic 574084 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 157-109 chrX 112379749 112380061 + 0.75 NA intron (NM_001004308, intron 2 of 2) L1ME1|LINE|L1 296880 NM_001004308 340595 Hs.368140 NM_001004308 ENSG00000187823 RTL4 Mar4|Mart4|SIRH11|ZCCHC16 retrotransposon Gag like 4 protein-coding 222.75-22 chr3 39023106 39023724 + 0.75 NA intron (NM_001349253, intron 2 of 29) L1ME4b|LINE|L1 28529 NM_001349253 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 191-52 chr8 104633264 104633646 + 0.75 NA Intergenic Intergenic -44431 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 173.5-14 chr10 108887520 108887917 + 0.75 NA Intergenic Intergenic -818425 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 163.75-34 chr2 225001637 225001948 + 0.75 NA intron (NM_014689, intron 1 of 55) MLT1A0|LTR|ERVL-MaLR 8748 NR_039641 100616207 NR_039641 ENSG00000263828 MIR4439 - microRNA 4439 ncRNA 164.25-14 chr1 220358744 220359208 + 0.75 NA Intergenic Intergenic -86523 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 225.25-7 chr11 19048292 19048674 + 0.75 NA Intergenic L1MA7|LINE|L1 11534 NM_001303615 117194 Hs.350566 NM_054030 ENSG00000183695 MRGPRX2 MGRG3|MRGX2 MAS related GPR family member X2 protein-coding 256.5-12 chr4 6707800 6708243 + 0.75 NA 3' UTR (NM_203462, exon 2 of 2) 3' UTR (NM_203462, exon 2 of 2) 1844 NM_203462 114932 Hs.593159 NM_152301 ENSG00000178988 MRFAP1L1 PP784 Morf4 family associated protein 1 like 1 protein-coding 197.75-40 chr3 46603941 46604467 + 0.75 NA Intergenic L1MD2|LINE|L1 -8321 NM_001195442 100132146 Hs.679623 NM_001195442 ENSG00000283473 FAM240A - family with sequence similarity 240 member A protein-coding 178.5-13 chr11 108619882 108620225 + 0.75 NA Intergenic Intergenic -26285 NM_001308019 23086 Hs.28540 NM_015065 ENSG00000110723 EXPH5 SLAC2-B|SLAC2B exophilin 5 protein-coding 209.75-37 chr7 38026522 38026921 + 0.75 NA Intergenic L1M5|LINE|L1 105402 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 199.25-34 chr2 165183997 165184342 + 0.75 NA intron (NM_006922, intron 2 of 27) intron (NM_006922, intron 2 of 27) 19881 NM_001081677 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 209.25-46 chr8 48291020 48291488 + 0.75 NA Intergenic L1MD1|LINE|L1 -260313 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 157.25-110 chr9 69517957 69518188 + 0.75 NA intron (NM_001163, intron 1 of 12) intron (NM_001163, intron 1 of 12) 154299 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 231.5 chr1 95855871 95856322 + 0.75 NA Intergenic L1ME1|LINE|L1 -135972 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 215.75-44 chrX 70722966 70723349 + 0.75 NA intron (NM_001003811, intron 13 of 30) MIRb|SINE|MIR 123138 NR_145758 109617015 NR_145758 ENSG00000280704 SNORD3E - small nucleolar RNA, C/D box 3E snoRNA 174.75-63 chr7 82682124 82682500 + 0.75 NA Intergenic Intergenic -238356 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 259.25-4 chr14 84980989 84981608 + 0.75 NA Intergenic Intergenic -290634 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 205.5-33 chr4 44507801 44508372 + 0.75 NA Intergenic Intergenic -59277 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 218-21 chr4 109788230 109788655 + 0.75 NA intron (NM_001331035, intron 1 of 11) L1ME4b|LINE|L1 13557 NM_001318057 3426 Hs.312485 NM_000204 ENSG00000205403 CFI AHUS3|ARMD13|C3BINA|C3b-INA|FI|IF|KAF complement factor I protein-coding 187.5-12 chr12 80549417 80549776 + 0.75 NA exon (NM_001145026, exon 25 of 45) exon (NM_001145026, exon 25 of 45) 105361 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 168.5-91 chr7 28001762 28002171 + 0.75 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -178491 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 220-4 chr12 46432819 46433177 + 0.75 NA intron (NR_125381, intron 2 of 2) intron (NR_125381, intron 2 of 2) 48891 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 251.25-3 chr10 19707362 19707761 + 0.75 NA intron (NM_001142308, intron 38 of 39) intron (NM_001142308, intron 38 of 39) 20989 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 256.75-16 chr21 30025277 30025935 + 0.75 NA Intergenic Arthur1|DNA|hAT-Tip100 -85554 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 180-41 chr22 32229476 32229904 + 0.75 NA intron (NM_014227, intron 10 of 14) L1MA1|LINE|L1 24575 NR_149072 110806273 Hs.382171 NR_149072 ENSG00000242082 SLC5A4-AS1 - SLC5A4 antisense RNA 1 ncRNA 329.25 chr1 224915212 224915814 + 0.75 NA Intergenic LTR49-int|LTR|ERV1 -14141 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 243.75-12 chr3 132146069 132146588 + 0.75 NA Intergenic MLT1J1|LTR|ERVL-MaLR -106722 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 146.75-41 chr18 11292714 11293076 + 0.75 NA Intergenic LTR24B|LTR|ERV1 -144133 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 190.25-17 chr2 68057104 68057370 + 0.75 NA intron (NM_001190263, intron 1 of 5) AluSq|SINE|Alu 5767 NM_001190265 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 273.75-7 chr2 189988443 189988861 + 0.75 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 74077 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 215.25-5 chr1 238182327 238182838 + 0.75 NA Intergenic L1M4a1|LINE|L1 -291660 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 148.25-67 chr4 185854495 185854922 + 0.75 NA intron (NM_021069, intron 1 of 20) intron (NM_021069, intron 1 of 20) -42452 NM_001145670 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 211.25-39 chr6 75198281 75198713 + 0.75 NA intron (NM_004370, intron 2 of 65) intron (NM_004370, intron 2 of 65) 7556 NM_004370 1303 Hs.101302 NM_004370 ENSG00000111799 COL12A1 BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|EDSMYP|UCMD2 collagen type XII alpha 1 chain protein-coding 194-43 chr5 91081621 91082085 + 0.75 NA intron (NR_003149, intron 86 of 89) intron (NR_003149, intron 86 of 89) 232549 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 217.25-25 chr2 143506176 143506516 + 0.75 NA intron (NM_018460, intron 9 of 13) intron (NM_018460, intron 9 of 13) 376927 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 165-63 chr4 160319037 160319314 + 0.75 NA Intergenic ERVL-B4-int|LTR|ERVL -541391 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 147-38 chr18 67828903 67829317 + 0.75 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) -14288 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 164.5-29 chr19 38973432 38973673 + 0.75 NA intron (NR_104026, intron 1 of 5) intron (NR_104026, intron 1 of 5) 2190 NM_024907 115290 Hs.531770 NM_024907 ENSG00000269190 FBXO17 FBG4|FBX26|FBXO26|Fbx17 F-box protein 17 protein-coding 159.25-16 chr14 33032901 33033150 + 0.75 NA intron (NM_001165893, intron 1 of 10) intron (NM_001165893, intron 1 of 10) 94146 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 157.25-107 chr8 131941942 131942350 + 0.75 NA intron (NM_001323557, intron 2 of 22) intron (NM_001323557, intron 2 of 22) 25373 NM_001323557 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 158.25-10 chr10 10846688 10846969 + 0.75 NA intron (NM_001326328, intron 2 of 15) intron (NM_001326328, intron 2 of 15) 48103 NM_001326327 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 158.75-58 chr4 72264658 72264996 + 0.75 NA Intergenic Intergenic 225695 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 149.75-103 chr8 120990647 120990938 + 0.75 NA Intergenic Intergenic -178746 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 231.75-28 chr6 145535647 145536060 + 0.75 NA Intergenic Intergenic 151024 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 153.5-12 chr10 17215695 17215925 + 0.75 NA intron (NR_108061, intron 2 of 2) intron (NR_108061, intron 2 of 2) 11088 NR_108060 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 170-26 chr18 11436634 11436986 + 0.75 NA Intergenic L1MA4A|LINE|L1 -17668 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 176.5-43 chr2 167373986 167374321 + 0.75 NA Intergenic L1PA16|LINE|L1 186781 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 216-28 chr6 61959484 61960102 + 0.75 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 326432 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 220.75-14 chr18 27291467 27291999 + 0.75 NA Intergenic Intergenic 50923 NR_134589 105372038 Hs.722107 NR_134589 ENSG00000264151 LOC105372038 - uncharacterized LOC105372038 ncRNA 151.25-82 chr7 21375402 21375808 + 0.75 NA Intergenic MER103C|DNA|hAT-Charlie -52478 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 224.75-4 chr10 44841208 44841569 + 0.75 NA intron (NR_033842, intron 2 of 7) MSTC|LTR|ERVL-MaLR -69928 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 187.75-57 chr5 38000468 38000950 + 0.75 NA Intergenic Intergenic -24988 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 205-49 chr8 136338774 136339164 + 0.75 NA Intergenic HAL1|LINE|L1 -191829 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 289.75-19 chr8 92275685 92276195 + 0.75 NA Intergenic Intergenic -172555 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 266.25-6 chr2 66588214 66588635 + 0.75 NA intron (NR_110156, intron 1 of 5) L2c|LINE|L2 14394 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 246.75-19 chr8 120433705 120434180 + 0.75 NA intron (NM_014078, intron 2 of 6) intron (NM_014078, intron 2 of 6) 11208 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 154.75-23 chr14 51882329 51882722 + 0.75 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) 21913 NM_053064 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 213.5-9 chr10 86297088 86297452 + 0.75 NA intron (NM_017551, intron 2 of 15) L1M5|LINE|L1 -32482 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 153.5-113 chr8 114222876 114223282 + 0.75 NA Intergenic Intergenic -786140 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 207.5-32 chr4 81632160 81632607 + 0.75 NA Intergenic Intergenic -160476 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 156.75-89 chr7 2038038 2038405 + 0.75 NA intron (NM_001013837, intron 12 of 18) Tigger1|DNA|TcMar-Tigger 50831 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 184.5-73 chrX 38224090 38224357 + 0.75 NA Intergenic L3|LINE|CR1 -3299 NM_001170750 8406 Hs.15154 NM_006307 ENSG00000101955 SRPX DRS|ETX1|HEL-S-83p|SRPX1 sushi repeat containing protein X-linked protein-coding 147.75-15 chr10 41884307 41884554 + 0.75 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 483615 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 165-13 chr11 20959647 20959990 + 0.75 NA intron (NM_201551, intron 11 of 18) L1ME3D|LINE|L1 290232 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 327.75-2 chr11 9643131 9643699 + 0.75 NA Intergenic Intergenic -20662 NM_015055 23075 Hs.153026 NM_015055 ENSG00000133789 SWAP70 HSPC321|SWAP-70 switching B cell complex subunit SWAP70 protein-coding 297.25-12 chr8 126407835 126408521 + 0.75 NA Intergenic Intergenic 82683 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 175.5-53 chr20 13822373 13822623 + 0.75 NA TTS (NM_001352403) TTS (NM_001352403) 37470 NR_147982 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 149-69 chr3 164493122 164493390 + 0.75 NA Intergenic Intergenic -321700 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 174.75-64 chr7 122256992 122257278 + 0.75 NA Intergenic MER21A|LTR|ERVL -46523 NR_036484 154860 Hs.664204 NR_036484 ENSG00000230316 FEZF1-AS1 - FEZF1 antisense RNA 1 ncRNA 159.5-68 chr4 111630644 111630885 + 0.75 NA Intergenic Intergenic -514690 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 178.5-10 chr11 4909813 4910322 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR 2697 NM_001004749 119687 Hs.553560 NM_001004749 ENSG00000176895 OR51A7 OR11-27 olfactory receptor family 51 subfamily A member 7 protein-coding 190.5-8 chr10 53820026 53820566 + 0.75 NA TTS (NM_001142767) TTS (NM_001142767) -665934 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 146.5-55 chr2 105975274 105975582 + 0.75 NA Intergenic L2a|LINE|L2 -90260 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 177.5-59 chr8 118863853 118864312 + 0.75 NA Intergenic L1MC4|LINE|L1 87803 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 170.5-13 chr12 24579075 24579473 + 0.75 NA intron (NR_029451, intron 1 of 3) L1MCb|LINE|L1 4894 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 192-40 chr3 116372335 116372803 + 0.75 NA intron (NM_001318915, intron 1 of 8) L1MB3|LINE|L1 12545 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 237-13 chr6 61640793 61641390 + 0.75 NA intron (NR_146874, intron 13 of 13) MamRep1879|DNA|hAT-Tip100? 66961 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 151-78 chr5 162653841 162654254 + 0.75 NA Intergenic Intergenic 586405 NM_000816 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 196-35 chr4 46785804 46786079 + 0.75 NA intron (NM_130902, intron 2 of 2) MIRb|SINE|MIR 123304 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 240-12 chr2 47790361 47790836 + 0.75 NA intron (NM_001281494, intron 1 of 9) intron (NM_001281494, intron 1 of 9) 6643 NM_001281494 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 241-15 chr2 161203436 161204024 + 0.75 NA intron (NM_001199135, intron 3 of 7) intron (NM_001199135, intron 3 of 7) -41009 NR_110164 100996579 Hs.660929 NR_110163 ENSG00000227403 LINC01806 - long intergenic non-protein coding RNA 1806 ncRNA 237.5-31 chr8 80911221 80911673 + 0.75 NA Intergenic MER48|LTR|ERV1 -36666 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 167.25-71 chr6 123502973 123503205 + 0.75 NA 3' UTR (NM_001256021, exon 8 of 8) 3' UTR (NM_001256021, exon 8 of 8) 63485 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 233.5-11 chr2 71304386 71304977 + 0.75 NA Intergenic Intergenic -27074 NM_001252612 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 230.5-34 chr7 77956232 77956572 + 0.75 NA 3' UTR (NM_001127358, exon 18 of 18) 3' UTR (NM_001127358, exon 18 of 18) 116272 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 149-64 chr3 20382953 20383218 + 0.75 NA Intergenic MER57-int|LTR|ERV1 40617 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 156-99 chr9 71515091 71515404 + 0.75 NA Intergenic Intergenic -68276 NM_001366143 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 192.25-67 chrX 96548830 96549359 + 0.75 NA Intergenic Intergenic -135569 NM_007309 1730 Hs.226483 NM_006729 ENSG00000147202 DIAPH2 DIA|DIA2|DRF2|POF|POF2|POF2A diaphanous related formin 2 protein-coding 204.25-48 chr6 141423293 141423733 + 0.75 NA Intergenic L1ME3A|LINE|L1 665286 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 259.75-18 chr7 45277354 45277935 + 0.75 NA Intergenic L1MEc|LINE|L1 119853 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 158.5-9 chr10 83505403 83505842 + 0.75 NA Intergenic L1MEc|LINE|L1 171467 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 165.75-78 chr5 63865243 63865578 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger 96882 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 174.75-20 chr12 74613212 74613527 + 0.75 NA Intergenic Intergenic 75534 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 226.25-6 chr13 82349098 82349472 + 0.75 NA Intergenic L1MC3|LINE|L1 -1122302 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 149.25 chr1 24756514 24756875 + 0.75 NA intron (NM_013943, intron 1 of 5) intron (NM_013943, intron 1 of 5) 11247 NM_013943 25932 Hs.440544 NM_013943 ENSG00000169504 CLIC4 CLIC4L|H1|MTCLIC|huH1|p64H1 chloride intracellular channel 4 protein-coding 151.25-34 chr18 36979851 36980157 + 0.75 NA intron (NR_136303, intron 6 of 13) MLT1A1|LTR|ERVL-MaLR -56190 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 198-43 chr8 56187685 56188026 + 0.75 NA intron (NM_002655, intron 1 of 4) intron (NM_002655, intron 1 of 4) 23418 NM_001114634 5324 Hs.14968 NM_002655 ENSG00000181690 PLAG1 PSA|SGPA|ZNF912 PLAG1 zinc finger protein-coding 195-44 chr8 31456653 31457053 + 0.75 NA Intergenic Intergenic -182899 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 168.25-60 chr5 127237458 127237710 + 0.75 NA Intergenic Intergenic -53180 NM_001308121 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 160-17 chr13 94518344 94518637 + 0.75 NA intron (NM_001322186, intron 1 of 9) L2b|LINE|L2 30916 NM_001322186 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 278-3 chr2 5905776 5906305 + 0.75 NA Intergenic Intergenic -26647 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 152.5-7 chr10 9187918 9188243 + 0.75 NA Intergenic Intergenic -87533 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 208.75-19 chr2 188816849 188817341 + 0.75 NA Intergenic Intergenic -26972 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 257.5-20 chr7 18542057 18542464 + 0.75 NA intron (NM_001204147, intron 1 of 9) MIR|SINE|MIR 32990 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 156.75-66 chr3 109032812 109033134 + 0.75 NA intron (NM_014429, intron 15 of 27) intron (NM_014429, intron 15 of 27) -68483 NR_144461 100506506 Hs.278908 NR_144461 ENSG00000239314 MORC1-AS1 - MORC1 antisense RNA 1 ncRNA 151.25-74 chr5 55800640 55801021 + 0.75 NA intron (NM_024415, intron 18 of 21) intron (NM_024415, intron 18 of 21) 33945 NM_001166534 54514 Hs.223581 NM_019039 ENSG00000152670 DDX4 VASA DEAD-box helicase 4 protein-coding 170-16 chr13 40148571 40149022 + 0.75 NA Intergenic Intergenic -33013 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 228-16 chr2 209367768 209368305 + 0.75 NA Intergenic Intergenic -56011 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 233-12 chr14 55534655 55535321 + 0.75 NA Intergenic Intergenic 45104 NR_027123 100129075 Hs.633724 NR_027123 ENSG00000186615 KTN1-AS1 C14orf33|MYCLo-3 KTN1 antisense RNA 1 ncRNA 185-27 chr17 73033504 73033863 + 0.75 NA intron (NM_001352692, intron 3 of 9) intron (NM_001352692, intron 3 of 9) 59005 NM_139177 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 187-34 chr3 130598820 130599225 + 0.75 NA intron (NM_001102608, intron 18 of 35) MIRb|SINE|MIR 38688 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 192-44 chr3 190379123 190379529 + 0.75 NA Intergenic Intergenic -8546 NM_006580 10686 Hs.251391 NM_006580 ENSG00000113946 CLDN16 HOMG3|PCLN1 claudin 16 protein-coding 199.25-27 chr18 3507878 3508244 + 0.75 NA intron (NM_001242762, intron 8 of 9) intron (NM_001242762, intron 8 of 9) 41811 NR_110428 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 196-48 chr8 78501086 78501644 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR -14975 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 203.25-15 chr16 26398758 26399178 + 0.75 NA Intergenic HAL1b|LINE|L1 373731 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 197.5-27 chr18 46127034 46127451 + 0.75 NA intron (NM_138443, intron 8 of 8) AluSz|SINE|Alu 22857 NR_026978 115106 Hs.436617 NM_138443 ENSG00000152240 HAUS1 CCDC5|HEI-C|HEIC|HsT1461 HAUS augmin like complex subunit 1 protein-coding 180.25-23 chr17 62787328 62787781 + 0.75 NA intron (NM_001288780, intron 4 of 10) intron (NM_001288780, intron 4 of 10) 19086 NM_001100875 162333 Hs.665663 NM_152598 ENSG00000173838 MARCH10 MARCH-X|RNF190 membrane associated ring-CH-type finger 10 protein-coding 151.5-43 chr18 70487970 70488273 + 0.75 NA Intergenic AluJr|SINE|Alu -103530 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 252.75-24 chr4 164420183 164420697 + 0.75 NA Intergenic Intergenic -37185 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 180-48 chr4 43595506 43595850 + 0.75 NA Intergenic Intergenic -103135 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 187.75-19 chr14 54417003 54417480 + 0.75 NA intron (NM_001330173, intron 6 of 8) L1MB7|LINE|L1 20234 NM_005192 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 257.75-23 chr6 154569297 154569988 + 0.75 NA Intergenic MIRc|SINE|MIR -58957 NM_001368117 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 261-5 chr11 22655824 22656319 + 0.75 NA Intergenic Intergenic -10540 NM_001143830 2620 Hs.711297 NM_005256 ENSG00000148935 GAS2 GAS-2 growth arrest specific 2 protein-coding 160.25-77 chr8 125656890 125657195 + 0.75 NA Intergenic L2c|LINE|L2 224833 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 275.75-15 chr5 79929775 79930195 + 0.75 NA Intergenic L2a|LINE|L2 -6594 NR_131226 105616916 Hs.590325 NR_131226 ENSG00000250888 LINC01455 MDONA|TCONS_00009433 long intergenic non-protein coding RNA 1455 ncRNA 185.25-14 chr12 100654470 100654798 + 0.75 NA Intergenic Intergenic 61016 NM_001303131 283431 Hs.20575 NM_174942 ENSG00000139354 GAS2L3 G2L3 growth arrest specific 2 like 3 protein-coding 200-38 chr5 25089410 25090020 + 0.75 NA Intergenic Intergenic 100941 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 167.75-76 chr5 163180471 163180792 + 0.75 NA Intergenic HAL1|LINE|L1 -256940 NM_001364019 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 204.75-60 chr9 8536397 8536748 + 0.75 NA intron (NM_130392, intron 3 of 30) intron (NM_130392, intron 3 of 30) 197374 NM_130392 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 234.5-28 chr8 127881236 127881798 + 0.75 NA intron (NR_003367, intron 1 of 8) AluSq2|SINE|Alu 67206 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 172.75-29 chr16 73875892 73876344 + 0.75 NA Intergenic Intergenic 339403 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 147-5 chr1 184254179 184254533 + 0.75 NA Intergenic Intergenic -132673 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 192.5-56 chr7 54356999 54357369 + 0.75 NA Intergenic Intergenic 26487 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 285-3 chr2 214246470 214247276 + 0.75 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -164181 NR_159945 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 192.75-31 chr2 164130239 164130652 + 0.75 NA Intergenic Intergenic -394437 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 186.5-5 chr1 73409325 73409650 + 0.75 NA Intergenic L1MC3|LINE|L1 103317 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 218.5-20 chr21 19692482 19692933 + 0.75 NA Intergenic HAL1M8|LINE|L1 207048 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 255.75-8 chr2 115209500 115209896 + 0.75 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) 47543 NM_001321909 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 173-32 chr14 81268560 81268924 + 0.75 NA intron (NM_001366850, intron 7 of 7) L2c|LINE|L2 -47352 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 188-48 chr5 32138636 32138983 + 0.75 NA intron (NM_022130, intron 2 of 3) MER33|DNA|hAT-Charlie 35510 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 164.5-90 chr8 10153154 10153499 + 0.75 NA intron (NM_001199729, intron 2 of 6) intron (NM_001199729, intron 2 of 6) 57675 NM_001199729 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 336.5-7 chr5 91016589 91017404 + 0.75 NA intron (NR_003149, intron 85 of 89) intron (NR_003149, intron 85 of 89) 297406 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 289.75-14 chr3 145888244 145888925 + 0.75 NA Intergenic MER90|LTR|ERV1 180601 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 146.5 chr1 54133497 54133714 + 0.75 NA intron (NM_001353655, intron 6 of 6) MIRb|SINE|MIR 19576 NM_001353655 200008 NM_201546 ENSG00000157211 CDCP2 - CUB domain containing protein 2 protein-coding 225-6 chr13 43913901 43914320 + 0.75 NA Intergenic Intergenic 34206 NM_001350646 144811 Hs.210586 NM_153218 ENSG00000179630 LACC1 C13orf31|FAMIN laccase domain containing 1 protein-coding 165-54 chr3 4623735 4624072 + 0.75 NA intron (NM_001168272, intron 4 of 60) intron (NM_001168272, intron 4 of 60) 127687 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 155.75-52 chr2 39992984 39993298 + 0.75 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 75507 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 151.5-90 chr7 83035451 83035874 + 0.75 NA intron (NM_033026, intron 3 of 24) LTR37B|LTR|ERV1 127222 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 270.25-14 chr3 15683663 15684135 + 0.75 NA intron (NM_001349280, intron 20 of 26) intron (NM_001349280, intron 20 of 26) 13472 NR_036085 100422990 NR_036085 ENSG00000264354 MIR3134 - microRNA 3134 ncRNA 179.75-28 chr2 161683809 161684378 + 0.75 NA intron (NM_001354451, intron 1 of 25) L1MB3|LINE|L1 59677 NM_001354449 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 160.5-36 chr15 62976159 62976421 + 0.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -66457 NM_001301244 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 169-25 chr17 55970994 55971372 + 0.75 NA Intergenic Intergenic -182292 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 181-57 chr8 139409082 139409555 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 293805 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 172-72 chr6 2262437 2262869 + 0.75 NA intron (NR_046229, intron 2 of 6) L1MC1|LINE|L1 16900 NR_046229 100508120 Hs.188825 NR_046229 GMDS-DT GMDS-AS1 GMDS divergent transcript ncRNA 149.25-57 chr22 25576575 25576900 + 0.75 NA intron (NM_001362778, intron 1 of 19) intron (NM_001362778, intron 1 of 19) 12062 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 150.5-89 chr4 185205469 185205860 + 0.75 NA intron (NM_001317781, intron 1 of 18) AluSx|SINE|Alu 1427 NM_001317781 83891 Hs.369091 NM_031953 ENSG00000109762 SNX25 MSTP043|SBBI31 sorting nexin 25 protein-coding 232.75-23 chr3 175418968 175419532 + 0.75 NA intron (NM_207015, intron 5 of 13) intron (NM_207015, intron 5 of 13) 49710 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 168.75-86 chr6 67438766 67439258 + 0.75 NA Intergenic Intergenic -616339 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 150.75-87 chr6 141781863 141782295 + 0.75 NA Intergenic L1ME2|LINE|L1 306720 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 296.5-20 chr9 31599575 31600340 + 0.75 NA Intergenic Intergenic -218467 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 157-39 chr16 64052073 64052461 + 0.75 NA Intergenic L1M3f|LINE|L1 1069796 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 267.25-5 chr2 117730103 117730551 + 0.75 NA Intergenic L1M1|LINE|L1 -84364 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 175.5-90 chr7 89291920 89292258 + 0.75 NA intron (NM_181646, intron 2 of 3) L1M1|LINE|L1 -496352 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 170-20 chr15 76378627 76378920 + 0.75 NA intron (NR_148227, intron 29 of 32) MLT1G|LTR|ERVL-MaLR 42000 NM_145805 64843 Hs.444677 NM_145805 ENSG00000159556 ISL2 - ISL LIM homeobox 2 protein-coding 214.75-24 chr2 98305706 98306209 + 0.75 NA intron (NM_001345864, intron 20 of 21) intron (NM_001345864, intron 20 of 21) -40198 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 182.5-42 chr3 67806856 67807283 + 0.75 NA intron (NR_109992, intron 3 of 6) intron (NR_109992, intron 3 of 6) 152372 NR_109993 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 174.5-15 chr10 94471500 94471905 + 0.75 NA intron (NM_015188, intron 2 of 12) intron (NM_015188, intron 2 of 12) 69161 NM_015188 23232 Hs.500598 NM_015188 ENSG00000108239 TBC1D12 - TBC1 domain family member 12 protein-coding 264-10 chr8 105805462 105806037 + 0.75 NA intron (NR_125796, intron 2 of 7) L2c|LINE|L2 254754 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 170.25-70 chr7 52304261 52304606 + 0.75 NA Intergenic L1MD2|LINE|L1 -731200 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 239-4 chr12 111464458 111464995 + 0.75 NA intron (NR_132311, intron 19 of 23) intron (NR_132311, intron 19 of 23) 29864 NM_001291424 10019 Hs.506784 NM_005475 ENSG00000111252 SH2B3 IDDM20|LNK SH2B adaptor protein 3 protein-coding 231.25-15 chr14 75761268 75761752 + 0.75 NA intron (NM_015072, intron 18 of 31) L1ME2z|LINE|L1 100264 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 219.25-18 chr17 70033771 70034219 + 0.75 NA Intergenic Intergenic -17276 NR_104130 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 243.5-23 chr6 64992716 64993071 + 0.75 NA intron (NM_001292009, intron 14 of 43) intron (NM_001292009, intron 14 of 43) -308525 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 274-9 chr4 113810895 113811367 + 0.75 NA Intergenic Intergenic -49204 NM_172114 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 265.25-5 chr11 57352883 57353587 + 0.75 NA intron (NM_002559, intron 8 of 11) intron (NM_002559, intron 8 of 11) 14883 NM_002559 5024 Hs.146738 NM_002559 ENSG00000109991 P2RX3 P2X3 purinergic receptor P2X 3 protein-coding 245-19 chr6 63064920 63065355 + 0.75 NA Intergenic Intergenic 254840 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 218.75-29 chr9 135103881 135104411 + 0.75 NA intron (NM_001282611, intron 4 of 5) intron (NM_001282611, intron 4 of 5) 16478 NM_001282611 10439 Hs.522484 NM_006334 ENSG00000130558 OLFM1 AMY|NOE1|NOELIN1|OlfA olfactomedin 1 protein-coding 222.5-15 chr14 32603585 32604028 + 0.75 NA intron (NM_004274, intron 7 of 13) L1ME4a|LINE|L1 274508 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 205.25-8 chr11 29681131 29681471 + 0.75 NA Intergenic Intergenic 62499 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 158.25-70 chr3 174077083 174077408 + 0.75 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -156449 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 213-7 chr12 61607736 61608040 + 0.75 NA Intergenic L1MA7|LINE|L1 584951 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 199.25-22 chr16 72155271 72155736 + 0.75 NA intron (NM_031293, intron 3 of 20) L2c|LINE|L2 16652 NM_031293 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 222.75-24 chr3 78908145 78908565 + 0.75 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 111104 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 247.5-26 chr4 72004535 72005021 + 0.75 NA Intergenic MER101-int|LTR|ERV1 -27026 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 184-46 chr6 40338630 40339190 + 0.75 NA Intergenic Intergenic 17096 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 254.75-20 chr6 114270695 114271167 + 0.75 NA intron (NR_125845, intron 9 of 9) intron (NR_125845, intron 9 of 9) -208054 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 201.25-20 chr2 13110234 13110621 + 0.75 NA Intergenic Intergenic -103414 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 300 chr1 81641217 81641798 + 0.75 NA intron (NM_001366008, intron 3 of 26) L1MCa|LINE|L1 -58263 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 152.5-86 chr5 25689033 25689446 + 0.75 NA Intergenic Intergenic 498286 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 157.25-102 chr8 82742036 82742393 + 0.75 NA Intergenic LTR16C|LTR|ERVL -169890 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 163-18 chr11 68732430 68732660 + 0.75 NA intron (NM_004923, intron 6 of 9) intron (NM_004923, intron 6 of 9) 18975 NM_004923 9633 Hs.145932 NM_004923 ENSG00000132749 TESMIN CXCDC2|MTL5|MTLT testis expressed metallothionein like protein protein-coding 163.75-28 chr18 52645444 52645715 + 0.75 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 305382 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 166-50 chr3 89498722 89499097 + 0.75 NA Intergenic Intergenic 391288 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 196.5-20 chr17 73663754 73664135 + 0.75 NA Intergenic LTR33A_|LTR|ERVL -19499 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 232-18 chr22 49173041 49173745 + 0.75 NA Intergenic L1ME3A|LINE|L1 306623 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 209.25-24 chr2 77315368 77315736 + 0.75 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 206824 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 207.25-20 chr14 60774023 60774546 + 0.75 NA intron (NM_001177963, intron 1 of 6) L2a|LINE|L2 39523 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 195.5-4 chr1 236860461 236860897 + 0.75 NA intron (NM_001291939, intron 19 of 31) intron (NM_001291939, intron 19 of 31) 65387 NM_001291940 4548 Hs.498187 NM_000254 ENSG00000116984 MTR HMAG|MS|cblG 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 176.5-5 chr1 166968820 166969293 + 0.75 NA intron (NM_199351, intron 1 of 9) MIRb|SINE|MIR 6484 NM_199351 387597 Hs.444835 NM_199351 ENSG00000143195 ILDR2 C1orf32|dJ782G3.1 immunoglobulin like domain containing receptor 2 protein-coding 199.5-12 chr14 53883785 53884244 + 0.75 NA Intergenic AluJr4|SINE|Alu 64470 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 172.75-75 chr9 107293316 107293640 + 0.75 NA intron (NM_001244713, intron 1 of 9) intron (NM_001244713, intron 1 of 9) 8709 NM_001244713 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 150-55 chr22 47982549 47982772 + 0.75 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 -291704 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 157.25-93 chr7 125968859 125969253 + 0.75 NA Intergenic Intergenic -704765 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 297.5-4 chr10 68973937 68974490 + 0.75 NA intron (NM_001256910, intron 10 of 14) L1MC3|LINE|L1 -14590 NM_015634 26128 Hs.279580 NM_015634 ENSG00000198954 KIF1BP KBP|KIAA1279|TTC20 KIF1 binding protein protein-coding 239-6 chr13 107010279 107010921 + 0.75 NA Intergenic Intergenic 310363 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 281.5-23 chr5 43751719 43752174 + 0.75 NA Intergenic AluYc|SINE|Alu -148716 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 187-52 chr6 20666950 20667369 + 0.75 NA intron (NM_017774, intron 5 of 15) intron (NM_017774, intron 5 of 15) 132702 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 191.75-61 chr7 54676246 54676520 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger 82828 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 224.75-43 chr7 158912262 158912715 + 0.75 NA intron (NM_001350918, intron 14 of 26) AluJr|SINE|Alu 55930 NM_001350915 55112 Hs.389945 NM_018051 ENSG00000126870 WDR60 FAP163|SRPS6|SRTD8 WD repeat domain 60 protein-coding 171-65 chr7 84479395 84479928 + 0.75 NA Intergenic L2c|LINE|L2 -52815 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 150-47 chr20 13211877 13212142 + 0.75 NA Intergenic Intergenic -9265 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 152.75-39 chr18 6439089 6439358 + 0.75 NA Intergenic L1MEi|LINE|L1 -23964 NM_001365765 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 154.75-65 chr3 178986253 178986539 + 0.75 NA Intergenic MER65D|LTR|ERV1 85413 NM_152240 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 222-25 chr7 90708566 90709164 + 0.75 NA promoter-TSS (NM_001287137) promoter-TSS (NM_001287137) -533 NM_012395 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 228-29 chr7 69022088 69022474 + 0.75 NA Intergenic L1ME1|LINE|L1 575343 NR_148926 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 239.5-34 chr6 74554658 74555050 + 0.75 NA intron (NR_110856, intron 2 of 3) L1M1|LINE|L1 485403 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 243.5 chr1 19065602 19066165 + 0.75 NA Intergenic Intergenic -109207 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 159.25-68 chr6 57245587 57246012 + 0.75 NA Intergenic Intergenic 17547 NR_109774 100506188 Hs.485640 NR_109774 LOC100506188 - uncharacterized LOC100506188 ncRNA 162.5-89 chr8 120830150 120830585 + 0.75 NA Intergenic L1ME3G|LINE|L1 -18321 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 145.75-2 chr1 65511874 65512211 + 0.75 NA intron (NM_001003679, intron 2 of 19) MSTA|LTR|ERVL-MaLR -13609 NM_001198687 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 264.25-5 chr13 39894590 39895134 + 0.75 NA Intergenic Intergenic -230727 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 209.25-6 chr11 79609505 79610050 + 0.75 NA Intergenic L2c|LINE|L2 -168747 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 163.25-47 chr22 24581899 24582233 + 0.75 NA Intergenic Intergenic -1684 NM_013430 2678 Hs.595809 NM_005265 ENSG00000100031 GGT1 CD224|D22S672|D22S732|GGT|GGT 1|GGTD|GTG gamma-glutamyltransferase 1 protein-coding 146.25-46 chr2 201549952 201550328 + 0.75 NA intron (NM_001168221, intron 9 of 15) intron (NM_001168221, intron 9 of 15) 69038 NM_152525 151254 Hs.335788 NM_152525 ENSG00000155754 C2CD6 ALS2CR11 C2 calcium dependent domain containing 6 protein-coding 198.75-32 chr22 26329753 26330255 + 0.75 NA intron (NM_001184776, intron 9 of 14) intron (NM_001184776, intron 9 of 14) -99256 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 168.25-73 chr7 6032446 6032712 + 0.75 NA intron (NM_001271700, intron 1 of 2) intron (NM_001271700, intron 1 of 2) 1203 NM_001271700 100310846 Hs.744468 NM_001271700 ENSG00000157999 ANKRD61 - ankyrin repeat domain 61 protein-coding 172.75-62 chr6 155481702 155482010 + 0.75 NA Intergenic L2|LINE|L2 -26017 NM_015718 50508 Hs.247776 NM_015718 ENSG00000074771 NOX3 GP91-3|MOX-2 NADPH oxidase 3 protein-coding 210.25-5 chr10 10275140 10275718 + 0.75 NA Intergenic Intergenic 186920 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 150.5-108 chr6 143455944 143456279 + 0.75 NA intron (NM_003630, intron 1 of 11) MIR3|SINE|MIR 5306 NM_003630 8504 Hs.7277 NM_003630 ENSG00000034693 PEX3 PBD10A|PBD10B|TRG18 peroxisomal biogenesis factor 3 protein-coding 195-14 chr13 38125313 38125680 + 0.75 NA intron (NR_047500, intron 1 of 5) intron (NR_047500, intron 1 of 5) 17736 NR_047500 100874188 Hs.569249 NR_047500 ENSG00000223685 LINC00571 - long intergenic non-protein coding RNA 571 ncRNA 160.25-23 chr14 63005417 63005725 + 0.75 NA intron (NM_139318, intron 3 of 10) intron (NM_139318, intron 3 of 10) 39887 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 208.75-36 chr7 42314723 42315200 + 0.75 NA Intergenic Intergenic -77752 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 238.5-12 chr12 1604244 1604736 + 0.75 NA Intergenic L1MA5|LINE|L1 -9909 NM_152441 144699 Hs.367956 NM_152441 ENSG00000171823 FBXL14 Fbl14 F-box and leucine rich repeat protein 14 protein-coding 310.75-9 chr8 91491004 91491793 + 0.75 NA Intergenic Intergenic 242079 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 173.5-86 chr8 63898853 63899146 + 0.75 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 129569 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 188-50 chr5 109616765 109617238 + 0.75 NA Intergenic Intergenic -72365 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 327.75-6 chr4 111543384 111543836 + 0.75 NA Intergenic Intergenic -601844 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 186.75-7 chr1 240553394 240553833 + 0.75 NA intron (NM_022469, intron 1 of 1) intron (NM_022469, intron 1 of 1) 58542 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 160.75-43 chr16 55121712 55121946 + 0.75 NA Intergenic Intergenic 190630 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 225-24 chr7 42300541 42301023 + 0.75 NA Intergenic L1ME3B|LINE|L1 -63573 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 275.75-11 chr3 151935537 151936115 + 0.75 NA Intergenic Intergenic -7651 NR_110203 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 160-69 chr5 123520320 123520791 + 0.75 NA intron (NM_001364148, intron 1 of 8) intron (NM_001364148, intron 1 of 8) 8378 NM_001364148 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 241-9 chr13 76303741 76304449 + 0.75 NA Intergenic Intergenic -368963 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 220.25-40 chr7 19727960 19728372 + 0.75 NA intron (NM_152774, intron 2 of 3) (CTTC)n|Simple_repeat|Simple_repeat -19129 NM_001002926 221830 Hs.353035 NM_001002926 ENSG00000105849 TWISTNB - TWIST neighbor protein-coding 151.25-84 chr7 45205559 45205905 + 0.75 NA Intergenic L1M4b|LINE|L1 47941 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 246.25-3 chr1 176768324 176769000 + 0.75 NA intron (NM_020318, intron 15 of 22) intron (NM_020318, intron 15 of 22) 260783 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 154.25-68 chr6 47794467 47794930 + 0.75 NA intron (NR_033806, intron 3 of 6) intron (NR_033806, intron 3 of 6) 7630 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 179.5-46 chr20 54828640 54829187 + 0.75 NA Intergenic Intergenic 353320 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 201.25-7 chr10 107018416 107018997 + 0.75 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 146000 NM_001206570 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 154.75-47 chr2 155017085 155017397 + 0.75 NA Intergenic L1MA5A|LINE|L1 318546 NM_002239 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 200.5-14 chr11 99317852 99318363 + 0.75 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) -238038 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 212.5-14 chr15 47266259 47266768 + 0.75 NA intron (NM_001198999, intron 1 of 19) L1M4b|LINE|L1 82424 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 166.5-11 chr12 61066672 61067115 + 0.75 NA Intergenic Intergenic 1125946 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 216-20 chr16 82865278 82865763 + 0.75 NA intron (NM_001220490, intron 2 of 12) THE1C-int|LTR|ERVL-MaLR 92201 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 224.75-22 chr3 89040522 89041116 + 0.75 NA Intergenic L1MB8|LINE|L1 -66802 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 191.75-38 chr21 30757162 30757619 + 0.75 NA Intergenic Intergenic -1962 NM_181619 337977 Hs.567837 NM_181619 ENSG00000187005 KRTAP21-1 KAP21.1 keratin associated protein 21-1 protein-coding 209.75-43 chr9 9467671 9468173 + 0.75 NA intron (NM_002839, intron 8 of 45) L1M5|LINE|L1 -331470 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 206.75-41 chr4 166785466 166785876 + 0.75 NA intron (NM_001204356, intron 6 of 9) intron (NM_001204356, intron 6 of 9) 448755 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 172.25-29 chr19 50012387 50012655 + 0.75 NA intron (NM_016440, intron 3 of 14) L2b|LINE|L2 12851 NM_001308420 51231 Hs.443330 NM_016440 ENSG00000105053 VRK3 - VRK serine/threonine kinase 3 protein-coding 180-13 chr12 72462363 72462782 + 0.75 NA intron (NM_013381, intron 3 of 18) intron (NM_013381, intron 3 of 18) -189063 NR_026836 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 167.75-15 chr11 125845744 125846091 + 0.75 NA Intergenic L1PA10|LINE|L1 12601 NM_001144874 399968 Hs.436215 NM_001144874 ENSG00000237353 PATE4 PATE-B prostate and testis expressed 4 protein-coding 200-12 chr11 97811594 97811996 + 0.75 NA Intergenic MIRb|SINE|MIR -1209154 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 271.5-7 chr17 60954792 60955352 + 0.75 NA intron (NM_001330413, intron 14 of 25) L2c|LINE|L2 277221 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 203.5-54 chr4 134108184 134108793 + 0.75 NA Intergenic Intergenic 93301 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 268.25-20 chr5 125963321 125963895 + 0.75 NA Intergenic Intergenic -215969 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 303-2 chr1 194165305 194166031 + 0.75 NA Intergenic Intergenic 860923 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 189 chr1 49891519 49891804 + 0.75 NA intron (NM_001323575, intron 1 of 12) L2c|LINE|L2 132293 NM_001323575 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 186.25-4 chr10 56353799 56354208 + 0.75 NA Intergenic Intergenic 7256 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 252.75-15 chr2 64794651 64795322 + 0.75 NA Intergenic Intergenic 68645 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 251.25-26 chr5 132705792 132706231 + 0.75 NA intron (NM_007054, intron 9 of 16) intron (NM_007054, intron 9 of 16) -23382 NR_134248 105379176 Hs.73917 NR_134248 LOC105379176 - uncharacterized LOC105379176 ncRNA 199.75-13 chr12 28605549 28605871 + 0.75 NA Intergenic MIRb|SINE|MIR -414972 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 158.25-118 chr9 102520259 102520677 + 0.75 NA intron (NR_103830, intron 1 of 4) intron (NR_103830, intron 1 of 4) 831 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 156.5-23 chr10 101547539 101547870 + 0.75 NA intron (NM_001256856, intron 12 of 13) intron (NM_001256856, intron 12 of 13) 40553 NM_001174084 27343 Hs.523230 NM_013274 ENSG00000166169 POLL BETAN|POLKAPPA DNA polymerase lambda protein-coding 193.5-54 chr4 91821563 91822197 + 0.75 NA Intergenic THE1A|LTR|ERVL-MaLR 455422 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 179-42 chr4 31736204 31736602 + 0.75 NA Intergenic Intergenic 229859 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 229-13 chr20 7291934 7292356 + 0.75 NA Intergenic MER33|DNA|hAT-Charlie 15287 NR_135005 101929288 Hs.738005 NR_135005 ENSG00000261249 LINC01751 - long intergenic non-protein coding RNA 1751 ncRNA 175.75-11 chr12 44233535 44233990 + 0.75 NA intron (NM_001286213, intron 4 of 6) L1ME3F|LINE|L1 397681 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 274.5-9 chr14 98664220 98664900 + 0.75 NA Intergenic MER46C|DNA|TcMar-Tigger -47053 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 175.5-58 chr3 65083157 65083546 + 0.75 NA Intergenic Intergenic -395351 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 264.75-22 chr8 51310183 51310611 + 0.75 NA Intergenic L1M4|LINE|L1 499048 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 210-14 chr15 73645595 73645964 + 0.75 NA Intergenic L1MEc|LINE|L1 -12390 NM_012428 27020 Hs.744867 NM_012428 ENSG00000156642 NPTN GP55|GP65|SDFR1|SDR1|np55|np65 neuroplastin protein-coding 255.25-8 chr14 63394647 63395097 + 0.75 NA intron (NR_104104, intron 6 of 12) intron (NR_104104, intron 6 of 12) -75937 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 158.25-44 chr16 66260040 66260289 + 0.75 NA Intergenic Intergenic -106527 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 322-3 chr9 136362203 136363034 + 0.75 NA intron (NR_073565, intron 2 of 2) intron (NR_073565, intron 2 of 2) 1126 NR_073565 728489 Hs.528581 NM_001080849 ENSG00000213221 DNLZ C9orf151|HEP|HEP1|TIMM15|ZIM17|bA413M3.2 DNL-type zinc finger protein-coding 202.5-21 chr15 98509913 98510322 + 0.75 NA intron (NM_182562, intron 2 of 6) L1MB7|LINE|L1 4219 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 226-18 chr3 178035058 178035675 + 0.75 NA Intergenic L1MA5A|LINE|L1 218501 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 182.5-43 chr3 176191066 176191551 + 0.75 NA Intergenic Intergenic -53243 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 165.5-45 chr2 45377022 45377329 + 0.75 NA Intergenic MER2|DNA|TcMar-Tigger -122234 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 154.25-24 chr12 22054772 22055056 + 0.75 NA intron (NR_135117, intron 1 of 6) L1PA15|LINE|L1 8696 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 191.5-13 chr11 97986135 97986538 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR -1034613 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 182.25-54 chr7 40523848 40524135 + 0.75 NA intron (NM_001193312, intron 11 of 12) L1M5|LINE|L1 389015 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 161-81 chr7 78364297 78364692 + 0.75 NA intron (NM_001301128, intron 7 of 20) intron (NM_001301128, intron 7 of 20) 17252 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 315.75-6 chr8 37730861 37731439 + 0.75 NA intron (NR_125820, intron 2 of 2) AluSq2|SINE|Alu -5484 NM_001003790 11160 Hs.669261 NM_007175 ENSG00000147475 ERLIN2 C8orf2|Erlin-2|NET32|SPFH2|SPG18 ER lipid raft associated 2 protein-coding 151.75-100 chr7 79269738 79269987 + 0.75 NA intron (NM_001301128, intron 1 of 20) LTR8B|LTR|ERV1 -183095 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 167-20 chr14 44442934 44443225 + 0.75 NA Intergenic L1MEf|LINE|L1 64204 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 286.25 chr10 57768434 57769196 + 0.75 NA Intergenic L1MC1|LINE|L1 -464256 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 232.75-3 chr10 54349571 54350087 + 0.75 NA intron (NM_001354411, intron 5 of 34) intron (NM_001354411, intron 5 of 34) -136401 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 167.5-48 chr2 212742350 212742671 + 0.75 NA Intergenic MER47A|DNA|TcMar-Tigger -52821 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 154-85 chr5 54628723 54628982 + 0.75 NA Intergenic Intergenic 74472 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 290.25-11 chr8 86651852 86652513 + 0.75 NA intron (NM_019098, intron 7 of 17) Tigger3b|DNA|TcMar-Tigger 91493 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 146.75-114 chr7 140191205 140191499 + 0.75 NA Intergenic HAL1|LINE|L1 14091 NR_024451 100134229 Hs.634333 NR_024451 ENSG00000260231 KDM7A-DT JHDM1D-AS1 KDM7A divergent transcript ncRNA 185.75-91 chr9 88771642 88772051 + 0.75 NA Intergenic L1MC3|LINE|L1 -25941 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 172.75-65 chr7 145809319 145809787 + 0.75 NA Intergenic Intergenic -964718 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 162.25-85 chr7 32210285 32210683 + 0.75 NA intron (NM_001322059, intron 1 of 17) intron (NM_001322059, intron 1 of 17) 88844 NM_001191058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 224-27 chr4 181399309 181399646 + 0.75 NA Intergenic MIR3|SINE|MIR -134448 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 409 chr14 46319299 46320043 + 0.75 NA intron (NR_102702, intron 3 of 3) (AT)n|Simple_repeat|Simple_repeat -151688 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 197.25 chr1 51182493 51182853 + 0.75 NA Intergenic Intergenic 52423 NR_147076 105378716 NR_147076 ENSG00000203356 LINC01562 - long intergenic non-protein coding RNA 1562 ncRNA 156.5-53 chr2 177033592 177033843 + 0.75 NA Intergenic Intergenic 178694 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 166.5-77 chr6 112998897 112999159 + 0.75 NA Intergenic Intergenic 434419 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 283-5 chr2 24684973 24685408 + 0.75 NA intron (NM_001362950, intron 8 of 23) intron (NM_001362950, intron 8 of 23) 100713 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 335.75-5 chr5 107568421 107569071 + 0.75 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 102191 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 207.75-40 chr6 55500846 55501306 + 0.75 NA intron (NM_001287741, intron 4 of 7) intron (NM_001287741, intron 4 of 7) 78138 NM_001287753 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 149.25-111 chr8 101581360 101581683 + 0.75 NA intron (NM_024915, intron 7 of 15) intron (NM_024915, intron 7 of 15) 89082 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 183.5-53 chr4 76555661 76556130 + 0.75 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) -17673 NR_039654 100616299 NR_039654 ENSG00000263445 MIR4450 mir-4450 microRNA 4450 ncRNA 309.5-7 chr8 46287131 46287678 + 0.75 NA Intergenic GSAT|Satellite|centr 330239 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 185.25-26 chr15 57476379 57476869 + 0.75 NA intron (NM_032866, intron 8 of 18) intron (NM_032866, intron 8 of 18) 100119 NM_032866 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 176.25-40 chr2 190830802 190831154 + 0.75 NA Intergenic Intergenic -49843 NM_014905 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 153.25-103 chr6 108220317 108220574 + 0.75 NA intron (NM_152827, intron 1 of 2) Tigger3|DNA|TcMar-Tigger 40595 NM_152827 8724 Hs.12102 NM_003795 ENSG00000112335 SNX3 Grd19|MCOPS8|SDP3 sorting nexin 3 protein-coding 187.5-72 chr8 136604327 136604638 + 0.75 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 73684 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 212.25-45 chr7 126688785 126689136 + 0.75 NA intron (NM_001371085, intron 7 of 10) LTR105_Mam|LTR|ERVL 369224 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 234.75-15 chr2 147751811 147752353 + 0.75 NA Intergenic Intergenic -92435 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 146-12 chr10 130185227 130185530 + 0.75 NA Intergenic MER21A|LTR|ERVL 48969 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 215-9 chr18 8713424 8714000 + 0.75 NA Intergenic Intergenic -3669 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 151-108 chr9 966156 966433 + 0.75 NA intron (NM_001363767, intron 4 of 4) intron (NM_001363767, intron 4 of 4) -10361 NM_021240 58524 Hs.189174 NM_021240 ENSG00000064218 DMRT3 DMRTA3 doublesex and mab-3 related transcription factor 3 protein-coding 153-25 chr15 99990309 99990589 + 0.75 NA intron (NM_139057, intron 20 of 21) intron (NM_139057, intron 20 of 21) 183426 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 205.5-13 chr14 59842250 59842607 + 0.75 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 28348 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 238.5-25 chr4 30406125 30406757 + 0.75 NA Intergenic L1M2|LINE|L1 -313928 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 160.75-40 chr15 61366708 61366937 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL -137520 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 203-37 chr5 93515460 93515895 + 0.75 NA intron (NR_109825, intron 5 of 8) intron (NR_109825, intron 5 of 8) 55666 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 326.75-2 chr8 91230903 91231793 + 0.75 NA intron (NM_001282357, intron 2 of 18) intron (NM_001282357, intron 2 of 18) -17971 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 206.25-19 chr2 123600057 123600618 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR 424837 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 183.25-63 chr5 66119566 66119969 + 0.75 NA Intergenic Intergenic -24533 NM_001323534 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 216.75-7 chr15 68902338 68902754 + 0.75 NA Intergenic Intergenic -27954 NR_033672 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 301.75-13 chr8 57388131 57388781 + 0.75 NA Intergenic Intergenic 44669 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 271.5-16 chr6 132172702 132173287 + 0.75 NA Intergenic LTR106_Mam|LTR|LTR 39016 NR_038981 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 199-21 chr3 384644 385174 + 0.75 NA intron (NM_001253388, intron 17 of 24) intron (NM_001253388, intron 17 of 24) 886 NR_110739 101927193 Hs.677744 NR_110739 ENSG00000234661 CHL1-AS1 - CHL1 antisense RNA 1 ncRNA 162-85 chr9 87657951 87658251 + 0.75 NA exon (NM_001288731, exon 18 of 26) exon (NM_001288731, exon 18 of 26) -68018 NM_001257973 1514 Hs.731507 NM_001912 ENSG00000135047 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 185.25-78 chr8 105946533 105946997 + 0.75 NA intron (NR_125797, intron 1 of 4) L1MEd|LINE|L1 113738 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 165.25-17 chr17 52810615 52810889 + 0.75 NA Intergenic L1MA8|LINE|L1 -51369 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 192-17 chr14 68148824 68149289 + 0.75 NA intron (NM_133509, intron 7 of 10) L1MEc|LINE|L1 325464 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 194-46 chr6 43083214 43083748 + 0.75 NA intron (NM_001270398, intron 1 of 19) intron (NM_001270398, intron 1 of 19) 6667 NM_001270398 5754 Hs.90572 NM_002821 ENSG00000112655 PTK7 CCK-4|CCK4 protein tyrosine kinase 7 (inactive) protein-coding 194.25-6 chr11 98137165 98137638 + 0.75 NA Intergenic Charlie10|DNA|hAT-Charlie -883548 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 250-11 chr21 28424725 28425464 + 0.75 NA Intergenic Intergenic -114224 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 162.75-74 chr6 131155442 131155781 + 0.75 NA intron (NM_016377, intron 2 of 7) L1MC5a|LINE|L1 20144 NM_016377 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 150.5-124 chr9 27707883 27708120 + 0.75 NA Intergenic LTR45C|LTR|ERV1 -134135 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 149.75-37 chr2 85945064 85945363 + 0.75 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 55933 NR_110569 101928113 Hs.625888 NR_110569 ST3GAL5-AS1 - ST3GAL5 antisense RNA 1 (head to head) ncRNA 322-5 chrX 52274372 52274941 + 0.75 NA Intergenic Intergenic 61986 NR_107055 102466880 NR_107055 ENSG00000275335 MIR8088 hsa-mir-8088 microRNA 8088 ncRNA 155-34 chr16 72039331 72039596 + 0.75 NA Intergenic Intergenic -15042 NM_001318138 3240 Hs.513711 NM_005143 ENSG00000257017 HP BP|HP2ALPHA2|HPA1S haptoglobin protein-coding 195.25-23 chr18 71635271 71635774 + 0.75 NA Intergenic Intergenic -56566 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 221.5-50 chr8 67161079 67161499 + 0.75 NA intron (NM_001363133, intron 18 of 27) intron (NM_001363133, intron 18 of 27) 77441 NM_001291339 79848 Hs.370147 NM_024790 ENSG00000104218 CSPP1 CSPP|JBTS21 centrosome and spindle pole associated protein 1 protein-coding 193.75-52 chr5 125026248 125026712 + 0.75 NA Intergenic Intergenic -10351 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 245.5-19 chr2 211588612 211589089 + 0.75 NA intron (NM_001042599, intron 19 of 26) intron (NM_001042599, intron 19 of 26) 837510 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 244-17 chr3 7912688 7913120 + 0.75 NA Intergenic MIR|SINE|MIR 103403 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 148-64 chr3 118769639 118769935 + 0.75 NA intron (NR_135547, intron 1 of 3) intron (NR_135547, intron 1 of 3) 41046 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 218-8 chr12 114432233 114432802 + 0.75 NA Intergenic Intergenic -24075 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 251.75-22 chr4 104042700 104043216 + 0.75 NA Intergenic Intergenic -322973 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 201.5-9 chr13 22606172 22606526 + 0.75 NA Intergenic L1MC1|LINE|L1 291832 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 200.75-40 chr5 2488578 2489080 + 0.75 NA Intergenic Intergenic -176628 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 254.25-13 chr5 147702834 147703359 + 0.75 NA intron (NM_001270934, intron 1 of 20) intron (NM_001270934, intron 1 of 20) 79632 NM_001270941 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 183.5-42 chr3 23918134 23918451 + 0.75 NA intron (NM_001253384, intron 2 of 4) intron (NM_001253384, intron 2 of 4) 1160 NM_001253383 6138 Hs.381219 NM_002948 ENSG00000174748 RPL15 DBA12|EC45|L15|RPL10|RPLY10|RPYL10 ribosomal protein L15 protein-coding 160.5-83 chr5 16888613 16888855 + 0.75 NA intron (NM_012334, intron 1 of 40) AluJo|SINE|Alu 47554 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 196.75-25 chr2 83397382 83397883 + 0.75 NA Intergenic Intergenic -125182 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 182.5-4 chr1 240148819 240149244 + 0.75 NA intron (NM_020066, intron 2 of 17) intron (NM_020066, intron 2 of 17) 57148 NM_001348094 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 169.25-6 chr11 99457703 99458120 + 0.75 NA intron (NM_001243271, intron 2 of 20) Charlie2b|DNA|hAT-Charlie -98234 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 207.25-15 chr12 80438344 80438945 + 0.75 NA Intergenic Tigger5b|DNA|TcMar-Tigger -5591 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 254-15 chr8 137370479 137370956 + 0.75 NA Intergenic Intergenic 42871 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 184-52 chr7 12317919 12318470 + 0.75 NA Intergenic Intergenic 85671 NM_001135924 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 180-74 chr9 3791680 3792063 + 0.75 NA Intergenic L4_A_Mam|LINE|RTE-X -106775 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 256.25-14 chr4 53775717 53776463 + 0.75 NA Intergenic Intergenic 80189 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 170.75-29 chr2 39476132 39476375 + 0.75 NA intron (NR_037875, intron 3 of 5) L1MEi|LINE|L1 38837 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 161.75-74 chr5 20834459 20834780 + 0.75 NA intron (NR_149120, intron 5 of 11) intron (NR_149120, intron 5 of 11) -219084 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 153.5-53 chr2 151806802 151807151 + 0.75 NA intron (NM_001037174, intron 4 of 5) intron (NM_001037174, intron 4 of 5) 21445 NM_177985 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 178.75-19 chr16 47128936 47129395 + 0.75 NA intron (NM_001201477, intron 3 of 8) intron (NM_001201477, intron 3 of 8) 14780 NM_001201477 81831 Hs.645802 NM_018092 ENSG00000171208 NETO2 BTCL2|NEOT2 neuropilin and tolloid like 2 protein-coding 263.25-8 chr14 81329701 81330142 + 0.75 NA intron (NM_001366849, intron 5 of 8) intron (NM_001366849, intron 5 of 8) 97854 NM_001256430 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 192-15 chr12 55233750 55234101 + 0.75 NA Intergenic Intergenic 12900 NM_001005280 121364 Hs.554557 NM_001005280 ENSG00000179919 OR10A7 OR12-6 olfactory receptor family 10 subfamily A member 7 protein-coding 207.5-20 chr18 45207775 45208299 + 0.75 NA intron (NM_001371319, intron 3 of 23) MIRc|SINE|MIR -4958 NM_001242692 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 203.75-11 chr2 78595609 78595973 + 0.75 NA Intergenic Intergenic 50260 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 148.5-31 chr15 101350941 101351260 + 0.75 NA intron (NM_138323, intron 13 of 13) MER63C|DNA|hAT-Blackjack 16663 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 198.25-31 chr20 63233349 63233774 + 0.75 NA Intergenic Intergenic -2344 NM_022161 79444 Hs.256126 NM_022161 ENSG00000101197 BIRC7 KIAP|LIVIN|ML-IAP|MLIAP|RNF50 baculoviral IAP repeat containing 7 protein-coding 240.25-9 chr12 98378000 98378374 + 0.75 NA Intergenic L2a|LINE|L2 78958 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 205.25-23 chr22 34867232 34867673 + 0.75 NA intron (NR_138042, intron 3 of 4) L1MB7|LINE|L1 130464 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 177.75-9 chr10 65335922 65336404 + 0.75 NA Intergenic Intergenic -235262 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 249-4 chr2 67102111 67102672 + 0.75 NA intron (NR_110564, intron 1 of 4) L1ME4b|LINE|L1 15945 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 165.25-58 chr5 164447565 164447875 + 0.75 NA TTS (NR_105064) TTS (NR_105064) 19682 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 160-86 chr8 110982667 110983129 + 0.75 NA TTS (NR_125416) TTS (NR_125416) 44535 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 237.75-19 chr4 132029845 132030445 + 0.75 NA Intergenic FRAM|SINE|Alu 265307 NR_125883 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 164.75-85 chr7 90327311 90327629 + 0.75 NA Intergenic AluJb|SINE|Alu -7753 NR_110085 101927446 Hs.734999 NR_110085 ENSG00000105793 LOC101927446 - uncharacterized LOC101927446 ncRNA 153.25-52 chr19 56865907 56866291 + 0.75 NA Intergenic Intergenic 25197 NR_024059 100073347 Hs.467337 NR_024059 ENSG00000268654 MIMT1 LINC00067|MIM1|NCRNA00067 MER1 repeat containing imprinted transcript 1 ncRNA 157-77 chr5 125604630 125604849 + 0.75 NA Intergenic Intergenic 111478 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 202-47 chr6 141122295 141122809 + 0.75 NA Intergenic Intergenic 438738 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 194.25-19 chr2 60442928 60443424 + 0.75 NA Intergenic Intergenic -51801 NR_132992 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 332.5-5 chr6 112162637 112163437 + 0.75 NA intron (NM_001105206, intron 13 of 38) AluJb|SINE|Alu -73559 NR_121193 101927640 Hs.510007 NR_121193 LOC101927640 - uncharacterized LOC101927640 ncRNA 199-5 chr12 12634266 12634729 + 0.75 NA intron (NM_001310, intron 1 of 3) intron (NM_001310, intron 1 of 3) 22621 NM_001310 1389 Hs.591156 NM_001310 ENSG00000111269 CREBL2 - cAMP responsive element binding protein like 2 protein-coding 248.25-11 chr21 22867824 22868344 + 0.75 NA Intergenic Intergenic -211200 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 198.5-39 chr4 83000892 83001308 + 0.75 NA intron (NM_001115007, intron 1 of 12) AluSx|SINE|Alu 9723 NM_001288996 132660 Hs.96952 NM_194282 ENSG00000189308 LIN54 CXCDC1|JC8.6|MIP120|TCX1 lin-54 DREAM MuvB core complex component protein-coding 304-4 chr4 60506725 60507381 + 0.75 NA Intergenic L1MA3|LINE|L1 -415566 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 257-8 chr3 168268289 168269104 + 0.75 NA intron (NR_021485, intron 1 of 15) UCON54|Unknown|Unknown 19174 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 224.25-39 chr9 22449622 22450009 + 0.75 NA intron (NM_022160, intron 1 of 1) intron (NM_022160, intron 1 of 1) 2991 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 190-59 chr6 89865437 89865858 + 0.75 NA intron (NM_012115, intron 7 of 9) AluY|SINE|Alu -28822 NM_032602 84694 Hs.334499 NM_032602 ENSG00000135355 GJA10 CX62 gap junction protein alpha 10 protein-coding 163.5-68 chr22 43470710 43470998 + 0.75 NA intron (NM_001362786, intron 3 of 6) intron (NM_001362786, intron 3 of 6) -45400 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 186.75-42 chr2 112238030 112238456 + 0.75 NA intron (NM_032494, intron 3 of 8) intron (NM_032494, intron 3 of 8) 16799 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 216.25-3 chr1 200613707 200614063 + 0.75 NA intron (NM_001305792, intron 2 of 27) MIRb|SINE|MIR 4953 NM_001305792 9928 Hs.3104 NM_014875 ENSG00000118193 KIF14 MCPH20|MKS12 kinesin family member 14 protein-coding 181-26 chr20 39317767 39318162 + 0.75 NA Intergenic L1MC4|LINE|L1 -93216 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 237.5-10 chr17 52016575 52017140 + 0.75 NA intron (NM_001082533, intron 3 of 9) AluSz|SINE|Alu 141857 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 188.5-38 chr3 77894232 77894646 + 0.75 NA Intergenic Intergenic 154524 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 220.75-42 chr8 80900356 80900701 + 0.75 NA Intergenic L1MB5|LINE|L1 -25747 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 246.75-8 chr20 19840262 19840780 + 0.75 NA Intergenic Intergenic -46000 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 229.75-30 chr5 148571845 148572460 + 0.75 NA intron (NM_001040172, intron 1 of 5) UCON74|DNA?|DNA? 64909 NM_001040172 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 173-11 chr1 217336838 217337263 + 0.75 NA Intergenic Intergenic -199348 NM_001243510 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 149.25-49 chr2 156800729 156801129 + 0.75 NA Intergenic Intergenic 364550 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 179-25 chr2 65996790 65997221 + 0.75 NA Intergenic MER58B|DNA|hAT-Charlie 361323 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 238-14 chr3 176374833 176375410 + 0.75 NA Intergenic MLT1H-int|LTR|ERVL-MaLR 130570 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 169.75-6 chr1 96852992 96853416 + 0.75 NA Intergenic L1PA3|LINE|L1 130566 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 167.5-78 chr5 106784985 106785368 + 0.75 NA Intergenic Intergenic 225838 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 158.5-6 chr1 215459720 215460008 + 0.75 NA Intergenic Intergenic -107440 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 220.25-35 chr5 85471697 85472177 + 0.75 NA Intergenic L1PREC2|LINE|L1 -810507 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 153.25-39 chr14 73845319 73845576 + 0.75 NA Intergenic AluJb|SINE|Alu -6384 NM_001371330 169-24 chr17 51934924 51935285 + 0.75 NA intron (NM_001082533, intron 3 of 9) intron (NM_001082533, intron 3 of 9) 223610 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 269.75 chr1 104618437 104618971 + 0.75 NA Intergenic Intergenic 545681 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 236.5-19 chr3 1424122 1424708 + 0.75 NA Intergenic Intergenic 331391 NM_001349350 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 227.25-2 chr1 208770537 208770886 + 0.75 NA Intergenic Intergenic 42023 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 240.25-25 chr7 96252192 96252662 + 0.75 NA intron (NM_001160210, intron 3 of 17) L2a|LINE|L2 -32671 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 212.25-32 chr5 15311325 15311824 + 0.75 NA Intergenic Intergenic -45014 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 287.25-11 chr5 44955513 44956315 + 0.75 NA Intergenic Intergenic 146967 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 200.75-50 chr7 53529476 53529907 + 0.75 NA Intergenic L1MA3|LINE|L1 282240 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 185.75-22 chr14 98084677 98084980 + 0.75 NA Intergenic L1MEd|LINE|L1 -106704 NR_152746 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 256.75-25 chr8 102858815 102859239 + 0.75 NA intron (NM_015878, intron 1 of 12) intron (NM_015878, intron 1 of 12) 5136 NM_001301668 51582 Hs.459106 NM_015878 ENSG00000155096 AZIN1 AZI|AZI1|AZIA1|OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 302.75 chr14 49073451 49074044 + 0.75 NA Intergenic L1M1|LINE|L1 512633 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 145.75-48 chr2 36869731 36870002 + 0.75 NA intron (NM_003162, intron 10 of 17) intron (NM_003162, intron 10 of 17) 96670 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 219.75-2 chr1 91503603 91504097 + 0.75 NA intron (NM_001134420, intron 2 of 11) L1ME4a|LINE|L1 2742 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 244-4 chr12 29363203 29363743 + 0.75 NA intron (NM_016570, intron 5 of 13) intron (NM_016570, intron 5 of 13) 17699 NM_016570 51290 Hs.339453 NM_016570 ENSG00000087502 ERGIC2 CDA14|Erv41|PTX1|cd002 ERGIC and golgi 2 protein-coding 259-10 chr5 120051464 120052150 + 0.75 NA Intergenic Intergenic -412471 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 228.25-37 chrX 43916226 43916652 + 0.75 NA Intergenic Tigger3a|DNA|TcMar-Tigger -33293 NR_046631 100873919 NR_046631 ENSG00000236276 NDP-AS1 - NDP antisense RNA 1 ncRNA 188.25-58 chr7 81256053 81256400 + 0.75 NA Intergenic Intergenic 305593 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 257.25-20 chr5 28990597 28991205 + 0.75 NA Intergenic Intergenic 64031 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 153-61 chr4 42923262 42923636 + 0.75 NA intron (NM_001080476, intron 1 of 3) intron (NM_001080476, intron 1 of 3) 30183 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 192-53 chr7 104415018 104415457 + 0.75 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 86581 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 201.5-5 chr10 65309564 65309971 + 0.75 NA Intergenic Intergenic -261658 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 220-22 chr4 82536770 82537190 + 0.75 NA intron (NM_001353454, intron 1 of 7) L1ME4a|LINE|L1 25008 NM_001080506 441027 Hs.507676 NM_001080506 ENSG00000249242 TMEM150C TTN3 transmembrane protein 150C protein-coding 241.25-14 chr2 185585384 185585946 + 0.75 NA Intergenic L1M1|LINE|L1 153054 NR_110216 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 220-36 chrX 67641968 67642341 + 0.75 NA intron (NM_001011645, intron 2 of 8) intron (NM_001011645, intron 2 of 8) 97531 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 221-11 chr13 71919474 71919940 + 0.75 NA Intergenic Intergenic -52503 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 178-31 chr18 61998474 61998853 + 0.75 NA Intergenic Intergenic -105656 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 159.5-79 chr5 120182878 120183165 + 0.75 NA Intergenic L1MA1|LINE|L1 -281257 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 187.25-70 chr8 131111975 131112454 + 0.75 NA Intergenic L1MA1|LINE|L1 -71305 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 235.25-8 chr14 79286250 79286564 + 0.75 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 7027 NM_001105250 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 314.75-3 chr2 66356658 66357438 + 0.75 NA Intergenic MLT1N2|LTR|ERVL-MaLR 1280 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 167.5-53 chr21 18559050 18559436 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR 126921 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 154.5-73 chr4 71587028 71587309 + 0.75 NA Intergenic L1M3c|LINE|L1 196911 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 168.5-63 chr3 18889545 18889995 + 0.75 NA Intergenic Intergenic -258740 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 161-87 chr8 52341971 52342351 + 0.75 NA intron (NR_148195, intron 2 of 3) L1MA8|LINE|L1 67595 NM_001352884 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 252.5-18 chr3 44508849 44509273 + 0.75 NA intron (NM_001287349, intron 1 of 4) intron (NM_001287349, intron 1 of 4) 1556 NM_001287349 285346 Hs.648974 NM_001287349 ENSG00000178917 ZNF852 - zinc finger protein 852 protein-coding 154-46 chr19 35090690 35091005 + 0.75 NA intron (NR_024561, intron 1 of 3) intron (NR_024561, intron 1 of 3) 15424 NR_024561 100128675 Hs.633989 NR_024561 ENSG00000227392 HPN-AS1 - HPN antisense RNA 1 ncRNA 224.25-29 chr5 42186561 42187277 + 0.75 NA Intergenic MIR|SINE|MIR -11574 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 189-48 chr4 116731708 116732058 + 0.75 NA Intergenic Intergenic 353693 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 237.25-4 chr16 6367455 6367844 + 0.75 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) 347946 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 155-95 chr7 14921650 14921875 + 0.75 NA intron (NM_001350717, intron 1 of 24) intron (NM_001350717, intron 1 of 24) -18106 NM_001350715 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 201.25-48 chr8 52400627 52401008 + 0.75 NA intron (NR_148195, intron 2 of 3) L1MA9|LINE|L1 8939 NM_001352884 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 163.75-56 chr4 188651218 188651560 + 0.75 NA Intergenic Intergenic -125268 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 194.25-30 chr4 30934364 30934808 + 0.75 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) 214217 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 275-10 chr2 169590714 169591134 + 0.75 NA intron (NM_004792, intron 1 of 13) AluJr|SINE|Alu 6573 NM_004792 9360 Hs.470544 NM_004792 ENSG00000138398 PPIG CARS-Cyp|CYP|SCAF10|SRCyp peptidylprolyl isomerase G protein-coding 225.75-27 chr6 39691427 39691951 + 0.75 NA 3' UTR (NM_001351503, exon 4 of 4) 3' UTR (NM_001351503, exon 4 of 4) 33719 NM_001289020 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 202.5-23 chr18 1974376 1974909 + 0.75 NA Intergenic Intergenic 596863 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 164.5-18 chr14 57673420 57673755 + 0.75 NA intron (NM_001352014, intron 1 of 9) intron (NM_001352014, intron 1 of 9) -179730 NM_001283057 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 163.25-68 chr7 36475847 36476175 + 0.75 NA Intergenic Intergenic -85654 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 353.5-4 chr2 21881833 21882606 + 0.75 NA Intergenic Intergenic -171567 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 225.25-13 chr15 39816357 39816737 + 0.75 NA intron (NM_001271854, intron 1 of 3) intron (NM_001271854, intron 1 of 3) 12729 NM_001271855 11245 Hs.37196 NM_007223 ENSG00000166073 GPR176 HB-954 G protein-coupled receptor 176 protein-coding 146.75-62 chr20 44229879 44230181 + 0.75 NA Intergenic Intergenic -17069 NM_001256738 78997 Hs.517059 NM_024034 ENSG00000124194 GDAP1L1 dJ881L22.1|dJ995J12.1.1 ganglioside induced differentiation associated protein 1 like 1 protein-coding 174.25-15 chr11 113046791 113047136 + 0.75 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -83503 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 166-39 chr2 102870136 102870533 + 0.75 NA Intergenic Intergenic 25388 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 203-26 chr20 46480907 46481299 + 0.75 NA Intergenic Intergenic -15811 NR_026640 7686 Hs.717103 NR_026640 ENSG00000225849 MKRN7P MKRNP3|ZNF127L5|dJ981L23.2 makorin ring finger protein 7, pseudogene pseudo 155.75-57 chr2 125142698 125143053 + 0.75 NA Intergenic L1MEg|LINE|L1 975110 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 160.75-18 chr11 63940363 63940615 + 0.75 NA intron (NM_001300800, intron 1 of 7) MIRb|SINE|MIR 1158 NM_001300800 79829 Hs.523753 NM_024771 ENSG00000110583 NAA40 NAT11|NatD|PATT1|hNatD N(alpha)-acetyltransferase 40, NatD catalytic subunit protein-coding 199.5-49 chr8 109546035 109546501 + 0.75 NA intron (NM_001278938, intron 1 of 6) intron (NM_001278938, intron 1 of 6) 5642 NM_001278938 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 170.25-47 chr3 104313786 104314052 + 0.75 NA Intergenic L1MEg|LINE|L1 -789803 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 235.5 chr1 36280862 36281314 + 0.75 NA intron (NM_001321471, intron 3 of 12) AluSq2|SINE|Alu -25280 NM_001162530 79729 Hs.524496 NM_024676 ENSG00000214193 SH3D21 C1orf113 SH3 domain containing 21 protein-coding 173.75-25 chr15 69206978 69207456 + 0.75 NA intron (NM_001324094, intron 2 of 5) L1MD3|LINE|L1 46582 NM_001324092 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 222.5-2 chr1 13666956 13667319 + 0.75 NA Intergenic (T)n|Simple_repeat|Simple_repeat -33051 NM_001135610 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 200.5 chr1 187637443 187637872 + 0.75 NA Intergenic HERVIP10B3-int|LTR|ERV1 194029 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 191.75-24 chr15 25361246 25361705 + 0.75 NA intron (NM_001354542, intron 5 of 11) intron (NM_001354542, intron 5 of 11) 76754 NM_001354526 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 159.25 chr1 57656306 57656644 + 0.75 NA intron (NM_001353980, intron 3 of 5) intron (NM_001353980, intron 3 of 5) -204106 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 185.25-3 chr1 83706772 83707026 + 0.75 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 153647 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 204.25-35 chr4 47528527 47529123 + 0.75 NA intron (NM_020453, intron 5 of 22) L1PB4|LINE|L1 43550 NM_020453 57205 Hs.437241 NM_020453 ENSG00000145246 ATP10D ATPVD ATPase phospholipid transporting 10D (putative) protein-coding 167.25-27 chr17 52438963 52439294 + 0.75 NA intron (NR_146898, intron 1 of 3) L1PA15|LINE|L1 48606 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 169.25-33 chr2 229379419 229379847 + 0.75 NA intron (NM_139072, intron 11 of 12) intron (NM_139072, intron 11 of 12) -108346 NM_017933 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 155.5-76 chr4 122706299 122706639 + 0.75 NA Intergenic Intergenic 25989 NR_024041 729338 Hs.647968 NR_024041 CETN4P - centrin 4, pseudogene pseudo 156.75-77 chr5 111263799 111264112 + 0.75 NA intron (NM_001744, intron 1 of 10) L2a|LINE|L2 39571 NM_001323376 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 241.5-6 chr15 56182825 56183211 + 0.75 NA intron (NM_001370561, intron 4 of 11) L1ME3Cz|LINE|L1 6914 NM_001368074 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 150.5-72 chr21 27728675 27728966 + 0.75 NA intron (NR_024357, intron 1 of 3) Tigger3b|DNA|TcMar-Tigger 6441 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 216.75-34 chr8 91199894 91200403 + 0.75 NA intron (NR_148895, intron 8 of 10) MER5A1|DNA|hAT-Charlie -5337 NR_039805 100616245 NR_039805 ENSG00000266194 MIR4661 - microRNA 4661 ncRNA 179.5-55 chr4 36666928 36667505 + 0.75 NA Intergenic MIRc|SINE|MIR -25316 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 169.25-54 chr8 109035828 109036288 + 0.75 NA Intergenic L1ME3F|LINE|L1 -50570 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 220-27 chr5 78548885 78549316 + 0.75 NA intron (NM_005779, intron 3 of 4) MLT1H|LTR|ERVL-MaLR 99672 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 215-4 chr14 45180755 45181111 + 0.75 NA intron (NM_001308133, intron 13 of 21) intron (NM_001308133, intron 13 of 21) 44994 NM_001308134 57697 Hs.509229 NM_020937 ENSG00000187790 FANCM FAAP250|KIAA1596|POF15|SPGF28 FA complementation group M protein-coding 212.5-24 chr2 154180597 154181145 + 0.75 NA intron (NM_052917, intron 4 of 12) MER8|DNA|TcMar-Tigger 236477 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 166.75-63 chr4 65021021 65021469 + 0.75 NA Intergenic Intergenic -16745 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 237.75 chr1 17924877 17925414 + 0.75 NA Intergenic Intergenic -140512 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 204.75-37 chr3 176101950 176102407 + 0.75 NA Intergenic L2a|LINE|L2 -142373 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 188.75-46 chr4 41460389 41460887 + 0.75 NA intron (NM_001289122, intron 1 of 25) intron (NM_001289122, intron 1 of 25) -77519 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 201.5-19 chr17 32747954 32748504 + 0.75 NA intron (NM_015194, intron 12 of 21) intron (NM_015194, intron 12 of 21) 128895 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 199.75-43 chr4 123183744 123184091 + 0.75 NA intron (NM_001345856, intron 14 of 15) AluJb|SINE|Alu -212878 NM_199327 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 258-9 chr16 23202897 23203545 + 0.75 NA intron (NM_001039, intron 6 of 12) L2c|LINE|L2 20476 NM_001039 6340 Hs.371727 NM_001039 ENSG00000166828 SCNN1G BESC3|ENaCg|ENaCgamma|LDLS2|PHA1|SCNEG sodium channel epithelial 1 gamma subunit protein-coding 164.5-17 chr14 48404759 48405062 + 0.75 NA Intergenic L1MA4|LINE|L1 -609896 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 177.75-28 chr18 64582648 64583006 + 0.75 NA Intergenic L1ME3A|LINE|L1 -322772 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 325.5-6 chr4 62736233 62736813 + 0.75 NA Intergenic Intergenic -574758 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 190.5-34 chr3 35680617 35681080 + 0.75 NA promoter-TSS (NM_198399) promoter-TSS (NM_198399) -92 NM_198399 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 211.75-34 chr6 16725429 16725942 + 0.75 NA intron (NM_000332, intron 3 of 8) intron (NM_000332, intron 3 of 8) 34499 NR_152114 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 150.75-22 chr14 73442203 73442659 + 0.75 NA intron (NM_001005743, intron 1 of 12) L1ME1|LINE|L1 16149 NM_003744 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 252-3 chr1 174852306 174852981 + 0.75 NA intron (NM_001366446, intron 19 of 25) AluSz|SINE|Alu -21743 NM_001243763 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 148.75-8 chr1 238678492 238678776 + 0.75 NA Intergenic Intergenic -192617 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 222.5-14 chr12 114137461 114137819 + 0.75 NA Intergenic Intergenic 104130 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 327-3 chr2 58105932 58106636 + 0.75 NA intron (NM_001130483, intron 7 of 13) intron (NM_001130483, intron 7 of 13) 59572 NM_001130481 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 192-23 chr16 71229546 71229960 + 0.75 NA intron (NM_001198543, intron 1 of 18) L1ME1|LINE|L1 969 NM_001270974 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 173.75-59 chr6 130976343 130976783 + 0.75 NA intron (NM_001135554, intron 1 of 14) intron (NM_001135554, intron 1 of 14) -6080 NM_001350299 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 162-43 chr20 54476275 54476572 + 0.75 NA intron (NM_018431, intron 1 of 7) CpG 830 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 215.5-10 chr12 12936874 12937368 + 0.75 NA intron (NR_149067, intron 1 of 2) MLT1M|LTR|ERVL-MaLR 9395 NR_149066 100506314 Hs.127718 NR_038920 ENSG00000247498 GPRC5D-AS1 - GPRC5D and HEBP1 antisense RNA 1 ncRNA 229-18 chr5 114313101 114313449 + 0.75 NA Intergenic Tigger12|DNA|TcMar-Tigger -48795 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 165.25-33 chr21 24460595 24460898 + 0.75 NA intron (NR_135520, intron 4 of 5) L1M4a1|LINE|L1 32006 NR_135519 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 242.75-24 chr4 114457677 114458027 + 0.75 NA Intergenic MER4D1|LTR|ERV1 -140550 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 186-8 chr14 34483128 34483444 + 0.75 NA Intergenic Intergenic -21046 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 236.5-30 chr6 56786826 56787213 + 0.75 NA intron (NM_001144770, intron 2 of 94) MIR|SINE|MIR 56646 NM_183380 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 203-11 chr11 40715095 40715617 + 0.75 NA intron (NM_020929, intron 1 of 4) L1M5|LINE|L1 -422226 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 179.75-63 chr7 79236267 79236701 + 0.75 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -216473 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 317-3 chr14 67001063 67001755 + 0.75 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -188031 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 158.25-2 chr1 27886343 27886691 + 0.75 NA 3' UTR (NM_001039477, exon 4 of 4) 3' UTR (NM_001039477, exon 4 of 4) 13973 NM_001105556 9473 Hs.10649 NM_004848 ENSG00000130775 THEMIS2 C1orf38|ICB-1|ICB1 thymocyte selection associated family member 2 protein-coding 229.75-20 chr3 94527318 94527833 + 0.75 NA Intergenic Intergenic -410688 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 243.75-10 chr2 62508147 62508694 + 0.75 NA Intergenic L2c|LINE|L2 -2225 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 264.75-13 chr5 41509263 41509848 + 0.75 NA intron (NM_001005473, intron 1 of 2) intron (NM_001005473, intron 1 of 2) 1046 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 181-39 chr6 43701815 43702252 + 0.75 NA Intergenic MIRb|SINE|MIR -14221 NM_001193343 55168 Hs.520149 NM_018135 ENSG00000096080 MRPS18A HumanS18b|MRP-S18-3|MRP-S18-a|MRPS18-3|S18bmt|S18mt-a mitochondrial ribosomal protein S18A protein-coding 207.75-44 chr7 85071724 85072319 + 0.75 NA intron (NM_152754, intron 4 of 16) MIR|SINE|MIR 49910 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 205.25-27 chr4 64377462 64377910 + 0.75 NA intron (NM_001363796, intron 1 of 11) intron (NM_001363796, intron 1 of 11) 31764 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 198.25-38 chr4 143416481 143417201 + 0.75 NA intron (NM_207123, intron 2 of 10) MER85|DNA|PiggyBac 73381 NR_036091 100423017 NR_036091 ENSG00000265623 MIR3139 - microRNA 3139 ncRNA 220.25-12 chr14 64536489 64536883 + 0.75 NA intron (NR_110550, intron 1 of 3) AluJo|SINE|Alu 3682 NR_110550 102723809 Hs.667192 NR_110550 ENSG00000259116 LOC102723809 - uncharacterized LOC102723809 ncRNA 213-28 chr5 73041019 73041614 + 0.75 NA intron (NM_001146032, intron 10 of 24) intron (NM_001146032, intron 10 of 24) -79259 NM_001161342 134285 Hs.162246 NM_173490 ENSG00000157111 TMEM171 PRP2 transmembrane protein 171 protein-coding 224.75-17 chr16 89176503 89177021 + 0.75 NA intron (NM_004933, intron 1 of 13) intron (NM_004933, intron 1 of 13) 5014 NM_004933 1013 Hs.148090 NM_004933 ENSG00000129910 CDH15 CDH14|CDH3|CDHM|MCAD|MRD3 cadherin 15 protein-coding 160-67 chr5 93551466 93551796 + 0.75 NA intron (NR_109819, intron 4 of 5) intron (NR_109819, intron 4 of 5) 19712 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 174-65 chr7 80361599 80362129 + 0.75 NA Intergenic L1MEg|LINE|L1 12575 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 147.5-44 chr2 112868399 112868836 + 0.75 NA Intergenic Intergenic -31838 NM_000576 3553 Hs.126256 NM_000576 ENSG00000125538 IL1B IL-1|IL1-BETA|IL1F2 interleukin 1 beta protein-coding 240.75-6 chr11 101756829 101757447 + 0.75 NA Intergenic L1MC5a|LINE|L1 -157872 NM_001363543 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 356.25 chr11 101501404 101502350 + 0.75 NA intron (NM_004621, intron 2 of 12) intron (NM_004621, intron 2 of 12) 18028 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 173.5-8 chr1 192794769 192795107 + 0.75 NA Intergenic L2c|LINE|L2 -14101 NM_002923 5997 Hs.78944 NM_002923 ENSG00000116741 RGS2 G0S8 regulator of G protein signaling 2 protein-coding 311.5-3 chr10 44158926 44159565 + 0.75 NA Intergenic L1MDa|LINE|L1 -133505 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 213.25-49 chr9 90422016 90422483 + 0.75 NA intron (NR_109795, intron 1 of 2) intron (NR_109795, intron 1 of 2) 11240 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 166-66 chr7 14335508 14335952 + 0.75 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -344305 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 301-10 chr8 85845414 85845948 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger -17739 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 156.75-75 chr5 86945446 86945868 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 169297 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 204-6 chr10 107875532 107875876 + 0.75 NA intron (NR_125760, intron 4 of 4) MER34B-int|LTR|ERV1 193589 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 264.75-23 chr8 52081906 52082430 + 0.75 NA Intergenic AluJb|SINE|Alu -112194 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 180.25-77 chr8 120154785 120155135 + 0.75 NA intron (NM_021110, intron 2 of 47) intron (NM_021110, intron 2 of 47) 29858 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 183.5-45 chr3 175479528 175479912 + 0.75 NA intron (NM_207015, intron 9 of 13) intron (NM_207015, intron 9 of 13) 110180 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 160.5-89 chr5 59846573 59846920 + 0.75 NA intron (NM_001165899, intron 3 of 16) MER102c|DNA|hAT-Charlie 46980 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 276-5 chr22 27953304 27953991 + 0.75 NA intron (NR_026963, intron 2 of 4) L1ME4b|LINE|L1 -33035 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 221.75-4 chr10 53077671 53078045 + 0.75 NA Intergenic L1MEb|LINE|L1 -306158 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 271-5 chr2 146845545 146845985 + 0.75 NA Intergenic Intergenic 258708 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 155-103 chr8 82217919 82218462 + 0.75 NA Intergenic L1MEf|LINE|L1 -375904 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 227.75-31 chr7 94021622 94022041 + 0.75 NA Intergenic Intergenic -17476 NM_001317739 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 190.75-9 chr10 17413532 17413932 + 0.75 NA intron (NM_001004470, intron 2 of 7) intron (NM_001004470, intron 2 of 7) 26796 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 212.5-25 chr2 214737142 214737513 + 0.75 NA intron (NM_001282549, intron 3 of 4) MIR3|SINE|MIR 72356 NM_000465 580 Hs.591642 NM_000465 ENSG00000138376 BARD1 - BRCA1 associated RING domain 1 protein-coding 163.25-7 chr1 153146527 153146947 + 0.75 NA Intergenic L1ME3B|LINE|L1 4153 NM_001014291 6706 Hs.490253 NM_001014291 ENSG00000159516 SPRR2G - small proline rich protein 2G protein-coding 177.25-25 chr16 64379024 64379373 + 0.75 NA Intergenic Intergenic 742865 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 168.75-108 chrX 99465177 99465536 + 0.75 NA Intergenic L1MA9|LINE|L1 944917 NM_001105243 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 221.25-14 chr17 59457936 59458537 + 0.75 NA intron (NR_110813, intron 2 of 2) Arthur1|DNA|hAT-Tip100 68621 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 240.75-28 chrX 70574143 70574656 + 0.75 NA intron (NM_001003811, intron 26 of 30) intron (NM_001003811, intron 26 of 30) -118405 NR_109801 100873930 Hs.571699 NR_046586 ENSG00000231651 DLG3-AS1 - DLG3 antisense RNA 1 ncRNA 150-53 chr22 40644565 40644804 + 0.75 NA Intergenic Intergenic -7965 NM_001282662 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 149-2 chr1 55742956 55743163 + 0.75 NA Intergenic L1PA3|LINE|L1 201904 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 213.25-26 chr21 43925323 43925721 + 0.75 NA intron (NM_001037553, intron 1 of 8) intron (NM_001037553, intron 1 of 8) 124 NM_001037553 56894 Hs.248785 NM_020132 ENSG00000160216 AGPAT3 1-AGPAT 3|LPAAT-GAMMA1|LPAAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 protein-coding 167.25-2 chr1 89740223 89740522 + 0.75 NA Intergenic MIR3|SINE|MIR -80660 NM_001134479 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 VRAC subunit D protein-coding 157.25-82 chr6 68074618 68075108 + 0.75 NA Intergenic MER106B|DNA|hAT-Charlie 19512 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 204.75-35 chr3 136166770 136167075 + 0.75 NA intron (NM_018133, intron 1 of 1) intron (NM_018133, intron 1 of 1) 27546 NM_001145417 55167 Hs.18631 NM_018133 ENSG00000174579 MSL2 MSL-2|MSL2L1|RNF184 MSL complex subunit 2 protein-coding 212.25-20 chr18 3084303 3084684 + 0.75 NA intron (NM_019856, intron 30 of 36) intron (NM_019856, intron 30 of 36) -72546 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 153.75-91 chr8 133489224 133489575 + 0.75 NA intron (NM_003033, intron 3 of 8) intron (NM_003033, intron 3 of 8) 82488 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 187-3 chr10 112536055 112536378 + 0.75 NA intron (NM_001365712, intron 5 of 8) intron (NM_001365712, intron 5 of 8) -88613 NM_001351082 64429 Hs.196990 NM_022494 ENSG00000023041 ZDHHC6 DHHC-6|ZNF376 zinc finger DHHC-type containing 6 protein-coding 162-14 chr11 39995158 39995449 + 0.75 NA Intergenic AluSc|SINE|Alu 297827 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 190.75-29 chr18 13340905 13341272 + 0.75 NA intron (NM_181482, intron 2 of 5) L1MB2|LINE|L1 62983 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 280-4 chr16 78949306 78950032 + 0.75 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 651068 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 146-40 chr2 27005362 27005741 + 0.75 NA intron (NR_149018, intron 1 of 5) intron (NR_149018, intron 1 of 5) 9037 NR_149018 100129724 Hs.666730 NR_149018 ENSG00000205500 LOC100129724 - uncharacterized LOC100129724 ncRNA 163.75-18 chr11 115662023 115662435 + 0.75 NA Intergenic Intergenic 72533 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 270.25-12 chr2 198500220 198501048 + 0.75 NA Intergenic L3|LINE|CR1 -125537 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 153-55 chr3 118559916 118560188 + 0.75 NA intron (NR_135547, intron 2 of 3) L1ME2z|LINE|L1 -81716 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 319-2 chr10 118711341 118711994 + 0.75 NA intron (NM_153810, intron 3 of 8) intron (NM_153810, intron 3 of 8) 43303 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 170.5-60 chr5 130033014 130033251 + 0.75 NA intron (NM_175856, intron 2 of 2) ERV3-16A3_LTR|LTR|ERVL 128667 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 151.75-76 chr5 35416380 35416768 + 0.75 NA Intergenic Intergenic -186087 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 233.25-26 chr5 45626733 45627187 + 0.75 NA intron (NM_021072, intron 2 of 7) L1MC4|LINE|L1 69420 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 276.75-9 chr4 72459825 72460367 + 0.75 NA intron (NM_014243, intron 3 of 21) intron (NM_014243, intron 3 of 21) 109125 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 279.75-14 chr6 61581017 61581416 + 0.75 NA intron (NR_146870, intron 14 of 15) intron (NR_146870, intron 14 of 15) 7086 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 188.75-57 chr7 14205994 14206572 + 0.75 NA intron (NM_001350717, intron 22 of 24) L2c|LINE|L2 -214858 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 213.5-50 chrX 5755536 5755993 + 0.75 NA Intergenic Intergenic -470594 NR_136577 105373156 Hs.21107 NR_136577 LOC105373156 - uncharacterized LOC105373156 ncRNA 197.5 chr1 58187204 58187520 + 0.75 NA intron (NM_001353980, intron 1 of 5) AluJr|SINE|Alu 63141 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 238.5-4 chr1 147418506 147418994 + 0.75 NA intron (NR_038423, intron 3 of 3) intron (NR_038423, intron 3 of 3) 99125 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 211.75-39 chr7 32589141 32589733 + 0.75 NA TTS (NM_015060) TTS (NM_015060) 93948 NM_015060 23080 Hs.128056 NM_015060 ENSG00000105778 AVL9 KIAA0241 AVL9 cell migration associated protein-coding 330-3 chr20 37291805 37292268 + 0.75 NA intron (NM_001003897, intron 1 of 2) L1MC3|LINE|L1 2381 NM_022077 63905 Hs.6126 NM_022077 ENSG00000101363 MANBAL - mannosidase beta like protein-coding 199.75-37 chr3 105447307 105447701 + 0.75 NA intron (NM_001243280, intron 1 of 14) AluJb|SINE|Alu 80595 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 162.25-45 chr20 16781432 16781870 + 0.75 NA Intergenic Intergenic 33298 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 269 chr1 43740665 43741185 + 0.75 NA intron (NM_001270465, intron 2 of 7) GA-rich|Low_complexity|Low_complexity -13582 NR_125986 101929592 NR_125986 ENSG00000229444 LOC101929592 - uncharacterized LOC101929592 ncRNA 176.25-3 chr1 212026321 212026683 + 0.75 NA intron (NM_015434, intron 1 of 19) intron (NM_015434, intron 1 of 19) -9051 NM_001286230 51514 Hs.656473 NM_016448 ENSG00000143476 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog protein-coding 209.5-40 chr5 87269265 87269734 + 0.75 NA intron (NM_022650, intron 1 of 24) intron (NM_022650, intron 1 of 24) 575 NM_022650 5921 Hs.664080 NM_002890 ENSG00000145715 RASA1 CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP RAS p21 protein activator 1 protein-coding 194.5-36 chr20 1101987 1102520 + 0.75 NA Intergenic L1MB7|LINE|L1 -10976 NM_178578 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 190-54 chr5 117888822 117889251 + 0.75 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 158675 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 161.5-11 chr1 217808908 217809372 + 0.75 NA intron (NM_138796, intron 9 of 10) intron (NM_138796, intron 9 of 10) -24020 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 213-33 chr7 86813173 86813669 + 0.75 NA intron (NM_001363522, intron 3 of 4) intron (NM_001363522, intron 3 of 4) 152478 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 160.5-64 chr3 113419115 113419352 + 0.75 NA intron (NR_046728, intron 2 of 5) intron (NR_046728, intron 2 of 5) 12967 NR_107043 102466253 NR_107043 ENSG00000275670 MIR8076 hsa-mir-8076 microRNA 8076 ncRNA 157-40 chr16 71881411 71881673 + 0.75 NA intron (NM_001318238, intron 2 of 7) intron (NM_001318238, intron 2 of 7) -1066 NM_001318239 55565 Hs.744055 NM_017530 ENSG00000102984 ZNF821 - zinc finger protein 821 protein-coding 256.25-15 chr5 39105698 39106260 + 0.75 NA 3' UTR (NM_001349333, exon 20 of 20) 3' UTR (NM_001349333, exon 20 of 20) -31580 NM_001285440 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 171.75-46 chr20 56612858 56613256 + 0.75 NA Intergenic Intergenic -16249 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 201-35 chr6 53820279 53820671 + 0.75 NA intron (NM_018214, intron 1 of 13) L3|LINE|CR1 25470 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 166.5-13 chr12 129285020 129285336 + 0.75 NA intron (NM_133448, intron 4 of 8) intron (NM_133448, intron 4 of 8) 76577 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 227.5-8 chr14 43793125 43793510 + 0.75 NA Intergenic Intergenic 713966 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 211-33 chr6 65442903 65443361 + 0.75 NA intron (NM_198283, intron 4 of 9) (AT)n|Simple_repeat|Simple_repeat 136672 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 152-66 chr4 166611752 166612042 + 0.75 NA Intergenic Intergenic 622529 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 165.25-14 chr15 70038523 70038859 + 0.75 NA Intergenic L1MC5|LINE|L1 40777 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 300-8 chr8 50593690 50594235 + 0.75 NA intron (NR_135797, intron 15 of 20) AluSz|SINE|Alu 429831 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 155.75-67 chr3 96796674 96797032 + 0.75 NA Intergenic Intergenic -17741 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 233.25-34 chr8 92745554 92746255 + 0.75 NA intron (NR_046114, intron 1 of 2) intron (NR_046114, intron 1 of 2) 40156 NR_046114 441369 Hs.521683 NR_046114 ENSG00000248858 FLJ46284 - uncharacterized LOC441369 ncRNA 217.5-13 chr13 66198045 66198553 + 0.75 NA Intergenic L1PA15|LINE|L1 -19951 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 166.5-93 chr8 137143902 137144202 + 0.75 NA Intergenic Intergenic 269536 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 364-2 chr11 79038148 79038764 + 0.75 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) 363653 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 149.75-76 chr5 83173265 83173529 + 0.75 NA intron (NM_001318012, intron 3 of 7) intron (NM_001318012, intron 3 of 7) 95850 NM_001318012 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 154.5-92 chr8 30639438 30639755 + 0.75 NA intron (NM_001206847, intron 1 of 2) intron (NM_001206847, intron 1 of 2) 1016 NM_001206847 100507341 Hs.659493 NM_001206847 ENSG00000253457 SMIM18 - small integral membrane protein 18 protein-coding 162.5-30 chr15 54334451 54334750 + 0.75 NA intron (NM_001329919, intron 15 of 31) intron (NM_001329919, intron 15 of 31) 321952 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 294.75-8 chr3 34847856 34848381 + 0.75 NA Intergenic Intergenic 545905 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 230.5-20 chr3 114058887 114059293 + 0.75 NA intron (NM_024638, intron 2 of 9) intron (NM_024638, intron 2 of 9) 2353 NM_001256837 79691 Hs.477162 NM_024638 ENSG00000151576 QTRT2 QTRTD1 queuine tRNA-ribosyltransferase accessory subunit 2 protein-coding 273-8 chr21 27505138 27505661 + 0.75 NA Intergenic Intergenic -216980 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 147.25-18 chr10 120895672 120895891 + 0.75 NA intron (NM_018117, intron 19 of 28) L1MC4a|LINE|L1 44419 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 148-15 chr10 74434977 74435325 + 0.75 NA intron (NM_001369124, intron 6 of 9) intron (NM_001369124, intron 6 of 9) 94173 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 170.25-38 chr2 232185796 232186301 + 0.75 NA intron (NR_046477, intron 8 of 18) AluJo|SINE|Alu 13395 NR_030288 693147 NR_030288 ENSG00000207626 MIR562 MIRN562|hsa-mir-562 microRNA 562 ncRNA 225.5-43 chr5 159868928 159869359 + 0.75 NA non-coding (NR_109891, exon 1 of 3) non-coding (NR_109891, exon 1 of 3) 2241 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 232-6 chr10 14171175 14171559 + 0.75 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 97083 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 160.25-20 chr12 125284323 125284694 + 0.75 NA intron (NM_001366854, intron 1 of 8) L1ME4b|LINE|L1 -42108 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 213.5-15 chr12 128012443 128012837 + 0.75 NA Intergenic Intergenic 14526 NR_131985 105370070 NR_131985 ENSG00000256643 LINC02441 CRAT8 long intergenic non-protein coding RNA 2441 ncRNA 237-12 chr4 133072604 133072961 + 0.75 NA Intergenic MSTA-int|LTR|ERVL-MaLR 76334 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 169.5-90 chr8 35214583 35214829 + 0.75 NA Intergenic MER52A|LTR|ERV1 -20769 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 271.75-21 chrX 17467520 17468052 + 0.75 NA intron (NM_198270, intron 1 of 7) intron (NM_198270, intron 1 of 7) 41905 NR_039925 100616249 NR_039925 ENSG00000265465 MIR4768 - microRNA 4768 ncRNA 184.75-80 chr9 74510109 74510508 + 0.75 NA intron (NM_006914, intron 1 of 9) intron (NM_006914, intron 1 of 9) -11755 NR_125791 103752585 Hs.635501 NR_125791 RORB-AS1 - RORB antisense RNA 1 ncRNA 197.25-30 chr2 147575424 147575760 + 0.75 NA Intergenic Intergenic -268925 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 161.25-50 chr3 194677405 194677903 + 0.75 NA Intergenic Intergenic -5463 NM_018385 55341 Hs.744061 NM_018385 ENSG00000041802 LSG1 - large 60S subunit nuclear export GTPase 1 protein-coding 273-14 chr6 68124412 68125125 + 0.75 NA Intergenic Intergenic 69417 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 148.25-46 chr2 78557226 78557458 + 0.75 NA intron (NR_136311, intron 2 of 2) L1MEg|LINE|L1 11811 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 268-5 chr13 37182124 37182671 + 0.75 NA Intergenic L1PA13|LINE|L1 -76733 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 209 chr1 72161859 72162405 + 0.75 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) 120407 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 181.5-17 chr12 12133271 12133584 + 0.75 NA intron (NM_002336, intron 17 of 22).2 MSTA|LTR|ERVL-MaLR 21475 NR_036262 100422885 NR_036262 ENSG00000283498 MIR1244-2 - microRNA 1244-2 ncRNA 184.75-35 chr17 78583459 78583919 + 0.75 NA Intergenic AluSz|SINE|Alu -6295 NM_173628 8632 Hs.375975 NM_003727 ENSG00000187775 DNAH17 DNAHL1|DNEL2 dynein axonemal heavy chain 17 protein-coding 369.25-5 chr5 94926988 94927746 + 0.75 NA intron (NM_001002796, intron 6 of 22) intron (NM_001002796, intron 6 of 22) 154499 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 299-2 chr10 105248879 105249480 + 0.75 NA intron (NM_014978, intron 22 of 26) intron (NM_014978, intron 22 of 26) 571154 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 208.5-46 chr4 20513978 20514341 + 0.75 NA intron (NM_001289135, intron 11 of 35) intron (NM_001289135, intron 11 of 35) -14116 NR_029631 407000 NR_029631 ENSG00000207732 MIR218-1 MIRN218-1|mir-218-1 microRNA 218-1 ncRNA 273.25-7 chr11 97798005 97798459 + 0.75 NA Intergenic MLT2B3|LTR|ERVL -1222717 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 281.25-8 chr18 13729446 13730016 + 0.75 NA intron (NM_003799, intron 1 of 11) intron (NM_003799, intron 1 of 11) 3058 NM_001308263 8731 Hs.592347 NM_003799 ENSG00000101654 RNMT CMT1|CMT1c|MET|Met|RG7MT1|cm1p|hCMT1|hMet RNA guanine-7 methyltransferase protein-coding 245.25-6 chr11 55925319 55926053 + 0.75 NA Intergenic L1ME3A|LINE|L1 10714 NM_006637 10798 Hs.533706 NM_006637 ENSG00000167825 OR5I1 HSOlf1|OLF1 olfactory receptor family 5 subfamily I member 1 protein-coding 167.5-55 chr3 3777331 3777659 + 0.75 NA intron (NR_149025, intron 5 of 5) MIRb|SINE|MIR -21936 NM_020873 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 152.25-79 chr5 51894551 51894879 + 0.75 NA Intergenic Intergenic -113316 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 183.25-74 chr8 87709927 87710438 + 0.75 NA Intergenic L1MA4|LINE|L1 163833 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 175-53 chr8 81037258 81037665 + 0.75 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 74607 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 157.25-67 chr4 47404715 47405134 + 0.75 NA intron (NM_000812, intron 7 of 8) intron (NM_000812, intron 7 of 8) 58778 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 261.75-6 chr12 9842342 9842950 + 0.75 NA intron (NR_120305, intron 3 of 3) intron (NR_120305, intron 3 of 3) 15165 NM_001366534 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 184.75-39 chr19 17739637 17739939 + 0.75 NA Intergenic AluSx1|SINE|Alu -7956 NM_001161357 23149 Hs.96485 NM_015122 ENSG00000130475 FCHO1 - FCH domain only 1 protein-coding 152.5-104 chr7 97592329 97592675 + 0.75 NA Intergenic AluY|SINE|Alu -139584 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 266.5 chr1 158928051 158928503 + 0.75 NA Intergenic Intergenic -3275 NM_152501 149628 Hs.710248 NM_152501 ENSG00000163564 PYHIN1 IFIX pyrin and HIN domain family member 1 protein-coding 171.75-96 chr9 125084541 125084933 + 0.75 NA intron (NM_173690, intron 2 of 18) intron (NM_173690, intron 2 of 18) 58791 NM_173690 286205 Hs.59504 NM_173690 ENSG00000173611 SCAI C9orf126|NET40 suppressor of cancer cell invasion protein-coding 195.75-60 chr5 101644840 101645486 + 0.75 NA Intergenic MLT1K|LTR|ERVL-MaLR 651121 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 193.25-57 chr7 49062231 49062686 + 0.75 NA Intergenic Intergenic 137911 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 162.25-50 chr3 86152676 86153067 + 0.75 NA Intergenic Intergenic -324821 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 211.25 chr1 169115597 169116023 + 0.75 NA intron (NM_001677, intron 2 of 5) intron (NM_001677, intron 2 of 5) 9120 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 158.75-73 chr7 25457736 25458077 + 0.75 NA Intergenic Intergenic 205234 NR_157828 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 169.75-7 chr1 102225874 102226315 + 0.75 NA Intergenic Intergenic -228860 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 189.5-19 chr14 57782448 57782849 + 0.75 NA intron (NR_159373, intron 1 of 10) Tigger2|DNA|TcMar-Tigger 82351 NM_001352013 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 185.75-32 chr18 72881220 72881542 + 0.75 NA TTS (NR_134648) TTS (NR_134648) 12341 NR_134647 100505797 Hs.145111 NR_134647 ENSG00000263958 LOC100505797 - myosin heavy chain IB-like ncRNA 293.25-5 chr19 14463350 14464079 + 0.75 NA exon (NM_213560, exon 10 of 22) exon (NM_213560, exon 10 of 22) 11640 NM_000955 5731 Hs.159360 NM_000955 ENSG00000160951 PTGER1 EP1 prostaglandin E receptor 1 protein-coding 162.5-6 chr1 105610903 105611234 + 0.75 NA intron (NR_125955, intron 1 of 3) intron (NR_125955, intron 1 of 3) 7867 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 262.25-3 chr10 43521669 43522155 + 0.75 NA Intergenic Intergenic 46547 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 303.25-3 chr10 60054480 60055100 + 0.75 NA intron (NM_001204403, intron 42 of 43) intron (NM_001204403, intron 42 of 43) 86226 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 145.75-50 chr2 52829707 52830079 + 0.75 NA Intergenic Intergenic -127278 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 197.5-24 chr17 33658640 33659232 + 0.75 NA intron (NM_001094, intron 1 of 9) AluSx1|SINE|Alu -125176 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 314.5-9 chr4 64502783 64503326 + 0.75 NA Intergenic AluJr|SINE|Alu -93594 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 179.5-11 chr11 16656533 16656866 + 0.75 NA intron (NM_001367872, intron 2 of 16) intron (NM_001367872, intron 2 of 16) 81778 NM_001367872 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 255.5-34 chr6 101570899 101571436 + 0.75 NA intron (NM_001166247, intron 1 of 16) intron (NM_001166247, intron 1 of 16) 172182 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 422.5-3 chr5 104749013 104750100 + 0.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -349918 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 243.25-30 chr7 145573157 145573809 + 0.75 NA Intergenic Intergenic -737430 NM_022445 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 235.75-17 chr2 163983475 163983978 + 0.75 NA Intergenic Charlie2b|DNA|hAT-Charlie -247718 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 256.75-12 chr15 82188508 82189195 + 0.75 NA intron (NM_001040610, intron 13 of 17) intron (NM_001040610, intron 13 of 17) 73677 NM_001322845 79631 Hs.459114 NM_024580 ENSG00000140598 EFL1 EFTUD1|FAM42A|HsT19294|RIA1|SDS2 elongation factor like GTPase 1 protein-coding 199.5-15 chr15 55343471 55343958 + 0.75 NA intron (NM_004855, intron 9 of 11) intron (NM_004855, intron 9 of 11) 24492 NM_004855 9488 Hs.612814 NM_004855 ENSG00000069943 PIGB GPI-MT-III|PIG-B phosphatidylinositol glycan anchor biosynthesis class B protein-coding 229.75-13 chr2 52353017 52353506 + 0.75 NA intron (NR_135237, intron 10 of 10) intron (NR_135237, intron 10 of 10) -17387 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 234.5-17 chr2 115437399 115437733 + 0.75 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 93751 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 205-4 chr10 30916333 30916884 + 0.75 NA intron (NM_182755, intron 3 of 7) L1ME3E|LINE|L1 82909 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 179.5-14 chr12 39000510 39000849 + 0.75 NA Intergenic L1M5|LINE|L1 -95088 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 213.25-21 chr2 121758893 121759316 + 0.75 NA intron (NM_001261401, intron 3 of 4) intron (NM_001261401, intron 3 of 4) 3453 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 190.25-6 chr11 27457289 27457687 + 0.75 NA intron (NM_018490, intron 1 of 17) intron (NM_018490, intron 1 of 17) -14243 NR_131169 105376671 Hs.568999 NR_131169 ENSG00000254862 LOC105376671 lnc-BBOX1-1 uncharacterized LOC105376671 ncRNA 195.5-42 chr3 96731065 96731420 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -83352 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 282.5 chr1 114321640 114322171 + 0.75 NA Intergenic L1ME5|LINE|L1 -168036 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 164.5-11 chr12 4362758 4363064 + 0.75 NA Intergenic L1MC3|LINE|L1 16801 NM_020638 8074 Hs.287370 NM_020638 ENSG00000118972 FGF23 ADHR|FGFN|HFTC2|HPDR2|HYPF|PHPTC fibroblast growth factor 23 protein-coding 204.5-17 chr2 33434735 33435171 + 0.75 NA Intergenic Intergenic -1395 NM_001349978 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 244 chr1 217575713 217576248 + 0.75 NA intron (NM_018040, intron 5 of 9) intron (NM_018040, intron 5 of 9) 55110 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 155.75-46 chr17 79762891 79763175 + 0.75 NA Intergenic L1MB7|LINE|L1 -15115 NM_005189 84733 Hs.368410 NM_005189 ENSG00000173894 CBX2 CDCA6|M33|SRXY5 chromobox 2 protein-coding 195-3 chr1 44879308 44879607 + 0.75 NA intron (NM_001166588, intron 8 of 9) intron (NM_001166588, intron 8 of 9) -36204 NM_003738 8643 Hs.591497 NM_003738 ENSG00000117425 PTCH2 PTC2 patched 2 protein-coding 151.75-89 chr6 64718725 64718958 + 0.75 NA intron (NM_001292009, intron 22 of 43) MLT1E2|LTR|ERVL-MaLR -582577 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 188.25-5 chr1 248605848 248606124 + 0.75 NA Intergenic L1PREC2|LINE|L1 -12218 NM_001004693 127069 Hs.553585 NM_001004693 ENSG00000184022 OR2T10 OR1-64 olfactory receptor family 2 subfamily T member 10 protein-coding 153.5-82 chr5 45961078 45961374 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -264846 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 155.75-88 chr5 171940024 171940378 + 0.75 NA intron (NM_033644, intron 1 of 12) L1MC4a|LINE|L1 66672 NM_033644 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 212.25-50 chr8 129346094 129346405 + 0.75 NA Intergenic L2c|LINE|L2 -105009 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 215-36 chr8 124422552 124422941 + 0.75 NA Intergenic Intergenic -28074 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 216.5-33 chr5 152761985 152762469 + 0.75 NA intron (NR_109877, intron 3 of 4) AluSg|SINE|Alu 210122 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 249.25-17 chr6 62305025 62305422 + 0.75 NA Intergenic L1MEg|LINE|L1 -18996 NM_001350622 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 182.75-55 chr5 34982821 34983086 + 0.75 NA Intergenic Intergenic 53360 NM_194283 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 229-3 chr1 189307203 189307588 + 0.75 NA Intergenic Intergenic 1168615 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 209.75-22 chr20 43366078 43366650 + 0.75 NA Intergenic Intergenic -91532 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 150.25-40 chr16 72153105 72153413 + 0.75 NA intron (NM_031293, intron 4 of 20) intron (NM_031293, intron 4 of 20) 18896 NM_031293 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 240.75-12 chr2 133024023 133024455 + 0.75 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 108682 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 378-2 chr8 124730093 124730848 + 0.75 NA Intergenic Intergenic -1963 NM_001282974 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 153.25-26 chr11 94719668 94719944 + 0.75 NA intron (NR_135096, intron 1 of 6) intron (NR_135096, intron 1 of 6) 20549 NR_135094 105369438 Hs.568921 NR_135093 ENSG00000255929 LOC105369438 - uncharacterized LOC105369438 ncRNA 169-64 chr7 30404613 30405062 + 0.75 NA TTS (NR_108081) TTS (NR_108081) 13952 NR_108081 100506516 NR_108081 ENSG00000281404 LINC01176 - long intergenic non-protein coding RNA 1176 ncRNA 173.5-2 chr1 73103304 73103847 + 0.75 NA Intergenic L1PA17|LINE|L1 -202595 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 283-12 chr9 31588265 31588672 + 0.75 NA Intergenic Intergenic -206978 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 282.25-7 chr3 103668789 103669260 + 0.75 NA Intergenic AluJr4|SINE|Alu -144908 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 185-9 chr10 59707924 59708241 + 0.75 NA intron (NM_001323981, intron 1 of 6) intron (NM_001323981, intron 1 of 6) 1809 NM_194298 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 246-13 chr7 26547707 26548186 + 0.75 NA Intergenic MER63B|DNA|hAT-Blackjack -9121 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 310.25-6 chr5 84929316 84929971 + 0.75 NA Intergenic Intergenic -544763 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 449.25 chr16 53473566 53474261 + 0.75 NA intron (NM_001323609, intron 17 of 20) L1MB5|LINE|L1 29296 NM_022476 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 217.5 chr1 111460637 111460964 + 0.75 NA intron (NM_001688, intron 6 of 6) intron (NM_001688, intron 6 of 6) 11336 NM_001688 515 Hs.514870 NM_001688 ENSG00000116459 ATP5PB ATP5F1|PIG47 ATP synthase peripheral stalk-membrane subunit b protein-coding 222.75-32 chr5 75884243 75884668 + 0.75 NA Intergenic Intergenic -167018 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 190.75-71 chr8 122427737 122428347 + 0.75 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 140602 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 204-12 chr15 72888177 72888710 + 0.75 NA Intergenic LTR16A1|LTR|ERVL -104685 NM_001365224 83440 Hs.562587 NM_031284 ENSG00000159322 ADPGK 2610017G09Rik|ADP-GK ADP dependent glucokinase protein-coding 236.25-11 chr12 14912813 14913329 + 0.75 NA TTS (NM_001300784) TTS (NM_001300784) 16054 NM_001300784 121506 Hs.162143 NM_152321 ENSG00000139055 ERP27 C12orf46|PDIA8 endoplasmic reticulum protein 27 protein-coding 173.75-3 chr1 100610677 100610967 + 0.75 NA Intergenic Intergenic 36182 NR_038914 100128787 Hs.536050 NR_038914 LINC01349 - long intergenic non-protein coding RNA 1349 ncRNA 210.5-45 chr8 15641753 15642332 + 0.75 NA intron (NM_001356429, intron 2 of 10) L1MA10|LINE|L1 101779 NM_001356429 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 242.75-19 chr2 225984724 225985143 + 0.75 NA Intergenic L1MB7|LINE|L1 -157861 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 216.5-37 chr7 7744679 7745042 + 0.75 NA intron (NM_001302350, intron 3 of 4) L1MB8|LINE|L1 -26253 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 204.5-37 chr6 8841096 8841519 + 0.75 NA Intergenic Intergenic 189098 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 155.75-86 chr5 145371655 145371986 + 0.75 NA Intergenic L1PA8A|LINE|L1 463522 NM_138492 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 201.5-3 chr1 217716131 217716676 + 0.75 NA intron (NM_138796, intron 5 of 10) MamRTE1|LINE|RTE-BovB 68717 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 152.5-19 chr12 41238300 41238702 + 0.75 NA intron (NM_001164595, intron 3 of 9) L1PA11|LINE|L1 50181 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 244.75-7 chr14 62879756 62880107 + 0.75 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 165527 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 179.25-4 chr1 85448691 85449103 + 0.75 NA intron (NM_001134445, intron 2 of 6) intron (NM_001134445, intron 2 of 6) 16262 NM_012137 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 211-39 chr9 76683833 76684309 + 0.75 NA intron (NM_001308048, intron 9 of 17) L1MA7|LINE|L1 8344 NM_001308049 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 185.5-31 chr15 58816951 58817439 + 0.75 NA intron (NM_001040450, intron 4 of 8) L1ME3B|LINE|L1 45893 NM_001040450 54629 Hs.591122 NM_019092 ENSG00000128923 MINDY2 FAM63B MINDY lysine 48 deubiquitinase 2 protein-coding 222.25-40 chr6 38826290 38826827 + 0.75 NA intron (NM_001371, intron 28 of 91) intron (NM_001371, intron 28 of 91) 111247 NM_001206927 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 155.75-13 chr10 64896980 64897310 + 0.75 NA Intergenic L1PBa|LINE|L1 27373 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 219.25-33 chr3 114682152 114682780 + 0.75 NA intron (NM_001348803, intron 6 of 13) intron (NM_001348803, intron 6 of 13) -57521 NM_001164346 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 176-70 chr9 37192105 37192504 + 0.75 NA intron (NM_001289120, intron 2 of 8) L3|LINE|CR1 71706 NM_001289121 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 242.75-8 chr14 65556568 65557080 + 0.75 NA intron (NM_004480, intron 2 of 9) MIR|SINE|MIR 85722 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 158.75-74 chr7 48467531 48467863 + 0.75 NA intron (NM_152701, intron 44 of 61) L2c|LINE|L2 296239 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 173.5-71 chr6 69829498 69829872 + 0.75 NA Intergenic Intergenic -32675 NM_018368 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 180.25-50 chr4 36124805 36125426 + 0.75 NA intron (NR_146894, intron 21 of 32) intron (NR_146894, intron 21 of 32) 118824 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 288.5-8 chr2 222698168 222698785 + 0.75 NA intron (NM_058165, intron 5 of 5) intron (NM_058165, intron 5 of 5) 26818 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 163.75-78 chrX 54272129 54272549 + 0.75 NA intron (NM_001002838, intron 10 of 22) AluJo|SINE|Alu 85666 NM_020922 65267 Hs.92423 NM_020922 ENSG00000196632 WNK3 PRKWNK3 WNK lysine deficient protein kinase 3 protein-coding 241-11 chr16 60391443 60391852 + 0.75 NA Intergenic MIR3|SINE|MIR -31854 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 155.25-84 chr7 90789163 90789508 + 0.75 NA intron (NM_012395, intron 3 of 13) L1ME4b|LINE|L1 79519 NM_001287136 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 238-16 chr5 76990542 76990952 + 0.75 NA Intergenic Intergenic 37702 NM_001882 1393 Hs.115617 NM_001882 ENSG00000145708 CRHBP CRF-BP|CRFBP corticotropin releasing hormone binding protein protein-coding 201-33 chr5 65842563 65843055 + 0.75 NA Intergenic MIR3|SINE|MIR -83745 NM_001006600 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 175.25-16 chr12 89016503 89016877 + 0.75 NA intron (NR_038385, intron 1 of 2) L1MB5|LINE|L1 3002 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 160-83 chr8 80100185 80100564 + 0.75 NA intron (NM_001025253, intron 1 of 7) intron (NM_001025253, intron 1 of 7) -19543 NM_001287142 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 177.75-33 chr2 175773361 175773708 + 0.75 NA Intergenic AluJr|SINE|Alu 228733 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 255-10 chr4 55336935 55337503 + 0.75 NA Intergenic AluSg|SINE|Alu -9023 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 170.25-43 chr3 83284576 83285039 + 0.75 NA Intergenic Intergenic 1298665 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 302.25-11 chr4 165164955 165165706 + 0.75 NA Intergenic MER90a|LTR|ERV1 -42231 NM_007246 11275 Hs.388668 NM_007246 ENSG00000109466 KLHL2 ABP-KELCH|MAV|MAYVEN kelch like family member 2 protein-coding 157-51 chr2 160896963 160897438 + 0.75 NA Intergenic AluJo|SINE|Alu -239755 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 243.5-17 chr4 136501184 136501711 + 0.75 NA Intergenic L1M5|LINE|L1 -587767 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 286.25-7 chr5 42163653 42164199 + 0.75 NA intron (NR_104636, intron 1 of 3) L1MA4A|LINE|L1 11419 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 152-76 chr5 123661037 123661376 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR 115789 NM_001270572 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 163.5-23 chr13 72567619 72567888 + 0.75 NA Intergenic Intergenic 159876 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 171-36 chr2 192469874 192470154 + 0.75 NA Intergenic Intergenic -275081 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 158.75-56 chr3 196837565 196838033 + 0.75 NA Intergenic Intergenic -30057 NM_001308045 205564 Hs.240770 NM_152699 ENSG00000119231 SENP5 - SUMO specific peptidase 5 protein-coding 175.5-76 chr5 23904045 23904559 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -47046 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 243-19 chr6 20454121 20454702 + 0.75 NA intron (NM_001243076, intron 1 of 6) intron (NM_001243076, intron 1 of 6) 50732 NM_001243076 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 204.25-33 chr3 183480123 183480592 + 0.75 NA Intergenic AluSc|SINE|Alu 26543 NR_145763 109617007 NR_145763 ENSG00000199363 SNORA63E - small nucleolar RNA, H/ACA box 63E snoRNA 147.5-23 chr12 122390742 122391089 + 0.75 NA intron (NM_198240, intron 1 of 23) intron (NM_198240, intron 1 of 23) -4627 NR_045382 100507066 Hs.624253 NR_045382 CLIP1-AS1 - CLIP1 antisense RNA 1 ncRNA 265.25-12 chr5 129546248 129546831 + 0.75 NA intron (NM_133638, intron 6 of 22) L1MEd|LINE|L1 -85850 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 175-57 chr9 108918584 108919115 + 0.75 NA exon (NM_003640, exon 8 of 37) exon (NM_003640, exon 8 of 37) 15275 NM_001330749 8518 Hs.494738 NM_003640 ENSG00000070061 ELP1 DYS|FD|IKAP|IKBKAP|IKI3|TOT1 elongator complex protein 1 protein-coding 183.5-72 chr8 112543164 112543497 + 0.75 NA intron (NM_001363185, intron 25 of 66) L1MB1|LINE|L1 -100163 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 229.75-5 chr11 19532196 19532569 + 0.75 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -8304 NR_033989 399876 Hs.132600 NR_033989 ENSG00000254622 NAV2-AS4 - NAV2 antisense RNA 4 ncRNA 189.25-11 chr11 29589204 29589747 + 0.75 NA Intergenic Intergenic -4938 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 166.75-93 chr8 116885114 116885523 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR -10452 NM_006265 5885 Hs.81848 NM_006265 ENSG00000164754 RAD21 CDLS4|HR21|HRAD21|MCD1|MGS|NXP1|SCC1|hHR21 RAD21 cohesin complex component protein-coding 217-11 chr18 6297915 6298408 + 0.75 NA intron (NM_001365769, intron 4 of 16) L1ME4a|LINE|L1 41417 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 384.75-3 chr2 178852450 178853051 + 0.75 NA intron (NM_173648, intron 20 of 23) intron (NM_173648, intron 20 of 23) -45327 NM_133432 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 236.5-21 chr3 159347125 159347516 + 0.75 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 64674 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 195.25-30 chr2 188591825 188592325 + 0.75 NA intron (NM_001252668, intron 12 of 12) intron (NM_001252668, intron 12 of 12) 198048 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 180.75-4 chr1 33113457 33113861 + 0.75 NA intron (NR_146648, intron 10 of 11) MIRc|SINE|MIR 31481 NM_001301826 113451 Hs.101807 NM_052998 ENSG00000142920 AZIN2 ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp antizyme inhibitor 2 protein-coding 188.5-2 chr1 67238936 67239412 + 0.75 NA intron (NM_144701, intron 8 of 10) intron (NM_144701, intron 8 of 10) -68190 NR_047584 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 214-6 chr10 17434782 17435183 + 0.75 NA intron (NM_001004470, intron 2 of 7) intron (NM_001004470, intron 2 of 7) 19613 NR_144322 338596 Hs.677766 NM_001004470 ENSG00000148488 ST8SIA6 SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding 224.75-33 chr5 107020293 107020853 + 0.75 NA Intergenic Intergenic -9559 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 170.75-73 chr9 93048926 93049390 + 0.75 NA Intergenic Intergenic -9530 NM_001287006 203328 Hs.88417 NM_145006 ENSG00000157303 SUSD3 - sushi domain containing 3 protein-coding 277.75-17 chr5 123842283 123843018 + 0.75 NA Intergenic L1PA15|LINE|L1 297233 NM_001270572 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 176.75-55 chr3 76608010 76608445 + 0.75 NA Intergenic Intergenic -431872 NM_002942 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 152-7 chr10 51196929 51197155 + 0.75 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -102531 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 232.75-22 chr3 148543766 148544241 + 0.75 NA Intergenic Intergenic -153868 NM_000685 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 163.5-116 chr8 118413646 118413919 + 0.75 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -207219 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 205.25-25 chr3 15420180 15420504 + 0.75 NA intron (NM_001301790, intron 2 of 4) intron (NM_001301790, intron 2 of 4) 7202 NM_001330662 131965 Hs.149487 NM_152396 ENSG00000206562 METTL6 - methyltransferase like 6 protein-coding 219.75-30 chr3 119727085 119727727 + 0.75 NA intron (NM_033364, intron 7 of 17) intron (NM_033364, intron 7 of 17) 24384 NM_001320318 89876 Hs.341906 NM_033364 ENSG00000183833 MAATS1 AAT1|AAT1alpha|C3orf15|CFAP91|CaM-IP2|SPATA26 MYCBP associated and testis expressed 1 protein-coding 192.5-55 chr7 46234331 46234648 + 0.75 NA Intergenic L1MC3|LINE|L1 -313217 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 172-27 chr15 99155248 99155675 + 0.75 NA intron (NR_109947, intron 11 of 12) L1M5|LINE|L1 50381 NM_145728 23336 Hs.207106 NM_015286 ENSG00000182253 SYNM DMN|SYN synemin protein-coding 207-30 chr4 43490163 43490510 + 0.75 NA intron (NR_146993, intron 1 of 2) intron (NR_146993, intron 1 of 2) 2207 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 235.5-7 chr12 14996258 14996989 + 0.75 NA Intergenic L1MA8|LINE|L1 -5210 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 216.5-45 chr8 86683786 86684095 + 0.75 NA intron (NM_019098, intron 3 of 17) L1MD2|LINE|L1 59735 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 161.75-39 chr20 49103203 49103572 + 0.75 NA Intergenic Intergenic 57075 NM_001362762 1434 Hs.90073 NM_001316 ENSG00000124207 CSE1L CAS|CSE1|XPO2 chromosome segregation 1 like protein-coding 184-34 chr21 22526788 22527333 + 0.75 NA Intergenic L1M5|LINE|L1 428443 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 264.5-11 chr18 23873540 23874147 + 0.75 NA intron (NM_000227, intron 1 of 37) intron (NM_000227, intron 1 of 37) 823 NM_000227 3909 Hs.436367 NM_000227 ENSG00000053747 LAMA3 BM600|E170|LAMNA|LOCS laminin subunit alpha 3 protein-coding 263 chr1 180785700 180786342 + 0.75 NA intron (NR_137330, intron 2 of 12) intron (NR_137330, intron 2 of 12) -126876 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 181-19 chr16 73716269 73716551 + 0.75 NA Intergenic Intergenic 329605 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 201.25-23 chr2 77344416 77344730 + 0.75 NA intron (NR_146416, intron 1 of 1) L1MD1|LINE|L1 177803 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 206-11 chr16 48277708 48278300 + 0.75 NA intron (NM_031490, intron 8 of 14) intron (NM_031490, intron 8 of 14) -30465 NM_001370497 85320 Hs.652267 NM_032583 ENSG00000121270 ABCC11 EWWD|MRP8|WW ATP binding cassette subfamily C member 11 protein-coding 163.5-90 chr5 61878814 61879123 + 0.75 NA Intergenic MIRb|SINE|MIR -143270 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 202.5-56 chr7 41056955 41057353 + 0.75 NA Intergenic Intergenic -44450 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 168-69 chr9 37179888 37180328 + 0.75 NA intron (NM_001289120, intron 2 of 8) L2a|LINE|L2 59510 NM_001289121 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 183.75-14 chr11 38923121 38923636 + 0.75 NA Intergenic MLT2A2|LTR|ERVL 274520 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 163.25-39 chr2 43587054 43587349 + 0.75 NA intron (NM_001083953, intron 4 of 37) L2a|LINE|L2 8773 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 221.75-39 chrX 137205328 137205800 + 0.75 NA Intergenic L1PA17|LINE|L1 -173890 NM_054021 83550 Hs.350569 NM_054021 ENSG00000165370 GPR101 GPCR6|PAGH2|PITA2 G protein-coupled receptor 101 protein-coding 181.25-61 chr8 139571668 139571971 + 0.75 NA Intergenic Intergenic 131304 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 301.25-3 chr13 72166182 72166741 + 0.75 NA Intergenic Intergenic -299257 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 181.5-69 chr8 88867727 88868055 + 0.75 NA Intergenic Intergenic -540408 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 283-2 chr12 22181437 22181896 + 0.75 NA Intergenic L1MC1|LINE|L1 135448 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 308.75-10 chr6 140462073 140462773 + 0.75 NA Intergenic Intergenic -221391 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 154.25-21 chr11 105788137 105788524 + 0.75 NA intron (NR_046356, intron 3 of 16) L1PB4|LINE|L1 177624 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 192.25-4 chr1 148356045 148356582 + 0.75 NA Intergenic MER39|LTR|ERV1 6220 NR_104082 101954273 NR_104082 ENSG00000207340 RNVU1-1 RNU1-10P|RNU1-53|RNU1P10|RNVU1-10|U1.4|U1P14|vU1.1|vU1.10 RNA, variant U1 small nuclear 1 snRNA 177.75-19 chr14 83659749 83660200 + 0.75 NA Intergenic Intergenic 1017342 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 197.75-7 chr10 53268779 53269323 + 0.75 NA Intergenic L1PA16|LINE|L1 -497351 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 177.75-69 chr7 138967965 138968301 + 0.75 NA intron (NM_020910, intron 1 of 19) L1PA10|LINE|L1 13256 NM_020910 57670 Hs.605380 NM_020910 ENSG00000122778 KIAA1549 - KIAA1549 protein-coding 247.25-7 chr14 83183063 83183829 + 0.75 NA Intergenic Intergenic 540814 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 197.25-28 chr2 123081833 123082217 + 0.75 NA Intergenic Intergenic -8544 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 290.5-11 chr3 96156328 96156973 + 0.75 NA Intergenic L1PA12|LINE|L1 -203314 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 214.75-46 chr7 24582329 24582749 + 0.75 NA intron (NM_001303037, intron 1 of 11) intron (NM_001303037, intron 1 of 11) 9087 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 347.25 chr1 34054617 34055394 + 0.75 NA intron (NM_052896, intron 2 of 69) L1ME3E|LINE|L1 110269 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 363.75-6 chr5 5105281 5105986 + 0.75 NA Intergenic Intergenic -27322 NR_134266 105374631 Hs.570964 NR_134266 ENSG00000250529 LINC02121 - long intergenic non-protein coding RNA 2121 ncRNA 199.25-32 chr2 60953636 60954123 + 0.75 NA intron (NM_144709, intron 14 of 17) L1MB8|LINE|L1 63333 NM_001322124 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridine synthase 10 protein-coding 214.25-16 chr2 75983576 75984149 + 0.75 NA Intergenic Intergenic -272947 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 155.5-42 chr2 19893742 19894058 + 0.75 NA Intergenic Intergenic 8083 NM_001008237 130502 Hs.591547 NM_001008237 ENSG00000183891 TTC32 - tetratricopeptide repeat domain 32 protein-coding 179.5-86 chr9 102164836 102165181 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 -354629 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 159-2 chr1 53446710 53447158 + 0.75 NA Intergenic Intergenic -6914 NR_002314 163742 Hs.99394 NR_002314 ENSG00000236253 SLC25A3P1 - solute carrier family 25 member 3 pseudogene 1 pseudo 206-30 chr6 114432774 114433124 + 0.75 NA Intergenic Intergenic -370072 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 175.75-38 chr20 42852306 42852655 + 0.75 NA intron (NM_133170, intron 2 of 31) intron (NM_133170, intron 2 of 31) -116263 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 278.5-3 chr14 44939731 44940239 + 0.75 NA intron (NM_017658, intron 2 of 4) MSTD|LTR|ERVL-MaLR 21500 NM_001308112 54813 Hs.550906 NM_017658 ENSG00000179454 KLHL28 BTBD5 kelch like family member 28 protein-coding 213.5-24 chr2 98261684 98262091 + 0.75 NA intron (NM_001345864, intron 15 of 21) L1MB5|LINE|L1 -84268 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 182.75-62 chr6 56233034 56233372 + 0.75 NA intron (NM_001318751, intron 1 of 30) intron (NM_001318751, intron 1 of 30) 14377 NR_134850 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 197.25-11 chr10 56374084 56374741 + 0.75 NA Intergenic Intergenic -13139 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 203.75-21 chr3 52481896 52482378 + 0.75 NA TTS (NM_001276293) TTS (NM_001276293) -13201 NM_015136 23166 Hs.301989 NM_015136 ENSG00000010327 STAB1 CLEVER-1|FEEL-1|FELE-1|FEX1|SCARH2|STAB-1 stabilin 1 protein-coding 154.75-3 chr1 54507277 54507679 + 0.75 NA Intergenic Intergenic -40750 NM_015547 26027 Hs.745173 NM_015547 ENSG00000162390 ACOT11 BFIT|STARD14|THEA|THEM1 acyl-CoA thioesterase 11 protein-coding 168.5-79 chr4 173452836 173453155 + 0.75 NA intron (NM_001329597, intron 2 of 3) LTR40b|LTR|ERVL -53879 NM_007281 11341 Hs.7122 NM_007281 ENSG00000164106 SCRG1 SCRG-1 stimulator of chondrogenesis 1 protein-coding 182.75-66 chr7 20726745 20727146 + 0.75 NA intron (NM_178559, intron 12 of 18) intron (NM_178559, intron 12 of 18) 59941 NM_198956 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 198.5-8 chr10 81338451 81338835 + 0.75 NA Intergenic Intergenic -536551 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 247 chr1 89258351 89258688 + 0.75 NA TTS (NM_052942) TTS (NM_052942) 14341 NM_052942 115362 Hs.513726 NM_052942 ENSG00000154451 GBP5 GBP-5 guanylate binding protein 5 protein-coding 180.75-24 chr17 63215218 63215534 + 0.75 NA intron (NM_025185, intron 6 of 25) MER21C|LTR|ERVL 224891 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 155.25-34 chr18 2225404 2225706 + 0.75 NA Intergenic L1ME3A|LINE|L1 345950 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 202.5-51 chr5 119215105 119215487 + 0.75 NA intron (NM_001290321, intron 34 of 43) intron (NM_001290321, intron 34 of 43) -53463 NM_001077654 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 145.75-92 chr5 8976441 8976811 + 0.75 NA Intergenic Intergenic 77269 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 184.25-41 chr22 39972201 39972796 + 0.75 NA 3' UTR (NM_004810, exon 8 of 8) 3' UTR (NM_004810, exon 8 of 8) -22456 NM_138435 113828 Hs.26192 NM_138435 ENSG00000133477 FAM83F - family with sequence similarity 83 member F protein-coding 245-11 chr2 48796426 48796964 + 0.75 NA Intergenic L2c|LINE|L2 -40971 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 181-42 chr6 154783089 154783338 + 0.75 NA intron (NM_014892, intron 3 of 19) intron (NM_014892, intron 3 of 19) 49835 NM_001286189 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 310.25-2 chr14 41647347 41647988 + 0.75 NA intron (NM_001346173, intron 1 of 4) intron (NM_001346173, intron 1 of 4) 40811 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 278-5 chr2 83881302 83882080 + 0.75 NA Intergenic Intergenic 358877 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 166.5-23 chr14 70906666 70907005 + 0.75 NA promoter-TSS (NM_001308160) promoter-TSS (NM_001308160) -624 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 191.25-43 chr20 39099087 39099555 + 0.75 NA Intergenic Intergenic 125427 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 196.75-56 chr8 117461882 117462432 + 0.75 NA Intergenic Intergenic -58556 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 184.25-8 chr1 220872357 220872768 + 0.75 NA intron (NR_046901, intron 1 of 2) MLT2B2|LTR|ERVL -6881 NM_021958 3142 Hs.74870 NM_021958 ENSG00000136630 HLX HB24|HLX1 H2.0 like homeobox protein-coding 203.75-55 chrX 25649858 25650265 + 0.75 NA Intergenic Intergenic -488282 NM_173699 286514 Hs.350683 NM_173699 ENSG00000176774 MAGEB18 - MAGE family member B18 protein-coding 178.25-38 chr3 66179772 66180049 + 0.75 NA intron (NM_173471, intron 1 of 10) intron (NM_173471, intron 1 of 10) -40832 NR_028475 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 206-31 chr6 124228562 124228845 + 0.75 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -54302 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 214.5-26 chr2 228053794 228054112 + 0.75 NA intron (NM_030623, intron 3 of 10) HAL1|LINE|L1 127692 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 180.5-27 chr16 70411778 70412095 + 0.75 NA intron (NM_006927, intron 1 of 6) AluSp|SINE|Alu 27164 NM_006927 6483 Hs.368611 NM_006927 ENSG00000157350 ST3GAL2 Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 protein-coding 189.75-26 chr15 26305664 26306091 + 0.75 NA Intergenic THE1C-int|LTR|ERVL-MaLR 190064 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 213-19 chr3 70443323 70443669 + 0.75 NA Intergenic L1MA3|LINE|L1 -130858 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 156.5-95 chr6 52108966 52109280 + 0.75 NA Intergenic Intergenic -21510 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 184.5-55 chr3 100731102 100731689 + 0.75 NA intron (NM_001007565, intron 4 of 7) intron (NM_001007565, intron 4 of 7) 21853 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 153.75-14 chr14 29830197 29830495 + 0.75 NA intron (NM_001330069, intron 1 of 18) intron (NM_001330069, intron 1 of 18) 96750 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 195.5-40 chr3 59157416 59157893 + 0.75 NA Intergenic Intergenic -107622 NM_001351533 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 175.5-25 chr14 32932122 32932451 + 0.75 NA Intergenic Intergenic -6593 NM_173159 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 386.5-2 chr2 106569276 106569945 + 0.75 NA Intergenic Intergenic 82246 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 152-72 chr5 50984431 50984695 + 0.75 NA Intergenic Intergenic -14376 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 150-100 chrX 106761756 106762017 + 0.75 NA intron (NM_194463, intron 1 of 6) L2c|LINE|L2 35185 NM_194463 79589 Hs.496542 NM_024539 ENSG00000133135 RNF128 GRAIL ring finger protein 128 protein-coding 238-18 chr6 69487763 69488348 + 0.75 NA Intergenic Intergenic 308411 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 169.25-64 chr9 80672770 80673053 + 0.75 NA Intergenic Intergenic 697888 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 157.25-73 chr4 104682225 104682527 + 0.75 NA intron (NR_125926, intron 8 of 9) intron (NR_125926, intron 8 of 9) -187482 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 287.25-6 chr3 145465901 145466377 + 0.75 NA Intergenic L1PA12|LINE|L1 603046 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 274.25-2 chr12 46014448 46015038 + 0.75 NA Intergenic L1PB2|LINE|L1 -24169 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 297.75-10 chr3 180130470 180131152 + 0.75 NA Intergenic MIR|SINE|MIR -93874 NM_001256753 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 158-23 chr15 63125254 63125727 + 0.75 NA intron (NM_032857, intron 2 of 5) intron (NM_032857, intron 2 of 5) 3629 NM_032857 114294 Hs.410388 NM_032857 ENSG00000103642 LACTB G24|MRPL56 lactamase beta protein-coding 254.75-7 chr13 27407361 27408062 + 0.75 NA Intergenic HAL1|LINE|L1 -16908 NM_002097 2971 Hs.445977 NM_002097 ENSG00000122034 GTF3A AP2|TFIIIA general transcription factor IIIA protein-coding 239.75-18 chr4 137855932 137856388 + 0.75 NA Intergenic Intergenic -232854 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 194.5-8 chr10 69722009 69722432 + 0.75 NA Intergenic Intergenic -79686 NM_001368882 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 197.5-35 chr2 133233182 133233641 + 0.75 NA intron (NM_207481, intron 4 of 17) intron (NM_207481, intron 4 of 17) -32784 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 228.75-28 chrX 78499153 78499642 + 0.75 NA Intergenic Intergenic 159931 NM_152694 203430 Hs.134873 NM_152694 ENSG00000179300 RTL3 Mar3|Mart3|SIRH9|ZCCHC5|ZHC5 retrotransposon Gag like 3 protein-coding 366.25-6 chr3 4866973 4867521 + 0.75 NA Intergenic Intergenic 39254 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 235.5-38 chr8 72726022 72726772 + 0.75 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) -5648 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 222.75-14 chr15 99653061 99653530 + 0.75 NA intron (NM_001365201, intron 4 of 11) intron (NM_001365201, intron 4 of 11) 20317 NM_001130928 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 173.75-6 chr1 187251350 187251651 + 0.75 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) 158658 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 172.5-47 chr3 97651206 97651545 + 0.75 NA intron (NM_001080448, intron 14 of 17) intron (NM_001080448, intron 14 of 17) -113146 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 186.75-40 chr2 55431118 55431502 + 0.75 NA Intergenic Intergenic -11454 NM_018084 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL coiled-coil domain containing 88A protein-coding 319-4 chr2 44935331 44935796 + 0.75 NA intron (NR_147194, intron 1 of 2) CpG-15975 3325 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 186.25 chr1 50374704 50375030 + 0.75 NA Intergenic L1PB1|LINE|L1 48576 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 274.25-18 chr8 126912832 126913337 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR -100070 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 261.75-10 chr2 193665030 193665507 + 0.75 NA Intergenic MIR|SINE|MIR -679001 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 161.25-12 chr11 69811292 69811665 + 0.75 NA intron (NM_005247, intron 2 of 2) AluSq2|SINE|Alu 7938 NM_005247 2248 Hs.37092 NM_005247 ENSG00000186895 FGF3 HBGF-3|INT2 fibroblast growth factor 3 protein-coding 281.5-28 chr7 83136200 83137076 + 0.75 NA intron (NM_033026, intron 2 of 24) intron (NM_033026, intron 2 of 24) 26246 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 168.75-58 chr20 11625050 11625444 + 0.75 NA Intergenic MLT1F|LTR|ERVL-MaLR 245468 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 271.75-14 chr3 182661746 182662198 + 0.75 NA Intergenic Intergenic -131532 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 233.25-17 chr2 143038497 143038891 + 0.75 NA intron (NM_001199241, intron 13 of 14) intron (NM_001199241, intron 13 of 14) -90725 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 180.25-5 chr1 114236065 114236467 + 0.75 NA Intergenic Intergenic -82397 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 468 chr1 88672322 88673396 + 0.75 NA intron (NR_110682, intron 1 of 3) intron (NR_110682, intron 1 of 3) -11285 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 175.75-36 chr2 226041184 226041506 + 0.75 NA Intergenic Intergenic -101449 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 192-9 chr10 11523141 11523523 + 0.75 NA intron (NM_014688, intron 4 of 14) intron (NM_014688, intron 4 of 14) 8948 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 193.75-28 chr17 52372063 52372407 + 0.75 NA Intergenic L1M5|LINE|L1 -18287 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 199.75-63 chr9 116283747 116284165 + 0.75 NA intron (NM_002581, intron 9 of 21) intron (NM_002581, intron 9 of 21) 116650 NR_103711 493913 Hs.728832 NR_103711 ENSG00000256040 PAPPA-AS1 DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105 PAPPA antisense RNA 1 ncRNA 176.5-89 chr8 110891240 110891731 + 0.75 NA Intergenic HERVL18-int|LTR|ERVL 135948 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 163.5-14 chr10 63800952 63801300 + 0.75 NA Intergenic L1ME4a|LINE|L1 -279236 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 353-4 chr22 33905240 33905797 + 0.75 NA intron (NM_001362949, intron 1 of 15) Charlie2b|DNA|hAT-Charlie 14910 NM_004737 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 232.75-4 chr11 42705144 42705558 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR -451661 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 190-68 chr8 73662230 73662540 + 0.75 NA intron (NM_001164383, intron 1 of 9) L1ME1|LINE|L1 84455 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 149-70 chr3 192682502 192682916 + 0.75 NA intron (NM_004113, intron 2 of 5) MER21C|LTR|ERVL 44832 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 195-29 chr20 367251 367553 + 0.75 NA Intergenic MIRb|SINE|MIR -13227 NM_021158 57761 Hs.516826 NM_021158 ENSG00000101255 TRIB3 C20orf97|NIPK|SINK|SKIP3|TRB3 tribbles pseudokinase 3 protein-coding 231.25-30 chr5 147548 147998 + 0.75 NA intron (NM_052909, intron 6 of 19) L1MB3|LINE|L1 -43722 NM_001080478 389257 Hs.103142 NM_001080478 ENSG00000185028 LRRC14B - leucine rich repeat containing 14B protein-coding 290.75-4 chr2 42114994 42115735 + 0.75 NA Intergenic MLT1O|LTR|ERVL-MaLR -53989 NM_001145076 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 EMAP like 4 protein-coding 151.5-12 chr10 62170341 62170732 + 0.75 NA Intergenic Charlie1a|DNA|hAT-Charlie 98308 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 150-67 chr4 62492556 62492954 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -330990 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 250.5 chr1 28762408 28762812 + 0.75 NA intron (NM_001173128, intron 5 of 5) intron (NM_001173128, intron 5 of 5) 25670 NM_001172828 51441 Hs.532286 NM_016258 ENSG00000198492 YTHDF2 CAHL|HGRG8|NY-REN-2 YTH N6-methyladenosine RNA binding protein 2 protein-coding 155-38 chr18 7276435 7276888 + 0.75 NA Intergenic Intergenic 45557 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 206-26 chr5 65686751 65687289 + 0.75 NA intron (NM_019072, intron 5 of 10) intron (NM_019072, intron 5 of 10) 35089 NM_019072 54557 Hs.482301 NM_019072 ENSG00000197860 SGTB SGT2 small glutamine rich tetratricopeptide repeat containing beta protein-coding 147-96 chr6 19572015 19572383 + 0.75 NA Intergenic Intergenic 122378 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 175-35 chr4 170073970 170074323 + 0.75 NA intron (NM_182662, intron 5 of 13) MLT1I|LTR|ERVL-MaLR 15810 NM_016228 51166 Hs.529735 NM_016228 ENSG00000109576 AADAT KAT2|KATII|KYAT2 aminoadipate aminotransferase protein-coding 223-13 chr17 39397257 39397578 + 0.75 NA intron (NM_001370209, intron 1 of 13) intron (NM_001370209, intron 1 of 13) 4209 NM_032875 84961 Hs.462946 NM_032875 ENSG00000108306 FBXL20 Fbl2|Fbl20 F-box and leucine rich repeat protein 20 protein-coding 167-41 chr2 59734205 59734537 + 0.75 NA Intergenic Intergenic 516663 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 250.75-18 chr2 211039618 211040239 + 0.75 NA Intergenic Intergenic 422357 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 308.5-3 chr3 131201205 131201691 + 0.75 NA intron (NM_001353043, intron 14 of 17) intron (NM_001353043, intron 14 of 17) -160397 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 278.25-17 chr7 52683010 52683503 + 0.75 NA Intergenic Intergenic -352377 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 213 chr1 93706879 93707247 + 0.75 NA intron (NM_001261408, intron 2 of 13) AluSq2|SINE|Alu -25226 NM_003567 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 AND-34|NSP2|SH2D3B BCAR3 adaptor protein, NSP family member protein-coding 160.75-53 chr18 75402447 75402692 + 0.75 NA Intergenic L2c|LINE|L2 25134 NM_001037331 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 146.75-19 chr11 26130815 26131177 + 0.75 NA Intergenic L1PB1|LINE|L1 -58127 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 207.25-49 chr6 63818014 63818363 + 0.75 NA intron (NR_157848, intron 1 of 1) Charlie4a|DNA|hAT-Charlie 11352 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 226.75-16 chr2 122625576 122626010 + 0.75 NA Intergenic Intergenic 447688 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 226.25-16 chr21 16199259 16199836 + 0.75 NA intron (NR_136543, intron 1 of 4) intron (NR_136543, intron 1 of 4) 5168 NR_136543 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 202.25-24 chr17 42855531 42855999 + 0.75 NA intron (NR_102422, intron 3 of 3) intron (NR_102422, intron 3 of 3) 2522 NM_001277732 8639 Hs.198241 NM_003734 ENSG00000131471 AOC3 HPAO|SSAO|VAP-1|VAP1 amine oxidase copper containing 3 protein-coding 157.75-82 chr4 154533745 154534013 + 0.75 NA Intergenic Intergenic 16521 NM_002669 5356 Hs.249996 NM_002669 ENSG00000171566 PLRG1 Cwc1|PRL1|PRP46|PRPF46|TANGO4 pleiotropic regulator 1 protein-coding 202.75-47 chr8 126870992 126871331 + 0.75 NA Intergenic MIR|SINE|MIR -141993 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 171.5-69 chr3 181343236 181343530 + 0.75 NA intron (NR_075091, intron 3 of 7) L2a|LINE|L2 99103 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 227.25-26 chr6 100315973 100316651 + 0.75 NA Intergenic Intergenic 147363 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 223.5-37 chr6 130082767 130083352 + 0.75 NA intron (NM_001007102, intron 13 of 21) intron (NM_001007102, intron 13 of 21) 63415 NM_001346550 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 176.5-47 chr2 235884236 235884591 + 0.75 NA intron (NM_001037131, intron 10 of 17) MER2|DNA|TcMar-Tigger 283973 NM_001301687 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 153.25-114 chr8 117742776 117743098 + 0.75 NA Intergenic AluSx1|SINE|Alu 177976 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 220.75-26 chr3 81437223 81437866 + 0.75 NA Intergenic Intergenic 324101 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 186.25-8 chr12 12806612 12806973 + 0.75 NA Intergenic A-rich|Low_complexity|Low_complexity -6554 NM_016355 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 208.75-23 chr3 115250239 115250665 + 0.75 NA Intergenic L1ME3G|LINE|L1 -103164 NM_001348800 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 212.5-21 chr19 32809998 32810515 + 0.75 NA exon (NM_001366102, exon 23 of 33) exon (NM_001366102, exon 23 of 33) 59511 NM_014270 11136 Hs.743345 NM_014270 ENSG00000021488 SLC7A9 BAT1|CSNU3 solute carrier family 7 member 9 protein-coding 229.5-11 chr14 83708170 83708747 + 0.75 NA Intergenic Intergenic 1065826 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 163.25-76 chr7 136385112 136385411 + 0.75 NA Intergenic L1MEd|LINE|L1 -407902 NM_145808 136319 Hs.602015 NM_145808 ENSG00000105887 MTPN GCDP|V-1 myotrophin protein-coding 185.25-32 chr17 79497963 79498309 + 0.75 NA intron (NM_001350451, intron 1 of 14) intron (NM_001350451, intron 1 of 14) 18012 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 158-57 chr4 67151000 67151321 + 0.75 NA Intergenic Intergenic 270840 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 229.5-28 chr4 100273228 100273638 + 0.75 NA Intergenic Intergenic -82965 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 244.5-24 chr4 75348282 75348762 + 0.75 NA Intergenic Intergenic -5554 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 165.5-70 chr5 54091479 54091738 + 0.75 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) -140009 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 183.75-51 chr2 205569225 205569611 + 0.75 NA intron (NM_205863, intron 21 of 21) intron (NM_205863, intron 21 of 21) -113082 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 150.5-80 chr3 193245381 193245703 + 0.75 NA intron (NM_020386, intron 1 of 3) L1MA7|LINE|L1 3763 NR_026877 84789 Hs.676481 NM_032703 MGC2889 - uncharacterized protein MGC2889 ncRNA 265.75-13 chr4 174794751 174795351 + 0.75 NA intron (NM_006529, intron 1 of 9) (AT)n|Simple_repeat|Simple_repeat 34196 NM_006529 8001 Hs.413099 NM_006529 ENSG00000145451 GLRA3 - glycine receptor alpha 3 protein-coding 161-53 chr3 29605192 29605488 + 0.75 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 324028 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 155-75 chr4 130026276 130026537 + 0.75 NA Intergenic Intergenic 254787 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 167.5-59 chr3 132953970 132954316 + 0.75 NA Intergenic Intergenic -84145 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 213.75-30 chr5 94153004 94153376 + 0.75 NA 3' UTR (NM_001145678, exon 21 of 21) 3' UTR (NM_001145678, exon 21 of 21) -41491 NM_001163417 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 223.25-19 chr3 53996051 53996607 + 0.75 NA Intergenic LTR88a|LTR|Gypsy? -104470 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 175.25-51 chr5 59258551 59259144 + 0.75 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 17268 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 167.5-39 chr2 57966749 57967095 + 0.75 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) 59271 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 177.25-36 chr2 60994941 60995305 + 0.75 NA intron (NM_144709, intron 4 of 17) MIRb|SINE|MIR 22089 NM_001322124 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridine synthase 10 protein-coding 185.25-70 chr5 160406054 160406496 + 0.75 NA intron (NM_001364517, intron 12 of 15) L1MC5a|LINE|L1 -6178 NM_001303251 63920 Hs.529464 NM_022090 ENSG00000221886 ZBED8 Buster3|C5orf54 zinc finger BED-type containing 8 protein-coding 166.25-31 chr17 69955527 69955797 + 0.75 NA Intergenic MLT2A2|LTR|ERVL -6045 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 181.75-61 chr7 14197833 14198242 + 0.75 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -206612 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 223-19 chr7 50625518 50625921 + 0.75 NA intron (NM_001350816, intron 7 of 17) intron (NM_001350816, intron 7 of 17) -60314 NM_001082971 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 211.75-20 chr3 4392206 4392532 + 0.75 NA intron (NM_001164674, intron 6 of 7) L1M4a1|LINE|L1 74900 NM_182760 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 173.25-27 chr16 10701318 10701722 + 0.75 NA Intergenic SATR2|Satellite|Satellite -6590 NM_144674 146279 Hs.143519 NM_144674 ENSG00000153060 TEKT5 CT149 tektin 5 protein-coding 189.75-84 chrX 53841765 53842121 + 0.75 NA Intergenic Intergenic -155224 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 protein-coding 250.5-27 chr8 32730107 32730587 + 0.75 NA intron (NM_001322201, intron 4 of 8) AluJb|SINE|Alu 8512 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 199.75-34 chr20 44856394 44856839 + 0.75 NA Intergenic LTR45B|LTR|ERV1 -29089 NM_003404 7529 Hs.643544 NM_003404 ENSG00000166913 YWHAB GW128|HEL-S-1|HS1|KCIP-1|YWHAA tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta protein-coding 236.75-22 chr4 125993360 125993958 + 0.75 NA Intergenic Intergenic 486400 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 185.25-9 chr11 8403236 8403597 + 0.75 NA intron (NM_001352399, intron 11 of 11) CR1_Mam|LINE|CR1 -134629 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 206-27 chr5 151752156 151752742 + 0.75 NA intron (NM_004045, intron 1 of 3) intron (NM_004045, intron 1 of 3) 6182 NM_004045 475 Hs.125213 NM_004045 ENSG00000177556 ATOX1 ATX1|HAH1 antioxidant 1 copper chaperone protein-coding 172.5-60 chr4 166475337 166475629 + 0.75 NA Intergenic Intergenic 602246 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 297.25-13 chr9 88361894 88362397 + 0.75 NA Intergenic AluSx1|SINE|Alu -26299 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 260.5-8 chr22 47867793 47868433 + 0.75 NA Intergenic L1ME2|LINE|L1 236439 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 222.5-58 chrX 63515131 63515510 + 0.75 NA intron (NR_152613, intron 1 of 3) intron (NR_152613, intron 1 of 3) 45775 NR_152612 92249 Hs.31532 NR_015353 ENSG00000235437 LINC01278 - long intergenic non-protein coding RNA 1278 ncRNA 148.75-108 chr9 27123368 27123755 + 0.75 NA intron (NM_001290078, intron 1 of 20) intron (NM_001290078, intron 1 of 20) 14420 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 175.25-36 chr2 156488647 156489071 + 0.75 NA intron (NM_000408, intron 2 of 16) intron (NM_000408, intron 2 of 16) 52480 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 278.25-2 chr11 75901824 75902486 + 0.75 NA intron (NM_003369, intron 5 of 14) intron (NM_003369, intron 5 of 14) 86945 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 259.75-6 chr11 45936261 45936711 + 0.75 NA intron (NR_147890, intron 16 of 18) intron (NR_147890, intron 16 of 18) 13830 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding 203.25-18 chr18 13989585 13990301 + 0.75 NA Intergenic L1MA8|LINE|L1 -74236 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 153.5-103 chr8 16692233 16692720 + 0.75 NA Intergenic L1M6|LINE|L1 309869 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 225.75 chr1 40339307 40339842 + 0.75 NA Intergenic Intergenic -22288 NM_001852 1298 Hs.418012 NM_001852 ENSG00000049089 COL9A2 DJ39G22.4|EDM2|MED|STL5 collagen type IX alpha 2 chain protein-coding 243.75-8 chr2 30135467 30136133 + 0.75 NA Intergenic Intergenic -11207 NM_016061 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 178.75-44 chr3 147365170 147365512 + 0.75 NA Intergenic (AAAAC)n|Simple_repeat|Simple_repeat 27089 NR_040762 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 247.5-21 chr2 79811587 79812151 + 0.75 NA intron (NM_001282598, intron 3 of 17) L1M5|LINE|L1 54714 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 167.75-84 chr7 25619951 25620296 + 0.75 NA intron (NR_157815, intron 3 of 4) (TCCC)n|Simple_repeat|Simple_repeat 43017 NR_157828 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 186.5-66 chr7 33361405 33361732 + 0.75 NA intron (NM_198428, intron 16 of 22) L1M2a|LINE|L1 232004 NM_001348040 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 239.5-9 chr12 2068897 2069500 + 0.75 NA intron (NM_199460, intron 1 of 49).2 intron (NM_199460, intron 1 of 49).2 15913 NM_001167624 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 375 chr18 69680586 69681231 + 0.75 NA intron (NM_152721, intron 4 of 7) intron (NM_152721, intron 4 of 7) 210977 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 253.25-14 chr3 76122883 76123416 + 0.75 NA Intergenic L1M7|LINE|L1 -337600 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 163.75-75 chr9 80010952 80011355 + 0.75 NA intron (NR_121212, intron 3 of 4) L1M4|LINE|L1 36130 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 290.25-2 chr1 173270421 173271120 + 0.75 NA intron (NR_037845, intron 2 of 2) intron (NR_037845, intron 2 of 2) -63439 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 171.25-34 chr2 148822941 148823327 + 0.75 NA Intergenic Intergenic -52093 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 242.5-33 chr5 57199021 57199535 + 0.75 NA intron (NM_001331037, intron 2 of 12) intron (NM_001331037, intron 2 of 12) -14796 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 225.25-11 chr12 61020957 61021519 + 0.75 NA Intergenic L1PB1|LINE|L1 1171601 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 155.25-51 chr20 10081048 10081452 + 0.75 NA intron (NR_040710, intron 3 of 4) intron (NR_040710, intron 3 of 4) 46263 NM_022096 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 190.5-53 chr5 124433380 124433777 + 0.75 NA intron (NR_125774, intron 3 of 5) (AT)n|Simple_repeat|Simple_repeat 4942 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 171-70 chr8 105305088 105305485 + 0.75 NA Intergenic MIR|SINE|MIR -13152 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 274-3 chr11 21787550 21788106 + 0.75 NA Intergenic L1MA2|LINE|L1 -405257 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 200.75-4 chr10 9388327 9388890 + 0.75 NA Intergenic MER85|DNA|PiggyBac -93015 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 157.25-30 chr15 54391603 54392115 + 0.75 NA intron (NM_001329919, intron 16 of 31) intron (NM_001329919, intron 16 of 31) 379211 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 210-29 chr2 182005546 182005919 + 0.75 NA intron (NM_001261425, intron 2 of 5) intron (NM_001261425, intron 2 of 5) 19879 NM_001261425 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 191-32 chr21 29606751 29607235 + 0.75 NA intron (NM_000830, intron 7 of 16) intron (NM_000830, intron 7 of 16) 10953 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 185.25-6 chr1 199195547 199196072 + 0.75 NA intron (NR_147896, intron 3 of 3) MLT2B3|LTR|ERVL 47211 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 194.25-53 chr9 34684341 34684763 + 0.75 NA Intergenic Intergenic 6724 NM_006274 6363 Hs.50002 NM_006274 ENSG00000172724 CCL19 CKb11|ELC|MIP-3b|MIP3B|SCYA19 C-C motif chemokine ligand 19 protein-coding 171.5-2 chr1 14519603 14519902 + 0.75 NA Intergenic Intergenic -78933 NM_201628 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 146.5-83 chr5 21141033 21141389 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -318269 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 209.75-15 chr14 60948990 60949306 + 0.75 NA intron (NM_001177963, intron 6 of 6) intron (NM_001177963, intron 6 of 6) 31931 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 148.5-44 chr2 102225876 102226252 + 0.75 NA intron (NM_001351447, intron 7 of 9) intron (NM_001351447, intron 7 of 9) 38750 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 221.5-52 chr8 131114382 131114839 + 0.75 NA Intergenic L1MA1|LINE|L1 -73701 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 229.25-23 chr5 112949742 112950136 + 0.75 NA Intergenic Intergenic -26859 NM_152624 167227 Hs.443875 NM_152624 ENSG00000172795 DCP2 NUDT20 decapping mRNA 2 protein-coding 272.25-7 chr14 53079748 53080446 + 0.75 NA intron (NM_030637, intron 4 of 11) AluSz|SINE|Alu 73226 NM_001160147 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 223.5-23 chr2 62201984 62202466 + 0.75 NA intron (NM_006577, intron 1 of 1) L2c|LINE|L2 -3601 NR_049824 100847087 NR_049824 ENSG00000266097 MIR5192 - microRNA 5192 ncRNA 161.25-75 chrX 45124891 45125345 + 0.75 NA Intergenic L1MA2|LINE|L1 75758 NM_024689 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 199-37 chr7 118582935 118583409 + 0.75 NA Intergenic Intergenic 358468 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 158-58 chr4 71938512 71938843 + 0.75 NA Intergenic Intergenic -93127 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 191.75-46 chr4 182294456 182294920 + 0.75 NA intron (NM_001080477, intron 1 of 27) intron (NM_001080477, intron 1 of 27) 51286 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 318.75-3 chr21 23372820 23373546 + 0.75 NA intron (NR_040254, intron 1 of 4) Charlie6|DNA|hAT-Charlie 11652 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 180-27 chr16 59346073 59346546 + 0.75 NA Intergenic Intergenic 408882 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 216.25-23 chr4 12519518 12520035 + 0.75 NA Intergenic MamRep38|DNA|hAT 296325 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 155.5-98 chr7 46201739 46202280 + 0.75 NA Intergenic (CTAT)n|Simple_repeat|Simple_repeat -280737 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 280.75-9 chr2 193320915 193321552 + 0.75 NA Intergenic Intergenic 571388 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 175.25-6 chr10 89187279 89187798 + 0.75 NA Intergenic Intergenic 19779 NM_003956 9023 Hs.47357 NM_003956 ENSG00000138135 CH25H C25H cholesterol 25-hydroxylase protein-coding 181.75-44 chr3 97568194 97568774 + 0.75 NA intron (NM_001080448, intron 11 of 17) L2c|LINE|L2 128877 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 216.25-5 chr10 58074118 58074546 + 0.75 NA Intergenic L1PB3|LINE|L1 193562 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 197-9 chr16 72262050 72262463 + 0.75 NA Intergenic Intergenic -89806 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 157.25-43 chr18 61281717 61282061 + 0.75 NA Intergenic L1M7|LINE|L1 -51541 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 219.25-10 chr13 56761997 56762420 + 0.75 NA Intergenic L1MC|LINE|L1 -378710 NM_001130407 729250 Hs.525056 NM_001130407 ENSG00000234278 PRR20E PRR20|PRR20A|PRR20B|PRR20C|PRR20D proline rich 20E protein-coding 206.5-47 chr8 38148442 38148774 + 0.75 NA intron (NM_000349, intron 2 of 6) intron (NM_000349, intron 2 of 6) 2344 NM_000349 6770 Hs.521535 NM_000349 ENSG00000147465 STAR STARD1 steroidogenic acute regulatory protein protein-coding 154-65 chr3 43166921 43167350 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR -61056 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 150.75-60 chr3 154874605 154874839 + 0.75 NA Intergenic AluJr4|SINE|Alu -149402 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 166.25-28 chr16 51595329 51595586 + 0.75 NA Intergenic MLT1G1|LTR|ERVL-MaLR -167062 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 284-8 chr7 30687170 30687615 + 0.75 NA intron (NM_001202481, intron 2 of 13) L1ME4a|LINE|L1 -4867 NM_001202483 1395 Hs.546246 NM_001883 ENSG00000106113 CRHR2 CRF-RB|CRF2|CRFR2|HM-CRF corticotropin releasing hormone receptor 2 protein-coding 153.25-81 chr4 44958498 44958859 + 0.75 NA Intergenic L1PA15-16|LINE|L1 -232044 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 192.25-31 chr2 19922592 19922922 + 0.75 NA intron (NM_001006657, intron 26 of 27) MER9a2|LTR|ERVK -20774 NM_001008237 130502 Hs.591547 NM_001008237 ENSG00000183891 TTC32 - tetratricopeptide repeat domain 32 protein-coding 195.25-63 chr8 134984447 134984998 + 0.75 NA Intergenic L1MEd|LINE|L1 134787 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 292.25-2 chr15 64570776 64571277 + 0.75 NA intron (NM_015042, intron 1 of 8) AluSx|SINE|Alu 71606 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 196.5-6 chr10 68507669 68508165 + 0.75 NA intron (NM_001324314, intron 3 of 9) intron (NM_001324314, intron 3 of 9) 10301 NM_001324315 8034 Hs.180408 NM_152707 ENSG00000122912 SLC25A16 D10S105E|GDA|GDC|HGT.1|ML7|hML7 solute carrier family 25 member 16 protein-coding 183.25-71 chr7 98898471 98898825 + 0.75 NA intron (NM_003496, intron 8 of 70) intron (NM_003496, intron 8 of 70) 16951 NR_132754 106633801 NR_132754 SCARNA28 ZL1 small Cajal body-specific RNA 28 ncRNA 180.5-41 chr2 140317412 140317801 + 0.75 NA intron (NM_018557, intron 82 of 90) L2|LINE|L2 269079 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 272.5-11 chr22 35010044 35010838 + 0.75 NA Intergenic Intergenic -12525 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 151.5-104 chr8 140967054 140967334 + 0.75 NA intron (NM_001352719, intron 1 of 32) MIRb|SINE|MIR 33810 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 171.75-57 chr4 98669877 98670383 + 0.75 NA Intergenic AluSz|SINE|Alu 11228 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 223.5-3 chr1 101399933 101400366 + 0.75 NA Intergenic L2b|LINE|L2 76312 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 160-77 chr7 54201020 54201405 + 0.75 NA Intergenic Intergenic -129485 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 187-27 chr21 30772113 30772418 + 0.75 NA Intergenic Intergenic -16837 NM_181619 337977 Hs.567837 NM_181619 ENSG00000187005 KRTAP21-1 KAP21.1 keratin associated protein 21-1 protein-coding 188.5-7 chr10 89097743 89098110 + 0.75 NA Intergenic MER44A|DNA|TcMar-Tigger -34515 NR_039827 100616192 NR_039827 ENSG00000265375 MIR4679-2 - microRNA 4679-2 ncRNA 154.5-16 chr11 43599533 43599795 + 0.75 NA Intergenic Intergenic 18270 NR_029697 406918 NR_029697 ENSG00000199077 MIR129-2 MIR-129b|MIRN129-2|mir-129-2 microRNA 129-2 ncRNA 193.5-42 chr3 10721947 10722444 + 0.75 NA Intergenic Intergenic 42014 NR_027102 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 173.5-51 chr3 47221920 47222419 + 0.75 NA intron (NR_033373, intron 2 of 6) AluSx1|SINE|Alu 28440 NR_145712 109617025 NR_145712 SNORD13J - small nucleolar RNA, C/D box 13J snoRNA 160.5-78 chr4 128191444 128191706 + 0.75 NA intron (NR_146772, intron 14 of 19) L1MA4|LINE|L1 96238 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 248-7 chr2 123558366 123558787 + 0.75 NA Intergenic L1PA13|LINE|L1 466598 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 221.25-35 chr9 105985761 105986285 + 0.75 NA Intergenic Intergenic 291482 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 254.25 chr1 105506501 105507121 + 0.75 NA Intergenic Intergenic 112124 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 231.75-21 chr4 56383040 56383532 + 0.75 NA intron (NM_001286668, intron 1 of 13) AluJr|SINE|Alu 4205 NM_001323890 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 255.5-28 chr4 64941817 64942364 + 0.75 NA intron (NR_033976, intron 2 of 6) intron (NR_033976, intron 2 of 6) 62410 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 240-21 chr4 40113915 40114497 + 0.75 NA intron (NM_001318359, intron 8 of 18) intron (NM_001318359, intron 8 of 18) -57007 NR_027277 344967 Hs.534633 NR_027277 ENSG00000205794 LOC344967 - acyl-CoA thioesterase 7 pseudogene pseudo 315.5-8 chr5 97206051 97206728 + 0.75 NA Intergenic L1PB1|LINE|L1 -23142 NM_001159749 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 152.25-30 chr16 20432747 20433196 + 0.75 NA intron (NM_017888, intron 10 of 13) AluSz6|SINE|Alu -18550 NM_001308169 123876 Hs.298252 NM_001010845 ENSG00000183747 ACSM2A A-923A4.1|ACSM2 acyl-CoA synthetase medium chain family member 2A protein-coding 232.5-34 chr4 39259202 39259591 + 0.75 NA intron (NM_025132, intron 28 of 36) L1ME3|LINE|L1 76867 NM_001317924 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 165.5-92 chr7 116136785 116137005 + 0.75 NA Intergenic Intergenic -73644 NM_015641 26136 Hs.592286 NM_015641 ENSG00000135269 TES TESS|TESS-2 testin LIM domain protein protein-coding 276-9 chr8 118024529 118025290 + 0.75 NA intron (NM_000127, intron 1 of 10) L2a|LINE|L2 86910 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 216.5-19 chr2 84223644 84223934 + 0.75 NA Intergenic A-rich|Low_complexity|Low_complexity -66893 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 208.25-22 chr17 62858706 62859006 + 0.75 NA Intergenic AluSq2|SINE|Alu 50354 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 211.5-40 chr5 64671222 64671573 + 0.75 NA Intergenic AluJo|SINE|Alu -19106 NM_001164442 100132916 Hs.591776 NM_001164442 ENSG00000145642 SHISAL2B FAM159B shisa like 2B protein-coding 247.5-16 chr14 27487907 27488444 + 0.75 NA intron (NR_148991, intron 2 of 2) intron (NR_148991, intron 2 of 2) -124413 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 191.75-58 chr7 42128013 42128587 + 0.75 NA intron (NM_000168, intron 3 of 14) intron (NM_000168, intron 3 of 14) 108909 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 147.5-43 chr2 75961097 75961451 + 0.75 NA Intergenic Intergenic -250359 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 195.5-13 chr12 90159541 90160073 + 0.75 NA Intergenic Intergenic -133511 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 151.75-15 chr11 42855671 42856065 + 0.75 NA Intergenic L1MEc|LINE|L1 413501 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 173.5-26 chr15 99774767 99775092 + 0.75 NA Intergenic Intergenic 31998 NR_003260 196968 Hs.567763 NM_194295 ENSG00000182397 DNM1P46 C15orf51|DNM1DN14.2|DNM1DN14@ dynamin 1 pseudogene 46 pseudo 214.25-12 chr15 76864356 76864786 + 0.75 NA intron (NR_148227, intron 2 of 32) intron (NR_148227, intron 2 of 32) -2627 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 218.25-32 chr4 149002483 149002909 + 0.75 NA Intergenic L1ME3C|LINE|L1 -60318 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 396-2 chr21 27786482 27787301 + 0.75 NA Intergenic MSTB|LTR|ERVL-MaLR 64512 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 246.25 chr1 68459144 68459642 + 0.75 NA Intergenic Intergenic -9439 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 204.25-21 chr19 27624779 27625140 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -168472 NR_110691 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 243.25-12 chr2 206312625 206313291 + 0.75 NA 3' UTR (NM_001285549, exon 7 of 7).2 3' UTR (NM_001285549, exon 7 of 7).2 37948 NM_001285549 57683 Hs.110489 NM_020923 ENSG00000204186 ZDBF2 Slx9 zinc finger DBF-type containing 2 protein-coding 196.25-21 chr15 91778071 91778605 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 -75370 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 202-55 chr9 100603812 100604299 + 0.75 NA Intergenic Intergenic 25976 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 267.25-12 chr6 145699934 145700413 + 0.75 NA intron (NM_001360064, intron 1 of 3) intron (NM_001360064, intron 1 of 3) -13296 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 247-6 chr11 85888108 85888566 + 0.75 NA intron (NM_001286159, intron 5 of 10) L1ME4b|LINE|L1 33236 NM_173556 220047 Hs.567774 NM_173556 ENSG00000150676 CCDC83 CT148|HSD9|KP-CoT-23 coiled-coil domain containing 83 protein-coding 167-14 chr11 104445897 104446362 + 0.75 NA Intergenic Intergenic 163173 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 254.75-28 chr8 133734631 133735337 + 0.75 NA Intergenic Intergenic 42368 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 162-16 chr11 103081236 103081549 + 0.75 NA intron (NM_001318740, intron 3 of 6) intron (NM_001318740, intron 3 of 6) 10768 NM_032299 84259 Hs.503716 NM_032299 ENSG00000137692 DCUN1D5 SCCRO5 defective in cullin neddylation 1 domain containing 5 protein-coding 268-15 chr6 73652077 73652515 + 0.75 NA intron (NM_012434, intron 1 of 10) intron (NM_012434, intron 1 of 10) 1696 NM_012434 26503 Hs.597422 NM_012434 ENSG00000119899 SLC17A5 AST|ISSD|NSD|SD|SIALIN|SIASD|SLD solute carrier family 17 member 5 protein-coding 148.5-3 chr1 96982297 96982680 + 0.75 NA Intergenic Intergenic -113435 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 210.25-39 chr8 14584998 14585440 + 0.75 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 268291 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 148.75-68 chr4 31087326 31087640 + 0.75 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -83661 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 198.5-43 chr5 98567726 98568278 + 0.75 NA Intergenic Intergenic -200630 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 177-69 chr8 136500605 136500998 + 0.75 NA Intergenic (CTAT)n|Simple_repeat|Simple_repeat -29997 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 184-29 chr2 135926780 135927230 + 0.75 NA intron (NM_001293312, intron 6 of 14) intron (NM_001293312, intron 6 of 14) -50562 NM_005915 4175 Hs.444118 NM_005915 ENSG00000076003 MCM6 MCG40308|Mis5|P105MCM minichromosome maintenance complex component 6 protein-coding 227.75-15 chr19 48187104 48187489 + 0.75 NA intron (NM_199341, intron 3 of 3) intron (NM_199341, intron 3 of 3) 16616 NM_199341 374920 Hs.664054 NM_199341 ENSG00000185453 ZSWIM9 C19orf68 zinc finger SWIM-type containing 9 protein-coding 297.5-11 chr4 113275275 113275921 + 0.75 NA intron (NM_001354275, intron 16 of 43) intron (NM_001354275, intron 16 of 43) -17241 NM_001354281 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 167-5 chr1 114380052 114380451 + 0.75 NA Intergenic LTR36|LTR|ERV1 130952 NM_033020 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 218.75-25 chr8 62956835 62957436 + 0.75 NA intron (NM_001304533, intron 6 of 6) L1MC1|LINE|L1 -20726 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 166.5-15 chr13 68629822 68630081 + 0.75 NA Intergenic LTR27|LTR|ERV1 255374 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 178.25-21 chr15 76924832 76925257 + 0.75 NA Intergenic L1M5|LINE|L1 -6705 NM_002902 5955 Hs.79088 NM_002902 ENSG00000117906 RCN2 E6BP|ERC-55|ERC55|TCBP49 reticulocalbin 2 protein-coding 319.5-7 chr3 179594139 179594734 + 0.75 NA intron (NM_020409, intron 4 of 6) Charlie7a|DNA|hAT-Charlie 10202 NM_020409 57129 Hs.283734 NM_020409 ENSG00000136522 MRPL47 CGI-204|L47mt|MRP-L47|NCM1 mitochondrial ribosomal protein L47 protein-coding 232.75-17 chr20 10355577 10356017 + 0.75 NA Intergenic Intergenic 76128 NM_018848 8195 Hs.472119 NM_018848 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 180.25-29 chr2 32577193 32577490 + 0.75 NA intron (NM_016252, intron 66 of 73) intron (NM_016252, intron 66 of 73) -2523 NR_125793 103752586 Hs.666092 NR_125793 ENSG00000279897 BIRC6-AS2 linc-birc6|megamind BIRC6 antisense RNA 2 ncRNA 270.75-19 chr4 188879651 188880115 + 0.75 NA Intergenic Intergenic 103226 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 167.75-103 chrX 57474261 57474660 + 0.75 NA intron (NR_148564, intron 11 of 11) L1PA8|LINE|L1 -117376 NM_007157 158586 Hs.156257 NM_007157 ENSG00000198455 ZXDB ZNF905|dJ83L6.1 zinc finger X-linked duplicated B protein-coding 273.25-18 chr8 84799163 84799775 + 0.75 NA intron (NM_001354322, intron 3 of 6) L2b|LINE|L2 93542 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 264.25-16 chr4 125378022 125378706 + 0.75 NA intron (NM_001291303, intron 1 of 16) L2a|LINE|L2 61952 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 254.75-22 chr7 56124482 56125016 + 0.75 NA Intergenic AluSx1|SINE|Alu -8332 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 166.25-7 chr10 14135850 14136152 + 0.75 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 61717 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 202-48 chr7 43505095 43505484 + 0.75 NA intron (NM_001287059, intron 19 of 27) L2b|LINE|L2 17253 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 166.5-59 chr4 43462635 43462982 + 0.75 NA intron (NR_146993, intron 1 of 2) intron (NR_146993, intron 1 of 2) 29735 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 177-53 chr5 101658636 101658893 + 0.75 NA Intergenic AluSx1|SINE|Alu 637520 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 241.5-8 chr18 2433693 2434410 + 0.75 NA Intergenic Intergenic 137454 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 194.25-3 chr10 62615484 62615839 + 0.75 NA intron (NM_199452, intron 1 of 6) MIRb|SINE|MIR 95213 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 183.5-50 chr4 44762237 44762607 + 0.75 NA Intergenic L1MB4|LINE|L1 -35788 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 303.5-15 chr6 62261480 62262176 + 0.75 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 24397 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 187-54 chr6 150809364 150809826 + 0.75 NA intron (NM_001329803, intron 7 of 13) intron (NM_001329803, intron 7 of 13) -56084 NM_015440 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 153-30 chr18 6749341 6749594 + 0.75 NA intron (NM_001366230, intron 1 of 17) intron (NM_001366230, intron 1 of 17) -19605 NR_134645 101927168 Hs.242240 NR_134645 LOC101927168 - uncharacterized LOC101927168 ncRNA 227.5-31 chr7 96209382 96209810 + 0.75 NA intron (NR_027662, intron 3 of 16) intron (NR_027662, intron 3 of 16) 10160 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 229-8 chr14 71635439 71635895 + 0.75 NA intron (NM_001354286, intron 8 of 24) L1MDa|LINE|L1 49369 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 288.5-17 chr5 86972088 86972651 + 0.75 NA Intergenic Intergenic 142585 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 244-18 chr3 11054297 11054669 + 0.75 NA Intergenic Intergenic -35259 NR_046647 100874090 Hs.628542 NR_046647 ENSG00000232287 SLC6A1-AS1 - SLC6A1 antisense RNA 1 ncRNA 192.25-25 chr16 74157369 74157894 + 0.75 NA Intergenic L1PA5|LINE|L1 57890 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 150.75-92 chr7 45650435 45650668 + 0.75 NA intron (NM_001281768, intron 6 of 9) intron (NM_001281768, intron 6 of 9) 76183 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 198.75-11 chr12 14753936 14754293 + 0.75 NA Intergenic AluSz|SINE|Alu 17017 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 220.5-32 chr6 44969775 44970206 + 0.75 NA intron (NM_181356, intron 8 of 12) intron (NM_181356, intron 8 of 12) 227780 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 212.75-24 chr4 59350461 59350793 + 0.75 NA Intergenic Intergenic 337054 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 180.25-25 chr18 29808606 29808982 + 0.75 NA Intergenic L1MEc|LINE|L1 -490116 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 197-49 chrX 100772892 100773314 + 0.75 NA Intergenic L1PA8|LINE|L1 -40982 NM_001370166 94121 Hs.592224 NM_080737 ENSG00000102362 SYTL4 SLP4 synaptotagmin like 4 protein-coding 167.75-78 chr6 60230257 60230517 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -1343743 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 195.5-31 chr2 204046379 204046810 + 0.75 NA Intergenic MIRb|SINE|MIR 109846 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 155.5-99 chr7 77829020 77829291 + 0.75 NA intron (NM_001366088, intron 1 of 11) AluJr|SINE|Alu -10973 NM_001366089 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 149.75-71 chr5 29681852 29682145 + 0.75 NA Intergenic MLT1A1|LTR|ERVL-MaLR -198562 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 250.25-6 chr12 33685602 33686157 + 0.75 NA Intergenic Intergenic -246060 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 176.75-15 chr11 104778227 104778587 + 0.75 NA Intergenic Intergenic 120263 NR_034063 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 195-41 chr6 38579611 38580103 + 0.75 NA intron (NM_052893, intron 6 of 11) intron (NM_052893, intron 6 of 11) 16210 NM_152733 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 246.75-9 chr20 34731283 34731877 + 0.75 NA intron (NM_001242539, intron 10 of 11) MIRb|SINE|MIR 26861 NM_001329431 58476 Hs.516994 NM_021202 ENSG00000078804 TP53INP2 C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1 tumor protein p53 inducible nuclear protein 2 protein-coding 251.25-7 chr11 92371746 92372281 + 0.75 NA intron (NM_001008781, intron 1 of 24) LTR16D|LTR|ERVL 19917 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 245-14 chr22 25763162 25763701 + 0.75 NA intron (NM_001318245, intron 3 of 43) intron (NM_001318245, intron 3 of 43) 21243 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 245.5-20 chr20 54791274 54791838 + 0.75 NA Intergenic L1PREC2|LINE|L1 315963 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 173.5-6 chr1 163736351 163736693 + 0.75 NA Intergenic L1MEb|LINE|L1 -313331 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 182.25-51 chr7 4291705 4292046 + 0.75 NA Intergenic Intergenic -157038 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 187-10 chr12 40041726 40042309 + 0.75 NA intron (NM_052885, intron 2 of 9) intron (NM_052885, intron 2 of 9) 64064 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 249-15 chr8 49887238 49887885 + 0.75 NA Intergenic L1MB7|LINE|L1 -22235 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 208.5-21 chr15 72000071 72000507 + 0.75 NA intron (NM_006901, intron 8 of 41) intron (NM_006901, intron 8 of 41) -113969 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 181-60 chrX 82479188 82479558 + 0.75 NA Intergenic Intergenic -1028917 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 170.75-38 chr21 22913854 22914256 + 0.75 NA Intergenic Intergenic -165229 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 231.75-6 chr13 70979997 70980523 + 0.75 NA Intergenic Intergenic -34881 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 191-44 chr5 112305839 112306251 + 0.75 NA intron (NM_001347887, intron 2 of 23) intron (NM_001347887, intron 2 of 23) 77762 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 193-14 chr11 122889012 122889375 + 0.75 NA intron (NM_001363089, intron 2 of 8) L1ME3Cz|LINE|L1 6263 NM_001363089 79864 Hs.164705 NM_024806 ENSG00000109944 JHY C11orf63 junctional cadherin complex regulator protein-coding 192.25-34 chr2 75041560 75041920 + 0.75 NA Intergenic Intergenic -49072 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 172.5-69 chr6 126963485 126963828 + 0.75 NA Intergenic Intergenic -155015 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 205-28 chr2 121388932 121389469 + 0.75 NA intron (NM_015282, intron 29 of 38) intron (NM_015282, intron 29 of 38) -103998 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 194-56 chr8 108790921 108791346 + 0.75 NA Intergenic Intergenic -3539 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 154-20 chr12 1373056 1373328 + 0.75 NA intron (NR_027948, intron 16 of 19) intron (NR_027948, intron 16 of 19) -127299 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 220.75-30 chr4 115778858 115779441 + 0.75 NA Intergenic Intergenic -520576 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 168-50 chr3 142977695 142977979 + 0.75 NA intron (NR_125393, intron 2 of 4) L1M3|LINE|L1 13779 NR_125393 101927832 Hs.710007 NR_125393 ENSG00000241570 PAQR9-AS1 - PAQR9 antisense RNA 1 ncRNA 222.5-4 chr1 74201229 74201674 + 0.75 NA intron (NM_001112808, intron 3 of 26) intron (NM_001112808, intron 3 of 26) 3239 NM_001199328 8790 Hs.480085 NM_003838 ENSG00000254685 FPGT GFPP fucose-1-phosphate guanylyltransferase protein-coding 257.5-14 chr20 50076387 50076866 + 0.75 NA Intergenic MER102a|DNA|hAT-Charlie -34997 NR_051976 100887755 Hs.195705 NR_051976 TRERNA1 LINC00651|treRNA translation regulatory long non-coding RNA 1 ncRNA 158-11 chr11 10493992 10494368 + 0.75 NA intron (NM_001025389, intron 7 of 14) L1MB4|LINE|L1 14146 NR_039705 100616263 NR_039705 ENSG00000283813 MIR4485 mir-4485 microRNA 4485 ncRNA 151.25-8 chr10 52049349 52049693 + 0.75 NA intron (NM_001098512, intron 5 of 17) L2a|LINE|L2 264607 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 295.5-8 chr4 59874613 59875090 + 0.75 NA Intergenic MIRc|SINE|MIR 861278 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 145.75-136 chrX 88216843 88217069 + 0.75 NA Intergenic ERVL-B4-int|LTR|ERVL -530269 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 262.5-5 chr12 103635641 103636259 + 0.75 NA intron (NM_017564, intron 6 of 68) LTR41|LTR|ERVL 48677 NM_017564 55576 Hs.408249 NM_017564 ENSG00000136011 STAB2 FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1 stabilin 2 protein-coding 164.5-40 chr2 213706516 213706791 + 0.75 NA intron (NR_047660, intron 9 of 14) L2c|LINE|L2 -51414 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 284.75-9 chr22 47228801 47229586 + 0.75 NA Intergenic L1MB2|LINE|L1 -116378 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 186.5-47 chr4 30493114 30493517 + 0.75 NA Intergenic L1MC2|LINE|L1 -227054 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 203.5-5 chr1 108128656 108129182 + 0.75 NA Intergenic Intergenic 63916 NM_213651 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1|SCAMC1 solute carrier family 25 member 24 protein-coding 173.75-34 chr2 77350728 77351030 + 0.75 NA intron (NR_146416, intron 1 of 1) L1ME4c|LINE|L1 171497 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 152.25-89 chr6 150181562 150182032 + 0.75 NA intron (NM_030949, intron 1 of 3) intron (NM_030949, intron 1 of 3) 38753 NM_030949 81706 Hs.486798 NM_030949 ENSG00000198729 PPP1R14C CPI17-like|KEPI|NY-BR-81 protein phosphatase 1 regulatory inhibitor subunit 14C protein-coding 183.75-35 chr17 39351501 39351996 + 0.75 NA intron (NM_001370209, intron 1 of 13) intron (NM_001370209, intron 1 of 13) 49878 NM_032875 84961 Hs.462946 NM_032875 ENSG00000108306 FBXL20 Fbl2|Fbl20 F-box and leucine rich repeat protein 20 protein-coding 182.25-15 chr18 527224 527512 + 0.75 NA Intergenic Intergenic -12074 NR_136505 105376854 NR_136505 ENSG00000264265 LINC01925 - long intergenic non-protein coding RNA 1925 ncRNA 150.75-5 chr1 189012571 189013044 + 0.75 NA Intergenic Intergenic 1463203 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 209-35 chr4 93480006 93480508 + 0.75 NA intron (NM_001286838, intron 10 of 14) intron (NM_001286838, intron 10 of 14) -348496 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 156.25-7 chr10 88551977 88552362 + 0.75 NA intron (NM_018363, intron 4 of 6) MIRb|SINE|MIR 31149 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 226-10 chr14 56788847 56789230 + 0.75 NA Intergenic Intergenic 16629 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 191-5 chr1 195768047 195768578 + 0.75 NA Intergenic L1MB5|LINE|L1 320403 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 161.5-80 chr5 147985493 147985864 + 0.75 NA Intergenic Intergenic -78294 NM_006846 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 162.75-39 chr2 104780315 104780675 + 0.75 NA Intergenic L1MB2|LINE|L1 -22776 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 207.5 chr1 77714891 77715382 + 0.75 NA intron (NM_015017, intron 19 of 24) intron (NM_015017, intron 19 of 24) -31709 NM_001308237 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 245.5-33 chr7 49456258 49456693 + 0.75 NA Intergenic Intergenic -317163 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 197.25-20 chr15 57340146 57340789 + 0.75 NA Intergenic MIRb|SINE|MIR 21329 NR_120337 101928611 Hs.569495 NR_120337 LINC01413 - long intergenic non-protein coding RNA 1413 ncRNA 186.5-53 chr4 113799487 113799817 + 0.75 NA Intergenic Intergenic -37725 NM_172114 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 268-9 chr18 5928476 5928999 + 0.75 NA Intergenic L1MEi|LINE|L1 -32783 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 208-34 chr6 144142289 144142798 + 0.75 NA Intergenic L1MA4A|LINE|L1 -7974 NM_003764 8676 Hs.118958 NM_003764 ENSG00000135604 STX11 FHL4|HLH4|HPLH4 syntaxin 11 protein-coding 165.75-82 chr5 145716500 145716917 + 0.75 NA Intergenic L1ME4c|LINE|L1 118634 NM_138492 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 174.25-53 chr5 105489088 105489499 + 0.75 NA Intergenic Intergenic 389819 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 160-15 chr12 77612146 77612642 + 0.75 NA Intergenic Intergenic -218500 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 244-10 chr15 73913746 73914455 + 0.75 NA Intergenic AluJb|SINE|Alu -12362 NM_005576 4016 Hs.65436 NM_005576 ENSG00000129038 LOXL1 LOL|LOXL lysyl oxidase like 1 protein-coding 149-101 chr8 125691712 125692031 + 0.75 NA Intergenic Intergenic 259326 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 246.25-22 chr2 35618365 35618853 + 0.75 NA Intergenic L1MEg|LINE|L1 147204 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 147.75-73 chr3 177908509 177908892 + 0.75 NA Intergenic L1P2|LINE|L1 91835 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 171.5-62 chr3 104060745 104061189 + 0.75 NA Intergenic LTR40a|LTR|ERVL -536851 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 198.75-24 chr15 58160858 58161243 + 0.75 NA intron (NM_020980, intron 1 of 5) intron (NM_020980, intron 1 of 5) 22669 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 222.5-51 chr8 31844381 31844836 + 0.75 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -181128 NR_104158 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 203.75-32 chr4 142554869 142555177 + 0.75 NA intron (NM_003866, intron 2 of 26) intron (NM_003866, intron 2 of 26) 291512 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 173.25-69 chr7 86494834 86495246 + 0.75 NA Intergenic Intergenic -148869 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 162.75-63 chr5 84755716 84756008 + 0.75 NA Intergenic Intergenic -370982 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 244.5-5 chr12 1685934 1686726 + 0.75 NA Intergenic L1ME1|LINE|L1 -4740 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 210-37 chr22 48915641 48915990 + 0.75 NA Intergenic L1ME1|LINE|L1 49045 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 212.5-52 chr8 72192561 72192891 + 0.75 NA Intergenic Intergenic 58908 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 177-34 chr20 5564634 5565021 + 0.75 NA intron (NM_019593, intron 15 of 19) AluJb|SINE|Alu 46179 NM_019593 56261 Hs.636359 NM_019593 ENSG00000125772 GPCPD1 EDI3|GDE5|GDPD6|PREI4 glycerophosphocholine phosphodiesterase 1 protein-coding 266.5-15 chr4 163805474 163805991 + 0.75 NA intron (NM_001166373, intron 3 of 7) intron (NM_001166373, intron 3 of 7) -192198 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 159.5-52 chr3 19898871 19899166 + 0.75 NA intron (NM_001330688, intron 9 of 14) intron (NM_001330688, intron 9 of 14) 35199 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 148.5-97 chr8 80464712 80465118 + 0.75 NA Intergenic Intergenic -20678 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 169.75-13 chr10 24177164 24177428 + 0.75 NA intron (NM_001098500, intron 2 of 18) (AT)n|Simple_repeat|Simple_repeat -31495 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 174.75-5 chr1 99167732 99167971 + 0.75 NA Intergenic Intergenic -96441 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 233-23 chr4 60941334 60941899 + 0.75 NA Intergenic Intergenic 18997 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 289.5-14 chr5 9789024 9789672 + 0.75 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -65029 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 179.25-34 chr16 82485276 82485606 + 0.75 NA Intergenic L1MDa|LINE|L1 -141528 NM_001220489 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 210.5-37 chr5 100408121 100408592 + 0.75 NA Intergenic AluJb|SINE|Alu -20102 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 278.25-15 chr6 45265016 45265555 + 0.75 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) -63032 NM_001015051 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 167-61 chr4 92912007 92912360 + 0.75 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 607784 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 249.5-20 chr4 31500649 31501020 + 0.75 NA Intergenic Intergenic -5710 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 191-46 chr6 123694033 123694460 + 0.75 NA Intergenic Intergenic -57153 NM_001256021 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 157.5-3 chr1 100941616 100941975 + 0.75 NA intron (NM_133496, intron 8 of 10) intron (NM_133496, intron 8 of 10) 45705 NM_133496 148867 Hs.533903 NM_133496 ENSG00000162695 SLC30A7 ZNT7|ZnT-7|ZnTL2 solute carrier family 30 member 7 protein-coding 151.75-107 chr8 105705472 105705832 + 0.75 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 354851 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 169.25-51 chr6 140888142 140888477 + 0.75 NA Intergenic L1MD3|LINE|L1 204495 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 160.5-71 chr4 71474594 71474958 + 0.75 NA intron (NM_003759, intron 11 of 22) intron (NM_003759, intron 11 of 22) 135723 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 175.75-37 chr20 16977040 16977356 + 0.75 NA Intergenic MER21B|LTR|ERVL 228845 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 245-20 chr6 67662244 67662848 + 0.75 NA Intergenic L1PA13|LINE|L1 -392805 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 298.75-9 chr8 119567918 119568551 + 0.75 NA non-coding (NR_045555, exon 11 of 14) non-coding (NR_045555, exon 11 of 14) 24774 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 207.75-39 chr6 17849658 17850026 + 0.75 NA intron (NM_001105567, intron 8 of 36) intron (NM_001105567, intron 8 of 36) 137793 NM_001105567 63971 Hs.94499 NM_022113 ENSG00000137177 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 173.5-35 chr2 163885659 163886203 + 0.75 NA Intergenic Intergenic -149923 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 192-21 chr16 53162320 53162672 + 0.75 NA intron (NM_001352127, intron 2 of 38) intron (NM_001352127, intron 2 of 38) 6570 NM_001308319 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 204.75-48 chr6 131209888 131210378 + 0.75 NA intron (NM_016377, intron 6 of 7) intron (NM_016377, intron 6 of 7) -40271 NM_138633 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 269.5-2 chr1 162058756 162059221 + 0.75 NA Intergenic L1MB4|LINE|L1 -10703 NM_001164757 9722 Hs.731942 NM_014697 ENSG00000198929 NOS1AP 6330408P19Rik|CAPON nitric oxide synthase 1 adaptor protein protein-coding 208-28 chr5 41309636 41310061 + 0.75 NA 3' UTR (NM_001005473, exon 3 of 3) 3' UTR (NM_001005473, exon 3 of 3) -48379 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 146.5-106 chr8 134976081 134976412 + 0.75 NA Intergenic Intergenic 126311 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 193.25-38 chr3 81128126 81128545 + 0.75 NA Intergenic L1M2|LINE|L1 134467 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 179.25-58 chr5 26007017 26007483 + 0.75 NA Intergenic Intergenic 816297 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 158.25-62 chr3 19829646 19829999 + 0.75 NA Intergenic Intergenic 104395 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 299.25-10 chr5 20691710 20692403 + 0.75 NA intron (NR_149120, intron 3 of 11) intron (NR_149120, intron 3 of 11) -76521 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 212.5-51 chr7 75606267 75606867 + 0.75 NA intron (NM_005338, intron 1 of 30) AluSx|SINE|Alu -78444 NR_028059 5387 Hs.659871 NM_005395 ENSG00000127957 PMS2P3 PMS2L3|PMS2L9|PMS5|PMSR3 PMS1 homolog 2, mismatch repair system component pseudogene 3 pseudo 338.25-3 chr11 91733772 91734486 + 0.75 NA Intergenic L1PB1|LINE|L1 -490905 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 198.75-42 chr5 94973862 94974303 + 0.75 NA intron (NM_001297777, intron 2 of 19) intron (NM_001297777, intron 2 of 19) 107784 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 218.25-18 chr2 14224699 14225426 + 0.75 NA Intergenic L1MC4|LINE|L1 175896 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 228.5-21 chr16 83457644 83458128 + 0.75 NA intron (NM_001220489, intron 5 of 12) MER5B|DNA|hAT-Charlie -50460 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 290.25-14 chr8 142554011 142554679 + 0.75 NA Intergenic Intergenic 60134 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1|hArc activity regulated cytoskeleton associated protein protein-coding 155.25-28 chr14 66428716 66428961 + 0.75 NA Intergenic L2a|LINE|L2 -57533 NR_110307 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 171.25-23 chr16 20180153 20180403 + 0.75 NA Intergenic LTR8B|LTR|ERV1 -106500 NM_001318483 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 152.5-35 chr15 99633441 99633706 + 0.75 NA intron (NM_001365209, intron 3 of 10) intron (NM_001365209, intron 3 of 10) 595 NM_001130928 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 213.5-43 chr8 108929142 108929563 + 0.75 NA Intergenic Intergenic -141758 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 295-3 chr2 72156426 72157158 + 0.75 NA Intergenic MIR|SINE|MIR -8930 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 282.75-2 chr15 81510650 81511122 + 0.75 NA Intergenic Intergenic -136673 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 201-8 chr11 32594797 32595357 + 0.75 NA intron (NM_006360, intron 7 of 10) intron (NM_006360, intron 7 of 10) 11246 NM_006360 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 154.25-94 chrX 73499131 73499585 + 0.75 NA Intergenic L1MD|LINE|L1 52104 NM_005193 1046 Hs.553488 NM_005193 ENSG00000131264 CDX4 - caudal type homeobox 4 protein-coding 166.25-25 chr15 63523830 63524240 + 0.75 NA intron (NM_001256702, intron 1 of 13) intron (NM_001256702, intron 1 of 13) 19442 NR_046342 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 176.75-57 chr3 107315292 107315844 + 0.75 NA intron (NR_028302, intron 2 of 3) L1PREC2|LINE|L1 -61871 NM_032600 84692 Hs.164799 NM_032600 ENSG00000138483 CCDC54 NYD-SP17|SP17 coiled-coil domain containing 54 protein-coding 199.5-7 chr12 83841548 83841973 + 0.75 NA Intergenic Intergenic 1071039 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 147.75-10 chr1 211219228 211219650 + 0.75 NA Intergenic Intergenic -39838 NM_001350069 55758 Hs.356399 NM_018254 ENSG00000117625 RCOR3 - REST corepressor 3 protein-coding 154.75-97 chr8 19453286 19453549 + 0.75 NA intron (NM_001130518, intron 5 of 9) HAL1b|LINE|L1 139441 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 229.25-16 chr2 139082006 139082485 + 0.75 NA Intergenic Intergenic 184921 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 278.75-10 chr7 52485268 52485859 + 0.75 NA Intergenic Intergenic -550070 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 172-28 chr16 65076260 65076592 + 0.75 NA intron (NM_001330576, intron 1 of 11) intron (NM_001330576, intron 1 of 11) 45637 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 184.5-63 chr5 92921897 92922262 + 0.75 NA Intergenic Intergenic 649264 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 341 chr3 104149875 104150650 + 0.75 NA Intergenic L1ME2z|LINE|L1 -626146 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 157.25-75 chr5 89769230 89769624 + 0.75 NA Intergenic Intergenic 247293 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 153.25-66 chr2 134755652 134756040 + 0.75 NA Intergenic MSTB1|LTR|ERVL-MaLR -36846 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 207.25-56 chr9 40925766 40926090 + 0.75 NA Intergenic CER|Satellite|Satellite 3164 NR_031629 100302167 NR_031629 ENSG00000275377 MIR1299 MIRN1299|hsa-mir-1299 microRNA 1299 ncRNA 156-38 chr2 23849336 23849590 + 0.75 NA intron (NR_125717, intron 13 of 28) L1MEc|LINE|L1 77660 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 197.5-34 chr2 133060455 133060774 + 0.75 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 145057 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 289.5-4 chr11 39551384 39551975 + 0.75 NA Intergenic Intergenic 741451 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 158.5-52 chr2 173182619 173182980 + 0.75 NA intron (NM_133646, intron 3 of 11) intron (NM_133646, intron 3 of 11) 99237 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 242.75-15 chr2 37112116 37112644 + 0.75 NA intron (NM_002759, intron 14 of 16) L1M5|LINE|L1 27929 NM_174931 253635 Hs.595250 NM_174931 ENSG00000152133 GPATCH11 CCDC75|CENP-Y|CENPY G-patch domain containing 11 protein-coding 294.25 chr1 174161025 174161752 + 0.75 NA intron (NM_001366445, intron 1 of 13) AluSp|SINE|Alu 1868 NM_001366448 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 163-72 chr6 65258526 65258788 + 0.75 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -42761 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 151.5-51 chr2 78613284 78613530 + 0.75 NA Intergenic Intergenic 67876 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 160.25-21 chr13 61234271 61234616 + 0.75 NA Intergenic L1M2|LINE|L1 -34563 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 249.75-18 chr5 129591473 129591942 + 0.75 NA intron (NM_133638, intron 7 of 22) intron (NM_133638, intron 7 of 22) -131018 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 200.25-23 chr16 84067301 84067769 + 0.75 NA intron (NM_003791, intron 16 of 22) intron (NM_003791, intron 16 of 22) -25378 NM_001080442 146167 NM_001080442 ENSG00000166558 SLC38A8 FVH2 solute carrier family 38 member 8 protein-coding 153-75 chr5 163539297 163539590 + 0.75 NA Intergenic L1MB1|LINE|L1 33824 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 179-19 chr17 69938782 69939097 + 0.75 NA Intergenic Intergenic -22768 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 156-89 chr7 114026132 114026397 + 0.75 NA Intergenic Intergenic -60063 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 180.75-10 chr11 22563642 22563977 + 0.75 NA Intergenic L1P4b|LINE|L1 62032 NM_022725 2188 Hs.632151 NM_022725 ENSG00000183161 FANCF FAF FA complementation group F protein-coding 286.75-2 chr14 53912768 53913527 + 0.75 NA Intergenic L1M5|LINE|L1 35337 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 148-59 chr21 25999362 25999637 + 0.75 NA intron (NM_001204301, intron 7 of 16) intron (NM_001204301, intron 7 of 16) 140891 NM_001136016 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 146.75-60 chr2 235588856 235589184 + 0.75 NA intron (NM_001037131, intron 1 of 17) intron (NM_001037131, intron 1 of 17) -71099 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 156.75-95 chr7 82215609 82215852 + 0.75 NA intron (NM_000722, intron 3 of 38) intron (NM_000722, intron 3 of 38) 206553 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 157-52 chr2 166340601 166341042 + 0.75 NA intron (NM_001365536, intron 1 of 26) AluJb|SINE|Alu 35123 NM_001365536 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 174-11 chr10 111908030 111908489 + 0.75 NA Intergenic Intergenic 275506 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 334-2 chr15 101647650 101648599 + 0.75 NA intron (NM_001307960, intron 2 of 4) AluSx|SINE|Alu 4257 NM_078474 80213 Hs.288912 NM_025141 ENSG00000184277 TM2D3 BLP2 TM2 domain containing 3 protein-coding 194.25-49 chr8 100581111 100581642 + 0.75 NA intron (NM_152628, intron 12 of 13) intron (NM_152628, intron 12 of 13) -21617 NM_001270378 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 251.5-25 chr5 108617147 108617787 + 0.75 NA Intergenic Intergenic 110794 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 248.5-4 chr11 106504385 106504986 + 0.75 NA Intergenic Intergenic 253278 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 235.5-34 chr7 33478249 33478770 + 0.75 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 348945 NM_001348040 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 172.5-84 chr8 123592727 123593062 + 0.75 NA Intergenic L1ME3G|LINE|L1 -51688 NM_058229 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 240-10 chr17 69895498 69895929 + 0.75 NA intron (NR_109971, intron 5 of 5) L2a|LINE|L2 -65994 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 199.75-48 chr6 124183797 124184282 + 0.75 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -98966 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 152-70 chr5 27664176 27664515 + 0.75 NA Intergenic L1MC5a|LINE|L1 192053 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 201.5-35 chr3 27538500 27538808 + 0.75 NA Intergenic Intergenic -54270 NM_001321103 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 206.75-53 chr8 80605175 80605490 + 0.75 NA Intergenic MER119|DNA|hAT-Charlie 119106 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 209.25-19 chr19 51511101 51511455 + 0.75 NA Intergenic L1MC4a|LINE|L1 -9478 NM_053003 89858 Hs.249741 NM_033329 ENSG00000254521 SIGLEC12 S2V|SIGLECL1|SLG|Siglec-XII sialic acid binding Ig like lectin 12 (gene/pseudogene) protein-coding 217.5-7 chr10 85181215 85181560 + 0.75 NA Intergenic Intergenic 17518 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 176-23 chr16 88638620 88638998 + 0.75 NA intron (NM_013278, intron 1 of 2) MIR1_Amn|SINE|MIR 237 NM_013278 27189 Hs.278911 NM_013278 ENSG00000124391 IL17C CX2|IL-17C interleukin 17C protein-coding 196.75-24 chr2 52517047 52517567 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger 146659 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 170-15 chr12 59121565 59122024 + 0.75 NA Intergenic Intergenic -201256 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 161.5-6 chr1 163984550 163984877 + 0.75 NA Intergenic L2a|LINE|L2 -561522 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 197-15 chr2 15685074 15685494 + 0.75 NA Intergenic Intergenic -5498 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 201-5 chr1 72766170 72766705 + 0.75 NA Intergenic L1M4a2|LINE|L1 -483898 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 233.25-7 chr11 23231619 23231951 + 0.75 NA Intergenic MIR|SINE|MIR 187405 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 162.5-67 chr4 138083193 138083650 + 0.75 NA intron (NR_037866, intron 7 of 10) L4_B_Mam|LINE|RTE-X -5593 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 241.5-14 chr20 14749721 14750473 + 0.75 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 179421 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 178-15 chr11 115302557 115303066 + 0.75 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -30766 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 171-64 chr7 77907940 77908308 + 0.75 NA intron (NM_001366085, intron 5 of 10) MLT1K|LTR|ERVL-MaLR 67994 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 185-58 chr5 30629937 30630276 + 0.75 NA Intergenic MARNA|DNA|TcMar-Mariner -563580 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 182.25-67 chr8 114445644 114445964 + 0.75 NA Intergenic L1PA16|LINE|L1 -1008865 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 272.75-11 chr2 135954878 135955621 + 0.75 NA intron (NM_001293312, intron 3 of 14) intron (NM_001293312, intron 3 of 14) -29927 NR_110199 101928243 Hs.602178 NR_110199 ENSG00000231890 DARS-AS1 - DARS antisense RNA 1 ncRNA 199.75-32 chr2 159482077 159482526 + 0.75 NA intron (NM_001329858, intron 2 of 36) MIRb|SINE|MIR -132993 NR_110587 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 161-77 chr6 120774044 120774418 + 0.75 NA Intergenic MER102b|DNA|hAT-Charlie 560249 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 197-38 chr5 158596144 158596595 + 0.75 NA Intergenic L1MB3|LINE|L1 -186596 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 160.5-120 chr9 96888247 96888488 + 0.75 NA Intergenic L1MDa|LINE|L1 19467 NR_038890 100132781 Hs.710921 NR_038890 LOC100132781 - cyclin Y like 1 pseudogene pseudo 238-4 chr10 59675079 59675720 + 0.75 NA intron (NM_194298, intron 2 of 5) MER50|LTR|ERV1 34492 NM_194298 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 264.75-16 chr6 97090329 97090836 + 0.75 NA intron (NR_136579, intron 4 of 7) intron (NR_136579, intron 4 of 7) 80506 NR_136579 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 186-33 chr4 69705452 69705773 + 0.75 NA Intergenic MLT1G|LTR|ERVL-MaLR -52365 NM_006798 10941 Hs.225950 NM_006798 ENSG00000173610 UGT2A1 UDPGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus protein-coding 278-10 chr5 145788495 145788906 + 0.75 NA intron (NM_205846, intron 5 of 6) L1MA7|LINE|L1 46642 NM_138492 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 227.75-12 chr17 12011786 12012199 + 0.75 NA Intergenic AluSg|SINE|Alu -8885 NM_003010 6416 Hs.514681 NM_003010 ENSG00000065559 MAP2K4 JNKK|JNKK1|MAPKK4|MEK4|MKK4|PRKMK4|SAPKK-1|SAPKK1|SEK1|SERK1|SKK1 mitogen-activated protein kinase kinase 4 protein-coding 159.25-88 chrX 52245456 52245747 + 0.75 NA Intergenic L1ME3A|LINE|L1 54979 NR_102368 101340250 NR_102368 ENSG00000221705 SNORA11E - small nucleolar RNA, H/ACA box 11E snoRNA 199.5-27 chr2 213802891 213803221 + 0.75 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) 44989 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 176.25-26 chr13 96742648 96743030 + 0.75 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 241333 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 220-9 chr2 78248358 78248813 + 0.75 NA intron (NR_110288, intron 1 of 3) L1M1|LINE|L1 42146 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 207-36 chr4 116466433 116466883 + 0.75 NA Intergenic Intergenic 166933 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 156.5-4 chr1 93946382 93946771 + 0.75 NA Intergenic L1MA4A|LINE|L1 -36978 NM_001308253 2730 Hs.315562 NM_002061 ENSG00000023909 GCLM GLCLR glutamate-cysteine ligase modifier subunit protein-coding 234.25-4 chr15 54205947 54206265 + 0.75 NA intron (NM_001329919, intron 4 of 31) intron (NM_001329919, intron 4 of 31) 193458 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 213-21 chr4 67000876 67001239 + 0.75 NA Intergenic L1PB1|LINE|L1 420943 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 145.75-121 chr8 5391418 5391736 + 0.75 NA Intergenic L1MCb|LINE|L1 -396663 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 218.75-15 chr3 86630765 86631344 + 0.75 NA Intergenic Helitron2Na_Mam|RC?|Helitron? 149111 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 276.5-14 chr8 84894278 84894721 + 0.75 NA intron (NM_001287244, intron 7 of 7) intron (NM_001287244, intron 7 of 7) 188572 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 150.75-77 chr5 148993271 148993489 + 0.75 NA 3' UTR (NM_024577, exon 17 of 17) 3' UTR (NM_024577, exon 17 of 17) 69029 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 181.75-71 chrX 79045105 79045438 + 0.75 NA Intergenic MST-int|LTR|ERVL-MaLR 99880 NM_001324225 27334 Hs.296433 NM_014499 ENSG00000078589 P2RY10 LYPSR2|P2Y10 P2Y receptor family member 10 protein-coding 195.25-26 chr2 70348244 70348730 + 0.75 NA Intergenic Intergenic -46420 NM_001329752 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 169.75-67 chr7 20454529 20454811 + 0.75 NA Intergenic Intergenic -122908 NR_110120 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 177.25-26 chr16 75898490 75898906 + 0.75 NA Intergenic Intergenic -172208 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 179-64 chr9 27287407 27287728 + 0.75 NA intron (NM_001161585, intron 5 of 6) MIRb|SINE|MIR -4774 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 223.75-9 chr16 76409835 76410516 + 0.75 NA intron (NR_136213, intron 3 of 23) intron (NR_136213, intron 3 of 23) 100323 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 149-88 chr6 12661439 12661701 + 0.75 NA Intergenic L1MEh|LINE|L1 -55197 NM_030948 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 196.5-10 chr12 33656050 33656497 + 0.75 NA Intergenic MER31-int|LTR|ERV1 -216454 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 167-16 chr13 36005465 36005860 + 0.75 NA intron (NM_001330071, intron 3 of 16) intron (NM_001330071, intron 3 of 16) 125720 NM_001330071 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 165.75-39 chr19 53400540 53401032 + 0.75 NA intron (NM_001350495, intron 2 of 2) (AT)n|Simple_repeat|Simple_repeat 5637 NM_001040185 91661 Hs.657821 NM_001040185 ENSG00000196417 ZNF765 - zinc finger protein 765 protein-coding 177.5-14 chr12 62156590 62157036 + 0.75 NA intron (NM_178539, intron 1 of 4) L1PB1|LINE|L1 36026 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 216.5-5 chr10 66228785 66229225 + 0.75 NA intron (NM_001127384, intron 13 of 17) L1MA5|LINE|L1 657580 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 186.5-20 chr14 70707110 70707454 + 0.75 NA intron (NR_125769, intron 3 of 3) intron (NR_125769, intron 3 of 3) 8584 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 170.75-15 chr13 32837237 32837599 + 0.75 NA intron (NR_047020, intron 4 of 4) Arthur1C|DNA|hAT-Tip100 74234 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 171-57 chr6 45770586 45770881 + 0.75 NA Intergenic L1ME2|LINE|L1 166864 NR_045674 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 154.75-7 chr1 239432240 239432687 + 0.75 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 45895 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 160-72 chr6 34677369 34677892 + 0.75 NA intron (NM_022758, intron 1 of 3) intron (NM_022758, intron 1 of 3) -18524 NR_134625 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 253-8 chr2 189386098 189386645 + 0.75 NA Intergenic L1PA16|LINE|L1 -55062 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 217.75-13 chr14 34917912 34918222 + 0.75 NA intron (NR_151701, intron 4 of 4) intron (NR_151701, intron 4 of 4) -21855 NR_002937 280655 Hs.639271 NR_002937 IGBP1P1 C14orf19 immunoglobulin (CD79A) binding protein 1 pseudogene 1 pseudo 236.25-12 chr12 43086637 43087025 + 0.75 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR -68484 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 186.75-68 chr5 40434354 40434806 + 0.75 NA Intergenic Intergenic -245335 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 165-56 chr3 19138990 19139271 + 0.75 NA Intergenic Intergenic -9380 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 240-16 chr3 7654055 7654842 + 0.75 NA intron (NM_000844, intron 8 of 9) intron (NM_000844, intron 8 of 9) -119164 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 216-29 chr6 124472423 124472866 + 0.75 NA intron (NM_001300738, intron 4 of 7) L2c|LINE|L2 189639 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 264.5-12 chr18 32460051 32460756 + 0.75 NA intron (NM_001242409, intron 1 of 5) intron (NM_001242409, intron 1 of 5) 10479 NM_001242409 64762 Hs.444314 NM_022751 ENSG00000141441 GAREM1 C18orf11|FAM59A|GAREM|Gm944 GRB2 associated regulator of MAPK1 subtype 1 protein-coding 221.25-31 chr8 87251949 87252362 + 0.75 NA intron (NM_173538, intron 6 of 10) intron (NM_173538, intron 6 of 10) 385740 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 173.75-18 chr12 39076549 39076900 + 0.75 NA Intergenic Intergenic -171133 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 202.75-45 chr8 110632307 110632829 + 0.75 NA Intergenic LTR40a|LTR|ERVL 394865 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 169.5-59 chr3 106747148 106747518 + 0.75 NA Intergenic Intergenic 493305 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 203-5 chr10 49527039 49527464 + 0.75 NA intron (NM_001277058, intron 4 of 5) intron (NM_001277058, intron 4 of 5) -2970 NM_170753 267004 Hs.49063 NM_170753 ENSG00000225830 PGBD3 - piggyBac transposable element derived 3 protein-coding 244.5-3 chr10 79262594 79263007 + 0.75 NA intron (NM_020338, intron 7 of 24) intron (NM_020338, intron 7 of 24) -84669 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 230.5-28 chr6 124544549 124545044 + 0.75 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 261791 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 152.25-91 chr7 13998783 13999187 + 0.75 NA Intergenic Intergenic -7560 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 205.25-7 chr11 24874585 24875004 + 0.75 NA intron (NM_001252010, intron 5 of 9) intron (NM_001252010, intron 5 of 9) 377741 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 223.5-42 chr7 146817611 146818044 + 0.75 NA intron (NM_014141, intron 1 of 22) MSTA|LTR|ERVL-MaLR 43556 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 218.75-20 chr5 103000191 103000711 + 0.75 NA intron (NM_001364590, intron 17 of 25) THE1C-int|LTR|ERVL-MaLR 119687 NM_017676 54826 Hs.24088 NM_017676 ENSG00000145723 GIN1 GIN-1|TGIN1|ZH2C2 gypsy retrotransposon integrase 1 protein-coding 169.5-17 chr11 22044448 22044938 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 -148392 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 234.75-26 chr8 113946025 113946575 + 0.75 NA Intergenic AluSc5|SINE|Alu -509361 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 145.75-47 chr2 15937218 15937481 + 0.75 NA intron (NR_110230, intron 3 of 3) MER41E|LTR|ERV1 -3201 NM_001293231 4613 Hs.25960 NM_005378 ENSG00000134323 MYCN MODED|N-myc|NMYC|ODED|bHLHe37 MYCN proto-oncogene, bHLH transcription factor protein-coding 200.75-13 chr14 23355873 23356189 + 0.75 NA TTS (NM_001277174) TTS (NM_001277174) -3119 NM_016609 51310 Hs.373498 NM_016609 ENSG00000092096 SLC22A17 24p3R|BOCT|BOIT|NGALR|NGALR2|NGALR3|hBOIT solute carrier family 22 member 17 protein-coding 196.5-35 chr3 187184170 187184641 + 0.75 NA Intergenic AluYk3|SINE|Alu -13081 NM_153708 132112 Hs.518480 NM_153708 ENSG00000175077 RTP1 Z3CXXC1 receptor transporter protein 1 protein-coding 193-20 chr14 53253373 53253797 + 0.75 NA Intergenic L1PA14|LINE|L1 100231 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 317.5-4 chr4 122267592 122268445 + 0.75 NA intron (NM_015312, intron 44 of 83) intron (NM_015312, intron 44 of 83) 97415 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 188.25-66 chr9 23128810 23129103 + 0.75 NA Intergenic L1MCa|LINE|L1 482756 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 176-10 chr12 1137778 1138125 + 0.75 NA intron (NR_027948, intron 6 of 19) (ATATATA)n|Simple_repeat|Simple_repeat 110203 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 157.25-18 chr13 82523182 82523444 + 0.75 NA Intergenic MIR|SINE|MIR -1296330 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 185-55 chr4 100255848 100256256 + 0.75 NA Intergenic L1ME3A|LINE|L1 -65584 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 156-81 chr6 70597797 70598122 + 0.75 NA Intergenic Intergenic 31029 NM_145267 135154 Hs.418495 NM_145267 ENSG00000154079 SDHAF4 C6orf57|Sdh8 succinate dehydrogenase complex assembly factor 4 protein-coding 210.75-35 chr5 40139658 40139987 + 0.75 NA Intergenic Intergenic 87531 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 165.75-113 chr8 132209902 132210302 + 0.75 NA intron (NM_004519, intron 1 of 14) MER5B|DNA|hAT-Charlie -104837 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 286.75-14 chr7 7034417 7035056 + 0.75 NA Intergenic L1MA9|LINE|L1 32309 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 312-3 chr5 117624447 117624959 + 0.75 NA Intergenic L1MEf|LINE|L1 -105658 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 168.75-42 chr2 54624788 54625278 + 0.75 NA intron (NM_178313, intron 10 of 30) intron (NM_178313, intron 10 of 30) 66639 NM_178313 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 151.25-87 chr8 4533838 4534176 + 0.75 NA intron (NM_033225, intron 2 of 69) intron (NM_033225, intron 2 of 69) 460907 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 217.75-6 chr10 28008378 28008823 + 0.75 NA Intergenic Intergenic -9521 NM_018076 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 170.25-33 chr2 163889359 163889693 + 0.75 NA Intergenic Intergenic -153518 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 166.25-32 chr2 59750676 59751007 + 0.75 NA Intergenic Intergenic 533133 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 169.25 chr1 74168428 74168812 + 0.75 NA intron (NM_001105659, intron 3 of 7) L1MD1|LINE|L1 29556 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 148.5-69 chr4 32174875 32175260 + 0.75 NA Intergenic L2c|LINE|L2 -152645 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 174.5-9 chr1 169835520 169835887 + 0.75 NA intron (NM_001366772, intron 15 of 22) intron (NM_001366772, intron 15 of 22) 40663 NM_001366768 55732 Hs.443551 NM_018186 ENSG00000000460 C1orf112 - chromosome 1 open reading frame 112 protein-coding 206-36 chr8 114391198 114391629 + 0.75 NA Intergenic Intergenic -954474 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 154.25-69 chr6 51162153 51162593 + 0.75 NA Intergenic Intergenic 343502 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 197.75-56 chr5 99921149 99921525 + 0.75 NA Intergenic Intergenic 387347 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 204.25-24 chr2 153290068 153290635 + 0.75 NA Intergenic Intergenic 188411 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 181.5-5 chr1 196339911 196340333 + 0.75 NA intron (NM_001287820, intron 15 of 26) FLAM_C|SINE|Alu 242359 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 181.25-14 chr14 69567960 69568292 + 0.75 NA Intergenic Intergenic 6745 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 145.75-42 chr17 70863160 70863372 + 0.75 NA Intergenic Intergenic 338913 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 211-34 chr7 41213013 41213517 + 0.75 NA Intergenic L1ME2z|LINE|L1 111661 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 171.75-9 chr1 190896548 190896984 + 0.75 NA Intergenic Intergenic 271876 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 147.5-90 chr6 137304922 137305184 + 0.75 NA Intergenic Intergenic -85623 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 202-33 chr3 94702804 94703237 + 0.75 NA Intergenic Intergenic -235243 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 149.25-51 chr2 184162076 184162457 + 0.75 NA Intergenic L1MEj|LINE|L1 -216709 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 160.5-51 chr2 107397072 107397385 + 0.75 NA Intergenic Intergenic -47703 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 196.75-28 chr2 150455777 150456173 + 0.75 NA Intergenic Intergenic 31720 NM_001254738 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 165.5-81 chr6 92506803 92507197 + 0.75 NA Intergenic L1MEc|LINE|L1 -816572 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 247-16 chr4 64306319 64306715 + 0.75 NA intron (NM_001363796, intron 6 of 11) LTR25-int|LTR|ERV1 102933 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 158 chr1 48974918 48975383 + 0.75 NA intron (NM_001323575, intron 5 of 12) ERVL-E-int|LTR|ERVL -198181 NM_001349794 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 197.75-18 chr14 42572674 42573092 + 0.75 NA Intergenic L1MA3|LINE|L1 966027 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 200.5-28 chr18 41077213 41077711 + 0.75 NA Intergenic Intergenic 443215 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 213-29 chr6 113980707 113981019 + 0.75 NA intron (NR_125845, intron 1 of 9) intron (NR_125845, intron 1 of 9) -9715 NM_001527 3066 Hs.3352 NM_001527 ENSG00000196591 HDAC2 HD2|KDAC2|RPD3|YAF1 histone deacetylase 2 protein-coding 233-25 chr5 65949423 65949883 + 0.75 NA intron (NM_001253697, intron 1 of 25) L1MD3|LINE|L1 -4080 NR_028474 100303749 Hs.608060 NR_028474 LOC100303749 - LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene pseudo 268-2 chr1 194327960 194328412 + 0.75 NA Intergenic Intergenic 1023441 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 195.75-34 chr2 30427124 30427695 + 0.75 NA Intergenic Intergenic -19837 NM_182551 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 205-7 chr10 130137790 130138146 + 0.75 NA intron (NM_006541, intron 1 of 10) AluJb|SINE|Alu 1559 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 186-32 chr4 57513250 57513618 + 0.75 NA Intergenic Intergenic 87562 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 155.75-15 chr10 89973173 89973524 + 0.75 NA Intergenic Intergenic -15975 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 175.75-62 chr6 89390733 89391096 + 0.75 NA intron (NM_021244, intron 1 of 6) L1MB7|LINE|L1 21359 NM_021244 58528 Hs.31712 NM_021244 ENSG00000025039 RRAGD RAGD|bA11D8.2.1 Ras related GTP binding D protein-coding 190.25-33 chr4 137110161 137110505 + 0.75 NA intron (NR_149105, intron 1 of 3) L1ME3|LINE|L1 -83423 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 155.5-40 chr19 39920599 39920839 + 0.75 NA intron (NM_003890, intron 3 of 28) L2b|LINE|L2 13907 NM_003890 8857 Hs.111732 NM_003890 FCGBP FC(GAMMA)BP Fc fragment of IgG binding protein protein-coding 250-12 chr4 122200009 122200493 + 0.75 NA intron (NM_015312, intron 12 of 83) intron (NM_015312, intron 12 of 83) 29648 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 303.5-17 chr7 89534923 89535579 + 0.75 NA Intergenic Intergenic -584149 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 199.75-21 chr15 70723817 70724240 + 0.75 NA intron (NM_018003, intron 1 of 18) L2c|LINE|L2 -21746 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 168.5-6 chr1 189521729 189522186 + 0.75 NA Intergenic Intergenic 954053 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 164 chr1 51082241 51082602 + 0.75 NA Intergenic L1MA8|LINE|L1 -19807 NM_001136508 284546 Hs.176177 NM_001136508 ENSG00000204006 C1orf185 - chromosome 1 open reading frame 185 protein-coding 271-9 chr5 59917369 59917854 + 0.75 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -23885 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 191.75-63 chr8 64082413 64082836 + 0.75 NA intron (NR_125826, intron 4 of 4) L1MC5a|LINE|L1 285934 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 181.5-51 chr3 100989114 100989624 + 0.75 NA intron (NM_001349332, intron 1 of 35) intron (NM_001349332, intron 1 of 35) 4121 NM_001349331 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 205.25-19 chr2 228878854 228879290 + 0.75 NA Intergenic Intergenic -267677 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 219.25-53 chr9 35269886 35270272 + 0.75 NA intron (NM_006377, intron 7 of 38) L1MC4|LINE|L1 -71817 NM_001371188 294.75-4 chr16 59638294 59639088 + 0.75 NA Intergenic MIR|SINE|MIR 116500 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 183.75-3 chr1 68740682 68741122 + 0.75 NA Intergenic Intergenic -243820 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 258.75-11 chr2 51198497 51199043 + 0.75 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 166169 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 189.5-65 chr7 95312803 95313230 + 0.75 NA intron (NM_000446, intron 4 of 8) L2|LINE|L2 11516 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 154.5-22 chr12 14443977 14444248 + 0.75 NA intron (NM_181352, intron 5 of 14) L1M5|LINE|L1 58831 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 212.75-2 chr11 25388857 25389211 + 0.75 NA Intergenic L2a|LINE|L2 -800089 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 154.5-100 chr9 99510735 99511040 + 0.75 NA Intergenic MIRc|SINE|MIR -135630 NR_102270 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 246.25-26 chr3 1755498 1755977 + 0.75 NA Intergenic Intergenic -343066 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 239.25-20 chr4 41223995 41224378 + 0.75 NA intron (NR_102709, intron 1 of 2) L1M5|LINE|L1 -9644 NM_004307 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 148.75-46 chr2 62452131 62452421 + 0.75 NA Intergenic L2a|LINE|L2 53919 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 173-48 chr3 169638235 169638608 + 0.75 NA intron (NM_001366473, intron 1 of 15) intron (NM_001366473, intron 1 of 15) 25291 NM_001205194 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 181-43 chr6 163674386 163674810 + 0.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -3114 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 168.5-8 chr10 43674877 43675271 + 0.75 NA TTS (NR_038867) TTS (NR_038867) -26193 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 171.75-93 chr9 24160942 24161232 + 0.75 NA Intergenic L1ME3|LINE|L1 -310486 NM_001351460 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 221.5-6 chr1 190288116 190288493 + 0.75 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 187706 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 236.75-12 chr2 117368583 117369179 + 0.75 NA Intergenic LOR1-int|LTR|ERV1 -445810 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 198.75-2 chr1 38675196 38675484 + 0.75 NA Intergenic Intergenic 184432 NM_022157 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 159.75-37 chr15 67089467 67089833 + 0.75 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) 24048 NM_005902 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 157.25-8 chr10 16585580 16585951 + 0.75 NA Intergenic Intergenic -63886 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 187.75-66 chr7 19001275 19001735 + 0.75 NA 3' UTR (NM_001321877, exon 25 of 25) 3' UTR (NM_001321877, exon 25 of 25) 116131 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 178.5-16 chr12 39656119 39656477 + 0.75 NA intron (NM_001031748, intron 7 of 12) Tigger3b|DNA|TcMar-Tigger 30115 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 188.25-15 chr14 75534966 75535284 + 0.75 NA intron (NM_006399, intron 2 of 2) L1ME4c|LINE|L1 12656 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 204.75-41 chr4 46277954 46278318 + 0.75 NA intron (NM_001114175, intron 7 of 8) intron (NM_001114175, intron 7 of 8) 111243 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 169.25-63 chr9 31550111 31550505 + 0.75 NA Intergenic Intergenic -168818 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 244.75-11 chr2 118151115 118151753 + 0.75 NA Intergenic L1ME3A|LINE|L1 34952 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 344.5-5 chr17 73707735 73708721 + 0.75 NA Intergenic AluSx1|SINE|Alu -29626 NM_001278587 100134391 Hs.694655 NM_001278587 LOC100134391 - uncharacterized LOC100134391 protein-coding 254.5 chr1 44628535 44628953 + 0.75 NA intron (NM_001319957, intron 4 of 13) L2c|LINE|L2 42312 NR_145816 109623472 NR_145816 SNORD145 - small nucleolar RNA, C/D box 145 snoRNA 177.25-35 chr2 58889103 58889571 + 0.75 NA intron (NR_033873, intron 3 of 13) intron (NR_033873, intron 3 of 13) -328371 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 161.5-95 chr9 82115946 82116289 + 0.75 NA Intergenic Intergenic 127345 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 278.25-9 chr19 39614106 39614782 + 0.75 NA Intergenic MSTA-int|LTR|ERVL-MaLR 11920 NM_013268 29124 Hs.23671 NM_013268 ENSG00000105198 LGALS13 GAL13|PLAC8|PP13 galectin 13 protein-coding 162.25-55 chr4 40391490 40392014 + 0.75 NA Intergenic Intergenic 56419 NM_017581 55584 Hs.272278 NM_017581 ENSG00000174343 CHRNA9 HSA243342|NACHRA9 cholinergic receptor nicotinic alpha 9 subunit protein-coding 202.5-5 chr1 231676815 231677226 + 0.75 NA intron (NM_001164556, intron 1 of 4) intron (NM_001164556, intron 1 of 4) 50205 NM_001164555 27185 Hs.13318 NM_018662 ENSG00000162946 DISC1 C1orf136|SCZD9 DISC1 scaffold protein protein-coding 172.25-68 chr7 41169995 41170319 + 0.75 NA Intergenic Intergenic 68553 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 158.75-80 chr8 79124393 79124758 + 0.75 NA Intergenic LTR10B1|LTR|ERV1 -207613 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 187.75-13 chr11 30553311 30553783 + 0.75 NA intron (NM_001584, intron 1 of 5) intron (NM_001584, intron 1 of 5) 26946 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 183.75-89 chr7 52960199 52960463 + 0.75 NA Intergenic Intergenic -75302 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 160.25-12 chr10 104652481 104652839 + 0.75 NA intron (NM_014978, intron 1 of 26) intron (NM_014978, intron 1 of 26) 11370 NM_014978 22986 Hs.671950 NM_014978 ENSG00000156395 SORCS3 SORCS sortilin related VPS10 domain containing receptor 3 protein-coding 160-78 chr7 80637468 80637734 + 0.75 NA promoter-TSS (NM_001001548) promoter-TSS (NM_001001548) -915 NM_000072 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 220.75-32 chr5 97763514 97764072 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL -76965 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 289-4 chr2 214774038 214774661 + 0.75 NA intron (NR_104216, intron 3 of 9) Tigger1|DNA|TcMar-Tigger 35334 NM_000465 580 Hs.591642 NM_000465 ENSG00000138376 BARD1 - BRCA1 associated RING domain 1 protein-coding 222-26 chr7 125842567 125842915 + 0.75 NA Intergenic L1MEf|LINE|L1 -578450 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 147.25-78 chr5 160025763 160026110 + 0.75 NA intron (NM_003314, intron 2 of 7) intron (NM_003314, intron 2 of 7) 16797 NM_003314 7265 Hs.519718 NM_003314 ENSG00000113312 TTC1 TPR1 tetratricopeptide repeat domain 1 protein-coding 175.25-23 chr14 70376140 70376419 + 0.75 NA intron (NM_001202549, intron 2 of 4) intron (NM_001202549, intron 2 of 4) -16596 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 176-31 chr2 72684834 72685123 + 0.75 NA intron (NR_135774, intron 6 of 19) L1ME2z|LINE|L1 141055 NM_001321730 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 158.75-17 chr12 127320366 127320674 + 0.75 NA Intergenic Intergenic 19552 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 150.75-99 chr8 116689098 116689406 + 0.75 NA intron (NM_003756, intron 2 of 7) L1MB7|LINE|L1 37152 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 186-50 chr7 133724132 133724528 + 0.75 NA intron (NM_021807, intron 10 of 17) intron (NM_021807, intron 10 of 17) 100558 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 155-108 chr8 123830223 123830687 + 0.75 NA Intergenic Intergenic -21532 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 150.5-97 chr5 131648361 131648688 + 0.75 NA intron (NM_133372, intron 16 of 17) intron (NM_133372, intron 16 of 17) -13295 NM_001164389 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 194.75-38 chr5 29003959 29004303 + 0.75 NA Intergenic Intergenic -61113 NR_109948 101929645 Hs.531878 NR_109948 LOC101929645 - uncharacterized LOC101929645 ncRNA 166-65 chr6 154974236 154974560 + 0.75 NA Intergenic Intergenic -115891 NM_012454 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 208.25-6 chr1 172699113 172699590 + 0.75 NA Intergenic Intergenic 40248 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 245-16 chr6 38213087 38213568 + 0.75 NA intron (NM_052893, intron 10 of 11) intron (NM_052893, intron 10 of 11) -268269 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 179-49 chr5 128011558 128012002 + 0.75 NA intron (NR_152803, intron 1 of 1) MIRb|SINE|MIR 71395 NR_152799 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 265-6 chr2 146352951 146353400 + 0.75 NA Intergenic L1ME1|LINE|L1 -233882 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 151.25-102 chr8 135718658 135719001 + 0.75 NA Intergenic Intergenic 261373 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 258.25-7 chr14 20092169 20092606 + 0.75 NA Intergenic Intergenic -25081 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 166-85 chr9 129529571 129529835 + 0.75 NA Intergenic HAL1|LINE|L1 41043 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 MetaLnc9 long intergenic non-protein coding RNA 963 ncRNA 187.5-74 chrX 116972130 116972541 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR -154475 NR_145523 100126447 Hs.695847 NR_145523 LOC100126447 - uncharacterized LOC100126447 ncRNA 184-57 chr8 114404424 114404947 + 0.75 NA Intergenic L1MA5|LINE|L1 -967746 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 210.25-20 chr2 118919811 118920404 + 0.75 NA Intergenic L1ME1|LINE|L1 -22062 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 198-19 chr21 28600331 28600758 + 0.75 NA Intergenic THE1B-int|LTR|ERVL-MaLR 61226 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 150.75-90 chr7 23666628 23666985 + 0.75 NA Intergenic MER33|DNA|hAT-Charlie -13393 NM_001300932 340277 Hs.592178 NM_199136 ENSG00000188732 FAM221A C7orf46 family with sequence similarity 221 member A protein-coding 230.75-24 chr20 40712673 40713168 + 0.75 NA Intergenic Intergenic 1703 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 199.25-4 chr10 82851086 82851489 + 0.75 NA intron (NR_163252, intron 3 of 8) intron (NR_163252, intron 3 of 8) -618367 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 188.5-75 chr9 28075204 28075673 + 0.75 NA intron (NM_152570, intron 5 of 6) L1ME3E|LINE|L1 -501572 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 179.5-17 chr13 55346085 55346499 + 0.75 NA Intergenic Intergenic 171838 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 162.75-71 chr6 90205738 90206130 + 0.75 NA intron (NM_021813, intron 4 of 8) intron (NM_021813, intron 4 of 8) 90909 NM_021813 60468 Hs.269764 NM_021813 ENSG00000112182 BACH2 BTBD25|IMD60 BTB domain and CNC homolog 2 protein-coding 206.75-17 chr15 100165569 100166011 + 0.75 NA intron (NM_139057, intron 8 of 21) intron (NM_139057, intron 8 of 21) 176185 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 293.75 chr1 152577519 152578330 + 0.75 NA Intergenic Intergenic 2592 NM_032563 84648 Hs.244349 NM_032563 ENSG00000163202 LCE3D LEP16|SPRL6A|SPRL6B late cornified envelope 3D protein-coding 150.5-52 chr19 39705178 39705443 + 0.75 NA intron (NM_020129, intron 1 of 3) intron (NM_020129, intron 1 of 3) 829 NM_203471 56891 Hs.24236 NM_020129 ENSG00000006659 LGALS14 CLC2|PPL13 galectin 14 protein-coding 149.75-12 chr10 69166523 69166868 + 0.75 NA intron (NM_001035260, intron 7 of 7) intron (NM_001035260, intron 7 of 7) -13539 NM_001323586 6832 Hs.106469 NM_003171 ENSG00000156502 SUPV3L1 SUV3 Suv3 like RNA helicase protein-coding 335.75-8 chrX 80269912 80270737 + 0.75 NA intron (NR_110646, intron 5 of 5) intron (NR_110646, intron 5 of 5) 64994 NR_110646 101060146 Hs.546064 NR_110646 ENSG00000278530 CHMP1B2P - charged multivesicular body protein 1B2, pseudogene pseudo 238.5-13 chr12 81263418 81263827 + 0.75 NA intron (NM_001282536, intron 27 of 29) intron (NM_001282536, intron 27 of 29) -15567 NR_120491 102724663 Hs.667264 NR_120491 ENSG00000257467 PPFIA2-AS1 - PPFIA2 antisense RNA 1 ncRNA 238.75-22 chr4 30617756 30618276 + 0.75 NA Intergenic Intergenic -102353 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 201.75-26 chr21 27437488 27437854 + 0.75 NA Intergenic L2c|LINE|L2 -284708 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 195-12 chr12 9716365 9716800 + 0.75 NA 3' UTR (NM_001267701, exon 3 of 3) 3' UTR (NM_001267701, exon 3 of 3) 16717 NM_001253750 160365 Hs.560087 NM_172004 ENSG00000184293 CLECL1 DCAL-1|DCAL1 C-type lectin like 1 protein-coding 199.5-11 chr14 46680067 46680414 + 0.75 NA Intergenic AluSq10|SINE|Alu -28459 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 243.75-19 chr9 75191869 75192286 + 0.75 NA Intergenic Intergenic 103563 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 159.25-72 chr7 106954818 106955201 + 0.75 NA Intergenic Intergenic 89530 NM_002649 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 150-13 chr10 120396008 120396276 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR -40919 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 193.5-75 chr8 106667792 106668463 + 0.75 NA intron (NM_181354, intron 1 of 13) HAL1b|LINE|L1 10319 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 184.5-30 chr14 72149168 72149731 + 0.75 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 215922 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 187-41 chr4 164758198 164758508 + 0.75 NA intron (NM_001352885, intron 1 of 2) L1ME2z|LINE|L1 4222 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 167.75-40 chr16 82804968 82805217 + 0.75 NA intron (NR_110938, intron 1 of 2) intron (NR_110938, intron 1 of 2) 31773 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 212.5-19 chr18 69371491 69371880 + 0.75 NA Intergenic L1MEf|LINE|L1 -29203 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 213-8 chr12 85838107 85838717 + 0.75 NA Intergenic Intergenic -2003 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 151.75-7 chr1 207048268 207048632 + 0.75 NA 3' UTR (NM_018566, exon 2 of 2) 3' UTR (NM_018566, exon 2 of 2) 2627 NM_018566 55432 Hs.567533 NM_018566 ENSG00000180667 YOD1 DUBA8|OTUD2|PRO0907 YOD1 deubiquitinase protein-coding 240.75-11 chr15 75744998 75745447 + 0.75 NA Intergenic AluSx|SINE|Alu -5145 NR_024595 100128285 Hs.604066 NR_024595 DNM1P35 DNM1DN8-2|DNM1DN8.2|DNM1DN8@|FKSG88 dynamin 1 pseudogene 35 pseudo 171.75-81 chr7 145557135 145557507 + 0.75 NA Intergenic L1MA8|LINE|L1 -721268 NM_022445 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 227.25-14 chr15 71685854 71686394 + 0.75 NA intron (NM_001286429, intron 2 of 11) L1MB3|LINE|L1 5415 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 147-89 chr5 108953156 108953396 + 0.75 NA intron (NR_146155, intron 11 of 19) intron (NR_146155, intron 11 of 19) 28670 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 219.75-36 chr7 4227293 4227762 + 0.75 NA intron (NM_001079653, intron 14 of 19) intron (NM_001079653, intron 14 of 19) -92690 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 155-16 chr11 74391779 74392107 + 0.75 NA intron (NM_173582, intron 1 of 13) intron (NM_173582, intron 1 of 13) 6490 NM_173582 283209 Hs.26612 NM_173582 ENSG00000165434 PGM2L1 BM32A|PMMLP phosphoglucomutase 2 like 1 protein-coding 290.5-6 chr13 87405805 87406580 + 0.75 NA Intergenic Intergenic 212548 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 159.5-86 chr7 48772374 48772814 + 0.75 NA Intergenic Intergenic -151953 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 191.25-53 chr5 12545414 12545796 + 0.75 NA Intergenic Intergenic -29252 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 149.75-18 chr11 107674428 107674692 + 0.75 NA Intergenic L1MD2|LINE|L1 37496 NM_003063 6588 Hs.334629 NM_003063 ENSG00000170290 SLN - sarcolipin protein-coding 245.25-20 chr5 62006090 62006560 + 0.75 NA Intergenic MER5A|DNA|hAT-Charlie -270627 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 209.75-30 chr4 64985671 64986216 + 0.75 NA intron (NR_033976, intron 1 of 6) L3|LINE|CR1 18557 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 233-4 chr10 100500815 100501459 + 0.75 NA intron (NM_015490, intron 11 of 25) AluSq2|SINE|Alu 18724 NM_015490 25956 Hs.18889 NM_015490 ENSG00000075826 SEC31B SEC31B-1|SEC31L2 SEC31 homolog B, COPII coat complex component protein-coding 161.25-14 chr11 114743811 114744076 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 65416 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 207.75-42 chr7 28830330 28830761 + 0.75 NA Intergenic Intergenic 127785 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 149.75-88 chr6 148899534 148899794 + 0.75 NA intron (NM_005715, intron 2 of 7) intron (NM_005715, intron 2 of 7) 65020 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 172.75-6 chr1 247666545 247666847 + 0.75 NA Intergenic Intergenic 6345 NM_001005487 441933 Hs.553834 NM_001005487 ENSG00000197437 OR13G1 OR1-37 olfactory receptor family 13 subfamily G member 1 protein-coding 160.75-109 chr9 34524732 34525090 + 0.75 NA Intergenic L2|LINE|L2 -1921 NM_198573 375704 Hs.522085 NM_198573 ENSG00000168913 ENHO C9orf165|UNQ470 energy homeostasis associated protein-coding 254.25-10 chr21 33279644 33280118 + 0.75 NA exon (NM_000628, exon 4 of 7) exon (NM_000628, exon 4 of 7) 13514 NM_000628 3588 Hs.654593 NM_000628 ENSG00000243646 IL10RB CDW210B|CRF2-4|CRFB4|D21S58|D21S66|IL-10R2 interleukin 10 receptor subunit beta protein-coding 147.25-50 chr20 15225531 15225813 + 0.75 NA intron (NM_001033087, intron 1 of 13) L1ME4b|LINE|L1 28832 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 182-25 chr18 348441 348776 + 0.75 NA intron (NM_130386, intron 3 of 9) intron (NM_130386, intron 3 of 9) -80561 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 214.25-6 chr11 80946822 80947486 + 0.75 NA Intergenic MIRc|SINE|MIR -184351 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 177.5-4 chr1 67652445 67652682 + 0.75 NA Intergenic Intergenic -32638 NM_001199742 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 176.75-6 chr1 171719593 171719935 + 0.75 NA intron (NM_003762, intron 3 of 7) intron (NM_003762, intron 3 of 7) 22301 NM_003762 8674 Hs.6651 NM_003762 ENSG00000117533 VAMP4 VAMP-4|VAMP24 vesicle associated membrane protein 4 protein-coding 146.5-31 chr15 43001610 43001870 + 0.75 NA intron (NM_174916, intron 32 of 46) intron (NM_174916, intron 32 of 46) -80962 NM_173500 146057 Hs.646511 NM_173500 ENSG00000128881 TTBK2 SCA11|TTBK tau tubulin kinase 2 protein-coding 180-49 chr4 56278857 56279313 + 0.75 NA intron (NM_020722, intron 3 of 10) intron (NM_020722, intron 3 of 10) 108406 NM_001323890 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 278-12 chr8 69813014 69813667 + 0.75 NA intron (NM_001146009, intron 1 of 7) intron (NM_001146009, intron 1 of 7) 19829 NM_001146009 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 243.25-22 chr4 93376306 93376666 + 0.75 NA intron (NM_001286838, intron 7 of 14) L1MC5|LINE|L1 -452267 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 150-58 chr3 58651245 58651567 + 0.75 NA intron (NM_138805, intron 3 of 9) intron (NM_138805, intron 3 of 9) 15368 NM_138805 131177 Hs.61265 NM_138805 ENSG00000198643 FAM3D EF7|OIT1 family with sequence similarity 3 member D protein-coding 253.75-4 chr10 98147551 98148084 + 0.75 NA intron (NM_001351012, intron 1 of 8) L1MA4|LINE|L1 13160 NM_001351015 27291 Hs.419800 NM_014472 ENSG00000166024 R3HCC1L C10orf28|GIDRP86|GIDRP88|PSORT R3H domain and coiled-coil containing 1 like protein-coding 158.75-16 chr12 121219687 121219960 + 0.75 NA intron (NR_046372, intron 2 of 12) (GATA)n|Simple_repeat|Simple_repeat 9694 NM_001256796 5025 Hs.321709 NM_002560 ENSG00000135124 P2RX4 P2X4|P2X4R purinergic receptor P2X 4 protein-coding 154-96 chr6 166916582 166916852 + 0.75 NA Intergenic MER65-int|LTR|ERV1 13019 NR_046644 100861523 Hs.634640 NR_046644 RPS6KA2-AS1 - RPS6KA2 antisense RNA 1 ncRNA 193.5-33 chr2 6274544 6274931 + 0.75 NA Intergenic Intergenic 100685 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 177.5-61 chr8 121083977 121084345 + 0.75 NA Intergenic UCON39|DNA|TcMar-Tigger -272115 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 226-31 chr7 91067489 91067937 + 0.75 NA intron (NM_012395, intron 10 of 13) intron (NM_012395, intron 10 of 13) -196720 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 187.75-32 chr19 29153509 29153992 + 0.75 NA Intergenic Intergenic 59401 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 183.25-52 chr4 58098883 58099170 + 0.75 NA Intergenic Intergenic 437302 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 159.75-47 chr2 36189545 36190013 + 0.75 NA Intergenic L1MB7|LINE|L1 165791 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 209-3 chr1 80534077 80534622 + 0.75 NA Intergenic Intergenic -1406 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 187-18 chr2 13804316 13804834 + 0.75 NA Intergenic Intergenic 596383 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 249.75-2 chr10 5267905 5268353 + 0.75 NA intron (NR_149060, intron 1 of 1) L1M4|LINE|L1 3107 NR_149060 110806285 NR_149060 ENSG00000224034 LINC02561 - long intergenic non-protein coding RNA 2561 ncRNA 417.25-2 chr4 12696878 12697827 + 0.75 NA Intergenic L1ME2z|LINE|L1 473901 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 162.5-52 chr22 41774787 41775032 + 0.75 NA intron (NM_152513, intron 20 of 30) intron (NM_152513, intron 20 of 30) -25713 NM_001304797 79879 Hs.474991 NM_024821 ENSG00000100147 CCDC134 - coiled-coil domain containing 134 protein-coding 176-69 chr9 21469673 21469945 + 0.75 NA intron (NR_152878, intron 2 of 2) intron (NR_152878, intron 2 of 2) 12504 NM_176891 338376 Hs.682604 NM_176891 ENSG00000184995 IFNE IFN-E|IFNE1|IFNT1|INFE1|PRO655 interferon epsilon protein-coding 210.75-27 chr20 18316825 18317228 + 0.75 NA TTS (NM_003434) TTS (NM_003434) 28499 NM_001352462 7692 Hs.472221 NM_003434 ENSG00000125846 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 213.5-11 chr11 98096758 98097072 + 0.75 NA Intergenic Intergenic -924034 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 294-7 chr8 71576702 71577305 + 0.75 NA Intergenic L1ME1|LINE|L1 -28909 NM_001370333 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 190.25-41 chr6 1164050 1164484 + 0.75 NA Intergenic L1MA9|LINE|L1 -62935 NR_027116 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 156.75-9 chr1 223230489 223230936 + 0.75 NA intron (NM_017982, intron 5 of 8) MIRb|SINE|MIR -87464 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 203.5-7 chr1 224390400 224390816 + 0.75 NA intron (NM_025160, intron 13 of 13) intron (NM_025160, intron 13 of 13) 7703 NR_039896 100616468 NR_039896 ENSG00000266618 MIR4742 mir-4742 microRNA 4742 ncRNA 177.25-57 chr5 45259239 45259526 + 0.75 NA 3' UTR (NM_021072, exon 8 of 8) 3' UTR (NM_021072, exon 8 of 8) 436998 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 256-7 chr20 50455123 50455615 + 0.75 NA Intergenic AluSq2|SINE|Alu -54952 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 181.75-33 chr2 123797088 123797514 + 0.75 NA Intergenic L1MB4|LINE|L1 227873 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 179-48 chr4 104604648 104605078 + 0.75 NA intron (NR_125926, intron 1 of 9) L1M3a|LINE|L1 -109969 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 166.25-50 chr4 156642994 156643349 + 0.75 NA Intergenic Intergenic 328628 NM_016205 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 208-39 chr8 128411056 128411561 + 0.75 NA intron (NR_121672, intron 6 of 7) intron (NR_121672, intron 6 of 7) 153371 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 279-7 chr6 71644049 71644645 + 0.75 NA Intergenic L1MA7|LINE|L1 223320 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 193.25-65 chr9 18214010 18214327 + 0.75 NA Intergenic Intergenic -259985 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 224.25-17 chr2 13793950 13794368 + 0.75 NA Intergenic Intergenic 606799 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 313.25-6 chr6 47280883 47281497 + 0.75 NA intron (NM_014452, intron 3 of 5) L1MC4|LINE|L1 28715 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 429.75-3 chr6 75665667 75666670 + 0.75 NA intron (NM_001100409, intron 8 of 22) (TA)n|Simple_repeat|Simple_repeat 64288 NM_015571 26054 Hs.485784 NM_015571 ENSG00000112701 SENP6 SSP1|SUSP1 SUMO specific peptidase 6 protein-coding 200-47 chr9 24727261 24727698 + 0.75 NA Intergenic L2a|LINE|L2 -181582 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 184-21 chr17 62025258 62025578 + 0.75 NA intron (NM_005121, intron 8 of 29) AluSx3|SINE|Alu 39860 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 166.5-66 chr5 106479127 106479358 + 0.75 NA Intergenic L1P3|LINE|L1 531772 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 196.75-34 chr3 47080205 47080548 + 0.75 NA intron (NM_014159, intron 12 of 20) intron (NM_014159, intron 12 of 20) 68834 NR_024046 100129354 Hs.201522 NR_024046 NRADDP - neurotrophin receptor associated death domain, pseudogene pseudo 188.25-53 chr6 150415131 150415638 + 0.75 NA Intergenic Intergenic 46372 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 217.25-32 chr3 118053001 118053293 + 0.75 NA Intergenic L1MEf|LINE|L1 -362222 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 217-4 chr1 194774153 194774692 + 0.75 NA Intergenic Intergenic 1314293 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 171-5 chr1 184242349 184242826 + 0.75 NA Intergenic Intergenic -144442 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 182.75-72 chr8 59414349 59414630 + 0.75 NA Intergenic L1MC3|LINE|L1 295279 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 167.75-56 chr3 117935364 117935772 + 0.75 NA Intergenic Intergenic -244643 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 280.75-5 chr17 76765032 76765601 + 0.75 NA intron (NR_148240, intron 9 of 13) L1MB8|LINE|L1 27815 NM_001242537 79157 Hs.73965 NM_024311 ENSG00000092931 MFSD11 ET major facilitator superfamily domain containing 11 protein-coding 221.75-38 chr9 103026789 103027266 + 0.75 NA Intergenic Intergenic 31694 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 158-2 chr1 78946209 78946435 + 0.75 NA exon (NM_022159, exon 3 of 15) exon (NM_022159, exon 3 of 15) 60408 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 170.25-37 chr2 197977822 197978078 + 0.75 NA intron (NM_006226, intron 1 of 5) L2c|LINE|L2 173357 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 247.5-5 chr1 213960995 213961556 + 0.75 NA intron (NR_037850, intron 2 of 5) intron (NR_037850, intron 2 of 5) 24878 NR_037850 100505832 Hs.664625 NR_037850 PROX1-AS1 - PROX1 antisense RNA 1 ncRNA 171-43 chr3 147066869 147067215 + 0.75 NA Intergenic MER61-int|LTR|ERV1 145119 NR_135560 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 244.75-8 chr14 86437755 86438358 + 0.75 NA Intergenic Intergenic -467722 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 157.5-38 chr16 66676100 66676311 + 0.75 NA intron (NM_181521, intron 1 of 3) intron (NM_181521, intron 1 of 3) 20538 NM_178818 146223 Hs.643961 NM_178818 ENSG00000183723 CMTM4 CKLFSF4 CKLF like MARVEL transmembrane domain containing 4 protein-coding 307 chr10 54539460 54540003 + 0.75 NA intron (NM_001142771, intron 2 of 34) L1P4|LINE|L1 53501 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 264.25-14 chr22 38582241 38582711 + 0.75 NA 3' UTR (NM_001291030, exon 17 of 17) 3' UTR (NM_001291030, exon 17 of 17) 11976 NR_134627 105373031 Hs.144041 NR_134627 LOC105373031 - uncharacterized LOC105373031 ncRNA 182.25-3 chr1 83608355 83608653 + 0.75 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 162450 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 221-23 chr4 114100929 114101351 + 0.75 NA Intergenic Intergenic -121493 NM_024590 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 189.5-44 chr3 123516820 123517229 + 0.75 NA intron (NM_001329786, intron 3 of 5) intron (NM_001329786, intron 3 of 5) 67593 NM_001329787 201562 Hs.705480 NM_198402 ENSG00000206527 HACD2 PTPLB 3-hydroxyacyl-CoA dehydratase 2 protein-coding 228.75-7 chr13 96342516 96343152 + 0.75 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) -84395 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 253.75-25 chr7 43711202 43711656 + 0.75 NA non-coding (NR_146941, exon 2 of 10) non-coding (NR_146941, exon 2 of 10) 18094 NM_001371317 205-19 chr16 75511412 75511908 + 0.75 NA Intergenic (ATTT)n|Simple_repeat|Simple_repeat -16219 NR_163481 4166 Hs.655622 NM_021615 ENSG00000183196 CHST6 C-GlcNAc6ST|GST4-beta|MCDC1|glcNAc6ST-5|gn6st-5|hCGn6ST carbohydrate sulfotransferase 6 protein-coding 184.75-41 chr2 39990613 39991056 + 0.75 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 73200 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 213-30 chr6 118274104 118274756 + 0.75 NA intron (NM_001029858, intron 4 of 7) AluSx1|SINE|Alu 188527 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 161.25-27 chr16 59586250 59586556 + 0.75 NA Intergenic Intergenic 168788 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 214.75-13 chr10 93023632 93024085 + 0.75 NA intron (NM_001319195, intron 20 of 21) intron (NM_001319195, intron 20 of 21) -36940 NM_183374 340665 Hs.369993 NM_183374 ENSG00000187553 CYP26C1 FFDD4 cytochrome P450 family 26 subfamily C member 1 protein-coding 219.75-28 chr3 53174943 53175586 + 0.75 NA intron (NM_001354679, intron 2 of 18) intron (NM_001354679, intron 2 of 18) 6561 NM_001354676 5580 Hs.155342 NM_006254 ENSG00000163932 PRKCD ALPS3|CVID9|MAY1|PKCD|nPKC-delta protein kinase C delta protein-coding 162.5-61 chr3 187459560 187459870 + 0.75 NA Intergenic Intergenic 12669 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 165-40 chr2 36652811 36653045 + 0.75 NA Intergenic L1ME2z|LINE|L1 -43762 NM_001177969 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 148.25-105 chrX 140425947 140426369 + 0.75 NA Intergenic L3|LINE|CR1 78902 NM_005634 6658 Hs.157429 NM_005634 ENSG00000134595 SOX3 GHDX|MRGH|PHP|PHPX|SOXB SRY-box transcription factor 3 protein-coding 285.5-7 chr2 19431679 19432116 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR -73274 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 186.25-27 chr2 124012756 124013109 + 0.75 NA non-coding (NR_147976, exon 3 of 3) non-coding (NR_147976, exon 3 of 3) 12242 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 248-3 chr11 105539533 105540064 + 0.75 NA Intergenic Intergenic -70275 NM_001077243 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 235.5-22 chr3 115143246 115143619 + 0.75 NA intron (NM_001348800, intron 1 of 11) FLAM_A|SINE|Alu 3856 NM_001348801 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 171.75-33 chr17 55552140 55552576 + 0.75 NA Intergenic L1MEd|LINE|L1 -130523 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 211.5-10 chr10 81032759 81033125 + 0.75 NA Intergenic L1PA16|LINE|L1 383145 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 179.25-17 chr11 30666175 30666553 + 0.75 NA Intergenic Intergenic -80011 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 210.25 chr1 24653858 24654271 + 0.75 NA intron (NM_001366594, intron 8 of 17) intron (NM_001366594, intron 8 of 17) 10485 NM_001366596 10250 Hs.18192 NM_005839 ENSG00000133226 SRRM1 160-KD|POP101|SRM160 serine and arginine repetitive matrix 1 protein-coding 245.75-5 chr11 97176652 97177298 + 0.75 NA Intergenic Intergenic 668550 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 202.25-27 chr18 1783002 1783460 + 0.75 NA Intergenic Intergenic -423602 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 151.5-83 chr5 143730632 143730851 + 0.75 NA Intergenic Intergenic 50881 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 171.5-108 chrX 126709555 126710081 + 0.75 NA Intergenic MIRb|SINE|MIR -109911 NM_001122716 100130613 Hs.130370 NM_001122716 ENSG00000183631 PRR32 CXorf64 proline rich 32 protein-coding 169.5-86 chr7 64674606 64674861 + 0.75 NA intron (NM_016220, intron 2 of 6) L1PA15|LINE|L1 -4331 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 159.75-16 chr10 75325469 75325901 + 0.75 NA intron (NR_038226, intron 2 of 3) L1MEg|LINE|L1 29302 NR_038223 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 179.25-65 chr5 165504177 165504623 + 0.75 NA Intergenic Intergenic 1034121 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 236.25-20 chr4 41961865 41962475 + 0.75 NA Intergenic Intergenic -19586 NM_001029955 285429 Hs.213307 NM_001029955 ENSG00000182308 DCAF4L1 WDR21B DDB1 and CUL4 associated factor 4 like 1 protein-coding 149-32 chr18 56753100 56753335 + 0.75 NA intron (NM_015285, intron 14 of 27) intron (NM_015285, intron 14 of 27) 101832 NM_015285 23335 Hs.465213 NM_015285 ENSG00000091157 WDR7 TRAG WD repeat domain 7 protein-coding 187-16 chr18 62113339 62113927 + 0.75 NA intron (NM_176787, intron 15 of 30) intron (NM_176787, intron 15 of 30) 73423 NM_012327 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 218-14 chr22 27494045 27494429 + 0.75 NA Intergenic MIR3|SINE|MIR 183586 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 149.75-31 chr17 62732446 62732771 + 0.75 NA intron (NM_001288780, intron 7 of 10) L1ME3E|LINE|L1 26402 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 163.25-33 chr18 10079679 10079965 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger 165806 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 267-10 chr5 141026365 141026900 + 0.75 NA Intergenic Intergenic -24744 NM_013340 29930 Hs.278950 NM_013340 ENSG00000171815 PCDHB1 PCDH-BETA1 protocadherin beta 1 protein-coding 250.5-17 chr21 30279738 30280198 + 0.75 NA Intergenic Intergenic 2982 NM_001085455 643803 Hs.580883 NM_001085455 ENSG00000188694 KRTAP24-1 KAP24.1 keratin associated protein 24-1 protein-coding 152.5-16 chr12 14063009 14063445 + 0.75 NA Intergenic Intergenic -82871 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 189.25-38 chr4 103345230 103345616 + 0.75 NA Intergenic Intergenic -79619 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 158.5-26 chr15 27788818 27789199 + 0.75 NA intron (NM_001300984, intron 22 of 22) L1M4a2|LINE|L1 310307 NM_000275 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 165.5-51 chr2 146702345 146702728 + 0.75 NA Intergenic L1MA1|LINE|L1 115479 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 164.25-8 chr1 201769118 201769507 + 0.75 NA intron (NM_001167738, intron 1 of 26) intron (NM_001167738, intron 1 of 26) 29412 NM_001167738 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 217.25-20 chr19 40520560 40521080 + 0.75 NA intron (NM_020971, intron 16 of 35) intron (NM_020971, intron 16 of 35) -9671 NM_025213 57731 Hs.32706 NM_020971 ENSG00000160460 SPTBN4 CMND|NEDHND|QV|SPNB4|SPTBN3 spectrin beta, non-erythrocytic 4 protein-coding 251-6 chr2 97773256 97773827 + 0.75 NA intron (NM_015348, intron 32 of 40) intron (NM_015348, intron 32 of 40) 39135 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 178.5-50 chr4 30496696 30497179 + 0.75 NA Intergenic L1PA6|LINE|L1 -223432 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 230.5-25 chr5 26245026 26245605 + 0.75 NA Intergenic Intergenic 793271 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 154.25-5 chr1 234968914 234969312 + 0.75 NA Intergenic Intergenic -5114 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 224.75-6 chr10 91035418 91035824 + 0.75 NA intron (NR_134319, intron 1 of 2) intron (NR_134319, intron 1 of 2) 2455 NR_134319 105378430 Hs.512240 NR_134319 LOC105378430 - uncharacterized LOC105378430 ncRNA 167.75-46 chr2 14470970 14471321 + 0.75 NA Intergenic L1MA8|LINE|L1 -70187 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 184.5-17 chr11 29345054 29345483 + 0.75 NA Intergenic L1ME4c|LINE|L1 -249145 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 152.5-79 chr4 71417900 71418257 + 0.75 NA intron (NM_003759, intron 4 of 22) intron (NM_003759, intron 4 of 22) 79025 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 178.75-35 chr20 10555709 10556090 + 0.75 NA intron (NM_001009608, intron 2 of 7) intron (NM_001009608, intron 2 of 7) 93796 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 213.5-26 chr2 170314572 170314941 + 0.75 NA intron (NM_001083615, intron 7 of 33) intron (NM_001083615, intron 7 of 33) 36187 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 210.75-25 chr18 4152140 4152541 + 0.75 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -112262 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 172.5-76 chr7 41896311 41896680 + 0.75 NA Intergenic L1M7|LINE|L1 -193405 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 256.25-6 chr11 4194605 4195234 + 0.75 NA intron (NR_047550, intron 1 of 1) L1MC4|LINE|L1 7767 NR_047550 100506082 Hs.445705 NR_047550 ENSG00000254480 LINC02749 - long intergenic non-protein coding RNA 2749 ncRNA 251.5-11 chr14 86751436 86751807 + 0.75 NA Intergenic L1MA3|LINE|L1 -154157 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 158-9 chr10 100669452 100669859 + 0.75 NA Intergenic Intergenic -65741 NM_001304569 5076 Hs.155644 NM_000278 ENSG00000075891 PAX2 FSGS7|PAPRS paired box 2 protein-coding 154.25-13 chr10 65322476 65322834 + 0.75 NA Intergenic L1ME1|LINE|L1 -248770 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 255.75-16 chr8 139092008 139092562 + 0.75 NA Intergenic Intergenic -178244 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 146.75-113 chr7 103491963 103492247 + 0.75 NA intron (NM_005045, intron 57 of 64) intron (NM_005045, intron 57 of 64) -45898 NR_135802 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 180.25-54 chr5 28497206 28497640 + 0.75 NA Intergenic Intergenic -209758 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 213.25-15 chr17 31163371 31163763 + 0.75 NA intron (NM_001042492, intron 4 of 57) intron (NM_001042492, intron 4 of 57) 68590 NM_001128147 4763 Hs.113577 NM_000267 ENSG00000196712 NF1 NFNS|VRNF|WSS neurofibromin 1 protein-coding 185.25-25 chr15 49564290 49564537 + 0.75 NA intron (NM_001330293, intron 8 of 10) L1PA16|LINE|L1 56405 NM_152647 196951 Hs.712959 NM_152647 ENSG00000166262 FAM227B C15orf33 family with sequence similarity 227 member B protein-coding 151.5-37 chr17 34261887 34262144 + 0.75 NA Intergenic L1MB2|LINE|L1 6730 NM_002982 6347 Hs.303649 NM_002982 ENSG00000108691 CCL2 GDCF-2|HC11|HSMCR30|MCAF|MCP-1|MCP1|SCYA2|SMC-CF C-C motif chemokine ligand 2 protein-coding 220.75-17 chr2 98662576 98663000 + 0.75 NA intron (NM_001160154, intron 2 of 12) intron (NM_001160154, intron 2 of 12) 685 NM_001160154 11320 Hs.177576 NM_012214 ENSG00000071073 MGAT4A GNT-IV|GNT-IVA|GnT-4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A protein-coding 179.5-51 chr3 2136316 2136580 + 0.75 NA intron (NR_046555, intron 1 of 2) intron (NR_046555, intron 1 of 2) 7793 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 203-29 chr3 173740758 173741332 + 0.75 NA intron (NM_001365928, intron 3 of 6) intron (NM_001365928, intron 3 of 6) 156611 NM_001365927 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 236.75-17 chr3 71560442 71561016 + 0.75 NA intron (NR_146142, intron 2 of 19) L1MB7|LINE|L1 -17172 NM_001244816 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 151.5-11 chr10 45650858 45651210 + 0.75 NA intron (NM_174890, intron 4 of 9) intron (NM_174890, intron 4 of 9) 21698 NM_001282905 93550 Hs.89029 NM_174890 ENSG00000172671 ZFAND4 ANUBL1 zinc finger AN1-type containing 4 protein-coding 156.75 chr1 10212926 10213162 + 0.75 NA intron (NM_001365952, intron 1 of 48) intron (NM_001365952, intron 1 of 48) 1428 NM_001365952 23095 Hs.97858 NM_015074 ENSG00000054523 KIF1B CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1 kinesin family member 1B protein-coding 192.75-22 chr14 88299071 88299481 + 0.75 NA intron (NM_021161, intron 1 of 6) intron (NM_021161, intron 1 of 6) 23993 NM_138317 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 188.5-43 chr3 167715774 167716096 + 0.75 NA intron (NM_145859, intron 3 of 8) L1MA3|LINE|L1 18907 NM_145860 11235 Hs.478150 NM_007217 ENSG00000114209 PDCD10 CCM3|TFAR15 programmed cell death 10 protein-coding 299.5-2 chr11 87158255 87159008 + 0.75 NA intron (NR_033149, intron 4 of 13) AluY|SINE|Alu 120697 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 195.5-54 chr5 41418810 41419133 + 0.75 NA intron (NM_001005473, intron 1 of 2) intron (NM_001005473, intron 1 of 2) 91630 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 241.75-30 chrX 30718513 30719265 + 0.75 NA intron (NM_001128127, intron 13 of 19) intron (NM_001128127, intron 13 of 19) 65530 NM_001128127 2710 Hs.1466 NM_000167 ENSG00000198814 GK GK1|GKD glycerol kinase protein-coding 203.25-26 chr3 33258504 33258909 + 0.75 NA Intergenic L1M5|LINE|L1 -18319 NR_146122 25827 Hs.475872 NM_012157 ENSG00000153558 FBXL2 FBL2|FBL3 F-box and leucine rich repeat protein 2 protein-coding 243-6 chr14 62107589 62108072 + 0.75 NA 3' UTR (NM_001367650, exon 7 of 7) 3' UTR (NM_001367650, exon 7 of 7) -9527 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 214.5-28 chr20 56251603 56252231 + 0.75 NA Intergenic MER5A1|DNA|hAT-Charlie 3185 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 179-44 chr4 48775635 48776248 + 0.75 NA intron (NM_015030, intron 1 of 63) intron (NM_015030, intron 1 of 63) 4358 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 215-35 chr8 67785124 67785640 + 0.75 NA Intergenic Intergenic -39022 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 171.75-27 chr15 56446167 56446462 + 0.75 NA TTS (NM_001286449) TTS (NM_001286449) 18823 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 211.5-4 chr1 93146490 93146992 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR 33672 NR_030761 50999 Hs.482873 NM_016040 ENSG00000117500 TMED5 CGI-100|p24g2|p28 transmembrane p24 trafficking protein 5 protein-coding 332.25-4 chr5 109142116 109143218 + 0.75 NA intron (NR_146155, intron 17 of 19) intron (NR_146155, intron 17 of 19) 183702 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 210-22 chr2 19812214 19812576 + 0.75 NA Intergenic Intergenic -56459 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 196.5-12 chr12 83299010 83299359 + 0.75 NA Intergenic L2a|LINE|L2 612029 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 228.25-8 chr16 79352630 79353079 + 0.75 NA Intergenic MER20|DNA|hAT-Charlie 247883 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 272.5-9 chr20 53754649 53755303 + 0.75 NA Intergenic Intergenic 120733 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 198-38 chr5 156403695 156404186 + 0.75 NA intron (NM_001128209, intron 2 of 7) AluSz|SINE|Alu 76776 NM_001128209 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 175.5-64 chr3 123247194 123247595 + 0.75 NA intron (NM_012430, intron 5 of 6) intron (NM_012430, intron 5 of 6) 45451 NM_012430 26984 Hs.477361 NM_012430 ENSG00000121542 SEC22A SEC22L2 SEC22 homolog A, vesicle trafficking protein protein-coding 211.5-11 chr10 89016715 89017170 + 0.75 NA non-coding (NR_028035, exon 7 of 7) non-coding (NR_028035, exon 7 of 7) -23967 NR_028371 100302740 Hs.244139 NR_028371 FAS-AS1 FAS-AS|FASAS|SAF FAS antisense RNA 1 ncRNA 178.5-63 chr8 79108175 79108620 + 0.75 NA Intergenic Intergenic -223791 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 184.25-42 chr3 30621783 30622357 + 0.75 NA intron (NM_003242, intron 1 of 6) intron (NM_003242, intron 1 of 6) 15469 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 157.5-88 chr6 39690946 39691198 + 0.75 NA 3' UTR (NM_001351503, exon 4 of 4) 3' UTR (NM_001351503, exon 4 of 4) 34336 NM_001289020 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 167.25-34 chr2 32290455 32290887 + 0.75 NA intron (NM_032312, intron 2 of 5) intron (NM_032312, intron 2 of 5) 12767 NM_032312 84272 Hs.468099 NM_032312 ENSG00000119820 YIPF4 FinGER4|Nbla11189 Yip1 domain family member 4 protein-coding 338.5-5 chr3 80076092 80076718 + 0.75 NA Intergenic MER50|LTR|ERV1 -308407 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 211.5-37 chr3 189792603 189792964 + 0.75 NA intron (NM_001329146, intron 1 of 10) intron (NM_001329146, intron 1 of 10) 3124 NM_001329149 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 181.5-50 chr3 97405312 97405837 + 0.75 NA intron (NM_001080448, intron 6 of 17) intron (NM_001080448, intron 6 of 17) -34033 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 164.75-62 chr4 88403595 88404075 + 0.75 NA intron (NM_001165136, intron 8 of 21) L1MB4|LINE|L1 25096 NM_017912 55008 Hs.529317 NM_017912 ENSG00000138642 HERC6 - HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 protein-coding 233.5-15 chr22 28527454 28528203 + 0.75 NA intron (NM_001145418, intron 2 of 22) AluJb|SINE|Alu 67959 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 170.5-3 chr1 163596943 163597318 + 0.75 NA Intergenic MER4E|LTR|ERV1 -173939 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 244.25-3 chr10 62824546 62825217 + 0.75 NA Intergenic Intergenic -5714 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 161.25-71 chr8 115151883 115152196 + 0.75 NA Intergenic Intergenic 515974 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 231.5-6 chr14 47406865 47407295 + 0.75 NA intron (NM_001113498, intron 1 of 16) L1M5|LINE|L1 -63834 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 176.25-66 chr8 103238019 103238398 + 0.75 NA Intergenic Intergenic -60286 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 191.75-8 chr10 86010609 86010965 + 0.75 NA intron (NM_017551, intron 4 of 15) AluSx|SINE|Alu 254001 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 158-15 chr12 4335927 4336240 + 0.75 NA intron (NM_020375, intron 2 of 5) intron (NM_020375, intron 2 of 5) 14870 NM_020375 57103 Hs.504545 NM_020375 ENSG00000078237 TIGAR C12orf5|FR2BP TP53 induced glycolysis regulatory phosphatase protein-coding 185.5-21 chr12 85323123 85323532 + 0.75 NA Intergenic Intergenic 43107 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 163-48 chr2 146863139 146863487 + 0.75 NA Intergenic L1MEd|LINE|L1 276256 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 164.25-92 chr9 32875465 32875852 + 0.75 NA Intergenic Intergenic 92118 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 194.5-48 chr5 57973904 57974263 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL -74921 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 251.25-11 chr17 56773599 56774213 + 0.75 NA Intergenic MIR|SINE|MIR 60014 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 192.75-55 chr5 153308967 153309255 + 0.75 NA Intergenic L1M4b|LINE|L1 -181413 NM_001258019 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 279.75-16 chr8 29917982 29918456 + 0.75 NA Intergenic L1PB4|LINE|L1 -3294 NR_024473 286135 Hs.376840 NR_024473 ENSG00000253279 LINC02209 FAM183CP long intergenic non-protein coding RNA 2209 ncRNA 171-71 chr8 138868569 138868868 + 0.75 NA intron (NM_152888, intron 3 of 64) MIR|SINE|MIR 45323 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 154.25-25 chr12 54974149 54974401 + 0.75 NA promoter-TSS (NM_001261844) promoter-TSS (NM_001261844) -543 NR_147065 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|ITPRID3|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 168.25-36 chr2 103647545 103647889 + 0.75 NA Intergenic Intergenic -663288 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 168-14 chr10 92609616 92610154 + 0.75 NA intron (NM_004523, intron 6 of 21) AluSq|SINE|Alu 16755 NM_004523 3832 Hs.8878 NM_004523 ENSG00000138160 KIF11 EG5|HKSP|KNSL1|MCLMR|TRIP5 kinesin family member 11 protein-coding 182.75-48 chr4 59573361 59573781 + 0.75 NA Intergenic Intergenic 559998 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 182.5-32 chr20 29280315 29280751 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 136428 NR_037925 647476 Hs.274541 NR_037925 FRG2EP - FSHD region gene 2 family member E, pseudogene pseudo 174.5-19 chr11 86455311 86455688 + 0.75 NA intron (NM_001014811, intron 7 of 13) intron (NM_001014811, intron 7 of 13) 80612 NM_001156474 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 245.25-9 chr15 68528992 68529577 + 0.75 NA intron (NM_001324014, intron 1 of 12) intron (NM_001324014, intron 1 of 12) 10911 NM_001324014 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 148.5-27 chr14 67756457 67756673 + 0.75 NA intron (NM_015346, intron 35 of 41) L2a|LINE|L2 54679 NM_152443 145226 Hs.415322 NM_152443 ENSG00000139988 RDH12 LCA13|RP53|SDR7C2 retinol dehydrogenase 12 protein-coding 202-11 chr14 55903121 55903651 + 0.75 NA Intergenic Intergenic -106712 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 158.25-81 chr5 9075142 9075464 + 0.75 NA intron (NM_003966, intron 16 of 22) L1ME1|LINE|L1 -21408 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 172.75-28 chr16 72680571 72680934 + 0.75 NA Intergenic Intergenic -15782 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 281.75-12 chr4 43733906 43734377 + 0.75 NA Intergenic L1MA2|LINE|L1 -241598 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 205.5 chr1 59188476 59188783 + 0.75 NA Intergenic Intergenic -41822 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 214.5-35 chr4 31374132 31374528 + 0.75 NA Intergenic L2b|LINE|L2 -132214 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 199.5-2 chr1 200729340 200729891 + 0.75 NA Intergenic Intergenic -9957 NM_001297707 23271 Hs.23585 NM_203459 ENSG00000118200 CAMSAP2 CAMSAP1L1 calmodulin regulated spectrin associated protein family member 2 protein-coding 164.5-53 chr3 34639325 34639648 + 0.75 NA Intergenic Intergenic 754537 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 152.75-105 chr8 130106010 130106389 + 0.75 NA intron (NM_018482, intron 24 of 29) intron (NM_018482, intron 24 of 29) -21431 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 157.75-99 chr6 142883942 142884386 + 0.75 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 61012 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 182-9 chr10 67460408 67460698 + 0.75 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) -57143 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 183.5-19 chr15 23512662 23512953 + 0.75 NA Intergenic MLT-int|LTR|ERVL-MaLR 49324 NR_039731 100616275 NR_039731 ENSG00000265673 MIR4508 mir-4508 microRNA 4508 ncRNA 245.25-27 chr9 80426390 80427052 + 0.75 NA Intergenic Intergenic 451698 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 170.5-12 chr12 24199503 24199887 + 0.75 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -12726 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 214-24 chr3 169647277 169647763 + 0.75 NA intron (NM_001366473, intron 1 of 15) intron (NM_001366473, intron 1 of 15) 16192 NM_001205194 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 178-53 chr5 26732971 26733363 + 0.75 NA Intergenic Intergenic 305419 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 192.75-5 chr10 58851149 58851595 + 0.75 NA Intergenic L1MC1|LINE|L1 136357 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 223.75-3 chr1 118079489 118080075 + 0.75 NA intron (NM_206996, intron 15 of 48) L1M5|LINE|L1 105446 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 160.75-8 chr1 156601825 156602123 + 0.75 NA promoter-TSS (NM_015590) promoter-TSS (NM_015590) -487 NM_182679 54865 Hs.193832 NM_015590 ENSG00000160818 GPATCH4 GPATC4 G-patch domain containing 4 protein-coding 317.75-5 chr5 41701977 41702607 + 0.75 NA Intergenic L1MEg|LINE|L1 141365 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 162.25-34 chr2 157581517 157581823 + 0.75 NA intron (NM_001111031, intron 2 of 8) intron (NM_001111031, intron 2 of 8) 15890 NM_001111031 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 246.75-14 chr4 123250862 123251525 + 0.75 NA intron (NM_001345856, intron 14 of 15) intron (NM_001345856, intron 14 of 15) -145602 NM_199327 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 356.25-2 chr16 60054379 60055395 + 0.75 NA TTS (NR_110917) TTS (NR_110917) 199534 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 146.75-40 chr18 354649 354901 + 0.75 NA intron (NM_130386, intron 3 of 9) intron (NM_130386, intron 3 of 9) -86728 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 158.25-117 chr8 133967211 133967650 + 0.75 NA Intergenic Intergenic 80934 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 276.75-7 chr2 211268526 211269068 + 0.75 NA Intergenic Intergenic 651226 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 160.75-85 chr4 95369431 95369689 + 0.75 NA intron (NM_003728, intron 1 of 15) AluSz|SINE|Alu 179413 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 199.5-39 chr4 85700810 85701118 + 0.75 NA intron (NM_001025616, intron 2 of 9) intron (NM_001025616, intron 2 of 9) -21504 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 175.25-42 chr3 95004596 95005152 + 0.75 NA Intergenic MIR|SINE|MIR 66611 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 159.75-95 chr8 128231566 128231944 + 0.75 NA Intergenic L2a|LINE|L2 81639 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 287-7 chr5 160026691 160027158 + 0.75 NA intron (NM_003314, intron 2 of 7) L1M4a1|LINE|L1 17785 NM_003314 7265 Hs.519718 NM_003314 ENSG00000113312 TTC1 TPR1 tetratricopeptide repeat domain 1 protein-coding 203.75-16 chr20 8177197 8177584 + 0.75 NA intron (NM_182734, intron 2 of 32) MLT1A0|LTR|ERVL-MaLR 45124 NM_015192 23236 Hs.431173 NM_015192 ENSG00000182621 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B phospholipase C beta 1 protein-coding 169.5-52 chr3 28522775 28523095 + 0.75 NA intron (NM_001040432, intron 9 of 9) intron (NM_001040432, intron 9 of 9) -52343 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 161.5-3 chr1 96374006 96374327 + 0.75 NA promoter-TSS (NR_110693) promoter-TSS (NR_110693) -41 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 204.5-21 chr20 17263908 17264408 + 0.75 NA intron (NM_002594, intron 2 of 11) intron (NM_002594, intron 2 of 11) 37118 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 225.75-16 chr22 43919161 43919885 + 0.75 NA Intergenic Intergenic -4282 NM_025225 80339 Hs.654800 NM_025225 ENSG00000100344 PNPLA3 ADPN|C22orf20|iPLA(2)epsilon patatin like phospholipase domain containing 3 protein-coding 206.5-37 chr5 101425899 101426408 + 0.75 NA Intergenic Intergenic -522871 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 161-69 chr5 14319008 14319245 + 0.75 NA intron (NM_007118, intron 9 of 56) intron (NM_007118, intron 9 of 56) -144857 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 201.25-24 chr2 118144190 118144645 + 0.75 NA Intergenic AluJb|SINE|Alu 41969 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 246.25-36 chr8 66596219 66596758 + 0.75 NA intron (NM_001294282, intron 5 of 14) intron (NM_001294282, intron 5 of 14) 16730 NM_001294282 4603 Hs.445898 NM_001080416 ENSG00000185697 MYBL1 A-MYB|AMYB MYB proto-oncogene like 1 protein-coding 148.5-17 chr11 81154259 81154551 + 0.75 NA Intergenic Intergenic -391602 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 226.25-9 chr16 5530323 5530738 + 0.75 NA Intergenic Intergenic 85720 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 267-13 chr9 29752341 29752883 + 0.75 NA Intergenic Intergenic -539011 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 157.75-23 chr11 79772682 79773020 + 0.75 NA Intergenic MIRb|SINE|MIR -331821 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 203.5-66 chr6 157422914 157423255 + 0.75 NA intron (NM_024630, intron 1 of 8) intron (NM_024630, intron 1 of 8) 41894 NM_024630 79683 Hs.596214 NM_024630 ENSG00000175048 ZDHHC14 NEW1CP zinc finger DHHC-type containing 14 protein-coding 224-16 chr2 213613781 213614322 + 0.75 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -144016 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 273.75-8 chr3 106254979 106255653 + 0.75 NA Intergenic L1PA16|LINE|L1 -385915 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 161.25-58 chr5 63909704 63910054 + 0.75 NA Intergenic MER58A|DNA|hAT-Charlie 52413 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 282.25 chr10 112890678 112891147 + 0.75 NA Intergenic Tigger13a|DNA|TcMar-Tigger -59335 NM_001146286 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 151.25-15 chr11 88718344 88718618 + 0.75 NA intron (NM_001143831, intron 2 of 8) L1ME3G|LINE|L1 213905 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 237.25-19 chr5 131055119 131055725 + 0.75 NA Intergenic L1MA9|LINE|L1 109834 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 240.25-31 chrX 129218228 129218680 + 0.75 NA Intergenic L3|LINE|CR1 305036 NM_001282874 6594 Hs.152292 NM_003069 ENSG00000102038 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 247-7 chr12 102817391 102818060 + 0.75 NA intron (NR_033855, intron 3 of 4) Charlie2b|DNA|hAT-Charlie 6674 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 157-80 chr5 159930626 159930990 + 0.75 NA intron (NM_000679, intron 1 of 1) intron (NM_000679, intron 1 of 1) 14326 NM_000679 147 Hs.368632 NM_000679 ENSG00000170214 ADRA1B ADRA1|ALPHA1BAR adrenoceptor alpha 1B protein-coding 252.75-19 chr21 32228588 32229202 + 0.75 NA Intergenic L1MA9|LINE|L1 50154 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 200.75-11 chr12 15079527 15079984 + 0.75 NA Intergenic Intergenic -72168 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 184.25-48 chr4 37419834 37420105 + 0.75 NA intron (NM_001144990, intron 3 of 6) L1M5|LINE|L1 -33956 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 271.75-6 chr13 37427353 37427939 + 0.75 NA Intergenic L1M1|LINE|L1 57138 NR_125762 103695431 Hs.550637 NR_125762 ENSG00000230390 LINC01048 - long intergenic non-protein coding RNA 1048 ncRNA 226.25-17 chr22 24686675 24687079 + 0.75 NA Intergenic Intergenic -27730 NR_024593 646074 Hs.531306 NM_001025230 POM121L10P - POM121 transmembrane nucleoporin like 10, pseudogene pseudo 234.75-13 chr18 8072053 8072517 + 0.75 NA intron (NM_002845, intron 8 of 30) intron (NM_002845, intron 8 of 30) 294749 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 179-24 chr2 63682276 63682647 + 0.75 NA Intergenic L1MA2|LINE|L1 93310 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 151.25-81 chr6 168145624 168145834 + 0.75 NA Intergenic L1MA2|LINE|L1 -64172 NR_110312 79981 Hs.266746 NM_024919 ENSG00000153303 FRMD1 bA164L23.1 FERM domain containing 1 protein-coding 257.25-13 chr2 140079620 140080304 + 0.75 NA Intergenic AluSp|SINE|Alu 506723 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 200-6 chr10 25506752 25507216 + 0.75 NA intron (NM_020752, intron 5 of 10) MLT1I|LTR|ERVL-MaLR -144728 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 183.25-59 chr5 16162110 16162627 + 0.75 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 17423 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 247.75-2 chr10 100469124 100469510 + 0.75 NA intron (NM_003393, intron 1 of 5) intron (NM_003393, intron 1 of 5) 6308 NM_003393 7479 Hs.421281 NM_003393 ENSG00000075290 WNT8B - Wnt family member 8B protein-coding 185.5-41 chr2 236316831 236317157 + 0.75 NA Intergenic L1ME3A|LINE|L1 -52649 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 274.5-10 chr16 55109479 55109948 + 0.75 NA Intergenic Intergenic 178514 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 225.5-34 chr4 33687966 33688356 + 0.75 NA Intergenic Intergenic 351732 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 232-16 chr2 137146453 137146847 + 0.75 NA intron (NM_001316349, intron 5 of 27) MER106A|DNA|hAT-Charlie 381105 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 146-100 chr8 137125806 137126212 + 0.75 NA Intergenic L1PA10|LINE|L1 287579 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 188.5-66 chr7 89756446 89756804 + 0.75 NA Intergenic Intergenic -362775 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 155.25-49 chr2 222907330 222907568 + 0.75 NA intron (NM_004457, intron 3 of 16) intron (NM_004457, intron 3 of 16) 46413 NM_001354159 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 166-84 chr9 89187816 89188251 + 0.75 NA Intergenic AluJr|SINE|Alu -9215 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 197-32 chr4 98037203 98037590 + 0.75 NA intron (NM_174952, intron 5 of 10) L1ME3Cz|LINE|L1 106080 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 230.25-19 chr2 135249478 135249929 + 0.75 NA intron (NM_001286569, intron 13 of 21) THE1A|LTR|ERVL-MaLR 113075 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 258.5-12 chr2 30290423 30291106 + 0.75 NA Intergenic Intergenic -55882 NR_122048 285043 Hs.429119 NR_122048 LINC01936 - long intergenic non-protein coding RNA 1936 ncRNA 244-13 chr2 157076252 157076655 + 0.75 NA Intergenic Intergenic -181252 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 194.5-58 chr8 87132817 87133274 + 0.75 NA intron (NM_173538, intron 4 of 10) L1MEf|LINE|L1 266630 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 166-4 chr1 113748368 113748658 + 0.75 NA intron (NM_001323043, intron 3 of 18) HAL1|LINE|L1 10642 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 200.5-50 chr5 40520551 40521030 + 0.75 NA Intergenic Intergenic -159125 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 219.25-49 chr8 116994819 116995145 + 0.75 NA intron (NM_001172811, intron 2 of 9) intron (NM_001172811, intron 2 of 9) 44007 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 162.25-29 chr2 14522756 14523152 + 0.75 NA Intergenic Intergenic -109763 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 151.25-27 chr15 46737330 46737664 + 0.75 NA Intergenic Intergenic -446592 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 196.25-2 chr1 54821260 54821812 + 0.75 NA intron (NM_001110533, intron 9 of 9) L1M2|LINE|L1 15473 NM_001110533 163747 Hs.376018 NM_152607 ENSG00000162398 LEXM C1orf177|LEM lymphocyte expansion molecule protein-coding 262.25-2 chr1 190077863 190078323 + 0.75 NA Intergenic Intergenic 397917 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 210.75-9 chr10 84498082 84498466 + 0.75 NA intron (NM_001284240, intron 9 of 9) intron (NM_001284240, intron 9 of 9) 73105 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 212-43 chr8 140886668 140887104 + 0.75 NA intron (NR_148037, intron 4 of 34) L1MEi|LINE|L1 114118 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 243-10 chr2 122006612 122007310 + 0.75 NA Intergenic L1M5|LINE|L1 251310 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 200.5-8 chr10 82381895 82382284 + 0.75 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -149169 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 183.75-43 chr2 47921052 47921528 + 0.75 NA Intergenic Intergenic -15497 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 169.25-3 chr10 56472474 56472775 + 0.75 NA Intergenic L1MEb|LINE|L1 -111351 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 199-20 chr2 146366955 146367390 + 0.75 NA Intergenic Intergenic -219885 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 249.75 chr1 201858888 201859466 + 0.75 NA intron (NM_018085, intron 13 of 23) (TA)n|Simple_repeat|Simple_repeat -4196 NR_106797 102466724 NR_106797 ENSG00000277681 MIR6739 hsa-mir-6739 microRNA 6739 ncRNA 245-7 chr15 69184849 69185366 + 0.75 NA intron (NM_001324093, intron 2 of 5) intron (NM_001324093, intron 2 of 5) 24472 NM_001324092 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 180-39 chr20 55811943 55812426 + 0.75 NA Intergenic (TCCA)n|Simple_repeat|Simple_repeat 193335 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 152.5-44 chr18 30757839 30758123 + 0.75 NA Intergenic L1MA4|LINE|L1 284761 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 198.75-54 chr9 86415445 86415871 + 0.75 NA Intergenic L2a|LINE|L2 -61248 NM_024617 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 244.75-22 chr8 128184316 128184838 + 0.75 NA Intergenic Intergenic 34461 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 249.5-13 chr2 103570399 103571040 + 0.75 NA Intergenic MLT1B|LTR|ERVL-MaLR -586290 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 155-51 chr3 726344 726686 + 0.75 NA intron (NR_110118, intron 1 of 3) intron (NR_110118, intron 1 of 3) 134410 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 207-39 chr5 50826964 50827352 + 0.75 NA intron (NM_024615, intron 19 of 25) intron (NM_024615, intron 19 of 25) 143029 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 456.5 chr1 225240772 225241595 + 0.75 NA intron (NM_001367479, intron 43 of 85) intron (NM_001367479, intron 43 of 85) 186855 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 163-87 chr8 129489020 129489441 + 0.75 NA intron (NR_130917, intron 1 of 3) HAL1b|LINE|L1 -5088 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 215-33 chr8 14736766 14737166 + 0.75 NA intron (NM_139167, intron 1 of 7) L1PB1|LINE|L1 116544 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 154.25-9 chr10 34187870 34188238 + 0.75 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -415374 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 205.5-40 chr6 93372408 93372786 + 0.75 NA intron (NM_004440, intron 3 of 16) intron (NM_004440, intron 3 of 16) 46962 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 208.25-31 chr6 95785062 95785482 + 0.75 NA Intergenic Intergenic 207737 NM_024641 79694 Hs.734632 NM_024641 ENSG00000172469 MANEA ENDO|hEndo mannosidase endo-alpha protein-coding 221-36 chr8 135173395 135173855 + 0.75 NA Intergenic L2a|LINE|L2 -60506 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 179.25-46 chr3 14465809 14466355 + 0.75 NA intron (NR_103507, intron 6 of 13) AluSx1|SINE|Alu 63476 NM_001134368 6533 Hs.529488 NM_003043 ENSG00000131389 SLC6A6 TAUT solute carrier family 6 member 6 protein-coding 174.5-16 chr10 102979691 102979993 + 0.75 NA intron (NM_199076, intron 1 of 6) HAL1|LINE|L1 -61507 NR_160733 107984265 NR_160733 LOC107984265 - uncharacterized LOC107984265 ncRNA 161.5-69 chr4 95417881 95418246 + 0.75 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 130910 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 178-28 chr17 51246236 51246512 + 0.75 NA intron (NM_017643, intron 2 of 16) Tigger4|DNA|TcMar-Tigger 13675 NM_017643 54799 Hs.656803 NM_017643 ENSG00000011258 MBTD1 SA49P01 mbt domain containing 1 protein-coding 244.25-16 chr3 117938447 117939157 + 0.75 NA Intergenic L2a|LINE|L2 -247877 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 195-2 chr1 14043150 14043790 + 0.75 NA Intergenic L1MB3|LINE|L1 294055 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 191.5-29 chr2 32765393 32765789 + 0.75 NA intron (NM_017735, intron 13 of 19) Tigger1|DNA|TcMar-Tigger -59842 NR_027098 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 161.5-4 chr1 105759525 105759818 + 0.75 NA Intergenic MLT2A1|LTR|ERVL -140736 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 252.25-3 chr11 91503289 91503738 + 0.75 NA Intergenic Intergenic -634311 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 207.25-37 chr22 26596470 26596820 + 0.75 NA Intergenic Kanga1|DNA|TcMar-Tc2 -6513 NM_003595 8459 Hs.632768 NM_003595 ENSG00000128294 TPST2 TANGO13B|TPST-2 tyrosylprotein sulfotransferase 2 protein-coding 177.75-2 chr1 59701166 59701634 + 0.75 NA intron (NM_001350790, intron 15 of 16) L2c|LINE|L2 31896 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 205-34 chr3 142697052 142697571 + 0.75 NA intron (NM_001145319, intron 11 of 15) intron (NM_001145319, intron 11 of 15) -26723 NM_001251845 7220 Hs.250687 NM_003304 ENSG00000144935 TRPC1 HTRP-1|TRP1 transient receptor potential cation channel subfamily C member 1 protein-coding 183.25-81 chr9 101687577 101688030 + 0.75 NA intron (NM_133445, intron 1 of 8) intron (NM_133445, intron 1 of 8) 50777 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 155.25-10 chr10 64752961 64753255 + 0.75 NA Intergenic Kanga11a|DNA|TcMar-Tc2 -72420 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 267.25-9 chr5 174808339 174808763 + 0.75 NA Intergenic Intergenic 56817 NR_039777 100616202 NR_039777 ENSG00000266890 MIR4634 - microRNA 4634 ncRNA 156.75-31 chr13 32264792 32265148 + 0.75 NA intron (NM_023037, intron 53 of 60) intron (NM_023037, intron 53 of 60) 46984 NM_001136571 646799 Hs.569254 NM_001136571 ENSG00000189167 ZAR1L Z3CXXC7|ZAR2 zygote arrest 1 like protein-coding 233.5-4 chr14 66117104 66117663 + 0.75 NA Intergenic L2a|LINE|L2 -368988 NR_110307 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 203.5-37 chr3 4430305 4430911 + 0.75 NA intron (NM_001164674, intron 2 of 7) L2a|LINE|L2 36661 NM_182760 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 191.25-20 chr12 85901473 85901904 + 0.75 NA Intergenic L1M4a2|LINE|L1 27393 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 169.25-19 chr16 76523082 76523528 + 0.75 NA intron (NM_001322179, intron 17 of 22) intron (NM_001322179, intron 17 of 22) -111693 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 196.75-21 chr2 9466412 9466895 + 0.75 NA intron (NM_016207, intron 15 of 17) L1MB7|LINE|L1 -7898 NM_001320860 285148 Hs.667226 NM_001039613 ENSG00000134330 IAH1 - isoamyl acetate hydrolyzing esterase 1 (putative) protein-coding 164.5-44 chr20 5263877 5264240 + 0.75 NA Intergenic Intergenic 52674 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 196.5-27 chr2 119724851 119725317 + 0.75 NA Intergenic LTR78|LTR|ERV1 -34838 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 190.75-67 chr8 50158454 50158904 + 0.75 NA intron (NR_135798, intron 1 of 15) L1ME3E|LINE|L1 -5452 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 301.25-11 chr7 19007850 19008336 + 0.75 NA Intergenic Intergenic 109543 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 157.75-31 chr13 85644093 85644437 + 0.75 NA Intergenic Intergenic 155154 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 176.5-52 chr3 100612590 100612867 + 0.75 NA intron (NM_032787, intron 1 of 15) intron (NM_032787, intron 1 of 15) 3127 NM_032787 84873 Hs.334511 NM_032787 ENSG00000144820 ADGRG7 GPR128 adhesion G protein-coupled receptor G7 protein-coding 188.5-67 chr7 106732807 106733127 + 0.75 NA Intergenic Intergenic -71809 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 216.5-8 chr11 101036393 101036701 + 0.75 NA non-coding (NR_073142, exon 7 of 7) non-coding (NR_073142, exon 7 of 7) 92516 NR_073141 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 196.75-48 chr6 54586700 54587128 + 0.75 NA Intergenic Intergenic -259857 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 232.5-32 chr3 180357809 180358208 + 0.75 NA Intergenic AluSz|SINE|Alu -56165 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 251.5-21 chr4 59926933 59927361 + 0.75 NA Intergenic L1MA2|LINE|L1 913574 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 188.75-69 chr9 132546290 132546710 + 0.75 NA intron (NM_207417, intron 6 of 6) intron (NM_207417, intron 6 of 6) -36106 NM_020064 56751 Hs.283809 NM_020064 ENSG00000125492 BARHL1 - BarH like homeobox 1 protein-coding 158.5-42 chr2 49401265 49401598 + 0.75 NA Intergenic Intergenic -246904 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 207.25-44 chr5 5096976 5097435 + 0.75 NA Intergenic AluSz|SINE|Alu -18894 NR_134266 105374631 Hs.570964 NR_134266 ENSG00000250529 LINC02121 - long intergenic non-protein coding RNA 2121 ncRNA 263.25-23 chr5 178638795 178639203 + 0.75 NA Intergenic L1M5|LINE|L1 -11949 NM_020666 57396 Hs.406557 NM_020666 ENSG00000113240 CLK4 - CDC like kinase 4 protein-coding 287.5 chr1 18698622 18699248 + 0.75 NA intron (NM_001135254, intron 5 of 8) intron (NM_001135254, intron 5 of 8) 68089 NM_001135254 5081 Hs.113253 NM_002584 ENSG00000009709 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 189.75-62 chr5 141495545 141496015 + 0.75 NA intron (NM_018923, intron 2 of 3) (GTCTCT)n|Simple_repeat|Simple_repeat 6539 NM_032407 56097 Hs.368160 NM_018929 ENSG00000240764 PCDHGC5 PCDH-GAMMA-C5 protocadherin gamma subfamily C, 5 protein-coding 211.75-15 chr2 11570244 11570860 + 0.75 NA intron (NM_014668, intron 4 of 32) L1MC5|LINE|L1 27866 NM_033090 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 153.25-82 chr4 49120874 49121234 + 0.75 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 134412 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 289-5 chr3 69569571 69570314 + 0.75 NA Intergenic MIRb|SINE|MIR -169522 NM_001354604 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 237.5-35 chr9 101697180 101697722 + 0.75 NA intron (NM_133445, intron 1 of 8) intron (NM_133445, intron 1 of 8) 41129 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 228.5-14 chr11 90368695 90369041 + 0.75 NA intron (NR_104190, intron 1 of 6) intron (NR_104190, intron 1 of 6) 117636 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 184.25-37 chr20 39343745 39344157 + 0.75 NA Intergenic MIRb|SINE|MIR -119203 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 175-9 chr11 15267666 15268033 + 0.75 NA Intergenic L1MEc|LINE|L1 118747 NM_001278314 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 173.75-15 chr11 111839177 111839519 + 0.75 NA intron (NR_147984, intron 10 of 15) AluY|SINE|Alu 31933 NM_001352415 79796 Hs.745155 NM_024740 ENSG00000086848 ALG9 CDG1L|DIBD1|GIKANIS|LOH11CR1J ALG9 alpha-1,2-mannosyltransferase protein-coding 176-55 chr5 41367382 41367745 + 0.75 NA intron (NM_001005473, intron 2 of 2) L1PA10|LINE|L1 -106094 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 189.5-28 chr2 45636235 45636576 + 0.75 NA Intergenic MIR|SINE|MIR -15270 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 184.75-79 chr9 73669124 73669481 + 0.75 NA Intergenic L1ME3A|LINE|L1 517437 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 147-92 chr5 136577822 136578132 + 0.75 NA Intergenic Intergenic -212501 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 228-27 chr7 38861792 38862181 + 0.75 NA intron (NM_014396, intron 4 of 28) intron (NM_014396, intron 4 of 28) 47205 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 171.5-52 chr2 201191563 201191952 + 0.75 NA intron (NM_032977, intron 3 of 9) intron (NM_032977, intron 3 of 9) 8616 NM_001206524 843 Hs.5353 NM_001230 ENSG00000003400 CASP10 ALPS2|FLICE2|MCH4 caspase 10 protein-coding 238.5-6 chr1 188818909 188819453 + 0.75 NA Intergenic Intergenic 1375553 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 331.5-6 chr5 8974269 8975031 + 0.75 NA Intergenic L1MA4A|LINE|L1 79245 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 232.25-5 chr1 178969669 178970121 + 0.75 NA Intergenic MLT1F2|LTR|ERVL-MaLR -55909 NM_001324310 9917 Hs.5737 NM_014864 ENSG00000116199 FAM20B gxk1 FAM20B glycosaminoglycan xylosylkinase protein-coding 242.5-2 chr1 169917151 169917725 + 0.75 NA Intergenic L1M6|LINE|L1 -23479 NM_181093 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 154.75-50 chr2 174972548 174972810 + 0.75 NA intron (NR_038133, intron 1 of 11) Tigger20a|DNA|TcMar-Tigger 32574 NM_001822 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 150.5-13 chr1 197859487 197859749 + 0.75 NA Intergenic Intergenic -43012 NM_001024594 388722 Hs.61329 NM_001024594 ENSG00000203724 C1orf53 - chromosome 1 open reading frame 53 protein-coding 187.75-14 chr11 40781047 40781338 + 0.75 NA intron (NM_020929, intron 1 of 4) Tigger3a|DNA|TcMar-Tigger -488062 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 174 chr1 159636286 159636631 + 0.75 NA Intergenic L1ME4b|LINE|L1 48632 NM_001639 325 Hs.507080 NM_001639 ENSG00000132703 APCS HEL-S-92n|PTX2|SAP amyloid P component, serum protein-coding 293.5-12 chr6 168529706 168530323 + 0.75 NA intron (NM_001166412, intron 4 of 12) intron (NM_001166412, intron 4 of 12) 88830 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 173.5-45 chr21 30945674 30945960 + 0.75 NA Intergenic Charlie25|DNA|hAT-Charlie -64237 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 154-82 chr5 36379450 36379828 + 0.75 NA Intergenic MER46C|DNA|TcMar-Tigger -77737 NM_001323280 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 203.25-14 chr16 7669684 7670211 + 0.75 NA intron (NM_018723, intron 13 of 15) intron (NM_018723, intron 13 of 15) 337102 NM_145892 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 148.25-77 chr6 66969305 66969689 + 0.75 NA Intergenic L1MB3|LINE|L1 -1085854 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 238.5-32 chr5 94008508 94009106 + 0.75 NA intron (NR_028080, intron 3 of 8) intron (NR_028080, intron 3 of 8) 102856 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 272.75-8 chr2 59535926 59536315 + 0.75 NA Intergenic L1ME2|LINE|L1 318412 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 259.75-9 chr13 20049377 20049758 + 0.75 NA intron (NM_197968, intron 12 of 24) intron (NM_197968, intron 12 of 24) -53134 NR_126380 104355137 Hs.578016 NR_126380 ENSG00000236076 LINC01072 - long intergenic non-protein coding RNA 1072 ncRNA 148.25-38 chr18 8222117 8222369 + 0.75 NA intron (NM_002845, intron 14 of 30) intron (NM_002845, intron 14 of 30) 144791 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 200.5-5 chr10 74973988 74974409 + 0.75 NA intron (NM_001370142, intron 6 of 16) intron (NM_001370142, intron 6 of 16) -47535 NR_145812 109623471 NR_145812 SNORD172 - small nucleolar RNA, C/D box 172 snoRNA 154.25-81 chr7 148606059 148606336 + 0.75 NA intron (NM_145304, intron 1 of 2) intron (NM_145304, intron 1 of 2) 15431 NM_145304 202865 Hs.352212 NM_145304 ENSG00000170279 C7orf33 - chromosome 7 open reading frame 33 protein-coding 187.75-24 chr15 89701564 89702131 + 0.75 NA exon (NM_020212, exon 2 of 17) exon (NM_020212, exon 2 of 17) 11036 NM_001284395 56964 Hs.177557 NM_020212 ENSG00000140527 WDR93 - WD repeat domain 93 protein-coding 188-27 chr18 64107867 64108266 + 0.75 NA intron (NR_033881, intron 1 of 9) intron (NR_033881, intron 1 of 9) 3975 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 203.75-30 chr4 66286373 66286749 + 0.75 NA Intergenic L1ME3A|LINE|L1 9737 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 211.25-4 chr10 56422015 56422690 + 0.75 NA Intergenic ERVL-B4-int|LTR|ERVL -61079 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 157.5-40 chr17 73622636 73622904 + 0.75 NA intron (NM_001144952, intron 1 of 44) intron (NM_001144952, intron 1 of 44) 21675 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 174-60 chr6 150641177 150641435 + 0.75 NA intron (NM_001329804, intron 2 of 17) intron (NM_001329804, intron 2 of 17) 8342 NR_138140 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 189.5-76 chr8 136826715 136827216 + 0.75 NA intron (NR_147196, intron 4 of 5) MER63C|DNA|hAT-Blackjack 296167 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 226-26 chr6 126294564 126295119 + 0.75 NA Intergenic Charlie1a|DNA|hAT-Charlie -44948 NM_001286524 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 210.5-50 chr9 30015921 30016292 + 0.75 NA Intergenic Intergenic 392348 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 189-34 chr2 204397847 204398248 + 0.75 NA Intergenic Intergenic -147428 NM_001302769 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 228-19 chr4 30748364 30748834 + 0.75 NA intron (NM_032457, intron 1 of 2) MSTD|LTR|ERVL-MaLR 28230 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 235-7 chr12 32559089 32559502 + 0.75 NA intron (NM_001304480, intron 1 of 16) intron (NM_001304480, intron 1 of 16) 25002 NM_001304480 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 332.75-2 chr17 60473477 60474021 + 0.75 NA intron (NM_006380, intron 4 of 12) Kanga2_a|DNA|TcMar-Tc2 51260 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 270.25-13 chr22 24789355 24789876 + 0.75 NA Intergenic MER77|LTR|ERVL -14895 NM_001008496 440822 Hs.448343 NM_001008496 ENSG00000184571 PIWIL3 HIWI3 piwi like RNA-mediated gene silencing 3 protein-coding 259.75-17 chr7 14607383 14607790 + 0.75 NA intron (NM_001350717, intron 15 of 24) intron (NM_001350717, intron 15 of 24) 233864 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 202.75-36 chr5 38185860 38186259 + 0.75 NA Intergenic Intergenic 37579 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 180.75-14 chr12 21107778 21108154 + 0.75 NA Intergenic Tigger2|DNA|TcMar-Tigger -23228 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 191-9 chr10 115135430 115135993 + 0.75 NA intron (NM_001276282, intron 5 of 7) L1PA5|LINE|L1 42346 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 256.25-16 chr5 104122281 104122647 + 0.75 NA Intergenic Intergenic -559675 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 193.25-35 chr20 45657645 45657952 + 0.75 NA intron (NM_147197, intron 2 of 4) Tigger5|DNA|TcMar-Tigger 12441 NM_147197 259239 Hs.374924 NM_147197 ENSG00000180083 WFDC11 WAP11 WAP four-disulfide core domain 11 protein-coding 158.25-75 chr4 52670663 52671146 + 0.75 NA Intergenic Intergenic 11498 NR_125363 643783 Hs.631514 NR_125363 ENSG00000248866 USP46-AS1 - USP46 antisense RNA 1 ncRNA 181.5-30 chr16 60025185 60025604 + 0.75 NA intron (NR_110917, intron 1 of 3) intron (NR_110917, intron 1 of 3) 170041 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 185-10 chr10 130843474 130843901 + 0.75 NA Intergenic Intergenic 118981 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 358-3 chr2 123946438 123947165 + 0.75 NA Intergenic L1MA1|LINE|L1 78373 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 284.25-10 chr8 122033548 122034146 + 0.75 NA Intergenic Intergenic -392407 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 286.25-9 chr6 62487449 62488122 + 0.75 NA Intergenic Intergenic -201558 NM_001350622 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 219.25-24 chr2 186599644 186600011 + 0.75 NA promoter-TSS (NM_001144999) promoter-TSS (NM_001144999) -378 NM_001144999 3685 Hs.436873 NM_002210 ENSG00000138448 ITGAV CD51|MSK8|VNRA|VTNR integrin subunit alpha V protein-coding 195.75-48 chr4 13884612 13885016 + 0.75 NA intron (NR_121681, intron 3 of 3) intron (NR_121681, intron 3 of 3) -227154 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 147.75-18 chr10 98894550 98894780 + 0.75 NA intron (NM_021828, intron 3 of 11) L1ME1|LINE|L1 29903 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 162-37 chr2 175315690 175315972 + 0.75 NA Intergenic Intergenic -134121 NM_001689 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 283-4 chr17 61404458 61404996 + 0.75 NA exon (NM_005994, exon 5 of 7) exon (NM_005994, exon 5 of 7) 4884 NM_005994 6909 Hs.531085 NM_005994 ENSG00000121068 TBX2 VETD T-box transcription factor 2 protein-coding 174.75-60 chr7 71366825 71367117 + 0.75 NA intron (NM_022479, intron 2 of 10) L1ME3G|LINE|L1 -59201 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 152.75-66 chr4 74173956 74174349 + 0.75 NA intron (NM_001351310, intron 3 of 8) MLT1A0|LTR|ERVL-MaLR 16034 NM_001351314 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 153.5-54 chr2 196788358 196788703 + 0.75 NA intron (NM_012086, intron 6 of 17) intron (NM_012086, intron 6 of 17) 11153 NM_012086 9330 Hs.470996 NM_012086 ENSG00000119041 GTF3C3 TFIIIC102|TFIIICgamma|TFiiiC2-102 general transcription factor IIIC subunit 3 protein-coding 182-6 chr10 19030473 19030813 + 0.75 NA Intergenic Intergenic -18158 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 330.5-9 chr6 49071429 49072287 + 0.75 NA Intergenic AluJb|SINE|Alu 391395 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 173.25-36 chr2 76589562 76589980 + 0.75 NA Intergenic Intergenic -396194 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 188.25-63 chr8 101221167 101221597 + 0.75 NA Intergenic A-rich|Low_complexity|Low_complexity -15318 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 255.25-21 chr5 55785134 55785892 + 0.75 NA intron (NM_024415, intron 12 of 21) intron (NM_024415, intron 12 of 21) 18628 NM_001166534 54514 Hs.223581 NM_019039 ENSG00000152670 DDX4 VASA DEAD-box helicase 4 protein-coding 247.5-7 chr10 31792849 31793349 + 0.75 NA Intergenic L1ME3|LINE|L1 115827 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 177.25-10 chr11 55712102 55712445 + 0.75 NA Intergenic Intergenic 47106 NM_001004704 219432 Hs.511921 NM_001004704 ENSG00000181903 OR4C6 OR11-138 olfactory receptor family 4 subfamily C member 6 protein-coding 206.5-32 chr4 65620285 65620743 + 0.75 NA intron (NM_001281767, intron 2 of 16) intron (NM_001281767, intron 2 of 16) 48974 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 242 chr1 203213663 203214128 + 0.75 NA Intergenic Intergenic 15778 NR_045785 1118 Hs.201688 NM_003465 ENSG00000133063 CHIT1 CHI3|CHIT|CHITD chitinase 1 protein-coding 146-82 chr7 10019574 10019952 + 0.75 NA Intergenic Intergenic 385493 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 221-37 chr8 135530184 135530585 + 0.75 NA intron (NM_006558, intron 2 of 8) L2c|LINE|L2 72928 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 155-72 chr4 63153318 63153591 + 0.75 NA Intergenic LTR12|LTR|ERV1 -991689 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 223-20 chr7 85046061 85046709 + 0.75 NA intron (NM_152754, intron 7 of 16) intron (NM_152754, intron 7 of 16) 75546 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 167.25-85 chr9 88342406 88342648 + 0.75 NA Intergenic Intergenic -45917 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 178.75-48 chr4 19212678 19212993 + 0.75 NA Intergenic Intergenic -1039070 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 192-20 chr15 98038158 98038651 + 0.75 NA Intergenic Intergenic 35366 NR_146565 105371008 NR_146563 LINC02251 - long intergenic non-protein coding RNA 2251 ncRNA 151.25-91 chr8 82490671 82490992 + 0.75 NA Intergenic L1MC4a|LINE|L1 -421273 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 206.5-16 chr14 66280444 66281026 + 0.75 NA Intergenic Intergenic -205636 NR_110307 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 155.25-21 chr12 76162763 76163041 + 0.75 NA Intergenic L1ME3A|LINE|L1 -78217 NM_001330231 4673 Hs.524599 NM_004537 ENSG00000187109 NAP1L1 NAP1|NAP1L|NRP nucleosome assembly protein 1 like 1 protein-coding 154.5-75 chr5 25944760 25945098 + 0.75 NA Intergenic Intergenic 753976 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 188.5-65 chr7 50369279 50369604 + 0.75 NA TTS (NM_001291845) TTS (NM_001291845) 50393 NM_001291844 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 166.25-35 chr2 144972117 144972405 + 0.75 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 304294 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 194.25-9 chr13 76027151 76027596 + 0.75 NA Intergenic L1MEi|LINE|L1 -92241 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 156.5-110 chr8 82739099 82739327 + 0.75 NA Intergenic Intergenic -172891 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 202.75-39 chr5 123689577 123690041 + 0.75 NA Intergenic L1MD1|LINE|L1 144392 NM_001270572 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 238 chr1 27910173 27910675 + 0.75 NA intron (NM_001355128, intron 1 of 7) intron (NM_001355128, intron 1 of 7) 4151 NM_002946 6118 Hs.79411 NM_002946 ENSG00000117748 RPA2 REPA2|RP-A p32|RP-A p34|RPA32 replication protein A2 protein-coding 200-14 chr12 12675314 12675759 + 0.75 NA intron (NM_006143, intron 3 of 3) MLT1E2|LTR|ERVL-MaLR 20647 NM_006143 2842 Hs.657862 NM_006143 ENSG00000183150 GPR19 - G protein-coupled receptor 19 protein-coding 183.5-76 chr8 135202536 135202816 + 0.75 NA Intergenic Intergenic -31455 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 186.75-51 chr22 31535268 31535688 + 0.75 NA intron (NM_001007467, intron 4 of 32) AluSg|SINE|Alu 38942 NM_001258326 9814 Hs.62209 NM_014775 ENSG00000198089 SFI1 PISD|PPP1R139|hSfi1p SFI1 centrin binding protein protein-coding 151.75-90 chr6 74846250 74846579 + 0.75 NA Intergenic L1MB7|LINE|L1 282368 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 200-36 chr4 81035007 81035294 + 0.75 NA intron (NM_001201, intron 1 of 2) UCON39|DNA|TcMar-Tigger 4442 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 204.25-27 chr3 53650324 53650650 + 0.75 NA intron (NM_001128840, intron 3 of 47) intron (NM_001128840, intron 3 of 47) 155876 NM_001128840 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 208-9 chr11 100500504 100500905 + 0.75 NA Intergenic Intergenic -186584 NM_152432 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 224.5-5 chr10 116541868 116542313 + 0.75 NA Intergenic Intergenic -3841 NM_000936 5406 Hs.501135 NM_000936 ENSG00000175535 PNLIP PL|PNLIPD|PTL pancreatic lipase protein-coding 191-3 chr1 150386759 150387094 + 0.75 NA intron (NM_015203, intron 1 of 10) Tigger2b_Pri|DNA|TcMar-Tigger 22815 NM_001297674 23248 Hs.213666 NM_015203 ENSG00000163125 RPRD2 HSPC099|KIAA0460 regulation of nuclear pre-mRNA domain containing 2 protein-coding 167.25-12 chr11 93144165 93144616 + 0.75 NA 3' UTR (NM_001286139, exon 11 of 11) 3' UTR (NM_001286139, exon 11 of 11) 53036 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 209.25-29 chr20 56201975 56202269 + 0.75 NA Intergenic MER84|LTR|ERV1 -46610 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 192.75-20 chr14 48619238 48619664 + 0.75 NA Intergenic MIR3|SINE|MIR -824437 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 162.25-32 chr2 129381712 129382100 + 0.75 NA Intergenic L1MD2|LINE|L1 -108015 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 195.5-39 chr3 46121750 46122040 + 0.75 NA Intergenic AluJo|SINE|Alu 86418 NM_001295 1230 Hs.301921 NM_001295 ENSG00000163823 CCR1 CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1 C-C motif chemokine receptor 1 protein-coding 169.75-69 chr7 40007462 40008014 + 0.75 NA intron (NM_003718, intron 5 of 13) L2c|LINE|L2 57378 NM_031267 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 170.5-73 chr8 18032302 18032660 + 0.75 NA Intergenic Intergenic 50715 NM_001363743 427 Hs.527412 NM_004315 ENSG00000104763 ASAH1 AC|ACDase|ASAH|PHP|PHP32|SMAPME N-acylsphingosine amidohydrolase 1 protein-coding 227.25-22 chr2 211246545 211246926 + 0.75 NA Intergenic L1PA8|LINE|L1 629164 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 174.25-18 chr14 66741666 66742136 + 0.75 NA intron (NM_001024218, intron 2 of 21) intron (NM_001024218, intron 2 of 21) 234494 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 168.75-19 chr12 1786378 1786901 + 0.75 NA 3' UTR (NM_024551, exon 8 of 8).2 3' UTR (NM_024551, exon 8 of 8).2 -33628 NM_001163925 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 311-4 chr17_KI270729v1_random 1110 1825 + 0.75 NA NA (TTCCA)n|Simple_repeat|Simple_repeat NA NA 225.25-33 chr6 53597553 53598047 + 0.75 NA Intergenic L1MEf|LINE|L1 -24525 NR_110840 101927136 Hs.509788 NR_110840 ENSG00000231683 LOC101927136 - uncharacterized LOC101927136 ncRNA 185-26 chr16 54154169 54154706 + 0.75 NA Intergenic Intergenic 115044 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 200.75-31 chr20 13553374 13553734 + 0.75 NA intron (NM_001323602, intron 4 of 9) intron (NM_001323602, intron 4 of 9) 85378 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 212.5-56 chr8 106094667 106095078 + 0.75 NA Intergenic Intergenic -34369 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 187.75-28 chr17 55659887 55660411 + 0.75 NA Intergenic Intergenic 62715 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 274.25-11 chr4 110676222 110676819 + 0.75 NA Intergenic Intergenic -34397 NM_153426 5308 Hs.643588 NM_000325 ENSG00000164093 PITX2 ARP1|ASGD4|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS paired like homeodomain 2 protein-coding 216.25-24 chr4 30458695 30459188 + 0.75 NA Intergenic Intergenic -261428 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 180.25-2 chr1 72730389 72730813 + 0.75 NA Intergenic L1MA4|LINE|L1 -448062 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 246.75-12 chr4 104241572 104242012 + 0.75 NA Intergenic Intergenic -249173 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 218.25-36 chr5 86211210 86211628 + 0.75 NA Intergenic Intergenic -71025 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 184.75-56 chr4 83981214 83981519 + 0.75 NA intron (NR_125909, intron 8 of 8) intron (NR_125909, intron 8 of 8) 317803 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 220.25-32 chr4 149679360 149679812 + 0.75 NA intron (NM_001363507, intron 7 of 13) L1MA4|LINE|L1 136257 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 222.25-44 chr8 80980809 80981251 + 0.75 NA intron (NM_018440, intron 7 of 8) L2a|LINE|L2 -106249 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 230.75-40 chr8 73408847 73409428 + 0.75 NA Intergenic Intergenic -10937 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 158.25-39 chr14 84191147 84191377 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR -1080670 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 189.75-78 chr8 111130653 111131009 + 0.75 NA intron (NR_125418, intron 1 of 3) intron (NR_125418, intron 1 of 3) -103398 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 230.5-39 chrX 101522543 101523091 + 0.75 NA intron (NR_045864, intron 11 of 12) L1M4|LINE|L1 -27730 NM_016608 51309 Hs.9728 NM_016608 ENSG00000126947 ARMCX1 ALEX1|GASP7 armadillo repeat containing X-linked 1 protein-coding 314.25 chr2 22752930 22753529 + 0.75 NA Intergenic MIRb|SINE|MIR 216750 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 205.25-14 chr15 92207288 92207577 + 0.75 NA Intergenic LTR12|LTR|ERV1 -186449 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 231.5-40 chr9 79538102 79538657 + 0.75 NA Intergenic Intergenic -33394 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 328-3 chr16 86261964 86262452 + 0.75 NA intron (NR_104139, intron 3 of 5) L1PA2|LINE|L1 24039 NR_104139 101154687 Hs.640512 NR_104139 LINC01081 TCONS00024764|TCONS_00024764 long intergenic non-protein coding RNA 1081 ncRNA 310.75-4 chr3 37296918 37297730 + 0.75 NA intron (NM_001172713, intron 8 of 22) intron (NM_001172713, intron 8 of 22) -53129 NR_149029 152048 Hs.596176 NM_152532 ENSG00000270194 LOC152048 - uncharacterized FLJ31715 ncRNA 284.5-7 chr2 194535365 194535931 + 0.75 NA Intergenic Intergenic 191379 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 195.75-21 chr14 61445143 61445635 + 0.75 NA intron (NM_006255, intron 3 of 13) intron (NM_006255, intron 3 of 13) 123946 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 184.25-64 chr9 27800844 27801281 + 0.75 NA Intergenic MER68B|LTR|ERVL -227196 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 162.75-15 chr11 47474198 47474517 + 0.75 NA intron (NM_198700, intron 11 of 13) L2a|LINE|L2 14667 NM_001172640 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP Elav-like family member 1 protein-coding 162.75-9 chr10 34207477 34207819 + 0.75 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -434968 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 175-39 chr5 81013835 81014192 + 0.75 NA intron (NM_006909, intron 1 of 26) L1ME3G|LINE|L1 -53106 NR_105015 102524628 Hs.737159 NR_105015 ENSG00000251450 RASGRF2-AS1 - RASGRF2 antisense RNA 1 ncRNA 164.5-33 chr2 78403026 78403319 + 0.75 NA Intergenic Intergenic -112441 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 203.5-46 chr3 142831299 142831651 + 0.75 NA intron (NM_013363, intron 5 of 8) MSTC|LTR|ERVL-MaLR 57608 NM_013363 26577 Hs.8944 NM_013363 ENSG00000163710 PCOLCE2 PCPE2 procollagen C-endopeptidase enhancer 2 protein-coding 182.5-83 chr8 140826029 140826388 + 0.75 NA intron (NR_148037, intron 9 of 34) intron (NR_148037, intron 9 of 34) -93555 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 163.5-25 chr14 53629102 53629355 + 0.75 NA Intergenic Intergenic 319256 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 281.25-16 chr8 134144396 134145129 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 258266 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 147.5-51 chr2 227863998 227864287 + 0.75 NA Intergenic MamGypLTR2b|LTR|Gypsy -7234 NR_138459 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 196.5-2 chr1 107905254 107905750 + 0.75 NA intron (NM_006113, intron 1 of 26) intron (NM_006113, intron 1 of 26) 8279 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 172-80 chr7 53669669 53670178 + 0.75 NA intron (NR_038371, intron 5 of 5) L1MB4|LINE|L1 142008 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 216-5 chr1 160334518 160334885 + 0.75 NA intron (NM_001098398, intron 4 of 32) intron (NM_001098398, intron 4 of 32) 8549 NM_004371 1314 Hs.162121 NM_004371 ENSG00000122218 COPA AILJK|HEP-COP|alpha-COP coatomer protein complex subunit alpha protein-coding 194.5-23 chr14 75052864 75053176 + 0.75 NA TTS (NM_001107) TTS (NM_001107) -1488 NM_001040108 27030 Hs.436650 NM_014381 ENSG00000119684 MLH3 HNPCC7 mutL homolog 3 protein-coding 187-32 chr3 76736726 76737107 + 0.75 NA Intergenic Intergenic -303183 NM_002942 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 191.75-36 chr2 157162167 157162527 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR -95358 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 180-24 chr14 71315893 71316153 + 0.75 NA Intergenic L2-3_Crp|LINE|L2 -4453 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 167.25-73 chr7 106216076 106216380 + 0.75 NA Intergenic Intergenic 68755 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 277-12 chr7 49223648 49224372 + 0.75 NA Intergenic Intergenic 299463 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 176.75-45 chr21 29202851 29203272 + 0.75 NA intron (NR_027072, intron 1 of 1) L1M4|LINE|L1 9567 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 188-26 chr17 40078236 40078562 + 0.75 NA intron (NM_001190919, intron 4 of 9) AluJb|SINE|Alu 15434 NM_003250 7067 Hs.724 NM_003250 ENSG00000126351 THRA AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|c-ERBA-1 thyroid hormone receptor alpha protein-coding 187.5-66 chr7 144882325 144882643 + 0.75 NA Intergenic HAL1|LINE|L1 -46431 NM_022445 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 219.75 chr1 78710741 78711137 + 0.75 NA Intergenic L1MA9|LINE|L1 61108 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 284.75-18 chr8 103688102 103688827 + 0.75 NA intron (NM_001348488, intron 3 of 25) L1MA8|LINE|L1 -130756 NM_001348503 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 146.75-124 chr9 29830349 29830669 + 0.75 NA Intergenic Intergenic 577945 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 147-107 chr8 57935091 57935435 + 0.75 NA Intergenic Intergenic -43095 NR_130934 100505477 Hs.434693 NR_130934 ENSG00000205293 LINC01602 T1560 long intergenic non-protein coding RNA 1602 ncRNA 178.75-73 chr9 106463846 106464320 + 0.75 NA Intergenic Tigger2a|DNA|TcMar-Tigger -136845 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 302.25-13 chr8 82427908 82428584 + 0.75 NA Intergenic Intergenic -483858 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 190.25-2 chr1 171486985 171487540 + 0.75 NA intron (NM_015172, intron 1 of 33) MIR|SINE|MIR 1732 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 205.75-20 chr12 62359364 62359644 + 0.75 NA intron (NR_147080, intron 6 of 19) MIR|SINE|MIR 99100 NM_001351165 9958 Hs.434951 NM_006313 ENSG00000135655 USP15 UNPH-2|UNPH4 ubiquitin specific peptidase 15 protein-coding 252-8 chr4 44258206 44258709 + 0.75 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 190352 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 182-3 chr1 225863460 225863807 + 0.75 NA intron (NM_014698, intron 10 of 24) intron (NM_014698, intron 10 of 24) 18747 NM_014698 9725 Hs.119387 NM_014698 ENSG00000196187 TMEM63A KIAA0792 transmembrane protein 63A protein-coding 160-59 chr4 45847224 45847588 + 0.75 NA Intergenic Intergenic 276648 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 169-80 chrX 95292070 95292423 + 0.75 NA Intergenic L1M1|LINE|L1 -229020 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 196.5-13 chr12 89615318 89615763 + 0.75 NA intron (NM_001001323, intron 12 of 21) L2b|LINE|L2 -89278 NM_001199782 100528030 Hs.25130 NM_001199781 ENSG00000259075 POC1B-GALNT4 GALNT4|GalNAc-T4 POC1B-GALNT4 readthrough protein-coding 158.5-48 chr2 140445971 140446257 + 0.75 NA intron (NM_018557, intron 63 of 90) intron (NM_018557, intron 63 of 90) 140571 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 223-22 chr8 122157149 122157550 + 0.75 NA Intergenic Intergenic 411295 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 314.75-6 chr4 111907574 111908275 + 0.75 NA Intergenic Intergenic -237530 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 179-14 chr14 59882855 59883315 + 0.75 NA Intergenic Intergenic -12309 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 232.25-6 chr1 194874465 194874930 + 0.75 NA Intergenic Intergenic 1214018 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 238.75-23 chr4 55437218 55437741 + 0.75 NA intron (NM_004898, intron 22 of 22) LTR86C|LTR|ERVL 41522 NR_073070 55858 Hs.479766 NM_018475 ENSG00000134851 TMEM165 CDG2K|FT27|GDT1|TMPT27|TPARL transmembrane protein 165 protein-coding 190.25-24 chr20 40927023 40927392 + 0.75 NA Intergenic L1ME4b|LINE|L1 -53506 NR_145524 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 168.5-23 chr13 69746315 69746650 + 0.75 NA intron (NM_001286725, intron 6 of 9) intron (NM_001286725, intron 6 of 9) -360731 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 252.25-4 chr12 100812480 100812896 + 0.75 NA intron (NM_001286615, intron 1 of 27) L4_A_Mam|LINE|RTE-X 17912 NM_001286615 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 211.25-16 chr16 84461435 84461718 + 0.75 NA intron (NR_146503, intron 2 of 2) intron (NR_146503, intron 2 of 2) 5785 NR_146503 105371374 Hs.610979 NR_146503 ENSG00000261286 ATP2C2-AS1 - ATP2C2 antisense RNA 1 ncRNA 199.25-59 chr6 130383133 130383482 + 0.75 NA intron (NM_001258276, intron 1 of 1) intron (NM_001258276, intron 1 of 1) 17026 NM_001258277 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 214.5-52 chr9 81084604 81084998 + 0.75 NA Intergenic Intergenic 604734 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 219.75-33 chr6 116730981 116731402 + 0.75 NA intron (NM_001366308, intron 13 of 13) intron (NM_001366308, intron 13 of 13) 34528 NM_001085480 221303 Hs.126712 NM_001085480 ENSG00000183807 FAM162B C6orf189|bA86F4.2 family with sequence similarity 162 member B protein-coding 217.75-19 chr2 103476158 103476494 + 0.75 NA Intergenic PABL_A-int|LTR|ERV1 -491897 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 191.5-28 chr18 1447226 1447710 + 0.75 NA Intergenic L1ME1|LINE|L1 -87839 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 205.5-24 chr20 17221612 17221903 + 0.75 NA Intergenic Intergenic -4350 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 147-68 chr3 112902698 112902974 + 0.75 NA Intergenic Intergenic -56886 NM_001199215 344807 Hs.531814 NM_001008784 ENSG00000206531 CD200R1L CD200R2|CD200RLa CD200 receptor 1 like protein-coding 151.25-46 chr2 148277172 148277502 + 0.75 NA intron (NM_018328, intron 4 of 14) intron (NM_018328, intron 4 of 14) -255733 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 149.75-50 chr21 15474729 15475165 + 0.75 NA Intergenic MIR|SINE|MIR -254987 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 177-46 chr4 63431365 63431867 + 0.75 NA Intergenic L2a|LINE|L2 977834 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 250.75-14 chr2 21469638 21470087 + 0.75 NA Intergenic Intergenic 240790 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 267.75-19 chr9 86376581 86377122 + 0.75 NA Intergenic AluSx1|SINE|Alu -22441 NM_024617 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 210-42 chr4 161941039 161941383 + 0.75 NA intron (NM_001128428, intron 3 of 14) L1M4|LINE|L1 -81522 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 187.75-25 chr15 95955023 95955405 + 0.75 NA Intergenic Intergenic 172627 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 205.25-24 chr22 41419931 41420353 + 0.75 NA Intergenic AluSq2|SINE|Alu 26659 NM_016272 10766 Hs.474978 NM_016272 ENSG00000183864 TOB2 APRO5|TOB4|TOBL|TROB2 transducer of ERBB2, 2 protein-coding 259.5-10 chr4 47856096 47856513 + 0.75 NA intron (NR_103795, intron 20 of 23) intron (NR_103795, intron 20 of 23) -18198 NM_001278585 10699 Hs.518618 NM_006587 ENSG00000145244 CORIN ATC2|CRN|Lrp4|PEE5|TMPRSS10 corin, serine peptidase protein-coding 214.5-45 chr6 139979379 139979747 + 0.75 NA intron (NR_121624, intron 1 of 2) intron (NR_121624, intron 1 of 2) 3244 NR_121623 100507477 Hs.179213 NR_121622 ENSG00000236013 LOC100507477 - uncharacterized LOC100507477 ncRNA 150-51 chr21 31380526 31380789 + 0.75 NA intron (NM_001353690, intron 1 of 27) L1MB8|LINE|L1 -36303 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 174.5-54 chr3 177810449 177810735 + 0.75 NA Intergenic Intergenic -6273 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 183.25-44 chr3 140396955 140397279 + 0.75 NA intron (NM_022131, intron 2 of 16) Charlie1a|DNA|hAT-Charlie 111672 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 151.5-99 chr8 75850729 75851123 + 0.75 NA Intergenic Intergenic 310958 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 157-73 chr5 54406778 54407075 + 0.75 NA intron (NR_126379, intron 3 of 4) Tigger9a|DNA|TcMar-Tigger -48773 NM_006308 8988 Hs.41707 NM_006308 ENSG00000169271 HSPB3 DHMN2C|HMN2C|HSPL27 heat shock protein family B (small) member 3 protein-coding 207-9 chr12 33037086 33037473 + 0.75 NA Intergenic Intergenic -140433 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 267.5-12 chr4 31219836 31220482 + 0.75 NA Intergenic Intergenic 49015 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 190-39 chr3 162252285 162252760 + 0.75 NA Intergenic Intergenic 755714 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 171-13 chr11 73824669 73825066 + 0.75 NA intron (NM_001318498, intron 4 of 8) intron (NM_001318498, intron 4 of 8) 36993 NM_001318500 51642 Hs.503239 NM_016055 ENSG00000175581 MRPL48 CGI-118|HSPC290|L48MT|MRP-L48 mitochondrial ribosomal protein L48 protein-coding 177.75-39 chr21 27764247 27764682 + 0.75 NA Intergenic L1MB2|LINE|L1 42085 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 171.5-63 chr3 107600254 107600613 + 0.75 NA intron (NM_001276286, intron 2 of 16) intron (NM_001276286, intron 2 of 16) 77471 NM_020235 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 215-21 chr3 82993271 82993865 + 0.75 NA Intergenic L1MA3|LINE|L1 1007426 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 168-9 chr1 222696180 222696595 + 0.75 NA intron (NM_022831, intron 2 of 9) MIR|SINE|MIR 16104 NM_022831 64853 Hs.156625 NM_022831 ENSG00000186063 AIDA C1orf80 axin interactor, dorsalization associated protein-coding 147.75-108 chr8 55610454 55610898 + 0.75 NA Intergenic AluJr|SINE|Alu -89698 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 145.75-115 chr7 46709753 46710018 + 0.75 NA Intergenic Intergenic -12763 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 335.5 chr14 52020038 52020745 + 0.75 NA intron (NM_007361, intron 12 of 21) intron (NM_007361, intron 12 of 21) 30845 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 198.75-16 chr13 62020142 62020595 + 0.75 NA intron (NR_046995, intron 1 of 1) intron (NR_046995, intron 1 of 1) 9180 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 249.5-16 chr2 221041365 221041775 + 0.75 NA Intergenic AluJr|SINE|Alu 530734 NM_004438 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 221.75-8 chr12 2281355 2281750 + 0.75 NA intron (NR_046769, intron 1 of 2) L1ME1|LINE|L1 11776 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 199.75-6 chr1 241692048 241692722 + 0.75 NA intron (NM_001367482, intron 8 of 27) L1MC1|LINE|L1 40104 NM_001367482 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 220.75-31 chr5 23663470 23664038 + 0.75 NA Intergenic Intergenic 156099 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 192-6 chr1 203806816 203807161 + 0.75 NA intron (NM_014827, intron 4 of 19) L1M5|LINE|L1 9465 NM_001174108 100381270 NM_001174108 ENSG00000257315 ZBED6 MGR zinc finger BED-type containing 6 protein-coding 202.25-6 chr10 126096322 126096664 + 0.75 NA intron (NM_001288974, intron 10 of 18) intron (NM_001288974, intron 10 of 18) -123220 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 166.75-76 chr6 63370865 63371235 + 0.75 NA Intergenic Intergenic -51067 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 184.75-7 chr1 175074534 175074880 + 0.75 NA intron (NM_022093, intron 1 of 18) intron (NM_022093, intron 1 of 18) 6874 NM_022093 63923 Hs.156369 NM_022093 ENSG00000120332 TNN TN-W tenascin N protein-coding 230.75-25 chr20 40727107 40727602 + 0.75 NA Intergenic Intergenic -12731 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 337.5-7 chr4 11458091 11458729 + 0.75 NA Intergenic Intergenic -29516 NM_005114 9957 Hs.507348 NM_005114 ENSG00000002587 HS3ST1 3OST|3OST1 heparan sulfate-glucosamine 3-sulfotransferase 1 protein-coding 190.75-63 chr7 50076039 50076395 + 0.75 NA intron (NM_007009, intron 3 of 7) L1MA1|LINE|L1 17029 NM_001159878 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 235.75-15 chr16 72044787 72045309 + 0.75 NA Intergenic Intergenic -9457 NM_001318138 3240 Hs.513711 NM_005143 ENSG00000257017 HP BP|HP2ALPHA2|HPA1S haptoglobin protein-coding 270.25-9 chr18 4760414 4760995 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -305397 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 226.5-11 chr16 64192759 64193232 + 0.75 NA Intergenic Intergenic 929068 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 168.5-99 chr8 123430509 123430816 + 0.75 NA intron (NM_018024, intron 3 of 5) AluSz6|SINE|Alu 13888 NM_018024 55093 Hs.18029 NM_018024 ENSG00000156795 WDYHV1 C8orf32 WDYHV motif containing 1 protein-coding 195.25-28 chr2 163380437 163380837 + 0.75 NA Intergenic Intergenic 355371 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 194.75-23 chr2 138014503 138014857 + 0.75 NA 3' UTR (NM_006895, exon 6 of 6) 3' UTR (NM_006895, exon 6 of 6) 50207 NM_006895 3176 Hs.42151 NM_006895 ENSG00000150540 HNMT HMT|HNMT-S1|HNMT-S2|MRT51 histamine N-methyltransferase protein-coding 247.25-8 chr15 87363658 87364192 + 0.75 NA Intergenic Intergenic -213004 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 148.75-38 chr18 2650836 2651076 + 0.75 NA Intergenic Intergenic 4439 NR_033754 645158 Hs.712861 NR_033754 ENSG00000266405 CBX3P2 - chromobox 3 pseudogene 2 pseudo 172.75-7 chr10 44191742 44192220 + 0.75 NA Intergenic L1MC1|LINE|L1 -100769 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 154.25-17 chr10 124040934 124041178 + 0.75 NA intron (NM_014863, intron 4 of 5) intron (NM_014863, intron 4 of 5) 51350 NM_014863 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 289.25-8 chr3 33538770 33539319 + 0.75 NA intron (NM_001365634, intron 29 of 35) intron (NM_001365634, intron 29 of 35) -98639 NM_014517 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 154.5-35 chr15 85474260 85474630 + 0.75 NA intron (NM_007200, intron 1 of 36) intron (NM_007200, intron 1 of 36) 93842 NM_007200 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 225.5-9 chr11 76034593 76035327 + 0.75 NA intron (NM_003369, intron 12 of 14) intron (NM_003369, intron 12 of 14) 171542 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 232.5-7 chr10 77216287 77216786 + 0.75 NA intron (NM_001271519, intron 3 of 28) MER104|DNA|TcMar-Tc2 75705 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 219.75-17 chr16 72290714 72291162 + 0.75 NA intron (NR_126330, intron 10 of 13) intron (NR_126330, intron 10 of 13) -118488 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 205.25-37 chr7 42910129 42910558 + 0.75 NA exon (NM_001363436, exon 2 of 2) exon (NM_001363436, exon 2 of 2) 1500 NM_001363436 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 168.5-69 chr3 175857281 175857742 + 0.75 NA Intergenic L1MA4|LINE|L1 -81178 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 202.75-49 chr8 130235769 130236240 + 0.75 NA intron (NM_001362925, intron 4 of 29) MIRb|SINE|MIR 60529 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 396 chr11 40733556 40734684 + 0.75 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -440990 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 209-7 chr10 48574582 48575100 + 0.75 NA 3' UTR (NM_001347737, exon 3 of 3) 3' UTR (NM_001347737, exon 3 of 3) 30232 NR_144645 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 224.75-9 chr12 15201517 15201856 + 0.75 NA intron (NM_032918, intron 2 of 4) intron (NM_032918, intron 2 of 4) 19731 NM_032918 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 199.5-47 chr6 154228055 154228376 + 0.75 NA intron (NM_015553, intron 5 of 11) FLAM_C|SINE|Alu 101866 NM_001130699 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 150.5-99 chr5 160531483 160531765 + 0.75 NA Intergenic ORSL-2b|DNA|hAT-Tip100 46272 NR_029701 406938 NR_029701 ENSG00000283733 MIR146A MIRN146|MIRN146A|miR-146a|miRNA146A microRNA 146a ncRNA 244-26 chr8 123797322 123797786 + 0.75 NA intron (NM_144963, intron 15 of 23) Tigger2|DNA|TcMar-Tigger 29115 NM_001317917 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 278.25-11 chr4 66233510 66234150 + 0.75 NA Intergenic L1MC4a|LINE|L1 -42994 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 212.75-26 chr4 116343273 116343583 + 0.75 NA Intergenic L1M5|LINE|L1 43703 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 269.75-10 chr4 115024158 115024612 + 0.75 NA intron (NM_022569, intron 2 of 13) MSTD-int|LTR|ERVL-MaLR 89235 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 194-51 chr6 108398665 108398992 + 0.75 NA intron (NR_136553, intron 3 of 8) L1MA2|LINE|L1 103774 NM_145315 246269 Hs.259666 NM_145315 ENSG00000135537 AFG1L AFG1|LACE1|c222389 AFG1 like ATPase protein-coding 177-67 chr8 73398326 73398815 + 0.75 NA Intergenic AluSz|SINE|Alu -21504 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 204.25-22 chr19 44437745 44438293 + 0.75 NA intron (NM_001278510, intron 4 of 5) L1PREC2|LINE|L1 10453 NR_103551 7772 Hs.709348 NM_014518 ENSG00000278318 ZNF229 - zinc finger protein 229 protein-coding 167.5-87 chr7 42455119 42455508 + 0.75 NA Intergenic Intergenic -218104 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 270.75-26 chr7 71402156 71402630 + 0.75 NA intron (NM_022479, intron 3 of 10) intron (NM_022479, intron 3 of 10) -94623 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 166-56 chr5 36435228 36435585 + 0.75 NA Intergenic MIR|SINE|MIR -133504 NM_001323280 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 181.75-3 chr1 49416287 49416532 + 0.75 NA intron (NR_046839, intron 3 of 3) MIRc|SINE|MIR 55676 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 195.25-58 chr8 104586474 104586978 + 0.75 NA intron (NM_013437, intron 1 of 6) intron (NM_013437, intron 1 of 6) 2298 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 171.75-10 chr10 44590534 44590820 + 0.75 NA Intergenic Intergenic -205580 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 183.25-48 chr4 40118639 40119063 + 0.75 NA intron (NM_001318359, intron 9 of 18) intron (NM_001318359, intron 9 of 18) -61652 NR_027277 344967 Hs.534633 NR_027277 ENSG00000205794 LOC344967 - acyl-CoA thioesterase 7 pseudogene pseudo 151-77 chr5 159001569 159001880 + 0.75 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 96232 NM_001364159 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 222.5-55 chr8 142101467 142101878 + 0.75 NA Intergenic Intergenic -74667 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 181.5-39 chr2 155279317 155279637 + 0.75 NA Intergenic L1MA3|LINE|L1 580782 NM_002239 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 254.5-18 chr2 103255483 103256001 + 0.75 NA Intergenic MIRc|SINE|MIR -271313 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 209-34 chr4 55793988 55794370 + 0.75 NA Intergenic Intergenic -25824 NM_001351575 644145 Hs.570825 NM_001351574 ENSG00000250821 EXOC1L - exocyst complex component 1 like protein-coding 166.25-47 chr4 66786244 66786622 + 0.75 NA Intergenic Intergenic 509609 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 175-5 chr1 238768888 238769240 + 0.75 NA Intergenic MLT1L|LTR|ERVL-MaLR -283047 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 186.25-31 chr21 41318422 41318858 + 0.75 NA intron (NM_206964, intron 1 of 6) intron (NM_206964, intron 1 of 6) 1839 NM_058186 54097 Hs.473877 NM_058186 ENSG00000183844 FAM3B 2-21|C21orf11|C21orf76|ORF9|PANDER|PRED44 family with sequence similarity 3 member B protein-coding 266.75-4 chr11 97389458 97389997 + 0.75 NA Intergenic L1MB4|LINE|L1 881302 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 211.25-8 chr12 34592076 34592537 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 569810 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 211.75-44 chr8 126921779 126922254 + 0.75 NA Intergenic L1MC2|LINE|L1 -91138 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 222.25-12 chr14 63632965 63633386 + 0.75 NA intron (NM_080666, intron 1 of 2) intron (NM_080666, intron 1 of 2) 8696 NM_001008726 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 155.5-23 chr12 60188027 60188266 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR 498776 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 160.5-26 chr13 59491024 59491473 + 0.75 NA Intergenic MER2|DNA|TcMar-Tigger -521470 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 231-4 chr11 43896326 43896824 + 0.75 NA promoter-TSS (NR_026952) promoter-TSS (NR_026952) -728 NR_026952 729799 Hs.368920 NR_026952 ENSG00000213693 SEC14L1P1 - SEC14 like 1 pseudogene 1 pseudo 223.5-22 chr2 32344155 32344570 + 0.75 NA Intergenic AluJo|SINE|Alu -12666 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 159.25-70 chr7 38840255 38840651 + 0.75 NA intron (NM_014396, intron 4 of 28) intron (NM_014396, intron 4 of 28) 68738 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 239.25 chr1 77045068 77045487 + 0.75 NA intron (NM_030965, intron 3 of 4) MER112|DNA|hAT-Charlie -14866 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 157-11 chr10 43163309 43163613 + 0.75 NA intron (NR_135077, intron 5 of 8) L2a|LINE|L2 8564 NM_001319654 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 157.75-38 chr14 74514079 74514438 + 0.75 NA intron (NM_000428, intron 18 of 35) L2c|LINE|L2 20493 NM_194279 122961 Hs.291079 NM_194279 ENSG00000165898 ISCA2 HBLD1|ISA2|MMDS4|c14_5557 iron-sulfur cluster assembly 2 protein-coding 189.25-39 chr4 183646872 183647243 + 0.75 NA intron (NM_152682, intron 5 of 6) intron (NM_152682, intron 5 of 6) 12128 NM_152682 201965 Hs.133337 NM_152682 ENSG00000182552 RWDD4 FAM28A|RWDD4A RWD domain containing 4 protein-coding 177.5-64 chrX 110276627 110277186 + 0.75 NA intron (NM_001171689, intron 3 of 7) L1MEc|LINE|L1 41179 NM_001025580 9949 Hs.656243 NM_015365 ENSG00000101935 AMMECR1 AMMERC1|MFHIEN Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 protein-coding 154.75-17 chr12 17233455 17233705 + 0.75 NA Intergenic Intergenic 244833 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 153-8 chr10 54946999 54947287 + 0.75 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -145852 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 272-16 chr8 130830604 130830983 + 0.75 NA intron (NM_001115, intron 12 of 17) intron (NM_001115, intron 12 of 17) 210116 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 205-11 chr13 62189214 62189779 + 0.75 NA Intergenic L1MA6|LINE|L1 -22786 NR_125787 103752583 Hs.578048 NR_125787 LINC01075 - long intergenic non-protein coding RNA 1075 ncRNA 159.5-61 chr4 37693152 37693493 + 0.75 NA Intergenic MSTD|LTR|ERVL-MaLR -6946 NM_001085400 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 146.5-92 chr6 39406585 39406818 + 0.75 NA intron (NM_001289024, intron 2 of 9) L1ME1|LINE|L1 24689 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 250.25-15 chr2 168792274 168792987 + 0.75 NA intron (NM_001171631, intron 2 of 20) AluSx1|SINE|Alu 6091 NM_001171631 115677 Hs.189780 NM_052946 ENSG00000163072 NOSTRIN DaIP2 nitric oxide synthase trafficking protein-coding 232-11 chr14 46261966 46262641 + 0.75 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) 198144 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 163.75-3 chr1 102775384 102775800 + 0.75 NA Intergenic Intergenic 332904 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 182.5-63 chr5 160617898 160618351 + 0.75 NA intron (NM_001366652, intron 14 of 24) intron (NM_001366652, intron 14 of 24) 67267 NM_001366658 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 182.75-13 chr11 35738972 35739438 + 0.75 NA intron (NM_017583, intron 4 of 4) MIR|SINE|MIR 76430 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 183.5-57 chr4 130896186 130896587 + 0.75 NA Intergenic Intergenic 520025 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 175.5-43 chr18 73696882 73697436 + 0.75 NA Intergenic Intergenic 372218 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 284-4 chr2 149191034 149191657 + 0.75 NA intron (NM_001317002, intron 4 of 7) intron (NM_001317002, intron 4 of 7) 73171 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 222.75-36 chr8 107486728 107487230 + 0.75 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) 10939 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 388-3 chr22 35262645 35263421 + 0.75 NA intron (NM_001003681, intron 2 of 10) intron (NM_001003681, intron 2 of 10) 5540 NM_001003681 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 152.25-52 chr2 213753481 213753803 + 0.75 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -4425 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 221.5-31 chr20 31754657 31755219 + 0.75 NA intron (NM_012112, intron 2 of 17) intron (NM_012112, intron 2 of 17) 15648 NM_012112 22974 Hs.244580 NM_012112 ENSG00000088325 TPX2 C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100 TPX2 microtubule nucleation factor protein-coding 148.75-99 chr8 89245644 89245891 + 0.75 NA Intergenic L1MA5|LINE|L1 511944 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 168-11 chr10 43562252 43562645 + 0.75 NA intron (NM_001099283, intron 1 of 1) intron (NM_001099283, intron 1 of 1) 6011 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 229-4 chr1 216416148 216416582 + 0.75 NA intron (NM_206933, intron 3 of 71) intron (NM_206933, intron 3 of 71) 7031 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 301-2 chr14 64373771 64374393 + 0.75 NA Intergenic AluSz|SINE|Alu -14271 NM_005956 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 CIMAH|MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 147.75-77 chr4 58452211 58452560 + 0.75 NA Intergenic Intergenic 83943 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 205.5-34 chr4 171790938 171791405 + 0.75 NA Intergenic L2a|LINE|L2 -22233 NM_001034845 442117 Hs.386236 NM_001034845 ENSG00000174473 GALNTL6 GALNACT20|GALNT17|GalNAc-T6L polypeptide N-acetylgalactosaminyltransferase like 6 protein-coding 150-12 chr10 85054090 85054435 + 0.75 NA Intergenic Intergenic 144643 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 176.75-51 chr3 12799422 12799773 + 0.75 NA intron (NM_001162499, intron 1 of 14) intron (NM_001162499, intron 1 of 14) 2917 NM_012298 23066 Hs.343664 NM_012298 ENSG00000144712 CAND2 TIP120B|Tp120b cullin associated and neddylation dissociated 2 (putative) protein-coding 154.25-64 chr5 3732621 3732959 + 0.75 NA Intergenic Intergenic 136958 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 222-2 chr1 175906344 175906747 + 0.75 NA Intergenic MER57B2|LTR|ERV1 29202 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 183.25-60 chr5 17958432 17958788 + 0.75 NA Intergenic L1MCb|LINE|L1 151336 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 159.25-63 chr5 27306758 27307048 + 0.75 NA Intergenic Intergenic -165389 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 343.25-2 chr2 60222634 60223419 + 0.75 NA Intergenic MIR|SINE|MIR 160010 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 211-23 chr21 27312186 27312507 + 0.75 NA Intergenic L1PB4|LINE|L1 -345258 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 179.75-42 chr4 67710873 67711358 + 0.75 NA intron (NR_015439, intron 1 of 1) intron (NR_015439, intron 1 of 1) 9837 NR_015439 550112 Hs.479879 NR_015439 ENSG00000248049 UBA6-AS1 - UBA6 antisense RNA 1 (head to head) ncRNA 209.5-23 chr2 20553622 20554124 + 0.75 NA Intergenic LTR40b|LTR|ERVL 38675 NR_046836 100874343 Hs.591546 NR_046836 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 ncRNA 215.25-51 chr9 86703576 86704139 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger 243649 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 153-2 chr1 193852390 193852829 + 0.75 NA Intergenic L1ME4b|LINE|L1 547864 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 198.25-7 chr11 96515455 96515855 + 0.75 NA TTS (NR_135097) TTS (NR_135097) 7230 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 219.25-54 chr9 110304446 110304891 + 0.75 NA intron (NM_001286946, intron 3 of 4) intron (NM_001286946, intron 3 of 4) 33195 NM_001003936 255220 Hs.147064 NM_001003936 ENSG00000204193 TXNDC8 SPTRX-3|SPTRX3|TRX6|bA427L11.2 thioredoxin domain containing 8 protein-coding 159.5-50 chr22 34534038 34534339 + 0.75 NA Intergenic Intergenic 463728 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 185-61 chr5 151872067 151872469 + 0.75 NA intron (NM_000171, intron 3 of 8) intron (NM_000171, intron 3 of 8) 52583 NM_001292000 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 207.25-33 chr20 7866434 7867048 + 0.75 NA Intergenic Intergenic 73717 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 236.75-18 chr3 97096816 97097196 + 0.75 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 282412 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 202-22 chr2 109151357 109151745 + 0.75 NA intron (NM_001099289, intron 1 of 9) MER33|DNA|hAT-Charlie -9963 NR_036223 100422863 NR_036223 ENSG00000264934 MIR4265 - microRNA 4265 ncRNA 146.75-128 chrX 76836368 76836676 + 0.75 NA intron (NR_110405, intron 1 of 2) L1PA16|LINE|L1 82838 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 154.25-52 chr3 21668732 21669129 + 0.75 NA intron (NM_024697, intron 1 of 7) intron (NM_024697, intron 1 of 7) 82280 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 163.25-50 chr3 175102957 175103274 + 0.75 NA intron (NM_207015, intron 2 of 13) AluSc|SINE|Alu 12127 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 200.75-17 chr15 34090768 34091181 + 0.75 NA intron (NM_020154, intron 2 of 4) intron (NM_020154, intron 2 of 4) 10888 NM_020154 56851 Hs.160565 NM_020154 ENSG00000134153 EMC7 C11orf3|C15orf24|HT022|ORF1-FL1 ER membrane protein complex subunit 7 protein-coding 324-5 chr5 147210051 147210646 + 0.75 NA intron (NR_147191, intron 2 of 2) intron (NR_147191, intron 2 of 2) 24511 NR_147190 105378217 Hs.162649 NR_147190 STK32A-AS1 - STK32A antisense RNA 1 ncRNA 240.25-6 chr11 29206018 29206494 + 0.75 NA Intergenic Intergenic -388157 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 175.5-31 chr15 70306162 70306629 + 0.75 NA Intergenic L1MD1|LINE|L1 199533 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 163.5-67 chr21 31309842 31310120 + 0.75 NA intron (NM_001353686, intron 2 of 27) intron (NM_001353686, intron 2 of 27) 34373 NM_001353686 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 265.25-9 chr2 44509436 44509848 + 0.75 NA intron (NM_024766, intron 3 of 10) MSTB2|LTR|ERVL-MaLR 147695 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 216.25-21 chr3 13559272 13559766 + 0.75 NA intron (NM_001004019, intron 1 of 17) MLT1K|LTR|ERVL-MaLR -9221 NM_001165035 2199 Hs.198862 NM_001998 ENSG00000163520 FBLN2 - fibulin 2 protein-coding 263.75-8 chr18 5861377 5861798 + 0.75 NA Intergenic L1ME3F|LINE|L1 20892 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 245.25-13 chr20 49192570 49193044 + 0.75 NA intron (NM_001319135, intron 1 of 14) intron (NM_001319135, intron 1 of 14) -4437 NM_001322929 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 191.25-47 chr3 65674527 65675065 + 0.75 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -219020 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 185.75-93 chrX 86355156 86355569 + 0.75 NA intron (NM_001139515, intron 1 of 11) L1PA15|LINE|L1 92394 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 194-49 chr6 53666136 53666472 + 0.75 NA promoter-TSS (NM_001003760) promoter-TSS (NM_001003760) -548 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 247-17 chr4 117888873 117889362 + 0.75 NA Intergenic Intergenic 54716 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 162.25-28 chr18 52172037 52172387 + 0.75 NA Intergenic L1M5|LINE|L1 -167985 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 210.25-19 chr2 83861368 83861848 + 0.75 NA Intergenic Intergenic 338794 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 188-18 chr11 110754696 110755010 + 0.75 NA Intergenic L1M5|LINE|L1 -41664 NM_001258418 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 203.75-45 chr8 29241557 29242164 + 0.75 NA intron (NM_015254, intron 2 of 39) intron (NM_015254, intron 2 of 39) 21210 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 269.5-9 chr16 75055897 75056512 + 0.75 NA intron (NM_032268, intron 1 of 4) intron (NM_032268, intron 1 of 4) 57180 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 179.75-55 chr6 155984200 155984450 + 0.75 NA Intergenic Intergenic 37528 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 197-26 chr21 30309786 30310396 + 0.75 NA Intergenic Intergenic 10224 NM_203405 388818 Hs.28704 NM_203405 ENSG00000197683 KRTAP26-1 - keratin associated protein 26-1 protein-coding 172-8 chr1 196201918 196202274 + 0.75 NA Intergenic MER110-int|LTR|ERV1 -113381 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 178.25 chr1 63041830 63042175 + 0.75 NA Intergenic Intergenic -29531 NR_146606 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 205.5-32 chr4 32388972 32389349 + 0.75 NA Intergenic L1MD|LINE|L1 38122 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 239-12 chr3 87245704 87246262 + 0.75 NA intron (NM_014043, intron 3 of 5) intron (NM_014043, intron 3 of 5) 18674 NM_014043 25978 Hs.476930 NM_014043 ENSG00000083937 CHMP2B ALS17|CHMP2.5|DMT1|VPS2-2|VPS2B charged multivesicular body protein 2B protein-coding 191.75-34 chr2 128201140 128201603 + 0.75 NA Intergenic Intergenic 110171 NR_027671 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 238-17 chr5 102648984 102649584 + 0.75 NA intron (NR_103753, intron 1 of 2) intron (NR_103753, intron 1 of 2) 22180 NR_103755 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 207.25-21 chr14 64254802 64255296 + 0.75 NA intron (NR_073496, intron 5 of 7) intron (NR_073496, intron 5 of 7) 28026 NM_001271877 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 164-23 chr16 13407666 13407958 + 0.75 NA Intergenic MLT1L|LTR|ERVL-MaLR 506214 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 158.75-33 chr17 14431235 14431576 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 127665 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 194.25-28 chr3 117491764 117492151 + 0.75 NA Intergenic AluSc8|SINE|Alu 198968 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 173.5-17 chr12 33740871 33741208 + 0.75 NA Intergenic L1PA2|LINE|L1 -281457 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 342.5-4 chr3 98880031 98880885 + 0.75 NA intron (NM_080927, intron 2 of 15) intron (NM_080927, intron 2 of 15) 21237 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 210-44 chr5 16712519 16713095 + 0.75 NA intron (NM_012334, intron 19 of 40) intron (NM_012334, intron 19 of 40) -95749 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 168.25-2 chr1 185678289 185678686 + 0.75 NA Intergenic Intergenic -49999 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 369.25-4 chr4 62345070 62345567 + 0.75 NA Intergenic MLT1E3|LTR|ERVL-MaLR -183553 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 187.5-11 chr12 46058005 46058434 + 0.75 NA Intergenic L1MB5|LINE|L1 -67645 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 220-20 chr4 47453795 47454292 + 0.75 NA intron (NM_001329668, intron 3 of 4) intron (NM_001329668, intron 3 of 4) 9659 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 190.5-19 chr17 31839940 31840294 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR 18845 NM_001330176 55352 Hs.462729 NM_018405 ENSG00000172301 COPRS C17orf79|COPR5|HSA272196|TTP1 coordinator of PRMT5 and differentiation stimulator protein-coding 247.5-15 chr13 85748907 85749346 + 0.75 NA Intergenic MLT2C2|LTR|ERVL 50293 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 188.5-26 chr19 39649176 39649523 + 0.75 NA Intergenic L1PA6|LINE|L1 -6564 NM_001190441 148003 Hs.667238 NM_001190441 ENSG00000249861 LGALS16 - galectin 16 protein-coding 387.75-2 chr2 31279837 31280693 + 0.75 NA Intergenic MIR|SINE|MIR 46113 NM_014600 30845 Hs.368808 NM_014600 ENSG00000013016 EHD3 PAST3 EH domain containing 3 protein-coding 163.25-79 chr8 77284986 77285376 + 0.75 NA Intergenic MLT1H1|LTR|ERVL-MaLR -165516 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 150.25-55 chr2 190981860 190982132 + 0.75 NA intron (NM_007315, intron 18 of 24) intron (NM_007315, intron 18 of 24) 32254 NM_139266 6772 Hs.642990 NM_007315 ENSG00000115415 STAT1 CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91 signal transducer and activator of transcription 1 protein-coding 204.25-44 chr6 24353219 24353611 + 0.75 NA intron (NM_016356, intron 2 of 9) intron (NM_016356, intron 2 of 9) -3488 NM_181337 353219 Hs.697888 NM_181337 ENSG00000146049 KAAG1 RU2AS kidney associated antigen 1 protein-coding 156.5-3 chr1 63806970 63807270 + 0.75 NA intron (NM_005012, intron 1 of 8) Plat_L3|LINE|CR1 33103 NM_001083592 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 229.75-38 chr9 76242354 76242893 + 0.75 NA intron (NM_001190482, intron 24 of 36) intron (NM_001190482, intron 24 of 36) 151803 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 147.5-37 chr2 34521989 34522342 + 0.75 NA Intergenic L1ME3|LINE|L1 -155392 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 232.5-4 chr1 238603475 238603858 + 0.75 NA Intergenic Intergenic -117649 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 211-3 chr1 114599136 114599481 + 0.75 NA exon (NM_198459, exon 13 of 18) exon (NM_198459, exon 13 of 18) -17693 NM_005872 10286 Hs.22960 NM_005872 ENSG00000116752 BCAS2 DAM1|SPF27|Snt309 BCAS2 pre-mRNA processing factor protein-coding 274-10 chr6 96953670 96954167 + 0.75 NA intron (NM_001323252, intron 2 of 11) HAL1|LINE|L1 29190 NM_001323259 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 192-5 chr1 191686400 191686825 + 0.75 NA Intergenic Intergenic -458114 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 200.25 chr1 42472680 42473138 + 0.75 NA intron (NM_001355227, intron 1 of 18) intron (NM_001355227, intron 1 of 18) 9623 NM_001355227 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 148.5-83 chr5 165698870 165699243 + 0.75 NA Intergenic Intergenic 1227314 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 252.5-22 chr6 64897195 64897798 + 0.75 NA intron (NM_001292009, intron 18 of 43) L1PA7|LINE|L1 -403922 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 162-61 chr5 1306209 1306606 + 0.75 NA Intergenic AluJr|SINE|Alu 2970 NR_039662 100616235 NR_039662 ENSG00000263670 MIR4457 mir-4457 microRNA 4457 ncRNA 151.5-16 chr11 26022534 26022906 + 0.75 NA Intergenic Intergenic -166403 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 178.5-23 chr14 62515836 62516246 + 0.75 NA Intergenic Intergenic -376068 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 186.25-57 chr6 152569462 152569890 + 0.75 NA intron (NM_182961, intron 3 of 145) intron (NM_182961, intron 3 of 145) 67175 NM_033071 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 229.5-7 chr12 29518518 29519079 + 0.75 NA intron (NM_001367875, intron 14 of 19) intron (NM_001367875, intron 14 of 19) -19105 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 178.75-59 chr7 7045729 7046002 + 0.75 NA Intergenic Intergenic 21180 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 296.25-4 chr10 39499298 39499854 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 802980 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 206.75-38 chr4 78401443 78401812 + 0.75 NA intron (NM_001166133, intron 30 of 41) L1MEd|LINE|L1 112642 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 184.75-8 chr1 197603598 197603942 + 0.75 NA intron (NR_125340, intron 12 of 19) intron (NR_125340, intron 12 of 19) 171710 NR_125340 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 214.5-49 chr8 98997126 98997786 + 0.75 NA Intergenic L2c|LINE|L2 -15810 NR_047582 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 167-38 chr2 46636458 46637067 + 0.75 NA Intergenic HAL1|LINE|L1 19547 NM_014171 9419 Hs.133998 NM_014171 ENSG00000119878 CRIPT HSPC139|SSMDF CXXC repeat containing interactor of PDZ3 domain protein-coding 168.5-96 chr8 74202634 74203004 + 0.75 NA Intergenic MIR|SINE|MIR 118542 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 191.25-25 chr14 71297543 71298051 + 0.75 NA Intergenic Intergenic -22679 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 178.25-31 chr2 193062943 193063379 + 0.75 NA Intergenic L1M4c|LINE|L1 313316 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 193.5-25 chr16 22035780 22036225 + 0.75 NA intron (NM_001164579, intron 1 of 2) L1MB8|LINE|L1 27891 NM_001164579 730094 Hs.498890 NM_173501 ENSG00000185716 MOSMO ATTHOG|BC030336|C16orf52 modulator of smoothened protein-coding 226-5 chr12 115130964 115131614 + 0.75 NA Intergenic L1PB1|LINE|L1 -447114 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 181.5-63 chr6 164522780 164523169 + 0.75 NA Intergenic Intergenic 299089 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 261.25-9 chr4 93132608 93133111 + 0.75 NA intron (NM_001286838, intron 3 of 14) intron (NM_001286838, intron 3 of 14) -695894 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 296.5-12 chr3 117718465 117719100 + 0.75 NA Intergenic Intergenic -27857 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 153.25-47 chr17 67190059 67190487 + 0.75 NA exon (NM_014877, exon 10 of 33) exon (NM_014877, exon 10 of 33) -54503 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 206.25-24 chr20 58527604 58528136 + 0.75 NA intron (NR_034147, intron 5 of 6) (TA)n|Simple_repeat|Simple_repeat -12471 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 171-26 chr17 13445832 13446125 + 0.75 NA Intergenic AluJb|SINE|Alu 97668 NR_031679 100302287 NR_031679 ENSG00000221698 MIR548H3 MIR548H-3|MIRN548H3|hsa-mir-548h-3 microRNA 548h-3 ncRNA 168.75-7 chr1 246614160 246614456 + 0.75 NA intron (NM_152609, intron 2 of 10) Tigger4b|DNA|TcMar-Tigger 47852 NM_152609 163882 Hs.368353 NM_152609 ENSG00000162852 CNST C1orf71|PPP1R64 consortin, connexin sorting protein protein-coding 166-33 chr19 39542524 39542926 + 0.75 NA Intergenic Intergenic -2564 NM_153232 163126 Hs.18949 NM_153232 ENSG00000176396 EID2 CRI2|EID-2 EP300 interacting inhibitor of differentiation 2 protein-coding 251.25-33 chr9 33972930 33973276 + 0.75 NA intron (NM_001370059, intron 7 of 28) intron (NM_001370059, intron 7 of 28) -20249 NR_003685 100113379 NR_003685 ENSG00000238886 SNORD121A - small nucleolar RNA, C/D box 121A snoRNA 200.5-41 chr3 165484315 165484675 + 0.75 NA intron (NR_125764, intron 3 of 5) L1MB2|LINE|L1 277535 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 150.5-41 chr14 61189292 61189679 + 0.75 NA Intergenic Intergenic 91853 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 173-78 chr7 82543149 82543434 + 0.75 NA Intergenic Intergenic -99335 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 168.5-3 chr1 77021429 77021706 + 0.75 NA intron (NM_001320274, intron 2 of 2) intron (NM_001320274, intron 2 of 2) -38576 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 161.5-84 chr6 54314499 54315027 + 0.75 NA intron (NM_014464, intron 1 of 10) intron (NM_014464, intron 1 of 10) 6322 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 185.75 chr1 71412174 71412684 + 0.75 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 331105 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 213-22 chr4 108318018 108318346 + 0.75 NA Intergenic Intergenic 146062 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 208.5-17 chr14 27116620 27116977 + 0.75 NA Intergenic Intergenic 208156 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 209.25-21 chr2 29780905 29781274 + 0.75 NA intron (NM_004304, intron 1 of 28) L2c|LINE|L2 140497 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 232.25-15 chr15 100797659 100798195 + 0.75 NA Intergenic L1ME1|LINE|L1 -51825 NR_160703 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 238.5-39 chr8 109384661 109385125 + 0.75 NA intron (NM_177531, intron 5 of 77) L1ME3G|LINE|L1 22432 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 212.25-25 chr2 132480453 132480854 + 0.75 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 46942 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 214-21 chr2 167256467 167256827 + 0.75 NA intron (NM_001199144, intron 8 of 8) HAL1M8|LINE|L1 69275 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 161-46 chr2 69451552 69451882 + 0.75 NA Intergenic L2a|LINE|L2 -14089 NM_001002756 27247 Hs.430439 NM_015700 ENSG00000169599 NFU1 CGI-33|HIRIP|HIRIP5|MMDS1|NIFUC|Nfu|NifU NFU1 iron-sulfur cluster scaffold protein-coding 145.75-8 chr10 23939733 23940027 + 0.75 NA intron (NM_001098500, intron 1 of 18) (ATATAA)n|Simple_repeat|Simple_repeat 245153 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 158-68 chr5 77802288 77802572 + 0.75 NA Intergenic L1MC1|LINE|L1 -26069 NM_004607 6902 Hs.291212 NM_004607 ENSG00000171530 TBCA - tubulin folding cofactor A protein-coding 251.75-26 chrX 100037362 100037893 + 0.75 NA Intergenic L1PB1|LINE|L1 372646 NM_001105243 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 197.5-50 chr5 51449998 51450422 + 0.75 NA Intergenic Intergenic 66762 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 183-31 chr20 41915639 41915967 + 0.75 NA Intergenic L2a|LINE|L2 -297426 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 281-3 chr1 163969623 163970313 + 0.75 NA Intergenic Intergenic -546777 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 192-36 chr3 30228704 30229162 + 0.75 NA Intergenic Intergenic -289935 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 182.25-48 chr6 72216006 72216369 + 0.75 NA promoter-TSS (NM_001350472) promoter-TSS (NM_001350472) -334 NM_001168409 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 183.25-70 chr7 55558468 55559047 + 0.75 NA intron (NM_030796, intron 1 of 4) intron (NM_030796, intron 1 of 4) -4870 NM_001321248 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 226-28 chr6 154298311 154298761 + 0.75 NA intron (NM_015553, intron 1 of 11) intron (NM_015553, intron 1 of 11) 31545 NM_001130699 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 191-56 chrX 4461875 4462390 + 0.75 NA Intergenic Intergenic 171440 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 178.75-13 chr12 83065587 83065907 + 0.75 NA intron (NM_152588, intron 11 of 11) intron (NM_152588, intron 11 of 11) 378592 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 225.75-4 chr1 226430231 226430787 + 0.75 NA Intergenic Intergenic -22416 NM_001618 142 Hs.177766 NM_001618 ENSG00000143799 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly(ADP-ribose) polymerase 1 protein-coding 191.25-35 chr2 41293761 41294112 + 0.75 NA Intergenic Intergenic -583619 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 242.25-13 chr22 17289078 17289534 + 0.75 NA Intergenic Intergenic -22573 NR_038398 27442 Hs.517394 NR_038398 ENSG00000241832 CECR3 - cat eye syndrome chromosome region, candidate 3 ncRNA 197.25-39 chr4 185484166 185484484 + 0.75 NA Intergenic L1MB7|LINE|L1 -12592 NM_152775 256309 Hs.41101 NM_152775 ENSG00000168491 CCDC110 CT52|KM-HN-1|KMHN1 coiled-coil domain containing 110 protein-coding 173-57 chr4 63496552 63496858 + 0.75 NA Intergenic L1MA3|LINE|L1 912745 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 161-17 chr11 111483724 111484159 + 0.75 NA intron (NM_017589, intron 5 of 5) L1MA2|LINE|L1 -26661 NR_147706 728196 Hs.363156 NR_147706 ENSG00000286028 LOC728196 - uncharacterized LOC728196 ncRNA 174.75-36 chr2 220421996 220422497 + 0.75 NA Intergenic LTR79|LTR|ERVL -515681 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 166.25-73 chrX 40404247 40404719 + 0.75 NA Intergenic LTR26D|LTR|ERV1 141566 NR_110386 101927476 Hs.522607 NR_110386 ENSG00000236393 LOC101927476 - uncharacterized LOC101927476 ncRNA 173.25-18 chr12 58756341 58756845 + 0.75 NA intron (NR_120452, intron 1 of 7) intron (NR_120452, intron 1 of 7) 25123 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 188.5-37 chr3 55014993 55015429 + 0.75 NA intron (NM_018398, intron 34 of 37) intron (NM_018398, intron 34 of 37) -48109 NM_001304389 57408 Hs.591668 NM_020678 ENSG00000144771 LRTM1 HT017 leucine rich repeats and transmembrane domains 1 protein-coding 220.25-21 chr2 76420562 76421170 + 0.75 NA Intergenic AluJr4|SINE|Alu -565099 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 205.25-12 chr14 85915164 85915662 + 0.75 NA Intergenic L1MC1|LINE|L1 -19265 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 151-91 chr7 88787846 88788119 + 0.75 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) 7755 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 152-99 chr8 134748186 134748553 + 0.75 NA Intergenic L1ME3A|LINE|L1 -35338 NM_001289394 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 194-15 chr11 111611424 111611726 + 0.75 NA intron (NM_015191, intron 1 of 14) intron (NM_015191, intron 1 of 14) 9126 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 272.25 chr1 220163736 220164386 + 0.75 NA intron (NM_012414, intron 27 of 34) intron (NM_012414, intron 27 of 34) 36558 NR_031705 100302234 NR_031705 ENSG00000281696 MIR664A MIR664|MIRN664|hsa-mir-664|hsa-mir-664a|mir-664a microRNA 664a ncRNA 156.25-67 chr5 20299889 20300190 + 0.75 NA intron (NM_001349556, intron 1 of 13) intron (NM_001349556, intron 1 of 13) -5512 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 201.75-29 chr4 111252383 111252731 + 0.75 NA Intergenic Intergenic -391910 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 394 chr4 35092824 35093643 + 0.75 NA Intergenic Intergenic -823486 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 157.5-76 chr5 71944539 71944945 + 0.75 NA Intergenic Intergenic -162733 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 174-43 chr4 64157398 64157686 + 0.75 NA Intergenic MSTA-int|LTR|ERVL-MaLR 251908 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 190.25-25 chr3 33402683 33403250 + 0.75 NA intron (NM_001128160, intron 7 of 14) intron (NM_001128160, intron 7 of 14) 37412 NM_001128160 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 205.75-26 chr15 94995675 94996027 + 0.75 NA Intergenic Intergenic 140488 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 316.25 chr1 169166607 169167314 + 0.75 NA intron (NR_104229, intron 12 of 12) AluSx|SINE|Alu 60270 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 146-42 chr2 51850103 51850510 + 0.75 NA intron (NR_135237, intron 6 of 10) L1MB7|LINE|L1 -520342 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 166-79 chr8 102857651 102857925 + 0.75 NA intron (NM_001363083, intron 2 of 12) intron (NM_001363083, intron 2 of 12) 6375 NM_001301668 51582 Hs.459106 NM_015878 ENSG00000155096 AZIN1 AZI|AZI1|AZIA1|OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 184.25-53 chr5 13338422 13338839 + 0.75 NA Intergenic L1M8|LINE|L1 -305744 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 186-36 chr4 124623900 124624237 + 0.75 NA Intergenic MSTD-int|LTR|ERVL-MaLR -65634 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 221-8 chr12 5901495 5901960 + 0.75 NA intron (NM_001278596, intron 3 of 25) intron (NM_001278596, intron 3 of 25) 43532 NM_001278596 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 203.25-31 chr4 101623898 101624508 + 0.75 NA Intergenic Intergenic -166404 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 197-11 chr18 52581589 52581967 + 0.75 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 241581 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 199.5-38 chr4 75818695 75819231 + 0.75 NA Intergenic AluSq2|SINE|Alu 83489 NM_006239 5470 Hs.290873 NM_006239 ENSG00000156194 PPEF2 PPP7CB protein phosphatase with EF-hand domain 2 protein-coding 202.25-13 chr12 797065 797605 + 0.75 NA intron (NM_001184985, intron 1 of 27) intron (NM_001184985, intron 1 of 27) 44412 NM_001184985 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 203-4 chr10 34380167 34380456 + 0.75 NA intron (NM_001184789, intron 9 of 22) intron (NM_001184789, intron 9 of 22) 434985 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 217.75-38 chr9 28916772 28917236 + 0.75 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) -28049 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 218.25-30 chr4 137081888 137082363 + 0.75 NA intron (NR_149105, intron 2 of 3) intron (NR_149105, intron 2 of 3) -111631 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 148.5-66 chr3 191254700 191255124 + 0.75 NA intron (NM_198184, intron 4 of 4) LTR49-int|LTR|ERV1 -20307 NR_133663 106480738 NR_133663 ENSG00000233308 OSTN-AS1 - OSTN antisense RNA 1 ncRNA 232.5-21 chr2 190157522 190157987 + 0.75 NA intron (NM_001042520, intron 1 of 1) intron (NM_001042520, intron 1 of 1) 7508 NM_001042520 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 225.5-20 chr2 60122599 60123131 + 0.75 NA Intergenic Intergenic 260171 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 245.5-16 chr2 102122889 102123431 + 0.75 NA intron (NM_001320980, intron 1 of 11) intron (NM_001320980, intron 1 of 11) 18556 NM_001320986 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 241.25-6 chr11 34675426 34675931 + 0.75 NA Intergenic Intergenic 43112 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 183-15 chr14 62815212 62815663 + 0.75 NA intron (NM_139318, intron 8 of 10) L1ME3A|LINE|L1 230021 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 153.75-20 chr16 54802820 54803158 + 0.75 NA Intergenic Intergenic 45244 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 176.5-35 chr2 44107564 44108066 + 0.75 NA Intergenic Intergenic -60988 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 193.25-41 chr3 191942038 191942422 + 0.75 NA Intergenic Intergenic -296400 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 249 chr10 26091248 26091648 + 0.75 NA intron (NM_017433, intron 15 of 34) intron (NM_017433, intron 15 of 34) -124859 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 152.75-76 chr5 52636803 52637061 + 0.75 NA Intergenic Intergenic -150984 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 152.5-71 chr3 107592178 107592633 + 0.75 NA intron (NM_001276286, intron 2 of 16) intron (NM_001276286, intron 2 of 16) 69443 NM_020235 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 242.75-16 chr2 39273189 39273875 + 0.75 NA intron (NM_003618, intron 24 of 33) intron (NM_003618, intron 24 of 33) -29549 NR_144521 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 207.5-8 chr10 115973078 115973529 + 0.75 NA Intergenic Intergenic 221486 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 247.25-16 chr5 25327479 25328185 + 0.75 NA Intergenic Intergenic 136879 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 169.25-21 chr17 18933617 18933948 + 0.75 NA Intergenic Intergenic -16894 NM_001282417 125206 Hs.462418 NM_152351 ENSG00000154025 SLC5A10 SGLT-5|SGLT5 solute carrier family 5 member 10 protein-coding 254-12 chr5 152430451 152430858 + 0.75 NA Intergenic L2|LINE|L2 -25375 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 275.5-17 chr4 165989986 165990393 + 0.75 NA intron (NM_001204760, intron 2 of 9) intron (NM_001204760, intron 2 of 9) 116952 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 183.75-20 chr11 108692571 108692947 + 0.75 NA intron (NM_004398, intron 8 of 17) intron (NM_004398, intron 8 of 17) 27690 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 280-5 chr18 8800427 8801074 + 0.75 NA intron (NM_015210, intron 10 of 16) intron (NM_015210, intron 10 of 16) 83369 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 294.25-9 chr3 67532927 67533529 + 0.75 NA intron (NM_001177599, intron 2 of 10) intron (NM_001177599, intron 2 of 10) 121386 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 253.25 chr10 65179423 65179935 + 0.75 NA Intergenic Intergenic -255161 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 223.75 chr1 4937189 4937565 + 0.75 NA Intergenic Intergenic 282768 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 275.75-6 chr17 28715368 28716169 + 0.75 NA intron (NM_031934, intron 4 of 9) intron (NM_031934, intron 4 of 9) 2100 NM_001256281 83871 Hs.301853 NM_031934 ENSG00000109113 RAB34 NARR|RAB39|RAH RAB34, member RAS oncogene family protein-coding 365.25-3 chr2 50372612 50373156 + 0.75 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -25128 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 165.75-4 chr1 61204569 61204848 + 0.75 NA intron (NM_001134673, intron 2 of 10) intron (NM_001134673, intron 2 of 10) 48810 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 189.75-13 chr1 175911191 175911620 + 0.75 NA Intergenic MER57A-int|LTR|ERV1 34062 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 176-33 chr2 102507401 102507664 + 0.75 NA intron (NM_001011552, intron 4 of 11) intron (NM_001011552, intron 4 of 11) 34306 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 171.25-63 chr8 123973881 123974187 + 0.75 NA intron (NM_001039112, intron 7 of 40) intron (NM_001039112, intron 7 of 40) 66748 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 183.5-44 chr3 136728065 136728363 + 0.75 NA intron (NM_005862, intron 1 of 33) intron (NM_005862, intron 1 of 33) 24164 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 150.75-45 chr2 199421079 199421403 + 0.75 NA intron (NR_134967, intron 3 of 4) intron (NR_134967, intron 3 of 4) 36698 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 224.75-14 chr14 37030494 37031047 + 0.75 NA intron (NM_001171170, intron 1 of 10) intron (NM_001171170, intron 1 of 10) -78379 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 168.75-78 chr4 103180710 103181078 + 0.75 NA intron (NM_001813, intron 12 of 48) intron (NM_001813, intron 12 of 48) 17449 NM_001813 1062 Hs.75573 NM_001813 ENSG00000138778 CENPE CENP-E|KIF10|MCPH13|PPP1R61 centromere protein E protein-coding 252.75-8 chr16 2355921 2356376 + 0.75 NA intron (NR_003574, intron 1 of 16) AluJr|SINE|Alu 15226 NR_003574 650655 Hs.376281 NR_003574 ENSG00000238098 ABCA17P ABCA17 ATP binding cassette subfamily A member 17, pseudogene pseudo 240.25-17 chr4 148222952 148223403 + 0.75 NA intron (NM_000901, intron 3 of 8) intron (NM_000901, intron 3 of 8) 219237 NR_148974 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 290.5-4 chr11 122767720 122768377 + 0.75 NA intron (NM_001363365, intron 1 of 13) MIRc|SINE|MIR -70452 NM_019604 56253 Hs.159523 NM_019604 ENSG00000109943 CRTAM CD355 cytotoxic and regulatory T cell molecule protein-coding 146-27 chr16 10724111 10724371 + 0.75 NA Intergenic Intergenic -19545 NM_001278506 4682 Hs.81469 NM_002484 ENSG00000103274 NUBP1 CIAO5|NBP|NBP1|NBP35 nucleotide binding protein 1 protein-coding 148.5-62 chr3 89512416 89512766 + 0.75 NA Intergenic L1M4|LINE|L1 404970 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 166.75-92 chr8 112283055 112283322 + 0.75 NA intron (NM_001363185, intron 54 of 66) intron (NM_001363185, intron 54 of 66) -360305 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 207.75-26 chr21 29484516 29484886 + 0.75 NA Intergenic Intergenic -11346 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 166.25-58 chr6 155186237 155186510 + 0.75 NA intron (NM_012454, intron 13 of 25) LTR16E1|LTR|ERVL -30593 NM_001010927 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 159.25-54 chr3 108175402 108175630 + 0.75 NA intron (NM_018010, intron 6 of 10) intron (NM_018010, intron 6 of 10) 46908 NM_018010 55081 Hs.412196 NM_018010 ENSG00000114446 IFT57 ESRRBL1|HIPPI|MHS4R2|OFD18 intraflagellar transport 57 protein-coding 202.25-46 chr5 55943557 55943995 + 0.75 NA intron (NR_157112, intron 16 of 17) L1ME1|LINE|L1 51187 NR_157112 3572 Hs.532082 NM_002184 ENSG00000134352 IL6ST CD130|CDW130|GP130|IL-6RB interleukin 6 signal transducer protein-coding 156.5-54 chr2 179102326 179102613 + 0.75 NA 3' UTR (NM_178123, exon 18 of 18) 3' UTR (NM_178123, exon 18 of 18) -52332 NM_173648 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 203.5-59 chr6 38989712 38990274 + 0.75 NA intron (NM_001371, intron 86 of 91) intron (NM_001371, intron 86 of 91) -36886 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 203-33 chr4 160720809 160721296 + 0.75 NA Intergenic Intergenic -943268 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 356.25-6 chr7 96482568 96483186 + 0.75 NA non-coding (NR_163948, exon 5 of 5) non-coding (NR_163948, exon 5 of 5) 20646 NR_163949 177.5-43 chr5 3132584 3132977 + 0.75 NA Intergenic Intergenic -45055 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 152-74 chr5 72791609 72791849 + 0.75 NA Intergenic Intergenic -24862 NM_002270 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 158.5-78 chr4 113821095 113821602 + 0.75 NA Intergenic L2a|LINE|L2 -59421 NM_172114 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 219-12 chr2 193371225 193371726 + 0.75 NA Intergenic Intergenic 621630 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 149-89 chr6 17626322 17626725 + 0.75 NA intron (NM_005124, intron 18 of 21) intron (NM_005124, intron 18 of 21) 26221 NM_016255 51439 Hs.95260 NM_016255 ENSG00000137414 FAM8A1 AHCP family with sequence similarity 8 member A1 protein-coding 210.25-18 chr2 33271862 33272216 + 0.75 NA intron (NM_206943, intron 15 of 33) intron (NM_206943, intron 15 of 33) 137442 NM_001166266 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 256.75-26 chr8 130251792 130252234 + 0.75 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 44520 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 337.75-5 chr9 76054352 76054975 + 0.75 NA intron (NR_120409, intron 5 of 19) intron (NR_120409, intron 5 of 19) 163990 NM_006200 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 179.5-3 chr1 110864751 110865096 + 0.75 NA Intergenic L1PA15|LINE|L1 -6276 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 236-9 chr13 108414841 108415480 + 0.75 NA Intergenic Intergenic 145531 NM_001145645 10673 Hs.525157 NM_006573 ENSG00000102524 TNFSF13B BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4 TNF superfamily member 13b protein-coding 166.25-53 chr5 52143982 52144226 + 0.75 NA Intergenic L1MB7|LINE|L1 136073 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 293-2 chr10 95794904 95795441 + 0.75 NA intron (NR_038444, intron 4 of 5) L2b|LINE|L2 39009 NM_001776 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 201-10 chr13 38906459 38906795 + 0.75 NA Intergenic L1MEg|LINE|L1 -79036 NR_146963 100874073 Hs.253994 NR_146963 FREM2-AS1 - FREM2 antisense RNA 1 ncRNA 256.5-13 chr4 61528666 61529366 + 0.75 NA intron (NM_001371343, intron 4 of 23) LTR102_Mam|LTR|ERVL 326844 NM_001371342 146.5-15 chr11 43829592 43829907 + 0.75 NA intron (NM_016142, intron 6 of 10) intron (NM_016142, intron 6 of 10) -51082 NM_139178 221120 Hs.720708 NM_139178 ENSG00000166199 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1|hABH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding 157.5-110 chr8 128283321 128283657 + 0.75 NA Intergenic L1ME3A|LINE|L1 133373 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 180-62 chr7 35436120 35436411 + 0.75 NA Intergenic Intergenic 122410 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 323.75-5 chr20 2075024 2075558 + 0.75 NA Intergenic L1MCa|LINE|L1 -26536 NM_080836 140901 Hs.100057 NM_080836 ENSG00000125834 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 224.5-33 chr7 114112953 114113297 + 0.75 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 26798 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 303 chr1 117405434 117406000 + 0.75 NA intron (NM_006699, intron 3 of 12) intron (NM_006699, intron 3 of 12) 38268 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 196.75-54 chr8 92012194 92012751 + 0.75 NA intron (NM_004349, intron 3 of 10) AluJb|SINE|Alu 5208 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 182-44 chr5 24532641 24532999 + 0.75 NA intron (NM_001362460, intron 5 of 9) MIRc|SINE|MIR 112158 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 182.75-35 chr2 58088576 58088921 + 0.75 NA intron (NM_001130483, intron 6 of 13) intron (NM_001130483, intron 6 of 13) 42036 NM_001130481 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 215.5-23 chr2 17775318 17775701 + 0.75 NA intron (NM_182625, intron 11 of 13) intron (NM_182625, intron 11 of 13) 21371 NM_001130009 348654 Hs.467793 NM_182625 ENSG00000178295 GEN1 Gen GEN1 Holliday junction 5' flap endonuclease protein-coding 148.75-28 chr14 48211547 48211807 + 0.75 NA Intergenic Intergenic -416663 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 239.5-13 chr14 30682859 30683374 + 0.75 NA intron (NM_016106, intron 14 of 24) intron (NM_016106, intron 14 of 24) 60797 NM_016106 23256 Hs.369168 NM_016106 ENSG00000092108 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 151.25-29 chr15 80708440 80708748 + 0.75 NA intron (NM_021214, intron 1 of 2) AluSz6|SINE|Alu 13284 NM_021214 58489 Hs.459072 NM_021214 ENSG00000136379 ABHD17C FAM108C1 abhydrolase domain containing 17C protein-coding 184-3 chr1 168882542 168882842 + 0.75 NA Intergenic Intergenic 95751 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 159.25-32 chr2 10017828 10018202 + 0.75 NA Intergenic AluSx|SINE|Alu 25386 NR_135558 101929882 Hs.405158 NR_135558 LOC101929882 - uncharacterized LOC101929882 ncRNA 224.5-24 chr4 117855049 117855529 + 0.75 NA intron (NR_147154, intron 1 of 1) L1MA4A|LINE|L1 20888 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 156.25-95 chr8 114036475 114036878 + 0.75 NA Intergenic L1PB3|LINE|L1 -599737 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 153.75-49 chr3 125059978 125060357 + 0.75 NA Intergenic L2c|LINE|L2 -4170 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF like domains 1 protein-coding 199.75-57 chr8 107025361 107025677 + 0.75 NA Intergenic Intergenic -255275 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 180-69 chr8 77273697 77274124 + 0.75 NA Intergenic Intergenic -176787 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 189-41 chr3 147110208 147110794 + 0.75 NA Intergenic Intergenic 188578 NR_135560 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 308-5 chr2 63565072 63565583 + 0.75 NA intron (NR_148705, intron 1 of 16) X7C_LINE|LINE|CR1 23150 NM_015910 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 152-25 chr15 50862801 50863088 + 0.75 NA Intergenic Intergenic -45739 NM_007347 23431 Hs.413366 NM_007347 ENSG00000081014 AP4E1 CPSQ4|SPG51|STUT1 adaptor related protein complex 4 subunit epsilon 1 protein-coding 163-73 chr7 10827088 10827359 + 0.75 NA Intergenic MER57-int|LTR|ERV1 -47279 NR_147499 79150 Hs.571301 NM_024304 ENSG00000283117 MGC4859 - uncharacterized LOC79150 ncRNA 184.25-50 chr4 70059764 70060070 + 0.75 NA Intergenic L1P4|LINE|L1 -7469 NR_003720 286828 Hs.631945 NR_003720 ENSG00000234124 CSN1S2AP CSN1S2A casein alpha s2 like A, pseudogene pseudo 148.75-55 chr20 16931903 16932228 + 0.75 NA Intergenic L1PA8A|LINE|L1 183712 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 202.75-42 chr7 47290817 47291419 + 0.75 NA intron (NM_022748, intron 27 of 30) L1MC1|LINE|L1 173685 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 174.75-12 chr10 67806042 67806523 + 0.75 NA intron (NM_021800, intron 3 of 4) intron (NM_021800, intron 3 of 4) 31897 NM_201262 56521 Hs.260720 NM_021800 ENSG00000108176 DNAJC12 HPANBH4|JDP1 DnaJ heat shock protein family (Hsp40) member C12 protein-coding 177.5-65 chrX 147510440 147510740 + 0.75 NA Intergenic Intergenic -225862 NR_030239 574517 NR_030239 ENSG00000207866 MIR514A2 MIR514-2|MIRN514-2|hsa-mir-514a-2 microRNA 514a-2 ncRNA 212.75-13 chr19 56044039 56044531 + 0.75 NA intron (NM_153447, intron 11 of 14) AluSx1|SINE|Alu -22399 NR_110741 101928886 Hs.434652 NR_110741 ENSG00000267522 LINC01864 - long intergenic non-protein coding RNA 1864 ncRNA 226.5-18 chr21 27333665 27334260 + 0.75 NA Intergenic L1PB1|LINE|L1 -366874 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 299.5-6 chr16 82568498 82569133 + 0.75 NA Intergenic L2b|LINE|L2 -58154 NM_001220489 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 148.5-29 chr15 71616513 71616886 + 0.75 NA intron (NM_001286429, intron 1 of 11) L3|LINE|CR1 69463 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 154-31 chr14 60729149 60729590 + 0.75 NA Intergenic L2b|LINE|L2 -5018 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 176.25-9 chr10 71916967 71917291 + 0.75 NA Intergenic PABL_A-int|LTR|ERV1 -47266 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 255.5-8 chr12 66768962 66769424 + 0.75 NA intron (NM_001366724, intron 1 of 23) intron (NM_001366724, intron 1 of 23) 35076 NM_001366724 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 FRASRS3|GRIP glutamate receptor interacting protein 1 protein-coding 202.75-32 chr4 78405835 78406220 + 0.75 NA intron (NM_001166133, intron 30 of 41) intron (NM_001166133, intron 30 of 41) 117042 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 268.25 chr1 22927679 22928089 + 0.75 NA Intergenic AluSz6|SINE|Alu 44982 NM_001289974 646262 NM_001289974 ENSG00000215906 LACTBL1 - lactamase beta like 1 protein-coding 145.75-68 chr21 34237504 34237874 + 0.75 NA Intergenic L1PREC2|LINE|L1 57012 NR_027266 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 181.5-47 chr3 3515321 3515749 + 0.75 NA Intergenic Intergenic -283896 NM_020873 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 238-13 chr3 142580516 142581041 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 -2045 NM_001184 545 Hs.271791 NM_001184 ENSG00000175054 ATR FCTCS|FRP1|MEC1|SCKL|SCKL1 ATR serine/threonine kinase protein-coding 181.75-23 chr13 32042892 32043214 + 0.75 NA intron (NM_023037, intron 1 of 60) THE1B|LTR|ERVL-MaLR 11279 NM_023037 10129 Hs.507669 NM_023037 ENSG00000073910 FRY 13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1 FRY microtubule binding protein protein-coding 183-33 chr4 11967490 11967876 + 0.75 NA Intergenic Intergenic 184505 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 239-16 chr7 70736938 70737475 + 0.75 NA intron (NM_015570, intron 6 of 18) intron (NM_015570, intron 6 of 18) -394938 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 244.25-18 chr4 53857272 53857805 + 0.75 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR 129744 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 206.25-9 chr11 32175857 32176316 + 0.75 NA Intergenic Intergenic -32174 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 205-23 chr2 15234910 15235450 + 0.75 NA intron (NR_052013, intron 45 of 50) MIRb|SINE|MIR 326154 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 204.75-50 chr6 152420678 152421121 + 0.75 NA intron (NM_182961, intron 39 of 145) LTR49-int|LTR|ERV1 40369 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 201-29 chr5 28692163 28692635 + 0.75 NA Intergenic Intergenic -234471 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 164.75-86 chr7 113211252 113211698 + 0.75 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -92893 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 211-29 chr4 57356997 57357370 + 0.75 NA Intergenic Intergenic -68689 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 176.75-78 chr6 109806037 109806378 + 0.75 NA intron (NM_014845, intron 22 of 22) intron (NM_014845, intron 22 of 22) 114986 NM_014845 9896 Hs.529959 NM_014845 ENSG00000112367 FIG4 ALS11|BTOP|CMT4J|KIAA0274|SAC3|YVS|dJ249I4.1 FIG4 phosphoinositide 5-phosphatase protein-coding 168.5-35 chr16 14083882 14084229 + 0.75 NA intron (NM_001308142, intron 2 of 16) intron (NM_001308142, intron 2 of 16) 12736 NM_001365421 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 173.75-57 chr6 47427547 47427987 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR -50022 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 156.25-2 chr1 150520181 150520555 + 0.75 NA Intergenic L1MB4|LINE|L1 4611 NR_051960 100874054 Hs.576460 NR_051960 ENSG00000228126 FALEC FAL1|LINC00568|ncRNA-a1 focally amplified long non-coding RNA in epithelial cancer ncRNA 198.25-51 chr7 4048698 4049135 + 0.75 NA intron (NM_152744, intron 17 of 44) intron (NM_152744, intron 17 of 44) -80769 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 164.75-60 chr4 61147386 61147800 + 0.75 NA intron (NR_147148, intron 3 of 3) intron (NR_147148, intron 3 of 3) 3937 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 176.5-36 chr2 54280152 54280582 + 0.75 NA intron (NM_001320589, intron 4 of 4) intron (NM_001320589, intron 4 of 4) -24138 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 254.25-9 chr21 28967613 28967980 + 0.75 NA intron (NM_015565, intron 9 of 29) MER21B|LTR|ERVL 25081 NM_001320766 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 157.5-94 chr7 11591695 11592012 + 0.75 NA intron (NM_015204, intron 3 of 26) intron (NM_015204, intron 3 of 26) 240345 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 151-24 chr16 12368368 12368732 + 0.75 NA intron (NM_032167, intron 16 of 20) L2c|LINE|L2 -351771 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 260-3 chr2 54805749 54806292 + 0.75 NA intron (NM_001039753, intron 1 of 40) L1ME1|LINE|L1 81008 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 233-32 chr7 51921183 51921771 + 0.75 NA Intergenic L1ME4a|LINE|L1 -528221 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 228.5-44 chr7 40607957 40608637 + 0.75 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 371642 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 227.5-38 chr9 115649107 115649520 + 0.75 NA Intergenic Intergenic 94926 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 187.75-53 chr4 88188220 88188656 + 0.75 NA intron (NM_001257386, intron 1 of 15) FLAM_C|SINE|Alu -29115 NM_001348989 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 222.75-25 chr3 125227415 125227723 + 0.75 NA 3' UTR (NM_021964, exon 9 of 9) 3' UTR (NM_021964, exon 9 of 9) -14804 NM_024628 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 219.25-13 chr14 62061290 62061706 + 0.75 NA intron (NM_001367661, intron 4 of 8) L1MEf|LINE|L1 -55859 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 184.5-44 chr2 82496328 82496651 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL -360314 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 174.5 chr1 51169806 51170155 + 0.75 NA Intergenic MamRep1527|LTR|LTR 65116 NR_147076 105378716 NR_147076 ENSG00000203356 LINC01562 - long intergenic non-protein coding RNA 1562 ncRNA 162.5-9 chr1 155596364 155596639 + 0.75 NA Intergenic Intergenic -13669 NM_001350773 55154 Hs.656547 NM_018116 ENSG00000125459 MSTO1 LST005|MMYAT|MST misato mitochondrial distribution and morphology regulator 1 protein-coding 167.75-5 chr1 95915740 95916164 + 0.75 NA Intergenic L1ME2|LINE|L1 -76116 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 224.25-31 chr6 129074732 129075147 + 0.75 NA intron (NM_000426, intron 3 of 64) L2b|LINE|L2 191798 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 270-16 chr8 47770377 47770855 + 0.75 NA Intergenic L1M4|LINE|L1 -32452 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT enhancer binding protein delta protein-coding 238.75-35 chr9 27011848 27012317 + 0.75 NA intron (NM_001099224, intron 10 of 13) intron (NM_001099224, intron 10 of 13) -6410 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 170.25-34 chr2 172946600 172947146 + 0.75 NA intron (NM_001282901, intron 1 of 24) Helitron1Nb_Mam|RC|Helitron 18668 NM_001282901 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 180.5-16 chr13 62476075 62476390 + 0.75 NA Intergenic L1M4c|LINE|L1 152575 NR_047038 100874180 Hs.7415 NR_047038 ENSG00000229307 LINC00459 - long intergenic non-protein coding RNA 459 ncRNA 169.75-45 chr20 12840594 12840909 + 0.75 NA Intergenic MER8|DNA|TcMar-Tigger 96212 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 153.75-13 chr13 81360800 81361206 + 0.75 NA Intergenic Intergenic -134020 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 188-56 chr8 123970981 123971414 + 0.75 NA intron (NM_001039112, intron 6 of 40) MamTip2|DNA|hAT-Tip100 69585 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 199.5-46 chr6 95976087 95976444 + 0.75 NA Intergenic Intergenic -39709 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 191.25-24 chr14 51235105 51235513 + 0.75 NA Intergenic L1M4b|LINE|L1 -4938 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 174.5-77 chr7 109345289 109345548 + 0.75 NA Intergenic Intergenic -460831 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 168.75-29 chr17 60828613 60828877 + 0.75 NA intron (NM_001330413, intron 7 of 25) intron (NM_001330413, intron 7 of 25) 150894 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 266.75-9 chr19 28811062 28811786 + 0.75 NA Intergenic AluJr|SINE|Alu -83730 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 238-23 chr9 108655091 108655632 + 0.75 NA Intergenic Intergenic 200625 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 169.25-22 chr17 70712935 70713375 + 0.75 NA Intergenic Intergenic 489024 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 240.75-20 chr5 116313261 116313846 + 0.75 NA Intergenic L1MA2|LINE|L1 57810 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 229.75-2 chr1 185297038 185297513 + 0.75 NA 3' UTR (NM_006469, exon 15 of 15) 3' UTR (NM_006469, exon 15 of 15) 19968 NM_006469 10625 Hs.497183 NM_006469 ENSG00000116679 IVNS1ABP ARA3|FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP influenza virus NS1A binding protein protein-coding 189.5-31 chr2 75953736 75954278 + 0.75 NA Intergenic Intergenic -243092 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 243.25-21 chr4 71498983 71499446 + 0.75 NA intron (NM_003759, intron 13 of 22) intron (NM_003759, intron 13 of 22) 160161 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 184-15 chr14 69872102 69872465 + 0.75 NA Intergenic L2b|LINE|L2 -7133 NM_022137 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 183-57 chr8 137790144 137790551 + 0.75 NA Intergenic Intergenic 293198 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 277.25-7 chr4 104372255 104373058 + 0.75 NA Intergenic Intergenic -118309 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 216-2 chr1 73378052 73378504 + 0.75 NA Intergenic Intergenic 72108 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 179-37 chr21 29890756 29891028 + 0.75 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 49104 NM_001330994 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 215-19 chr22 34237162 34237542 + 0.75 NA Intergenic L1PA16|LINE|L1 -314464 NM_001362951 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 182-13 chr12 16367648 16368096 + 0.75 NA intron (NM_001267598, intron 3 of 3) MamRep605|LTR?|LTR? 14455 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 146.5-27 chr14 50477859 50478219 + 0.75 NA intron (NM_198794, intron 6 of 31) L1ME4a|LINE|L1 54530 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 178.25-35 chr3 19957516 19957928 + 0.75 NA intron (NM_001292048, intron 2 of 5) AluSz6|SINE|Alu 10625 NM_004162 5868 Hs.475663 NM_004162 ENSG00000144566 RAB5A RAB5 RAB5A, member RAS oncogene family protein-coding 211-11 chr11 44309393 44309853 + 0.75 NA exon (NM_021926, exon 1 of 4) exon (NM_021926, exon 1 of 4) 516 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 167.25-88 chrX 46014277 46014718 + 0.75 NA Intergenic L1M5|LINE|L1 -163007 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 188.75-30 chr2 37350364 37350946 + 0.75 NA intron (NM_012413, intron 1 of 6) MIR3|SINE|MIR 6025 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 238.5-19 chr2 57164194 57164599 + 0.75 NA Intergenic Intergenic -743255 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 231-15 chr3 58139871 58140260 + 0.75 NA intron (NM_001164319, intron 29 of 44) intron (NM_001164319, intron 29 of 44) 30570 NR_135534 105377105 Hs.613914 NR_135534 ENSG00000244161 FLNB-AS1 - FLNB antisense RNA 1 ncRNA 211.5-7 chr10 51526950 51527478 + 0.75 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 172381 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 214.5-6 chr12 971470 971959 + 0.75 NA intron (NM_001297419, intron 1 of 11) intron (NM_001297419, intron 1 of 11) 18327 NM_001297419 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 192.25-49 chr4 165553224 165553781 + 0.75 NA Intergenic Intergenic -131137 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 188.5-30 chr21 24466042 24466536 + 0.75 NA intron (NR_135520, intron 4 of 5) intron (NR_135520, intron 4 of 5) 37549 NR_135519 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 201.25-2 chr1 85264056 85264399 + 0.75 NA Intergenic Intergenic -4565 NM_198077 148423 Hs.26226 NM_198077 ENSG00000162642 C1orf52 gm117 chromosome 1 open reading frame 52 protein-coding 188.25-21 chr18 6505690 6506148 + 0.75 NA Intergenic A-rich|Low_complexity|Low_complexity -5497 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 198-24 chr4 33041245 33041638 + 0.75 NA Intergenic AluSx1|SINE|Alu 690403 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 256.25-13 chr22 37664280 37664737 + 0.75 NA intron (NM_020315, intron 1 of 1) MIRb|SINE|MIR 5785 NM_020315 57026 Hs.632762 NM_020315 ENSG00000241360 PDXP CIN|PLP|dJ37E16.5 pyridoxal phosphatase protein-coding 258.75-7 chr14 46913945 46914386 + 0.75 NA intron (NM_001113498, intron 10 of 16) intron (NM_001113498, intron 10 of 16) -262384 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 197.5-47 chr4 101641327 101641707 + 0.75 NA Intergenic Intergenic -149090 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 183.25-76 chr8 103895334 103895805 + 0.75 NA intron (NM_001282881, intron 2 of 20) MLT1A|LTR|ERVL-MaLR 76349 NM_001348509 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 209.5-6 chr10 67693600 67693938 + 0.75 NA intron (NM_013266, intron 1 of 17) intron (NM_013266, intron 1 of 17) 2426 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 215-29 chr5 89432417 89432873 + 0.75 NA intron (NR_136221, intron 5 of 6) HAL1ME|LINE|L1 -528540 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 205.5-4 chr10 58582000 58582440 + 0.75 NA intron (NM_001080512, intron 1 of 20) L1ME4b|LINE|L1 69348 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 212.5-8 chr11 56463705 56464274 + 0.75 NA promoter-TSS (NM_001004743) promoter-TSS (NM_001004743) -588 NM_001004743 390162 Hs.553749 NM_001004743 ENSG00000150269 OR5M9 OR11-190 olfactory receptor family 5 subfamily M member 9 protein-coding 207-12 chr14 64584233 64584722 + 0.75 NA intron (NM_172365, intron 8 of 11) intron (NM_172365, intron 8 of 11) 34516 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 189.25-16 chr14 53758029 53758440 + 0.75 NA Intergenic L1PA15|LINE|L1 190250 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 268-14 chr5 120844700 120845283 + 0.75 NA Intergenic Intergenic 313527 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 295.5-2 chr16 79325764 79326459 + 0.75 NA Intergenic Intergenic 274626 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 169.5-5 chr1 163661389 163661700 + 0.75 NA Intergenic Intergenic -238353 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 323.25-3 chr4 31978705 31979515 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR -18269 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 202.5-8 chr11 28417225 28417544 + 0.75 NA Intergenic Intergenic 60164 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 272-13 chr5 122497799 122498205 + 0.75 NA Intergenic Intergenic -18915 NR_051996 153163 Hs.679757 NR_051996 ENSG00000250328 MGC32805 - uncharacterized LOC153163 ncRNA 217-16 chr20 33315480 33315842 + 0.75 NA Intergenic Intergenic 32447 NM_033197 92747 Hs.65551 NM_033197 ENSG00000125999 BPIFB1 C20orf114|LPLUNC1 BPI fold containing family B member 1 protein-coding 289.25-18 chr8 99114743 99115365 + 0.75 NA intron (NR_047582, intron 7 of 8) intron (NR_047582, intron 7 of 8) 101788 NM_015243 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 243-2 chr10 5720208 5720914 + 0.75 NA 5' UTR (NM_001321785, exon 5 of 21) 5' UTR (NM_001321785, exon 5 of 21) 35723 NM_001321785 54906 Hs.610717 NM_017782 ENSG00000108021 TASOR2 C10orf18|FAM208B|bA318E3.2 transcription activation suppressor family member 2 protein-coding 213-13 chr2 81380775 81381129 + 0.75 NA Intergenic L1MEc|LINE|L1 85994 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 180.75-66 chr8 28538561 28538833 + 0.75 NA intron (NM_017412, intron 5 of 7) MIR3|SINE|MIR -33515 NR_036250 100422903 NR_036250 ENSG00000265251 MIR4288 - microRNA 4288 ncRNA 146.75-49 chr2 42255972 42256267 + 0.75 NA intron (NM_001145076, intron 2 of 21) Tigger12c|DNA|TcMar-Tigger -85888 NR_110584 102723824 Hs.639826 NR_110584 LOC102723824 - uncharacterized LOC102723824 ncRNA 243.25-28 chr6 119928356 119928982 + 0.75 NA Intergenic MER21-int|LTR|ERVL -86510 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 147-90 chr5 118606092 118606357 + 0.75 NA intron (NR_104998, intron 1 of 4) intron (NR_104998, intron 1 of 4) 10036 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 186.75-50 chr21 15530117 15530425 + 0.75 NA Intergenic THE1D|LTR|ERVL-MaLR -199663 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 145.75-66 chr21 24104264 24104584 + 0.75 NA Intergenic (AACA)n|Simple_repeat|Simple_repeat 216953 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 219.75-9 chr10 96159072 96159498 + 0.75 NA exon (NM_001330737, exon 7 of 7) exon (NM_001330737, exon 7 of 7) 28663 NM_001330734 9849 Hs.600823 NM_014803 ENSG00000177853 ZNF518A ZNF518 zinc finger protein 518A protein-coding 166-21 chr14 58975250 58975529 + 0.75 NA intron (NR_110547, intron 4 of 5) intron (NR_110547, intron 4 of 5) 147101 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 384-2 chr6 24522693 24523328 + 0.75 NA intron (NM_170740, intron 8 of 10) L1MA5|LINE|L1 28041 NM_001368954 7915 Hs.371723 NM_001080 ENSG00000112294 ALDH5A1 SSADH|SSDH aldehyde dehydrogenase 5 family member A1 protein-coding 181.25-62 chr9 17465602 17466046 + 0.75 NA intron (NM_001365029, intron 21 of 25) intron (NM_001365029, intron 21 of 25) -113242 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 170.25-41 chr3 6507193 6507573 + 0.75 NA Intergenic Intergenic 298066 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 197.75-47 chr4 64394504 64394826 + 0.75 NA intron (NM_001363796, intron 1 of 11) MIR|SINE|MIR 14785 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 378.75 chr12 93599543 93600150 + 0.75 NA Intergenic MSTD|LTR|ERVL-MaLR 27171 NM_001270471 8835 Hs.485572 NM_003877 ENSG00000120833 SOCS2 CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2 suppressor of cytokine signaling 2 protein-coding 233.75-6 chr12 61679551 61680079 + 0.75 NA Intergenic Intergenic 513024 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 245-5 chr14 67584507 67584975 + 0.75 NA intron (NM_020715, intron 26 of 28) L2c|LINE|L2 15527 NM_004569 5283 Hs.553497 NM_004569 ENSG00000100564 PIGH GPI-H phosphatidylinositol glycan anchor biosynthesis class H protein-coding 168.75-14 chr10 118589951 118590390 + 0.75 NA 3' UTR (NM_004248, exon 2 of 2) 3' UTR (NM_004248, exon 2 of 2) 5478 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 180.75-49 chr5 24951243 24951617 + 0.75 NA Intergenic Intergenic -110847 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 156.5-45 chr18 30749852 30750264 + 0.75 NA Intergenic Intergenic 292684 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 198.5-34 chr21 26419500 26419960 + 0.75 NA intron (NR_135515, intron 1 of 3) THE1C-int|LTR|ERVL-MaLR 13787 NR_135515 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 154.75-29 chr16 50042691 50043030 + 0.75 NA Intergenic Intergenic 17654 NM_001281789 255919 Hs.59134 NM_153261 ENSG00000205423 CNEP1R1 C16orf69|NEP1-R1|NEP1R1|TMEM188|TMP125 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein-coding 188.75-16 chr12 79592254 79592766 + 0.75 NA 3' UTR (NM_002583, exon 7 of 7) 3' UTR (NM_002583, exon 7 of 7) 98070 NM_001354732 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 153.25-112 chr8 113042846 113043069 + 0.75 NA intron (NM_001363185, intron 5 of 66) intron (NM_001363185, intron 5 of 66) 334195 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 169-46 chr4 1121596 1121889 + 0.75 NA intron (NR_033768, intron 1 of 3) L1MCa|LINE|L1 1422 NR_033768 100379220 Hs.635208 NR_033768 ENSG00000215367 TMED11P p24a1|p24alpha1 transmembrane p24 trafficking protein 11, pseudogene pseudo 176.5-85 chr8 74073980 74074237 + 0.75 NA Intergenic AluSx1|SINE|Alu 82716 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 147-7 chr1 239116035 239116500 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR -270301 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 231.5-14 chr2 55961581 55962150 + 0.75 NA Intergenic MIR3|SINE|MIR 21211 NR_029630 406999 NR_029630 ENSG00000207548 MIR217 MIRN217|mir-217 microRNA 217 ncRNA 223.75-15 chr2 193150381 193150790 + 0.75 NA Intergenic Intergenic 400740 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 187.75-70 chr7 103808305 103808584 + 0.75 NA intron (NM_005045, intron 3 of 64) (AAAAC)n|Simple_repeat|Simple_repeat 181072 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 155.5-114 chr9 75442330 75442603 + 0.75 NA Intergenic L2c|LINE|L2 353952 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 290.75-7 chr4 129173291 129173939 + 0.75 NA Intergenic Intergenic 77463 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 221.75-21 chr2 57544549 57545001 + 0.75 NA Intergenic Intergenic -362876 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 194.5-24 chr14 87399040 87399482 + 0.75 NA Intergenic LTR37-int|LTR|ERV1 256033 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 149.25-82 chr5 27673887 27674120 + 0.75 NA Intergenic Intergenic 201711 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 205.25-21 chr20 6938775 6939119 + 0.75 NA Intergenic Intergenic 171261 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 150.5-82 chr4 59125349 59125554 + 0.75 NA Intergenic L2c|LINE|L2 111878 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 241.5-2 chr1 216831771 216832386 + 0.75 NA intron (NM_001243513, intron 1 of 7) intron (NM_001243513, intron 1 of 7) -26693 NM_001243514 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 316-2 chr10 64936726 64937454 + 0.75 NA Intergenic L1MA4A|LINE|L1 -12572 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 185.75-89 chr9 36646736 36647069 + 0.75 NA intron (NM_001256691, intron 9 of 15) intron (NM_001256691, intron 9 of 15) 74007 NM_014791 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 159.25-23 chr14 83757452 83757697 + 0.75 NA Intergenic Intergenic 1114942 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 148.5-98 chr8 81284253 81284664 + 0.75 NA intron (NM_001444, intron 3 of 3) intron (NM_001444, intron 3 of 3) 3922 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 269.25-6 chr14 42186130 42186749 + 0.75 NA Intergenic Intergenic 579583 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 167-56 chr3 126833237 126833507 + 0.75 NA intron (NM_032343, intron 4 of 7) MARNA|DNA|TcMar-Mariner 129132 NM_001320610 84303 Hs.518119 NM_032343 ENSG00000159685 CHCHD6 CHCM1|MICOS25|Mic25|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 179-65 chr9 35903068 35903557 + 0.75 NA Intergenic Intergenic -2890 NM_001039792 646962 Hs.208081 NM_001039792 ENSG00000196196 HRCT1 LGLL338|PRO537|UNQ338 histidine rich carboxyl terminus 1 protein-coding 361.75-3 chr2 200034683 200035341 + 0.75 NA Intergenic MER58A|DNA|hAT-Charlie -79521 NR_004862 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 239.5 chr1 19422653 19423142 + 0.75 NA intron (NM_001206540, intron 1 of 9) intron (NM_001206540, intron 1 of 9) 61398 NM_001282162 832 Hs.432760 NM_004930 ENSG00000077549 CAPZB CAPB|CAPPB|CAPZ capping actin protein of muscle Z-line subunit beta protein-coding 167-91 chr8 136467260 136467538 + 0.75 NA Intergenic Intergenic -63399 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 177.25-3 chr1 93413907 93414152 + 0.75 NA Intergenic ERV24_Prim-int|LTR|ERV1 -34089 NM_017737 54874 Hs.134060 NM_017737 ENSG00000137942 FNBP1L C1orf39|TOCA1 formin binding protein 1 like protein-coding 272.25-19 chr8 131053730 131054422 + 0.75 NA Intergenic Intergenic -13167 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 186.75-61 chr4 36795787 36796098 + 0.75 NA Intergenic L1M4a1|LINE|L1 -154042 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 174.75-56 chr6 67553755 67554092 + 0.75 NA Intergenic L1PA7|LINE|L1 -501428 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 219-19 chr5 37053438 37053794 + 0.75 NA intron (NM_015384, intron 42 of 45) MER44A|DNA|TcMar-Tigger 176847 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 200.25-49 chr8 50567212 50567534 + 0.75 NA intron (NR_135795, intron 12 of 18) intron (NR_135795, intron 12 of 18) 403242 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 175.75-2 chr1 235519985 235520360 + 0.75 NA Intergenic Intergenic -15720 NM_152490 148789 Hs.498143 NM_152490 ENSG00000162885 B3GALNT2 B3GalNAc-T2|MDDGA11 beta-1,3-N-acetylgalactosaminyltransferase 2 protein-coding 244-23 chr4 110296822 110297431 + 0.75 NA Intergenic MIRc|SINE|MIR -98511 NM_001130721 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 176.75-30 chr2 16988211 16988542 + 0.75 NA Intergenic Intergenic -322542 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 343.5 chr11 19074329 19074832 + 0.75 NA Intergenic Intergenic -13863 NM_054030 117194 Hs.350566 NM_054030 ENSG00000183695 MRGPRX2 MGRG3|MRGX2 MAS related GPR family member X2 protein-coding 169.75-66 chr6 150268719 150269058 + 0.75 NA Intergenic Intergenic -100124 NM_001318495 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 189-40 chr3 86576075 86576502 + 0.75 NA Intergenic L1MA2|LINE|L1 94345 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 182.5-10 chr11 81255695 81256176 + 0.75 NA Intergenic Intergenic -493132 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 196.75-47 chr6 40644173 40644589 + 0.75 NA Intergenic MLT1L|LTR|ERVL-MaLR -57017 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 165.25-7 chr10 74440514 74440978 + 0.75 NA intron (NM_001369124, intron 6 of 9) intron (NM_001369124, intron 6 of 9) 88578 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 169.5-36 chr17 61886481 61886906 + 0.75 NA intron (NM_001351695, intron 15 of 24) intron (NM_001351695, intron 15 of 24) -23134 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 183.5-32 chr2 137053375 137053662 + 0.75 NA intron (NM_001316349, intron 2 of 27) intron (NM_001316349, intron 2 of 27) 287973 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 154-50 chr2 40663560 40663862 + 0.75 NA Intergenic LTR107_Mam|LTR|LTR -151276 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 159.75-38 chr16 6735319 6735684 + 0.75 NA intron (NM_018723, intron 3 of 15) intron (NM_018723, intron 3 of 15) -38308 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 197-16 chr2 35447701 35448020 + 0.75 NA Intergenic LTR16A|LTR|ERVL -23545 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 247-22 chr7 20526767 20527241 + 0.75 NA Intergenic L1MB8|LINE|L1 -88663 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 242.25-10 chr2 40589158 40589670 + 0.75 NA Intergenic Intergenic -76979 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 183.75-53 chr20 13952901 13953466 + 0.75 NA intron (NR_073206, intron 2 of 20) MER61-int|LTR|ERV1 37431 NR_073206 80343 Hs.590879 NM_025229 ENSG00000101251 SEL1L2 C20orf50|sel-1L2 SEL1L2 adaptor subunit of ERAD E3 ligase protein-coding 175-7 chr10 81366209 81366536 + 0.75 NA Intergenic L1M1|LINE|L1 -508822 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 223.75-5 chr12 53543193 53543789 + 0.75 NA intron (NM_001366563, intron 2 of 2) intron (NM_001366563, intron 2 of 2) 29507 NR_046221 100652999 Hs.633602 NR_046221 ENSG00000257550 LOC100652999 - uncharacterized LOC100652999 ncRNA 301.75-4 chr2 214085723 214086482 + 0.75 NA intron (NR_047660, intron 12 of 14) intron (NR_047660, intron 12 of 14) -324952 NR_159945 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 164.25-56 chr3 34921247 34921614 + 0.75 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 472593 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 192-16 chr13 83772435 83772959 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR 109696 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 203.5-62 chr6 63854350 63854891 + 0.75 NA intron (NM_001292009, intron 36 of 43) L1PA8|LINE|L1 47784 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 157.75-104 chr7 37705139 37705529 + 0.75 NA intron (NM_001329994, intron 3 of 3) Tigger16b|DNA|TcMar-Tigger 21568 NM_001329993 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 202.25-44 chr4 80039079 80039426 + 0.75 NA intron (NM_001286781, intron 7 of 16) intron (NM_001286781, intron 7 of 16) 33977 NM_001286781 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 168.25-49 chr3 182559672 182560094 + 0.75 NA Intergenic MLT1B|LTR|ERVL-MaLR -52759 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 299-6 chr7 51970349 51971019 + 0.75 NA Intergenic Intergenic -577428 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 218.25-16 chr17 79044358 79044788 + 0.75 NA intron (NR_049769, intron 2 of 3) intron (NR_049769, intron 2 of 3) 10274 NM_198593 114897 Hs.201398 NM_030968 ENSG00000173918 C1QTNF1 CTRP1|GIP|ZSIG37 C1q and TNF related 1 protein-coding 168.75-15 chr11 14777550 14777890 + 0.75 NA intron (NM_001363570, intron 3 of 16) L1PA5|LINE|L1 114485 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 210.5-43 chr7 116810265 116810842 + 0.75 NA Intergenic Intergenic -52034 NM_006136 830 Hs.446123 NM_006136 ENSG00000198898 CAPZA2 CAPPA2|CAPZ capping actin protein of muscle Z-line subunit alpha 2 protein-coding 188.25-25 chr19 36612067 36612393 + 0.75 NA intron (NM_001256838, intron 4 of 4) L1ME2|LINE|L1 6917 NM_032825 84911 Hs.631591 NM_032825 ENSG00000161298 ZNF382 KS1 zinc finger protein 382 protein-coding 220.75-25 chr3 66520729 66521380 + 0.75 NA Intergenic Intergenic -20633 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 176.75-19 chr12 118461577 118462017 + 0.75 NA Intergenic Intergenic 85242 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 171.5-31 chr14 67122164 67122606 + 0.75 NA intron (NM_001024218, intron 16 of 21) intron (NM_001024218, intron 16 of 21) -67055 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 280-10 chr6 56457683 56458304 + 0.75 NA TTS (NM_015548) TTS (NM_015548) -63865 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 157.25-84 chr6 126604830 126605250 + 0.75 NA Intergenic Intergenic 120409 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 203.75-34 chr4 176427543 176428083 + 0.75 NA Intergenic AluSz|SINE|Alu 107847 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 307-4 chr2 183715618 183716222 + 0.75 NA Intergenic Intergenic 591477 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 154.5-39 chr18 5021937 5022200 + 0.75 NA Intergenic LTR43|LTR|ERV1 -59114 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 232.25-26 chr3 118451272 118451927 + 0.75 NA Intergenic L1PA11|LINE|L1 -190169 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 158.75-89 chr9 31793909 31794283 + 0.75 NA Intergenic L1MC4|LINE|L1 -412606 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 232.25-24 chr3 54381237 54381705 + 0.75 NA intron (NM_018398, intron 3 of 37) intron (NM_018398, intron 3 of 37) 258386 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 173.75-5 chr1 166643287 166643715 + 0.75 NA Intergenic L1MA4A|LINE|L1 39585 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 164.75-15 chr11 22686003 22686320 + 0.75 NA intron (NM_005256, intron 2 of 6) intron (NM_005256, intron 2 of 6) 11387 NM_005256 2620 Hs.711297 NM_005256 ENSG00000148935 GAS2 GAS-2 growth arrest specific 2 protein-coding 210.75-10 chr11 99688334 99688733 + 0.75 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 132388 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 245.5-10 chr10 123412201 123412797 + 0.75 NA Intergenic Intergenic -253856 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 163.5-123 chrX 45570173 45570541 + 0.75 NA Intergenic L2a|LINE|L2 64969 NR_104645 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 205.5-9 chr11 84594892 84595427 + 0.75 NA intron (NM_001351274, intron 5 of 26) AluJb|SINE|Alu 125783 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 182.25-34 chr22 25089594 25089953 + 0.75 NA intron (NM_001145206, intron 4 of 10) L1ME3G|LINE|L1 22919 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 241.5-30 chr7 105284606 105285169 + 0.75 NA intron (NM_001350746, intron 2 of 14) intron (NM_001350746, intron 2 of 14) 13892 NM_001278273 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 177.75-30 chr2 78829784 78830170 + 0.75 NA Intergenic Intergenic -195725 NM_001008387 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 195.25-67 chr9 133424566 133424899 + 0.75 NA intron (NM_139027, intron 3 of 28).2 LTR78B|LTR|ERV1 2365 NM_139027 11093 Hs.131433 NM_139025 ENSG00000160323 ADAMTS13 ADAM-TS13|ADAMTS-13|C9orf8|VWFCP|vWF-CP ADAM metallopeptidase with thrombospondin type 1 motif 13 protein-coding 168.75-53 chr2 146232936 146233330 + 0.75 NA Intergenic Intergenic -353924 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 149.25-80 chr4 168148425 168148674 + 0.75 NA intron (NM_007193, intron 3 of 11) HERVL40-int|LTR|ERVL 56012 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 158.25-15 chr10 73519493 73519938 + 0.75 NA intron (NR_146997, intron 17 of 21) intron (NR_146997, intron 17 of 21) -23691 NM_001289968 5532 Hs.500067 NM_021132 ENSG00000107758 PPP3CB CALNA2|CALNB|CNA2|PP2Bbeta protein phosphatase 3 catalytic subunit beta protein-coding 199.75-8 chr10 86904882 86905325 + 0.75 NA intron (NM_004329, intron 7 of 12) intron (NM_004329, intron 7 of 12) -50656 NM_001330120 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 232.25-10 chr12 12496220 12496817 + 0.75 NA intron (NM_030640, intron 4 of 6).2 intron (NM_030640, intron 4 of 6).2 66345 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 146.25-64 chr3 122860599 122860838 + 0.75 NA intron (NM_032839, intron 7 of 8) intron (NM_032839, intron 7 of 8) -25795 NR_024618 100129550 Hs.61558 NR_024618 ENSG00000273033 LINC02035 - long intergenic non-protein coding RNA 2035 ncRNA 201-3 chr1 53706650 53706996 + 0.75 NA intron (NM_001367484, intron 2 of 10) MER5A|DNA|hAT-Charlie 27381 NM_147193 148979 Hs.306691 NM_147193 ENSG00000174332 GLIS1 - GLIS family zinc finger 1 protein-coding 192.75-7 chr10 66208346 66208764 + 0.75 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 637130 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 217.25-24 chr2 114742260 114742636 + 0.75 NA intron (NM_001321910, intron 2 of 26) Ricksha_0|DNA|MULE-MuDR 91100 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 183.75-31 chr15 51988034 51988310 + 0.75 NA Intergenic Intergenic -16371 NM_001286430 123169 Hs.567662 NM_138792 ENSG00000166477 LEO1 RDL LEO1 homolog, Paf1/RNA polymerase II complex component protein-coding 231.25-19 chr15 97772472 97772882 + 0.75 NA intron (NR_024172, intron 1 of 2) L1M1|LINE|L1 101752 NR_024173 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 197-47 chr8 130694486 130695081 + 0.75 NA Intergenic Kanga1c|DNA|TcMar-Tc2 -251109 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 189-6 chr10 13016232 13016495 + 0.75 NA intron (NM_001282658, intron 5 of 6) intron (NM_001282658, intron 5 of 6) -14650 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 221.75-30 chr5 101647891 101648353 + 0.75 NA Intergenic Intergenic 648162 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 153.75-17 chr14 69804809 69805214 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -6749 NR_149012 100506358 NR_149012 LOC100506358 - uncharacterized LOC100506358 ncRNA 195.75-29 chr17 64209975 64210496 + 0.75 NA intron (NM_018469, intron 2 of 11) intron (NM_018469, intron 2 of 11) 20499 NM_001288733 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 169-27 chr18 8551504 8551857 + 0.75 NA Intergenic AluJb|SINE|Alu -57765 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 218 chr1 59385480 59385939 + 0.75 NA intron (NM_001350794, intron 5 of 14) L4_A_Mam|LINE|RTE-X 75677 NM_001350792 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 202-2 chr10 127773766 127774161 + 0.75 NA Intergenic Intergenic 36778 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 152-62 chr4 76965667 76966075 + 0.75 NA intron (NM_018243, intron 1 of 9) intron (NM_018243, intron 1 of 9) 16119 NM_018243 55752 Hs.128199 NM_018243 ENSG00000138758 SEPTIN11 SEPT11 septin 11 protein-coding 256-4 chr12 16614420 16615024 + 0.75 NA Intergenic Intergenic -6508 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 271.75-3 chr10 70653845 70654536 + 0.75 NA Intergenic AluSz|SINE|Alu -18316 NM_139155 140766 Hs.352156 NM_080722 ENSG00000138316 ADAMTS14 - ADAM metallopeptidase with thrombospondin type 1 motif 14 protein-coding 153.75-92 chr8 138396721 138397126 + 0.75 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 100338 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 158.25-88 chr5 84759505 84759837 + 0.75 NA Intergenic Intergenic -374791 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 195.5-43 chr3 124173799 124174092 + 0.75 NA intron (NM_001024660, intron 1 of 59) intron (NM_001024660, intron 1 of 59) 41016 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 248-12 chr8 29895553 29895992 + 0.75 NA Intergenic Intergenic -25741 NR_024473 286135 Hs.376840 NR_024473 ENSG00000253279 LINC02209 FAM183CP long intergenic non-protein coding RNA 2209 ncRNA 182.75-21 chr14 41980079 41980377 + 0.75 NA Intergenic Intergenic 373372 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 216.5-44 chr8 82127799 82128336 + 0.75 NA Intergenic MIR|SINE|MIR -285781 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 237.25-16 chr5 12670198 12670617 + 0.75 NA intron (NR_033383, intron 2 of 3) intron (NR_033383, intron 2 of 3) 2548 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 188.75-29 chr2 28874957 28875538 + 0.75 NA Intergenic Intergenic -4938 NM_017910 55006 Hs.468026 NM_017910 ENSG00000171103 TRMT61B - tRNA methyltransferase 61B protein-coding 255.75-13 chr5 52667458 52668040 + 0.75 NA Intergenic Intergenic -120167 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 189.25-43 chr6 40469937 40470443 + 0.75 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 91853 NR_160959 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 218.75-22 chr6 131759377 131759863 + 0.75 NA Intergenic L1MA9|LINE|L1 -32552 NR_039610 100616455 NR_039610 ENSG00000266807 MIR548H5 - microRNA 548h-5 ncRNA 217.25-23 chr2 107345024 107345555 + 0.75 NA intron (NR_049853, intron 1 of 3) intron (NR_049853, intron 1 of 3) 4236 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 173.5-48 chr3 3461630 3461915 + 0.75 NA Intergenic MER47B|DNA|TcMar-Tigger -282055 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 164-42 chr20 55622379 55622791 + 0.75 NA Intergenic L1ME3A|LINE|L1 -195388 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 175.25-61 chr6 126138874 126139406 + 0.75 NA Intergenic Intergenic 152600 NR_146804 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 318-4 chr9 74251845 74252637 + 0.75 NA Intergenic Intergenic -119290 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 211.75-2 chr1 47058699 47059308 + 0.75 NA Intergenic Intergenic -8228 NM_178134 199974 Hs.176588 NM_178134 ENSG00000186160 CYP4Z1 CYP4A20 cytochrome P450 family 4 subfamily Z member 1 protein-coding 155.5-90 chr6 64154481 64154784 + 0.75 NA intron (NM_001292009, intron 31 of 43) intron (NM_001292009, intron 31 of 43) 347796 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 169-47 chr4 99358996 99359379 + 0.75 NA Intergenic THE1D|LTR|ERVL-MaLR -6441 NR_133005 126 Hs.654537 NM_000669 ENSG00000248144 ADH1C ADH3 alcohol dehydrogenase 1C (class I), gamma polypeptide protein-coding 183.25-29 chr16 54605344 54605724 + 0.75 NA Intergenic L1MD2|LINE|L1 -234835 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 186.5-24 chr2 21007584 21007854 + 0.75 NA exon (NM_000384, exon 26 of 29) exon (NM_000384, exon 26 of 29) 36354 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 250.75-28 chr6 133419077 133419480 + 0.75 NA intron (NM_172103, intron 3 of 18) intron (NM_172103, intron 3 of 18) 177779 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 167-77 chr7 28471689 28471996 + 0.75 NA intron (NM_004904, intron 1 of 10) intron (NM_004904, intron 1 of 10) 36227 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 250.75-24 chr5 112071776 112072139 + 0.75 NA Intergenic Intergenic -88569 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 236.25-27 chr6 11872496 11872843 + 0.75 NA Intergenic Intergenic -93622 NM_001143948 84830 Hs.126409 NM_032744 ENSG00000111863 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen dependent TFPI regulating protein protein-coding 192.75-50 chr4 160962637 160962987 + 0.75 NA Intergenic Intergenic -1059921 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 268-7 chr14 42604334 42604940 + 0.75 NA Intergenic L1M6|LINE|L1 997781 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 189.5-37 chr21 15543382 15543761 + 0.75 NA Intergenic L1M1|LINE|L1 -186363 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 156.75-49 chr2 50958200 50958615 + 0.75 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 73725 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 268.25-15 chr22 45852807 45853462 + 0.75 NA Intergenic L1MEg|LINE|L1 92610 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 183.75-99 chr9 23474831 23475202 + 0.75 NA Intergenic MIR|SINE|MIR 197383 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 196-6 chr10 35266599 35266940 + 0.75 NA intron (NM_181698, intron 3 of 11) intron (NM_181698, intron 3 of 11) 19744 NM_181698 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 328.75-4 chr5 15880382 15881182 + 0.75 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -54400 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 202.25-22 chr15 70695727 70696369 + 0.75 NA intron (NM_018003, intron 2 of 18) intron (NM_018003, intron 2 of 18) 6234 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 221.5-46 chr7 5691990 5692529 + 0.75 NA intron (NM_207111, intron 13 of 16) intron (NM_207111, intron 13 of 16) -11798 NR_046834 100874342 Hs.665728 NR_046834 ENSG00000237738 RNF216-IT1 - RNF216 intronic transcript 1 ncRNA 240.75-24 chr7 118579458 118580067 + 0.75 NA Intergenic Intergenic 355058 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 183.25-75 chr8 88546247 88546685 + 0.75 NA Intergenic Intergenic -218983 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 153-56 chr3 148860432 148860787 + 0.75 NA TTS (NM_001871) TTS (NM_001871) -4687 NM_001870 1359 Hs.646 NM_001870 ENSG00000163751 CPA3 MC-CPA carboxypeptidase A3 protein-coding 203-41 chr7 143509373 143509736 + 0.75 NA intron (NR_033897, intron 3 of 4) L1ME4b|LINE|L1 2457 NR_145518 392133 NM_001348289 ENSG00000176510 OR10AC1 OR10AC1P olfactory receptor family 10 subfamily AC member 1 (gene/pseudogene) protein-coding 216.25-34 chr9 28139417 28139874 + 0.75 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -565779 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 157.75-70 chr3 147506638 147507070 + 0.75 NA intron (NR_121655, intron 1 of 2) Tigger3a|DNA|TcMar-Tigger 85527 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 239.75-7 chr10 85814478 85815095 + 0.75 NA intron (NM_017551, intron 8 of 15) L1MEf|LINE|L1 237055 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 171.5-37 chr18 9570333 9570687 + 0.75 NA exon (NM_005134, exon 11 of 20) exon (NM_005134, exon 11 of 20) 44049 NM_005134 9989 Hs.743236 NM_005134 ENSG00000154845 PPP4R1 MEG1|PP4(Rmeg)|PP4R1 protein phosphatase 4 regulatory subunit 1 protein-coding 265-8 chr3 89175671 89176196 + 0.75 NA intron (NM_182644, intron 2 of 6) (TGT)n|Simple_repeat|Simple_repeat 68312 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 172-3 chr1 56862141 56862452 + 0.75 NA intron (NM_000562, intron 1 of 10) MIRb|SINE|MIR 7526 NM_000562 731 Hs.93210 NM_000562 ENSG00000157131 C8A - complement C8 alpha chain protein-coding 204.25-34 chr4 44088460 44088756 + 0.75 NA Intergenic L2a|LINE|L2 71546 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 175.5-45 chr2 64160778 64161055 + 0.75 NA Intergenic Intergenic -16496 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 181.5-67 chr7 50487592 50488026 + 0.75 NA intron (NM_001242888, intron 7 of 12) MER4B-int|LTR|ERV1 -37403 NM_001287493 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 167.5-43 chr2 114364961 114365417 + 0.75 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -77452 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 224.75-8 chr11 36811099 36811558 + 0.75 NA Intergenic Intergenic -213049 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 312.5-10 chr8 121090229 121090987 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -278562 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 168-31 chr2 14894443 14894802 + 0.75 NA Intergenic HAL1|LINE|L1 261905 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 200.75-53 chr8 29275575 29275887 + 0.75 NA Intergenic Intergenic -12661 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 207.75-2 chr1 82468325 82468709 + 0.75 NA Intergenic Intergenic -434666 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 164.25-84 chr8 75217816 75218186 + 0.75 NA Intergenic Intergenic 60480 NR_103850 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 200.5-11 chr11 44136401 44136899 + 0.75 NA intron (NM_207122, intron 7 of 13) intron (NM_207122, intron 7 of 13) 40453 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 161.5-92 chr9 32034729 32035199 + 0.75 NA Intergenic Intergenic -349639 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 154.25-92 chr9 104349628 104349942 + 0.75 NA Intergenic LTR78|LTR|ERV1 79556 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 155-14 chr11 39612328 39612701 + 0.75 NA Intergenic Intergenic 680616 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 157.5-95 chr7 12554011 12554442 + 0.75 NA Intergenic Intergenic -16494 NM_001112706 85477 Hs.633359 NM_033128 ENSG00000006747 SCIN - scinderin protein-coding 147.75-48 chr18 26478244 26478585 + 0.75 NA intron (NM_001258221, intron 2 of 4) intron (NM_001258221, intron 2 of 4) 55419 NR_110762 100506787 Hs.734746 NR_110762 LINC01543 - long intergenic non-protein coding RNA 1543 ncRNA 185.5-10 chr10 19251312 19251583 + 0.75 NA intron (NM_001142308, intron 18 of 39) LTR40A1|LTR|ERVL 202646 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 182-57 chr7 112122405 112122673 + 0.75 NA intron (NM_001363540, intron 1 of 52) AluJr|SINE|Alu 83860 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 180.25-3 chr1 108878353 108878696 + 0.75 NA intron (NM_001321038, intron 1 of 14) intron (NM_001321038, intron 1 of 14) 1539 NM_001321038 29899 Hs.584901 NM_013296 ENSG00000121957 GPSM2 CMCS|DFNB82|LGN|PINS G protein signaling modulator 2 protein-coding 155-94 chr7 10461501 10461770 + 0.75 NA intron (NR_147499, intron 2 of 2) Tigger3|DNA|TcMar-Tigger -241041 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 183.75-47 chr2 124018533 124018848 + 0.75 NA intron (NR_147976, intron 1 of 2) intron (NR_147976, intron 1 of 2) 6484 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 181.5-43 chr2 200289437 200289868 + 0.75 NA Intergenic Intergenic -16227 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 163.25-21 chr11 105650889 105651277 + 0.75 NA intron (NR_046356, intron 2 of 16) intron (NR_046356, intron 2 of 16) 40377 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 159-52 chr3 47683779 47684175 + 0.75 NA intron (NM_003074, intron 14 of 27) AluYc|SINE|Alu -22283 NR_145791 109623484 NR_145791 SNORD146 - small nucleolar RNA, C/D box 146 snoRNA 192-32 chr2 182927220 182927557 + 0.75 NA intron (NM_013436, intron 29 of 30) intron (NM_013436, intron 29 of 30) -60751 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 262.75-2 chr1 155822860 155823332 + 0.75 NA intron (NM_032292, intron 3 of 20) intron (NM_032292, intron 3 of 20) 34118 NM_001282858 54856 Hs.656361 NM_032292 ENSG00000116580 GON4L GON-4|GON4|YARP gon-4 like protein-coding 166.75-45 chr20 8697805 8698121 + 0.75 NA intron (NM_182734, intron 11 of 32) intron (NM_182734, intron 11 of 32) -133222 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 161.75-70 chr4 167713493 167713786 + 0.75 NA Intergenic Intergenic -378898 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 184.25-9 chr10 81453023 81453302 + 0.75 NA Intergenic L1MB7|LINE|L1 -422032 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 181.25-7 chr10 69304888 69305215 + 0.75 NA intron (NM_033500, intron 5 of 21) MLT1C|LTR|ERVL-MaLR -10803 NM_033496 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 150.75-13 chr11 41014352 41014608 + 0.75 NA intron (NM_001258419, intron 1 of 6) (TT)n|Simple_repeat|Simple_repeat 445156 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 235.75-16 chr17 29733249 29733577 + 0.75 NA intron (NM_033389, intron 2 of 14) intron (NM_033389, intron 2 of 14) 28019 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 186-29 chr20 33562550 33563020 + 0.75 NA intron (NM_001039709, intron 1 of 10) intron (NM_001039709, intron 1 of 10) 420 NM_001039709 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 partner transcriptional co-repressor 2 protein-coding 209.75-14 chr14 31398375 31398834 + 0.75 NA intron (NM_015473, intron 4 of 35) intron (NM_015473, intron 4 of 35) 21946 NM_015473 25938 Hs.744979 NM_015473 ENSG00000129493 HEATR5A C14orf125 HEAT repeat containing 5A protein-coding 152.5-66 chr22 34573900 34574121 + 0.75 NA Intergenic L1PB1|LINE|L1 423906 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 214.5-40 chr5 92309722 92310304 + 0.75 NA Intergenic Intergenic -926696 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 249.5-21 chr4 44216376 44216990 + 0.75 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 199621 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 156.5-26 chr11 83281156 83281417 + 0.75 NA intron (NM_001286116, intron 1 of 8) intron (NM_001286116, intron 1 of 8) 5121 NM_021825 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 212.5-15 chr15 72271631 72272095 + 0.75 NA intron (NR_136599, intron 1 of 22) intron (NR_136599, intron 1 of 22) 691 NR_136594 56965 Hs.270244 NM_020213 ENSG00000137817 PARP6 ARTD17|PARP-6-B1|PARP-6-C|pART17 poly(ADP-ribose) polymerase family member 6 protein-coding 262-3 chr13 107474415 107475078 + 0.75 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 56502 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 152.75 chr1 10241408 10241663 + 0.75 NA intron (NM_001365953, intron 2 of 20) intron (NM_001365953, intron 2 of 20) 10771 NM_001365953 23095 Hs.97858 NM_015074 ENSG00000054523 KIF1B CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1 kinesin family member 1B protein-coding 168.75-12 chr10 62331783 62332063 + 0.75 NA Intergenic L1MB5|LINE|L1 -42234 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 222.5-27 chr2 198942193 198942536 + 0.75 NA Intergenic Intergenic 515575 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 170.5-46 chr3 12318754 12319016 + 0.75 NA intron (NM_001330615, intron 1 of 5) intron (NM_001330615, intron 1 of 5) 6505 NM_001330615 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 147-40 chr18 74547255 74547639 + 0.75 NA intron (NM_032649, intron 1 of 11) intron (NM_032649, intron 1 of 11) 12947 NM_032649 84735 Hs.400613 NM_032649 ENSG00000150656 CNDP1 CN1|CPGL2|HsT2308 carnosine dipeptidase 1 protein-coding 309.25-8 chr8 76204353 76204925 + 0.75 NA Intergenic Intergenic -202015 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 175-56 chr9 75498409 75498810 + 0.75 NA Intergenic Intergenic -392035 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 185-22 chr14 78399943 78400271 + 0.75 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -3612 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 145.75-135 chrX 53435103 53435391 + 0.75 NA promoter-TSS (NM_001037811) promoter-TSS (NM_001037811) -871 NM_001037811 3028 Hs.171280 NM_004493 ENSG00000072506 HSD17B10 17b-HSD10|ABAD|CAMR|DUPXp11.22|ERAB|HADH2|HCD2|HSD10MD|MHBD|MRPP2|MRX17|MRX31|MRXS10|SCHAD|SDR5C1 hydroxysteroid 17-beta dehydrogenase 10 protein-coding 156.25-88 chr7 52614577 52614868 + 0.75 NA Intergenic Intergenic -420911 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 199.25-37 chr20 19561746 19562034 + 0.75 NA intron (NM_020689, intron 3 of 16) intron (NM_020689, intron 3 of 16) -277294 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 196.5-4 chr1 217470399 217470830 + 0.75 NA intron (NM_018040, intron 8 of 9) intron (NM_018040, intron 8 of 9) 160476 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 282.5-4 chr11 44217081 44217737 + 0.75 NA intron (NM_207122, intron 10 of 13) intron (NM_207122, intron 10 of 13) 92730 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 196.75-26 chr2 101705070 101705561 + 0.75 NA intron (NM_145686, intron 2 of 30) intron (NM_145686, intron 2 of 30) 7608 NM_145687 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 161-9 chr1 248055170 248055551 + 0.75 NA intron (NM_001304535, intron 1 of 1) L1PA10|LINE|L1 -5322 NM_001004687 391192 Hs.690412 NM_001004687 ENSG00000198128 OR2L3 - olfactory receptor family 2 subfamily L member 3 protein-coding 293.25-3 chr16 55483620 55484171 + 0.75 NA intron (NM_001127891, intron 2 of 12) (TACACA)n|Simple_repeat|Simple_repeat 2338 NM_001127891 4313 Hs.513617 NM_004530 ENSG00000087245 MMP2 CLG4|CLG4A|MMP-2|MMP-II|MONA|TBE-1 matrix metallopeptidase 2 protein-coding 156.5-73 chr4 44877228 44877601 + 0.75 NA Intergenic Intergenic -150780 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 180-32 chr2 68550857 68551267 + 0.75 NA intron (NM_173545, intron 8 of 9) L1MEg|LINE|L1 83477 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 389.5-2 chr5 19544771 19545623 + 0.75 NA intron (NM_001349559, intron 8 of 12) L2b|LINE|L2 341075 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 182-17 chr14 47762090 47762404 + 0.75 NA Intergenic Intergenic -1143 NR_037503 100500919 NR_037503 ENSG00000263945 MIR548Y - microRNA 548y ncRNA 289.75-10 chr17 71160797 71161222 + 0.75 NA intron (NR_104152, intron 2 of 3) intron (NR_104152, intron 2 of 3) 41170 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 157.75-62 chr21 28575834 28576210 + 0.75 NA Intergenic L1ME2|LINE|L1 36704 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 200.75-37 chr4 80962182 80962650 + 0.75 NA intron (NM_152770, intron 5 of 5) LTR37A|LTR|ERV1 -68292 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 290-5 chr4 181822512 181822952 + 0.75 NA intron (NR_147188, intron 1 of 2) X9_LINE|LINE|L1 7241 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 162.75-19 chr12 33313406 33313697 + 0.75 NA Intergenic MER39|LTR|ERV1 126268 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 155.25-6 chr1 196003257 196003542 + 0.75 NA Intergenic Intergenic 85316 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 152.25-69 chr4 8116510 8116811 + 0.75 NA intron (NM_001130084, intron 1 of 19) Charlie23a|DNA|hAT-Charlie 42153 NM_001130086 84448 Hs.233404 NM_032432 ENSG00000163995 ABLIM2 - actin binding LIM protein family member 2 protein-coding 181-40 chr6 56223029 56223375 + 0.75 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 24378 NR_134850 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 297.75-20 chr7 132587680 132588323 + 0.75 NA intron (NM_181775, intron 2 of 4) intron (NM_181775, intron 2 of 4) -11437 NM_020911 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 230.75-15 chr17 27772446 27772782 + 0.75 NA intron (NM_000625, intron 13 of 26) intron (NM_000625, intron 13 of 26) 27915 NM_000625 4843 Hs.709191 NM_000625 ENSG00000007171 NOS2 HEP-NOS|INOS|NOS|NOS2A nitric oxide synthase 2 protein-coding 257.75-20 chr5 128377935 128378506 + 0.75 NA intron (NM_001999, intron 12 of 64) intron (NM_001999, intron 12 of 64) 160025 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 314-6 chr4 79893738 79894275 + 0.75 NA Intergenic L1MD1|LINE|L1 66535 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 209.75-9 chr11 113871450 113871964 + 0.75 NA intron (NM_020886, intron 1 of 24) intron (NM_020886, intron 1 of 24) 3865 NM_001346271 57646 Hs.503891 NM_020886 ENSG00000048028 USP28 - ubiquitin specific peptidase 28 protein-coding 208-12 chr15 59230384 59230724 + 0.75 NA intron (NM_004998, intron 6 of 27) intron (NM_004998, intron 6 of 27) 23711 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 205-48 chr8 104906107 104906552 + 0.75 NA Intergenic L1MD|LINE|L1 -317305 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 230.5-26 chr5 78224864 78225490 + 0.75 NA intron (NM_003664, intron 6 of 26) intron (NM_003664, intron 6 of 26) 69521 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 195.5-62 chr6 132863164 132863711 + 0.75 NA Intergenic Intergenic 46218 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 174.25-32 chr2 126811748 126812048 + 0.75 NA Intergenic MER31A|LTR|ERV1 -86992 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 383.75 chr11 16460104 16461110 + 0.75 NA intron (NM_001367872, intron 3 of 16) intron (NM_001367872, intron 3 of 16) 15781 NM_033326 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 154-86 chr5 89515220 89515512 + 0.75 NA Intergenic Intergenic 501354 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 286.75-11 chr6 46759846 46760502 + 0.75 NA TTS (NM_001162435) TTS (NM_001162435) 13257 NM_001162435 100287718 Hs.736491 NM_001162435 ENSG00000230062 ANKRD66 - ankyrin repeat domain 66 protein-coding 209.25-30 chr3 110361055 110361516 + 0.75 NA Intergenic Intergenic 708674 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 233.25-27 chr6 72381758 72382391 + 0.75 NA intron (NM_001168411, intron 1 of 5) intron (NM_001168411, intron 1 of 5) 15328 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 177.25-60 chr5 67496256 67496650 + 0.75 NA Intergenic Intergenic 150336 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 188.75-13 chr11 114418205 114418570 + 0.75 NA Intergenic L1MA7|LINE|L1 17721 NM_001286048 10179 Hs.7527 NM_016090 ENSG00000076053 RBM7 - RNA binding motif protein 7 protein-coding 173.75-53 chr4 168323704 168323983 + 0.75 NA Intergenic LTR53-int|LTR|ERVL -5091 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 183-8 chr10 66976734 66977081 + 0.75 NA intron (NM_178011, intron 2 of 2) intron (NM_178011, intron 2 of 2) 35246 NR_111911 101928961 Hs.687014 NR_111911 LOC101928961 - uncharacterized LOC101928961 ncRNA 173.5-29 chr16 76495352 76495773 + 0.75 NA intron (NR_136213, intron 14 of 23) intron (NR_136213, intron 14 of 23) -139436 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 170-21 chr15 79162689 79163000 + 0.75 NA Intergenic L1ME4b|LINE|L1 -46944 NR_029705 406960 NR_029705 ENSG00000207695 MIR184 EDICT|MIRN184|miR-184 microRNA 184 ncRNA 212-40 chr8 53754254 53754625 + 0.75 NA intron (NM_213620, intron 12 of 13) HERVL40-int|LTR|ERVL 88603 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 238.5-17 chr19 36534966 36535393 + 0.75 NA Intergenic LTR78|LTR|ERV1 -6908 NM_001166038 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 183.25-7 chr10 57503414 57503785 + 0.75 NA Intergenic Intergenic -199040 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 215.75-27 chr5 31479740 31480181 + 0.75 NA intron (NM_013235, intron 15 of 34) L1M5|LINE|L1 52133 NM_013235 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 221.75-11 chr12 82732817 82733279 + 0.75 NA intron (NM_001320321, intron 1 of 10) intron (NM_001320321, intron 1 of 10) 45893 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 148.25-20 chr12 21343248 21343698 + 0.75 NA intron (NM_134431, intron 2 of 15) intron (NM_134431, intron 2 of 15) -8556 NM_021094 6579 Hs.46440 NM_005075 ENSG00000084453 SLCO1A2 OATP|OATP-A|OATP1A2|SLC21A3 solute carrier organic anion transporter family member 1A2 protein-coding 153-85 chr7 90670151 90670488 + 0.75 NA intron (NM_001287135, intron 2 of 14) MIR3|SINE|MIR -39079 NM_012395 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 228.75 chr10 30551753 30552144 + 0.75 NA Intergenic (ATGTATAC)n|Simple_repeat|Simple_repeat 77805 NM_183058 119180 Hs.522610 NM_183058 ENSG00000151033 LYZL2 LYZD2 lysozyme like 2 protein-coding 220.25-3 chr1 192107457 192107971 + 0.75 NA Intergenic Intergenic -50748 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 165.5-7 chr1 111816014 111816293 + 0.75 NA intron (NM_172198, intron 2 of 6) MIRb|SINE|MIR 40752 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 193-50 chr7 33057910 33058299 + 0.75 NA intron (NM_001002009, intron 1 of 9) intron (NM_001002009, intron 1 of 9) 4672 NM_001002010 51251 Hs.487933 NM_016489 ENSG00000122643 NT5C3A NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36 5'-nucleotidase, cytosolic IIIA protein-coding 199.75-59 chr8 120911896 120912324 + 0.75 NA Intergenic LTR79|LTR|ERVL -100064 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 263.25-2 chr10 84505137 84505647 + 0.75 NA intron (NM_001351290, intron 10 of 11) L1ME4a|LINE|L1 80223 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 187.5-59 chr6 45872384 45872935 + 0.75 NA Intergenic Intergenic 64938 NR_045674 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 241.25-21 chr5 55340651 55341342 + 0.75 NA intron (NM_015360, intron 6 of 26) intron (NM_015360, intron 6 of 26) 33007 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 224.25-23 chr21 32197975 32198368 + 0.75 NA Intergenic Intergenic 80878 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 231.5-34 chr7 92813248 92813657 + 0.75 NA intron (NM_001259, intron 2 of 7) intron (NM_001259, intron 2 of 7) 20507 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 256.5-2 chr11 106819078 106819513 + 0.75 NA intron (NM_001256424, intron 4 of 8) Tigger1|DNA|TcMar-Tigger 199181 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 200.5-51 chr5 175054172 175054612 + 0.75 NA Intergenic Intergenic -58661 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 250.75-16 chr2 46930584 46931094 + 0.75 NA intron (NM_001288953, intron 2 of 20) L1MEg|LINE|L1 -10385 NM_001288955 57217 Hs.370603 NM_020458 ENSG00000068724 TTC7A GIDID|MINAT|TTC7 tetratricopeptide repeat domain 7A protein-coding 191.75-17 chr11 115868951 115869325 + 0.75 NA Intergenic L1MA4A|LINE|L1 -108938 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 209.25-22 chr2 36725862 36726502 + 0.75 NA intron (NM_001177969, intron 2 of 14) L1ME4a|LINE|L1 29475 NM_001328661 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 199.25-17 chr14 69569819 69570278 + 0.75 NA 3' UTR (NM_001271507, exon 2 of 2) 3' UTR (NM_001271507, exon 2 of 2) 4823 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 259.5-16 chr6 38979353 38980038 + 0.75 NA intron (NM_001371, intron 84 of 91) intron (NM_001371, intron 84 of 91) -26588 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 155.5-56 chr2 239414577 239414998 + 0.75 NA Intergenic L1ME1|LINE|L1 13039 NR_135577 101928111 Hs.534680 NR_135575 ENSG00000222020 HDAC4-AS1 - HDAC4 antisense RNA 1 ncRNA 233.75-13 chr20 10600354 10600826 + 0.75 NA intron (NM_001009608, intron 5 of 7) intron (NM_001009608, intron 5 of 7) 49105 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 244.75-9 chr14 97092270 97092728 + 0.75 NA Intergenic Intergenic -62358 NR_146554 105370648 NR_146554 ENSG00000259110 LINC02304 - long intergenic non-protein coding RNA 2304 ncRNA 228.25-25 chr5 9032253 9032668 + 0.75 NA Intergenic Intergenic 21435 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 244.25-23 chr8 85112729 85113303 + 0.75 NA exon (NM_001349636, exon 3 of 18) exon (NM_001349636, exon 3 of 18) 5778 NM_001349638 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 218.5-10 chr14 65263007 65263316 + 0.75 NA Intergenic MIR|SINE|MIR -40814 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 159.75-85 chr6 46507277 46507639 + 0.75 NA intron (NR_125837, intron 1 of 2) intron (NR_125837, intron 1 of 2) -15391 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 155.75-63 chr21 18427613 18427917 + 0.75 NA Intergenic Intergenic -23980 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 183.75-28 chr14 61389903 61390182 + 0.75 NA intron (NM_006255, intron 1 of 13) L3|LINE|CR1 68599 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 162.75-37 chr2 88125848 88126182 + 0.75 NA intron (NM_001443, intron 2 of 3) intron (NM_001443, intron 2 of 3) 2047 NM_001443 2168 Hs.380135 NM_001443 ENSG00000163586 FABP1 FABPL|L-FABP fatty acid binding protein 1 protein-coding 270.75-10 chr15 67945381 67945885 + 0.75 NA Intergenic Intergenic -105588 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 173.5-77 chr7 11603972 11604398 + 0.75 NA intron (NM_015204, intron 2 of 26) MIR|SINE|MIR 228013 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 171.25-20 chr14 45017984 45018307 + 0.75 NA intron (NM_001308120, intron 7 of 19) intron (NM_001308120, intron 7 of 19) 55955 NM_015091 23116 Hs.371078 NM_015091 ENSG00000198718 TOGARAM1 FAM179B|KIAA0423 TOG array regulator of axonemal microtubules 1 protein-coding 154.5-98 chr8 141739034 141739247 + 0.75 NA Intergenic Intergenic 47173 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 189.75-21 chr11 93927134 93927569 + 0.75 NA Intergenic L1MC1|LINE|L1 -76733 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 225.5-31 chr3 57703075 57703686 + 0.75 NA Intergenic AluJb|SINE|Alu 10175 NR_135550 101929159 Hs.434396 NR_135550 ENSG00000241933 DENND6A-DT - DENND6A divergent transcript ncRNA 244.25-2 chr1 231436736 231437495 + 0.75 NA Intergenic L1MA5|LINE|L1 -12071 NM_022051 54583 Hs.444450 NM_022051 ENSG00000135766 EGLN1 C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6 egl-9 family hypoxia inducible factor 1 protein-coding 167.25-50 chr3 170581954 170582223 + 0.75 NA intron (NM_020949, intron 1 of 7) intron (NM_020949, intron 1 of 7) 3987 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 191-25 chr15 42219103 42219719 + 0.75 NA intron (NM_015497, intron 17 of 19) L1MA8|LINE|L1 -11107 NM_015289 23339 Hs.88025 NM_015289 ENSG00000166887 VPS39 TLP|VAM6|hVam6p VPS39 subunit of HOPS complex protein-coding 196-23 chr2 60011095 60011383 + 0.75 NA Intergenic L1ME3B|LINE|L1 371797 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 186.25-26 chr2 99088146 99088592 + 0.75 NA intron (NR_146001, intron 9 of 18) MER44A|DNA|TcMar-Tigger 52811 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 192-33 chr20 53257064 53257400 + 0.75 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) 71949 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 190-23 chr2 18735574 18735992 + 0.75 NA Intergenic MER11C|LTR|ERVK -146203 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 184-11 chr11 84486006 84486488 + 0.75 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -168908 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 236-2 chr1 181273858 181274371 + 0.75 NA Intergenic L1ME1|LINE|L1 37726 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 296-4 chr18 75294076 75294589 + 0.75 NA Intergenic Intergenic 82803 NM_001308210 10194 Hs.284217 NM_005786 ENSG00000179981 TSHZ1 CAA|NY-CO-33|SDCCAG33|TSH1 teashirt zinc finger homeobox 1 protein-coding 338-4 chr4 57798749 57799573 + 0.75 NA Intergenic THE1C|LTR|ERVL-MaLR 373289 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 268-18 chr8 124341036 124341631 + 0.75 NA intron (NM_194291, intron 1 of 6) MER57A-int|LTR|ERV1 31366 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 193.25-13 chr11 13910631 13911022 + 0.75 NA Intergenic L1MC|LINE|L1 14037 NR_135052 101928132 Hs.568970 NR_135052 ENSG00000254438 LINC02683 - long intergenic non-protein coding RNA 2683 ncRNA 235.75-26 chr6 120762706 120763108 + 0.75 NA Intergenic Intergenic 571573 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 152-33 chr2 13334013 13334308 + 0.75 NA Intergenic (TATAATA)n|Simple_repeat|Simple_repeat -327147 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 208-20 chr2 212079499 212079860 + 0.75 NA intron (NM_001042599, intron 2 of 26) intron (NM_001042599, intron 2 of 26) 346681 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 148.25-68 chr5 33328247 33328505 + 0.75 NA Intergenic MIRb|SINE|MIR 98641 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 270.5-15 chr5 64846128 64846567 + 0.75 NA 3' UTR (NM_001318000, exon 11 of 11) 3' UTR (NM_001318000, exon 11 of 11) 77417 NM_005869 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 313.5-11 chr9 73367516 73368162 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR 215974 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 185.25-30 chr17 6674313 6674624 + 0.75 NA Intergenic Intergenic 16749 NR_045985 100652883 Hs.549540 NR_045985 ALOX15P1 ALOX15P arachidonate 15-lipoxygenase pseudogene 1 pseudo 168.75-52 chr2 142269960 142270333 + 0.75 NA Intergenic Intergenic -138445 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 157.5-73 chr5 25256678 25257029 + 0.75 NA intron (NR_136209, intron 1 of 3) intron (NR_136209, intron 1 of 3) 65900 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 301-6 chr4 164826982 164827533 + 0.75 NA Intergenic AluYh7|SINE|Alu -49921 NM_001297550 100506013 Hs.105196 NM_001297550 ENSG00000248329 APELA ELA|Ende|tdl apelin receptor early endogenous ligand protein-coding 193.25-48 chr4 152390789 152391102 + 0.75 NA intron (NM_033632, intron 2 of 11) intron (NM_033632, intron 2 of 11) -8416 NM_001013415 55294 Hs.561245 NM_018315 ENSG00000109670 FBXW7 AGO|CDC4|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4 F-box and WD repeat domain containing 7 protein-coding 198-46 chr8 130221774 130222163 + 0.75 NA intron (NM_001362925, intron 4 of 29) MIRb|SINE|MIR 74565 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 182-61 chr9 106420972 106421357 + 0.75 NA Intergenic Intergenic -179764 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 190.5-7 chr10 43518498 43518803 + 0.75 NA Intergenic Intergenic 49809 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 214.5-17 chr17 66675552 66675960 + 0.75 NA intron (NM_002737, intron 5 of 16) intron (NM_002737, intron 5 of 16) -111316 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 196.25-36 chr2 197840632 197841164 + 0.75 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 36305 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 156.5-64 chr3 22537401 22537767 + 0.75 NA Intergenic L1ME3|LINE|L1 580445 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 264.25-18 chr7 80511352 80511810 + 0.75 NA intron (NM_001102386, intron 1 of 7) intron (NM_001102386, intron 1 of 7) 483 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 162-72 chr7 50246149 50246454 + 0.75 NA Intergenic L1MEd|LINE|L1 -57763 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 201.5-29 chr2 161758857 161759380 + 0.75 NA intron (NM_001354443, intron 2 of 25) L1MEd|LINE|L1 134702 NM_001354449 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 223.25-6 chr13 69290397 69290804 + 0.75 NA intron (NR_125752, intron 2 of 3) intron (NR_125752, intron 2 of 3) 68254 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 207.25-12 chr11 103660707 103661073 + 0.75 NA Intergenic Intergenic -189016 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 236.5-11 chr16 78132869 78133389 + 0.75 NA intron (NM_001291997, intron 3 of 7) intron (NM_001291997, intron 3 of 7) 33475 NM_016373 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 218-3 chr1 246775419 246775744 + 0.75 NA Intergenic L1ME3B|LINE|L1 -14036 NR_015422 149134 Hs.720494 NM_207326 LINC01341 - long intergenic non-protein coding RNA 1341 ncRNA 176.75-10 chr10 77602781 77603107 + 0.75 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 34864 NM_001014797 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 183.25-16 chr12 119869769 119870197 + 0.75 NA intron (NM_007174, intron 2 of 46) MER102a|DNA|hAT-Charlie 7337 NM_001206999 11113 Hs.119594 NM_007174 ENSG00000122966 CIT CITK|CRIK|MCPH17|STK21 citron rho-interacting serine/threonine kinase protein-coding 229.25-12 chr19 28117482 28117927 + 0.75 NA Intergenic L1ME3|LINE|L1 -323764 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 203.5-45 chr3 120258327 120258719 + 0.75 NA Intergenic Intergenic -14228 NM_001168271 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 264.5-18 chr3 30294386 30294861 + 0.75 NA Intergenic Intergenic -224245 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 154.5-52 chr20 31317774 31318138 + 0.75 NA Intergenic Intergenic -9371 NM_001037731 245930 Hs.580703 NM_001037731 ENSG00000215545 DEFB116 DEFB-16 defensin beta 116 protein-coding 183-41 chr5 91946862 91947137 + 0.75 NA Intergenic Tigger20a|DNA|TcMar-Tigger -563682 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 173-35 chr2 8680647 8680947 + 0.75 NA intron (NR_110153, intron 1 of 1) intron (NR_110153, intron 1 of 1) 1064 NR_110153 100506299 Hs.439031 NR_110153 ENSG00000235092 ID2-AS1 - ID2 antisense RNA 1 ncRNA 166.75-82 chr7 110389168 110389442 + 0.75 NA Intergenic L1ME2z|LINE|L1 -429092 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 167.25-72 chr6 133527187 133527419 + 0.75 NA intron (NM_172103, intron 18 of 18) intron (NM_172103, intron 18 of 18) 285804 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 200-7 chr10 77404606 77404942 + 0.75 NA intron (NM_001271519, intron 1 of 28) MLT1K|LTR|ERVL-MaLR 53902 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 177.25-58 chr5 54241955 54242396 + 0.75 NA intron (NM_019087, intron 1 of 4) (AC)n|Simple_repeat|Simple_repeat 68398 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 211.75-46 chr9 27628266 27628874 + 0.75 NA Intergenic L1MA3|LINE|L1 -54704 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 253.5-27 chr8 112103799 112104449 + 0.75 NA Intergenic L1M4c|LINE|L1 -539369 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 255.25-10 chr15 77318073 77318837 + 0.75 NA intron (NM_024776, intron 1 of 7) intron (NM_024776, intron 1 of 7) -93051 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 195.5-33 chr2 234475703 234476115 + 0.75 NA Intergenic AluY|SINE|Alu 21140 NM_005737 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 350.75 chr18 22701890 22702399 + 0.75 NA Intergenic Intergenic 84693 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 152.25-4 chr1 44220437 44220693 + 0.75 NA TTS (NM_001301699) TTS (NM_001301699) 7094 NM_019100 55929 Hs.8008 NM_019100 ENSG00000178028 DMAP1 DNMAP1|DNMTAP1|EAF2|MEAF2|SWC4 DNA methyltransferase 1 associated protein 1 protein-coding 173.75-74 chr8 137114400 137114698 + 0.75 NA Intergenic L1MB7|LINE|L1 299039 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 208-21 chr20 31339066 31339434 + 0.75 NA Intergenic Intergenic -29351 NM_054112 117285 Hs.274124 NM_054112 ENSG00000131068 DEFB118 C20orf63|DEFB-18|ESC42|ESP13.6 defensin beta 118 protein-coding 201.5-30 chr2 204221093 204221572 + 0.75 NA Intergenic Intergenic 284584 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 200.75-39 chr4 119029129 119029429 + 0.75 NA intron (NM_001128934, intron 3 of 4) intron (NM_001128934, intron 3 of 4) -106505 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1|FATZ-2 myozenin 2 protein-coding 155.5-61 chr3 49995803 49996124 + 0.75 NA intron (NM_001349190, intron 4 of 18) intron (NM_001349190, intron 4 of 18) 55813 NM_001349190 10180 Hs.696735 NM_005777 ENSG00000004534 RBM6 3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16 RNA binding motif protein 6 protein-coding 202-5 chr12 39828172 39828542 + 0.75 NA intron (NR_135051, intron 18 of 18) intron (NR_135051, intron 18 of 18) 202174 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 187.75-77 chr9 95897353 95897766 + 0.75 NA intron (NM_020207, intron 2 of 18) intron (NM_020207, intron 2 of 18) 21551 NM_001010895 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 206.5-38 chr5 118076396 118076855 + 0.75 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -205949 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 180.5-76 chrX 98610224 98610508 + 0.75 NA Intergenic MER44A|DNA|TcMar-Tigger -1045831 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 150-25 chr14 20804408 20804688 + 0.75 NA Intergenic MER89-int|LTR|ERV1 -1704 NM_198234 6035 Hs.78224 NM_002933 ENSG00000129538 RNASE1 RAC1|RIB1|RNS1 ribonuclease A family member 1, pancreatic protein-coding 153.25-6 chr1 51515401 51515855 + 0.75 NA intron (NM_001981, intron 1 of 24) intron (NM_001981, intron 1 of 24) 3638 NM_001981 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 191-8 chr10 72159058 72159422 + 0.75 NA intron (NM_001369110, intron 6 of 8) intron (NM_001369110, intron 6 of 8) 56716 NM_001369091 51008 Hs.500007 NM_015947 ENSG00000138303 ASCC1 ASC1p50|CGI-18|SMABF2|p50 activating signal cointegrator 1 complex subunit 1 protein-coding 443 chr9 91170291 91171204 + 0.75 NA intron (NR_135306, intron 2 of 2) L1ME2|LINE|L1 51685 NR_135306 100129347 Hs.522287 NR_135306 ENSG00000229694 LINC00484 C9orf73 long intergenic non-protein coding RNA 484 ncRNA 165.75-52 chr20 8403554 8404042 + 0.75 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) 155094 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 171.5-61 chr3 97585222 97585583 + 0.75 NA intron (NM_001080448, intron 11 of 17) intron (NM_001080448, intron 11 of 17) 145795 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 153.5-47 chr2 68781231 68781514 + 0.75 NA intron (NM_001007231, intron 2 of 10) AluSc8|SINE|Alu 6462 NM_001166276 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 218-13 chr20 44831919 44832335 + 0.75 NA Intergenic L1ME4a|LINE|L1 -21581 NM_001205317 140730 Hs.517065 NM_182970 ENSG00000101098 RIMS4 C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma regulating synaptic membrane exocytosis 4 protein-coding 151.75-88 chr6 27491985 27492324 + 0.75 NA Intergenic MLT2A1|LTR|ERVL -19036 NM_001318891 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 489.25 chr9 27467634 27469042 + 0.75 NA intron (NM_024761, intron 1 of 3) intron (NM_024761, intron 1 of 3) -55976 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 195.25-15 chr15 34127665 34128050 + 0.75 NA Intergenic L1MB8|LINE|L1 25774 NM_152595 161779 Hs.156317 NM_152595 ENSG00000182405 PGBD4 - piggyBac transposable element derived 4 protein-coding 247-14 chr2 114591917 114592509 + 0.75 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 130636 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 195.25-36 chr3 24969761 24970276 + 0.75 NA intron (NM_001290216, intron 2 of 10) MER58A|DNA|hAT-Charlie 140695 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 279.5-14 chr8 58023097 58023710 + 0.75 NA intron (NM_147189, intron 1 of 4) intron (NM_147189, intron 1 of 4) 28880 NM_147189 90362 Hs.154652 NM_147189 ENSG00000169122 FAM110B C8orf72 family with sequence similarity 110 member B protein-coding 206.75-32 chr2 217244860 217245310 + 0.75 NA Intergenic Intergenic -37648 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 150.25-106 chr9 22064401 22064709 + 0.75 NA intron (NR_047541, intron 5 of 5) intron (NR_047541, intron 5 of 5) -55242 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 224.25-36 chr8 14306685 14307281 + 0.75 NA intron (NM_001322879, intron 2 of 6) intron (NM_001322879, intron 2 of 6) 546527 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 155.75-107 chr8 144946263 144946496 + 0.75 NA intron (NM_006958, intron 1 of 2) intron (NM_006958, intron 1 of 2) 4501 NM_006958 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 242-17 chr4 57823740 57824379 + 0.75 NA Intergenic Intergenic 398187 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 243.25-5 chr11 80720332 80720773 + 0.75 NA Intergenic Intergenic 42251 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 169 chr1 9393070 9393417 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR 35673 NR_104623 100506022 Hs.131775 NR_104622 ENSG00000284693 LINC02606 - long intergenic non-protein coding RNA 2606 ncRNA 203.5-11 chr12 1166507 1166816 + 0.75 NA intron (NR_027948, intron 7 of 19) L1M4|LINE|L1 138913 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 191.25-4 chr1 93323482 93323740 + 0.75 NA intron (NR_034089, intron 8 of 8) intron (NR_034089, intron 8 of 8) 22200 NR_034089 100131564 Hs.732666 NR_034089 CCDC18-AS1 - CCDC18 antisense RNA 1 ncRNA 156-17 chr12 41424478 41424783 + 0.75 NA intron (NM_001164595, intron 3 of 9) MLT1J2|LTR|ERVL-MaLR -13109 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 152.75-73 chr5 30648296 30648573 + 0.75 NA Intergenic L1ME2z|LINE|L1 -545252 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 219.25-40 chr6 55386302 55386991 + 0.75 NA intron (NM_207410, intron 6 of 8) intron (NM_207410, intron 6 of 8) 59177 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 206-2 chr1 99083591 99083914 + 0.75 NA intron (NR_033940, intron 1 of 2) intron (NR_033940, intron 1 of 2) -78891 NM_001010861 163404 Hs.483948 NM_001010861 ENSG00000117598 PLPPR5 LPPR5|PAP2|PAP2D|PRG5 phospholipid phosphatase related 5 protein-coding 164.5-87 chr7 51650364 51650685 + 0.75 NA Intergenic MSTB1|LTR|ERVL-MaLR -257268 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 218.5-26 chr4 54160331 54160754 + 0.75 NA Intergenic MSTD|LTR|ERVL-MaLR 60379 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 159.5-35 chr19 28162058 28162461 + 0.75 NA Intergenic L1MA8|LINE|L1 -368319 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 162.5-46 chr2 211564473 211564804 + 0.75 NA intron (NM_001042599, intron 19 of 26) HAL1|LINE|L1 861722 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 253.5-19 chr5 18929463 18929980 + 0.75 NA Intergenic L1MB7|LINE|L1 956551 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 201.5-52 chr5 87300516 87300994 + 0.75 NA intron (NM_022650, intron 1 of 24) intron (NM_022650, intron 1 of 24) 22873 NR_130929 644285 Hs.709256 NR_130929 LOC644285 - uncharacterized LOC644285 ncRNA 211.25-40 chr6 88775994 88776586 + 0.75 NA intron (NM_001286428, intron 10 of 13) L1MA9|LINE|L1 187328 NM_001286426 8732 Hs.567378 NM_003800 ENSG00000111880 RNGTT CAP1A|HCE|HCE1|hCAP RNA guanylyltransferase and 5'-phosphatase protein-coding 209.75-39 chr8 34319297 34319731 + 0.75 NA Intergenic Intergenic -464407 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 192.5-15 chr15 47815955 47816408 + 0.75 NA intron (NR_120336, intron 3 of 4) intron (NR_120336, intron 3 of 4) 30055 NR_120336 101928442 Hs.242804 NR_120336 ENSG00000259572 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 195.5-78 chrX 93992689 93993243 + 0.75 NA Intergenic Intergenic 318760 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 213.75-29 chr5 82257868 82258422 + 0.75 NA Intergenic Intergenic 20209 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 259.25-3 chr14 63877646 63878069 + 0.75 NA intron (NM_015180, intron 1 of 114) intron (NM_015180, intron 1 of 114) 24853 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 242-20 chr5 64169971 64170550 + 0.75 NA intron (NM_001113561, intron 1 of 7) intron (NM_001113561, intron 1 of 7) 4417 NM_001323292 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 181.5-3 chr1 176380506 176380811 + 0.75 NA Intergenic Intergenic -82517 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 170.25-5 chr1 221885308 221885720 + 0.75 NA Intergenic Intergenic -44848 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 185-36 chr2 76550864 76551313 + 0.75 NA Intergenic Intergenic -434877 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 243.25-6 chr11 86585661 86586193 + 0.75 NA intron (NM_001014811, intron 1 of 13) L2b|LINE|L2 86271 NM_001014811 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 207.25 chr1 27112310 27112720 + 0.75 NA intron (NR_046474, intron 1 of 10) intron (NR_046474, intron 1 of 10) 42610 NM_003047 6548 Hs.469116 NM_003047 ENSG00000090020 SLC9A1 APNH|LIKNS|NHE-1|NHE1|PPP1R143 solute carrier family 9 member A1 protein-coding 155.75-79 chr4 92499119 92499581 + 0.75 NA intron (NM_001286838, intron 1 of 14) L1MEj|LINE|L1 194951 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 151.25-68 chr4 45644823 45645177 + 0.75 NA Intergenic Intergenic 479054 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 246.75-11 chr4 71025804 71026272 + 0.75 NA intron (NM_000788, intron 5 of 6) intron (NM_000788, intron 5 of 6) 32389 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 194.5-57 chr8 78076341 78076775 + 0.75 NA Intergenic Intergenic -439782 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 199.25-42 chr22 33044323 33044785 + 0.75 NA intron (NM_003490, intron 1 of 13) intron (NM_003490, intron 1 of 13) 7990 NM_001369908 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 218.25-44 chr8 90991117 90991467 + 0.75 NA Intergenic Intergenic -6054 NM_001190972 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 192.25-53 chr5 58301224 58301767 + 0.75 NA Intergenic Intergenic 158591 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 172-33 chr2 16734837 16735119 + 0.75 NA Intergenic ORSL|DNA|hAT-Tip100 -69144 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 198.75-40 chr5 2246306 2246781 + 0.75 NA Intergenic L1MCa|LINE|L1 65658 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 209.75-27 chr3 29017346 29017911 + 0.75 NA Intergenic Intergenic 263311 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 251-15 chrX 56308265 56308985 + 0.75 NA Intergenic L1PA15|LINE|L1 75467 NM_001324099 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 180.25-67 chr7 34543841 34544217 + 0.75 NA intron (NR_033665, intron 2 of 3) L1MA7|LINE|L1 -114189 NM_207172 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 155-99 chr8 22382570 22382973 + 0.75 NA intron (NM_001351656, intron 2 of 10) AluJb|SINE|Alu -10065 NM_001351660 23516 Hs.491232 NM_015359 ENSG00000104635 SLC39A14 HCIN|HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19 solute carrier family 39 member 14 protein-coding 218.25-15 chr16 51606110 51606660 + 0.75 NA Intergenic LTR16A1|LTR|ERVL -156134 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 314.5-8 chr3 133228278 133229104 + 0.75 NA intron (NM_001282865, intron 1 of 3) L1ME4a|LINE|L1 28430 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 173.25-48 chr3 81117654 81118096 + 0.75 NA Intergenic L1PB2|LINE|L1 124007 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 186-44 chr6 104049794 104050247 + 0.75 NA Intergenic L1PB1|LINE|L1 809526 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 198.5-33 chr2 232941252 232941721 + 0.75 NA intron (NM_019850, intron 3 of 14) LTR8|LTR|ERV1 -13335 NM_001114090 25791 Hs.97316 NM_019850 ENSG00000066248 NGEF ARHGEF27|EPHEXIN neuronal guanine nucleotide exchange factor protein-coding 157.25-29 chr15 45554348 45554565 + 0.75 NA intron (NR_022014, intron 5 of 5) L1M4|LINE|L1 17205 NR_145777 109617005 NR_145777 ENSG00000207516 SNORA41B - small nucleolar RNA, H/ACA box 41B snoRNA 182.75-17 chr12 83864478 83865003 + 0.75 NA Intergenic Intergenic 1048059 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 328.5-5 chr4 31959130 31959732 + 0.75 NA Intergenic Intergenic -37948 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 207.25-30 chr2 36918754 36919233 + 0.75 NA intron (NM_003162, intron 2 of 17) intron (NM_003162, intron 2 of 17) 47543 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 198.25-28 chr20 54246248 54246618 + 0.75 NA Intergenic L1MC5|LINE|L1 38346 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 206.75-12 chr10 114452276 114452638 + 0.75 NA intron (NM_001322892, intron 7 of 15) intron (NM_001322892, intron 7 of 15) -47679 NM_001351071 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 221.5 chr1 54182212 54182825 + 0.75 NA intron (NM_001353354, intron 5 of 6) L1ME3G|LINE|L1 17512 NM_001353354 606495 Hs.591426 NM_001031672 ENSG00000215883 CYB5RL - cytochrome b5 reductase like protein-coding 191.5-3 chr1 102925561 102925965 + 0.75 NA intron (NM_001854, intron 46 of 66) intron (NM_001854, intron 46 of 66) 182733 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 306-5 chr12 47317080 47317747 + 0.75 NA Intergenic AluSx|SINE|Alu -10014 NR_135024 105369747 Hs.88617 NR_135024 LOC105369747 - uncharacterized LOC105369747 ncRNA 161.75-14 chr13 70711309 70711547 + 0.75 NA Intergenic AluY|SINE|Alu -303713 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 299.25-14 chr6 121316711 121317338 + 0.75 NA intron (NR_104452, intron 3 of 35) intron (NR_104452, intron 3 of 35) 17456 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 170.5-30 chr18 71940332 71940629 + 0.75 NA Intergenic L1ME2|LINE|L1 -158254 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 157.25-47 chr2 56865846 56866271 + 0.75 NA Intergenic Intergenic -680288 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 194.25-42 chr7 51052356 51052686 + 0.75 NA intron (NM_015198, intron 7 of 12) L4_C_Mam|LINE|RTE-X -259068 NM_001371008 408 chr1 119108794 119109578 + 0.75 NA intron (NM_015836, intron 1 of 5) L1MC1|LINE|L1 -31210 NR_125976 101929147 Hs.697821 NR_125974 ENSG00000231365 WARS2-AS1 - WARS2 antisense RNA 1 ncRNA 169-42 chr3 55921688 55922167 + 0.75 NA intron (NR_132749, intron 12 of 17) intron (NR_132749, intron 12 of 17) -69333 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 154.75-12 chr10 67957757 67958008 + 0.75 NA intron (NM_001278186, intron 14 of 22) AluSx3|SINE|Alu 53001 NR_131184 100009667 NR_131184 POU5F1P5 Oct4-pg5 POU class 5 homeobox 1 pseudogene 5 pseudo 215.5-40 chr5 57252948 57253467 + 0.75 NA intron (NM_001203246, intron 9 of 10) intron (NM_001203246, intron 9 of 10) 39133 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 179.25-73 chr8 78081793 78082134 + 0.75 NA Intergenic Intergenic -434377 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 194.5-33 chr2 149118395 149118672 + 0.75 NA intron (NM_001317002, intron 1 of 7) intron (NM_001317002, intron 1 of 7) 359 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 204.25-10 chr14 29273231 29273565 + 0.75 NA Intergenic Intergenic -487611 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 215-25 chr4 53884226 53884717 + 0.75 NA Intergenic Intergenic 102811 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 148-55 chr2 191776864 191777183 + 0.75 NA Intergenic L1PA13|LINE|L1 -15817 NR_157850 729254 NR_157850 LOC729254 - hCG2045843 ncRNA 198.25-37 chr4 69158612 69159217 + 0.75 NA Intergenic Intergenic -23186 NR_136191 105377267 Hs.654304 NR_136191 ENSG00000250696 LOC105377267 - uncharacterized LOC105377267 ncRNA 194.5-15 chr11 122449075 122449538 + 0.75 NA Intergenic Intergenic -26435 NR_137179 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 221-35 chr8 113871836 113872257 + 0.75 NA Intergenic L1PA10|LINE|L1 -435107 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 263-2 chr1 185654635 185655073 + 0.75 NA Intergenic Intergenic -26366 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 190-10 chr11 32635143 32635721 + 0.75 NA intron (NM_001008391, intron 14 of 17) L1MEc|LINE|L1 51601 NM_006360 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 180.5-31 chr18 69599105 69599489 + 0.75 NA intron (NM_152721, intron 2 of 7) intron (NM_152721, intron 2 of 7) 129366 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 189.25-29 chr2 163757175 163757693 + 0.75 NA Intergenic MIR3|SINE|MIR -21426 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 190.25 chr1 113916742 113917077 + 0.75 NA Intergenic Intergenic 11583 NM_001319946 64858 Hs.591412 NM_022836 ENSG00000118655 DCLRE1B APOLLO|SNM1B|SNMIB DNA cross-link repair 1B protein-coding 161.25-53 chr5 8423552 8423920 + 0.75 NA intron (NR_039984, intron 2 of 5) intron (NR_039984, intron 2 of 5) 33828 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 231.75-16 chr3 44101644 44101988 + 0.75 NA Intergenic Intergenic -12396 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 201.5-64 chr8 82980566 82981076 + 0.75 NA Intergenic Intergenic 68717 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 146.25-89 chr7 93412173 93412594 + 0.75 NA Intergenic Intergenic 70472 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 209-20 chr2 45120962 45121542 + 0.75 NA Intergenic Intergenic -111800 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 163.75-36 chr21 23668698 23669115 + 0.75 NA Intergenic Intergenic -284071 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 284 chr15 96704141 96704638 + 0.75 NA Intergenic Intergenic 77265 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 207.75-43 chr7 51544780 51545262 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -151765 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 189.5-75 chr8 130872554 130873003 + 0.75 NA intron (NM_001115, intron 8 of 17) intron (NM_001115, intron 8 of 17) 168131 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 164.5-21 chr14 70283998 70284266 + 0.75 NA Intergenic AluJb|SINE|Alu -36331 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 302.5-13 chr8 118246286 118246971 + 0.75 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -134809 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 151-46 chr2 194339525 194339921 + 0.75 NA Intergenic Intergenic -4546 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 146.75-117 chr8 79434517 79434785 + 0.75 NA Intergenic Intergenic 102463 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 163.25-30 chr16 9397261 9397649 + 0.75 NA intron (NR_135195, intron 1 of 2) L1PA15|LINE|L1 41867 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 316-8 chr8 109141945 109142666 + 0.75 NA Intergenic Intergenic 55677 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 286.25-11 chr7 132510626 132511114 + 0.75 NA intron (NM_181775, intron 2 of 4) intron (NM_181775, intron 2 of 4) 65600 NM_001105543 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 232.25-36 chr9 31650343 31650809 + 0.75 NA Intergenic MLT1H1|LTR|ERVL-MaLR -269086 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 162.5-17 chr11 68768892 68769349 + 0.75 NA intron (NM_001031847, intron 14 of 18) intron (NM_001031847, intron 14 of 18) -17600 NM_001039656 9633 Hs.145932 NM_004923 ENSG00000132749 TESMIN CXCDC2|MTL5|MTLT testis expressed metallothionein like protein protein-coding 297.5-3 chr1 230182953 230183588 + 0.75 NA intron (NM_004481, intron 2 of 15) L1MC1|LINE|L1 116032 NM_004481 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 172.5-59 chr4 132246898 132247248 + 0.75 NA Intergenic Intergenic -344016 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 193.5-46 chr3 112922796 112923200 + 0.75 NA 3' UTR (NM_170780, exon 7 of 7) 3' UTR (NM_170780, exon 7 of 7) 52105 NM_138806 131450 Hs.309158 NM_138806 ENSG00000163606 CD200R1 CD200R|HCRTR2|MOX2R|OX2R CD200 receptor 1 protein-coding 189-14 chr12 39618319 39618592 + 0.75 NA intron (NM_005164, intron 1 of 9) intron (NM_005164, intron 1 of 9) 1348 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 177.25-28 chr17 56387590 56387884 + 0.75 NA intron (NM_001370326, intron 8 of 20) L1M6|LINE|L1 -205962 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 225.75-21 chr4 63017007 63017645 + 0.75 NA Intergenic HAL1|LINE|L1 -855561 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 156.25-21 chr14 54102494 54102760 + 0.75 NA Intergenic Intergenic -145736 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 264.75-7 chr2 138393163 138393622 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger -108378 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 158.75-91 chrX 55967978 55968248 + 0.75 NA intron (NM_001324105, intron 1 of 5) L1MA3|LINE|L1 59828 NM_001324104 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 317-6 chr7 11369410 11370083 + 0.75 NA TTS (NM_015204) TTS (NM_015204) 395874 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 184.75-17 chr12 7471552 7471935 + 0.75 NA intron (NR_163255, intron 16 of 16) L1PA8|LINE|L1 -27558 NM_174941 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 181.75-65 chr8 87334397 87334755 + 0.75 NA intron (NM_173538, intron 8 of 10) L1PA8|LINE|L1 468161 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 161-4 chr1 80379888 80380113 + 0.75 NA Intergenic Intergenic -155755 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 155-23 chr12 115555695 115556084 + 0.75 NA Intergenic Intergenic 592765 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 188-19 chr12 13913449 13913776 + 0.75 NA intron (NM_000834, intron 1 of 12) intron (NM_000834, intron 1 of 12) 66744 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 207.5-13 chr13 52939680 52940222 + 0.75 NA Intergenic MIRc|SINE|MIR -88862 NM_006418 10562 Hs.508113 NM_006418 ENSG00000102837 OLFM4 GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD olfactomedin 4 protein-coding 162.25-87 chr7 50744966 50745369 + 0.75 NA intron (NM_001371008, intron 1 of 15) Tigger2b_Pri|DNA|TcMar-Tigger -12814 NM_001001549 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 174-59 chr6 122305664 122305997 + 0.75 NA Intergenic L1MEf|LINE|L1 -93721 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 169-12 chr11 67181803 67182133 + 0.75 NA intron (NR_027473, intron 5 of 20) intron (NR_027473, intron 5 of 20) -58046 NM_001256405 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 158.5-90 chr6 89335145 89335389 + 0.75 NA intron (NM_016021, intron 6 of 7) intron (NM_016021, intron 6 of 7) 17455 NM_016021 51465 Hs.163776 NM_016021 ENSG00000198833 UBE2J1 CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p ubiquitin conjugating enzyme E2 J1 protein-coding 157.75-92 chr5 127344048 127344346 + 0.75 NA intron (NM_001308121, intron 4 of 13) intron (NM_001308121, intron 4 of 13) 53401 NM_032446 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 180-66 chr8 49469680 49470136 + 0.75 NA Intergenic L2a|LINE|L2 42272 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 344.5-6 chr2 134619543 134620258 + 0.75 NA intron (NM_030923, intron 2 of 7) L1MB7|LINE|L1 99100 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 177.5-42 chr4 188921458 188921760 + 0.75 NA Intergenic LTR27D|LTR|ERV1 144952 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 220.25-33 chr5 11352198 11352662 + 0.75 NA intron (NM_001288715, intron 7 of 20) L1PA10|LINE|L1 236487 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 239.5-10 chr12 85940046 85940551 + 0.75 NA Intergenic MLT2A1|LTR|ERVL 66003 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 164.75-31 chr17 71098621 71098983 + 0.75 NA non-coding (NR_104152, exon 4 of 4) non-coding (NR_104152, exon 4 of 4) 103377 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 195-7 chr10 53623063 53623383 + 0.75 NA Intergenic MamTip3|DNA|hAT-Tip100 -851523 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 166-72 chr7 108849077 108849519 + 0.75 NA Intergenic Intergenic 35289 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 236.75-5 chr11 101029669 101030219 + 0.75 NA non-coding (NR_073142, exon 7 of 7) non-coding (NR_073142, exon 7 of 7) 95670 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 201.75-14 chr15 76999462 76999831 + 0.75 NA intron (NR_135552, intron 1 of 11) intron (NR_135552, intron 1 of 11) 4520 NM_001321135 9051 Hs.129758 NM_003978 ENSG00000140368 PSTPIP1 CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP proline-serine-threonine phosphatase interacting protein 1 protein-coding 188.25-42 chr4 178152258 178152662 + 0.75 NA Intergenic Intergenic -244524 NR_108093 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 273.5-10 chr3 178166371 178166962 + 0.75 NA Intergenic L1MA3|LINE|L1 -252535 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 207.25-2 chr1 51751076 51751573 + 0.75 NA intron (NM_148908, intron 8 of 22) AluSg|SINE|Alu 21474 NM_148905 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 175.25-26 chr16 8879375 8879689 + 0.75 NA Intergenic AluSx|SINE|Alu -10520 NM_001278260 23589 Hs.632184 NM_014316 ENSG00000153048 CARHSP1 CRHSP-24|CRHSP24|CSDC1 calcium regulated heat stable protein 1 protein-coding 150.75-61 chr3 193263348 193263604 + 0.75 NA intron (NM_020386, intron 3 of 3) intron (NM_020386, intron 3 of 3) 21697 NR_026877 84789 Hs.676481 NM_032703 MGC2889 - uncharacterized protein MGC2889 ncRNA 247-20 chr6 71022527 71022920 + 0.75 NA Intergenic MIRb|SINE|MIR -65663 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 165.75-48 chr2 203949551 203949917 + 0.75 NA intron (NM_012092, intron 1 of 4) intron (NM_012092, intron 1 of 4) 12986 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 156.25-76 chr5 142802692 142803138 + 0.75 NA intron (NM_001349547, intron 1 of 21) MIRc|SINE|MIR 31688 NM_001349547 23092 Hs.654668 NM_015071 ENSG00000145819 ARHGAP26 GRAF|GRAF1|OPHN1L|OPHN1L1 Rho GTPase activating protein 26 protein-coding 164.25-63 chr3 186271448 186271920 + 0.75 NA intron (NM_001346, intron 11 of 24) L2c|LINE|L2 90550 NM_001346 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 253.25-4 chr13 112097570 112098089 + 0.75 NA intron (NR_120392, intron 2 of 3) UCON84|Unknown|Unknown -9290 NR_120394 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 181-25 chr20 10716794 10717222 + 0.75 NA Intergenic Intergenic -36082 NR_110611 101929395 Hs.244862 NR_110611 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 182.5-67 chr6 87225821 87226080 + 0.75 NA intron (NM_015021, intron 4 of 7) L3|LINE|CR1 70385 NM_001351444 23036 Hs.444800 NM_015021 ENSG00000188994 ZNF292 Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3 zinc finger protein 292 protein-coding 266-5 chr15 80115515 80116132 + 0.75 NA intron (NM_001242917, intron 2 of 6) intron (NM_001242917, intron 2 of 6) 17407 NM_001242919 54469 Hs.596679 NM_019006 ENSG00000086666 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger AN1-type containing 6 protein-coding 239.75-13 chr18 70314885 70315411 + 0.75 NA intron (NM_004232, intron 1 of 1) L1M5|LINE|L1 -20291 NR_126336 101927481 Hs.633706 NR_126336 ENSG00000266258 LINC01909 - long intergenic non-protein coding RNA 1909 ncRNA 189.75-58 chr5 19923122 19923638 + 0.75 NA intron (NM_001349562, intron 2 of 13) MLT1G|LTR|ERVL-MaLR -37108 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 176.75-90 chr8 120100543 120100828 + 0.75 NA Intergenic L1PA15|LINE|L1 -24417 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 157.5-80 chr5 93535769 93536076 + 0.75 NA intron (NR_109825, intron 5 of 8) L1MA6|LINE|L1 35421 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 186-3 chr1 190293475 190293811 + 0.75 NA intron (NM_199051, intron 2 of 7) L1M1|LINE|L1 182367 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 259.25-8 chr3 125206675 125207223 + 0.75 NA intron (NM_001195483, intron 1 of 12) MSTA|LTR|ERVL-MaLR 4450 NM_001195483 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 156.75-27 chr12 41205097 41205417 + 0.75 NA intron (NM_001164595, intron 3 of 9) MER5C|DNA|hAT-Charlie 16937 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 178-56 chr6 40976934 40977322 + 0.75 NA intron (NR_110873, intron 1 of 5) L1PREC2|LINE|L1 46152 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 166.25-11 chr10 83203166 83203456 + 0.75 NA Intergenic Intergenic 473778 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 193.75-7 chr10 54786382 54786941 + 0.75 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) 14570 NM_001142771 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 193.25-16 chr12 44363359 44363715 + 0.75 NA intron (NM_001286211, intron 6 of 6) intron (NM_001286211, intron 6 of 6) 512124 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 196.5-11 chr12 62839130 62839533 + 0.75 NA intron (NM_020700, intron 1 of 9) MER102b|DNA|hAT-Charlie 95819 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 251-2 chr1 191822043 191822558 + 0.75 NA Intergenic Intergenic -336162 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 177-28 chr2 77853870 77854341 + 0.75 NA intron (NR_110288, intron 2 of 3) intron (NR_110288, intron 2 of 3) -61829 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 171.5-95 chr7 123078403 123078746 + 0.75 NA Intergenic Intergenic -82874 NM_016945 50833 Hs.272395 NM_016945 ENSG00000128519 TAS2R16 BGLPT|T2R16 taste 2 receptor member 16 protein-coding 165.75-28 chr12 42108038 42108444 + 0.75 NA intron (NM_173601, intron 4 of 7) intron (NM_173601, intron 4 of 7) 36633 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 175.75-68 chr9 31310446 31310774 + 0.75 NA Intergenic L2a|LINE|L2 70880 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 275.25 chr1 102988932 102989466 + 0.75 NA intron (NM_001854, intron 29 of 66) intron (NM_001854, intron 29 of 66) 119297 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 246.25-4 chr1 193747752 193748189 + 0.75 NA Intergenic L1ME2|LINE|L1 443225 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 294 chr16 79213834 79214527 + 0.75 NA Intergenic L2a|LINE|L2 386557 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 204-38 chr7 83804004 83804341 + 0.75 NA Intergenic Intergenic -155033 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 241.75-18 chr5 27055572 27056064 + 0.75 NA Intergenic L2c|LINE|L2 -17232 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 156.25-16 chr12 23918116 23918399 + 0.75 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) 31413 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 206.75-29 chr2 178864823 178865172 + 0.75 NA intron (NM_173648, intron 17 of 23) intron (NM_173648, intron 17 of 23) -57574 NM_133432 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 194.75-4 chr1 244576643 244576949 + 0.75 NA intron (NM_001130957, intron 11 of 21) Tigger13a|DNA|TcMar-Tigger -76252 NR_123736 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 271.75-9 chr17 71142066 71142558 + 0.75 NA intron (NR_104152, intron 2 of 3) intron (NR_104152, intron 2 of 3) 59867 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 201.25-4 chr10 18647205 18647653 + 0.75 NA intron (NM_001351117, intron 1 of 9) intron (NM_001351117, intron 1 of 9) 4158 NM_001351115 221078 Hs.396175 NM_182543 ENSG00000241058 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun RNA methyltransferase 6 protein-coding 154-34 chr15 60219809 60220142 + 0.75 NA Intergenic Intergenic 178011 NM_001002857 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 168.5-25 chr14 58596619 58597028 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR -37245 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 219.25-20 chr2 31026066 31026406 + 0.75 NA intron (NM_024572, intron 1 of 14) intron (NM_024572, intron 1 of 14) 103404 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 180.5-23 chr15 58757797 58758311 + 0.75 NA Intergenic AluJo|SINE|Alu -8347 NM_001320570 102 Hs.172028 NM_001110 ENSG00000137845 ADAM10 AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz ADAM metallopeptidase domain 10 protein-coding 200-23 chr18 29923140 29923506 + 0.75 NA Intergenic Intergenic -375587 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 237.5-15 chr2 95318556 95319134 + 0.75 NA intron (NM_013434, intron 2 of 8) intron (NM_013434, intron 2 of 8) 21498 NM_013434 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 161.75-29 chr2 34711193 34711494 + 0.75 NA intron (NR_126404, intron 1 of 2) L1M5|LINE|L1 33786 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 204.75-8 chr11 32371841 32372372 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR 28294 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 253.75-6 chr12 8088259 8088715 + 0.75 NA intron (NM_015509, intron 1 of 7) L2a|LINE|L2 6213 NM_015509 25977 Hs.555927 NM_015509 ENSG00000089818 NECAP1 EIEE21 NECAP endocytosis associated 1 protein-coding 263-4 chr14 43854604 43855163 + 0.75 NA Intergenic L2b|LINE|L2 652400 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 176.25-21 chr12 131177352 131177700 + 0.75 NA intron (NR_026670, intron 1 of 4) L1PB3|LINE|L1 12515 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 157.25-78 chr5 166552081 166552429 + 0.75 NA Intergenic L1ME3C|LINE|L1 374115 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 232.5-54 chr9 132679628 132680154 + 0.75 NA intron (NM_012204, intron 2 of 4) intron (NM_012204, intron 2 of 4) 9427 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 210.75-4 chr1 210487185 210487681 + 0.75 NA intron (NM_001122834, intron 8 of 11) intron (NM_001122834, intron 8 of 11) 158067 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 205.25-29 chr4 133626839 133627210 + 0.75 NA Intergenic Intergenic 477730 NM_020815 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 258.75-14 chr3 87744875 87745250 + 0.75 NA Intergenic Intergenic -47644 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 164-6 chr10 53929720 53930002 + 0.75 NA intron (NM_001354411, intron 26 of 34) intron (NM_001354411, intron 26 of 34) -556369 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 187.5-2 chr1 95587483 95587777 + 0.75 NA Intergenic Intergenic 77514 NR_110622 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 150.5-4 chr1 65334100 65334364 + 0.75 NA intron (NM_001256864, intron 1 of 18) intron (NM_001256864, intron 1 of 18) 24689 NM_001256864 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 161.5-15 chr10 47435043 47435466 + 0.75 NA Intergenic L1PA17|LINE|L1 -20779 NR_134499 105378292 Hs.131331 NR_134499 LOC105378292 - uncharacterized LOC105378292 ncRNA 240-20 chr4 31415436 31416107 + 0.75 NA Intergenic Intergenic -90773 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 260.25-11 chr2 107095306 107095808 + 0.75 NA Intergenic Intergenic -208448 NM_001142352 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 199.25-20 chr15 77770730 77771114 + 0.75 NA intron (NM_001301186, intron 2 of 5) intron (NM_001301186, intron 2 of 5) 16127 NM_001301195 84894 Hs.656765 NM_032808 ENSG00000169783 LINGO1 LERN1|LRRN6A|MRT64|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 241.5-9 chr18 34024043 34024685 + 0.75 NA intron (NM_001353233, intron 5 of 11) intron (NM_001353233, intron 5 of 11) 24248 NM_001353236 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 238-15 chr4 175204013 175204395 + 0.75 NA Intergenic Intergenic 285846 NM_001278127 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 146.75-16 chr10 111052703 111052975 + 0.75 NA Intergenic Intergenic -24190 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 151.25-73 chr5 53433046 53433319 + 0.75 NA Intergenic Intergenic -47447 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 188.25-51 chr6 46186422 46186807 + 0.75 NA Intergenic MER58C|DNA|hAT-Charlie -15604 NM_021572 59084 Hs.35198 NM_021572 ENSG00000112796 ENPP5 NPP-5|NPP5 ectonucleotide pyrophosphatase/phosphodiesterase family member 5 protein-coding 214-19 chr18 76167644 76168119 + 0.75 NA Intergenic Intergenic -41629 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 168.75-28 chr17 59669485 59669800 + 0.75 NA intron (NM_001288653, intron 14 of 31) intron (NM_001288653, intron 14 of 31) 37956 NM_001015509 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 177.75-58 chr5 8975651 8976222 + 0.75 NA Intergenic Intergenic 77959 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 202-42 chr5 143050617 143051054 + 0.75 NA intron (NR_146198, intron 14 of 22) intron (NR_146198, intron 14 of 22) -141665 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 172.5-87 chr9 95909107 95909602 + 0.75 NA intron (NM_020207, intron 4 of 18) MER58C|DNA|hAT-Charlie 33346 NM_001010895 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 217.25-36 chr5 11236830 11237203 + 0.75 NA intron (NM_001288715, intron 8 of 20) AluY|SINE|Alu 351901 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 168-59 chr5 173971988 173972532 + 0.75 NA Intergenic MamRep4096|DNA|hAT-Tip100 -16910 NM_001144954 133491 Hs.131469 NM_001144954 ENSG00000185056 C5orf47 - chromosome 5 open reading frame 47 protein-coding 192.75-34 chr20 2632936 2633237 + 0.75 NA intron (NM_080751, intron 17 of 19) L1M4|LINE|L1 -19546 NR_027700 10528 Hs.376064 NM_006392 ENSG00000101361 NOP56 NOL5A|SCA36 NOP56 ribonucleoprotein protein-coding 212.25-23 chr2 39470960 39471308 + 0.75 NA intron (NR_037875, intron 3 of 5) L1ME3G|LINE|L1 33718 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 230-13 chr2 67163363 67163755 + 0.75 NA intron (NR_038844, intron 4 of 7) intron (NR_038844, intron 4 of 7) -49849 NR_110568 101927661 Hs.580508 NR_110568 ENSG00000235885 LOC101927661 - uncharacterized LOC101927661 ncRNA 173.25-13 chr12 1185650 1185987 + 0.75 NA intron (NR_027948, intron 10 of 19) intron (NR_027948, intron 10 of 19) 158070 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 198.75-14 chr12 127093347 127093767 + 0.75 NA Intergenic Intergenic -33160 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LINC02405 - long intergenic non-protein coding RNA 2405 ncRNA 155.25-86 chr8 81463539 81464030 + 0.75 NA Intergenic Intergenic -2261 NM_001080526 646480 Hs.653176 NM_001080526 ENSG00000205186 FABP9 PERF|PERF15|T-FABP|TLBP fatty acid binding protein 9 protein-coding 225.5-15 chr15 35931493 35931873 + 0.75 NA Intergenic Intergenic 4827 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 167-71 chr5 80101122 80101412 + 0.75 NA Intergenic HAL1|LINE|L1 -17602 NR_109930 101929215 NR_109930 ENSG00000249825 CTD-2201I18.1 - uncharacterized LOC101929215 ncRNA 153.25-105 chr7 19484774 19485096 + 0.75 NA Intergenic Intergenic 220501 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 215-6 chr14 73053568 73054043 + 0.75 NA Intergenic Intergenic -4729 NM_021239 58517 Hs.531106 NM_021239 ENSG00000119707 RBM25 NET52|RED120|RNPC7|S164|Snu71|fSAP94 RNA binding motif protein 25 protein-coding 166.25-6 chr1 242115043 242115508 + 0.75 NA intron (NM_001320272, intron 7 of 10) MER1A|DNA|hAT-Charlie -116177 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 145.75-34 chr14 79761314 79761563 + 0.75 NA intron (NR_073547, intron 18 of 20) intron (NR_073547, intron 18 of 20) -449981 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 203.5-43 chr3 96737270 96737698 + 0.75 NA Intergenic Intergenic -77110 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 268-8 chr17 58214683 58215272 + 0.75 NA intron (NM_001321269, intron 4 of 16) Tigger19a|DNA|TcMar-Tigger 4278 NM_001330397 54903 Hs.408843 NM_017777 ENSG00000011143 MKS1 BBS13|JBTS28|MES|MKS|POC12 MKS transition zone complex subunit 1 protein-coding 147.75-86 chr5 31387251 31387535 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR 144700 NM_013235 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 198.5-5 chr1 188192541 188192957 + 0.75 NA Intergenic Intergenic 749121 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 159.75-86 chr6 49717072 49717404 + 0.75 NA Intergenic MER41A|LTR|ERV1 -3648 NM_001261822 7180 Hs.2042 NM_003296 ENSG00000124490 CRISP2 CRISP-2|CT36|GAPDL5|TPX1|TSP1 cysteine rich secretory protein 2 protein-coding 175.75-21 chr16 2710841 2711102 + 0.75 NA Intergenic Intergenic 9253 NM_031948 83886 Hs.332878 NM_031948 ENSG00000172382 PRSS27 CAPH2|MPN serine protease 27 protein-coding 152.25-101 chr8 109051071 109051420 + 0.75 NA Intergenic Intergenic -35383 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 244-6 chr12 119710335 119710919 + 0.75 NA intron (NM_007174, intron 36 of 46) intron (NM_007174, intron 36 of 46) 3097 NR_031589 100302274 NR_031589 ENSG00000283768 MIR1178 MIRN1178|hsa-mir-1178 microRNA 1178 ncRNA 171.5-81 chr5 99802338 99802774 + 0.75 NA Intergenic L1MA4|LINE|L1 268566 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 151.5-74 chr4 33469066 33469476 + 0.75 NA Intergenic AluJr|SINE|Alu 570622 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 186-47 chr7 31615395 31615664 + 0.75 NA intron (NM_194300, intron 8 of 12) L3|LINE|CR1 62527 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 175-29 chr3 54869479 54869975 + 0.75 NA intron (NM_018398, intron 17 of 37) intron (NM_018398, intron 17 of 37) 31528 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 188-37 chr20 22444774 22445326 + 0.75 NA Intergenic L2a|LINE|L2 -24407 NR_027089 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 204.75-15 chr14 47095473 47095834 + 0.75 NA intron (NM_001113498, intron 6 of 16) intron (NM_001113498, intron 6 of 16) 247593 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 150.25-46 chr18 60340837 60341205 + 0.75 NA Intergenic MER34A|LTR|ERV1 31754 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 309.5-8 chr8 99168439 99169115 + 0.75 NA intron (NM_017890, intron 15 of 61) intron (NM_017890, intron 15 of 61) 155511 NM_015243 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 307.5-13 chrX 45136412 45137074 + 0.75 NA Intergenic Intergenic 64133 NM_024689 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 204.75-54 chr8 50774476 50774834 + 0.75 NA intron (NR_135797, intron 20 of 20) L1MB7|LINE|L1 610524 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 202.25-53 chr7 39167805 39168229 + 0.75 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -154450 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 278.75-11 chr8 78437423 78438115 + 0.75 NA Intergenic MLT2B1|LTR|ERVL -78571 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 224.75-25 chr3 113897993 113898593 + 0.75 NA intron (NM_001172105, intron 1 of 12) intron (NM_001172105, intron 1 of 12) 793 NM_001172105 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 195-8 chr10 55526763 55527238 + 0.75 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -72042 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 177.75-66 chr7 29387818 29388187 + 0.75 NA intron (NM_001293072, intron 3 of 12) MERX|DNA|TcMar-Tigger -91710 NM_001293075 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 163.5-22 chr12 64525405 64525774 + 0.75 NA Intergenic Intergenic 73469 NM_013254 29110 Hs.505874 NM_013254 ENSG00000183735 TBK1 FTDALS4|IIAE8|NAK|T2K TANK binding kinase 1 protein-coding 287.75-12 chrX 48669090 48669597 + 0.75 NA Intergenic MIRb|SINE|MIR -14454 NM_000377 7454 Hs.2157 NM_000377 ENSG00000015285 WAS IMD2|SCNX|THC|THC1|WASP|WASPA WASP actin nucleation promoting factor protein-coding 206.25-10 chr11 91449613 91450095 + 0.75 NA Intergenic Intergenic -580652 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 324.25-6 chr4 37254994 37255541 + 0.75 NA intron (NM_001144990, intron 1 of 6) intron (NM_001144990, intron 1 of 6) 10524 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 179.5-41 chr2 114741368 114741687 + 0.75 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 92021 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 201.25-42 chr6 132535755 132536257 + 0.75 NA Intergenic (ATCT)n|Simple_repeat|Simple_repeat -2282 NM_175057 134860 Hs.434116 NM_175057 ENSG00000237110 TAAR9 TA3|TAR3|TAR9|TRAR3 trace amine associated receptor 9 (gene/pseudogene) protein-coding 267.5-9 chr2 38864426 38865015 + 0.75 NA intron (NM_001329963, intron 2 of 23) L2a|LINE|L2 11214 NM_001329963 90957 Hs.468226 NM_198963 ENSG00000163214 DHX57 DDX57 DExH-box helicase 57 protein-coding 187.5-25 chr18 2541038 2541402 + 0.75 NA intron (NM_001308401, intron 7 of 7) intron (NM_001308401, intron 7 of 7) 30285 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 168-21 chr15 25511572 25511816 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -72638 NM_130839 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 166.25-43 chr3 154904550 154904876 + 0.75 NA Intergenic L1MCa|LINE|L1 -119411 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 168.25-48 chr3 138742203 138742551 + 0.75 NA intron (NM_006219, intron 5 of 23) intron (NM_006219, intron 5 of 23) -34756 NM_001256045 5291 Hs.239818 NM_006219 ENSG00000051382 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding 196.5-30 chr21 16105823 16106269 + 0.75 NA intron (NR_111005, intron 1 of 6) intron (NR_111005, intron 1 of 6) 34932 NR_111004 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 258.5-17 chr3 100836930 100837427 + 0.75 NA intron (NM_001349331, intron 22 of 42) intron (NM_001349331, intron 22 of 42) 127636 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 223.25-9 chr17 55731557 55731948 + 0.75 NA 5' UTR (NM_001099640, exon 1 of 4) 5' UTR (NM_001099640, exon 1 of 4) 329 NM_001099640 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 146-51 chr3 81091211 81091572 + 0.75 NA intron (NR_132411, intron 1 of 1) LTR37B|LTR|ERV1 97523 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 256.25-4 chr10 63583454 63584213 + 0.75 NA intron (NM_001001330, intron 2 of 7) intron (NM_001001330, intron 2 of 7) -61943 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 298 chr12 96643231 96643795 + 0.75 NA intron (NM_001306084, intron 32 of 67) intron (NM_001306084, intron 32 of 67) 153936 NM_001367885 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 178.75-40 chr3 224505 224877 + 0.75 NA intron (NR_045572, intron 1 of 2) MSTA|LTR|ERVL-MaLR 26802 NR_045572 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 252-15 chr9 118588453 118588884 + 0.75 NA Intergenic MER4E1|LTR|ERV1 -91003 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 150-45 chr2 220614743 220615166 + 0.75 NA Intergenic L4_C_Mam|LINE|RTE-X -708389 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 254-16 chr8 141466336 141466792 + 0.75 NA intron (NR_102364, intron 17 of 26) intron (NR_102364, intron 17 of 26) 40665 NR_160399 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 197.5-59 chr8 84396671 84397033 + 0.75 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -18632 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 162.75-20 chr12 50847242 50847594 + 0.75 NA intron (NM_182559, intron 2 of 4) intron (NM_182559, intron 2 of 4) 4492 NM_182559 283471 Hs.125571 NM_182559 ENSG00000186452 TMPRSS12 CT151 transmembrane serine protease 12 protein-coding 146.25-44 chr2 136078085 136078430 + 0.75 NA Intergenic Intergenic 37978 NM_001008540 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 231 chr1 101651756 101652155 + 0.75 NA Intergenic L1MA4|LINE|L1 195125 NM_001288821 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 157-47 chr2 54769858 54770231 + 0.75 NA intron (NM_001039753, intron 1 of 40) intron (NM_001039753, intron 1 of 40) 45032 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 211-26 chr3 61506693 61507107 + 0.75 NA Intergenic Tigger2a|DNA|TcMar-Tigger -54671 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 174.5-50 chr3 38805495 38805865 + 0.75 NA Intergenic Intergenic -11670 NM_006514 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 213.25-13 chr14 72347485 72348063 + 0.75 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -169046 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 182.25-64 chr8 82439897 82440345 + 0.75 NA Intergenic Intergenic -471983 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 197.5-5 chr10 13968688 13969085 + 0.75 NA intron (NM_018027, intron 2 of 24) intron (NM_018027, intron 2 of 24) 3010 NM_001318337 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 229-10 chr2 14704133 14704808 + 0.75 NA Intergenic Intergenic 71753 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 167.25-78 chr8 77766199 77766565 + 0.75 NA Intergenic Intergenic 315685 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 150.5-83 chr4 74194079 74194326 + 0.75 NA intron (NM_001351314, intron 5 of 9) L1ME2z|LINE|L1 36084 NM_001351314 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 215.25-12 chr12 81324953 81325285 + 0.75 NA intron (NM_001220474, intron 20 of 30) intron (NM_001220474, intron 20 of 30) 44250 NM_001220479 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 162.75-47 chr3 36345780 36346244 + 0.75 NA Intergenic Intergenic -34475 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 150.25-70 chr4 88578599 88578831 + 0.75 NA Intergenic MIRb|SINE|MIR -13708 NM_001271602 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 246.5-15 chr21 16056034 16056580 + 0.75 NA Intergenic L4_C_Mam|LINE|RTE-X -14181 NR_136541 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 225.5-18 chr2 59285488 59285841 + 0.75 NA Intergenic Intergenic 67956 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 238-9 chr15 38000614 38001004 + 0.75 NA Intergenic L1M1|LINE|L1 -39584 NR_120330 101928227 Hs.602381 NR_120330 ENSG00000259225 LINC02345 - long intergenic non-protein coding RNA 2345 ncRNA 156.25-26 chr15 49122325 49122733 + 0.75 NA TTS (NM_004236) TTS (NM_004236) 33070 NM_001143887 9318 Hs.369614 NM_004236 ENSG00000166200 COPS2 ALIEN|CSN2|SGN2|TRIP15 COP9 signalosome subunit 2 protein-coding 255.25-5 chr12 28493305 28493830 + 0.75 NA intron (NM_001352082, intron 13 of 13) MLT1N2|LTR|ERVL-MaLR -302829 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 218.5-19 chr2 76618364 76618742 + 0.75 NA Intergenic AluJb|SINE|Alu -367412 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 172.75-57 chr6 40500219 40500604 + 0.75 NA intron (NM_020737, intron 1 of 2) LTR33|LTR|ERVL 86953 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 148.75-104 chr8 135238776 135239001 + 0.75 NA intron (NR_120396, intron 1 of 4) intron (NR_120396, intron 1 of 4) 4757 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 164.75-90 chr8 93198711 93199015 + 0.75 NA Intergenic Intergenic -32013 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 163.75-54 chr4 125472123 125472453 + 0.75 NA intron (NM_001291303, intron 11 of 16) intron (NM_001291303, intron 11 of 16) -34971 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 177.75-41 chr22 33777289 33777567 + 0.75 NA intron (NM_001362953, intron 1 of 14) AluJb|SINE|Alu 52442 NR_038950 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 171-17 chr14 22459862 22460229 + 0.75 NA intron (NR_148361, intron 2 of 4) intron (NR_148361, intron 2 of 4) 22914 NR_148361 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 198-18 chr20 42952319 42952663 + 0.75 NA intron (NM_133170, intron 1 of 31) MIR|SINE|MIR -16252 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 177-44 chr4 14197192 14197596 + 0.75 NA Intergenic L2b|LINE|L2 85426 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 186.75-66 chr4 95147162 95147548 + 0.75 NA intron (NM_001256792, intron 8 of 10) intron (NM_001256792, intron 8 of 10) 55864 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 167-9 chr10 66185066 66185571 + 0.75 NA intron (NM_001127384, intron 13 of 17) Charlie17|DNA|hAT-Charlie 613893 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 156.75-61 chr21 27135664 27136022 + 0.75 NA Intergenic Intergenic -168755 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 175.25 chr1 41932076 41932402 + 0.75 NA intron (NR_038261, intron 1 of 3) L1MEc|LINE|L1 -13317 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 236.25-18 chr20 49066773 49067382 + 0.75 NA intron (NM_001362762, intron 5 of 24) intron (NM_001362762, intron 5 of 24) 20765 NM_001362762 1434 Hs.90073 NM_001316 ENSG00000124207 CSE1L CAS|CSE1|XPO2 chromosome segregation 1 like protein-coding 183.5-71 chr8 71655664 71656082 + 0.75 NA Intergenic L1M2|LINE|L1 -107779 NM_001370333 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 256-3 chr11 118976054 118976641 + 0.75 NA intron (NM_181721, intron 1 of 5) AluJb|SINE|Alu 4586 NM_181721 283150 Hs.116679 NM_181721 ENSG00000176302 FOXR1 DLNB13|FOXN5 forkhead box R1 protein-coding 268.25-18 chr3 184825357 184825881 + 0.75 NA intron (NM_001009921, intron 2 of 46) intron (NM_001009921, intron 2 of 46) 13112 NR_146115 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 147.75-74 chr4 29913839 29914070 + 0.75 NA Intergenic Intergenic 699662 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 242-6 chr11 116288356 116288832 + 0.75 NA Intergenic MIRc|SINE|MIR -350828 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 193.5-67 chr6 65651703 65652185 + 0.75 NA intron (NM_001292009, intron 1 of 43) intron (NM_001292009, intron 1 of 43) 55281 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 172-77 chr6 79020920 79021311 + 0.75 NA intron (NM_017934, intron 9 of 39) intron (NM_017934, intron 9 of 39) 57139 NM_017934 55023 Hs.511817 NM_017934 ENSG00000146247 PHIP BRWD2|DCAF14|DIDOD|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 177.5-54 chr8 68168447 68168726 + 0.75 NA intron (NM_024870, intron 35 of 39) intron (NM_024870, intron 35 of 39) -161787 NM_001195639 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 176-35 chr2 170320669 170321078 + 0.75 NA intron (NM_001083615, intron 7 of 33) L1M5|LINE|L1 30070 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 165-28 chr14 61153575 61153938 + 0.75 NA Intergenic Intergenic 127582 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 242.25-20 chr7 28092753 28093187 + 0.75 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -87487 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 162.75-58 chr4 167031767 167032259 + 0.75 NA intron (NM_001204354, intron 2 of 9) intron (NM_001204354, intron 2 of 9) 202413 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 174.5-37 chr2 27953255 27953565 + 0.75 NA intron (NM_199193, intron 4 of 13) AluJo|SINE|Alu -42957 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 196-27 chr2 173999544 174000133 + 0.75 NA Intergenic Intergenic -25442 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 172.75-33 chr2 22793439 22793834 + 0.75 NA Intergenic Intergenic 257157 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 336.5-3 chr2 198357506 198358001 + 0.75 NA intron (NR_110267, intron 2 of 2) intron (NR_110267, intron 2 of 2) 17344 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 205.75-34 chr2 148582475 148582894 + 0.75 NA Intergenic Intergenic -62067 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 215-34 chr8 30692064 30692490 + 0.75 NA intron (NM_001195102, intron 7 of 11) AluSp|SINE|Alu -34041 NM_002095 2961 Hs.77100 NM_002095 ENSG00000197265 GTF2E2 FE|TF2E2|TFIIE-B|TTD6 general transcription factor IIE subunit 2 protein-coding 240-28 chr8 82726893 82727366 + 0.75 NA Intergenic L1PA16|LINE|L1 -184975 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 229.5-33 chr6 54885330 54885713 + 0.75 NA intron (NM_001010872, intron 2 of 4) L1M5|LINE|L1 38750 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 160-2 chr1 72468077 72468351 + 0.75 NA Intergenic L1MEh|LINE|L1 -185675 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 192.75-6 chr10 60043357 60043700 + 0.75 NA intron (NM_001204403, intron 42 of 43) intron (NM_001204403, intron 42 of 43) -82615 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 161.5-98 chr9 117996785 117997082 + 0.75 NA Intergenic Intergenic 292530 NM_003266 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 161.75-13 chr13 64159484 64159770 + 0.75 NA Intergenic LTR24|LTR|ERV1 -83616 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 197.75-52 chr5 31523150 31523444 + 0.75 NA intron (NM_013235, intron 4 of 34) intron (NM_013235, intron 4 of 34) 8796 NM_013235 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 155.5-46 chr2 69820460 69820670 + 0.75 NA intron (NM_001320700, intron 11 of 12) intron (NM_001320700, intron 11 of 12) -9095 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 227.75-13 chr17 61924752 61925276 + 0.75 NA exon (NM_020748, exon 3 of 25) exon (NM_020748, exon 3 of 25) 2968 NM_020748 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 148-71 chr4 143777090 143777416 + 0.75 NA Intergenic Intergenic 52095 NR_134680 105377458 Hs.738046 NR_134680 LOC105377458 - uncharacterized LOC105377458 ncRNA 166.75-66 chr4 182874100 182874400 + 0.75 NA Intergenic Intergenic 43003 NM_001351747 1635 Hs.183850 NM_001921 ENSG00000129187 DCTD - dCMP deaminase protein-coding 167.25-51 chr3 177800763 177801077 + 0.75 NA Intergenic L1PA16|LINE|L1 -15945 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 191.75-64 chr8 85838005 85838565 + 0.75 NA Intergenic L1ME4b|LINE|L1 -10343 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 171.75-61 chr4 162354301 162354595 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL -190414 NM_001128427 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 150.25-16 chr10 105906457 105906721 + 0.75 NA Intergenic Intergenic -86256 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 209.5-18 chr15 68352736 68353207 + 0.75 NA intron (NM_001004439, intron 7 of 29) intron (NM_001004439, intron 7 of 29) 75226 NM_015322 10116 Hs.362733 NM_015322 ENSG00000169018 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog B protein-coding 145.75-57 chr2 100911615 100912069 + 0.75 NA intron (NM_002518, intron 2 of 20) AluSz|SINE|Alu 65319 NR_110213 101927142 Hs.656556 NR_110213 LOC101927142 - uncharacterized LOC101927142 ncRNA 153.25-93 chr5 46025410 46025660 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -329155 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 177.75-70 chr8 33424041 33424411 + 0.75 NA intron (NM_032664, intron 3 of 4) MIRb|SINE|MIR 48920 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 236.25-7 chr11 13814344 13814891 + 0.75 NA intron (NR_149108, intron 3 of 3) Tigger5b|DNA|TcMar-Tigger 30231 NR_149108 105376562 Hs.577257 NR_149108 ENSG00000255411 LINC02548 - long intergenic non-protein coding RNA 2548 ncRNA 193-10 chr11 4866171 4866546 + 0.75 NA Intergenic L1M4a1|LINE|L1 -5695 NM_001348291 401663 NM_001348291 OR51H1 OR51H1P olfactory receptor family 51 subfamily H member 1 protein-coding 278.25-18 chr8 77355079 77355518 + 0.75 NA Intergenic L1MDa|LINE|L1 -95399 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 165.5 chr1 9582552 9582819 + 0.75 NA 3' UTR (NM_032315, exon 7 of 7) 3' UTR (NM_032315, exon 7 of 7) -6226 NM_001130924 199953 Hs.632365 NM_001010866 ENSG00000188807 TMEM201 Ima1|NET5|SAMP1 transmembrane protein 201 protein-coding 160.25-61 chr5 120056062 120056299 + 0.75 NA Intergenic Intergenic -408098 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 172.25-36 chr2 238381479 238381858 + 0.75 NA intron (NM_001139490, intron 13 of 14) intron (NM_001139490, intron 13 of 14) -45259 NM_001330196 51665 Hs.516788 NM_016114 ENSG00000065802 ASB1 ASB-1 ankyrin repeat and SOCS box containing 1 protein-coding 211.75-10 chr13 91205105 91205549 + 0.75 NA intron (NR_047004, intron 1 of 3) L1MEd|LINE|L1 6371 NR_047004 100874150 Hs.711947 NR_047004 LINC00379 - long intergenic non-protein coding RNA 379 ncRNA 284.75-17 chr7 83612673 83613180 + 0.75 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 28505 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 171.5-43 chr2 50613212 50613616 + 0.75 NA intron (NM_001330093, intron 8 of 22) intron (NM_001330093, intron 8 of 22) 82848 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 176.75-29 chr2 11114601 11114995 + 0.75 NA intron (NR_040080, intron 6 of 8) L1MB1|LINE|L1 17378 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 236-36 chr8 121808104 121808509 + 0.75 NA Intergenic Intergenic -166866 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 236.5-17 chr2 230349695 230350088 + 0.75 NA intron (NM_001352892, intron 2 of 18) AluSz|SINE|Alu 22720 NM_001352893 93349 Hs.589661 NM_138402 ENSG00000185404 SP140L - SP140 nuclear body protein like protein-coding 269.25-22 chr8 112367022 112367416 + 0.75 NA intron (NM_001363185, intron 34 of 66) intron (NM_001363185, intron 34 of 66) -276274 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 194.25 chr1 51438241 51438640 + 0.75 NA intron (NM_001981, intron 12 of 24) intron (NM_001981, intron 12 of 24) -16345 NM_001159969 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 292.75-7 chr5 87520833 87521333 + 0.75 NA Intergenic L1MB5|LINE|L1 -108050 NM_001363539 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 149.75-52 chr3 19620217 19620557 + 0.75 NA Intergenic L1MA1|LINE|L1 -305456 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 166.75-27 chr14 59752481 59752892 + 0.75 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) -105666 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 167.5-90 chr7 119239576 119239991 + 0.75 NA Intergenic Intergenic 667592 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 176.75-40 chr2 214407974 214408326 + 0.75 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -2904 NR_159945 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 198.25-35 chr4 32242584 32243124 + 0.75 NA Intergenic Intergenic -108184 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 354.5-2 chr15 63167566 63168141 + 0.75 NA Intergenic L3|LINE|CR1 -10376 NM_015920 51065 Hs.108957 NM_015920 ENSG00000185088 RPS27L - ribosomal protein S27 like protein-coding 174-22 chr15 81083822 81084213 + 0.75 NA Intergenic Intergenic -50253 NM_173528 161502 Hs.130979 NM_173528 ENSG00000156206 CFAP161 C15orf26 cilia and flagella associated protein 161 protein-coding 233-21 chr22 34378471 34378926 + 0.75 NA Intergenic Intergenic -455810 NM_001362951 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 148-37 chr17 55067199 55067582 + 0.75 NA intron (NM_178509, intron 12 of 17) intron (NM_178509, intron 12 of 17) -98605 NM_001321518 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 195.75-72 chr9 118617097 118617444 + 0.75 NA Intergenic Intergenic -62401 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 147-73 chr3 176905249 176905634 + 0.75 NA Intergenic CR1-16_AMi|LINE|CR1 -88440 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 216.5-41 chr8 28782503 28782959 + 0.75 NA intron (NR_026826, intron 9 of 14) AluJo|SINE|Alu 81230 NM_001440 2137 Hs.491354 NM_001440 ENSG00000012232 EXTL3 BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR exostosin like glycosyltransferase 3 protein-coding 300.5-17 chr9 70191660 70192285 + 0.75 NA intron (NM_153267, intron 11 of 13) L1MEg|LINE|L1 -16084 NR_040076 100507244 Hs.556816 NR_040076 ENSG00000204706 MAMDC2-AS1 - MAMDC2 antisense RNA 1 ncRNA 198-12 chr18 2930050 2930540 + 0.75 NA intron (NM_014646, intron 9 of 19) intron (NM_014646, intron 9 of 19) 16328 NR_026659 727896 Hs.673126 NR_026659 LOC727896 - cysteine and histidine rich domain containing 1 pseudogene pseudo 219.25-36 chr4 47750576 47750999 + 0.75 NA intron (NM_006587, intron 4 of 21) LTR33|LTR|ERVL -80558 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 167 chr1 65564850 65565210 + 0.75 NA intron (NM_001198687, intron 1 of 18) intron (NM_001198687, intron 1 of 18) 39341 NM_001198689 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 200-21 chr16 68567774 68568234 + 0.75 NA TTS (NR_130978) TTS (NR_130978) 28713 NM_133458 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 202.5-54 chr6 45328028 45328638 + 0.75 NA promoter-TSS (NM_001024630) promoter-TSS (NM_001024630) 3 NM_001024630 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 183-55 chr8 118958214 118958563 + 0.75 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) 6125 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 206-33 chr7 68273747 68274154 + 0.75 NA Intergenic ERVL-B4-int|LTR|ERVL 253697 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 252-11 chr7 41206033 41206417 + 0.75 NA Intergenic Intergenic 104621 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 201.25-27 chr2 220962844 220963367 + 0.75 NA Intergenic Intergenic 609199 NM_004438 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 187.25-66 chr8 56130032 56130547 + 0.75 NA Intergenic AluSg|SINE|Alu -16307 NM_005372 4342 Hs.533432 NM_005372 ENSG00000172680 MOS MSV MOS proto-oncogene, serine/threonine kinase protein-coding 203.5-38 chr3 9877405 9877858 + 0.75 NA intron (NM_001199551, intron 2 of 6) AluSz|SINE|Alu 1181 NM_001199623 63924 Hs.567562 NM_022094 ENSG00000187288 CIDEC CIDE-3|CIDE3|FPLD5|FSP27 cell death inducing DFFA like effector c protein-coding 207.5-10 chr11 95974743 95975116 + 0.75 NA Intergenic Intergenic -50722 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 185.25 chr1 16480550 16480943 + 0.75 NA intron (NR_023386, intron 10 of 14) AluSx1|SINE|Alu 11955 NR_023386 114819 Hs.597881 NR_023386 ENSG00000080947 CROCCP3 CROCCL2|dJ798A10.2 CROCC pseudogene 3 pseudo 188.25-19 chr16 79990938 79991588 + 0.75 NA Intergenic Intergenic 196014 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 179.5-9 chr10 62623893 62624288 + 0.75 NA intron (NM_199451, intron 5 of 7) intron (NM_199451, intron 5 of 7) 103642 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 197.5-61 chr9 32530757 32531093 + 0.75 NA Intergenic L1ME2|LINE|L1 -4729 NM_014314 23586 Hs.190622 NM_014314 ENSG00000107201 DDX58 RIG-I|RIG1|RIGI|RLR-1|SGMRT2 DExD/H-box helicase 58 protein-coding 173.25 chr1 116130053 116130520 + 0.75 NA intron (NM_152367, intron 6 of 6) intron (NM_152367, intron 6 of 6) 18531 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 243-13 chr2 199394639 199395237 + 0.75 NA TTS (NR_134967) TTS (NR_134967) 63001 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 195.25-41 chr3 178419691 178420220 + 0.75 NA intron (NR_046786, intron 1 of 2) intron (NR_046786, intron 1 of 2) 754 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 220.75-18 chr2 145404990 145405657 + 0.75 NA Intergenic Intergenic 737356 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 164.5-57 chr4 60486466 60486789 + 0.75 NA Intergenic L1MCb|LINE|L1 -435992 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 199.5-31 chr3 110583742 110584039 + 0.75 NA Intergenic Intergenic 486069 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 165-62 chr4 63665056 63665551 + 0.75 NA Intergenic L1PREC2|LINE|L1 744147 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 165-16 chr11 108970717 108971166 + 0.75 NA Intergenic Intergenic 305872 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 230-16 chr2 102214063 102214412 + 0.75 NA intron (NM_001351447, intron 4 of 9) L1M5|LINE|L1 26923 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 195.25-5 chr12 16419608 16420041 + 0.75 NA Intergenic Intergenic 66407 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 271-11 chr7 8925461 8925999 + 0.75 NA Intergenic Intergenic 492121 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 196.25-54 chrX 100029587 100030083 + 0.75 NA Intergenic L3|LINE|CR1 380438 NM_001105243 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 174-64 chr7 55838809 55839201 + 0.75 NA intron (NM_207366, intron 5 of 9) Tigger7|DNA|TcMar-Tigger 23747 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 162.75-69 chr6 72339196 72339497 + 0.75 NA intron (NM_001350433, intron 21 of 25) L1PA4|LINE|L1 -27400 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 190.25-50 chr7 17703160 17703470 + 0.75 NA Intergenic L1MA9|LINE|L1 -144406 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 238.25-2 chr10 20169631 20170067 + 0.75 NA intron (NM_032812, intron 7 of 13) intron (NM_032812, intron 7 of 13) 353417 NM_032812 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 192-58 chr9 116320843 116321353 + 0.75 NA intron (NM_002581, intron 10 of 21) AluYk4|SINE|Alu 79508 NR_103711 493913 Hs.728832 NR_103711 ENSG00000256040 PAPPA-AS1 DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105 PAPPA antisense RNA 1 ncRNA 212-23 chr2 230460321 230460608 + 0.75 NA intron (NM_001080391, intron 8 of 28) intron (NM_001080391, intron 8 of 28) 43708 NM_001206704 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 170.5-66 chr7 17632417 17632838 + 0.75 NA Intergenic L2c|LINE|L2 -73718 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 152.5-18 chr12 34496969 34497244 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 474610 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 241.75-4 chr10 94412596 94413021 + 0.75 NA intron (NM_015188, intron 1 of 12) intron (NM_015188, intron 1 of 12) 10267 NM_015188 23232 Hs.500598 NM_015188 ENSG00000108239 TBC1D12 - TBC1 domain family member 12 protein-coding 187-29 chr3 24928851 24929260 + 0.75 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 99732 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 321.5-7 chr8 84004080 84004741 + 0.75 NA Intergenic Intergenic -178377 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 167-97 chr9 100676353 100676826 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR 98510 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 147 chr1 27257276 27257568 + 0.75 NA intron (NM_001276252, intron 1 of 15) intron (NM_001276252, intron 1 of 15) 22790 NM_001276252 23038 Hs.469154 NM_015023 ENSG00000142784 WDTC1 ADP|DCAF9 WD and tetratricopeptide repeats 1 protein-coding 192.75-52 chr5 43590993 43591408 + 0.75 NA intron (NR_073113, intron 1 of 2) MIR|SINE|MIR -11475 NM_012343 23530 Hs.482043 NM_012343 ENSG00000112992 NNT GCCD4 nicotinamide nucleotide transhydrogenase protein-coding 174.25-56 chr5 166898021 166898324 + 0.75 NA Intergenic Intergenic 28198 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 149.75-30 chr17 58130235 58130459 + 0.75 NA Intergenic Intergenic -24807 NM_012374 26689 Hs.531188 NM_012374 ENSG00000141194 OR4D1 OR17-23|OR4D3|OR4D4P|TPCR16 olfactory receptor family 4 subfamily D member 1 protein-coding 272.75-2 chr1 230064803 230065465 + 0.75 NA intron (NM_001291866, intron 1 of 15) L1MC4|LINE|L1 -2061 NR_120373 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 294-5 chr6 128627621 128628112 + 0.75 NA Intergenic L2a|LINE|L2 -107267 NM_001291983 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 155-111 chr8 134987063 134987353 + 0.75 NA Intergenic Intergenic 137273 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 212.75-16 chr2 168953235 168953586 + 0.75 NA intron (NM_003742, intron 19 of 27) L1PB4|LINE|L1 52119 NM_001081686 57818 Hs.283963 NM_021176 ENSG00000152254 G6PC2 IGRP glucose-6-phosphatase catalytic subunit 2 protein-coding 205.25-34 chr6 21075106 21075532 + 0.75 NA intron (NM_017774, intron 12 of 15) intron (NM_017774, intron 12 of 15) 436573 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 172.5-12 chr11 73656987 73657429 + 0.75 NA intron (NM_021200, intron 6 of 7) intron (NM_021200, intron 6 of 7) 8295 NM_001130036 58473 Hs.445489 NM_021200 ENSG00000021300 PLEKHB1 KPL1|PHR1|PHRET1 pleckstrin homology domain containing B1 protein-coding 146.25-27 chr14 45148674 45149007 + 0.75 NA exon (NM_020937, exon 4 of 23) exon (NM_020937, exon 4 of 23) 12901 NM_001308134 57697 Hs.509229 NM_020937 ENSG00000187790 FANCM FAAP250|KIAA1596|POF15|SPGF28 FA complementation group M protein-coding 221.75-28 chr4 65527790 65528186 + 0.75 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 141500 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 232.25-13 chr13 113508145 113508797 + 0.75 NA intron (NM_001349746, intron 6 of 10) intron (NM_001349746, intron 6 of 10) 17450 NM_001349746 55002 Hs.317593 NM_017905 ENSG00000150403 TMCO3 C13orf11 transmembrane and coiled-coil domains 3 protein-coding 164.5-8 chr11 21393617 21394019 + 0.75 NA intron (NM_201551, intron 15 of 18) intron (NM_201551, intron 15 of 18) 724232 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 177.75-42 chr22 36547473 36547961 + 0.75 NA Intergenic Intergenic -18551 NR_156418 8664 Hs.55682 NM_003753 ENSG00000100353 EIF3D EIF3S7|eIF3-p66|eIF3-zeta eukaryotic translation initiation factor 3 subunit D protein-coding 209.5-2 chr1 86197469 86197868 + 0.75 NA Intergenic Intergenic -40684 NR_146340 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 292-2 chr18 62478762 62479424 + 0.75 NA Intergenic L1MC5|LINE|L1 -43932 NM_017742 54877 Hs.114191 NM_017742 ENSG00000141664 ZCCHC2 C18orf49 zinc finger CCHC-type containing 2 protein-coding 236.5-37 chr8 103382713 103383082 + 0.75 NA TTS (NM_001256099) TTS (NM_001256099) 10390 NM_001256099 115908 Hs.405614 NM_138455 ENSG00000164932 CTHRC1 - collagen triple helix repeat containing 1 protein-coding 210.75-3 chr1 163278547 163278900 + 0.75 NA intron (NM_001254748, intron 2 of 5) L1MA5|LINE|L1 43068 NM_001254748 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 327.5-3 chr14 60484600 60485445 + 0.75 NA intron (NM_174978, intron 2 of 17) intron (NM_174978, intron 2 of 17) 1041 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 222-19 chr4 111662869 111663262 + 0.75 NA Intergenic Intergenic -482389 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 231.25-36 chr8 77671102 77671478 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR 220593 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 151.5-55 chr2 195239840 195240163 + 0.75 NA Intergenic Intergenic -416957 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 195.75-3 chr1 224418766 224419172 + 0.75 NA intron (NM_025160, intron 5 of 13) intron (NM_025160, intron 5 of 13) 15330 NM_025160 80232 Hs.497873 NM_025160 ENSG00000162923 WDR26 CDW2|GID7|MIP2|SKDEAS WD repeat domain 26 protein-coding 230.25-30 chr8 135925115 135925433 + 0.75 NA Intergenic MIR|SINE|MIR 467818 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 173-10 chr1 196198059 196198517 + 0.75 NA Intergenic L2a|LINE|L2 -109573 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 187.25 chr1 26718429 26718698 + 0.75 NA intron (NM_139135, intron 1 of 19) MER2|DNA|TcMar-Tigger 22548 NM_006015 8289 Hs.468972 NM_006015 ENSG00000117713 ARID1A B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 AT-rich interaction domain 1A protein-coding 171.25-65 chr8 127856575 127856880 + 0.75 NA intron (NR_003367, intron 1 of 8) MIR|SINE|MIR 60765 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 173-54 chr4 40245593 40245860 + 0.75 NA TTS (NM_001278367) TTS (NM_001278367) 48695 NM_004310 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 205.5-42 chr7 49710690 49711149 + 0.75 NA Intergenic Intergenic -62719 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 150.25-61 chr3 13738913 13739175 + 0.75 NA intron (NR_027103, intron 5 of 5) Tigger1|DNA|TcMar-Tigger 88323 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 185-34 chr2 9920678 9921191 + 0.75 NA intron (NM_001318977, intron 13 of 13) intron (NM_001318977, intron 13 of 13) -30759 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 272.75-17 chr4 48700291 48700738 + 0.75 NA intron (NM_015030, intron 2 of 63) intron (NM_015030, intron 2 of 63) 79785 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 215.25-39 chr6 9633060 9633545 + 0.75 NA Intergenic Intergenic -771200 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 146-86 chr7 34592742 34593051 + 0.75 NA intron (NR_033664, intron 2 of 4) intron (NR_033664, intron 2 of 4) -65322 NM_207172 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 196.5-24 chr2 60970217 60970696 + 0.75 NA intron (NM_144709, intron 5 of 17) intron (NM_144709, intron 5 of 17) 46756 NM_001322124 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridine synthase 10 protein-coding 199-22 chr3 12101140 12101707 + 0.75 NA intron (NM_133625, intron 1 of 12) L1MB7|LINE|L1 57489 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 178.25-72 chr8 100658315 100658603 + 0.75 NA Intergenic Intergenic -8794 NM_152628 169166 Hs.567758 NM_152628 ENSG00000174226 SNX31 - sorting nexin 31 protein-coding 275.75-4 chr10 96529957 96530493 + 0.75 NA intron (NM_020123, intron 11 of 14) intron (NM_020123, intron 11 of 14) -16299 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 162.25-63 chr4 112829212 112829572 + 0.75 NA intron (NM_001354275, intron 1 of 43) FLAM_C|SINE|Alu 11395 NM_001354276 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 168-8 chr1 202749168 202749493 + 0.75 NA intron (NM_001314042, intron 14 of 27) AluJb|SINE|Alu -38876 NM_177402 127833 Hs.25422 NM_177402 ENSG00000143858 SYT2 CMS7|MYSPC|SytII synaptotagmin 2 protein-coding 148.5-39 chr19 56924754 56925197 + 0.75 NA Intergenic Intergenic 84073 NR_024059 100073347 Hs.467337 NR_024059 ENSG00000268654 MIMT1 LINC00067|MIM1|NCRNA00067 MER1 repeat containing imprinted transcript 1 ncRNA 250.75-15 chr2 34944067 34944583 + 0.75 NA Intergenic L1M5|LINE|L1 266768 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 186.25-21 chr19 32438436 32438813 + 0.75 NA intron (NM_207325, intron 6 of 18) L2c|LINE|L2 32499 NM_207325 147991 Hs.194392 NM_207325 ENSG00000178904 DPY19L3 - dpy-19 like C-mannosyltransferase 3 protein-coding 197.25-44 chr7 10192015 10192528 + 0.75 NA Intergenic Intergenic -510405 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 179.5-56 chr4 76442600 76443046 + 0.75 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) 7594 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 342.5-5 chr5 15667077 15667718 + 0.75 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -52395 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 202.25-16 chr12 114486611 114487020 + 0.75 NA Intergenic Intergenic -78373 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 155.75-56 chr2 104064552 104064946 + 0.75 NA Intergenic Intergenic 343583 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 160.75-71 chr20 59905690 59906083 + 0.75 NA intron (NM_014258, intron 15 of 44) L1MD|LINE|L1 27751 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 156.5-104 chr7 91935109 91935457 + 0.75 NA Intergenic L1MA4|LINE|L1 -5579 NM_147185 10142 Hs.651221 NM_005751 ENSG00000127914 AKAP9 AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO A-kinase anchoring protein 9 protein-coding 390.75 chr10 65304514 65305397 + 0.75 NA Intergenic AluJb|SINE|Alu -266470 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 341.5 chr1 70652252 70652825 + 0.75 NA Intergenic L1ME3G|LINE|L1 -53915 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 152.5-53 chr2 117236604 117236895 + 0.75 NA Intergenic L1PA16|LINE|L1 -577942 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 197.25-19 chr15 52151272 52151734 + 0.75 NA intron (NM_006578, intron 2 of 10) intron (NM_006578, intron 2 of 10) 28422 NM_006578 10681 Hs.155090 NM_006578 ENSG00000069966 GNB5 GB5|IDDCA|LADCI G protein subunit beta 5 protein-coding 336.25-5 chr22 34720289 34720991 + 0.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 277276 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 185.25-23 chr14 66882652 66882939 + 0.75 NA intron (NM_001024218, intron 5 of 21) L1MEf|LINE|L1 -306645 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 169.25-60 chr9 29218976 29219280 + 0.75 NA Intergenic MIR|SINE|MIR -5527 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 172-19 chr12 107231388 107231914 + 0.75 NA Intergenic L3|LINE|CR1 -86783 NM_001347943 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 226.75-26 chr8 131076643 131077123 + 0.75 NA Intergenic L2c|LINE|L2 -35974 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 148-3 chr1 62330064 62330309 + 0.75 NA Intergenic L3|LINE|CR1 -10752 NM_181712 163782 Hs.283398 NM_181712 ENSG00000132854 KANK4 ANKRD38|dJ1078M7.1 KN motif and ankyrin repeat domains 4 protein-coding 160-74 chr6 65064446 65064734 + 0.75 NA intron (NM_001292009, intron 12 of 43) (TA)n|Simple_repeat|Simple_repeat -236828 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 183.25-67 chr7 6469964 6470448 + 0.75 NA intron (NM_001100603, intron 2 of 3) MER6|DNA|TcMar-Tigger 13946 NM_006854 11014 Hs.654552 NM_006854 ENSG00000136240 KDELR2 ELP-1|ERD2.2 KDEL endoplasmic reticulum protein retention receptor 2 protein-coding 211.25-28 chr20 58287632 58287940 + 0.75 NA intron (NR_003505, intron 2 of 16) intron (NR_003505, intron 2 of 16) 21653 NR_003505 55370 Hs.473179 NM_018498 PPP4R1L C20orf192|PPP4R1P1|PRO1085 protein phosphatase 4 regulatory subunit 1 like (pseudogene) pseudo 311.25-3 chr17 66624905 66625455 + 0.75 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) -161892 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 148.25-80 chr6 125368715 125369058 + 0.75 NA Intergenic Intergenic -66919 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 161.75-53 chr3 154724609 154724855 + 0.75 NA Intergenic Intergenic -294542 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 154-94 chr6 138086325 138086716 + 0.75 NA Intergenic Intergenic 20899 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 167-67 chr5 28424256 28424526 + 0.75 NA Intergenic Intergenic -136726 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 220.25-26 chr3 137469164 137469632 + 0.75 NA Intergenic MER33|DNA|hAT-Charlie -294917 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 248.25-12 chr3 96652505 96653112 + 0.75 NA Intergenic L1ME3A|LINE|L1 -161786 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 286.25-14 chr8 103740304 103741091 + 0.75 NA intron (NM_001348496, intron 3 of 23) Charlie2a|DNA|hAT-Charlie -78523 NM_001348503 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 208.75 chr1 75236176 75236495 + 0.75 NA intron (NM_001320283, intron 9 of 21) intron (NM_001320283, intron 9 of 21) 101947 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 203.5-44 chr3 100787078 100787614 + 0.75 NA intron (NM_001349331, intron 32 of 42) intron (NM_001349331, intron 32 of 42) 77804 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 287.75-6 chr17 27907541 27908002 + 0.75 NA Intergenic L2c|LINE|L2 -14406 NM_001076680 201229 Hs.687951 NM_001076680 ENSG00000232859 LYRM9 C17orf108|HSD24 LYR motif containing 9 protein-coding 171.5-84 chr6 44374321 44374664 + 0.75 NA intron (NM_145026, intron 7 of 8) L1MC4|LINE|L1 -13214 NM_001253 988 Hs.485471 NM_001253 ENSG00000096401 CDC5L CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1 cell division cycle 5 like protein-coding 301-11 chr8 116087562 116088234 + 0.75 NA intron (NR_046215, intron 7 of 13) AluSq2|SINE|Alu 237161 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 228.5-28 chr2 35936259 35936669 + 0.75 NA Intergenic L1M5|LINE|L1 419106 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 209.75-5 chr11 22132687 22133085 + 0.75 NA Intergenic L1PA15|LINE|L1 -60199 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 148-9 chr1 171758590 171758917 + 0.75 NA Intergenic MER83B-int|LTR|ERV1 -16688 NM_001185127 8674 Hs.6651 NM_003762 ENSG00000117533 VAMP4 VAMP-4|VAMP24 vesicle associated membrane protein 4 protein-coding 298.5 chr1 42518053 42518769 + 0.75 NA intron (NM_001355227, intron 6 of 18) L1MB3|LINE|L1 -14609 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 154.75-41 chr2 51934591 51934801 + 0.75 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -435952 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 213.25-47 chr8 30857530 30858183 + 0.75 NA intron (NR_146525, intron 6 of 6) L1ME3D|LINE|L1 30850 NR_146525 56154 Hs.458316 NM_001350162 ENSG00000133863 TEX15 CT42|SPGF25 testis expressed 15, meiosis and synapsis associated protein-coding 205.5-16 chr15 101712907 101713345 + 0.75 NA intron (NM_152334, intron 4 of 18) L2a|LINE|L2 11347 NM_152334 123283 Hs.657163 NM_152334 ENSG00000185418 TARSL2 - threonyl-tRNA synthetase like 2 protein-coding 151-28 chr17 62866861 62867108 + 0.75 NA Intergenic Intergenic 58482 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 187.25-9 chr10 58650593 58651096 + 0.75 NA intron (NM_001080512, intron 2 of 20) intron (NM_001080512, intron 2 of 20) -64171 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 168.75-96 chr7 158660484 158660970 + 0.75 NA intron (NM_001281932, intron 17 of 28) intron (NM_001281932, intron 17 of 28) 44077 NM_001281933 54892 Hs.18616 NM_017760 ENSG00000146918 NCAPG2 3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2 non-SMC condensin II complex subunit G2 protein-coding 155.75-85 chr5 116612070 116612324 + 0.75 NA TTS (NR_147170) TTS (NR_147170) -37374 NM_001300780 57556 Hs.156967 NM_020681 ENSG00000092421 SEMA6A HT018|SEMA|SEMA6A1|SEMAQ|VIA semaphorin 6A protein-coding 154-55 chr2 107183107 107183462 + 0.75 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 166241 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 270.5-8 chr2 53890 54298 + 0.75 NA Intergenic Intergenic -7589 NM_001077710 642273 Hs.8379 NM_001077710 ENSG00000184731 FAM110C - family with sequence similarity 110 member C protein-coding 179.25-71 chr7 99135902 99136354 + 0.75 NA intron (NM_020429, intron 1 of 18) FRAM|SINE|Alu 7980 NM_001199847 57154 Hs.189329 NM_020429 ENSG00000198742 SMURF1 - SMAD specific E3 ubiquitin protein ligase 1 protein-coding 147.75-13 chr1 224245147 224245393 + 0.75 NA intron (NM_002533, intron 19 of 22) intron (NM_002533, intron 19 of 22) 11840 NR_031574 100313769 NR_031574 ENSG00000221406 MIR320B2 MIR320B-2|MIRN320B2|mir-320b-2 microRNA 320b-2 ncRNA 178.5-59 chr7 85209254 85209609 + 0.75 NA Intergenic Intergenic -87500 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 287.5-17 chr5 143809704 143810173 + 0.75 NA Intergenic Charlie4a|DNA|hAT-Charlie -2223 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 264.5-19 chr4 59766040 59766466 + 0.75 NA Intergenic Intergenic 752680 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 304-6 chr8 109715879 109716590 + 0.75 NA Intergenic L1MB4|LINE|L1 -24443 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 241-19 chr20 34884839 34885399 + 0.75 NA intron (NM_001076552, intron 2 of 18) AluJb|SINE|Alu 8507 NM_018677 55902 Hs.517034 NM_018677 ENSG00000131069 ACSS2 ACAS2|ACECS|ACS|ACSA|dJ1161H23.1 acyl-CoA synthetase short chain family member 2 protein-coding 158.25-9 chr1 247966357 247966674 + 0.75 NA TTS (NM_001004491) TTS (NM_001004491) 1183 NM_001004491 391191 Hs.690413 NM_001004491 ENSG00000187080 OR2AK2 OR1-47|OR2AK1P olfactory receptor family 2 subfamily AK member 2 protein-coding 233-29 chr6 103049210 103049598 + 0.75 NA Intergenic Intergenic 1650419 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 157-31 chr14 36754753 36755099 + 0.75 NA intron (NM_001171170, intron 3 of 10) intron (NM_001171170, intron 3 of 10) 97358 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 234.5 chr10 84787230 84787854 + 0.75 NA Intergenic Intergenic 362373 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 153-57 chr3 152866249 152866565 + 0.75 NA Intergenic Intergenic 31276 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 149.5-19 chr12 100974176 100974565 + 0.75 NA intron (NM_001286616, intron 5 of 26) (ATATAT)n|Simple_repeat|Simple_repeat 72724 NM_001286616 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 147.5-91 chr6 146775745 146776148 + 0.75 NA intron (NM_024694, intron 29 of 35) intron (NM_024694, intron 29 of 35) 27878 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 180.5-20 chr14 82245644 82246055 + 0.75 NA Intergenic Intergenic -396783 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 248.25-3 chr11 25881313 25881832 + 0.75 NA Intergenic MSTD|LTR|ERVL-MaLR -307551 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 155.25-45 chr2 135214718 135215145 + 0.75 NA intron (NM_001286569, intron 18 of 21) intron (NM_001286569, intron 18 of 21) 78303 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 154.75-10 chr10 63243294 63243702 + 0.75 NA intron (NM_001322252, intron 2 of 24) AluSp|SINE|Alu 25725 NR_134512 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 176-51 chr4 124898886 124899154 + 0.75 NA Intergenic L1PA5|LINE|L1 -186288 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 162.5-38 chr2 3850020 3850257 + 0.75 NA Intergenic Intergenic 123894 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 193.5-2 chr1 61278924 61279511 + 0.75 NA intron (NM_001134673, intron 3 of 10) intron (NM_001134673, intron 3 of 10) -25699 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 400.5-3 chr5 156930991 156931728 + 0.75 NA intron (NM_001146726, intron 4 of 7) intron (NM_001146726, intron 4 of 7) 31867 NM_001146726 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 205-16 chr14 72861626 72862150 + 0.75 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 30761 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 169-44 chr3 164462208 164462705 + 0.75 NA Intergenic L1PA16|LINE|L1 -290900 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 175.75-6 chr10 31176788 31177144 + 0.75 NA Intergenic Intergenic -10917 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 210 chr1 119713273 119713628 + 0.75 NA intron (NM_006623, intron 1 of 11) intron (NM_006623, intron 1 of 11) 1516 NM_006623 26227 Hs.487296 NM_006623 ENSG00000092621 PHGDH 3-PGDH|3PGDH|HEL-S-113|NLS|NLS1|PDG|PGAD|PGD|PGDH|PHGDHD|SERA phosphoglycerate dehydrogenase protein-coding 169.5-62 chr4 30291024 30291473 + 0.75 NA Intergenic Intergenic -429121 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 160.25-22 chr14 51618697 51619086 + 0.75 NA intron (NM_001042481, intron 2 of 14) intron (NM_001042481, intron 2 of 14) -18939 NR_051990 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 155-80 chr5 101332443 101332728 + 0.75 NA Intergenic L1PREC2|LINE|L1 -429303 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 164.25-67 chr4 40324987 40325266 + 0.75 NA intron (NR_121640, intron 1 of 2) AluSz|SINE|Alu 8642 NR_121640 101060498 Hs.351492 NR_121640 ENSG00000249241 LINC02265 - long intergenic non-protein coding RNA 2265 ncRNA 199.5-48 chr7 129898451 129898936 + 0.75 NA intron (NM_001202498, intron 1 of 6) intron (NM_001202498, intron 1 of 6) 54267 NM_001202498 7328 Hs.643548 NM_003344 ENSG00000186591 UBE2H E2-20K|GID3|UBC8|UBCH|UBCH2 ubiquitin conjugating enzyme E2 H protein-coding 185.75-25 chr16 72727090 72727421 + 0.75 NA Intergenic Intergenic -62285 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 190-46 chr4 112749301 112749874 + 0.75 NA intron (NM_001354269, intron 1 of 43) intron (NM_001354269, intron 1 of 43) 43569 NM_001354269 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 194.5-43 chr4 86665846 86666320 + 0.75 NA intron (NM_080685, intron 2 of 47) MIR|SINE|MIR 71768 NM_080685 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 160.75-69 chr2 212355579 212355935 + 0.75 NA intron (NM_001042599, intron 1 of 26) (TA)n|Simple_repeat|Simple_repeat 70603 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 199.75-47 chr6 48783177 48783455 + 0.75 NA Intergenic L1MA2|LINE|L1 679937 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 207.5-47 chr9 135579251 135579762 + 0.75 NA intron (NR_034016, intron 3 of 5) (CATC)n|Simple_repeat|Simple_repeat 4581 NR_034017 100130954 Hs.550769 NR_034016 ENSG00000237339 LINC01502 - long intergenic non-protein coding RNA 1502 ncRNA 161-31 chr14 73091586 73091970 + 0.75 NA intron (NM_021239, intron 6 of 18) AluSx|SINE|Alu 33244 NM_021239 58517 Hs.531106 NM_021239 ENSG00000119707 RBM25 NET52|RED120|RNPC7|S164|Snu71|fSAP94 RNA binding motif protein 25 protein-coding 239.5-17 chr16 75008715 75009168 + 0.75 NA intron (NM_032268, intron 1 of 4) intron (NM_032268, intron 1 of 4) 9917 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 175.75-32 chr2 48639090 48639489 + 0.75 NA intron (NM_001198594, intron 4 of 7) L1PA14|LINE|L1 21433 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 154.5-37 chr16 77201845 77202180 + 0.75 NA 3' UTR (NM_001286639, exon 5 of 5) 3' UTR (NM_001286639, exon 5 of 5) 2604 NM_001129979 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 188.5-3 chr1 104718790 104719206 + 0.75 NA Intergenic L1MB7|LINE|L1 645975 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 164.5-41 chr2 216061424 216061867 + 0.75 NA intron (NM_018441, intron 3 of 7) L1MC4|LINE|L1 20164 NM_018441 55825 Hs.281680 NM_018441 ENSG00000115425 PECR DCRRP|HPDHASE|HSA250303|PVIARL|SDR29C1|TERP peroxisomal trans-2-enoyl-CoA reductase protein-coding 165.75-2 chr1 12350095 12350378 + 0.75 NA intron (NM_015378, intron 46 of 69) L1ME2|LINE|L1 120206 NM_018156 55187 Hs.439381 NM_015378 ENSG00000048707 VPS13D SCAR4 vacuolar protein sorting 13 homolog D protein-coding 194.5-27 chr16 11313606 11314076 + 0.75 NA Intergenic AluJo|SINE|Alu -7314 NR_031678 100313773 NR_031678 ENSG00000221801 MIR548H2 MIR548H-2|MIRN548H2 microRNA 548h-2 ncRNA 208.5-40 chr3 44146495 44147025 + 0.75 NA Intergenic Intergenic 32548 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 265.75-8 chr20 51987650 51988433 + 0.75 NA Intergenic AluJb|SINE|Alu 117443 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 237.5-6 chr14 29509639 29510226 + 0.75 NA Intergenic Intergenic 417164 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 238.75-8 chr12 17550000 17550473 + 0.75 NA Intergenic L1M3|LINE|L1 38842 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 200.25-39 chr5 22530443 22530800 + 0.75 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) -316771 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 148.5-90 chr7 81334814 81335255 + 0.75 NA Intergenic Intergenic 226785 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 185.75-21 chr14 82026539 82026944 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR -283603 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 149-19 chr13 93724762 93725080 + 0.75 NA intron (NM_005708, intron 2 of 8) intron (NM_005708, intron 2 of 8) 133552 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 242.25-7 chr17 9312121 9312586 + 0.75 NA intron (NM_004853, intron 7 of 7) AluSp|SINE|Alu -133235 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 159-74 chr6 120036730 120037142 + 0.75 NA Intergenic Intergenic 21757 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 219.75-10 chr11 95677545 95677915 + 0.75 NA Intergenic L1MA8|LINE|L1 112052 NM_001330357 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 176.5-61 chr4 105141373 105141655 + 0.75 NA Intergenic Intergenic -4361 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 146-8 chr1 208636964 208637295 + 0.75 NA Intergenic Intergenic -91559 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 185.5-8 chr1 183835405 183835810 + 0.75 NA intron (NM_001297671, intron 2 of 17) intron (NM_001297671, intron 2 of 17) 30487 NM_001297671 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 319.75-3 chr4 74810375 74811115 + 0.75 NA Intergenic Intergenic -16222 NM_001729 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 188.5-10 chr10 108058425 108058870 + 0.75 NA intron (NR_125760, intron 1 of 4) intron (NR_125760, intron 1 of 4) 10646 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 239.25-5 chr10 65676061 65676495 + 0.75 NA intron (NR_120647, intron 3 of 5) intron (NR_120647, intron 3 of 5) 104853 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 168.5-46 chr2 17387799 17388180 + 0.75 NA Intergenic Intergenic 130451 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 147.75-5 chr1 101617269 101617544 + 0.75 NA Intergenic Intergenic 229674 NM_001288821 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 160-5 chr1 112552963 112553403 + 0.75 NA intron (NM_017744, intron 12 of 14) intron (NM_017744, intron 12 of 14) 44218 NM_024494 7482 Hs.258575 NM_004185 ENSG00000134245 WNT2B WNT13 Wnt family member 2B protein-coding 153.5-10 chr1 237529357 237529692 + 0.75 NA intron (NM_001035, intron 24 of 104) intron (NM_001035, intron 24 of 104) 58405 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 156-15 chr11 133522008 133522320 + 0.75 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) 10337 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 164.5-79 chr6 68201469 68201768 + 0.75 NA Intergenic L1PA16|LINE|L1 128281 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 168-37 chr2 167906582 167906898 + 0.75 NA intron (NR_131227, intron 1 of 4) HAL1|LINE|L1 34404 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 176-67 chr8 132047234 132047693 + 0.75 NA intron (NM_001080399, intron 2 of 13) intron (NM_001080399, intron 2 of 13) 11919 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 189.75-19 chr10 94192390 94192737 + 0.75 NA intron (NM_001165979, intron 3 of 31) L1PA16|LINE|L1 -83769 NR_120616 101927049 Hs.144492 NR_120615 ENSG00000232913 PLCE1-AS2 - PLCE1 antisense RNA 2 ncRNA 168.25-29 chr18 65132381 65132719 + 0.75 NA Intergenic AluSx1|SINE|Alu -617702 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 175.25-32 chr2 15259050 15259453 + 0.75 NA intron (NR_052013, intron 44 of 50) intron (NR_052013, intron 44 of 50) 302083 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 156.5-35 chr14 71260067 71260549 + 0.75 NA Intergenic L1MEf|LINE|L1 -60168 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 192-39 chr3 114512813 114513250 + 0.75 NA intron (NR_121662, intron 3 of 6) intron (NR_121662, intron 3 of 6) 59438 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 257.75-4 chr11 34126207 34126768 + 0.75 NA intron (NM_001144030, intron 9 of 26) intron (NM_001144030, intron 9 of 26) 20858 NM_001144030 55226 Hs.577281 NM_024662 ENSG00000135372 NAT10 ALP|Kre33|NET43 N-acetyltransferase 10 protein-coding 276-3 chr10 49435587 49436269 + 0.75 NA Intergenic AluSx1|SINE|Alu -39839 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 152-73 chr5 62536259 62536625 + 0.75 NA intron (NM_016338, intron 22 of 29) (ATTC)n|Simple_repeat|Simple_repeat -42293 NR_073584 101180901 Hs.482269 NR_073584 ENSG00000086200 IPO11-LRRC70 - IPO11-LRRC70 readthrough ncRNA 235.25-17 chr5 7739775 7740353 + 0.75 NA intron (NM_020546, intron 14 of 24) L1M5|LINE|L1 111069 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 240.75-8 chr14 80792633 80793086 + 0.75 NA non-coding (NR_157142, exon 14 of 25) non-coding (NR_157142, exon 14 of 25) 148879 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 193.75-10 chr11 26392844 26393229 + 0.75 NA intron (NM_031418, intron 1 of 26) intron (NM_031418, intron 1 of 26) 60906 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 180.25-79 chr8 132821974 132822420 + 0.75 NA intron (NM_001277196, intron 11 of 19) intron (NM_001277196, intron 11 of 19) -44761 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 196.5-44 chr5 103002747 103003178 + 0.75 NA intron (NM_001364590, intron 17 of 25) intron (NM_001364590, intron 17 of 25) 117176 NM_017676 54826 Hs.24088 NM_017676 ENSG00000145723 GIN1 GIN-1|TGIN1|ZH2C2 gypsy retrotransposon integrase 1 protein-coding 221-5 chr1 238053985 238054349 + 0.75 NA Intergenic LTR8B|LTR|ERV1 -163245 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 172.75-25 chr15 92181038 92181332 + 0.75 NA Intergenic Intergenic -212696 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 203.5-57 chr5 63496613 63497126 + 0.75 NA Intergenic MER5A|DNA|hAT-Charlie 465423 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 208.5-16 chr13 112879188 112879525 + 0.75 NA intron (NM_015205, intron 29 of 29) intron (NM_015205, intron 29 of 29) 89282 NR_034002 100289410 Hs.667436 NR_034002 MCF2L-AS1 - MCF2L antisense RNA 1 ncRNA 167.5 chr1 20677940 20678404 + 0.75 NA intron (NM_001122819, intron 11 of 14) THE1B|LTR|ERVL-MaLR -16628 NM_005216 1650 Hs.523145 NM_005216 ENSG00000244038 DDOST AGER1|CDG1R|GATD6|OKSWcl45|OST|OST48|WBP1 dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit protein-coding 151.25-105 chr9 76090245 76090615 + 0.75 NA intron (NR_120409, intron 7 of 19) intron (NR_120409, intron 7 of 19) 199757 NM_006200 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 179.25-78 chr8 140824998 140825471 + 0.75 NA intron (NR_148037, intron 9 of 34) L2b|LINE|L2 -92581 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 151.75-69 chr4 82218501 82218824 + 0.75 NA Intergenic Charlie4a|DNA|hAT-Charlie 155329 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 208.5-12 chr12 14322259 14322671 + 0.75 NA Intergenic Intergenic -43167 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 265.25-11 chr20 42731011 42731635 + 0.75 NA intron (NM_133170, intron 6 of 31) intron (NM_133170, intron 6 of 31) 45840 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 229.25-8 chr13 97351734 97352092 + 0.75 NA intron (NM_144778, intron 5 of 8) AluSz|SINE|Alu -82256 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 200.25-13 chr12 70750562 70751122 + 0.75 NA intron (NM_130846, intron 1 of 9) AluJo|SINE|Alu 3766 NM_130846 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 276.5-20 chrX 10803625 10804380 + 0.75 NA intron (NM_033290, intron 1 of 9) L1MCb|LINE|L1 29681 NM_033290 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 148.25-96 chr8 102491050 102491389 + 0.75 NA Intergenic AluJr4|SINE|Alu -60370 NM_024410 4956 Hs.159274 NM_024410 ENSG00000155087 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 209.25-40 chr6 153552905 153553297 + 0.75 NA Intergenic MIRb|SINE|MIR -421819 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 209.25-4 chr10 55351765 55352237 + 0.75 NA intron (NM_001354404, intron 2 of 34) MIRb|SINE|MIR -247041 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 230-22 chr4 61597513 61598072 + 0.75 NA intron (NM_001371343, intron 5 of 23) intron (NM_001371343, intron 5 of 23) 395620 NM_001371342 180.75-52 chr5 103206528 103206871 + 0.75 NA 3' UTR (NM_001345876, exon 29 of 29) 3' UTR (NM_001345876, exon 29 of 29) -52064 NM_033211 90355 Hs.482976 NM_033211 ENSG00000181751 C5orf30 - chromosome 5 open reading frame 30 protein-coding 209.5-50 chr8 99557716 99558311 + 0.75 NA intron (NM_017890, intron 31 of 61) intron (NM_017890, intron 31 of 61) -21152 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 264.75-10 chr3 144830312 144830857 + 0.75 NA Intergenic Intergenic 857503 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 211.75-18 chr20 15483174 15483694 + 0.75 NA intron (NM_001351663, intron 7 of 17) L1MCa|LINE|L1 286594 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 201.75-11 chr14 66934886 66935316 + 0.75 NA intron (NM_020806, intron 8 of 22) L3|LINE|CR1 -254339 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 287.5-12 chr2 80216172 80216739 + 0.75 NA intron (NM_001282598, intron 7 of 17) MLT1A0|LTR|ERVL-MaLR 88297 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 179.75-37 chr3 121420971 121421360 + 0.75 NA non-coding (NR_145516, exon 29 of 29) non-coding (NR_145516, exon 29 of 29) 124823 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 288-5 chr2 21170517 21171041 + 0.75 NA Intergenic Intergenic 46793 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 199-41 chr8 134006620 134007016 + 0.75 NA Intergenic Intergenic 120322 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 199.75-9 chr11 34010105 34010430 + 0.75 NA Intergenic AluJr|SINE|Alu -41464 NM_203364 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 208-11 chr14 50579525 50580057 + 0.75 NA intron (NM_015915, intron 1 of 13) MER63A|DNA|hAT-Blackjack 19766 NM_015915 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 184.75-16 chr12 3838026 3838277 + 0.75 NA intron (NM_020367, intron 1 of 7) L1M4b|LINE|L1 35248 NR_104461 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 196.25-46 chr6 11588975 11589288 + 0.75 NA Intergenic Intergenic 51382 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 149.5-41 chr2 49901945 49902345 + 0.75 NA Intergenic Intergenic 72058 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 196.25-22 chr15 93759836 93760208 + 0.75 NA Intergenic MIRb|SINE|MIR -96538 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 160.75-64 chr2 125845384 125845729 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 272429 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 145.75-113 chr7 36944003 36944364 + 0.75 NA intron (NM_001206480, intron 16 of 21) MIR|SINE|MIR -24751 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 160.5-114 chr8 119248182 119248546 + 0.75 NA Intergenic LTR16B1|LTR|ERVL -1507 NR_149112 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 363-2 chr3 96747578 96748301 + 0.75 NA Intergenic Intergenic -66655 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 177.5-10 chr11 8965311 8965563 + 0.75 NA promoter-TSS (NM_001286094) promoter-TSS (NM_001286094) -426 NM_001286095 56674 Hs.501853 NM_020644 ENSG00000175348 TMEM9B C11orf15 TMEM9 domain family member B protein-coding 153-7 chr10 26512832 26513341 + 0.75 NA intron (NM_019043, intron 7 of 14) intron (NM_019043, intron 7 of 14) 66221 NR_134472 101929117 Hs.127031 NR_134472 LOC101929117 - uncharacterized LOC101929117 ncRNA 151.25-90 chr8 74894573 74894868 + 0.75 NA Intergenic Tigger7|DNA|TcMar-Tigger 70186 NM_001324403 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 231.75-26 chr6 34527554 34528101 + 0.75 NA intron (NM_001199583, intron 3 of 9) L1MC4|LINE|L1 12955 NM_001199583 29993 Hs.520087 NM_020804 ENSG00000124507 PACSIN1 SDPI protein kinase C and casein kinase substrate in neurons 1 protein-coding 244.5-23 chr3 188470681 188471083 + 0.75 NA intron (NM_001167672, intron 2 of 9) intron (NM_001167672, intron 2 of 9) 97784 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 262-2 chr10 90539039 90539431 + 0.75 NA intron (NR_110657, intron 1 of 6) intron (NR_110657, intron 1 of 6) 1570 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 154.75-24 chr14 62094773 62095093 + 0.75 NA intron (NM_001367661, intron 8 of 8) intron (NM_001367661, intron 8 of 8) -22424 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 186.5-38 chr3 36330177 36330634 + 0.75 NA Intergenic Intergenic -50082 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 167.75-32 chr15 53983311 53983700 + 0.75 NA intron (NM_001329919, intron 1 of 31) intron (NM_001329919, intron 1 of 31) 5064 NM_001329919 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 247-8 chr13 86962368 86962841 + 0.75 NA Intergenic Intergenic 50684 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 176.5-57 chr4 35614350 35614739 + 0.75 NA Intergenic Intergenic 629395 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 151.5-7 chr1 195329193 195329599 + 0.75 NA Intergenic Intergenic 759319 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 153.5-3 chr1 91377187 91377543 + 0.75 NA intron (NM_001017975, intron 11 of 38) L2c|LINE|L2 27472 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 303.25 chr1 231562943 231563519 + 0.75 NA intron (NR_028398, intron 3 of 10) intron (NR_028398, intron 3 of 10) 34562 NM_005999 7257 Hs.13318 NM_005999 ENSG00000116918 TSNAX C3PO|TRAX translin associated factor X protein-coding 241.5-31 chr7 113108907 113109402 + 0.75 NA Intergenic Intergenic 9400 NM_001352688 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 149-22 chr14 41273684 41274059 + 0.75 NA Intergenic Intergenic 319160 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 239.25-13 chr2 57880686 57881055 + 0.75 NA Intergenic Intergenic -26781 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 252.75-25 chr5 43765104 43765753 + 0.75 NA Intergenic Intergenic -162198 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 223-4 chr10 82911895 82912387 + 0.75 NA intron (NR_163253, intron 6 of 10) L1MCa|LINE|L1 -679221 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 285.25-6 chr4 135351584 135352333 + 0.75 NA Intergenic Intergenic -228399 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 321.25-4 chr22 47897502 47898085 + 0.75 NA Intergenic L1ME3A|LINE|L1 266119 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 173.5-89 chr8 104304392 104304722 + 0.75 NA Intergenic MSTD|LTR|ERVL-MaLR -35239 NM_001257317 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 195.5-38 chr3 31906834 31907171 + 0.75 NA intron (NM_001174060, intron 1 of 10) intron (NM_001174060, intron 1 of 10) -74748 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 215.5-52 chr9 38234373 38234878 + 0.75 NA Intergenic Intergenic -158077 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 247.25-24 chr8 83137503 83138225 + 0.75 NA Intergenic Intergenic 225760 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 279.5-9 chr4 61458802 61459303 + 0.75 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 256880 NM_001371342 178.5-21 chr14 55892651 55893074 + 0.75 NA Intergenic Intergenic -96188 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 154-48 chr2 31658247 31658475 + 0.75 NA Intergenic L1PREC2|LINE|L1 -77423 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 178.25-65 chr7 85215249 85215611 + 0.75 NA Intergenic MIR|SINE|MIR -93499 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 209-6 chr10 9948035 9948436 + 0.75 NA Intergenic Intergenic -110487 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 189.75-46 chr3 35421377 35421846 + 0.75 NA Intergenic Intergenic -27588 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 344.25-6 chr4 171827392 171828357 + 0.75 NA intron (NM_001034845, intron 2 of 12) Tigger2b_Pri|DNA|TcMar-Tigger -14267 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 164.25-89 chr8 131641447 131641835 + 0.75 NA Intergenic Intergenic -262452 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 270.75-22 chr6 20602051 20602507 + 0.75 NA intron (NM_017774, intron 4 of 15) intron (NM_017774, intron 4 of 15) 67822 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 279.75-9 chr2 178528886 178529445 + 0.75 NA exon (NM_133432, exon 189 of 192) exon (NM_133432, exon 189 of 192) 5974 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 319.75 chr14 43002882 43003364 + 0.75 NA Intergenic HUERS-P3-int|LTR|ERV1 1396267 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 288 chr1 98569202 98569917 + 0.75 NA Intergenic Intergenic -92162 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 173.25-40 chr2 211500401 211500827 + 0.75 NA intron (NM_001042599, intron 20 of 26) intron (NM_001042599, intron 20 of 26) 883043 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 261.5-14 chr2 223679128 223679720 + 0.75 NA Intergenic AluSx|SINE|Alu -77063 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 164-72 chr6 155895311 155895643 + 0.75 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 -51320 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 207.25-3 chr1 154079357 154079680 + 0.75 NA intron (NM_001159484, intron 16 of 37) intron (NM_001159484, intron 16 of 37) 25074 NR_049883 100847024 NR_049883 ENSG00000263987 MIR5698 - microRNA 5698 ncRNA 204.75-9 chr12 15745389 15745959 + 0.75 NA intron (NM_004447, intron 1 of 20) intron (NM_004447, intron 1 of 20) 43714 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 213.25-25 chr21 32149303 32149589 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL -63151 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 286.5-4 chr12 11817128 11817759 + 0.75 NA intron (NM_001987, intron 2 of 7) intron (NM_001987, intron 2 of 7) 167589 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 163.5-64 chr20 6220049 6220458 + 0.75 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -96709 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 233.75-9 chr17 32787690 32788140 + 0.75 NA intron (NM_015194, intron 1 of 21) L1PB2|LINE|L1 89209 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 216.75-38 chr9 124689912 124690371 + 0.75 NA intron (NR_038975, intron 1 of 1) intron (NR_038975, intron 1 of 1) -2301 NR_029611 406954 NR_029611 ENSG00000207595 MIR181A2 MIRN181A|MIRN181A2|hsa-mir-181a-2|mir-181a-2 microRNA 181a-2 ncRNA 176.5-94 chr8 122392833 122393238 + 0.75 NA Intergenic MIRb|SINE|MIR 175609 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 157.25-45 chr2 46949783 46950049 + 0.75 NA intron (NM_001288951, intron 1 of 20) intron (NM_001288951, intron 1 of 20) -8061 NM_001171508 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 181.75-16 chr11 91434164 91434611 + 0.75 NA Intergenic MSTB1|LTR|ERVL-MaLR -565185 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 191.25-9 chr10 11035371 11035860 + 0.75 NA intron (NM_001326345, intron 1 of 13) intron (NM_001326345, intron 1 of 13) 16859 NM_001326345 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 182.75-27 chr16 61559926 61560338 + 0.75 NA Intergenic LTR33|LTR|ERVL 476306 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 190.25-45 chr6 139986358 139986819 + 0.75 NA intron (NR_121624, intron 1 of 2) MER44D|DNA|TcMar-Tigger 4673 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 218.75-23 chr7 20714110 20714638 + 0.75 NA intron (NM_178559, intron 11 of 18) intron (NM_178559, intron 11 of 18) 67044 NM_001163993 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 199.5-37 chr4 57154459 57154922 + 0.75 NA intron (NR_034081, intron 1 of 4) intron (NR_034081, intron 1 of 4) -44305 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 205-43 chr6 64150708 64151138 + 0.75 NA intron (NM_001292009, intron 31 of 43) L1ME3G|LINE|L1 344087 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 173.25-47 chr3 46320462 46320839 + 0.75 NA Intergenic L1MB3|LINE|L1 -33094 NM_001123041 729230 Hs.511794 NM_001123041 ENSG00000121807 CCR2 CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R C-C motif chemokine receptor 2 protein-coding 172.5-53 chr3 177387163 177387498 + 0.75 NA Intergenic Intergenic -54591 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 186.25-65 chr9 78779505 78779809 + 0.75 NA Intergenic MIR|SINE|MIR 366009 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 163.5-9 chr1 161811791 161812106 + 0.75 NA intron (NM_007348, intron 7 of 15) intron (NM_007348, intron 7 of 15) 45628 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 229.25-21 chr5 92523717 92524148 + 0.75 NA Intergenic L1MC3|LINE|L1 1047411 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 292.5-8 chr5 90460077 90460826 + 0.75 NA 3' UTR (NM_203406, exon 2 of 2) 3' UTR (NM_203406, exon 2 of 2) -13478 NM_001370354 10622 Hs.282387 NM_006467 ENSG00000113356 POLR3G RPC32|RPC7 RNA polymerase III subunit G protein-coding 200-45 chr8 99025828 99026103 + 0.75 NA intron (NR_047582, intron 2 of 8) L1MA5|LINE|L1 12699 NM_015243 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 172.25-67 chr7 36756003 36756267 + 0.75 NA Intergenic Intergenic -31586 NM_001177506 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 189.25-55 chr8 126031729 126032258 + 0.75 NA Intergenic Intergenic -80796 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 150-9 chr10 26121023 26121419 + 0.75 NA intron (NM_017433, intron 18 of 34) intron (NM_017433, intron 18 of 34) -95086 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 215.25-20 chr2 172406262 172406580 + 0.75 NA Intergenic Intergenic -20915 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 161.25-23 chr14 54910304 54910624 + 0.75 NA Intergenic Intergenic -7638 NM_001024071 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 228-11 chr16 9755864 9756420 + 0.75 NA 3' UTR (NM_000833, exon 14 of 14) 3' UTR (NM_000833, exon 14 of 14) -300637 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 359.75-4 chr8 122454955 122455938 + 0.75 NA intron (NR_131202, intron 2 of 3) L2|LINE|L2 113198 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 263.5-14 chr19 27576772 27577409 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -216341 NR_110691 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 147.25-46 chr2 52339276 52339678 + 0.75 NA intron (NR_135237, intron 8 of 10) intron (NR_135237, intron 8 of 10) -31171 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 219.25 chr1 76996249 76996681 + 0.75 NA intron (NM_001320274, intron 2 of 2) intron (NM_001320274, intron 2 of 2) -63678 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 238.75-18 chr2 147098858 147099465 + 0.75 NA Intergenic Intergenic 512104 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 149.25-4 chr1 192553870 192554335 + 0.75 NA Intergenic MIRb|SINE|MIR -21671 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 170.25-35 chr2 184589736 184590049 + 0.75 NA Intergenic Intergenic -8637 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 200.25-48 chr8 24588138 24588674 + 0.75 NA Intergenic MLT1A1|LTR|ERVL-MaLR -39788 NR_125808 101929294 Hs.637673 NR_125808 LOC101929294 - uncharacterized LOC101929294 ncRNA 263.75-12 chr2 186767341 186767797 + 0.75 NA Intergenic Intergenic 73509 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 274.25-6 chr2 201694800 201695313 + 0.75 NA intron (NM_033066, intron 1 of 21) MLT1J|LTR|ERVL-MaLR 3588 NM_033066 58538 Hs.63085 NM_033066 ENSG00000082126 MPP4 ALS2CR5|DLG6 membrane palmitoylated protein 4 protein-coding 160.5-79 chr4 129832142 129832421 + 0.75 NA intron (NR_151713, intron 8 of 16) intron (NR_151713, intron 8 of 16) 60662 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 162.25-56 chr4 62146942 62147288 + 0.75 NA intron (NR_110595, intron 2 of 7) MSTD|LTR|ERVL-MaLR 14650 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 180-46 chr4 34507249 34507662 + 0.75 NA Intergenic Intergenic -237708 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 151.75-56 chr2 238980610 238980932 + 0.75 NA Intergenic L1HS|LINE|L1 -54502 NR_034162 401039 Hs.516791 NM_001001698 ENSG00000227744 LINC01940 - long intergenic non-protein coding RNA 1940 ncRNA 200-18 chr14 47492918 47493281 + 0.75 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -149853 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 214.75-44 chr6 65175822 65176210 + 0.75 NA intron (NM_001292009, intron 12 of 43) L1MA9|LINE|L1 -125402 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 152.25-90 chr7 7611252 7611626 + 0.75 NA Intergenic Intergenic -29313 NM_001302348 729852 Hs.652371 NM_001302348 ENSG00000219545 UMAD1 RPA3-AS1|RPA3OS UBAP1-MVB12-associated (UMA) domain containing 1 protein-coding 201-14 chr14 32761189 32761514 + 0.75 NA intron (NM_004274, intron 11 of 13) intron (NM_004274, intron 11 of 13) -177528 NM_173159 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 197-41 chr6 156648828 156649279 + 0.75 NA Intergenic Intergenic -128802 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 242.75-14 chr2 24632694 24633139 + 0.75 NA intron (NM_001362950, intron 3 of 23) HAL1|LINE|L1 48439 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 235.5-5 chr11 18050894 18051271 + 0.75 NA Intergenic L1MB5|LINE|L1 -10294 NM_004179 7166 Hs.591999 NM_004179 ENSG00000129167 TPH1 TPRH|TRPH tryptophan hydroxylase 1 protein-coding 163.5-71 chr3 40418561 40418818 + 0.75 NA intron (NM_001248, intron 7 of 10) intron (NM_001248, intron 7 of 10) 31505 NM_001291960 956 Hs.441145 NM_001248 ENSG00000168032 ENTPD3 CD39L3|HB6|NTPDase-3 ectonucleoside triphosphate diphosphohydrolase 3 protein-coding 328.5-4 chr3 53894253 53894711 + 0.75 NA Intergenic MER33|DNA|hAT-Charlie -2623 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 235.5-4 chr10 104129947 104130470 + 0.75 NA exon (NM_025145, exon 38 of 38) exon (NM_025145, exon 38 of 38) 8037 NM_001002759 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 213.25-29 chr3 147916491 147916822 + 0.75 NA Intergenic L1ME4a|LINE|L1 -161503 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 171.25-5 chr1 225357327 225357588 + 0.75 NA intron (NM_001367479, intron 73 of 85) intron (NM_001367479, intron 73 of 85) 70581 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 292.25-3 chr18 8233698 8234457 + 0.75 NA intron (NM_002845, intron 14 of 30) L1MC1|LINE|L1 132957 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 172.75-20 chr14 25293856 25294134 + 0.75 NA Intergenic Intergenic -243698 NM_001351941 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 149.5-50 chr2 174023759 174024006 + 0.75 NA Intergenic Intergenic -1398 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 152.75-8 chr1 153544842 153545124 + 0.75 NA promoter-TSS (NR_125947) promoter-TSS (NR_125947) -759 NR_125947 101928034 Hs.711397 NR_125947 LOC101928034 - uncharacterized LOC101928034 ncRNA 150.5-104 chr6 66665867 66666084 + 0.75 NA Intergenic Intergenic 878096 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 171-35 chr2 167360994 167361345 + 0.75 NA Intergenic L1MA4|LINE|L1 173797 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 153.5-42 chr18 12804905 12805294 + 0.75 NA intron (NM_080423, intron 7 of 8) L1MA6|LINE|L1 35863 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 197-20 chr2 73522354 73522805 + 0.75 NA intron (NM_015120, intron 11 of 22) AluSc|SINE|Alu 65476 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 173.75-24 chr14 65383732 65384133 + 0.75 NA Intergenic LTR33|LTR|ERVL -26660 NR_038167 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 149.5-16 chr11 104916573 104916852 + 0.75 NA intron (NR_034079, intron 1 of 4) intron (NR_034079, intron 1 of 4) 1463 NR_034079 643733 Hs.713751 NR_034078 ENSG00000235505 CASP17P - caspase 17, pseudogene pseudo 216.75-18 chr2 126190911 126191376 + 0.75 NA Intergenic L1PA16|LINE|L1 -73158 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 191-45 chr6 28374616 28374939 + 0.75 NA Intergenic L1MDa|LINE|L1 7828 NR_160527 9753 Hs.134816 NM_014724 ENSG00000158691 ZSCAN12 ZFP96|ZNF29K1|ZNF305|ZNF96|dJ29K1.2 zinc finger and SCAN domain containing 12 protein-coding 160.75-12 chr10 103980298 103980614 + 0.75 NA intron (NM_001304743, intron 1 of 17) L1MB3|LINE|L1 13316 NM_001304743 9748 Hs.591922 NM_014720 ENSG00000065613 SLK LOSK|STK2|bA16H23.1|se20-9 STE20 like kinase protein-coding 310.5-5 chr4 78337877 78338415 + 0.75 NA intron (NM_001166133, intron 20 of 41) intron (NM_001166133, intron 20 of 41) 49161 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 334.75-5 chr17 75352761 75353365 + 0.75 NA intron (NM_002086, intron 2 of 5) AluY|SINE|Alu 52615 NM_002086 2885 Hs.444356 NM_002086 ENSG00000177885 GRB2 ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2 growth factor receptor bound protein 2 protein-coding 215.25-4 chr1 225088558 225088931 + 0.75 NA intron (NM_001367479, intron 21 of 85) L1ME1|LINE|L1 159069 NM_001349912 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 205.75-41 chr3 177524419 177524927 + 0.75 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 82752 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 198-20 chr22 28141510 28141983 + 0.75 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -221134 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 155.25-40 chr2 32194031 32194489 + 0.75 NA intron (NM_001330478, intron 5 of 9) intron (NM_001330478, intron 5 of 9) 28396 NM_001330476 55676 Hs.23248 NM_017964 ENSG00000152683 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 member 6 protein-coding 179.25-16 chr11 20889351 20889798 + 0.75 NA intron (NM_201551, intron 5 of 18) intron (NM_201551, intron 5 of 18) 219988 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 228-10 chr14 27708174 27708687 + 0.75 NA Intergenic L1M3|LINE|L1 -35209 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 188-7 chr1 100874579 100875004 + 0.75 NA intron (NM_001261442, intron 3 of 3) intron (NM_001261442, intron 3 of 3) 20051 NM_001033025 2135 Hs.357637 NM_001439 ENSG00000162694 EXTL2 EXTR2 exostosin like glycosyltransferase 2 protein-coding 219.75-43 chr8 116260843 116261231 + 0.75 NA intron (NR_046215, intron 2 of 13) intron (NR_046215, intron 2 of 13) 64022 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 156-22 chr14 41474363 41474727 + 0.75 NA Intergenic MLT1E3|LTR|ERVL-MaLR -132311 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 186.5-8 chr1 239699233 239699563 + 0.75 NA intron (NM_000740, intron 3 of 4) MLT1A|LTR|ERVL-MaLR 19721 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 187.5-22 chr16 78115988 78116310 + 0.75 NA intron (NM_001291997, intron 3 of 7) L1MA1|LINE|L1 16495 NM_016373 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 152.25-2 chr1 39806840 39807103 + 0.75 NA Intergenic L1MC4|LINE|L1 17995 NR_135805 101929536 Hs.552820 NR_135805 ENSG00000261798 LOC101929536 - uncharacterized LOC101929536 ncRNA 206.25-8 chr11 21286958 21287269 + 0.75 NA intron (NM_201551, intron 14 of 18) intron (NM_201551, intron 14 of 18) 617527 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 161.75-25 chr18 73398899 73399178 + 0.75 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 74097 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 192.75-38 chr3 45869127 45869534 + 0.75 NA intron (NM_001276379, intron 2 of 9) intron (NM_001276379, intron 2 of 9) -17174 NM_001256369 10803 Hs.225946 NM_006641 ENSG00000173585 CCR9 CC-CKR-9|CDw199|GPR-9-6|GPR28 C-C motif chemokine receptor 9 protein-coding 228.75-19 chr3 163691255 163691564 + 0.75 NA Intergenic Intergenic -388108 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 197.5-31 chr2 82185809 82186381 + 0.75 NA Intergenic L1MC4|LINE|L1 -670708 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 221-14 chr18 11883380 11884018 + 0.75 NA non-coding (NR_040242, exon 13 of 13) non-coding (NR_040242, exon 13 of 13) 24618 NM_001330563 65258 Hs.712666 NM_023075 ENSG00000154889 MPPE1 PGAP5 metallophosphoesterase 1 protein-coding 163-47 chr2 142144425 142144824 + 0.75 NA Intergenic CR1_Mam|LINE|CR1 -12923 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 187.25-28 chr17 60356582 60356850 + 0.75 NA intron (NM_032582, intron 1 of 33) L1M4|LINE|L1 35417 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 247-23 chr7 53596740 53597164 + 0.75 NA Intergenic Intergenic 214979 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 163.5-80 chr3 181466598 181467093 + 0.75 NA intron (NR_075091, intron 3 of 7) L1ME4b|LINE|L1 -24359 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 149.5-84 chr7 20372481 20372913 + 0.75 NA intron (NM_002214, intron 3 of 13) intron (NM_002214, intron 3 of 13) -40935 NR_110120 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 161-47 chr2 76433390 76433678 + 0.75 NA Intergenic Intergenic -552431 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 291-7 chr7 84550899 84551375 + 0.75 NA intron (NR_110079, intron 2 of 2) intron (NR_110079, intron 2 of 2) 18661 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 184.5-35 chr16 74604747 74605156 + 0.75 NA intron (NR_027264, intron 1 of 26) AluSc|SINE|Alu 2163 NM_012201 2734 Hs.109731 NM_012201 ENSG00000090863 GLG1 CFR-1|ESL-1|MG-160|MG160 golgi glycoprotein 1 protein-coding 155.5-110 chr8 136396976 136397441 + 0.75 NA Intergenic Intergenic -133590 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 202.25-19 chr14 48866128 48866458 + 0.75 NA Intergenic Intergenic 720087 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 204-37 chr5 126036062 126036537 + 0.75 NA Intergenic L2|LINE|L2 -143278 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 189-43 chr4 43075268 43075595 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR 182165 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 256.25-17 chr5 127913656 127914257 + 0.75 NA intron (NM_001317938, intron 6 of 6) intron (NM_001317938, intron 6 of 6) 169219 NR_152799 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 219-7 chr14 52739106 52739438 + 0.75 NA intron (NM_001130701, intron 2 of 11) intron (NM_001130701, intron 2 of 11) 9106 NM_001130701 6815 Hs.364980 NM_145251 ENSG00000198252 STYX - serine/threonine/tyrosine interacting protein protein-coding 212.75-27 chr5 9103534 9104183 + 0.75 NA intron (NM_003966, intron 16 of 22) intron (NM_003966, intron 16 of 22) -49963 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 237-4 chr2 51713850 51714535 + 0.75 NA intron (NR_135237, intron 5 of 10) L1MA5A|LINE|L1 -656456 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 282.5-12 chr4 30558850 30559460 + 0.75 NA Intergenic Intergenic -161214 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 253-14 chrX 40345950 40346391 + 0.75 NA Intergenic L1M4|LINE|L1 83253 NR_110386 101927476 Hs.522607 NR_110386 ENSG00000236393 LOC101927476 - uncharacterized LOC101927476 ncRNA 292 chr18 13274819 13275446 + 0.75 NA intron (NM_181482, intron 1 of 5) intron (NM_181482, intron 1 of 5) -2973 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 230.75-46 chr8 137604439 137604936 + 0.75 NA Intergenic Intergenic -191099 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 215.5-26 chr2 33143593 33143952 + 0.75 NA intron (NM_206943, intron 5 of 33) intron (NM_206943, intron 5 of 33) 9175 NM_001166266 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 160.5-37 chr15 78510641 78511172 + 0.75 NA intron (NM_001083612, intron 1 of 4) L1ME2|LINE|L1 3329 NM_001013619 123688 Hs.307962 NM_001013619 ENSG00000188266 HYKK AGPHD1 hydroxylysine kinase protein-coding 159.75-2 chr1 97102428 97102814 + 0.75 NA intron (NM_000110, intron 20 of 22) intron (NM_000110, intron 20 of 22) 6698 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 256.75-5 chr11 96453995 96454434 + 0.75 NA intron (NR_047481, intron 1 of 4) THE1B|LTR|ERVL-MaLR 52663 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 165.5-65 chr4 36035541 36036022 + 0.75 NA intron (NR_146893, intron 35 of 36) L1ME3A|LINE|L1 208158 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 218-15 chr3 39475535 39475872 + 0.75 NA intron (NR_103506, intron 1 of 2) L1MC4a|LINE|L1 8023 NR_103505 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 320-2 chr11 24973610 24974590 + 0.75 NA intron (NM_001009909, intron 7 of 11) L1P3|LINE|L1 477047 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 151.25-28 chr15 65584992 65585338 + 0.75 NA intron (NR_045106, intron 9 of 11) (AT)n|Simple_repeat|Simple_repeat 25966 NR_045104 81556 Hs.6686 NM_030800 ENSG00000138614 INTS14 C15orf44|VWA9 integrator complex subunit 14 protein-coding 165.5-41 chr18 32190184 32190533 + 0.75 NA intron (NM_005925, intron 1 of 14) intron (NM_005925, intron 1 of 14) 319 NM_001308171 4225 Hs.194777 NM_005925 ENSG00000141434 MEP1B - meprin A subunit beta protein-coding 253.5-7 chr13 92510712 92511133 + 0.75 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 20759 NR_049840 100847092 NR_049840 ENSG00000263741 MIR548AS - microRNA 548as ncRNA 209.5-11 chr14 44476817 44477298 + 0.75 NA Intergenic Intergenic 30226 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 198.5-55 chr8 87633939 87634400 + 0.75 NA Intergenic Intergenic 239846 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 147.25-49 chr2 117519894 117520143 + 0.75 NA Intergenic LTR16A2|LTR|ERVL -294673 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 173.75-56 chr6 39006066 39006523 + 0.75 NA intron (NM_001371, intron 87 of 91) L1MB7|LINE|L1 -42487 NR_136563 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 166.5-2 chr1 212303080 212303394 + 0.75 NA intron (NM_001199756, intron 1 of 12) L1MB8|LINE|L1 1379 NM_001199756 5525 Hs.744012 NM_006243 ENSG00000066027 PPP2R5A B56A|B56alpha|PR61A protein phosphatase 2 regulatory subunit B'alpha protein-coding 315-4 chr6 70589799 70590300 + 0.75 NA TTS (NM_145267) TTS (NM_145267) 23119 NM_145267 135154 Hs.418495 NM_145267 ENSG00000154079 SDHAF4 C6orf57|Sdh8 succinate dehydrogenase complex assembly factor 4 protein-coding 171.5-39 chr19 46669917 46670173 + 0.75 NA intron (NR_040042, intron 2 of 2) intron (NR_040042, intron 2 of 2) 8567 NR_040041 100506068 Hs.434327 NR_040041 ENSG00000245598 DACT3-AS1 - DACT3 antisense RNA 1 ncRNA 196.75-52 chr6 153063520 153063881 + 0.75 NA intron (NM_012419, intron 1 of 4) L1MA2|LINE|L1 -60885 NM_001301872 54516 Hs.225836 NM_019041 ENSG00000112031 MTRF1L HMRF1L|MRF1L|mtRF1a mitochondrial translational release factor 1 like protein-coding 168.25-19 chr14 49525163 49525542 + 0.75 NA Intergenic Intergenic 61028 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 184.5-16 chr10 125476308 125476681 + 0.75 NA Intergenic Intergenic -97877 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 263.75-7 chr16 35490529 35490934 + 0.75 NA Intergenic Intergenic -10135 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 155.75-64 chr21 28199169 28199503 + 0.75 NA intron (NR_126012, intron 3 of 5) L1PB4|LINE|L1 29331 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 200-37 chr4 133246329 133246595 + 0.75 NA Intergenic MER33|DNA|hAT-Charlie 97168 NM_020815 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 177.75-18 chr14 80871730 80872128 + 0.75 NA intron (NM_152446, intron 8 of 24) intron (NM_152446, intron 8 of 24) 69809 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 186.75-13 chr11 4779461 4779765 + 0.75 NA Intergenic L1ME3A|LINE|L1 -9675 NM_001004752 256892 NM_001004752 ENSG00000280021 OR51F1 OR11-21|OR51F1P olfactory receptor family 51 subfamily F member 1 (gene/pseudogene) protein-coding 170-62 chr8 33438395 33438645 + 0.75 NA intron (NM_032664, intron 3 of 4) AluJo|SINE|Alu 34626 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 186.25-13 chr14 40766147 40766541 + 0.75 NA Intergenic Intergenic -188367 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 302.5-9 chr4 45529031 45529688 + 0.75 NA Intergenic LOR1b|LTR|ERV1 594695 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 168-55 chr4 73915451 73916018 + 0.75 NA Intergenic Intergenic 46341 NR_046035 2919 Hs.789 NM_001511 ENSG00000163739 CXCL1 FSP|GRO1|GROa|MGSA|MGSA-a|NAP-3|SCYB1 C-X-C motif chemokine ligand 1 protein-coding 277.5-6 chr14 68066474 68067029 + 0.75 NA intron (NM_133509, intron 7 of 10) FLAM_A|SINE|Alu 243159 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 219.75-34 chr6 130710223 130710619 + 0.75 NA Intergenic MLT1L|LTR|ERVL-MaLR -116984 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 257.5-18 chr5 4913090 4913749 + 0.75 NA Intergenic Intergenic -120940 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 271.75-10 chr18 73698579 73699081 + 0.75 NA Intergenic L1MD2|LINE|L1 373889 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 240.5-24 chr5 79571785 79572242 + 0.75 NA Intergenic LTR49-int|LTR|ERV1 -40404 NM_001114394 167153 Hs.418198 NM_173797 ENSG00000164329 TENT2 APD4|GLD2|PAPD4|TUT2 terminal nucleotidyltransferase 2 protein-coding 187-39 chr4 117406801 117407243 + 0.75 NA Intergenic Intergenic -21376 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 172.75-10 chr11 37799455 37799903 + 0.75 NA Intergenic Intergenic -138922 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 210.25-24 chr2 202674284 202674612 + 0.75 NA intron (NM_173511, intron 1 of 7) intron (NM_173511, intron 1 of 7) 39479 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 193-39 chr4 105843926 105844294 + 0.75 NA intron (NM_001370181, intron 11 of 11) intron (NM_001370181, intron 11 of 11) -16938 NR_125927 101929529 Hs.603751 NR_125927 ENSG00000251175 LOC101929529 - uncharacterized LOC101929529 ncRNA 243.5-9 chr14 73626873 73627317 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger 10251 NM_001037162 641372 Hs.122038 NM_001037162 ENSG00000205669 ACOT6 C14orf42|c14_5530 acyl-CoA thioesterase 6 protein-coding 322 chr1 63444396 63445162 + 0.75 NA intron (NM_001347145, intron 7 of 7) intron (NM_001347145, intron 7 of 7) 77152 NM_013339 29929 Hs.258501 NM_013339 ENSG00000088035 ALG6 CDG1C ALG6 alpha-1,3-glucosyltransferase protein-coding 263.25-4 chr11 45573871 45574498 + 0.75 NA Intergenic MIRb|SINE|MIR 91438 NM_003654 8534 Hs.104576 NM_003654 ENSG00000175264 CHST1 C6ST|GST-1|KS6ST|KSGal6ST|KSST carbohydrate sulfotransferase 1 protein-coding 182.5-23 chr17 62998018 62998422 + 0.75 NA intron (NM_025185, intron 1 of 25) L1PA14|LINE|L1 31985 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 219.5-28 chr8 57623255 57623797 + 0.75 NA Intergenic LTR16A|LTR|ERVL -122623 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 152.25-56 chr20 54367950 54368342 + 0.75 NA Intergenic Intergenic -107447 NM_018431 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 242.5-25 chr4 33956199 33956729 + 0.75 NA intron (NR_125902, intron 3 of 4) L1P4d|LINE|L1 83429 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 209.5-35 chr3 136743451 136743805 + 0.75 NA intron (NM_005862, intron 1 of 33) L1MD|LINE|L1 8750 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 146-76 chr6 33831632 33831846 + 0.75 NA Intergenic (GCAGA)n|Simple_repeat|Simple_repeat -27736 NM_002418 4295 Hs.2813 NM_002418 ENSG00000096395 MLN - motilin protein-coding 294-4 chr5 121253552 121254078 + 0.75 NA Intergenic Intergenic -68735 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 146.25-79 chr5 128393820 128394200 + 0.75 NA intron (NM_001999, intron 9 of 64) intron (NM_001999, intron 9 of 64) 144235 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 203.75-38 chr5 138529553 138530013 + 0.75 NA intron (NM_001291975, intron 2 of 11) AluJo|SINE|Alu 11928 NM_001291974 2107 Hs.483494 NM_004730 ENSG00000120705 ETF1 D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1 eukaryotic translation termination factor 1 protein-coding 151-73 chr5 27759235 27759568 + 0.75 NA Intergenic Intergenic 287109 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 197.25-50 chr8 135542721 135543081 + 0.75 NA intron (NM_006558, intron 3 of 8) intron (NM_006558, intron 3 of 8) 85445 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 159.25-78 chr8 120287234 120287571 + 0.75 NA intron (NM_021110, intron 33 of 47) intron (NM_021110, intron 33 of 47) 157748 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 174.25-16 chr12 25036642 25037182 + 0.75 NA intron (NM_001321724, intron 16 of 17) intron (NM_001321724, intron 16 of 17) -15316 NR_159367 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 175.75-66 chr8 120905997 120906374 + 0.75 NA Intergenic Intergenic -94139 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 184.25-43 chr3 38303662 38304095 + 0.75 NA intron (NM_001320033, intron 1 of 10) U6|snRNA|snRNA -2058 NM_004803 9389 Hs.165559 NM_004803 ENSG00000144671 SLC22A14 OCTL2|OCTL4|ORCTL4 solute carrier family 22 member 14 protein-coding 246.75-2 chr11 106256386 106257103 + 0.75 NA intron (NR_120551, intron 3 of 4) MIRb|SINE|MIR 5337 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 221.75-3 chr1 187249202 187249630 + 0.75 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) 156574 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 185.25-58 chr3 192376023 192376309 + 0.75 NA intron (NM_004113, intron 2 of 5) L1MEd|LINE|L1 32883 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 156-41 chr2 145800764 145801096 + 0.75 NA Intergenic Intergenic -786127 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 180-34 chr2 146211736 146212084 + 0.75 NA Intergenic MIR|SINE|MIR -375147 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 192.25-26 chr16 78831020 78831441 + 0.75 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 731576 NM_016373 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 267.5-15 chr4 62209489 62209917 + 0.75 NA Intergenic Intergenic -47938 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 217.75-7 chr10 31392801 31393434 + 0.75 NA intron (NM_001323646, intron 4 of 11) AluJb|SINE|Alu 6638 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 293-3 chr11 99519150 99519945 + 0.75 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -36598 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 188.5-72 chr8 127266570 127266959 + 0.75 NA intron (NR_117099, intron 1 of 3) intron (NR_117099, intron 1 of 3) 22127 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 240-18 chr3 94475350 94475944 + 0.75 NA Intergenic MLT1H2|LTR|ERVL-MaLR 412586 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 220-15 chr3 104302063 104302727 + 0.75 NA Intergenic L1MA4A|LINE|L1 -778279 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 218.5-12 chr14 66964397 66964913 + 0.75 NA intron (NM_020806, intron 8 of 22) LTR33|LTR|ERVL -224785 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 155.25-23 chr13 65885839 65886094 + 0.75 NA Intergenic Intergenic 19919 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 197.5-23 chr17 16038145 16038639 + 0.75 NA intron (NM_001190440, intron 43 of 44) intron (NM_001190440, intron 43 of 44) 38568 NM_017775 54902 Hs.462316 NM_017775 ENSG00000011295 TTC19 2010204O13Rik|MC3DN2 tetratricopeptide repeat domain 19 protein-coding 207.25-14 chr12 59188581 59189052 + 0.75 NA Intergenic Intergenic -268278 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 154-57 chr2 161311183 161311516 + 0.75 NA intron (NM_005805, intron 1 of 11) MER2|DNA|TcMar-Tigger 2924 NM_005805 10213 Hs.740477 NM_005805 ENSG00000115233 PSMD14 PAD1|POH1|RPN11 proteasome 26S subunit, non-ATPase 14 protein-coding 159.25-85 chr9 104767382 104767654 + 0.75 NA intron (NR_130760, intron 2 of 5) intron (NR_130760, intron 2 of 5) 3389 NM_018376 55335 Hs.429294 NM_018376 ENSG00000165028 NIPSNAP3B FP944|NIPSNAP3|SNAP1 nipsnap homolog 3B protein-coding 170.75-54 chr5 90633003 90633392 + 0.75 NA intron (NR_003149, intron 9 of 89) intron (NR_003149, intron 9 of 89) 74400 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 160.5-80 chr4 150545771 150546088 + 0.75 NA intron (NM_001367550, intron 40 of 56) intron (NM_001367550, intron 40 of 56) -33160 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 148-23 chr12 40761474 40761818 + 0.75 NA intron (NM_001256063, intron 1 of 15) (TATTTA)n|Simple_repeat|Simple_repeat -66292 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 197.25-47 chr8 66704309 66704726 + 0.75 NA intron (NM_001204173, intron 3 of 18) intron (NM_001204173, intron 3 of 18) -8264 NM_001033578 23678 Hs.613417 NM_013257 ENSG00000104205 SGK3 CISK|SGK2|SGKL serum/glucocorticoid regulated kinase family member 3 protein-coding 190.75-52 chr5 19123111 19123397 + 0.75 NA Intergenic Intergenic 763018 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 266-12 chr8 139843443 139844112 + 0.75 NA intron (NM_001160372, intron 21 of 22) MLT1D|LTR|ERVL-MaLR -140654 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 184.25-3 chr1 101899794 101900047 + 0.75 NA intron (NM_058170, intron 1 of 5) intron (NM_058170, intron 1 of 5) 27908 NR_033424 94236 Hs.606193 NR_033424 DNAJA1P5 HEJ1 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 pseudo 202.75-44 chr7 95134881 95135287 + 0.75 NA intron (NM_017650, intron 4 of 15) intron (NM_017650, intron 4 of 15) 189448 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 175.75-24 chr17 29301459 29301735 + 0.75 NA Intergenic Intergenic -7449 NM_020772 57532 Hs.462598 NM_020772 ENSG00000108256 NUFIP2 182-FIP|82-FIP|FIP-82|PIG1 nuclear FMR1 interacting protein 2 protein-coding 190.75-48 chr3 162371440 162371853 + 0.75 NA Intergenic Intergenic 874838 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 175.5-67 chr3 184970893 184971192 + 0.75 NA intron (NM_001009921, intron 38 of 46) L2c|LINE|L2 158535 NR_146115 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 167-60 chr4 69708148 69708513 + 0.75 NA Intergenic Intergenic 52290 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 160.75-6 chr1 91813799 91814266 + 0.75 NA intron (NR_036634, intron 2 of 17) MER1B|DNA|hAT-Charlie 72119 NR_036634 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 296.75-3 chr18 37423624 37424120 + 0.75 NA intron (NM_001353724, intron 2 of 12) intron (NM_001353724, intron 2 of 12) 42632 NR_132967 106635546 NR_132967 SNORA111 - small nucleolar RNA, H/ACA box 111 snoRNA 153-73 chr5 89084717 89085238 + 0.75 NA intron (NR_136221, intron 3 of 6) intron (NR_136221, intron 3 of 6) -180872 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 196-39 chr5 40987866 40988385 + 0.75 NA Intergenic ERVL-B4-int|LTR|ERVL 78628 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 273.25-12 chr2 186288688 186289389 + 0.75 NA Intergenic Intergenic -197222 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 222.75-18 chr2 101601188 101601703 + 0.75 NA Intergenic Intergenic -96258 NM_145686 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 168.75-62 chr22 43560119 43560617 + 0.75 NA intron (NM_198856, intron 24 of 29) L1M5|LINE|L1 44114 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 165.5-50 chr2 127779733 127780153 + 0.75 NA intron (NM_001006622, intron 1 of 5) intron (NM_001006622, intron 1 of 5) 31228 NM_001006623 55339 Hs.554831 NM_018383 ENSG00000136709 WDR33 NET14|WDC146 WD repeat domain 33 protein-coding 156.5-13 chr1 181941702 181941945 + 0.75 NA Intergenic L1MEg|LINE|L1 119889 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 149-63 chr3 12378697 12379036 + 0.75 NA intron (NM_015869, intron 1 of 6) L1MA9|LINE|L1 27364 NM_015869 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 190.75-22 chr14 50418929 50419360 + 0.75 NA 3' UTR (NM_006575, exon 32 of 32) 3' UTR (NM_006575, exon 32 of 32) -21846 NM_001367064 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 166.75-5 chr1 222620489 222621018 + 0.75 NA intron (NM_198551, intron 1 of 27) MIR3|SINE|MIR 2651 NM_001324062 375056 Hs.118474 NM_198551 ENSG00000154305 MIA3 ARNT|D320|TANGO|TANGO1|UNQ6077 MIA SH3 domain ER export factor 3 protein-coding 473.5 chr8 116164781 116165747 + 0.75 NA intron (NR_046215, intron 4 of 13) intron (NR_046215, intron 4 of 13) 159795 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 156-97 chr8 120765683 120766099 + 0.75 NA intron (NR_125419, intron 2 of 4) MLT1J|LTR|ERVL-MaLR 4638 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 167-25 chr14 68205745 68206079 + 0.75 NA intron (NM_133509, intron 7 of 10) L1MC4|LINE|L1 382320 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 165-3 chr1 176513238 176513631 + 0.75 NA intron (NM_021936, intron 1 of 4) intron (NM_021936, intron 1 of 4) 50259 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 239-5 chr13 39183319 39183900 + 0.75 NA Intergenic L1MC4|LINE|L1 145153 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 313.5-2 chr11 26035806 26036475 + 0.75 NA Intergenic Intergenic -152983 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 218.75-11 chr2 37580912 37581436 + 0.75 NA Intergenic Intergenic 91025 NM_006449 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 183.75-80 chr6 49343119 49343533 + 0.75 NA Intergenic Intergenic 119927 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 185.75-68 chr6 54872148 54872528 + 0.75 NA intron (NM_001010872, intron 2 of 4) intron (NM_001010872, intron 2 of 4) 25567 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 198.25-55 chr7 146483598 146484000 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger -290472 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 194.5-32 chr2 16473628 16473997 + 0.75 NA Intergenic Intergenic 192022 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 194.5-13 chr11 47484311 47484818 + 0.75 NA intron (NM_198700, intron 4 of 13) intron (NM_198700, intron 4 of 13) 4460 NM_001172640 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP Elav-like family member 1 protein-coding 166.5-17 chr13 107931784 107932103 + 0.75 NA Intergenic Intergenic -64447 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155 member A protein-coding 202-25 chr2 158393740 158394251 + 0.75 NA intron (NM_138803, intron 1 of 13) intron (NM_138803, intron 1 of 13) 62758 NM_001301684 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 254.5-12 chr16 19652415 19652896 + 0.75 NA intron (NM_001300743, intron 23 of 27) intron (NM_001300743, intron 23 of 27) -63801 NM_001305121 124152 Hs.460217 NM_153208 ENSG00000174628 IQCK - IQ motif containing K protein-coding 152-78 chr5 152292605 152292880 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger 112537 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 168.75-56 chr2 185245892 185246129 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL -78938 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 274.25-15 chr8 86890498 86891097 + 0.75 NA intron (NM_173538, intron 2 of 10) L1MA7|LINE|L1 24382 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 182.5-58 chr5 117837320 117837689 + 0.75 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 107143 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 218.5-17 chr18 71285305 71285767 + 0.75 NA Intergenic Intergenic 293420 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 196-21 chr18 1998649 1999091 + 0.75 NA Intergenic HAL1|LINE|L1 572635 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 257-5 chr15 76767808 76768361 + 0.75 NA intron (NM_020843, intron 10 of 31) L1MEc|LINE|L1 93860 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 348.25-3 chr2 104305421 104306284 + 0.75 NA Intergenic Intergenic 102480 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 180-18 chr13 76156293 76156700 + 0.75 NA Intergenic Intergenic -221364 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 242-19 chr5 42027761 42028370 + 0.75 NA Intergenic L1MA2|LINE|L1 102784 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 288.5-5 chr2 142364635 142365096 + 0.75 NA Intergenic LTR33|LTR|ERVL -233164 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 156-70 chr4 169695412 169695662 + 0.75 NA intron (NM_001243372, intron 7 of 11) intron (NM_001243372, intron 7 of 11) 35475 NM_001243374 1182 Hs.481186 NM_001829 ENSG00000109572 CLCN3 CLC3|ClC-3 chloride voltage-gated channel 3 protein-coding 155-65 chr3 189478789 189479136 + 0.75 NA Intergenic Intergenic -117784 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 197.5-7 chr10 82795727 82796150 + 0.75 NA intron (NR_163252, intron 3 of 8) LTR54B|LTR|ERV1 -563018 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 203-18 chr18 59655903 59656342 + 0.75 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 41301 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 194.75-25 chr21 16646752 16647019 + 0.75 NA Intergenic L1ME2|LINE|L1 56648 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 158.25-68 chr3 151018863 151019158 + 0.75 NA intron (NR_024066, intron 1 of 5) L1ME3G|LINE|L1 -46011 NM_001195794 7401 Hs.745448 NM_052995 ENSG00000163646 CLRN1 RP61|USH3|USH3A clarin 1 protein-coding 157.5-21 chr12 85842095 85842455 + 0.75 NA Intergenic Intergenic -5866 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 219.5-21 chr4 117860765 117861176 + 0.75 NA intron (NR_147154, intron 1 of 1) L1ME3A|LINE|L1 26569 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 224.75-20 chr2 28833398 28833950 + 0.75 NA intron (NM_001008779, intron 4 of 4) L1MB7|LINE|L1 17677 NM_001008779 245711 Hs.511956 NM_182756 ENSG00000163806 SPDYA RINGO3|RINGOA|SPDY1|SPY1 speedy/RINGO cell cycle regulator family member A protein-coding 259.5-12 chr5 15503555 15504185 + 0.75 NA intron (NM_001278317, intron 1 of 3) intron (NM_001278317, intron 1 of 3) 2432 NM_001278317 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 227.5-12 chr2 72372914 72373255 + 0.75 NA intron (NR_135774, intron 17 of 19) AluSx1|SINE|Alu -225222 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 188.25-27 chr2 30219012 30219550 + 0.75 NA Intergenic Intergenic -12253 NM_030915 81606 Hs.567598 NM_030915 ENSG00000213626 LBH - LBH regulator of WNT signaling pathway protein-coding 211.75-40 chr7 52645829 52646285 + 0.75 NA Intergenic L2a|LINE|L2 -389576 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 168.25-33 chr2 41678856 41679327 + 0.75 NA Intergenic Intergenic -198464 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 204-11 chr14 63028357 63028896 + 0.75 NA intron (NM_139318, intron 1 of 10) intron (NM_139318, intron 1 of 10) 16832 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 224.5-6 chr11 38951202 38951705 + 0.75 NA Intergenic Intergenic 302595 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 369.25 chr1 161934552 161935320 + 0.75 NA intron (NM_007348, intron 15 of 15) intron (NM_007348, intron 15 of 15) 89529 NM_001297713 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 196.5-3 chr1 199282706 199283225 + 0.75 NA intron (NR_147896, intron 3 of 3) intron (NR_147896, intron 3 of 3) 134367 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 163.75-2 chr1 19670158 19670439 + 0.75 NA intron (NM_000871, intron 1 of 2) L2a|LINE|L2 5423 NM_000871 3362 Hs.22180 NM_000871 ENSG00000158748 HTR6 5-HT6|5-HT6R 5-hydroxytryptamine receptor 6 protein-coding 213.75-24 chr4 115786348 115786886 + 0.75 NA Intergenic L1MB3|LINE|L1 -513108 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 162-31 chr17 68667154 68667542 + 0.75 NA intron (NR_110825, intron 2 of 4) intron (NR_110825, intron 2 of 4) 39194 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 176.75-89 chr8 89909165 89909453 + 0.75 NA intron (NM_001126111, intron 1 of 5) intron (NM_001126111, intron 1 of 5) 6739 NM_001126111 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 252.25-16 chr7 20082665 20083218 + 0.75 NA intron (NR_110114, intron 1 of 5) intron (NR_110114, intron 1 of 5) 57485 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 153-74 chr5 93088191 93088583 + 0.75 NA Intergenic Intergenic 482956 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 156.5-111 chr8 106894147 106894540 + 0.75 NA Intergenic (TATATAT)n|Simple_repeat|Simple_repeat -124099 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 233-19 chr2 161695271 161695595 + 0.75 NA intron (NM_001354451, intron 1 of 25) intron (NM_001354451, intron 1 of 25) 71017 NM_001354449 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 204.5-12 chr11 116111157 116111546 + 0.75 NA Intergenic MER77|LTR|ERVL -351151 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 183.75-60 chr3 80132487 80133013 + 0.75 NA Intergenic Intergenic -364752 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 176-39 chr20 47612580 47613075 + 0.75 NA intron (NM_181659, intron 2 of 22) intron (NM_181659, intron 2 of 22) 110940 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 176-29 chr2 24640656 24641063 + 0.75 NA intron (NM_001362950, intron 3 of 23) L1M4a1|LINE|L1 56382 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 181.25-31 chr2 218822102 218822424 + 0.75 NA promoter-TSS (NR_128707) promoter-TSS (NR_128707) -827 NR_128707 103504730 NR_128707 ENSG00000283639 MIR9500 hsa-mir-9500 microRNA 9500 ncRNA 158.75-24 chr14 67362734 67363107 + 0.75 NA intron (NM_004094, intron 1 of 7) intron (NM_004094, intron 1 of 7) 2592 NM_004094 1965 Hs.151777 NM_004094 ENSG00000134001 EIF2S1 EIF-2|EIF-2A|EIF-2alpha|EIF2|EIF2A eukaryotic translation initiation factor 2 subunit alpha protein-coding 235.75-30 chr7 123935800 123936277 + 0.75 NA intron (NM_001174046, intron 1 of 4) intron (NM_001174046, intron 1 of 4) 10183 NM_001174045 6677 Hs.121494 NM_003117 ENSG00000106304 SPAM1 HEL-S-96n|HYA1|HYAL1|HYAL3|HYAL5|PH-20|PH20|SPAG15 sperm adhesion molecule 1 protein-coding 268.25-4 chr11 103379866 103380362 + 0.75 NA intron (NM_001377, intron 83 of 88) intron (NM_001377, intron 83 of 88) 270688 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 289.25-2 chr11 12479294 12479756 + 0.75 NA intron (NM_018222, intron 4 of 12) AluJb|SINE|Alu 101954 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 209.5-24 chr2 24266198 24266746 + 0.75 NA intron (NM_001348182, intron 19 of 38) intron (NM_001348182, intron 19 of 38) 91419 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 160-82 chr8 78960483 78960922 + 0.75 NA Intergenic Intergenic 123173 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 293-7 chr4 37183655 37184275 + 0.75 NA Intergenic L1ME4a|LINE|L1 58026 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 224.75-47 chr9 102482828 102483220 + 0.75 NA Intergenic Intergenic -36613 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 211.5-51 chr9 138032007 138032465 + 0.75 NA intron (NM_001243812, intron 20 of 45) L1MC2|LINE|L1 12835 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 152-53 chr3 97539387 97539621 + 0.75 NA intron (NM_001080448, intron 11 of 17) L2a|LINE|L2 99897 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 228.25-22 chr3 139261800 139262411 + 0.75 NA Intergenic Intergenic -28583 NR_027070 140464 Hs.721270 NR_027070 PISRT1 NCRNA00195 PISRT1 lncRNA ncRNA 147.75-35 chr14 57891976 57892235 + 0.75 NA Intergenic Intergenic -26013 NM_001306087 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 164.5-102 chrX 139533226 139533555 + 0.75 NA intron (NM_000133, intron 1 of 7) MIRb|SINE|MIR 2654 NM_000133 2158 Hs.522798 NM_000133 ENSG00000101981 F9 F9 p22|FIX|HEMB|P19|PTC|THPH8 coagulation factor IX protein-coding 206.5-15 chr14 54802444 54802921 + 0.75 NA Intergenic Intergenic 47849 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 193.75-43 chr4 11601334 11601746 + 0.75 NA Intergenic LTR40a|LTR|ERVL 167928 NR_146995 105374484 Hs.581972 NR_146995 ENSG00000248300 LINC02360 - long intergenic non-protein coding RNA 2360 ncRNA 172.25-42 chr3 103193639 103193983 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 330305 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 180-23 chr14 65616210 65616674 + 0.75 NA intron (NM_004480, intron 4 of 9) intron (NM_004480, intron 4 of 9) 145340 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 185.5-49 chr4 95598656 95598957 + 0.75 NA Intergenic Intergenic -49833 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 199.25-58 chr6 90724453 90724813 + 0.75 NA Intergenic Intergenic -137561 NM_145333 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 299.75-4 chr3 107107272 107107857 + 0.75 NA Intergenic Intergenic 133074 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 214.5-9 chr13 105664626 105664996 + 0.75 NA Intergenic Intergenic -42019 NR_120418 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 230.75-36 chr6 49650698 49651245 + 0.75 NA Intergenic Intergenic -14097 NM_000324 6005 Hs.120950 NM_000324 ENSG00000112077 RHAG CD241|OHS|OHST|RH2|RH50A|RHNR|Rh50|Rh50GP|SLC42A1 Rh associated glycoprotein protein-coding 199.75-26 chr2 3821157 3821505 + 0.75 NA intron (NM_001287444, intron 10 of 10) LTR7|LTR|ERV1 114489 NM_001365580 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 163.5-118 chr8 141746806 141747199 + 0.75 NA Intergenic L1ME1|LINE|L1 39311 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 288-4 chr17 69890848 69891572 + 0.75 NA intron (NR_109971, intron 5 of 5) MLT1F2|LTR|ERVL-MaLR -70497 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 209.75-33 chr5 108113341 108113831 + 0.75 NA intron (NM_001163315, intron 6 of 8) intron (NM_001163315, intron 6 of 8) 268512 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 170.25-12 chr12 20167106 20167454 + 0.75 NA Intergenic Intergenic -39379 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 199.75-14 chr12 79036281 79036783 + 0.75 NA intron (NM_001291901, intron 2 of 9) intron (NM_001291901, intron 2 of 9) -9160 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 214-20 chr2 9024499 9024833 + 0.75 NA Intergenic Intergenic -20982 NM_138799 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 201.5-33 chr22 34042194 34042645 + 0.75 NA Intergenic L1MB8|LINE|L1 -119531 NM_001362951 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 187.5-39 chr2 181123742 181124066 + 0.75 NA promoter-TSS (NR_130784) promoter-TSS (NR_130784) 67 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 165.75-40 chr2 11220893 11221273 + 0.75 NA intron (NM_001321643, intron 9 of 32) intron (NM_001321643, intron 9 of 32) 65616 NM_001282711 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 154-38 chr17 41156021 41156263 + 0.75 NA intron (NM_001277332, intron 1 of 5) L1PB4|LINE|L1 4606 NM_032524 84616 Hs.307022 NM_032524 ENSG00000171396 KRTAP4-4 KAP4.13|KAP4.4|KRTAP4-13|KRTAP4.13|KRTAP4.4 keratin associated protein 4-4 protein-coding 154.5-91 chr8 9448907 9449294 + 0.75 NA Intergenic MIRc|SINE|MIR -106812 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 195-21 chr15 57101807 57102270 + 0.75 NA intron (NM_207038, intron 5 of 19) MER58D|DNA|hAT-Charlie -117392 NM_001306220 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 173-46 chr3 37979874 37980245 + 0.75 NA intron (NM_001008392, intron 7 of 7) intron (NM_001008392, intron 7 of 7) 10655 NR_029499 407015 NR_029499 ENSG00000199075 MIR26A1 MIR26A|MIRN26A1|mir-26a-1 microRNA 26a-1 ncRNA 210.5-29 chr3 175099292 175099600 + 0.75 NA intron (NM_207015, intron 2 of 13) intron (NM_207015, intron 2 of 13) 15796 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 156.25-18 chr12 81307329 81307629 + 0.75 NA intron (NM_001220474, intron 20 of 30) intron (NM_001220474, intron 20 of 30) 28290 NR_120491 102724663 Hs.667264 NR_120491 ENSG00000257467 PPFIA2-AS1 - PPFIA2 antisense RNA 1 ncRNA 157.5-75 chr5 56573951 56574190 + 0.75 NA intron (NR_161255, intron 1 of 5) MSTA-int|LTR|ERVL-MaLR 32186 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 239.5-27 chr4 89882305 89882749 + 0.75 NA intron (NM_001371403, intron 1 of 8) intron (NM_001371403, intron 1 of 8) 3016 NM_001371403 170.5-45 chr22 28564925 28565333 + 0.75 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 105260 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 227.5-26 chr7 12462469 12462940 + 0.75 NA Intergenic L1M4|LINE|L1 -33725 NR_136261 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 199.5-14 chr15 51047348 51047730 + 0.75 NA intron (NR_146310, intron 1 of 2) intron (NR_146310, intron 1 of 2) 10051 NR_146310 109729174 NR_146310 ENSG00000259240 MIR4713HG - MIR4713 host gene ncRNA 239.5-35 chr8 58788141 58788668 + 0.75 NA Intergenic Intergenic -128551 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 157.75-15 chr10 44817559 44817912 + 0.75 NA intron (NR_033842, intron 7 of 7) intron (NR_033842, intron 7 of 7) -93581 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 255-12 chr6 103346351 103347068 + 0.75 NA Intergenic Intergenic 1512837 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 167.75-67 chr4 141800080 141800573 + 0.75 NA Intergenic Intergenic 163743 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 163.5-99 chr6 47955102 47955392 + 0.75 NA intron (NM_207499, intron 2 of 2) intron (NM_207499, intron 2 of 2) 113442 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 186-20 chr2 3135943 3136358 + 0.75 NA Intergenic AluJb|SINE|Alu -10124 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 192.75-3 chr1 236605885 236606419 + 0.75 NA Intergenic Intergenic -1636 NM_018072 55127 Hs.708114 NM_018072 ENSG00000119285 HEATR1 BAP28|UTP10 HEAT repeat containing 1 protein-coding 187.75-49 chr3 114661298 114661760 + 0.75 NA intron (NM_001348803, intron 6 of 13) intron (NM_001348803, intron 6 of 13) -36584 NM_001164346 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 202.25-20 chr14 73774974 73775415 + 0.75 NA intron (NM_001043318, intron 1 of 11) L2b|LINE|L2 12014 NM_001043318 91748 Hs.594157 NM_194278 ENSG00000156030 ELMSAN1 C14orf117|C14orf43|LSR68|MIDEAS|c14_5541 ELM2 and Myb/SANT domain containing 1 protein-coding 264.5-20 chr4 63388165 63388797 + 0.75 NA Intergenic Intergenic 1020969 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 206.5-40 chr5 157539609 157540128 + 0.75 NA intron (NM_033274, intron 3 of 22) L2b|LINE|L2 35907 NM_033274 8728 Hs.483944 NM_023038 ENSG00000135074 ADAM19 FKSG34|MADDAM|MLTNB ADAM metallopeptidase domain 19 protein-coding 174.25-34 chr2 215770543 215770985 + 0.75 NA intron (NR_037195, intron 1 of 9) intron (NR_037195, intron 1 of 9) 52721 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 146.75-3 chr1 61792894 61793213 + 0.75 NA intron (NM_001350145, intron 9 of 43) intron (NM_001350145, intron 9 of 43) 50573 NM_001350145 10207 Hs.478125 NM_005799 ENSG00000132849 PATJ Cipp|INADL|InaD-like|hINADL PATJ crumbs cell polarity complex component protein-coding 238.25-19 chr2 236925210 236925556 + 0.75 NA Intergenic Intergenic 130784 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 230.25-23 chr20 51236374 51236726 + 0.75 NA Intergenic Intergenic -213443 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 201.5-25 chr2 33030366 33030693 + 0.75 NA intron (NM_206943, intron 3 of 33) intron (NM_206943, intron 3 of 33) 83576 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 180.25-56 chr5 57785358 57785699 + 0.75 NA Intergenic Intergenic 113634 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 215.75-28 chr5 41188163 41188708 + 0.75 NA intron (NM_000065, intron 5 of 17) L1MB7|LINE|L1 25097 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 320.75-4 chr12 59877516 59878208 + 0.75 NA Intergenic Intergenic 188492 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 233.25-3 chr1 95984425 95984957 + 0.75 NA Intergenic Intergenic -7377 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 194-22 chr15 101729185 101729788 + 0.75 NA Intergenic AluSc|SINE|Alu -5013 NM_152334 123283 Hs.657163 NM_152334 ENSG00000185418 TARSL2 - threonyl-tRNA synthetase like 2 protein-coding 188.25-40 chr4 75801576 75802082 + 0.75 NA intron (NM_003715, intron 17 of 23) AluSq|SINE|Alu 77307 NM_003715 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 154.25-78 chr7 81775762 81776176 + 0.75 NA Intergenic Intergenic -5922 NM_001010932 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 184-45 chr5 121881634 121882068 + 0.75 NA Intergenic Intergenic 29969 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 179-23 chr2 25443923 25444363 + 0.75 NA intron (NM_033147, intron 12 of 19) intron (NM_033147, intron 12 of 19) -101553 NM_175629 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 242-5 chr10 59695263 59695842 + 0.75 NA intron (NM_194298, intron 1 of 5) intron (NM_194298, intron 1 of 5) 14339 NM_194298 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 262-14 chrX 116378833 116379301 + 0.75 NA Intergenic Intergenic -57539 NM_007231 11254 Hs.522109 NM_007231 ENSG00000268104 SLC6A14 BMIQ11 solute carrier family 6 member 14 protein-coding 223.25-40 chr9 134120166 134120486 + 0.75 NA Intergenic AluSz|SINE|Alu -15756 NM_017588 11091 Hs.397638 NM_017588 ENSG00000196363 WDR5 BIG-3|CFAP89|SWD3 WD repeat domain 5 protein-coding 229.5-40 chr7 40528072 40528701 + 0.75 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 393410 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 152.75-7 chr1 82723654 82723901 + 0.75 NA Intergenic Intergenic -179406 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 222.25-2 chr1 48395730 48396230 + 0.75 NA intron (NM_019073, intron 7 of 12) L1MB3|LINE|L1 76224 NM_001286238 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 178-72 chr8 135323756 135324215 + 0.75 NA Intergenic Intergenic 89854 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 304.25-7 chr2 179029333 179029986 + 0.75 NA intron (NM_001316745, intron 2 of 11) intron (NM_001316745, intron 2 of 11) 20478 NM_001316745 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 170-31 chr2 45358168 45358421 + 0.75 NA Intergenic Intergenic -103353 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 213.5-47 chr8 141895597 141895980 + 0.75 NA Intergenic L1MD2|LINE|L1 -109475 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 193.25-32 chr2 179554744 179555008 + 0.75 NA intron (NR_148056, intron 3 of 9) L1ME3A|LINE|L1 7712 NM_001113398 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 169.75-28 chr13 60346871 60347183 + 0.75 NA Intergenic Intergenic -49430 NM_001146071 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 246.5-20 chr4 102508535 102508951 + 0.75 NA intron (NM_001319226, intron 1 of 23) intron (NM_001319226, intron 1 of 23) -6257 NR_136202 105377621 Hs.15833 NR_136202 LOC105377621 - uncharacterized LOC105377621 ncRNA 249.5-15 chr2 210078050 210078588 + 0.75 NA intron (NM_001307976, intron 5 of 13) Tigger3a|DNA|TcMar-Tigger 48397 NR_110291 101928020 Hs.635556 NR_110291 LOC101928020 - uncharacterized LOC101928020 ncRNA 157.75-109 chr8 106103643 106103919 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -43278 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 188.75-33 chr2 160130877 160131382 + 0.75 NA intron (NM_001282390, intron 9 of 13) intron (NM_001282390, intron 9 of 13) -68514 NM_001007267 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 193.5-20 chr14 47463537 47463872 + 0.75 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -120458 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 221-26 chr5 55708480 55708856 + 0.75 NA intron (NM_001349382, intron 2 of 17) intron (NM_001349382, intron 2 of 17) 3656 NM_173514 153129 Hs.742101 NM_173514 ENSG00000177058 SLC38A9 URLC11 solute carrier family 38 member 9 protein-coding 150-99 chr9 110913321 110913689 + 0.75 NA intron (NM_001351417, intron 5 of 5) (TA)n|Simple_repeat|Simple_repeat 123275 NM_001351420 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 181.5-14 chr11 80838503 80838961 + 0.75 NA Intergenic Intergenic -75929 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 212-21 chr2 205075164 205075522 + 0.75 NA intron (NM_205863, intron 4 of 21) intron (NM_205863, intron 4 of 21) 529868 NM_205863 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 206.75-55 chr8 112490972 112491324 + 0.75 NA intron (NM_001363185, intron 29 of 66) intron (NM_001363185, intron 29 of 66) -152345 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 232.5-12 chr13 91874473 91874938 + 0.75 NA intron (NM_004466, intron 5 of 7) intron (NM_004466, intron 5 of 7) 476084 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 193.25-5 chr1 189191936 189192478 + 0.75 NA Intergenic AluY|SINE|Alu 1283803 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 267.75-12 chr4 103675990 103676540 + 0.75 NA intron (NM_001059, intron 1 of 4) intron (NM_001059, intron 1 of 4) 43720 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 223.5-38 chr6 137671506 137671882 + 0.75 NA intron (NR_125867, intron 1 of 3) Zaphod|DNA|hAT-Tip100 6048 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 205.5-21 chr2 59844237 59844668 + 0.75 NA Intergenic Intergenic 538584 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 261.5-8 chr18 43029671 43030170 + 0.75 NA intron (NM_001272077, intron 2 of 5) intron (NM_001272077, intron 2 of 5) 85765 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 171.75-16 chr11 60690187 60690449 + 0.75 NA Intergenic L1MEc|LINE|L1 -9294 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 188-12 chr10 106921817 106922229 + 0.75 NA intron (NM_001206569, intron 2 of 25) intron (NM_001206569, intron 2 of 25) 242683 NM_001206570 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 230.25-6 chr10 68346523 68347037 + 0.75 NA intron (NR_103476, intron 16 of 18) intron (NR_103476, intron 16 of 18) -13852 NM_001033083 64081 Hs.198158 NM_022129 ENSG00000108187 PBLD HEL-S-306|MAWBP|MAWDBP phenazine biosynthesis like protein domain containing protein-coding 286.75-9 chr4 62763594 62764314 + 0.75 NA Intergenic L1ME2|LINE|L1 -602189 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 205.75-2 chr1 71132365 71132789 + 0.75 NA intron (NR_046217, intron 2 of 3) L1MA9|LINE|L1 51253 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 263.5-10 chr14 51217566 51218146 + 0.75 NA Intergenic AluSg|SINE|Alu -22391 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 199-19 chr2 144530054 144530664 + 0.75 NA intron (NR_110570, intron 1 of 2) intron (NR_110570, intron 1 of 2) -5915 NR_136320 105373656 Hs.734683 NR_136320 LOC105373656 - uncharacterized LOC105373656 ncRNA 174.5-88 chr8 120723653 120723999 + 0.75 NA intron (NM_021021, intron 1 of 6) MIRb|SINE|MIR -37427 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 159.75-75 chr4 131334125 131334535 + 0.75 NA Intergenic Intergenic -430508 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 199-13 chr18 60649692 60650024 + 0.75 NA Intergenic Intergenic -277083 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 158.5-12 chr11 74231785 74232172 + 0.75 NA intron (NM_001271593, intron 7 of 13) L2c|LINE|L2 60689 NM_016147 51400 Hs.503251 NM_016147 ENSG00000214517 PPME1 ABDH19|PME-1 protein phosphatase methylesterase 1 protein-coding 163-77 chr7 78534089 78534436 + 0.75 NA intron (NM_001301128, intron 3 of 20) intron (NM_001301128, intron 3 of 20) 187020 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 241.75-2 chr1 82627321 82627680 + 0.75 NA Intergenic MER41A|LTR|ERV1 -275683 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 176.25-67 chr8 105064925 105065188 + 0.75 NA Intergenic Intergenic -253382 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 151.75-93 chr6 133460959 133461269 + 0.75 NA exon (NM_001301012, exon 5 of 18) exon (NM_001301012, exon 5 of 18) 219615 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 147.5-42 chr2 73591247 73591486 + 0.75 NA intron (NM_015120, intron 16 of 22) intron (NM_015120, intron 16 of 22) 51056 NM_003960 9027 Hs.14637 NM_003960 ENSG00000144035 NAT8 ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510 N-acetyltransferase 8 (putative) protein-coding 148.75-10 chr10 52082817 52083185 + 0.75 NA intron (NM_001098512, intron 7 of 17) L1MC5|LINE|L1 231127 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 218.25-22 chr20 53967928 53968286 + 0.75 NA intron (NM_001366295, intron 7 of 10) FLAM_A|SINE|Alu 90913 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 172.5-39 chr2 213681977 213682272 + 0.75 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -75943 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 173.75-50 chr4 63959565 63959945 + 0.75 NA Intergenic L2a|LINE|L2 449695 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 185.25-60 chr4 76158730 76159175 + 0.75 NA 3' UTR (NM_005506, exon 12 of 12) 3' UTR (NM_005506, exon 12 of 12) -10437 NR_103782 53371 Hs.430435 NM_017426 ENSG00000138750 NUP54 - nucleoporin 54 protein-coding 160.25-68 chr7 8875234 8875594 + 0.75 NA Intergenic Intergenic 441805 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 211.75-25 chr4 96654279 96654775 + 0.75 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 343824 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 155.5-95 chr6 131391365 131391706 + 0.75 NA Intergenic L2a|LINE|L2 141131 NM_004842 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 245.25-17 chr3 144048295 144048840 + 0.75 NA Intergenic Intergenic 75486 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 280-8 chr4 128571862 128572290 + 0.75 NA Intergenic Intergenic 144060 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 160.75-11 chr10 56327663 56328058 + 0.75 NA Intergenic L2a|LINE|L2 33399 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 210-46 chr5 83974539 83974904 + 0.75 NA intron (NM_001278642, intron 8 of 9) intron (NM_001278642, intron 8 of 9) -253866 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 252.25-5 chr15 54068731 54069345 + 0.75 NA intron (NM_001329919, intron 2 of 31) intron (NM_001329919, intron 2 of 31) 56390 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 229.5-3 chr10 35301534 35302145 + 0.75 NA intron (NM_181698, intron 3 of 11) AluJb|SINE|Alu -34670 NM_145012 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 203.75-42 chr7 14023537 14023946 + 0.75 NA Intergenic Intergenic -32316 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 151.75-92 chr6 124019518 124019848 + 0.75 NA intron (NM_001040214, intron 1 of 6) intron (NM_001040214, intron 1 of 6) 215818 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 197-4 chr12 74981079 74981578 + 0.75 NA Intergenic Intergenic 228420 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 153.75-55 chr4 60133015 60133373 + 0.75 NA Intergenic Intergenic -789425 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 172.75-17 chr12 39064235 39064534 + 0.75 NA Intergenic Intergenic -158793 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 248.5-28 chr8 115268243 115268934 + 0.75 NA Intergenic Intergenic 399425 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 163.25-14 chr10 68112755 68113174 + 0.75 NA intron (NR_045663, intron 1 of 17) intron (NR_045663, intron 1 of 17) 3476 NR_045663 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|NEM11|RCM4 myopalladin protein-coding 269.25-21 chr7 127348428 127349045 + 0.75 NA Intergenic Intergenic 43972 NM_176814 168850 Hs.159006 NM_176814 ENSG00000048405 ZNF800 - zinc finger protein 800 protein-coding 245-12 chr2 115693896 115694448 + 0.75 NA intron (NM_001321912, intron 8 of 25) intron (NM_001321912, intron 8 of 25) 350357 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 225.25-23 chr22 29273835 29274304 + 0.75 NA intron (NM_001163285, intron 4 of 16) intron (NM_001163285, intron 4 of 16) 5801 NM_001163287 2130 Hs.374477 NM_005243 ENSG00000182944 EWSR1 EWS|EWS-FLI1|bK984G1.4 EWS RNA binding protein 1 protein-coding 180-30 chr2 56411929 56412351 + 0.75 NA Intergenic L1PB4|LINE|L1 -226370 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 211.5-3 chr1 87157024 87157462 + 0.75 NA intron (NR_026989, intron 2 of 2) intron (NR_026989, intron 2 of 2) 25317 NR_026987 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 180.75-50 chr5 76234203 76234473 + 0.75 NA intron (NM_014979, intron 4 of 12) intron (NM_014979, intron 4 of 12) 150955 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 167-43 chr2 76943823 76944214 + 0.75 NA intron (NR_146416, intron 1 of 1) L2c|LINE|L2 -41947 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 170-61 chr7 68362362 68362779 + 0.75 NA Intergenic MER4D|LTR|ERV1 342317 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 153.75-51 chr3 183264699 183265048 + 0.75 NA intron (NM_032047, intron 1 of 1) intron (NM_032047, intron 1 of 1) 11620 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 164.5-76 chr6 38754075 38754390 + 0.75 NA intron (NM_001371, intron 8 of 91) intron (NM_001371, intron 8 of 91) 38921 NM_001206927 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 149.75-70 chr5 8287664 8287984 + 0.75 NA Intergenic Intergenic 169740 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 200.25-44 chr6 27416032 27416322 + 0.75 NA intron (NR_144688, intron 5 of 8) intron (NR_144688, intron 5 of 8) 27459 NM_001322293 346157 Hs.651176 NM_001013719 ENSG00000124613 ZNF391 dJ153G14.3 zinc finger protein 391 protein-coding 195.25-49 chr6 164553507 164554017 + 0.75 NA Intergenic (AATGATA)n|Simple_repeat|Simple_repeat 268301 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 147.5-32 chr17 18212857 18213192 + 0.75 NA Intergenic AluSz|SINE|Alu -12611 NM_004140 3996 Hs.513983 NM_004140 ENSG00000131899 LLGL1 DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1 LLGL scribble cell polarity complex component 1 protein-coding 170.75-18 chr13 96720148 96720593 + 0.75 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 263802 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 218.25-17 chr18 47786065 47786368 + 0.75 NA Intergenic L1MD3|LINE|L1 144443 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 213.25-17 chr17 70836330 70836854 + 0.75 NA Intergenic Tigger2a|DNA|TcMar-Tigger 365587 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 255.25-2 chr1 104641546 104641996 + 0.75 NA Intergenic MLT1N2|LTR|ERVL-MaLR 568748 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 170.75-65 chr7 78776209 78776602 + 0.75 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -232583 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 206.25-25 chr22 27087564 27088004 + 0.75 NA Intergenic Intergenic -27266 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 162-8 chr10 87771426 87771864 + 0.75 NA intron (NM_001321967, intron 6 of 9) intron (NM_001321967, intron 6 of 9) 46586 NR_135914 84896 Hs.435948 NM_032810 ENSG00000138138 ATAD1 AFDC1|FNP001|HKPX4|THORASE ATPase family AAA domain containing 1 protein-coding 272.75-19 chr8 134762158 134762549 + 0.75 NA Intergenic Intergenic 38254 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 236.5-12 chr18 39302889 39303443 + 0.75 NA intron (NR_024391, intron 3 of 3) intron (NR_024391, intron 3 of 3) 319009 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 256.25-20 chrX 44616721 44617171 + 0.75 NA Intergenic Intergenic -74087 NM_173794 139341 Hs.7549 NM_173794 ENSG00000069509 FUNDC1 - FUN14 domain containing 1 protein-coding 188.75-35 chr22 24357015 24357405 + 0.75 NA intron (NM_015330, intron 11 of 16) L1MB4|LINE|L1 15102 NM_001254733 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1|TBHS sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 227.75-23 chr3 46194509 46195025 + 0.75 NA Intergenic Intergenic 13546 NM_001295 1230 Hs.301921 NM_001295 ENSG00000163823 CCR1 CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1 C-C motif chemokine receptor 1 protein-coding 193.5-73 chr8 83424573 83425069 + 0.75 NA Intergenic MLT1E1A-int|LTR|ERVL-MaLR 21063 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 205.75-14 chr10 91253820 91254360 + 0.75 NA intron (NM_001256549, intron 6 of 9) intron (NM_001256549, intron 6 of 9) 33427 NM_032373 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 293.5-4 chr2 24744290 24744864 + 0.75 NA intron (NM_001362950, intron 19 of 23) Charlie24|DNA|hAT-Charlie -48538 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 338-3 chr3 55466563 55467333 + 0.75 NA 3' UTR (NM_001256105, exon 5 of 5) 3' UTR (NM_001256105, exon 5 of 5) 14450 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 243.75-9 chr2 41311266 41311826 + 0.75 NA Intergenic L1ME1|LINE|L1 -566009 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 237.25-23 chr8 121461107 121461578 + 0.75 NA Intergenic Charlie8|DNA|hAT-Charlie -178004 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 154.5-102 chr9 130408864 130409248 + 0.75 NA intron (NM_001291815, intron 84 of 97) intron (NM_001291815, intron 84 of 97) -35651 NM_000050 445 Hs.160786 NM_000050 ENSG00000130707 ASS1 ASS|CTLN1 argininosuccinate synthase 1 protein-coding 177.75-54 chr4 104275696 104276097 + 0.75 NA Intergenic Intergenic -215069 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 146.5-75 chr4 62657322 62657532 + 0.75 NA Intergenic AluSx|SINE|Alu -495662 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 187.5-3 chr1 109566117 109566464 + 0.75 NA intron (NM_006496, intron 1 of 8) intron (NM_006496, intron 1 of 8) 17675 NM_006496 2773 Hs.73799 NM_006496 ENSG00000065135 GNAI3 87U6|ARCND1 G protein subunit alpha i3 protein-coding 160.75-33 chr14 40075581 40076054 + 0.75 NA Intergenic Intergenic -643317 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 233.25-19 chr2 215490186 215490621 + 0.75 NA Intergenic Intergenic 36696 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 229.5-9 chr12 86300210 86300849 + 0.75 NA intron (NM_001351286, intron 4 of 7) intron (NM_001351286, intron 4 of 7) -43230 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 297.75-13 chr5 138118668 138119399 + 0.75 NA intron (NM_003551, intron 4 of 5) AluSz|SINE|Alu 20395 NM_003551 8382 Hs.730856 NM_003551 ENSG00000112981 NME5 NM23-H5|NM23H5|RSPH23 NME/NM23 family member 5 protein-coding 188-47 chr4 162971163 162971585 + 0.75 NA Intergenic Intergenic 122254 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 237.5-5 chr12 65068241 65068578 + 0.75 NA intron (NM_007191, intron 4 of 9) intron (NM_007191, intron 4 of 9) 52896 NM_007191 11197 Hs.284122 NM_007191 ENSG00000156076 WIF1 WIF-1 WNT inhibitory factor 1 protein-coding 217.75-16 chr2 29894694 29895140 + 0.75 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 26669 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 149.5-52 chr20 22775510 22775917 + 0.75 NA Intergenic Intergenic -90369 NR_146528 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 176.25-6 chr10 12469900 12470240 + 0.75 NA intron (NM_001351032, intron 3 of 11) intron (NM_001351032, intron 3 of 11) 81088 NM_001351032 57118 Hs.600547 NM_020397 ENSG00000183049 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin dependent protein kinase ID protein-coding 153.75-73 chr6 61651197 61651427 + 0.75 NA intron (NR_146874, intron 13 of 13) Tigger4b|DNA|TcMar-Tigger 77182 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 248-2 chr11 13512922 13513500 + 0.75 NA Intergenic L1PA17|LINE|L1 -17036 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 209.5-5 chr10 58627401 58627958 + 0.75 NA intron (NM_001080512, intron 2 of 20) intron (NM_001080512, intron 2 of 20) -87336 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 204-5 chr10 64482976 64483325 + 0.75 NA Intergenic Intergenic -342378 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 216-6 chr1 186350746 186351193 + 0.75 NA intron (NM_003292, intron 20 of 50) L1MEc|LINE|L1 24284 NM_003292 7175 Hs.279640 NM_003292 ENSG00000047410 TPR - translocated promoter region, nuclear basket protein protein-coding 203-17 chr18 13684881 13685349 + 0.75 NA intron (NM_152352, intron 1 of 3) MER4E1|LTR|ERV1 41443 NM_001098801 125228 Hs.13034 NM_152352 ENSG00000177150 FAM210A C18orf19|HsT2329 family with sequence similarity 210 member A protein-coding 297.75-22 chr8 137751943 137752483 + 0.75 NA Intergenic THE1D|LTR|ERVL-MaLR 331332 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 176.25-22 chr13 24645332 24645767 + 0.75 NA Intergenic L1M5|LINE|L1 -34859 NM_001676 479 Hs.147111 NM_001676 ENSG00000075673 ATP12A ATP1AL1|HK ATPase H+/K+ transporting non-gastric alpha2 subunit protein-coding 154.75-91 chr7 53434771 53435067 + 0.75 NA Intergenic Intergenic 377012 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 195-37 chr4 148975026 148975383 + 0.75 NA Intergenic Intergenic -32826 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 172.25-55 chr4 86385350 86385727 + 0.75 NA intron (NM_002753, intron 1 of 13) intron (NM_002753, intron 1 of 13) -14671 NM_001318068 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 157.25-37 chr17 59896849 59897235 + 0.75 NA intron (NM_001272044, intron 2 of 15) MIRb|SINE|MIR 3921 NR_161458 6198 Hs.463642 NM_003161 ENSG00000108443 RPS6KB1 PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha ribosomal protein S6 kinase B1 protein-coding 189-37 chr20 39662309 39662751 + 0.75 NA Intergenic Intergenic -341931 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 214.75-39 chr5 106260900 106261290 + 0.75 NA Intergenic Intergenic 749919 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 146.5-110 chr9 28302811 28303197 + 0.75 NA intron (NM_001354574, intron 4 of 5) intron (NM_001354574, intron 4 of 5) 416301 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 226.5-30 chr9 33845988 33846466 + 0.75 NA intron (NM_017811, intron 1 of 4) AluSx|SINE|Alu 29067 NM_017811 54926 Hs.643648 NM_017811 ENSG00000107341 UBE2R2 CDC34B|E2-CDC34B|UBC3B ubiquitin conjugating enzyme E2 R2 protein-coding 210-21 chr18 71597227 71597640 + 0.75 NA Intergenic Intergenic -18477 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 310.25-4 chr4 12257341 12257930 + 0.75 NA Intergenic MIRb|SINE|MIR 34184 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 199.25-5 chr10 110688672 110688976 + 0.75 NA intron (NM_001134363, intron 1 of 13) L1MD3|LINE|L1 44488 NM_001134363 282996 Hs.116630 NM_001134363 ENSG00000203867 RBM20 - RNA binding motif protein 20 protein-coding 380.25-2 chr12 9039828 9040677 + 0.75 NA Intergenic Intergenic 24818 NR_034140 253128 Hs.408739 NM_001039381 ENSG00000214851 LINC00612 C12orf33 long intergenic non-protein coding RNA 612 ncRNA 216.5-21 chr2 232009523 232010070 + 0.75 NA intron (NR_046477, intron 1 of 18) L1M4a2|LINE|L1 48083 NR_046476 129563 Hs.732236 NM_152383 ENSG00000144535 DIS3L2 FAM6A|PRLMNS|hDIS3L2 DIS3 like 3'-5' exoribonuclease 2 protein-coding 236-8 chr13 79860804 79861497 + 0.75 NA Intergenic MLT2B3|LTR|ERVL -11436 NR_120413 101927195 Hs.342412 NR_120413 ENSG00000229175 LINC00382 TCONS_00021500 long intergenic non-protein coding RNA 382 ncRNA 204-13 chr16 61072182 61072695 + 0.75 NA Intergenic Intergenic -16672 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 166-34 chr19 53983162 53983499 + 0.75 NA TTS (NR_030632) TTS (NR_030632) 1023 NR_030632 100126325 NR_030632 ENSG00000284583 MIR935 MIRN935|hsa-mir-935|mir-935 microRNA 935 ncRNA 218.5-35 chr6 55560717 55561094 + 0.75 NA intron (NR_109867, intron 1 of 3) intron (NR_109867, intron 1 of 3) 18309 NM_001287753 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 233.75-34 chr8 71367491 71367948 + 0.75 NA intron (NM_001370336, intron 2 of 17) intron (NM_001370336, intron 2 of 17) -5650 NM_000503 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 168.75-92 chr6 159883539 159883885 + 0.75 NA Intergenic Intergenic -7276 NM_002377 4142 Hs.99900 NM_002377 ENSG00000130368 MAS1 MAS|MGRA MAS1 proto-oncogene, G protein-coupled receptor protein-coding 157-3 chr1 86795660 86795895 + 0.75 NA Intergenic LTR16C|LTR|ERVL 91201 NM_016009 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like, endophilin B1 protein-coding 170.25 chr1 103223792 103224249 + 0.75 NA Intergenic MSTB1|LTR|ERVL-MaLR -115498 NR_134980 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 176.25-59 chr8 5505052 5505562 + 0.75 NA Intergenic L1ME1|LINE|L1 -510393 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 200.5-30 chr2 14203374 14203769 + 0.75 NA Intergenic L1MEh|LINE|L1 197387 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 159.5-24 chr15 25400411 25400673 + 0.75 NA intron (NM_001354523, intron 4 of 13) MER2|DNA|TcMar-Tigger 37687 NM_001354526 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 162-79 chr8 123075842 123076255 + 0.75 NA intron (NM_001363149, intron 1 of 21) intron (NM_001363149, intron 1 of 21) 2799 NM_001363149 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 166.5-26 chr14 77750696 77750949 + 0.75 NA intron (NM_001318844, intron 3 of 12) intron (NM_001318844, intron 3 of 12) -9946 NR_161323 283579 Hs.375834 NM_174943 ENSG00000197734 C14orf178 - chromosome 14 open reading frame 178 ncRNA 171.75-45 chr20 54104784 54105084 + 0.75 NA Intergenic Intergenic -34169 NM_003657 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 162-54 chr4 61025073 61025421 + 0.75 NA Intergenic L1M5|LINE|L1 102628 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 251.25-31 chr8 126112621 126113041 + 0.75 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -161634 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 254.5-30 chr8 59520048 59520585 + 0.75 NA Intergenic L1MEg|LINE|L1 401106 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 243-11 chr2 165335679 165336265 + 0.75 NA intron (NM_001040143, intron 15 of 27) L1MB7|LINE|L1 41917 NM_021007 6326 Hs.93485 NM_021007 ENSG00000136531 SCN2A BFIC3|BFIS3|BFNIS|EIEE11|HBA|HBSCI|HBSCII|NAC2|Na(v)1.2|Nav1.2|SCN2A1|SCN2A2 sodium voltage-gated channel alpha subunit 2 protein-coding 159.5-44 chr2 148845770 148846117 + 0.75 NA Intergenic L1PA16|LINE|L1 -29284 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 289.25-6 chr2 128388110 128388795 + 0.75 NA Intergenic Intergenic -69584 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 153.25-38 chr14 64020310 64020704 + 0.75 NA intron (NM_015180, intron 35 of 114) intron (NM_015180, intron 35 of 114) 74618 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 213.75-33 chr6 38094423 38094865 + 0.75 NA intron (NM_021943, intron 4 of 5) intron (NM_021943, intron 4 of 5) 274917 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 163.5-46 chr17 65885140 65885443 + 0.75 NA intron (NM_001353129, intron 20 of 26) intron (NM_001353129, intron 20 of 26) -58748 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 183.5-64 chr5 152734486 152734881 + 0.75 NA intron (NR_109877, intron 3 of 4) MSTD|LTR|ERVL-MaLR 237666 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 248.75-14 chr4 181821211 181821553 + 0.75 NA intron (NR_147188, intron 2 of 2) L2b|LINE|L2 8591 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 305.25-4 chr3 16674035 16674695 + 0.75 NA Intergenic MER4-int|LTR|ERV1 -68942 NM_001351 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 251.75-12 chr18 34785577 34786285 + 0.75 NA intron (NM_001198945, intron 4 of 10) intron (NM_001198945, intron 4 of 10) 29955 NM_001391 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 181.25-36 chr20 56080633 56080916 + 0.75 NA Intergenic L1ME1|LINE|L1 -75255 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 185.25-33 chr18 6250369 6250756 + 0.75 NA intron (NR_158611, intron 4 of 16) Charlie25|DNA|hAT-Charlie -6182 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 215.75-16 chr2 3757754 3758313 + 0.75 NA intron (NM_001287444, intron 6 of 10) intron (NM_001287444, intron 6 of 10) 51191 NM_001365580 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 182.75-79 chr9 113465601 113466107 + 0.75 NA intron (NM_001282923, intron 1 of 22) L1M6B|LINE|L1 2127 NM_001282923 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G protein signaling 3 protein-coding 225.75-5 chr10 85059652 85060254 + 0.75 NA Intergenic L1ME3C|LINE|L1 138952 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 222.5-46 chr6 96121074 96121576 + 0.75 NA intron (NM_006581, intron 2 of 2) intron (NM_006581, intron 2 of 2) 105351 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 164.75-43 chr2 86355676 86355982 + 0.75 NA Intergenic Intergenic -17746 NM_001164730 65055 Hs.368884 NM_022912 ENSG00000068615 REEP1 C2orf23|HMN5B|SPG31|Yip2a receptor accessory protein 1 protein-coding 256.5-18 chr7 145406395 145406878 + 0.75 NA Intergenic Intergenic -570583 NM_022445 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 209.75-29 chr4 32065123 32065685 + 0.75 NA intron (NR_125936, intron 1 of 2) L1MEg|LINE|L1 -42982 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 203.25-39 chr7 10310702 10311134 + 0.75 NA Intergenic Intergenic -391758 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 241-5 chr1 170542400 170542966 + 0.75 NA intron (NM_001320252, intron 5 of 6) intron (NM_001320252, intron 5 of 6) -10074 NR_125958 101928650 Hs.676662 NR_125958 GORAB-AS1 - GORAB antisense RNA 1 ncRNA 244.5-27 chr6 65203938 65204588 + 0.75 NA intron (NM_001292009, intron 12 of 43) L1PA15-16|LINE|L1 -97155 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 183.25-55 chr4 90931297 90931751 + 0.75 NA intron (NM_001145065, intron 9 of 10) intron (NM_001145065, intron 9 of 10) 696493 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 176.75-17 chr12 41621602 41621869 + 0.75 NA Intergenic Intergenic -142454 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 192-28 chr2 56160535 56160892 + 0.75 NA Intergenic AluJb|SINE|Alu -23277 NM_001080433 114800 Hs.117136 NM_001080433 ENSG00000055813 CCDC85A - coiled-coil domain containing 85A protein-coding 246.75-4 chr14 71835741 71836111 + 0.75 NA Intergenic L1ME1|LINE|L1 -96245 NM_001370289 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 242.75-17 chr2 95146423 95146980 + 0.75 NA 3' UTR (NM_032788, exon 5 of 5) 3' UTR (NM_032788, exon 5 of 5) 12884 NM_001318005 84874 Hs.355664 NM_032788 ENSG00000144026 ZNF514 - zinc finger protein 514 protein-coding 202.75-29 chr22 22783360 22783681 + 0.75 NA Intergenic Intergenic -39256 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 306.75-5 chr15 94461704 94462374 + 0.75 NA intron (NM_018349, intron 19 of 21) intron (NM_018349, intron 19 of 21) 106109 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 178-63 chr7 86023740 86024028 + 0.75 NA Intergenic Intergenic 602762 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 172-11 chr10 8271002 8271338 + 0.75 NA Intergenic Intergenic -2865 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 270.5-18 chr6 155424658 155425149 + 0.75 NA intron (NM_015718, intron 9 of 13) intron (NM_015718, intron 9 of 13) 30936 NM_015718 50508 Hs.247776 NM_015718 ENSG00000074771 NOX3 GP91-3|MOX-2 NADPH oxidase 3 protein-coding 168.5-24 chr13 89237731 89238124 + 0.75 NA intron (NR_047025, intron 1 of 3) L2|LINE|L2 -1037 NR_131229 105616982 Hs.564527 NR_131229 ENSG00000232225 LINC01047 - long intergenic non-protein coding RNA 1047 ncRNA 162.75-88 chr8 127513252 127513654 + 0.75 NA Intergenic Intergenic -31314 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 309.25-7 chr6 150451242 150452133 + 0.75 NA Intergenic MamRTE1|LINE|RTE-BovB 82675 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 235.75 chr1 81468126 81468492 + 0.75 NA intron (NM_001366008, intron 2 of 26) intron (NM_001366008, intron 2 of 26) 89393 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 195.5-34 chr2 237729777 237730168 + 0.75 NA intron (NM_001137550, intron 8 of 23) intron (NM_001137550, intron 8 of 23) 37767 NM_004735 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 168.25-66 chr6 50940694 50941107 + 0.75 NA Intergenic Intergenic 122029 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 307.75-5 chr3 98753083 98753535 + 0.75 NA intron (NM_001323366, intron 1 of 11) Tigger1|DNA|TcMar-Tigger -9998 NM_001323368 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 192-46 chr4 94932809 94933211 + 0.75 NA intron (NM_001203, intron 2 of 12) intron (NM_001203, intron 2 of 12) -63222 NM_001256792 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 247.25-18 chr6 34664030 34664586 + 0.75 NA intron (NM_022758, intron 1 of 3) intron (NM_022758, intron 1 of 3) -31846 NR_134625 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 209.5-3 chr1 102910648 102910975 + 0.75 NA intron (NM_001854, intron 54 of 66) MIR|SINE|MIR 197685 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 187.75-71 chr8 83715702 83716035 + 0.75 NA Intergenic L2|LINE|L2 312110 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 148-63 chr3 94961621 94961919 + 0.75 NA intron (NR_015400, intron 1 of 7) MER67C|LTR|ERV1 23507 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 243.25-7 chr14 43464482 43464939 + 0.75 NA Intergenic L1MA4|LINE|L1 1042573 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 152.75-93 chr7 113627830 113628150 + 0.75 NA Intergenic MER9a3|LTR|ERVK 291019 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 181.75-67 chr8 135014498 135014828 + 0.75 NA Intergenic Intergenic 164728 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 196.5-15 chr13 57189786 57190263 + 0.75 NA Intergenic Intergenic 22827 NM_001130404 729233 Hs.723090 NM_001130404 ENSG00000204918 PRR20B PRR20|PRR20A|PRR20C|PRR20D|PRR20E proline rich 20B protein-coding 225.75-19 chr3 178857685 178858236 + 0.75 NA intron (NR_126561, intron 2 of 5) ERVL-int|LTR|ERVL 2445 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 210.25-2 chr1 59266260 59266710 + 0.75 NA Intergenic MER72|LTR|ERV1 -30328 NM_001350797 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 230.25-2 chr1 39410349 39410830 + 0.75 NA exon (NM_015038, exon 1 of 1) exon (NM_015038, exon 1 of 1) 1516 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 164.5-86 chr7 48438322 48438619 + 0.75 NA intron (NM_152701, intron 42 of 61) intron (NM_152701, intron 42 of 61) 267012 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 273.25-3 chr10 64670304 64670910 + 0.75 NA Intergenic Intergenic -154921 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 313 chr1 117389339 117389858 + 0.75 NA intron (NM_006699, intron 1 of 12) intron (NM_006699, intron 1 of 12) 22149 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 159-34 chr2 64111716 64112061 + 0.75 NA intron (NM_020651, intron 1 of 6) intron (NM_020651, intron 1 of 6) 32532 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 190-9 chr10 107013610 107014074 + 0.75 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 150864 NM_001206570 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 154.25-30 chr13 97807297 97807613 + 0.75 NA Intergenic Intergenic -146220 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 169.75-75 chr9 27033308 27033679 + 0.75 NA intron (NM_025103, intron 13 of 19) AluJb|SINE|Alu -27821 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 154.75-13 chr10 96282161 96282535 + 0.75 NA Intergenic L1MC5a|LINE|L1 -10772 NM_013314 29760 Hs.665244 NM_013314 ENSG00000095585 BLNK AGM4|BASH|BLNK-S|LY57|SLP-65|SLP65|bca B cell linker protein-coding 335.75 chr1 190879963 190880909 + 0.75 NA Intergenic L2a|LINE|L2 255546 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 190-25 chr2 77298724 77299061 + 0.75 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 223484 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 277-7 chr4 12044154 12044675 + 0.75 NA Intergenic L1ME4b|LINE|L1 -179037 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 164-45 chr22 49019548 49019909 + 0.75 NA Intergenic Intergenic 152958 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 206.5-27 chr3 116883330 116883665 + 0.75 NA Intergenic L1ME1|LINE|L1 -33130 NR_039649 100616485 NR_039649 ENSG00000265433 MIR4447 - microRNA 4447 ncRNA 270-4 chr14 48812959 48813616 + 0.75 NA Intergenic L1MEg|LINE|L1 773093 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 164.75-26 chr16 63862379 63862834 + 0.75 NA Intergenic Intergenic 1259457 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 153.75-98 chr9 32145169 32145403 + 0.75 NA Intergenic L1PA6|LINE|L1 -239317 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 215.5-7 chr10 105623990 105624505 + 0.75 NA Intergenic Intergenic 196086 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 220-16 chr3 147545304 147545744 + 0.75 NA Intergenic Intergenic 124197 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 150.75-95 chr8 50234396 50234616 + 0.75 NA intron (NR_135797, intron 2 of 20) L1MD2|LINE|L1 70375 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 197.75 chr1 47751564 47751942 + 0.75 NA Intergenic Intergenic 245632 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 215.75-12 chr15 80664056 80664593 + 0.75 NA Intergenic L3|LINE|CR1 -30986 NM_021214 58489 Hs.459072 NM_021214 ENSG00000136379 ABHD17C FAM108C1 abhydrolase domain containing 17C protein-coding 246.5-24 chr7 39140331 39140813 + 0.75 NA intron (NM_001370959, intron 2 of 9) MLT1D|LTR|ERVL-MaLR -127005 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 169-19 chr15 38197126 38197406 + 0.75 NA Intergenic Intergenic -55570 NM_152594 161742 Hs.525781 NM_152594 ENSG00000166068 SPRED1 LGSS|NFLS|PPP1R147|hSpred1|spred-1 sprouty related EVH1 domain containing 1 protein-coding 205.75-11 chr10 8491652 8492002 + 0.75 NA Intergenic Intergenic 102564 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 260-12 chr8 74969391 74970001 + 0.75 NA Intergenic L2a|LINE|L2 -14809 NM_031461 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 302.5 chr1 158490680 158491315 + 0.75 NA Intergenic Intergenic 11119 NM_001004472 343406 Hs.451913 NM_001004472 ENSG00000198965 OR10R2 OR1-8|OR10R2Q olfactory receptor family 10 subfamily R member 2 protein-coding 193.75-4 chr1 199483168 199483655 + 0.75 NA Intergenic L2c|LINE|L2 334813 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 158.25-37 chr14 66902871 66903107 + 0.75 NA intron (NM_001024218, intron 5 of 21) L1P3|LINE|L1 -286451 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 259.75-8 chr12 76354731 76355330 + 0.75 NA 3' UTR (NM_001319652, exon 26 of 26) 3' UTR (NM_001319652, exon 26 of 26) -6615 NM_024685 79738 Hs.96322 NM_024685 ENSG00000179941 BBS10 C12orf58 Bardet-Biedl syndrome 10 protein-coding 156.25-68 chr5 24702996 24703388 + 0.75 NA Intergenic Intergenic -58214 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 242-21 chr5 147780811 147781272 + 0.75 NA intron (NM_001270934, intron 1 of 20) intron (NM_001270934, intron 1 of 20) 1687 NM_001270941 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 215.75 chr1 72075956 72076312 + 0.75 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) 206405 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 153.75-40 chr20 47068192 47068436 + 0.75 NA intron (NM_172110, intron 5 of 13) intron (NM_172110, intron 5 of 13) -98653 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 182.5-73 chr7 49449286 49449705 + 0.75 NA Intergenic MLT1A|LTR|ERVL-MaLR -324143 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 205.75-29 chr17 69227447 69227937 + 0.75 NA intron (NM_080282, intron 2 of 39) intron (NM_080282, intron 2 of 39) 7320 NR_130736 100133319 NR_130736 ENSG00000278873 PRO1804 - uncharacterized LOC100133319 ncRNA 167-35 chr18 21247383 21247805 + 0.75 NA intron (NM_001142966, intron 1 of 32) MIRc|SINE|MIR 5352 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 149.25-35 chr16 83035691 83035943 + 0.75 NA intron (NM_001220489, intron 3 of 12) MIRb|SINE|MIR -45519 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 162-13 chr11 22646354 22646661 + 0.75 NA Intergenic Intergenic -20104 NM_001143830 2620 Hs.711297 NM_005256 ENSG00000148935 GAS2 GAS-2 growth arrest specific 2 protein-coding 225.25-18 chr2 119769726 119770100 + 0.75 NA intron (NM_002830, intron 1 of 26) intron (NM_002830, intron 1 of 26) 9991 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 207.75-53 chr9 37696328 37696849 + 0.75 NA intron (NM_001371225, intron 2 of 15) intron (NM_001371225, intron 2 of 15) 28579 NM_001371223 271-2 chr1 186386266 186386851 + 0.75 NA intron (NM_001164245, intron 4 of 12) Zaphod2|DNA|hAT-Tip100 10720 NM_017847 54953 Hs.371210 NM_017847 ENSG00000157181 ODR4 C1orf27|TTG1|odr-4 odr-4 GPCR localization factor homolog protein-coding 276.75-8 chr3 19377618 19378082 + 0.75 NA intron (NM_144633, intron 5 of 15) intron (NM_144633, intron 5 of 15) -62919 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 149.5-89 chr7 128777867 128778123 + 0.75 NA Intergenic L1M4a1|LINE|L1 -2205 NM_001708 611 Hs.656404 NM_001708 ENSG00000128617 OPN1SW BCP|BOP|CBT opsin 1, short wave sensitive protein-coding 180.25-33 chr2 110164318 110164890 + 0.75 NA exon (NM_000272, exon 8 of 20) exon (NM_000272, exon 8 of 20) 40409 NM_001128179 4867 Hs.280388 NM_000272 ENSG00000144061 NPHP1 JBTS4|NPH1|SLSN1 nephrocystin 1 protein-coding 233.75-11 chr2 114744914 114745524 + 0.75 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 88329 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 217-14 chr2 117398072 117398505 + 0.75 NA Intergenic L1PA16|LINE|L1 -416403 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 251.5-15 chr2 167133779 167134358 + 0.75 NA intron (NR_046665, intron 1 of 1) intron (NR_046665, intron 1 of 1) 6887 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 171.75-35 chr17 58713426 58713699 + 0.75 NA intron (NM_058216, intron 5 of 8) AluSz|SINE|Alu 20960 NM_058216 5889 Hs.412587 NM_002876 ENSG00000108384 RAD51C BROVCA3|FANCO|R51H3|RAD51L2 RAD51 paralog C protein-coding 324.25-5 chr4 31002043 31002906 + 0.75 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -168670 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 150-75 chr5 169184423 169184759 + 0.75 NA intron (NM_003062, intron 4 of 35) MER5A|DNA|hAT-Charlie 79103 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 316.75-6 chr20 35673490 35674407 + 0.75 NA intron (NR_037570, intron 11 of 13) intron (NR_037570, intron 11 of 13) -9048 NR_037188 8904 Hs.246413 NM_003915 ENSG00000214078 CPNE1 COPN1|CPN1 copine 1 protein-coding 226-29 chr7 26892884 26893308 + 0.75 NA Intergenic L2|LINE|L2 -28506 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 154.5-53 chr20 43629855 43630150 + 0.75 NA intron (NM_001323578, intron 10 of 13) intron (NM_001323578, intron 10 of 13) -37017 NM_001278610 4605 Hs.179718 NM_002466 ENSG00000101057 MYBL2 B-MYB|BMYB MYB proto-oncogene like 2 protein-coding 207.25-26 chr17 61759663 61760122 + 0.75 NA intron (NM_032043, intron 14 of 19) Tigger1a_Art|DNA|TcMar-Tigger 103667 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 180.25-47 chr3 127902570 127902879 + 0.75 NA Intergenic Intergenic -12508 NM_207335 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 257-11 chr5 80125094 80125747 + 0.75 NA intron (NR_126061, intron 11 of 13) L2c|LINE|L2 -41755 NR_109930 101929215 NR_109930 ENSG00000249825 CTD-2201I18.1 - uncharacterized LOC101929215 ncRNA 179-34 chr20 45076891 45077247 + 0.75 NA 3' UTR (NM_006282, exon 11 of 11) 3' UTR (NM_006282, exon 11 of 11) 24058 NM_001322799 3787 Hs.117780 NM_002251 ENSG00000124134 KCNS1 Kv9.1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding 202-35 chr4 34965364 34965696 + 0.75 NA Intergenic Intergenic -695783 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 227.25-13 chr14 46345326 46345781 + 0.75 NA intron (NR_102702, intron 3 of 3) L1MCb|LINE|L1 -125806 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 151-49 chr20 16423543 16423813 + 0.75 NA intron (NM_001199866, intron 15 of 22) intron (NM_001199866, intron 15 of 22) 149770 NM_001199866 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 232.25-28 chr5 16248325 16249032 + 0.75 NA Intergenic Intergenic 68437 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 214.75-29 chr20 12642944 12643387 + 0.75 NA Intergenic Intergenic 293798 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 148.25-59 chr3 66989997 66990316 + 0.75 NA Intergenic Intergenic -8151 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 150.5-36 chr12 128206609 128207016 + 0.75 NA Intergenic Intergenic -60591 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 173-52 chr4 31734639 31734976 + 0.75 NA Intergenic Intergenic 228263 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 219.75-25 chr20 31303760 31304369 + 0.75 NA intron (NM_001037731, intron 1 of 1) intron (NM_001037731, intron 1 of 1) 4521 NM_001037731 245930 Hs.580703 NM_001037731 ENSG00000215545 DEFB116 DEFB-16 defensin beta 116 protein-coding 177-20 chr15 26428836 26429369 + 0.75 NA Intergenic L1MEh|LINE|L1 199988 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 180.5-30 chr18 54918906 54919211 + 0.75 NA intron (NM_001143829, intron 9 of 11) intron (NM_001143829, intron 9 of 11) 38990 NM_001143829 80323 Hs.120790 NM_025214 ENSG00000166510 CCDC68 SE57-1 coiled-coil domain containing 68 protein-coding 232 chr1 42367114 42367535 + 0.75 NA Intergenic AluSz|SINE|Alu -13468 NM_173642 284716 Hs.420244 NM_173642 ENSG00000177181 RIMKLA FAM80A|NAAGS|NAAGS-II ribosomal modification protein rimK like family member A protein-coding 147.75-59 chr2 222941789 222942035 + 0.75 NA 3' UTR (NM_203372, exon 16 of 16) 3' UTR (NM_203372, exon 16 of 16) 80876 NM_001354159 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 196-9 chr10 111305095 111305505 + 0.75 NA Intergenic Intergenic 191009 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 234-16 chr5 116732062 116732762 + 0.75 NA Intergenic MIRb|SINE|MIR 29797 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 185.75-27 chr17 32911834 32912255 + 0.75 NA Intergenic Intergenic -15866 NM_001033504 26022 Hs.3447 NM_015544 ENSG00000006042 TMEM98 TADA1 transmembrane protein 98 protein-coding 177.25-39 chr2 167695686 167696152 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR -122753 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 197-34 chr5 3368981 3369380 + 0.75 NA Intergenic L1MA6|LINE|L1 -83636 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 148.75-26 chr14 40041367 40041617 + 0.75 NA Intergenic AluSc|SINE|Alu -608992 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 204.5-22 chr3 20044700 20045115 + 0.75 NA intron (NM_003884, intron 1 of 17) intron (NM_003884, intron 1 of 17) 4461 NM_003884 8850 Hs.533055 NM_003884 ENSG00000114166 KAT2B CAF|P/CAF|PCAF lysine acetyltransferase 2B protein-coding 236-11 chr14 65018380 65018728 + 0.75 NA intron (NM_002028, intron 4 of 11) AluSx|SINE|Alu -26134 NR_039855 100616490 NR_039855 ENSG00000266531 MIR4706 mir-4706 microRNA 4706 ncRNA 195.5-15 chr14 63151696 63152043 + 0.75 NA Intergenic Tigger17a|DNA|TcMar-Tigger -52574 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 309.75-3 chr12 17042908 17043686 + 0.75 NA Intergenic L1MEg|LINE|L1 54550 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 163.25-63 chr5 141992468 141992873 + 0.75 NA Intergenic Intergenic 20357 NM_005471 10007 Hs.633853 NM_005471 ENSG00000113552 GNPDA1 GNP1|GNPDA|GNPI|GPI|HLN glucosamine-6-phosphate deaminase 1 protein-coding 198.75-38 chr4 26445521 26445975 + 0.75 NA Intergenic AluSp|SINE|Alu 44736 NM_000730 886 Hs.129 NM_000730 ENSG00000163394 CCKAR CCK-A|CCK1-R|CCK1R|CCKRA cholecystokinin A receptor protein-coding 280.5-10 chr5 107849157 107849793 + 0.75 NA Intergenic L1ME2|LINE|L1 -178538 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 180.75-38 chr21 22837618 22837916 + 0.75 NA Intergenic L1MA3|LINE|L1 -241517 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 189.5-22 chr16 76433845 76434194 + 0.75 NA intron (NR_136213, intron 4 of 23) (TA)n|Simple_repeat|Simple_repeat 124167 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 164.5-34 chr2 88022935 88023283 + 0.75 NA Intergenic Intergenic 32674 NM_016618 51315 Hs.469254 NM_016618 ENSG00000172086 KRCC1 CHBP2 lysine rich coiled-coil 1 protein-coding 230.25-10 chr12 43135724 43136348 + 0.75 NA Intergenic L1M4b|LINE|L1 -19279 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 224.75-24 chr3 107503866 107504382 + 0.75 NA Intergenic MamRep605|LTR?|LTR? -18838 NM_001276286 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 148.25-102 chr9 104602035 104602306 + 0.75 NA Intergenic MIRb|SINE|MIR -2757 NM_001004482 138799 Hs.553598 NM_001004482 ENSG00000277556 OR13C5 OR9-11 olfactory receptor family 13 subfamily C member 5 protein-coding 251.25-19 chr2 228381827 228382341 + 0.75 NA Intergenic L1MA7|LINE|L1 -200397 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 240.5-9 chr14 43109837 43110488 + 0.75 NA Intergenic Intergenic 1397121 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 251.5-7 chr12 30358398 30358943 + 0.75 NA Intergenic LTR41C|LTR|ERVL 318574 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 282.5-8 chr15 73559035 73559504 + 0.75 NA TTS (NM_001161363) TTS (NM_001161363) 10274 NR_103844 101241892 Hs.656678 NR_103844 ENSG00000281183 NPTN-IT1 lncRNA-LET NPTN intronic transcript 1 ncRNA 147.75-71 chr3 132874866 132875109 + 0.75 NA TTS (NR_002811) TTS (NR_002811) -152528 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 187.25-53 chr5 98554668 98555026 + 0.75 NA Intergenic Intergenic -213785 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 180.75-7 chr10 90109118 90109506 + 0.75 NA Intergenic Intergenic -151939 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 278.75-13 chr9 28108663 28109364 + 0.75 NA intron (NM_152570, intron 5 of 6) L1PA8|LINE|L1 -535147 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 154.75-58 chr20 58805186 58805604 + 0.75 NA Intergenic Intergenic 12299 NR_029844 407022 NR_029844 ENSG00000284040 MIR296 MIRN296|miRNA296|mir-296 microRNA 296 ncRNA 212.5-11 chr14 60102311 60102857 + 0.75 NA intron (NM_022495, intron 1 of 9) intron (NM_022495, intron 1 of 9) 10661 NM_001330177 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 177.25-61 chr5 68681153 68681469 + 0.75 NA Intergenic Intergenic 348616 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 182-37 chr3 112741179 112741492 + 0.75 NA intron (NR_110017, intron 2 of 4) intron (NR_110017, intron 2 of 4) 4246 NR_162092 113218483 NR_162092 MIR9900 - microRNA 9900 ncRNA 162.25-92 chr8 21475602 21476105 + 0.75 NA Intergenic L1MC2|LINE|L1 177614 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 183.5-51 chr4 54122631 54123054 + 0.75 NA Intergenic L1MEd|LINE|L1 22679 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 220.5-31 chr5 119348363 119348709 + 0.75 NA intron (NM_001286814, intron 1 of 1) L3|LINE|CR1 -6237 NM_001286813 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 184.5 chr1 8021638 8021955 + 0.75 NA intron (NM_018948, intron 1 of 3) MIR|SINE|MIR 4513 NM_018948 54206 Hs.605445 NM_018948 ENSG00000116285 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 207.25-29 chr18 57898587 57898954 + 0.75 NA Intergenic Intergenic -95455 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 164.5-81 chr6 98180543 98180899 + 0.75 NA Intergenic Intergenic 156190 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 180.5-22 chr15 40007287 40007760 + 0.75 NA intron (NM_001013703, intron 24 of 38) intron (NM_001013703, intron 24 of 38) 31658 NM_003134 6727 Hs.533732 NM_003134 ENSG00000140319 SRP14 ALURBP signal recognition particle 14 protein-coding 155.25-38 chr2 12444341 12444687 + 0.75 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 245384 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 201.5 chr1 161751748 161752102 + 0.75 NA exon (NM_007240, exon 3 of 6) exon (NM_007240, exon 3 of 6) 2139 NM_007240 11266 Hs.416216 NM_007240 ENSG00000081721 DUSP12 DUSP1|YVH1 dual specificity phosphatase 12 protein-coding 253.25-3 chr12 132604436 132604826 + 0.75 NA intron (NM_001195520, intron 3 of 5) intron (NM_001195520, intron 3 of 5) 5951 NM_001195520 100507055 Hs.282811 NM_001195520 ENSG00000204583 LRCOL1 - leucine rich colipase like 1 protein-coding 156.75-98 chr8 79206162 79206516 + 0.75 NA Intergenic Intergenic -125849 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 211-10 chr11 9419649 9420024 + 0.75 NA intron (NM_006391, intron 6 of 24) intron (NM_006391, intron 6 of 24) -8930 NR_002962 677808 Hs.689720 NR_002962 ENSG00000201998 SNORA23 ACA23 small nucleolar RNA, H/ACA box 23 snoRNA 195.75-36 chr2 66881614 66882028 + 0.75 NA Intergenic Intergenic -22615 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 222.75 chr1 22975020 22975537 + 0.75 NA Intergenic Intergenic -2412 NM_001289974 646262 NM_001289974 ENSG00000215906 LACTBL1 - lactamase beta like 1 protein-coding 220.75-16 chr2 22812003 22812399 + 0.75 NA Intergenic Intergenic 275722 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 194.5-37 chr20 13869456 13870033 + 0.75 NA intron (NR_073206, intron 14 of 20) (ATTAT)n|Simple_repeat|Simple_repeat 84716 NR_147982 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 151.75-91 chr6 79762199 79762515 + 0.75 NA Intergenic Intergenic 49889 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 151-107 chr8 132808535 132808891 + 0.75 NA intron (NM_198513, intron 7 of 7) intron (NM_198513, intron 7 of 7) 33325 NM_001277196 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 172.5-37 chr2 178296512 178296938 + 0.75 NA intron (NM_001201480, intron 2 of 25) intron (NM_001201480, intron 2 of 25) -23517 NM_145739 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 167-76 chr6 56597387 56597725 + 0.75 NA intron (NM_001144770, intron 39 of 94) intron (NM_001144770, intron 39 of 94) 45333 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 319.5-3 chr14 41669567 41670333 + 0.75 NA intron (NM_001346173, intron 1 of 4) intron (NM_001346173, intron 1 of 4) 63094 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 172.5-62 chr5 94515822 94516105 + 0.75 NA intron (NM_001145678, intron 5 of 20) intron (NM_001145678, intron 5 of 20) 102641 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 269.25-11 chr2 145923793 145924434 + 0.75 NA Intergenic Intergenic -662944 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 168.5-65 chr3 78876426 78876798 + 0.75 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 142847 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 257.25-3 chr1 174982652 174983188 + 0.75 NA intron (NM_001366454, intron 8 of 8) intron (NM_001366454, intron 8 of 8) -16515 NM_001007214 27101 Hs.508524 NM_014412 ENSG00000116161 CACYBP GIG5|PNAS-107|S100A6BP|SIP calcyclin binding protein protein-coding 198.25-5 chr11 56452066 56452585 + 0.75 NA Intergenic Intergenic 11076 NM_001004743 390162 Hs.553749 NM_001004743 ENSG00000150269 OR5M9 OR11-190 olfactory receptor family 5 subfamily M member 9 protein-coding 309.5 chr1 55916655 55917431 + 0.75 NA intron (NR_147162, intron 2 of 2) MIRb|SINE|MIR 27920 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 174.75-61 chr7 78737449 78737749 + 0.75 NA intron (NM_001301128, intron 2 of 20) Charlie1a|DNA|hAT-Charlie -271389 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 166.25-37 chr20 20097140 20097424 + 0.75 NA intron (NM_015585, intron 7 of 26) intron (NM_015585, intron 7 of 26) 40636 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 148.25-42 chr2 36078851 36079118 + 0.75 NA Intergenic Intergenic 276586 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 212.5-26 chr20 10936356 10936709 + 0.75 NA Intergenic Intergenic -27260 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 270.75-8 chr11 103548079 103548545 + 0.75 NA Intergenic Intergenic -301594 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 367.25-3 chr4 28681818 28682444 + 0.75 NA Intergenic Intergenic -137451 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 168.25-70 chr6 135352852 135353340 + 0.75 NA intron (NM_017651, intron 23 of 27) intron (NM_017651, intron 23 of 27) 113936 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 307.75-2 chr11 114580187 114580972 + 0.75 NA intron (NM_017678, intron 4 of 5) intron (NM_017678, intron 4 of 5) 15207 NM_017678 54827 Hs.179100 NM_017678 ENSG00000137634 NXPE4 C11orf33|FAM55D neurexophilin and PC-esterase domain family member 4 protein-coding 192.5-18 chr15 75530794 75531209 + 0.75 NA intron (NM_002833, intron 1 of 12) intron (NM_002833, intron 1 of 12) 48314 NM_002833 5780 Hs.445775 NM_002833 ENSG00000169410 PTPN9 MEG2|PTPMEG2 protein tyrosine phosphatase non-receptor type 9 protein-coding 168-10 chr10 8004612 8004941 + 0.75 NA intron (NM_031923, intron 4 of 6) L1MEd|LINE|L1 47715 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 163-74 chr7 16870229 16870503 + 0.75 NA intron (NM_176813, intron 3 of 7) L1M4|LINE|L1 11617 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 222.25-13 chr14 66343463 66343845 + 0.75 NA Intergenic (CTAT)n|Simple_repeat|Simple_repeat -142717 NR_110307 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 194-5 chr1 211683832 211684296 + 0.75 NA intron (NR_148994, intron 2 of 3) intron (NR_148994, intron 2 of 3) 8302 NR_148994 91548 Hs.367839 NR_148994 LOC91548 - uncharacterized LOC91548 ncRNA 145.75-77 chr3 99126244 99126568 + 0.75 NA Intergenic Intergenic -224711 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 211.75-8 chr12 131667910 131668261 + 0.75 NA Intergenic Intergenic -19964 NR_146868 105370085 Hs.739274 NR_146868 LINC02414 - long intergenic non-protein coding RNA 2414 ncRNA 184.75-49 chr22 25820879 25821217 + 0.75 NA intron (NM_001318245, intron 12 of 43) L1MA5A|LINE|L1 78860 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 155.5-27 chr12 129881291 129881614 + 0.75 NA intron (NM_133448, intron 1 of 8) L1ME1|LINE|L1 22573 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 178.5-29 chr15 46504340 46504596 + 0.75 NA Intergenic Intergenic -679621 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 239.25-19 chr4 15438684 15439321 + 0.75 NA intron (NM_001135171, intron 2 of 2) intron (NM_001135171, intron 2 of 2) 10969 NM_031911 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 169.5-31 chr14 59868507 59868872 + 0.75 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 2087 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 303-3 chr11 73070354 73070782 + 0.75 NA intron (NM_014824, intron 3 of 19) AluSx1|SINE|Alu 71750 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 178-69 chr8 86345784 86346201 + 0.75 NA intron (NM_007013, intron 1 of 24) intron (NM_007013, intron 1 of 24) 3445 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 195.75-5 chr10 20432985 20433386 + 0.75 NA Intergenic MER33|DNA|hAT-Charlie -118785 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 398.5-2 chr2 153812042 153812673 + 0.75 NA Intergenic Intergenic -59565 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 224.25-11 chr14 60721690 60722147 + 0.75 NA intron (NM_017420, intron 1 of 2) CpG 2433 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 207.25-13 chr12 14425135 14425483 + 0.75 NA exon (NM_018179, exon 2 of 15) exon (NM_018179, exon 2 of 15) 40028 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 217.5-8 chr11 34955030 34955391 + 0.75 NA intron (NM_001166158, intron 3 of 5) intron (NM_001166158, intron 3 of 5) 13373 NR_039836 100616437 NR_039836 ENSG00000251862 MIR1343 - microRNA 1343 ncRNA 221-13 chr17 51583362 51583857 + 0.75 NA Intergenic L2a|LINE|L2 148182 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 276.75-10 chr4 117581726 117582239 + 0.75 NA intron (NR_125757, intron 2 of 3) MLT1D|LTR|ERVL-MaLR 153584 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 171.5-59 chr3 81591489 81591917 + 0.75 NA intron (NM_000158, intron 8 of 15) HAL1b|LINE|L1 169942 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 166.5-3 chr1 215257857 215258267 + 0.75 NA Intergenic Intergenic 175325 NM_014217 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 184.75-24 chr14 31134189 31134443 + 0.75 NA intron (NM_015382, intron 22 of 42) intron (NM_015382, intron 22 of 42) 73477 NM_015382 25831 Hs.708017 NM_015382 ENSG00000092148 HECTD1 EULIR HECT domain E3 ubiquitin protein ligase 1 protein-coding 172-36 chr2 58974395 58974723 + 0.75 NA intron (NR_033873, intron 6 of 13) intron (NR_033873, intron 6 of 13) -243149 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 178.25-23 chr17 47154278 47154584 + 0.75 NA intron (NR_148340, intron 6 of 16) intron (NR_148340, intron 6 of 16) 34864 NM_001293089 996 Hs.463295 NM_001256 ENSG00000004897 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 262.25-10 chr4 58111207 58111846 + 0.75 NA Intergenic L1MB3|LINE|L1 424802 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 161.75-24 chr17 63225438 63225855 + 0.75 NA intron (NM_025185, intron 6 of 25) L2|LINE|L2 214621 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 165.25-66 chr8 81235032 81235313 + 0.75 NA Intergenic Intergenic -45364 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 354.75-6 chr3 181919701 181920642 + 0.75 NA Intergenic Intergenic -32193 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 188.75-9 chr10 68763069 68763439 + 0.75 NA intron (NR_104262, intron 15 of 23) AluSc|SINE|Alu 8082 NR_003076 692211 NR_003076 ENSG00000283551 SNORD98 HBII-419 small nucleolar RNA, C/D box 98 snoRNA 280-6 chr2 123060443 123061017 + 0.75 NA Intergenic Tigger6a|DNA|TcMar-Tigger 12751 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 221.25-20 chr21 30093990 30094714 + 0.75 NA Intergenic Intergenic 72453 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 288.75-7 chr12 93141795 93142234 + 0.75 NA intron (NR_040096, intron 3 of 4) L1M5|LINE|L1 -32352 NR_120492 102724933 Hs.663947 NR_120492 ENSG00000258171 LINC02412 - long intergenic non-protein coding RNA 2412 ncRNA 175-55 chr8 130929876 130930226 + 0.75 NA intron (NM_001115, intron 5 of 17) L1MA8|LINE|L1 110858 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 194.75-17 chr18 2128452 2128850 + 0.75 NA Intergenic Intergenic 442854 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 198.25-23 chr2 125424699 125425051 + 0.75 NA Intergenic Intergenic 693110 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 152-44 chr2 183384230 183384649 + 0.75 NA Intergenic Intergenic 259996 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 156-7 chr1 223443750 223444125 + 0.75 NA Intergenic Intergenic 50522 NM_152610 164127 Hs.192090 NM_152610 ENSG00000178395 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 375.25-2 chr7 71761030 71761532 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -453511 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 202-56 chrX 66316308 66316772 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger 148790 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 202.5-50 chr5 79612437 79612852 + 0.75 NA 5' UTR (NM_173797, exon 1 of 16) 5' UTR (NM_173797, exon 1 of 16) 203 NM_001349554 167153 Hs.418198 NM_173797 ENSG00000164329 TENT2 APD4|GLD2|PAPD4|TUT2 terminal nucleotidyltransferase 2 protein-coding 188-31 chr2 85653630 85654083 + 0.75 NA Intergenic AluSp|SINE|Alu 14343 NM_000542 6439 Hs.512690 NM_000542 ENSG00000168878 SFTPB PSP-B|SFTB3|SFTP3|SMDP1|SP-B surfactant protein B protein-coding 240.25-13 chr20 41850802 41851362 + 0.75 NA Intergenic L1MA8|LINE|L1 -232705 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 244.75-16 chr3 67084785 67085254 + 0.75 NA Intergenic L1MA3|LINE|L1 86712 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 427.75 chr4 61126374 61127117 + 0.75 NA Intergenic L1MB7|LINE|L1 -16911 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 190-24 chr2 58397484 58397876 + 0.75 NA Intergenic Intergenic 121803 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 218.25-8 chr11 59313601 59314126 + 0.75 NA Intergenic MIR|SINE|MIR -50596 NM_001004729 390195 Hs.553755 NM_001004729 ENSG00000176495 OR5AN1 OR11-244 olfactory receptor family 5 subfamily AN member 1 protein-coding 168.25-54 chr4 115695939 115696327 + 0.75 NA Intergenic Intergenic -582513 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 258.25-15 chr3 115359872 115360335 + 0.75 NA Intergenic L1M4a1|LINE|L1 -212815 NM_001348800 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 298.75-8 chr6 131408850 131409519 + 0.75 NA Intergenic Intergenic 158780 NM_004842 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 233.75-22 chr4 85818067 85818551 + 0.75 NA intron (NM_001346093, intron 1 of 6) intron (NM_001346093, intron 1 of 6) -9628 NM_001287805 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 217.75-15 chr16 61002015 61002701 + 0.75 NA Intergenic L3|LINE|CR1 53408 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 297.75 chr10 44881205 44881846 + 0.75 NA intron (NR_033842, intron 2 of 7) intron (NR_033842, intron 2 of 7) -29791 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 147.25-79 chr5 164265599 164265847 + 0.75 NA Intergenic MER57C2|LTR|ERV1 201679 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 265.75-12 chr4 35483415 35483844 + 0.75 NA Intergenic Intergenic 760310 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 150.5-14 chr1 211484642 211484957 + 0.75 NA intron (NM_183059, intron 1 of 2) MER115|DNA|hAT-Tip100 8118 NM_183059 343035 Hs.632495 NM_183059 ENSG00000198570 RD3 C1orf36|LCA12 retinal degeneration 3, GUCY2D regulator protein-coding 189.75-71 chr7 89131459 89132003 + 0.75 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -335994 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 202-30 chr22 26856316 26856621 + 0.75 NA Intergenic Intergenic -3743 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 232.25-11 chr12 30944528 30944864 + 0.75 NA intron (NM_001370301, intron 1 of 6) L1MA8|LINE|L1 17792 NM_001080509 441631 Hs.505141 NM_001080509 ENSG00000110900 TSPAN11 VSSW1971 tetraspanin 11 protein-coding 185.75-72 chr6 129366687 129367165 + 0.75 NA intron (NM_000426, intron 33 of 64) intron (NM_000426, intron 33 of 64) 343251 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 173-9 chr1 177737265 177737565 + 0.75 NA Intergenic Intergenic 36891 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 207-42 chr5 147642773 147643345 + 0.75 NA intron (NM_001282282, intron 6 of 20) MLT2A2|LTR|ERVL 83065 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 189.5-35 chr2 138403295 138403626 + 0.75 NA Intergenic L1MC1|LINE|L1 -98310 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 254-9 chr4 142052518 142052915 + 0.75 NA intron (NM_001331040, intron 25 of 25) intron (NM_001331040, intron 25 of 25) 416133 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 208.75-10 chr15 27599108 27599471 + 0.75 NA Intergenic Intergenic -437970 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 218.25-10 chr12 46456960 46457358 + 0.75 NA intron (NR_125378, intron 3 of 3) intron (NR_125378, intron 3 of 3) 73052 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 212.75-31 chr6 50445587 50445903 + 0.75 NA Intergenic Intergenic -267799 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 145.75-11 chr10 44742309 44742741 + 0.75 NA Intergenic L1M6|LINE|L1 -168791 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 201.25-8 chr12 101541696 101542067 + 0.75 NA Intergenic Intergenic -53050 NM_206819 4604 Hs.654589 NM_002465 ENSG00000196091 MYBPC1 LCCS4|MYBPCC|MYBPCS myosin binding protein C, slow type protein-coding 300-3 chr15 26800359 26800892 + 0.75 NA Intergenic Intergenic -26862 NM_021912 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 156.5-90 chr5 119356615 119357009 + 0.75 NA intron (NM_014350, intron 1 of 1) intron (NM_014350, intron 1 of 1) 793 NM_014350 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 169.25-23 chr18 9727801 9728220 + 0.75 NA intron (NM_006868, intron 1 of 6) intron (NM_006868, intron 1 of 6) 19709 NM_006868 11031 Hs.99528 NM_006868 ENSG00000168461 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 219.25-41 chr7 7539907 7540466 + 0.75 NA Intergenic Intergenic -4313 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 191.5-47 chr5 46354512 46355030 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -658391 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 303.75-13 chr9 92465741 92466504 + 0.75 NA intron (NM_017680, intron 5 of 8) AluSx1|SINE|Alu 16384 NM_017680 54829 Hs.435655 NM_017680 ENSG00000106819 ASPN OS3|PLAP-1|PLAP1|SLRR1C asporin protein-coding 235-16 chr3 179881318 179881827 + 0.75 NA intron (NM_001349401, intron 1 of 11) MIRb|SINE|MIR -16622 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 232.75-12 chr2 10554577 10554998 + 0.75 NA Intergenic AluSp|SINE|Alu 105059 NR_110597 101929715 Hs.634550 NR_110597 ODC1-DT lncRNA-MIF ODC1 divergent transcript ncRNA 179.25-11 chr10 59000928 59001377 + 0.75 NA intron (NR_108046, intron 1 of 1) intron (NR_108046, intron 1 of 1) 1634 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 181.5-74 chr9 96182435 96182954 + 0.75 NA Intergenic MIRc|SINE|MIR -63769 NR_146524 105376162 Hs.662614 NR_146524 ENSG00000232283 HSD17B3-AS1 - HSD17B3 antisense RNA 1 ncRNA 265.5-3 chr10 72610083 72610597 + 0.75 NA intron (NM_006077, intron 1 of 11) intron (NM_006077, intron 1 of 11) 15739 NM_001195518 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 161.5-44 chr19 31465915 31466186 + 0.75 NA Intergenic Intergenic -116614 NR_138035 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 174.5-6 chr1 101634314 101634579 + 0.75 NA Intergenic Intergenic 212634 NM_001288821 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 239-11 chr2 182253608 182253938 + 0.75 NA intron (NM_005019, intron 2 of 14) MLT1L|LTR|ERVL-MaLR -11710 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 146.75-4 chr1 69751386 69751704 + 0.75 NA intron (NM_001366839, intron 3 of 25) intron (NM_001366839, intron 3 of 25) -167777 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 212.75-14 chr2 29718215 29718525 + 0.75 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 203216 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 211-35 chr7 93596874 93597365 + 0.75 NA Intergenic Intergenic -22389 NM_001164737 799 Hs.489127 NM_001742 ENSG00000004948 CALCR CRT|CT-R|CTR|CTR1 calcitonin receptor protein-coding 161.5-72 chr4 133181763 133182031 + 0.75 NA intron (NM_032961, intron 4 of 4) intron (NM_032961, intron 4 of 4) 32603 NM_020815 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 237-9 chr3 140689603 140690139 + 0.75 NA intron (NM_152616, intron 3 of 4) intron (NM_152616, intron 3 of 4) 11807 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 153.75-53 chr4 5792662 5793014 + 0.75 NA intron (NM_001306090, intron 12 of 20) L1MEd|LINE|L1 81637 NM_001306090 2121 Hs.646899 NM_014556 ENSG00000072840 EVC DWF-1|EVC1|EVCL EvC ciliary complex subunit 1 protein-coding 190.75 chr1 34190555 34190997 + 0.75 NA intron (NM_001134734, intron 1 of 6) MIR|SINE|MIR 13869 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 254 chr12 105951413 105951900 + 0.75 NA Intergenic Intergenic 188377 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 495.75 chr20 18282685 18283614 + 0.75 NA Intergenic Intergenic -5079 NM_001283003 7692 Hs.472221 NM_003434 ENSG00000125846 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 221.5-17 chr14 58004983 58005370 + 0.75 NA exon (NM_001001872, exon 7 of 8) exon (NM_001001872, exon 7 of 8) -139084 NM_001306087 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 177.5-45 chr5 25596395 25596848 + 0.75 NA Intergenic THE1D|LTR|ERVL-MaLR 405668 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 156.75-32 chr13 84546217 84546651 + 0.75 NA intron (NR_046871, intron 3 of 6) L1MA7|LINE|L1 -237220 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 234.25-14 chr3 100888711 100889363 + 0.75 NA intron (NM_001349332, intron 4 of 35) intron (NM_001349332, intron 4 of 35) 104453 NM_001349331 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 160.5-46 chr19 45946236 45946631 + 0.75 NA intron (NM_002516, intron 3 of 3) L1MC4|LINE|L1 27432 NM_002516 4858 Hs.375439 NM_002516 ENSG00000104967 NOVA2 ANOVA|NOVA3 NOVA alternative splicing regulator 2 protein-coding 316 chr1 237181773 237182491 + 0.75 NA intron (NM_001035, intron 1 of 104) AluSg|SINE|Alu 139948 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 215-18 chr21 29907022 29907486 + 0.75 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 32742 NM_001330994 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 183.25-57 chr5 5457924 5458290 + 0.75 NA intron (NM_015325, intron 12 of 18) intron (NM_015325, intron 12 of 18) 35430 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 286-6 chr6 71176081 71176646 + 0.75 NA Intergenic MIRc|SINE|MIR -112448 NM_024576 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 275 chr10 74548785 74549425 + 0.75 NA intron (NM_001369123, intron 7 of 9) intron (NM_001369123, intron 7 of 9) -19781 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 236.75-14 chr20 40302872 40303231 + 0.75 NA Intergenic Intergenic 298590 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 247.75-17 chr2 195157865 195158591 + 0.75 NA Intergenic L1ME3A|LINE|L1 427633 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 151.5-31 chr15 69458603 69458901 + 0.75 NA Intergenic AluSg|SINE|Alu 5934 NM_001003 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 228.5-30 chr2 57632598 57633034 + 0.75 NA Intergenic L1ME3A|LINE|L1 -274835 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 235.25-11 chr2 39895417 39895829 + 0.75 NA Intergenic MIR|SINE|MIR -22011 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 280.75-11 chr3 2996188 2996577 + 0.75 NA intron (NM_175607, intron 14 of 24) intron (NM_175607, intron 14 of 24) 64763 NR_046554 100873975 Hs.581502 NR_046554 CNTN4-AS1 - CNTN4 antisense RNA 1 ncRNA 172-57 chr4 30803349 30803752 + 0.75 NA intron (NM_032457, intron 1 of 2) AluJr|SINE|Alu 83181 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 229.25-26 chrX 23717828 23718431 + 0.75 NA intron (NM_001037171, intron 8 of 15) MIRb|SINE|MIR 25147 NM_001037171 23597 Hs.298885 NM_001033583 ENSG00000123130 ACOT9 ACATE2|CGI-16|MT-ACT48|MTACT48 acyl-CoA thioesterase 9 protein-coding 175.5-73 chr4 95044102 95044534 + 0.75 NA intron (NM_001256792, intron 1 of 10) intron (NM_001256792, intron 1 of 10) -7359 NM_001256793 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 152.5-15 chr12 8983161 8983512 + 0.75 NA intron (NR_137427, intron 1 of 2) L1MEf|LINE|L1 -6210 NM_001329099 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 328.25-7 chrX 44730505 44731223 + 0.75 NA Intergenic L1MB8|LINE|L1 -113157 NM_022076 63904 Hs.534478 NM_022076 ENSG00000189037 DUSP21 LMWDSP21 dual specificity phosphatase 21 protein-coding 146.75-5 chr1 78888894 78889280 + 0.75 NA TTS (NM_022159) TTS (NM_022159) 117643 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 198-14 chr2 42130205 42130640 + 0.75 NA Intergenic Intergenic -38931 NM_001145076 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 EMAP like 4 protein-coding 312.5-3 chr2 8169642 8170129 + 0.75 NA intron (NR_034135, intron 7 of 8) MER2|DNA|TcMar-Tigger 158534 NR_034135 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 148.25-34 chr16 5612405 5612799 + 0.75 NA intron (NR_110902, intron 1 of 2) L2b|LINE|L2 3648 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 154.25-10 chr10 55664925 55665313 + 0.75 NA Intergenic AluSz|SINE|Alu -37177 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 159.25-76 chr8 74077005 74077276 + 0.75 NA Intergenic MER21C|LTR|ERVL 85748 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 176-53 chr4 178657325 178657718 + 0.75 NA Intergenic Intergenic -749585 NR_108093 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 278-4 chr2 55566588 55567147 + 0.75 NA intron (NM_020463, intron 11 of 14) AluJr|SINE|Alu 47272 NM_080667 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 161-32 chr14 83793776 83794046 + 0.75 NA Intergenic MER67B|LTR|ERV1 1151279 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 155.75-106 chr8 126208868 126209250 + 0.75 NA Intergenic L1PA15|LINE|L1 -116436 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 264.25-15 chr3 182812423 182813066 + 0.75 NA intron (NM_014616, intron 1 of 29) L1MB3|LINE|L1 19240 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 193-19 chr14 38776112 38776403 + 0.75 NA intron (NR_039982, intron 4 of 4) intron (NR_039982, intron 4 of 4) -106339 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 168.25-23 chr15 25964808 25965112 + 0.75 NA intron (NR_040082, intron 1 of 4) intron (NR_040082, intron 1 of 4) 62600 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LINC02346 - long intergenic non-protein coding RNA 2346 ncRNA 172.25-35 chr2 227126160 227126500 + 0.75 NA intron (NM_000092, intron 4 of 47) intron (NM_000092, intron 4 of 47) 38229 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 167.75-18 chr12 71676581 71676814 + 0.75 NA exon (NM_031435, exon 3 of 3) exon (NM_031435, exon 3 of 3) -9385 NM_018279 55266 Hs.644802 NM_018279 ENSG00000139291 TMEM19 - transmembrane protein 19 protein-coding 231.25-4 chr10 51248860 51249450 + 0.75 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -50418 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 147.75-81 chr4 130839503 130839819 + 0.75 NA Intergenic L1MA4|LINE|L1 463300 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 207.75-36 chr4 96931238 96931724 + 0.75 NA Intergenic Intergenic -435445 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 287.5-3 chr11 78114925 78115510 + 0.75 NA intron (NM_001007027, intron 5 of 13) AluSx|SINE|Alu 24409 NM_024079 79053 Hs.503368 NM_024079 ENSG00000159063 ALG8 CDG1H|PCLD3 ALG8 alpha-1,3-glucosyltransferase protein-coding 252.5-8 chr18 35712371 35712847 + 0.75 NA TTS (NM_020474) TTS (NM_020474) 58040 NM_020474 2589 Hs.514806 NM_020474 ENSG00000141429 GALNT1 GALNAC-T1 polypeptide N-acetylgalactosaminyltransferase 1 protein-coding 180.75-62 chr7 51792029 51792342 + 0.75 NA Intergenic L1MC2|LINE|L1 -398929 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 269.5-15 chr5 15240703 15241182 + 0.75 NA intron (NR_109944, intron 2 of 2) MSTA-int|LTR|ERVL-MaLR 25618 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 146.25-39 chr18 22292612 22292840 + 0.75 NA Intergenic MER2|DNA|TcMar-Tigger 123289 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 213.5-2 chr1 9657460 9657913 + 0.75 NA intron (NM_005026, intron 1 of 23) intron (NM_005026, intron 1 of 23) -3100 NR_027045 644997 Hs.568595 NM_001045478 ENSG00000179840 PIK3CD-AS1 C1orf200 PIK3CD antisense RNA 1 ncRNA 164-81 chr8 33740203 33740427 + 0.75 NA Intergenic MSTB|LTR|ERVL-MaLR -140209 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 214-34 chr7 47242433 47242810 + 0.75 NA Intergenic Intergenic 222182 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 159.5-95 chr8 82620114 82620429 + 0.75 NA Intergenic Intergenic -291833 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 210.5-46 chr8 62588238 62588763 + 0.75 NA intron (NM_001304533, intron 2 of 6) intron (NM_001304533, intron 2 of 6) 339646 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 247.25-17 chr5 62368101 62368701 + 0.75 NA intron (NM_001243952, intron 17 of 20) intron (NM_001243952, intron 17 of 20) 35504 NM_001348076 27292 Hs.731665 NM_014473 ENSG00000086189 DIMT1 DIM1|DIMT1L|HSA9761|HUSSY5 DIMT1 rRNA methyltransferase and ribosome maturation factor protein-coding 160.75-51 chr18 48647229 48647517 + 0.75 NA intron (NM_014772, intron 3 of 11) L1MD1|LINE|L1 -23227 NR_039897 100616366 NR_039897 ENSG00000266276 MIR4743 - microRNA 4743 ncRNA 189.5-66 chr7 104438908 104439341 + 0.75 NA intron (NM_199000, intron 1 of 2) L1MC|LINE|L1 110468 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 219.75-22 chr2 119976671 119977191 + 0.75 NA intron (NM_002830, intron 26 of 26) intron (NM_002830, intron 26 of 26) -36146 NR_135920 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 178-61 chr7 47572050 47572537 + 0.75 NA intron (NM_022748, intron 1 of 30) intron (NM_022748, intron 1 of 30) 9818 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 177.75-50 chr3 144156755 144157017 + 0.75 NA Intergenic Intergenic 183805 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 292.5-5 chr3 17061953 17062574 + 0.75 NA intron (NM_015184, intron 4 of 5) intron (NM_015184, intron 4 of 5) 129067 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 198-7 chr13 89822712 89823029 + 0.75 NA Intergenic Intergenic -258457 NR_046991 100874139 Hs.742173 NR_046991 LINC00353 - long intergenic non-protein coding RNA 353 ncRNA 175.75-59 chr5 149001490 149001774 + 0.75 NA 3' UTR (NM_024577, exon 17 of 17) 3' UTR (NM_024577, exon 17 of 17) 60777 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 178.75-20 chr16 49331584 49331879 + 0.75 NA Intergenic Intergenic -42073 NM_144602 123970 Hs.125875 NM_144602 ENSG00000166152 C16orf78 - chromosome 16 open reading frame 78 protein-coding 258.5-8 chr14 50144621 50145358 + 0.75 NA intron (NM_006939, intron 16 of 22) intron (NM_006939, intron 16 of 22) -28417 NR_049739 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 298.75-6 chr2 183128571 183129197 + 0.75 NA intron (NM_138285, intron 2 of 8) intron (NM_138285, intron 2 of 8) 4441 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 173-61 chr5 20051614 20052014 + 0.75 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -63614 NM_001349561 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 285.5-18 chr8 131296591 131297288 + 0.75 NA Intergenic L1MB4|LINE|L1 -256030 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 239 chr1 237756929 237757489 + 0.75 NA intron (NM_001035, intron 81 of 104) intron (NM_001035, intron 81 of 104) -104966 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 182.5-53 chr5 5252801 5253117 + 0.75 NA intron (NM_139056, intron 17 of 22) intron (NM_139056, intron 17 of 22) 112629 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 178.25-61 chr5 172897870 172898178 + 0.75 NA intron (NM_001031711, intron 3 of 9) intron (NM_001031711, intron 3 of 9) -17059 NR_162113 113218510 NR_162113 MIR10523 - microRNA 10523 ncRNA 302.25-5 chr12 23319522 23320231 + 0.75 NA Intergenic L1MB8|LINE|L1 144240 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 251.25-27 chr6 53817193 53817608 + 0.75 NA intron (NM_018214, intron 1 of 13) L1MA7|LINE|L1 22395 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 150-81 chr7 71876985 71877223 + 0.75 NA intron (NM_001363460, intron 4 of 5) L1MC|LINE|L1 460287 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 364.25 chr12 10380478 10381243 + 0.75 NA intron (NR_120430, intron 3 of 3) L1M2|LINE|L1 9181 NM_007360 22914 Hs.387787 NM_007360 ENSG00000213809 KLRK1 CD314|D12S2489E|KLR|NKG2-D|NKG2D killer cell lectin like receptor K1 protein-coding 253.75-27 chr8 144145010 144145495 + 0.75 NA Intergenic AluJr|SINE|Alu -2764 NM_001099280 727957 Hs.443139 NM_032450 ENSG00000179832 MROH1 HEATR7A maestro heat like repeat family member 1 protein-coding 157.5-18 chr12 62045520 62045865 + 0.75 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 147147 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 155.75-72 chr3 191287493 191287917 + 0.75 NA intron (NM_198152, intron 4 of 8) L1M1|LINE|L1 -41689 NM_174908 152137 Hs.478682 NM_174908 ENSG00000152492 CCDC50 C3orf6|DFNA44|YMER coiled-coil domain containing 50 protein-coding 156.25-93 chr8 85138253 85138544 + 0.75 NA exon (NM_001349638, exon 15 of 17) exon (NM_001349638, exon 15 of 17) 31160 NM_001349638 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 215 chr1 26313491 26313965 + 0.75 NA intron (NM_145345, intron 1 of 14) L1MEg|LINE|L1 -4230 NM_001803 1043 Hs.276770 NM_001803 ENSG00000169442 CD52 CDW52|EDDM5|HE5 CD52 molecule protein-coding 167.25-32 chr19 14336486 14336775 + 0.75 NA intron (NR_134916, intron 1 of 1) AluJb|SINE|Alu 2887 NR_134916 101928845 Hs.531617 NR_134916 ENSG00000267147 LINC01842 - long intergenic non-protein coding RNA 1842 ncRNA 187.75-15 chr11 74939755 74940117 + 0.75 NA intron (NM_001270381, intron 1 of 15) intron (NM_001270381, intron 1 of 15) 9155 NM_182969 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 155.25-68 chr4 71141739 71142147 + 0.75 NA Intergenic Intergenic -45316 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 145.75-91 chr5 2794702 2794943 + 0.75 NA Intergenic L1MC5a|LINE|L1 42691 NM_001306150 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 260-10 chr5 112853104 112853482 + 0.75 NA Intergenic LTR88b|LTR|Gypsy? -7895 NM_001204194 6728 Hs.637001 NM_003135 ENSG00000153037 SRP19 - signal recognition particle 19 protein-coding 224-28 chr5 58918405 58918724 + 0.75 NA Intergenic Intergenic 81334 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 281.25-19 chr9 75266334 75267039 + 0.75 NA Intergenic AluSq2|SINE|Alu 178172 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 146-6 chr1 190775244 190775600 + 0.75 NA intron (NR_033922, intron 2 of 4) intron (NR_033922, intron 2 of 4) 150532 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 171.5-41 chr2 34995659 34995943 + 0.75 NA Intergenic Intergenic 318244 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 195.5-6 chr10 52477860 52478177 + 0.75 NA Intergenic MLT1I|LTR|ERVL-MaLR -7485 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 163-64 chr5 24951735 24952148 + 0.75 NA Intergenic A-rich|Low_complexity|Low_complexity -111358 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 188.75-51 chr5 44678896 44679386 + 0.75 NA Intergenic L1P4e|LINE|L1 129652 NR_109864 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 241-10 chr14 39729111 39729614 + 0.75 NA Intergenic L1PB1|LINE|L1 -296862 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 231.25-16 chr14 81001647 81002042 + 0.75 NA intron (NM_001142626, intron 1 of 8) intron (NM_001142626, intron 1 of 8) 46223 NM_001018036 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 241.25-25 chr8 90976495 90976920 + 0.75 NA intron (NM_001363275, intron 3 of 5) L1ME3Cz|LINE|L1 8370 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 193.75-45 chr4 33067836 33068330 + 0.75 NA Intergenic Intergenic 717045 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 189.75-53 chr3 191438854 191439226 + 0.75 NA intron (NR_120606, intron 1 of 6) intron (NR_120606, intron 1 of 6) 13516 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 238.75-28 chr5 140796994 140797409 + 0.75 NA exon (NM_018905, exon 1 of 4) exon (NM_018905, exon 1 of 4) 2349 NM_018905 56146 Hs.199343 NM_018905 ENSG00000204969 PCDHA2 PCDH-ALPHA2 protocadherin alpha 2 protein-coding 150.75-72 chr5 23536132 23536412 + 0.75 NA Intergenic Intergenic 28617 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 278.5-4 chr17 30433535 30433965 + 0.75 NA intron (NM_001304, intron 8 of 20) intron (NM_001304, intron 8 of 20) -43658 NM_001007024 9527 Hs.462680 NM_004871 ENSG00000108587 GOSR1 GOLIM2|GOS-28|GOS28|GOS28/P28|GS28|P28 golgi SNAP receptor complex member 1 protein-coding 221.5-43 chr5 87419693 87420255 + 0.75 NA Intergenic ERVL-B4-int|LTR|ERVL -6941 NM_001363539 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 213.75-7 chr14 50422860 50423331 + 0.75 NA intron (NM_198794, intron 31 of 31) intron (NM_198794, intron 31 of 31) -25797 NM_001367064 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 151.75-11 chr1 246420257 246420675 + 0.75 NA intron (NM_001167740, intron 1 of 11) intron (NM_001167740, intron 1 of 11) -3054 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 319.25-8 chr8 52878717 52879333 + 0.75 NA Intergenic Intergenic -60883 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 174.25-50 chr4 86401296 86401573 + 0.75 NA intron (NM_002753, intron 1 of 13) intron (NM_002753, intron 1 of 13) -30567 NM_001318068 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 218.25-12 chr13 69621006 69621404 + 0.75 NA Intergenic MER41B|LTR|ERV1 398859 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 240-8 chr14 26889325 26889823 + 0.75 NA intron (NR_110041, intron 3 of 3) L1MB3|LINE|L1 16441 NR_110041 101927081 Hs.97955 NR_110041 ENSG00000257612 MIR4307HG - MIR4307 host gene ncRNA 154.75-18 chr12 61436415 61436697 + 0.75 NA Intergenic A-rich|Low_complexity|Low_complexity 756283 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 183-6 chr10 54084979 54085339 + 0.75 NA intron (NM_001142765, intron 14 of 31) intron (NM_001142765, intron 14 of 31) -401071 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 238.75-24 chr4 97551334 97551953 + 0.75 NA Intergenic MIR3|SINE|MIR 184717 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 326-4 chr7 3617936 3618469 + 0.75 NA intron (NM_152744, intron 1 of 44) L1ME3A|LINE|L1 316950 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 270.25-3 chr10 127444667 127445099 + 0.75 NA intron (NM_001290223, intron 50 of 51) MLT1C|LTR|ERVL-MaLR -104466 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 187.25-24 chr15 37569494 37569898 + 0.75 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -364911 NM_152453 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 202.25-21 chr14 82571635 82571919 + 0.75 NA Intergenic Intergenic -70855 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 236-38 chrX 56555169 56555608 + 0.75 NA Intergenic MER57A1|LTR|ERV1 -8205 NM_013444 29978 Hs.179309 NM_013444 ENSG00000188021 UBQLN2 ALS15|CHAP1|DSK2|HRIHFB2157|N4BP4|PLIC2 ubiquilin 2 protein-coding 267.5-25 chr8 16616356 16616733 + 0.75 NA Intergenic LTR80A|LTR|ERVL 385801 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 150.5-74 chr3 68691783 68692013 + 0.75 NA Intergenic L1MEd|LINE|L1 191261 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 223.25-39 chr9 22233595 22234110 + 0.75 NA Intergenic L1PA11|LINE|L1 -212972 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 227.5-35 chr8 129871891 129872457 + 0.75 NA intron (NM_001353287, intron 6 of 14) intron (NM_001353287, intron 6 of 14) 67637 NM_001353295 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 253.25-8 chr16 88927066 88927649 + 0.75 NA intron (NM_005187, intron 1 of 11) intron (NM_005187, intron 1 of 11) -12680 NM_001290330 100129697 Hs.689377 NM_001290330 LOC100129697 - uncharacterized LOC100129697 protein-coding 205.25-15 chr17 62174178 62174576 + 0.75 NA Intergenic L1ME4c|LINE|L1 101278 NR_027486 440452 Hs.448884 NR_027486 ENSG00000188755 TBC1D3P2 - TBC1 domain family member 3 pseudogene 2 pseudo 222.5-25 chr2 171299764 171300215 + 0.75 NA Intergenic L1ME4c|LINE|L1 -68696 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 198.75-37 chr3 178771654 178772231 + 0.75 NA intron (NR_126560, intron 2 of 7) intron (NR_126560, intron 2 of 7) 88463 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 225.25-34 chr7 3232923 3233318 + 0.75 NA Intergenic Intergenic -68132 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 151.25-11 chr10 112686596 112686868 + 0.75 NA intron (NM_001365713, intron 8 of 8) intron (NM_001365713, intron 8 of 8) 52562 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 246-11 chr6 115637880 115638483 + 0.75 NA intron (NR_134602, intron 1 of 3) intron (NR_134602, intron 1 of 3) 5654 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 184.75-60 chr4 126978100 126978462 + 0.75 NA Intergenic Intergenic -654676 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 173.5-7 chr1 181126016 181126510 + 0.75 NA Intergenic L2a|LINE|L2 37563 NM_016545 51278 Hs.15725 NM_016545 ENSG00000162783 IER5 SBBI48 immediate early response 5 protein-coding 203.75-31 chr4 93078656 93079165 + 0.75 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) -749843 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 188.25-10 chr12 9085249 9085578 + 0.75 NA intron (NM_000014, intron 22 of 35) L1MA7|LINE|L1 20236 NR_137424 144571 Hs.592432 NR_026971 ENSG00000245105 A2M-AS1 - A2M antisense RNA 1 ncRNA 193.5-48 chr4 31714902 31715307 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 208560 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 176.25-55 chr6 153175447 153175894 + 0.75 NA Intergenic Intergenic -44388 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 195-42 chr7 45086210 45086599 + 0.75 NA intron (NM_001146334, intron 1 of 7) intron (NM_001146334, intron 1 of 7) 2565 NM_001146334 23148 Hs.96633 NM_001146334 ENSG00000136274 NACAD - NAC alpha domain containing protein-coding 247-13 chr2 98286158 98286707 + 0.75 NA intron (NM_001345864, intron 16 of 21) L1MB7|LINE|L1 -59723 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 187.5-57 chr5 129626402 129626962 + 0.75 NA intron (NM_133638, intron 10 of 22) L2a|LINE|L2 -121412 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 181-47 chr7 158570062 158570351 + 0.75 NA intron (NM_130843, intron 1 of 21) CpG 17617 NM_002847 5799 Hs.490789 NM_002847 ENSG00000155093 PTPRN2 IA-2beta|IAR|ICAAR|PTPRP|R-PTP-N2 protein tyrosine phosphatase receptor type N2 protein-coding 185-57 chr4 164718859 164719232 + 0.75 NA Intergenic Intergenic -35086 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 173.25-82 chrX 121197806 121198105 + 0.75 NA Intergenic LTR25|LTR|ERV1 150345 NM_012084 2747 Hs.368538 NM_012084 ENSG00000182890 GLUD2 GDH2|GLUDP1 glutamate dehydrogenase 2 protein-coding 152-75 chr5 101002652 101002900 + 0.75 NA Intergenic L1M1|LINE|L1 -99494 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 251.25-30 chr8 119652868 119653265 + 0.75 NA intron (NM_001330600, intron 1 of 25) L3|LINE|CR1 -14227 NM_001130863 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 145.75-22 chr12 46988878 46989116 + 0.75 NA Intergenic Intergenic -90606 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 146.5-4 chr1 163545043 163545303 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger -121982 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 148.75-73 chr4 107312050 107312451 + 0.75 NA Intergenic Intergenic -275937 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 151.5-62 chr3 22423746 22424131 + 0.75 NA Intergenic Intergenic 466799 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 241.75-17 chr4 143361502 143361832 + 0.75 NA intron (NM_207123, intron 1 of 10) MLT1N2|LTR|ERVL-MaLR 18207 NR_036091 100423017 NR_036091 ENSG00000265623 MIR3139 - microRNA 3139 ncRNA 206.25-31 chr4 62082248 62082587 + 0.75 NA intron (NR_110595, intron 6 of 7) intron (NR_110595, intron 6 of 7) 79348 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 146.75-44 chr19 32686066 32686413 + 0.75 NA Intergenic AluSx|SINE|Alu -5722 NM_001105570 390916 Hs.203961 NM_001105570 ENSG00000213965 NUDT19 RP2 nudix hydrolase 19 protein-coding 156.75-92 chr7 35311213 35311671 + 0.75 NA Intergenic (TATATAT)n|Simple_repeat|Simple_repeat -2413 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 190.25-67 chrX 100414492 100414987 + 0.75 NA Intergenic Intergenic -4466 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 150.25-85 chr5 129939412 129939684 + 0.75 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 35083 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 173-21 chr12 14270530 14270997 + 0.75 NA Intergenic MER34A|LTR|ERV1 -94869 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 270.5-19 chr7 32188900 32189508 + 0.75 NA intron (NM_001322059, intron 2 of 17) intron (NM_001322059, intron 2 of 17) 110124 NM_001191058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 164.5-37 chr2 195553626 195554078 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -103106 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 161-52 chr20 39981344 39981738 + 0.75 NA Intergenic Intergenic -22920 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 269-10 chr5 46234312 46234697 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -538124 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 305.75-3 chr12 122825711 122826328 + 0.75 NA intron (NM_201435, intron 12 of 12) intron (NM_201435, intron 12 of 12) -8729 NM_001303099 9026 Hs.524815 NM_003959 ENSG00000130787 HIP1R HIP12|HIP3|ILWEQ huntingtin interacting protein 1 related protein-coding 225.5-42 chr5 115276786 115277274 + 0.75 NA exon (NM_152549, exon 4 of 10) exon (NM_152549, exon 4 of 10) -14153 NM_005023 5229 Hs.254006 NM_005023 ENSG00000164219 PGGT1B BGGI|GGTI protein geranylgeranyltransferase type I subunit beta protein-coding 204.5-32 chr5 89255489 89256010 + 0.75 NA intron (NR_136219, intron 7 of 9) intron (NR_136219, intron 7 of 9) -351644 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 243.5-18 chr5 23017973 23018370 + 0.75 NA Intergenic Intergenic -164827 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 208-10 chr13 39721243 39721707 + 0.75 NA intron (NM_001145079, intron 15 of 18) MLT1H2-int|LTR|ERVL-MaLR -57340 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 216.5-27 chr3 181814683 181815260 + 0.75 NA Intergenic Intergenic 103046 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 216.5-31 chr4 165959224 165959660 + 0.75 NA intron (NM_001204760, intron 1 of 9) L1PA3|LINE|L1 86205 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 230-7 chr15 56997125 56997511 + 0.75 NA intron (NM_207038, intron 3 of 19) L1PA16|LINE|L1 77873 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 211.25-14 chr14 82202416 82202851 + 0.75 NA Intergenic Intergenic -439999 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 189.75-55 chr4 110949671 110950047 + 0.75 NA Intergenic Intergenic -89212 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 214.5-34 chr3 172845359 172845683 + 0.75 NA Intergenic MERX|DNA|TcMar-Tigger 94519 NM_001349099 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 173.25-76 chr8 133708617 133708920 + 0.75 NA Intergenic MIR|SINE|MIR -24702 NR_134462 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 195.75-59 chr5 97983275 97983724 + 0.75 NA Intergenic MIR|SINE|MIR 142741 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 240.75-21 chr5 179305515 179306106 + 0.75 NA intron (NM_014244, intron 2 of 21) L1MEf|LINE|L1 39651 NM_021599 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 289.75-16 chr5 102116345 102116995 + 0.75 NA Intergenic MamRep4096|DNA|hAT-Tip100 179614 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 162.75-45 chr21 21539914 21540270 + 0.75 NA 3' UTR (NM_001352591, exon 18 of 18) 3' UTR (NM_001352591, exon 18 of 18) 197227 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 171-32 chr2 107093134 107093424 + 0.75 NA Intergenic Intergenic -206170 NM_001142352 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 280.25-3 chr11 108690853 108691412 + 0.75 NA intron (NM_004398, intron 7 of 17) Charlie2b|DNA|hAT-Charlie 26063 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 165.5-43 chr2 6500305 6500673 + 0.75 NA Intergenic (CATATA)n|Simple_repeat|Simple_repeat -125067 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 204.25-18 chr17 69254099 69254539 + 0.75 NA exon (NM_172232, exon 32 of 39) exon (NM_172232, exon 32 of 39) -9504 NM_080282 10349 Hs.25377 NM_080282 ENSG00000154263 ABCA10 EST698739 ATP binding cassette subfamily A member 10 protein-coding 323.75-6 chr4 63229722 63230412 + 0.75 NA Intergenic Intergenic -1068302 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 215.75-38 chr8 84283529 84283951 + 0.75 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 99074 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 187-7 chr11 88318933 88319211 + 0.75 NA intron (NM_001814, intron 2 of 6) intron (NM_001814, intron 2 of 6) 18664 NM_001814 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 178.75-24 chr18 9623075 9623515 + 0.75 NA Intergenic L1MB8|LINE|L1 8031 NR_110774 101927323 Hs.151204 NR_110773 ENSG00000263627 PPP4R1-AS1 - PPP4R1 antisense RNA 1 ncRNA 149-31 chr18 23318359 23318765 + 0.75 NA intron (NM_032933, intron 13 of 14) intron (NM_032933, intron 13 of 14) 119399 NM_032933 85019 Hs.137562 NM_032933 ENSG00000134490 TMEM241 C18orf45|hVVT transmembrane protein 241 protein-coding 200.75-12 chr12 129621578 129622151 + 0.75 NA intron (NM_133448, intron 2 of 8) intron (NM_133448, intron 2 of 8) 282161 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 173.5-32 chr2 48320947 48321237 + 0.75 NA intron (NM_002158, intron 1 of 6) L2c|LINE|L2 6410 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 167.5-70 chr4 179884508 179884881 + 0.75 NA Intergenic Intergenic 1274455 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 319.25-4 chr5 53254397 53254979 + 0.75 NA Intergenic Intergenic 144846 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 227.25-10 chr12 72109270 72109864 + 0.75 NA Intergenic MLT1L|LTR|ERVL-MaLR -163182 NM_013381 29953 Hs.199814 NM_013381 ENSG00000072657 TRHDE PAP-II|PGPEP2|TRH-DE thyrotropin releasing hormone degrading enzyme protein-coding 204.25-29 chr3 73959265 73959561 + 0.75 NA Intergenic MER102c|DNA|hAT-Charlie 150169 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 225-3 chr10 66954717 66955263 + 0.75 NA intron (NM_178011, intron 2 of 2) intron (NM_178011, intron 2 of 2) 28954 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 182.25-5 chr1 248325012 248325458 + 0.75 NA promoter-TSS (NM_001004691) promoter-TSS (NM_001004691) -667 NM_001004691 391196 Hs.530570 NM_001004691 ENSG00000177186 OR2M7 OR1-58 olfactory receptor family 2 subfamily M member 7 protein-coding 162.5-90 chr8 139566908 139567224 + 0.75 NA Intergenic L3|LINE|CR1 136057 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 191-54 chr9 28772104 28772564 + 0.75 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) -53029 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 148.25-56 chr3 17782643 17782985 + 0.75 NA Intergenic LOR1a|LTR|ERV1 39870 NR_135536 105376975 Hs.543238 NR_135536 LOC105376975 - uncharacterized LOC105376975 ncRNA 146.5-103 chr8 109870703 109871102 + 0.75 NA Intergenic MIR|SINE|MIR 104869 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 216.5-15 chr2 13460426 13461069 + 0.75 NA Intergenic AluSx1|SINE|Alu -453734 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 234.25-22 chr9 35523297 35523754 + 0.75 NA intron (NM_001330740, intron 1 of 10) intron (NM_001330740, intron 1 of 10) -15107 NM_001135999 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 172-31 chr17 67918350 67918715 + 0.75 NA intron (NM_182641, intron 11 of 27) intron (NM_182641, intron 11 of 27) 75074 NM_181656 284018 Hs.90790 NM_181655 ENSG00000186665 C17orf58 - chromosome 17 open reading frame 58 protein-coding 177.75-21 chr17 18346674 18346998 + 0.75 NA intron (NM_004169, intron 5 of 11).2 MER47A|DNA|TcMar-Tigger -5950 NR_106836 102466733 NR_106836 ENSG00000283772 MIR6778 hsa-mir-6778 microRNA 6778 ncRNA 186-40 chr5 126285461 126285742 + 0.75 NA promoter-TSS (NR_105039) promoter-TSS (NR_105039) -426 NR_105040 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 185.25-59 chr3 192556863 192557203 + 0.75 NA intron (NM_004113, intron 2 of 5) L1MC1|LINE|L1 42011 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 165.5-87 chr7 9724342 9724648 + 0.75 NA Intergenic Intergenic 90225 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 165.25-61 chr6 156125212 156125514 + 0.75 NA Intergenic Intergenic 178566 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 199.25-35 chr2 191607771 191608123 + 0.75 NA Intergenic Intergenic -70125 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 149.25-106 chr8 40276070 40276375 + 0.75 NA Intergenic L1MC1|LINE|L1 67141 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 248-8 chr20 31072578 31073159 + 0.75 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -184796 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 244.5-16 chr17 81469304 81469710 + 0.75 NA Intergenic Intergenic -18319 NR_036152 100422944 NR_036152 ENSG00000266189 MIR3186 mir-3186 microRNA 3186 ncRNA 193.75-53 chr5 161827647 161828108 + 0.75 NA Intergenic Intergenic -19314 NM_000806 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 156-86 chr7 17553953 17554348 + 0.75 NA intron (NR_110013, intron 1 of 3) L2|LINE|L2 4759 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 223.5-20 chr17 74012236 74012616 + 0.75 NA Intergenic Intergenic -183889 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 165.5-83 chr6 145829728 145830012 + 0.75 NA intron (NR_038246, intron 2 of 2) intron (NR_038246, intron 2 of 2) 14994 NR_038244 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 236-12 chr15 35573646 35574244 + 0.75 NA intron (NR_038251, intron 1 of 2) intron (NR_038251, intron 1 of 2) 27750 NR_038251 100507466 Hs.536420 NR_038251 ENSG00000248079 DPH6-DT ATPBD4-AS1|DPH6-AS1 DPH6 divergent transcript ncRNA 258 chr1 75803847 75804365 + 0.75 NA intron (NM_002440, intron 2 of 19) intron (NM_002440, intron 2 of 19) 7224 NM_002440 4438 Hs.216639 NM_002440 ENSG00000057468 MSH4 - mutS homolog 4 protein-coding 248.25-18 chr7 51273516 51274220 + 0.75 NA intron (NM_015198, intron 1 of 12) intron (NM_015198, intron 1 of 12) 42941 NM_015198 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 166.5-9 chr11 103566704 103567118 + 0.75 NA Intergenic MIR|SINE|MIR -282995 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 177.5-12 chr12 15793596 15794097 + 0.75 NA Intergenic Intergenic -4458 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 204-4 chr1 203724127 203724543 + 0.75 NA intron (NM_001001396, intron 19 of 21) AluY|SINE|Alu -5246 NR_003019 677843 Hs.676135 NR_003019 ENSG00000221643 SNORA77 ACA63|SNORA77A small nucleolar RNA, H/ACA box 77 snoRNA 291.5-8 chr4 161943916 161944631 + 0.75 NA intron (NM_001128428, intron 3 of 14) intron (NM_001128428, intron 3 of 14) -78460 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 257.75-21 chr6 23569113 23569849 + 0.75 NA Intergenic Intergenic -556734 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 220.5-30 chr5 92149623 92150232 + 0.75 NA Intergenic Intergenic -766610 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 263.5-24 chr8 99238541 99239116 + 0.75 NA intron (NM_017890, intron 17 of 61) intron (NM_017890, intron 17 of 61) 225562 NM_015243 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 169.25-18 chr16 52167082 52167481 + 0.75 NA Intergenic MER5B|DNA|hAT-Charlie 82000 NR_104655 102467079 Hs.98466 NR_104655 ENSG00000261749 LINC02180 - long intergenic non-protein coding RNA 2180 ncRNA 224.75-23 chr3 105558703 105559234 + 0.75 NA intron (NM_001243280, intron 13 of 14) MIRb|SINE|MIR 192059 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 214.75-26 chr2 143531655 143532052 + 0.75 NA intron (NM_018460, intron 10 of 13) MamSINE1|SINE|tRNA-RTE 402434 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 199.25-29 chr18 13360095 13360463 + 0.75 NA intron (NM_181482, intron 2 of 5) intron (NM_181482, intron 2 of 5) 67255 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 181.75-58 chr6 61632122 61632470 + 0.75 NA intron (NR_146874, intron 13 of 13) intron (NR_146874, intron 13 of 13) 58166 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 181.5-64 chr7 3449389 3449689 + 0.75 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 148287 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 185.75-35 chr2 32595541 32595880 + 0.75 NA intron (NM_016252, intron 68 of 73) intron (NM_016252, intron 68 of 73) -20892 NR_125793 103752586 Hs.666092 NR_125793 ENSG00000279897 BIRC6-AS2 linc-birc6|megamind BIRC6 antisense RNA 2 ncRNA 165.5-68 chr5 39179838 39180081 + 0.75 NA intron (NM_001243093, intron 2 of 18) L2c|LINE|L2 39604 NM_001465 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 253.5-29 chrX 98219105 98219581 + 0.75 NA Intergenic Charlie9|DNA|hAT-Charlie -654808 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 151-26 chr16 64216270 64216638 + 0.75 NA Intergenic Intergenic 905609 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 165.25-50 chr5 14235129 14235431 + 0.75 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 91938 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 184.5-46 chr2 155265662 155266046 + 0.75 NA Intergenic Intergenic 567159 NM_002239 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 261.5-16 chr3 96826118 96826682 + 0.75 NA intron (NM_001080448, intron 1 of 17) intron (NM_001080448, intron 1 of 17) 11806 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 251.25-10 chr15 71180918 71181366 + 0.75 NA intron (NR_120349, intron 1 of 1) intron (NR_120349, intron 1 of 1) 7917 NR_120349 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 169.75-65 chr6 140927994 140928384 + 0.75 NA Intergenic L1PREC2|LINE|L1 244375 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 193-25 chr2 78740457 78740778 + 0.75 NA Intergenic Intergenic 195086 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 179.25-75 chr8 115492025 115492417 + 0.75 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 175792 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 303.25-12 chr6 35324575 35325286 + 0.75 NA Intergenic Intergenic -17628 NM_177435 5467 Hs.696032 NM_006238 ENSG00000112033 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator activated receptor delta protein-coding 192-51 chr5 143944389 143944920 + 0.75 NA Intergenic L1PA15|LINE|L1 132493 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 222.5-24 chr2 126122305 126122840 + 0.75 NA Intergenic L1MD1|LINE|L1 -4587 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 291.5-4 chr16 87750908 87751548 + 0.75 NA intron (NM_001184856, intron 4 of 10) AluSg|SINE|Alu 14758 NM_001184854 54758 Hs.123450 NM_017566 ENSG00000104731 KLHDC4 - kelch domain containing 4 protein-coding 198-21 chr3 14105463 14105813 + 0.75 NA Intergenic L1M5|LINE|L1 19232 NM_001098502 131474 Hs.517815 NM_144636 ENSG00000163528 CHCHD4 MIA40|TIMM40 coiled-coil-helix-coiled-coil-helix domain containing 4 protein-coding 171.5-21 chr11 65804085 65804406 + 0.75 NA Intergenic Intergenic -13377 NR_108085 101927828 Hs.666246 NR_108085 ENSG00000255120 OVOL1-AS1 - OVOL1 antisense RNA 1 ncRNA 238.5-42 chr8 142899651 142900247 + 0.75 NA Intergenic ERVL-B4-int|LTR|ERVL 17894 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 182.75-52 chr4 177083636 177084063 + 0.75 NA Intergenic Intergenic 208147 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 194.75-44 chr7 12309510 12309956 + 0.75 NA Intergenic MER65-int|LTR|ERV1 94132 NM_001135924 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 213.5-42 chr7 81857071 81857471 + 0.75 NA Intergenic Intergenic -87224 NM_001010932 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 235.75-10 chr14 52294972 52295602 + 0.75 NA Intergenic L1ME3A|LINE|L1 -19025 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 151.5-81 chr5 91796155 91796424 + 0.75 NA Intergenic Intergenic -412972 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 147-110 chr8 76727996 76728346 + 0.75 NA intron (NM_024721, intron 3 of 10) intron (NM_024721, intron 3 of 10) -44896 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 187.5-18 chr14 83087327 83087702 + 0.75 NA Intergenic Intergenic 444882 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 234.75-20 chr4 179468706 179469183 + 0.75 NA Intergenic Intergenic -1561008 NR_108093 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 156.75-22 chr11 63704264 63704520 + 0.75 NA intron (NR_049750, intron 1 of 5) intron (NR_049750, intron 1 of 5) 22892 NR_049751 10313 Hs.743229 NM_006054 ENSG00000133318 RTN3 ASYIP|HAP|NSPL2|NSPLII|RTN3-A1 reticulon 3 protein-coding 249.5-24 chr6 41145203 41145654 + 0.75 NA Intergenic L1MB7|LINE|L1 8921 NM_001271807 340205 Hs.117331 NM_178174 ENSG00000161911 TREML1 GLTL1825|PRO3438|TLT-1|TLT1|dJ238O23.3 triggering receptor expressed on myeloid cells like 1 protein-coding 187.75-22 chr15 56493447 56493937 + 0.75 NA Intergenic MSTD|LTR|ERVL-MaLR -28555 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 199.75-60 chr8 125769650 125769965 + 0.75 NA Intergenic Intergenic 181390 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 153.5-97 chr7 34108162 34108461 + 0.75 NA intron (NM_133468, intron 14 of 15) intron (NM_133468, intron 14 of 15) 202772 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 218.75-21 chr5 115790555 115790953 + 0.75 NA Intergenic L1MEj|LINE|L1 25903 NR_136621 1036 Hs.442378 NM_001801 ENSG00000129596 CDO1 CDO-I cysteine dioxygenase type 1 protein-coding 209-43 chr7 39128872 39129301 + 0.75 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -115519 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 257.5-8 chr16 48468181 48468592 + 0.75 NA Intergenic L1ME3A|LINE|L1 -82973 NM_003031 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 231.5-13 chr2 35255797 35256491 + 0.75 NA Intergenic L1MC4|LINE|L1 -215261 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 195.25-25 chr2 59121077 59121487 + 0.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -96426 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 173-19 chr11 106617755 106617996 + 0.75 NA Intergenic Intergenic 366468 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 220.75-3 chr10 63175229 63175583 + 0.75 NA intron (NM_001322258, intron 23 of 24) intron (NM_001322258, intron 23 of 24) 42078 NM_030759 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 201.5-63 chr8 79977374 79977851 + 0.75 NA intron (NM_014018, intron 2 of 2) AluSx1|SINE|Alu 52647 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 173.25-49 chr3 110410210 110410564 + 0.75 NA Intergenic Intergenic 659572 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 164-36 chr2 108209494 108209879 + 0.75 NA intron (NR_131251, intron 1 of 4) LOR1b|LTR|ERV1 8155 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 197.75-38 chr2 166694948 166695357 + 0.75 NA Intergenic (TATTAT)n|Simple_repeat|Simple_repeat -193335 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 219.5-23 chr5 90009699 90010086 + 0.75 NA Intergenic Intergenic 6828 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 167-2 chr1 71720543 71721081 + 0.75 NA intron (NM_173808, intron 3 of 6) intron (NM_173808, intron 3 of 6) 116200 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 168.75-4 chr1 178611890 178612172 + 0.75 NA Intergenic Intergenic -65718 NR_039622 100616328 NR_039622 ENSG00000266417 MIR4424 - microRNA 4424 ncRNA 201.25-26 chr2 203044271 203044622 + 0.75 NA intron (NM_001114132, intron 3 of 54) intron (NM_001114132, intron 3 of 54) 29567 NM_001114132 65065 Hs.648846 NM_198945 ENSG00000144426 NBEAL1 A530083I02Rik|ALS2CR16|ALS2CR17 neurobeachin like 1 protein-coding 226.75-18 chr20 54376422 54377094 + 0.75 NA Intergenic L1MEc|LINE|L1 -98835 NM_018431 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 179.75-24 chr18 41473406 41473866 + 0.75 NA Intergenic L1ME1|LINE|L1 47041 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 180.5-70 chr8 74882119 74882567 + 0.75 NA Intergenic Intergenic 57809 NM_001324403 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 217.25-18 chr18 1623325 1623891 + 0.75 NA Intergenic L1M4a1|LINE|L1 -263979 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 146.5-23 chr13 89018192 89018544 + 0.75 NA Intergenic Intergenic -216923 NR_047025 100874172 Hs.569291 NR_047025 LINC00440 - long intergenic non-protein coding RNA 440 ncRNA 219.75-29 chr3 87645429 87645995 + 0.75 NA Intergenic Intergenic -146994 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 215.75-39 chr8 108323012 108323625 + 0.75 NA Intergenic Intergenic -74601 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 189.75-12 chr1 168442477 168442902 + 0.75 NA Intergenic Intergenic -20033 NR_037851 100505918 Hs.568494 NR_037851 LOC100505918 - uncharacterized LOC100505918 ncRNA 204-27 chr3 28849485 28849790 + 0.75 NA Intergenic MER5A|DNA|hAT-Charlie 274359 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 198.25-22 chr2 123812463 123812897 + 0.75 NA Intergenic L1PA13|LINE|L1 212494 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 175.5-19 chr12 12339378 12339691 + 0.75 NA intron (NM_001363613, intron 3 of 4) AluJo|SINE|Alu 10708 NM_001363613 54682 Hs.591145 NM_018050 ENSG00000111261 MANSC1 9130403P13Rik|LOH12CR3 MANSC domain containing 1 protein-coding 151-57 chr22 49493699 49493986 + 0.75 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) 49624 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 200.25-34 chr4 67871944 67872336 + 0.75 NA intron (NM_004262, intron 1 of 9) MamGypsy2-LTR|LTR|Gypsy 11862 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 186.5-54 chr4 115607206 115607735 + 0.75 NA Intergenic Intergenic -493850 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 147-34 chr18 12166147 12166433 + 0.75 NA Intergenic L1MA2|LINE|L1 -34489 NR_049896 497259 Hs.451609 NR_049896 C18orf61 - uncharacterized LOC497259 ncRNA 283 chr10 74316174 74316719 + 0.75 NA intron (NM_001369124, intron 4 of 9) THE1D|LTR|ERVL-MaLR 139683 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 152.75-96 chr7 131257684 131258032 + 0.75 NA intron (NM_001145354, intron 2 of 18) AluJb|SINE|Alu 69921 NR_125364 100506881 Hs.660830 NR_125364 ENSG00000236753 MKLN1-AS MKLN1-AS2 MKLN1 antisense RNA ncRNA 258-15 chr5 120968827 120969315 + 0.75 NA Intergenic Intergenic -353479 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 150.5-98 chr5 145002712 145002923 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR 797426 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 296-2 chr1 225720633 225721081 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -56956 NM_001130440 6726 Hs.511425 NM_003133 ENSG00000143742 SRP9 ALURBP signal recognition particle 9 protein-coding 187.75-54 chr4 134864085 134864398 + 0.75 NA Intergenic Intergenic 259318 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 213.25-10 chr13 87643453 87644075 + 0.75 NA intron (NR_033829, intron 1 of 5) MLT1A0|LTR|ERVL-MaLR -25024 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 211.5-12 chr10 118953023 118953557 + 0.75 NA Intergenic Intergenic -76424 NM_199461 340719 Hs.591918 NM_199461 ENSG00000188613 NANOS1 EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A nanos C2HC-type zinc finger 1 protein-coding 147.25-90 chr6 152409373 152409831 + 0.75 NA exon (NM_033071, exon 43 of 146) exon (NM_033071, exon 43 of 146) 29072 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 197.25-4 chr1 172335901 172336251 + 0.75 NA intron (NM_015569, intron 17 of 20) MER20|DNA|hAT-Charlie -84609 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 205.75-21 chr13 59897067 59897393 + 0.75 NA intron (NM_001258369, intron 20 of 26) intron (NM_001258369, intron 20 of 26) -115488 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 215.5-54 chr9 117651227 117651611 + 0.75 NA intron (NR_109806, intron 2 of 5) MIRb|SINE|MIR 2813 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 302-5 chr5 28073179 28073902 + 0.75 NA Intergenic Intergenic 214125 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 280-9 chr6 25817522 25818057 + 0.75 NA intron (NM_005074, intron 6 of 12) intron (NM_005074, intron 6 of 12) 14263 NM_005074 6568 Hs.205816 NM_005074 ENSG00000124568 SLC17A1 NAPI-1|NPT-1|NPT1 solute carrier family 17 member 1 protein-coding 257.75-12 chr2 185528816 185529485 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger 209569 NR_110216 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 165.25-12 chr12 129923980 129924467 + 0.75 NA Intergenic Intergenic -20198 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 167.25-69 chr6 97013434 97013768 + 0.75 NA intron (NR_136579, intron 1 of 7) intron (NR_136579, intron 1 of 7) 3525 NR_136579 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 233.25-4 chr1 173005601 173005991 + 0.75 NA Intergenic L1M1|LINE|L1 45167 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 186.75-72 chr5 130685184 130685458 + 0.75 NA Intergenic L1MC4|LINE|L1 479935 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 198.5-48 chr6 55911393 55911762 + 0.75 NA Intergenic L1MEd|LINE|L1 -35987 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 190.75-47 chr3 148366459 148366909 + 0.75 NA intron (NR_146712, intron 4 of 4) Charlie23a|DNA|hAT-Charlie 85793 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 213.25-24 chr20 54685543 54685977 + 0.75 NA Intergenic Intergenic 210167 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 154.25-29 chr13 91165270 91165572 + 0.75 NA intron (NR_047004, intron 2 of 3) intron (NR_047004, intron 2 of 3) 46277 NR_047004 100874150 Hs.711947 NR_047004 LINC00379 - long intergenic non-protein coding RNA 379 ncRNA 220.25-31 chr4 77767239 77767762 + 0.75 NA intron (NM_001365006, intron 4 of 11) L1ME3E|LINE|L1 51564 NM_001365007 246175 Hs.592519 NM_144571 ENSG00000138767 CNOT6L CCR4b CCR4-NOT transcription complex subunit 6 like protein-coding 251.75-10 chr16 52303734 52304122 + 0.75 NA Intergenic Intergenic 45364 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 233.75-3 chr10 102929978 102930583 + 0.75 NA intron (NM_199076, intron 1 of 6) L1ME4c|LINE|L1 -11945 NR_160733 107984265 NR_160733 LOC107984265 - uncharacterized LOC107984265 ncRNA 286-2 chr17 34354303 34355103 + 0.75 NA Intergenic L1M5|LINE|L1 -1777 NM_005408 6357 Hs.414629 NM_005408 ENSG00000181374 CCL13 CKb10|MCP-4|NCC-1|NCC1|SCYA13|SCYL1 C-C motif chemokine ligand 13 protein-coding 157.5-67 chr4 70708434 70708750 + 0.75 NA intron (NM_001130709, intron 1 of 11) intron (NM_001130709, intron 1 of 11) 3655 NM_001130709 22902 Hs.740904 NM_014961 ENSG00000018189 RUFY3 RIPX|SINGAR1|ZFYVE30 RUN and FYVE domain containing 3 protein-coding 207.25-52 chr8 122407990 122408439 + 0.75 NA Intergenic Intergenic 160430 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 219.25-32 chr3 107449308 107449910 + 0.75 NA intron (NR_110039, intron 1 of 2) L2|LINE|L2 18679 NR_110039 101929607 Hs.252565 NR_110039 ENSG00000273125 LINC01990 - long intergenic non-protein coding RNA 1990 ncRNA 260-5 chr20 38046351 38047010 + 0.75 NA intron (NM_021215, intron 2 of 6) L2a|LINE|L2 12934 NM_021215 58490 Hs.278839 NM_021215 ENSG00000101413 RPRD1B C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2 regulation of nuclear pre-mRNA domain containing 1B protein-coding 237.5-7 chr14 37922095 37922611 + 0.75 NA Intergenic L1PA4|LINE|L1 -20229 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 173.5-55 chr3 123064517 123064975 + 0.75 NA Intergenic L2a|LINE|L2 -2279 NR_028444 10954 Hs.477352 NM_006810 ENSG00000065485 PDIA5 PDIR protein disulfide isomerase family A member 5 protein-coding 168.5-58 chr2 214201363 214201746 + 0.75 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -209500 NR_159945 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 181.25-42 chr3 166744335 166744776 + 0.75 NA Intergenic (TATATAC)n|Simple_repeat|Simple_repeat -154128 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 146.25-25 chr14 21158216 21158449 + 0.75 NA Intergenic Intergenic -2269 NM_001004731 390445 Hs.553768 NM_001004731 ENSG00000169327 OR5AU1 OR14-38 olfactory receptor family 5 subfamily AU member 1 protein-coding 184-39 chr4 41191412 41191738 + 0.75 NA intron (NM_173075, intron 1 of 16) L1MA9|LINE|L1 22967 NM_001330656 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 146.75-42 chr18 52276306 52276640 + 0.75 NA Intergenic (TTATCTT)n|Simple_repeat|Simple_repeat -63724 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 156.75-68 chr4 27886185 27886498 + 0.75 NA Intergenic Intergenic 668862 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 153.75-104 chrX 41192872 41193194 + 0.75 NA intron (NM_001039591, intron 26 of 44) L2a|LINE|L2 -82706 NR_135616 105373185 Hs.546119 NR_135616 ENSG00000223714 LINC02601 - long intergenic non-protein coding RNA 2601 ncRNA 212.25-40 chr7 17560862 17561357 + 0.75 NA Intergenic MER5B|DNA|hAT-Charlie -2200 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 230.75-19 chr19 56639517 56640126 + 0.75 NA intron (NR_163262, intron 3 of 5) intron (NR_163262, intron 3 of 5) -3338 NM_001193628 147670 Hs.336588 NM_001193628 ENSG00000268182 SMIM17 - small integral membrane protein 17 protein-coding 302.25-2 chr1 219995152 219995768 + 0.75 NA intron (NM_004446, intron 18 of 31) intron (NM_004446, intron 18 of 31) 51045 NM_004446 2058 Hs.497788 NM_004446 ENSG00000136628 EPRS EARS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS glutamyl-prolyl-tRNA synthetase protein-coding 240.75-9 chr15 55003432 55003789 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR -53137 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 169.5-34 chr15 85501377 85501713 + 0.75 NA intron (NM_007200, intron 2 of 36) intron (NM_007200, intron 2 of 36) -118405 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 150.25-93 chr6 146765132 146765409 + 0.75 NA intron (NM_024694, intron 28 of 35) L1MEh|LINE|L1 38554 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 179.75-52 chr6 100738361 100738860 + 0.75 NA intron (NM_006828, intron 10 of 41) L1PA11|LINE|L1 142719 NM_006828 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 182.75-33 chr2 29260636 29261135 + 0.75 NA intron (NM_004304, intron 11 of 28) HAL1M8|LINE|L1 -36985 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 160.25-13 chr11 78753011 78753254 + 0.75 NA intron (NM_001098816, intron 19 of 33) MIRb|SINE|MIR -178268 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 164-40 chr20 5526857 5527111 + 0.75 NA Intergenic L1MD|LINE|L1 -16982 NR_109860 101929207 Hs.516871 NR_109860 ENSG00000225640 LINC01729 - long intergenic non-protein coding RNA 1729 ncRNA 224-23 chr4 31999218 31999583 + 0.75 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) 2021 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 188.5-21 chr14 58505604 58506028 + 0.75 NA intron (NM_001329944, intron 27 of 31) intron (NM_001329944, intron 27 of 31) 66135 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 189-42 chr3 189324937 189325412 + 0.75 NA 3' UTR (NM_198485, exon 6 of 6) 3' UTR (NM_198485, exon 6 of 6) -84580 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 193.5-52 chr4 62030132 62030569 + 0.75 NA intron (NM_001322246, intron 21 of 25) intron (NM_001322246, intron 21 of 25) 131415 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 167.25-8 chr10 84265666 84266092 + 0.75 NA Intergenic MER31A|LTR|ERV1 -14101 NR_038220 170425 Hs.434131 NR_038220 ENSG00000229404 LINC00858 CRCAL-2 long intergenic non-protein coding RNA 858 ncRNA 148.25-13 chr10 126649997 126650290 + 0.75 NA intron (NM_001350922, intron 1 of 8) intron (NM_001350922, intron 1 of 8) 20367 NR_146939 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 375.75-2 chr11 30969595 30970118 + 0.75 NA intron (NM_001367979, intron 20 of 38) intron (NM_001367979, intron 20 of 38) 22830 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 186.25-2 chr1 171429681 171430012 + 0.75 NA Intergenic Intergenic -55684 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 184-43 chr5 63503711 63504036 + 0.75 NA Intergenic L1PA14|LINE|L1 458419 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 188.25-60 chr7 144575393 144575972 + 0.75 NA intron (NM_001042482, intron 6 of 7) intron (NM_001042482, intron 6 of 7) 163216 NM_001350884 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 270.25-5 chr16 35397429 35397808 + 0.75 NA Intergenic Intergenic 34087 NR_027079 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 209.5-45 chr6 68087109 68087571 + 0.75 NA Intergenic AluJr|SINE|Alu 31989 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 165.5-55 chr20 54155021 54155344 + 0.75 NA intron (NM_000782, intron 11 of 11) intron (NM_000782, intron 11 of 11) 18804 NM_001128915 1591 Hs.89663 NM_000782 ENSG00000019186 CYP24A1 CP24|CYP24|HCAI|HCINF1|P450-CC24 cytochrome P450 family 24 subfamily A member 1 protein-coding 183.75-33 chr16 51706977 51707364 + 0.75 NA Intergenic L1MEc|LINE|L1 -55349 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 265.75-2 chr1 160650046 160650567 + 0.75 NA Intergenic MER63C|DNA|hAT-Blackjack -2995 NM_003037 6504 Hs.523660 NM_003037 ENSG00000117090 SLAMF1 CD150|CDw150|SLAM signaling lymphocytic activation molecule family member 1 protein-coding 155.75-95 chr7 95826716 95827109 + 0.75 NA intron (NM_001135557, intron 4 of 15) intron (NM_001135557, intron 4 of 15) 54406 NM_001135557 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 227.5-5 chr10 129487393 129488004 + 0.75 NA intron (NM_002412, intron 1 of 4) L1M5|LINE|L1 20457 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 266.5-13 chr4 62303379 62303817 + 0.75 NA Intergenic L1MA3|LINE|L1 -141833 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 151.5-76 chr4 66309644 66310035 + 0.75 NA Intergenic Intergenic 33015 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 188.75-49 chr4 171756324 171756732 + 0.75 NA Intergenic Intergenic -56876 NM_001034845 442117 Hs.386236 NM_001034845 ENSG00000174473 GALNTL6 GALNACT20|GALNT17|GalNAc-T6L polypeptide N-acetylgalactosaminyltransferase like 6 protein-coding 195.5-18 chr15 59414214 59414623 + 0.75 NA Intergenic MER34A|LTR|ERV1 -23768 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 193.75-60 chr9 82276559 82277090 + 0.75 NA Intergenic Intergenic 288052 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 235.25-10 chr17 59185151 59185585 + 0.75 NA intron (NM_018304, intron 3 of 9) intron (NM_018304, intron 3 of 9) -24642 NM_018149 55181 Hs.7296 NM_018149 ENSG00000167447 SMG8 C17orf71 SMG8 nonsense mediated mRNA decay factor protein-coding 151.25-69 chr4 63929933 63930353 + 0.75 NA Intergenic L1MA5|LINE|L1 479307 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 173.5-80 chr7 40072527 40072835 + 0.75 NA intron (NM_003718, intron 9 of 13) Charlie1a|DNA|hAT-Charlie 61941 NM_138701 136647 Hs.654989 NM_138701 ENSG00000168303 MPLKIP ABHS|C7orf11|ORF20|TTD4 M-phase specific PLK1 interacting protein protein-coding 164-58 chr4 96685046 96685398 + 0.75 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 374519 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 229.25-19 chr3 163754894 163755330 + 0.75 NA Intergenic L1PA14|LINE|L1 416444 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 200.25-33 chr3 89915462 89916125 + 0.75 NA Intergenic LOR1a|LTR|ERV1 808172 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 198.25-15 chr17 48335088 48335436 + 0.75 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) 40915 NR_131239 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 182-4 chr1 239316873 239317359 + 0.75 NA Intergenic MIR3|SINE|MIR -69452 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 150.75-101 chr9 36560547 36560808 + 0.75 NA Intergenic AluSx3|SINE|Alu -12185 NM_001256685 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 301.5-10 chr4 39434543 39435352 + 0.75 NA intron (NM_175737, intron 2 of 4) AluSx1|SINE|Alu 23037 NR_049857 100847065 NR_049857 ENSG00000264621 MIR5591 - microRNA 5591 ncRNA 174.75-3 chr1 64549564 64550053 + 0.75 NA intron (NM_001293274, intron 1 of 25) (T)n|Simple_repeat|Simple_repeat -30039 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 182.5-65 chr6 64832150 64832488 + 0.75 NA intron (NM_001292009, intron 19 of 43) intron (NM_001292009, intron 19 of 43) -469099 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 175.75-43 chr3 27424312 27424625 + 0.75 NA intron (NM_001258380, intron 6 of 23) intron (NM_001258380, intron 6 of 23) 32310 NM_001258380 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 161.75-55 chr3 192816284 192816628 + 0.75 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) -88915 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 196.75-53 chr6 165473328 165473961 + 0.75 NA intron (NM_006661, intron 4 of 22) intron (NM_006661, intron 4 of 22) -164039 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 278.75-3 chr16 28949719 28950538 + 0.75 NA promoter-TSS (NM_032815) promoter-TSS (NM_032815) -869 NM_032815 84901 Hs.513470 NM_032815 ENSG00000176953 NFATC2IP ESC2|NIP45|RAD60 nuclear factor of activated T cells 2 interacting protein protein-coding 159-31 chr2 51544433 51544717 + 0.75 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 511974 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 163.25-29 chr15 56551184 56551604 + 0.75 NA Intergenic L1ME1|LINE|L1 -86257 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 145.75-119 chr7 86334560 86334862 + 0.75 NA Intergenic L2b|LINE|L2 -309198 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 203.25-46 chr9 2323552 2323850 + 0.75 NA Intergenic L1ME3G|LINE|L1 165245 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 186.25-19 chr17 72185211 72185515 + 0.75 NA Intergenic Intergenic 64343 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 169.25-52 chr8 3501283 3501621 + 0.75 NA intron (NM_033225, intron 10 of 69) intron (NM_033225, intron 10 of 69) -773001 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 202.5-33 chr2 188115154 188115819 + 0.75 NA intron (NR_126396, intron 2 of 2) intron (NR_126396, intron 2 of 2) 172205 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 179.75-6 chr10 119911550 119911930 + 0.75 NA intron (NM_007190, intron 5 of 18) AluJb|SINE|Alu 19010 NR_037771 11196 Hs.435004 NM_007190 ENSG00000107651 SEC23IP MSTP053|P125|P125A SEC23 interacting protein protein-coding 156.25-49 chr20 58656537 58656807 + 0.75 NA intron (NM_001134772, intron 1 of 7) intron (NM_001134772, intron 1 of 7) 5389 NM_001204868 8675 Hs.307913 NM_003763 ENSG00000124222 STX16 SYN16 syntaxin 16 protein-coding 185.5-44 chr22 25656984 25657423 + 0.75 NA intron (NM_005160, intron 3 of 20) L1MEf|LINE|L1 -84985 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 172.5-8 chr10 107533998 107534423 + 0.75 NA Intergenic Intergenic -369504 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 210-56 chr8 107290378 107290764 + 0.75 NA intron (NM_001199859, intron 6 of 8) intron (NM_001199859, intron 6 of 8) 45944 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 242.75-4 chr12 75590652 75591306 + 0.75 NA Intergenic Intergenic -79370 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 163-30 chr14 66981383 66981731 + 0.75 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -207883 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 246.25-15 chr14 67035097 67035712 + 0.75 NA intron (NM_001024218, intron 9 of 21) L1MB2|LINE|L1 -154036 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 153.5 chr1 48602370 48602708 + 0.75 NA intron (NM_001323575, intron 9 of 12) intron (NM_001323575, intron 9 of 12) -130331 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 299.25-6 chr14 70356124 70356855 + 0.75 NA intron (NM_001202548, intron 3 of 5) intron (NM_001202548, intron 3 of 5) 3194 NM_016468 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 313.75-3 chr10 65360965 65361543 + 0.75 NA Intergenic MLT2B2|LTR|ERVL -210171 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 363.25-2 chr2 184810955 184811453 + 0.75 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 212675 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 202-37 chr4 136876754 136877185 + 0.75 NA intron (NR_149105, intron 3 of 3) intron (NR_149105, intron 3 of 3) -316787 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 173-71 chr6 150154757 150155143 + 0.75 NA intron (NM_030949, intron 1 of 3) intron (NM_030949, intron 1 of 3) 11906 NM_030949 81706 Hs.486798 NM_030949 ENSG00000198729 PPP1R14C CPI17-like|KEPI|NY-BR-81 protein phosphatase 1 regulatory inhibitor subunit 14C protein-coding 164.5-99 chr8 122744947 122745301 + 0.75 NA Intergenic Intergenic -36531 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 177.75-34 chr2 196950983 196951459 + 0.75 NA Intergenic L1ME4b|LINE|L1 -24514 NM_001321100 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 215.25-47 chr8 92203749 92204300 + 0.75 NA Intergenic MER41A|LTR|ERV1 -100639 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 185.25-75 chr8 78401683 78402066 + 0.75 NA Intergenic Intergenic -114466 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 148.75-69 chr4 32380223 32380427 + 0.75 NA Intergenic Tigger3c|DNA|TcMar-Tigger 29287 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 221-22 chr4 64589687 64590270 + 0.75 NA Intergenic MSTA-int|LTR|ERVL-MaLR -180518 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 187.25-58 chr6 147805173 147805615 + 0.75 NA Intergenic Intergenic 296704 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 317-2 chr14 62824616 62825303 + 0.75 NA intron (NM_139318, intron 8 of 10) L1PA16|LINE|L1 220499 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 207-38 chr4 124976701 124977207 + 0.75 NA Intergenic Intergenic -264222 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 261.75-19 chr8 127093654 127094172 + 0.75 NA Intergenic Charlie7|DNA|hAT-Charlie -11692 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 150.75-15 chr11 82685700 82686001 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR 48014 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 196-52 chr8 140117332 140117683 + 0.75 NA intron (NM_001160372, intron 17 of 22) MLT1A1|LTR|ERVL-MaLR -16972 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 190.75-50 chr5 3928547 3929003 + 0.75 NA Intergenic L1PA13|LINE|L1 332943 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 190.75-39 chr21 43980352 43980838 + 0.75 NA intron (NM_001369881, intron 8 of 9) MIR|SINE|MIR -31714 NM_003274 7109 Hs.126221 NM_003274 ENSG00000160218 TRAPPC10 EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30 trafficking protein particle complex 10 protein-coding 293.75-6 chr3 73114831 73115571 + 0.75 NA Intergenic MIRb|SINE|MIR 53542 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 151.5-29 chr15 39694860 39695175 + 0.75 NA intron (NM_152597, intron 10 of 11) intron (NM_152597, intron 10 of 11) 87824 NM_152597 161835 Hs.129598 NM_152597 ENSG00000150667 FSIP1 HSD10 fibrous sheath interacting protein 1 protein-coding 203.75-39 chr5 161411569 161412119 + 0.75 NA intron (NM_000813, intron 5 of 9) intron (NM_000813, intron 5 of 9) 136280 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 213.25-8 chr11 76432970 76433499 + 0.75 NA Intergenic AluJr4|SINE|Alu -11784 NM_001300943 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 154-11 chr1 191635281 191635626 + 0.75 NA Intergenic L1ME2|LINE|L1 -406955 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 197.25-6 chr1 189657340 189657712 + 0.75 NA Intergenic Intergenic 818484 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 191.25-62 chr8 62704576 62705004 + 0.75 NA intron (NM_001304533, intron 3 of 6) intron (NM_001304533, intron 3 of 6) -273071 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 196.5-54 chr7 110118659 110119143 + 0.75 NA Intergenic Intergenic -158688 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 156.5-115 chr9 89119590 89119937 + 0.75 NA intron (NM_016848, intron 1 of 11) L1ME3G|LINE|L1 59055 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 162.25-2 chr1 82953137 82953445 + 0.75 NA intron (NR_147074, intron 2 of 10) L1PB1|LINE|L1 31631 NR_110632 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 163.25-23 chr12 49113946 49114386 + 0.75 NA Intergenic AluSp|SINE|Alu -3266 NM_001300751 55716 Hs.272838 NM_018113 ENSG00000139636 LMBR1L LIMR limb development membrane protein 1 like protein-coding 263-15 chr8 87814945 87815560 + 0.75 NA Intergenic AluJb|SINE|Alu 58763 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 224-19 chr22 45083942 45084339 + 0.75 NA Intergenic Intergenic 68444 NR_038957 100506714 Hs.189902 NR_038956 NUP50-DT NUP50-AS1 NUP50 divergent transcript ncRNA 342-3 chr10 58288295 58289011 + 0.75 NA 3' UTR (NM_018464, exon 3 of 3) 3' UTR (NM_018464, exon 3 of 3) 19491 NM_018464 55847 Hs.370102 NM_018464 ENSG00000122873 CISD1 C10orf70|MDS029|ZCD1|mitoNEET CDGSH iron sulfur domain 1 protein-coding 173.25-16 chr12 4758123 4758429 + 0.75 NA intron (NM_017417, intron 6 of 10) intron (NM_017417, intron 6 of 10) 37876 NM_017417 26290 Hs.511985 NM_017417 ENSG00000130035 GALNT8 GALNAC-T8 polypeptide N-acetylgalactosaminyltransferase 8 protein-coding 154.75-78 chr4 139375538 139375898 + 0.75 NA intron (NM_057175, intron 15 of 19) intron (NM_057175, intron 15 of 19) -73167 NM_001184990 4717 Hs.84549 NM_002494 ENSG00000109390 NDUFC1 KFYI NADH:ubiquinone oxidoreductase subunit C1 protein-coding 224.5-3 chr1 247765608 247766014 + 0.75 NA Intergenic L1ME2|LINE|L1 -7405 NM_012353 26188 Hs.381306 NM_012353 ENSG00000221888 OR1C1 HSTPCR27|OR1-42|OR1.5.10|ORL211|TPCR27 olfactory receptor family 1 subfamily C member 1 protein-coding 210.75-15 chr14 32306357 32306893 + 0.75 NA Intergenic L3|LINE|CR1 -22673 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 169.25-47 chr5 15699364 15699824 + 0.75 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -84592 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 171.5-26 chr13 83849031 83849386 + 0.75 NA Intergenic Intergenic 33185 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 269-14 chr9 76046877 76047413 + 0.75 NA intron (NR_120409, intron 5 of 19) AluY|SINE|Alu 156472 NM_006200 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 269-13 chr8 133420302 133420806 + 0.75 NA Intergenic Intergenic -123250 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 207.25-55 chr9 29995929 29996251 + 0.75 NA Intergenic Intergenic 412364 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 214.5-12 chr14 80292297 80292776 + 0.75 NA intron (NR_038355, intron 2 of 8) intron (NR_038355, intron 2 of 8) -61479 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 228.25-12 chr18 5512951 5513515 + 0.75 NA intron (NM_001330557, intron 1 of 21) MLT1I|LTR|ERVL-MaLR 27323 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 273.5-14 chr8 120169039 120169565 + 0.75 NA intron (NM_021110, intron 5 of 47) intron (NM_021110, intron 5 of 47) 44200 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 177.5-44 chr5 10462830 10463113 + 0.75 NA intron (NM_001201466, intron 5 of 5) intron (NM_001201466, intron 5 of 5) -15066 NR_106747 102465138 NR_106747 ENSG00000277073 MIR6131 hsa-mir-6131 microRNA 6131 ncRNA 278.75-2 chr11 120434972 120435465 + 0.75 NA intron (NM_015313, intron 11 of 40) L1MC5a|LINE|L1 49891 NM_001301084 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 247.75-15 chr2 181699983 181700451 + 0.75 NA Intergenic L2b|LINE|L2 -19552 NM_002500 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 219.5-7 chr12 17739579 17739988 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR 66484 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 260.25-13 chr21 18307230 18307910 + 0.75 NA intron (NM_002772, intron 18 of 24) L2c|LINE|L2 61695 NM_001204174 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 173-85 chr8 86198969 86199235 + 0.75 NA Intergenic Intergenic 31279 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 209-49 chr9 86232322 86232706 + 0.75 NA intron (NM_001276366, intron 1 of 3) intron (NM_001276366, intron 1 of 3) 23519 NM_001276368 389766 Hs.632073 NM_001010907 ENSG00000187753 C9orf153 bA507D14.1 chromosome 9 open reading frame 153 protein-coding 267.5-18 chr5 81572166 81572806 + 0.75 NA intron (NM_012446, intron 4 of 16) intron (NM_012446, intron 4 of 16) -178352 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 169.5-72 chr4 161554651 161554918 + 0.75 NA intron (NM_001128428, intron 8 of 14) intron (NM_001128428, intron 8 of 14) -467949 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 166.75-55 chr3 110226018 110226306 + 0.75 NA Intergenic Intergenic 623334 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 167-12 chr11 40693054 40693453 + 0.75 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -400123 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 180.75-30 chr2 14453855 14454256 + 0.75 NA Intergenic MLT1A1|LTR|ERVL-MaLR -53097 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 173.5-34 chr2 136412863 136413249 + 0.75 NA Intergenic L1MC4|LINE|L1 -294901 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 151.75-26 chr14 50131632 50131996 + 0.75 NA intron (NM_006939, intron 19 of 22) HSMAR2|DNA|TcMar-Mariner -15242 NR_049739 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 169-29 chr18 71812707 71813125 + 0.75 NA Intergenic L1PA15-16|LINE|L1 -30690 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 194-33 chr4 34079036 34079497 + 0.75 NA Intergenic MamRTE1|LINE|RTE-BovB -39373 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 179.25-18 chr11 70812653 70812983 + 0.75 NA intron (NM_012309, intron 11 of 24) intron (NM_012309, intron 11 of 24) -49972 NR_073536 220070 Hs.326766 NM_145308 ENSG00000171671 SHANK2-AS3 C11orf76 SHANK2 antisense RNA 3 ncRNA 183.75-17 chr11 97760318 97760796 + 0.75 NA Intergenic Intergenic 1252132 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 183-52 chr8 29738249 29738591 + 0.75 NA intron (NR_026765, intron 1 of 3) intron (NR_026765, intron 1 of 3) 9689 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 235.5-8 chr12 38410647 38411011 + 0.75 NA Intergenic L2a|LINE|L2 94055 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 165-4 chr1 216843740 216844019 + 0.75 NA intron (NM_001243513, intron 1 of 7) intron (NM_001243513, intron 1 of 7) -38494 NM_001243514 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 194.5-50 chr5 136577216 136577721 + 0.75 NA Intergenic MER96|DNA|hAT-Tip100 -211992 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 146.25-10 chr10 23778894 23779164 + 0.75 NA intron (NM_001098500, intron 1 of 18) L1ME3C|LINE|L1 84302 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 145.75-51 chr2 56655263 56655611 + 0.75 NA Intergenic MLT1F2|LTR|ERVL-MaLR -469667 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 243.25-19 chr4 30702257 30702744 + 0.75 NA Intergenic MLT2B4|LTR|ERVL -17869 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 197.5-12 chr12 28498737 28499078 + 0.75 NA intron (NM_001352082, intron 13 of 13) L2a|LINE|L2 -308169 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 163.25-42 chr2 101074595 101074875 + 0.75 NA intron (NM_001102426, intron 2 of 19) L1MC5a|LINE|L1 72446 NM_000993 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 157.25-89 chr7 44579006 44579313 + 0.75 NA TTS (NM_001303060) TTS (NM_001303060) 3072 NM_001303062 222068 Hs.598832 NM_182547 ENSG00000158604 TMED4 ERS25|GMP25iso|HNLF|p24a3|p24alpha3 transmembrane p24 trafficking protein 4 protein-coding 148.5-59 chr22 28559346 28559715 + 0.75 NA intron (NM_001145418, intron 2 of 22) L2c|LINE|L2 99661 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 187.75-20 chr14 59055165 59055449 + 0.75 NA Intergenic Intergenic -133360 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 244.5-8 chr14 69028707 69029237 + 0.75 NA Intergenic L1MB7|LINE|L1 49290 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 158.75-13 chr12 8110284 8110495 + 0.75 NA Intergenic Intergenic -13243 NM_194450 50856 Hs.504657 NM_016184 ENSG00000111729 CLEC4A CD367|CLECSF6|DCIR|DDB27|HDCGC13P|LLIR C-type lectin domain family 4 member A protein-coding 150.75-6 chr10 31932918 31933208 + 0.75 NA Intergenic MER65C|LTR|ERV1 -4187 NM_001270695 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 216-31 chr8 76239239 76239818 + 0.75 NA Intergenic Intergenic -167126 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 283.25-9 chr7 91372874 91373405 + 0.75 NA Intergenic Intergenic 108706 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 149.5-20 chr13 45445914 45446336 + 0.75 NA Intergenic LTR8|LTR|ERV1 -18814 NM_031431 83548 Hs.507948 NM_031431 ENSG00000136152 COG3 SEC34 component of oligomeric golgi complex 3 protein-coding 222.5-47 chr7 5222132 5222595 + 0.75 NA intron (NM_016003, intron 6 of 11) intron (NM_016003, intron 6 of 11) 8094 NM_001033520 26100 Hs.122363 NM_015610 ENSG00000157954 WIPI2 ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2 WD repeat domain, phosphoinositide interacting 2 protein-coding 153-59 chr4 33631684 33632095 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR 408004 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 245.25-3 chr10 42364203 42364715 + 0.75 NA intron (NR_024380, intron 1 of 2) intron (NR_024380, intron 1 of 2) 3586 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 184.5-21 chr11 81427785 81428075 + 0.75 NA Intergenic LTR38A1|LTR|ERV1 462906 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 196.75-2 chr1 74345065 74345413 + 0.75 NA intron (NM_015978, intron 9 of 24) intron (NM_015978, intron 9 of 24) 109852 NM_015978 51086 Hs.480085 NM_015978 ENSG00000116783 TNNI3K CARK|CCDD TNNI3 interacting kinase protein-coding 166.5-29 chr16 17809194 17809430 + 0.75 NA Intergenic AluSz6|SINE|Alu -338352 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 275-4 chr13 85506664 85507312 + 0.75 NA intron (NR_046989, intron 1 of 3) L1M5|LINE|L1 143385 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 161-50 chr2 127344032 127344300 + 0.75 NA promoter-TSS (NM_006609) promoter-TSS (NM_006609) -937 NM_006609 10746 Hs.145605 NM_006609 ENSG00000169967 MAP3K2 MEKK2|MEKK2B mitogen-activated protein kinase kinase kinase 2 protein-coding 192-42 chr3 175249485 175249912 + 0.75 NA intron (NR_046713, intron 1 of 2) intron (NR_046713, intron 1 of 2) 21398 NR_046713 100874244 Hs.581176 NR_046713 NAALADL2-AS2 - NAALADL2 antisense RNA 2 ncRNA 259.75-19 chr8 140919116 140919620 + 0.75 NA intron (NM_001352700, intron 1 of 34) intron (NM_001352700, intron 1 of 34) 81636 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 220.25-45 chr8 144772340 144772874 + 0.75 NA 3' UTR (NM_001286770, exon 5 of 5) 3' UTR (NM_001286770, exon 5 of 5) 14738 NM_001286769 80778 Hs.631854 NM_030580 ENSG00000196378 ZNF34 KOX32 zinc finger protein 34 protein-coding 172.75-41 chr3 4552269 4552667 + 0.75 NA intron (NM_001168272, intron 4 of 60) MER21B|LTR|ERVL 59120 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 203-24 chr2 216666636 216667100 + 0.75 NA Intergenic Intergenic 7301 NM_001313990 3485 Hs.438102 NM_000597 ENSG00000115457 IGFBP2 IBP2|IGF-BP53 insulin like growth factor binding protein 2 protein-coding 158-21 chr14 68276326 68276752 + 0.75 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 352248 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 165-68 chr5 91596707 91597116 + 0.75 NA Intergenic THE1D|LTR|ERVL-MaLR -213594 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 248.25-8 chr2 25019177 25019774 + 0.75 NA intron (NR_034113, intron 2 of 2) L2c|LINE|L2 -22601 NM_014971 22979 Hs.4892 NM_014971 ENSG00000084710 EFR3B KIAA0953 EFR3 homolog B protein-coding 160.25-28 chr2 7917292 7917699 + 0.75 NA Intergenic Intergenic -17840 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 243.25-13 chr20 8879489 8880152 + 0.75 NA intron (NM_182734, intron 32 of 32) intron (NM_182734, intron 32 of 32) 48635 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 150-76 chr6 34463225 34463568 + 0.75 NA Intergenic MIRb|SINE|MIR -2680 NM_020804 29993 Hs.520087 NM_020804 ENSG00000124507 PACSIN1 SDPI protein kinase C and casein kinase substrate in neurons 1 protein-coding 230.5-24 chr4 43183279 43183672 + 0.75 NA Intergenic L1MC4a|LINE|L1 290209 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 200-13 chr11 99913225 99913626 + 0.75 NA intron (NM_001243270, intron 5 of 23) intron (NM_001243270, intron 5 of 23) 357280 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 163.25-56 chr4 157062835 157063114 + 0.75 NA Intergenic Intergenic -13151 NM_001166061 2743 Hs.32973 NM_000824 ENSG00000109738 GLRB HKPX2 glycine receptor beta protein-coding 207-37 chr4 123897462 123898038 + 0.75 NA intron (NR_027105, intron 4 of 5) intron (NR_027105, intron 4 of 5) 123486 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 181-4 chr1 238755377 238755875 + 0.75 NA Intergenic Intergenic -269609 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 246.25-32 chr5 130681990 130682460 + 0.75 NA Intergenic L1MA8|LINE|L1 483031 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 216.5-35 chr6 67054510 67055116 + 0.75 NA Intergenic L1MB7|LINE|L1 -1000538 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 230 chr10 19607594 19607989 + 0.75 NA exon (NM_001142308, exon 35 of 40) exon (NM_001142308, exon 35 of 40) 120759 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 186.75-70 chr5 52175984 52176247 + 0.75 NA Intergenic Intergenic 168084 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 249.75-20 chr7 123279315 123279994 + 0.75 NA Intergenic Intergenic -79683 NM_001324400 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 238.75-36 chr9 33109207 33109765 + 0.75 NA TTS (NR_162131) TTS (NR_162131) 794 NR_162131 113219452 NR_162131 MIR12117 - microRNA 12117 ncRNA 269.5 chr1 71646951 71647576 + 0.75 NA intron (NM_173808, intron 4 of 6) intron (NM_173808, intron 4 of 6) 189749 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 245.25-10 chr16 19532494 19532902 + 0.75 NA intron (NM_014711, intron 4 of 14) intron (NM_014711, intron 4 of 14) 8756 NM_001323570 9738 Hs.279912 NM_014711 ENSG00000103540 CCP110 CP110|Cep110 centriolar coiled-coil protein 110 protein-coding 237-19 chr8 62180367 62180773 + 0.75 NA Intergenic MamRep38|DNA|hAT -68284 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 295.5-7 chr3 132698395 132699028 + 0.75 NA intron (NR_037804, intron 12 of 44) L2a|LINE|L2 -23039 NR_152743 348808 Hs.586111 NR_002811 ENSG00000248724 NPHP3-AS1 NCRNA00119 NPHP3 antisense RNA 1 ncRNA 173-12 chr10 31104463 31104886 + 0.75 NA Intergenic Intergenic -72737 NM_001143770 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 222-12 chr2 39672799 39673398 + 0.75 NA intron (NM_152390, intron 1 of 3) intron (NM_152390, intron 1 of 3) 7181 NM_152390 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 159-76 chr6 147705320 147705703 + 0.75 NA Intergenic Intergenic 196821 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 235.25 chr1 51884707 51885201 + 0.75 NA Intergenic Intergenic -6017 NM_002525 4898 Hs.584782 NM_002525 ENSG00000078618 NRDC NRD1|hNRD1|hNRD2 nardilysin convertase protein-coding 175.25-58 chr6 65077003 65077468 + 0.75 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -224183 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 193.5-66 chr6 62109396 62110081 + 0.75 NA intron (NR_146874, intron 2 of 13) GA-rich|Low_complexity|Low_complexity 176487 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 233-34 chr7 87662586 87662998 + 0.75 NA intron (NM_001134406, intron 2 of 9) L1MA3|LINE|L1 34394 NM_001134405 154661 Hs.411488 NM_138290 ENSG00000105784 RUNDC3B RPIB9|RPIP9 RUN domain containing 3B protein-coding 271.75-5 chr11 72800415 72800881 + 0.75 NA Intergenic AluJr|SINE|Alu -6943 NM_006645 10809 Hs.188606 NM_006645 ENSG00000214530 STARD10 CGI-52|NY-CO-28|PCTP2|SDCCAG28 StAR related lipid transfer domain containing 10 protein-coding 173.75-69 chr8 111110480 111110779 + 0.75 NA intron (NR_125418, intron 3 of 3) intron (NR_125418, intron 3 of 3) -83196 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 277.5-13 chr3 80073978 80074560 + 0.75 NA Intergenic Intergenic -306271 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 208.25-23 chr18 3181363 3181862 + 0.75 NA intron (NM_019856, intron 5 of 36) intron (NM_019856, intron 5 of 36) 38356 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 200.75-36 chr4 32204670 32205195 + 0.75 NA Intergenic Intergenic -146106 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 174.5-23 chr14 34263723 34264240 + 0.75 NA Intergenic Intergenic 198259 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 149.25-20 chr12 58197377 58197694 + 0.75 NA Intergenic Intergenic 109643 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 198.5 chr1 43409510 43409918 + 0.75 NA intron (NM_015284, intron 4 of 70) L1M1|LINE|L1 19815 NM_001365999 23334 Hs.643560 NM_015284 ENSG00000198198 SZT2 C1orf84|EIEE18|KIAA0467|SZT2A|SZT2B SZT2 subunit of KICSTOR complex protein-coding 180.5-2 chr1 158569605 158569880 + 0.75 NA Intergenic MIR|SINE|MIR -6138 NM_001160325 128366 Hs.723122 NM_001160325 ENSG00000186440 OR6P1 - olfactory receptor family 6 subfamily P member 1 protein-coding 209.5-52 chr8 124315935 124316477 + 0.75 NA intron (NM_194291, intron 6 of 6) intron (NM_194291, intron 6 of 6) 56493 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 174-12 chr11 4782628 4783018 + 0.75 NA Intergenic THE1B-int|LTR|ERVL-MaLR -12885 NM_001004752 256892 NM_001004752 ENSG00000280021 OR51F1 OR11-21|OR51F1P olfactory receptor family 51 subfamily F member 1 (gene/pseudogene) protein-coding 198.5-22 chr15 60858930 60859305 + 0.75 NA intron (NM_134261, intron 1 of 10) L2c|LINE|L2 177548 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 185-74 chrX 55541632 55541902 + 0.75 NA Intergenic L1M4|LINE|L1 -52569 NM_201286 158880 Hs.40061 NM_201286 ENSG00000247746 USP51 - ubiquitin specific peptidase 51 protein-coding 183.5-36 chr2 228316245 228316580 + 0.75 NA Intergenic Intergenic -134725 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 192-55 chr8 138697430 138697734 + 0.75 NA intron (NM_152888, intron 32 of 64) intron (NM_152888, intron 32 of 64) -199852 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 181.75-6 chr1 174564593 174564897 + 0.75 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) 116781 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 188.75-10 chr11 50568189 50568504 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 159199 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 184.75-51 chr3 186651468 186651854 + 0.75 NA intron (NM_001308079, intron 4 of 4) intron (NM_001308079, intron 4 of 4) 11262 NM_014375 26998 Hs.81073 NM_014375 ENSG00000090512 FETUB 16G2|Gugu|IRL685 fetuin B protein-coding 200.75-46 chr6 126522479 126522976 + 0.75 NA Intergenic Intergenic 38096 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 169.5-3 chr1 67729472 67729982 + 0.75 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 44526 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 158.5-37 chr18 64753566 64753969 + 0.75 NA Intergenic Intergenic -493712 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 199.75-45 chr5 82828887 82829285 + 0.75 NA Intergenic Intergenic -11069 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 229.75-22 chr3 190839116 190839451 + 0.75 NA Intergenic L1PREC2|LINE|L1 23411 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 254-19 chrX 129410221 129410838 + 0.75 NA Intergenic L1MB8|LINE|L1 112961 NM_001282874 6594 Hs.152292 NM_003069 ENSG00000102038 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 291.5-6 chr2 123419562 123420377 + 0.75 NA Intergenic Intergenic -346488 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 180-47 chr4 38332940 38333349 + 0.75 NA Intergenic Intergenic -33770 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 242-13 chr2 56478709 56479323 + 0.75 NA Intergenic L1M4b|LINE|L1 -293246 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 242.25-5 chr13 56127458 56127837 + 0.75 NA Intergenic Intergenic 953193 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 301.5-14 chr6 62236669 62237254 + 0.75 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 49264 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 177.25-65 chr6 121213443 121213896 + 0.75 NA intron (NR_104452, intron 22 of 35) L1PREC2|LINE|L1 120811 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 277.75-20 chr8 116274354 116274732 + 0.75 NA intron (NR_046215, intron 1 of 13) L1ME3Cz|LINE|L1 50516 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 173.25-24 chr14 72151080 72151345 + 0.75 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 217685 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 160.5-98 chr5 154360582 154360911 + 0.75 NA intron (NM_198321, intron 4 of 11) L1ME3G|LINE|L1 13640 NR_031626 100302181 NR_031626 ENSG00000221430 MIR1294 MIRN1294|hsa-mir-1294|mir-1294 microRNA 1294 ncRNA 220-7 chr16 62880795 62881349 + 0.75 NA Intergenic Intergenic -844634 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 237.75-10 chr17 75161716 75162280 + 0.75 NA Intergenic AluJo|SINE|Alu -7315 NR_109933 51155 Hs.532803 NM_016185 ENSG00000189159 JPT1 ARM2|HN1|HN1A Jupiter microtubule associated homolog 1 protein-coding 255-8 chr2 155996200 155996696 + 0.75 NA Intergenic Intergenic 258483 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 169.75-19 chr11 12618529 12618987 + 0.75 NA Intergenic Intergenic -55663 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 236-25 chr5 22938435 22939086 + 0.75 NA Intergenic (ATT)n|Simple_repeat|Simple_repeat -85416 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 311.25-11 chr8 58264693 58265218 + 0.75 NA intron (NR_105005, intron 2 of 7) Tigger7|DNA|TcMar-Tigger 7146 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 173.25-41 chr2 235231116 235231607 + 0.75 NA Intergenic Intergenic 203626 NM_001371306 213.75-11 chr2 21739068 21739573 + 0.75 NA Intergenic MIR|SINE|MIR -28668 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 194-21 chr15 37809999 37810530 + 0.75 NA Intergenic Intergenic -124343 NM_152453 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 168.25-9 chr11 37425375 37425789 + 0.75 NA Intergenic L1MA2|LINE|L1 -513019 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 219.25-5 chr10 53310600 53311063 + 0.75 NA Intergenic Intergenic -539131 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 178-54 chr5 52702996 52703239 + 0.75 NA Intergenic Intergenic -84799 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 205.75-8 chr1 186794231 186794728 + 0.75 NA Intergenic L1MB7|LINE|L1 -34421 NM_024420 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 195.75-13 chr11 32163221 32163687 + 0.75 NA Intergenic Intergenic -19542 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 267-8 chr5 115597985 115598519 + 0.75 NA intron (NM_001164469, intron 3 of 3) intron (NM_001164469, intron 3 of 3) -3903 NR_109875 101927100 Hs.745340 NR_109874 LOC101927100 - uncharacterized LOC101927100 ncRNA 178-36 chr2 193405553 193406065 + 0.75 NA Intergenic Intergenic 655964 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 222-18 chr4 110891644 110892111 + 0.75 NA Intergenic L1PA8|LINE|L1 -31230 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 274-7 chr3 88106835 88107461 + 0.75 NA intron (NM_001350135, intron 2 of 6) intron (NM_001350135, intron 2 of 6) 42718 NM_001195308 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 244.5-11 chr14 83151970 83152373 + 0.75 NA Intergenic Intergenic 509539 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 155.75-94 chr6 161693375 161693585 + 0.75 NA intron (NM_004562, intron 7 of 11) intron (NM_004562, intron 7 of 11) 222503 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 266.25-17 chr6 135324199 135324604 + 0.75 NA intron (NM_017651, intron 23 of 27) intron (NM_017651, intron 23 of 27) 85241 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 183.5-2 chr1 97996438 97996958 + 0.75 NA intron (NR_046105, intron 3 of 4) intron (NR_046105, intron 3 of 4) 48653 NR_039604 100616452 NR_039604 ENSG00000284247 MIR2682 mir-2682 microRNA 2682 ncRNA 146.25-107 chrX 69938014 69938334 + 0.75 NA intron (NM_001005609, intron 1 of 7) intron (NM_001005609, intron 1 of 7) -84683 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 202-27 chr2 225372855 225373212 + 0.75 NA Intergenic Intergenic -26677 NM_001371273 305-7 chr5 155921499 155922212 + 0.75 NA Intergenic Intergenic -404902 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 221.5-37 chr4 88806763 88807251 + 0.75 NA intron (NM_014883, intron 7 of 23) intron (NM_014883, intron 7 of 23) 16354 NM_001015045 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 223.75-6 chr14 48664065 48664631 + 0.75 NA Intergenic Intergenic -869334 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 182-52 chr7 53461197 53461522 + 0.75 NA Intergenic L1M5|LINE|L1 350572 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 149.5-26 chr14 64347394 64347774 + 0.75 NA promoter-TSS (NR_033777) promoter-TSS (NR_033777) 27 NR_033777 441687 Hs.685242 NR_033777 TEX21P - testis expressed 21, pseudogene pseudo 224-11 chr14 66943753 66944169 + 0.75 NA intron (NM_020806, intron 8 of 22) MER61-int|LTR|ERV1 -245479 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 208-19 chr2 194345943 194346381 + 0.75 NA intron (NR_110222, intron 1 of 5) intron (NR_110222, intron 1 of 5) 1893 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 157.75-105 chr7 112360744 112361112 + 0.75 NA Intergenic Intergenic -62216 NM_001007245 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 199-9 chr14 71400233 71400662 + 0.75 NA intron (NM_001354285, intron 2 of 24) intron (NM_001354285, intron 2 of 24) 2110 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 241.25-17 chr4 36705814 36706396 + 0.75 NA Intergenic MIR|SINE|MIR -64205 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 167.75-87 chr7 107821157 107821476 + 0.75 NA Intergenic Intergenic -18083 NM_000111 1811 Hs.1650 NM_000111 ENSG00000091138 SLC26A3 CLD|DRA solute carrier family 26 member 3 protein-coding 223.5-25 chr20 45039951 45040348 + 0.75 NA intron (NM_006282, intron 10 of 10) L1MC5|LINE|L1 60978 NM_001322799 3787 Hs.117780 NM_002251 ENSG00000124134 KCNS1 Kv9.1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding 225-7 chr17 61772382 61772697 + 0.75 NA intron (NM_032043, intron 14 of 19) AluSp|SINE|Alu 91020 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 203.5-6 chr1 175222542 175222877 + 0.75 NA Intergenic LTR88b|LTR|Gypsy? -29722 NM_001319230 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 213.5-36 chr5 97959333 97959685 + 0.75 NA Intergenic L1M5|LINE|L1 118751 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 245-22 chr9 90148599 90149107 + 0.75 NA Intergenic L1MC1|LINE|L1 -107354 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 239-7 chr14 53568285 53568739 + 0.75 NA Intergenic Intergenic 379972 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 329.75-6 chr3 76141493 76142158 + 0.75 NA Intergenic Intergenic -356276 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 197.75-62 chr6 118731820 118732387 + 0.75 NA Intergenic Tigger3a|DNA|TcMar-Tigger -22028 NM_001178035 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 182.5-60 chr5 120863540 120863947 + 0.75 NA Intergenic Intergenic 332279 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 172.25-76 chrUn_KI270465v1 1346 1750 + 0.75 NA NA ALR/Alpha|Satellite|centr NA NA 265.5-8 chr16 74980066 74980574 + 0.75 NA intron (NM_001324172, intron 1 of 13) intron (NM_001324172, intron 1 of 13) 4803 NM_030581 79726 Hs.280951 NM_030581 ENSG00000103091 WDR59 CDW12|FP977|p90-120 WD repeat domain 59 protein-coding 261-11 chr2 68261508 68261971 + 0.75 NA Intergenic Intergenic -9207 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 202-43 chr6 42787084 42787355 + 0.75 NA intron (NR_134654, intron 1 of 1) L2c|LINE|L2 3723 NR_134654 401261 Hs.656652 NM_001004322 LOC401261 - uncharacterized LOC401261 ncRNA 284.25-4 chr3 57403475 57404169 + 0.75 NA intron (NM_001366028, intron 42 of 73) intron (NM_001366028, intron 42 of 73) -111137 NM_001142733 142686 Hs.665154 NM_130387 ENSG00000239388 ASB14 - ankyrin repeat and SOCS box containing 14 protein-coding 278.5-2 chr1 156202009 156202582 + 0.75 NA intron (NM_014655, intron 2 of 3) L2b|LINE|L2 8191 NM_014655 9673 Hs.532375 NM_014655 ENSG00000160785 SLC25A44 - solute carrier family 25 member 44 protein-coding 203.5-56 chr5 42761737 42762212 + 0.75 NA intron (NM_001134848, intron 2 of 8) Tigger3a|DNA|TcMar-Tigger 5156 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 164-48 chr3 74790652 74790966 + 0.75 NA Intergenic Intergenic -269669 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 227.5-25 chr7 4281718 4282108 + 0.75 NA Intergenic MER49|LTR|ERV1 -147076 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 204-24 chr2 142988634 142989221 + 0.75 NA intron (NM_001032998, intron 11 of 11) intron (NM_001032998, intron 11 of 11) 111263 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 201-27 chr4 167368229 167368657 + 0.75 NA Intergenic Intergenic -133853 NM_001204354 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 221 chr1 111116174 111116631 + 0.75 NA TTS (NM_001349882) TTS (NM_001349882) -22981 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 165-26 chr14 54186038 54186311 + 0.75 NA Intergenic Intergenic -210694 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 236.75-26 chr6 54994616 54995156 + 0.75 NA Intergenic L1PA15-16|LINE|L1 -111574 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 168-29 chr2 6732659 6733011 + 0.75 NA intron (NR_038369, intron 2 of 5) intron (NR_038369, intron 2 of 5) 37476 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 207-34 chr4 84924930 84925385 + 0.75 NA intron (NM_014991, intron 2 of 67) intron (NM_014991, intron 2 of 67) -40459 NR_152774 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 191.75-30 chr2 61365475 61365918 + 0.75 NA intron (NM_014709, intron 10 of 79) HAL1b|LINE|L1 51681 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 343.75-7 chr4 144444636 144445543 + 0.75 NA Intergenic Intergenic 200930 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 207-28 chr3 195364966 195365439 + 0.75 NA intron (NM_012287, intron 4 of 22) L1MA3|LINE|L1 77818 NM_012287 23527 Hs.593373 NM_012287 ENSG00000114331 ACAP2 CENTB2|CNT-B2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 protein-coding 231.25-31 chr5 39415662 39416168 + 0.75 NA intron (NM_001343, intron 1 of 14) intron (NM_001343, intron 1 of 14) 9065 NM_001343 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 187.25-30 chr18 9175862 9176176 + 0.75 NA intron (NM_001204056, intron 1 of 11) intron (NM_001204056, intron 1 of 11) 38456 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 250.25-17 chr2 197420008 197420741 + 0.75 NA 3' UTR (NM_001308824, exon 4 of 4) 3' UTR (NM_001308824, exon 4 of 4) 14719 NM_012433 23451 Hs.632554 NM_012433 ENSG00000115524 SF3B1 Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155 splicing factor 3b subunit 1 protein-coding 187.75-42 chr20 45411334 45411859 + 0.75 NA TTS (NM_018478) TTS (NM_018478) 3607 NM_001048225 55861 Hs.730643 NM_018478 ENSG00000244274 DBNDD2 C20orf35|CK1BP|HSMNP1 dysbindin domain containing 2 protein-coding 241.75-8 chr15 86213565 86214163 + 0.75 NA intron (NM_152336, intron 5 of 24) L1MB4|LINE|L1 -97147 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 199.25-38 chr20 57762132 57762656 + 0.75 NA Intergenic LTR78|LTR|ERV1 -50858 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 184.75-25 chr14 33049341 33049746 + 0.75 NA intron (NM_001165893, intron 1 of 10) THE1B|LTR|ERVL-MaLR 110664 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 181.5-62 chr6 139231839 139232258 + 0.75 NA Intergenic THE1D|LTR|ERVL-MaLR 59950 NM_153235 167838 Hs.535820 NM_153235 ENSG00000164440 TXLNB C6orf198|LST001|MDP77|dJ522B19.2 taxilin beta protein-coding 145.75-27 chr13 33065748 33066046 + 0.75 NA 3' UTR (NM_004795, exon 5 of 5) 3' UTR (NM_004795, exon 5 of 5) 49474 NM_004795 9365 Hs.524953 NM_004795 ENSG00000133116 KL HFTC3 klotho protein-coding 213.25-14 chr16 11996454 11996919 + 0.75 NA intron (NM_032167, intron 1 of 20) intron (NM_032167, intron 1 of 20) 19952 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 174-62 chr7 14573665 14574166 + 0.75 NA intron (NM_001350717, intron 19 of 24) intron (NM_001350717, intron 19 of 24) 267535 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 183.75-50 chr2 161199292 161199636 + 0.75 NA intron (NM_001199135, intron 2 of 7) intron (NM_001199135, intron 2 of 7) 39036 NM_001199135 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 188.75-44 chr3 186152190 186152582 + 0.75 NA intron (NM_001346, intron 24 of 24) intron (NM_001346, intron 24 of 24) -43297 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 195-32 chr3 95237409 95237904 + 0.75 NA Intergenic L1MB1|LINE|L1 299393 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 176-17 chr14 74756875 74757327 + 0.75 NA Intergenic L1ME3A|LINE|L1 -6215 NM_019589 56252 Hs.531111 NM_019589 ENSG00000119596 YLPM1 C14orf170|PPP1R169|ZAP113|ZAP3 YLP motif containing 1 protein-coding 203.75-48 chr8 84030949 84031370 + 0.75 NA Intergenic Intergenic -151628 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 196.25-13 chr13 25870228 25870672 + 0.75 NA intron (NM_016529, intron 33 of 36) LTR1A2|LTR|ERV1 180610 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 166.75-35 chr19 747069 747514 + 0.75 NA 3' UTR (NM_001040134, exon 8 of 8) 3' UTR (NM_001040134, exon 8 of 8) -3821 NM_173481 126353 Hs.439180 NM_173481 ENSG00000099812 MISP C19orf21|MISP1 mitotic spindle positioning protein-coding 251.5 chr1 95845817 95846513 + 0.75 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -145903 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 204.5-10 chr11 29531017 29531383 + 0.75 NA Intergenic Intergenic -63213 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 265-7 chr20 18684458 18684886 + 0.75 NA intron (NR_109955, intron 2 of 3) L1MCb|LINE|L1 14036 NR_109955 101929526 Hs.639402 NR_109955 ENSG00000233993 LOC101929526 - uncharacterized LOC101929526 ncRNA 173-82 chr8 35754450 35754830 + 0.75 NA intron (NM_001322818, intron 13 of 16) intron (NM_001322818, intron 13 of 16) -44320 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 148.75-86 chr6 48661283 48661567 + 0.75 NA Intergenic Intergenic -592736 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 150.5-78 chr3 98150994 98151278 + 0.75 NA TTS (NM_001005514) TTS (NM_001005514) 1750 NM_001005514 403273 Hs.554714 NM_001005514 ENSG00000236032 OR5H14 - olfactory receptor family 5 subfamily H member 14 protein-coding 160.75-29 chr12 117549402 117549650 + 0.75 NA intron (NM_173598, intron 9 of 19) L2b|LINE|L2 -187724 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 181.5-75 chr9 99026802 99027261 + 0.75 NA intron (NM_001855, intron 16 of 41) intron (NM_001855, intron 16 of 41) -78082 NM_001130916 7046 Hs.494622 NM_004612 ENSG00000106799 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I transforming growth factor beta receptor 1 protein-coding 215.75-45 chrX 87271575 87272004 + 0.75 NA Intergenic L1MA2|LINE|L1 -246013 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 178.5-44 chr21 20026263 20026660 + 0.75 NA Intergenic Intergenic -126706 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 146.25-82 chr6 126641817 126642014 + 0.75 NA Intergenic Intergenic 157284 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 236.75-27 chr7 55964747 55965119 + 0.75 NA intron (NM_001202469, intron 1 of 7) CpG 348 NM_001202469 2631 Hs.591069 NM_001483 ENSG00000146729 NIPSNAP2 GBAS nipsnap homolog 2 protein-coding 248.5-13 chr3 71124813 71125513 + 0.75 NA intron (NR_146142, intron 6 of 19) intron (NR_146142, intron 6 of 19) 5423 NM_001349337 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 248-10 chr7 43099989 43100518 + 0.75 NA Intergenic Intergenic -12394 NM_015052 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 209.25-50 chr8 119198740 119199102 + 0.75 NA Intergenic AluJr|SINE|Alu -9442 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 210-30 chr2 238342778 238343259 + 0.75 NA intron (NM_015650, intron 8 of 16) intron (NM_015650, intron 8 of 16) 22474 NM_001139490 26146 Hs.631898 NM_015650 ENSG00000204104 TRAF3IP1 IFT54|MIP-T3|MIPT3|SLSN9 TRAF3 interacting protein 1 protein-coding 159.75-57 chr22 32569086 32569408 + 0.75 NA intron (NM_003490, intron 7 of 13) intron (NM_003490, intron 7 of 13) 94010 NM_001257990 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 228.25-18 chr21 24844327 24844931 + 0.75 NA intron (NR_046198, intron 1 of 3) MIR|SINE|MIR 4079 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 163.5-56 chr2 95308300 95308744 + 0.75 NA intron (NM_013434, intron 1 of 8) intron (NM_013434, intron 1 of 8) 11175 NM_013434 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 174.5-22 chr12 129398474 129398748 + 0.75 NA intron (NM_133448, intron 3 of 8) intron (NM_133448, intron 3 of 8) 190010 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 210.25-13 chr16 84229026 84229487 + 0.75 NA intron (NM_172347, intron 2 of 2) AluSz6|SINE|Alu 10494 NM_172347 93107 Hs.335877 NM_133490 ENSG00000168418 KCNG4 KV6.3|KV6.4 potassium voltage-gated channel modifier subfamily G member 4 protein-coding 335.75-7 chr8 69896579 69897149 + 0.75 NA Intergenic AluY|SINE|Alu -61886 NM_030958 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 165.5-67 chr4 93485482 93485852 + 0.75 NA intron (NM_001286838, intron 10 of 14) L1ME3B|LINE|L1 -343086 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 189.25-42 chr5 118414491 118414916 + 0.75 NA intron (NR_104610, intron 9 of 9) L1MA9|LINE|L1 132129 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 175.25-73 chr8 129209721 129210164 + 0.75 NA Intergenic MER91C|DNA|hAT-Tip100 31298 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 175.75-13 chr13 30983405 30983712 + 0.75 NA Intergenic MER87B|LTR|ERV1 50902 NM_001353389 122046 Hs.124463 NM_152325 ENSG00000175664 TEX26 C13orf26 testis expressed 26 protein-coding 185.5-22 chr13 23846607 23846996 + 0.75 NA intron (NM_005932, intron 10 of 18) intron (NM_005932, intron 10 of 18) -42067 NM_001014442 542767 Hs.642624 NM_001014442 PCOTH C1QTNF9B-AS1 Pro-X-Gly collagen triple helix like repeat containing protein-coding 277-11 chr6 55898093 55898513 + 0.75 NA Intergenic L2c|LINE|L2 -22713 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 209.5-8 chr12 85640461 85640828 + 0.75 NA Intergenic Intergenic 195765 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 159.25-69 chr7 37553072 37553443 + 0.75 NA Intergenic Intergenic -103931 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 304.75-5 chr7 82192833 82193596 + 0.75 NA intron (NM_000722, intron 3 of 38) intron (NM_000722, intron 3 of 38) 184037 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 201-34 chr6 38546329 38546842 + 0.75 NA intron (NM_001172418, intron 5 of 10) Tigger1|DNA|TcMar-Tigger 49482 NM_152733 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 217-12 chr18 9663601 9664284 + 0.75 NA Intergenic Intergenic -44359 NM_006868 11031 Hs.99528 NM_006868 ENSG00000168461 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 173.25-58 chr4 127756193 127756551 + 0.75 NA intron (NM_001318467, intron 2 of 6) L1MA7|LINE|L1 -25424 NM_001317381 22824 Hs.135554 NM_014278 ENSG00000164070 HSPA4L APG-1|HSPH3|Osp94 heat shock protein family A (Hsp70) member 4 like protein-coding 214.25-19 chr2 168581878 168582186 + 0.75 NA promoter-TSS (NR_039933) promoter-TSS (NR_039933) -911 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 260-6 chr22 35599332 35599933 + 0.75 NA Intergenic MLT2D|LTR|ERVL 17697 NM_005368 4151 Hs.517586 NM_005368 ENSG00000198125 MB PVALB|myoglobgin myoglobin protein-coding 147.25-89 chr6 110443874 110444084 + 0.75 NA intron (NM_033125, intron 3 of 7) L1MB2|LINE|L1 -28404 NM_001368170 8528 Hs.591348 NM_003649 ENSG00000203797 DDO DASOX|DDO-1|DDO-2 D-aspartate oxidase protein-coding 153.25-83 chr4 55913885 55914359 + 0.75 NA Intergenic Intergenic -34823 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 171-38 chr2 235137551 235138002 + 0.75 NA Intergenic Intergenic 110041 NM_001371306 168.75-94 chr7 67467152 67467452 + 0.75 NA Intergenic AluSz6|SINE|Alu 131326 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 344.5-8 chr8 140697479 140698222 + 0.75 NA intron (NR_148037, intron 28 of 34) L1M4b|LINE|L1 20719 NM_001352751 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 166.25-52 chr5 21872635 21873009 + 0.75 NA intron (NM_004061, intron 6 of 14) (ATCT)n|Simple_repeat|Simple_repeat -11632 NR_132787 106635539 NR_132787 SNORA105A - small nucleolar RNA, H/ACA box 105A snoRNA 163-27 chr14 55156977 55157383 + 0.75 NA intron (NM_001146015, intron 14 of 19) HAL1|LINE|L1 20197 NR_003225 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 189.75-72 chr7 92619750 92620286 + 0.75 NA intron (NM_001259, intron 6 of 7) intron (NM_001259, intron 6 of 7) -29628 NR_109929 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 155.5-29 chr13 92456097 92456460 + 0.75 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -33885 NR_049840 100847092 NR_049840 ENSG00000263741 MIR548AS - microRNA 548as ncRNA 203.25-6 chr11 44048780 44049297 + 0.75 NA intron (NM_001031854, intron 1 of 13) L2b|LINE|L2 1057 NM_001031854 390110 Hs.558851 NM_001031854 ENSG00000205126 ACCSL - 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like protein-coding 152.25-92 chr7 81597269 81597619 + 0.75 NA intron (NR_126025, intron 5 of 10) intron (NR_126025, intron 5 of 10) 28772 NR_126026 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 332-4 chr5 98221669 98222429 + 0.75 NA Intergenic Intergenic -60810 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 154.5-72 chr4 66355829 66356223 + 0.75 NA Intergenic UCON12A|Unknown|Unknown 79202 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 185-54 chr4 82338389 82338906 + 0.75 NA Intergenic LTR12|LTR|ERV1 35344 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 180.75-3 chr1 32590131 32590606 + 0.75 NA intron (NR_111980, intron 2 of 3) L1MEd|LINE|L1 50941 NR_111980 653121 Hs.546479 NM_144621 ENSG00000160062 ZBTB8A BOZF1|ZBTB8|ZNF916A zinc finger and BTB domain containing 8A protein-coding 178 chr1 60830254 60830633 + 0.75 NA Intergenic Intergenic -4859 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 198.5-32 chr2 231108445 231109017 + 0.75 NA exon (NM_001320758, exon 4 of 4) exon (NM_001320758, exon 4 of 4) 16311 NM_000867 3357 Hs.421649 NM_000867 ENSG00000135914 HTR2B 5-HT(2B)|5-HT-2B|5-HT2B 5-hydroxytryptamine receptor 2B protein-coding 187.5-29 chr19 45463528 45464095 + 0.75 NA Intergenic Intergenic -4185 NM_001114171 2354 Hs.590958 NM_006732 ENSG00000125740 FOSB AP-1|G0S3|GOS3|GOSB FosB proto-oncogene, AP-1 transcription factor subunit protein-coding 254.25-11 chr3 76568641 76569055 + 0.75 NA Intergenic Intergenic -471251 NM_002942 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 174.5-31 chr16 50182524 50182994 + 0.75 NA intron (NM_001365324, intron 1 of 11) intron (NM_001365324, intron 1 of 11) 29278 NM_001365324 64282 Hs.514342 NM_022447 ENSG00000121274 TENT4B PAPD5|TRF4-2|TUT3 terminal nucleotidyltransferase 4B protein-coding 154.75-27 chr15 83009056 83009298 + 0.75 NA intron (NR_027650, intron 2 of 3) intron (NR_027650, intron 2 of 3) 2462 NR_027649 123207 Hs.352541 NM_144597 ENSG00000169609 C15orf40 - chromosome 15 open reading frame 40 protein-coding 176.75-62 chr4 58126409 58126825 + 0.75 NA Intergenic LTR44|LTR|ERV1 409711 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 236-32 chr7 119949692 119950215 + 0.75 NA Intergenic Intergenic -42578 NR_131962 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 174-53 chr5 63800954 63801331 + 0.75 NA Intergenic LTR48|LTR|ERV1 161150 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 228.5-16 chr11 113780468 113780865 + 0.75 NA TTS (NM_001101389) TTS (NM_001101389) 870 NM_001101389 644672 Hs.705360 NM_001101389 ENSG00000228607 CLDN25 - claudin 25 protein-coding 157.5-44 chr2 9874044 9874321 + 0.75 NA intron (NM_001318977, intron 6 of 13) intron (NM_001318977, intron 6 of 13) 30708 NM_005680 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 171.75-32 chr16 60857282 60857766 + 0.75 NA Intergenic Intergenic 198242 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 216.75-17 chr2 111658854 111659251 + 0.75 NA Intergenic Intergenic 112082 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 223.75-2 chr1 102412362 102412985 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -415439 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 205.5-36 chr5 36698542 36698846 + 0.75 NA Intergenic Intergenic 92088 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 189-67 chrX 99351264 99351588 + 0.75 NA Intergenic L1PA17|LINE|L1 1058847 NM_001105243 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 165.5-104 chr9 124368969 124369217 + 0.75 NA intron (NM_002799, intron 6 of 7) intron (NM_002799, intron 6 of 7) 15620 NR_027406 100129034 Hs.654980 NR_027406 LOC100129034 - uncharacterized LOC100129034 ncRNA 147-50 chr2 111642734 111642996 + 0.75 NA Intergenic Intergenic 128269 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 158.5-56 chr20 54472878 54473326 + 0.75 NA Intergenic Intergenic -2491 NM_018431 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 244.75-14 chr20 62944187 62944767 + 0.75 NA intron (NM_017896, intron 4 of 4) intron (NM_017896, intron 4 of 4) 6330 NM_017896 54994 Hs.353013 NM_017896 ENSG00000101193 GID8 C20orf11|TWA1 GID complex subunit 8 homolog protein-coding 217.25-31 chr21 27350722 27351262 + 0.75 NA Intergenic Intergenic -371387 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 251.5-13 chr16 73570376 73570842 + 0.75 NA Intergenic Intergenic 183804 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 212.5-16 chr16 69869933 69870262 + 0.75 NA intron (NM_001270453, intron 3 of 20) MIR|SINE|MIR 31360 NM_001270453 11060 Hs.408458 NM_007014 ENSG00000198373 WWP2 AIP2|WWp2-like WW domain containing E3 ubiquitin protein ligase 2 protein-coding 148.25-58 chr3 56869841 56870114 + 0.75 NA intron (NM_001128615, intron 4 of 12) intron (NM_001128615, intron 4 of 12) 46459 NM_001289698 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 260.5-18 chr8 125668581 125669161 + 0.75 NA Intergenic Intergenic 236662 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 189.75-30 chr17 65966610 65967066 + 0.75 NA intron (NM_001353129, intron 17 of 26) intron (NM_001353129, intron 17 of 26) -140295 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 239.5-33 chr6 53003889 53004412 + 0.75 NA 3' UTR (NM_016513, exon 15 of 15) 3' UTR (NM_016513, exon 15 of 15) 8530 NR_001445 125050 NR_001445 ENSG00000202198 RN7SK 7SK RNA component of 7SK nuclear ribonucleoprotein snRNA 235.75-28 chr7 21801883 21802587 + 0.75 NA intron (NM_001277115, intron 62 of 81) L1MB7|LINE|L1 143664 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 214.5 chr1 20509367 20509756 + 0.75 NA Intergenic AluSz|SINE|Alu -1410 NM_024544 79594 Hs.10101 NM_024544 ENSG00000090432 MUL1 C1orf166|GIDE|MAPL|MULAN|RNF218 mitochondrial E3 ubiquitin protein ligase 1 protein-coding 162.5-16 chr11 38499902 38500391 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR 146210 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 255.5-29 chr4 107803847 107804278 + 0.75 NA Intergenic L2|LINE|L2 -20503 NM_001136258 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 210.25-21 chr2 142328088 142328438 + 0.75 NA Intergenic AluSx|SINE|Alu -196562 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 183.75-69 chr5 82819826 82820266 + 0.75 NA Intergenic Intergenic -20109 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 323.25-6 chr8 77623350 77624092 + 0.75 NA Intergenic Intergenic 173024 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 216-26 chr4 88350905 88351439 + 0.75 NA Intergenic MER34A|LTR|ERV1 -27567 NM_001165136 55008 Hs.529317 NM_017912 ENSG00000138642 HERC6 - HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 protein-coding 256.75-23 chr7 45331474 45331930 + 0.75 NA Intergenic L1ME1|LINE|L1 173911 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 150.75-69 chr4 135640999 135641227 + 0.75 NA Intergenic Intergenic 246980 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 172-42 chr2 158405957 158406396 + 0.75 NA intron (NM_138803, intron 1 of 13) intron (NM_138803, intron 1 of 13) 50577 NM_001301684 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 157.5-11 chr10 118087564 118087933 + 0.75 NA intron (NR_026940, intron 3 of 3) (TA)n|Simple_repeat|Simple_repeat -40807 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 218.5-24 chr3 116556948 116557270 + 0.75 NA intron (NR_046624, intron 1 of 1) intron (NR_046624, intron 1 of 1) 4636 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 147-17 chr11 59724794 59725060 + 0.75 NA Intergenic L1PB2|LINE|L1 -11082 NM_001005324 390201 Hs.589001 NM_001005324 ENSG00000172289 OR10V1 OR11-256 olfactory receptor family 10 subfamily V member 1 protein-coding 179.25-20 chr11 109175933 109176398 + 0.75 NA Intergenic AluSz|SINE|Alu -246025 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 158-13 chr11 103160238 103160547 + 0.75 NA intron (NM_001377, intron 28 of 88) L1M5|LINE|L1 50966 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 146-84 chr7 27430914 27431217 + 0.75 NA Intergenic Intergenic -183836 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 212.5-29 chr3 19129432 19130015 + 0.75 NA Intergenic MER4E|LTR|ERV1 -18787 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 166.5-31 chr16 64727753 64728169 + 0.75 NA Intergenic Intergenic 394102 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 237.75-5 chr11 38885616 38886248 + 0.75 NA Intergenic Intergenic 237074 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 185-56 chr4 146008936 146009249 + 0.75 NA Intergenic L1M2c|LINE|L1 -70269 NM_001306215 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 263.5-25 chr8 136920216 136920874 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR 389747 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 287.75-11 chr5 23603919 23604329 + 0.75 NA Intergenic Intergenic 96469 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 192.25-9 chr10 79289058 79289512 + 0.75 NA intron (NM_020338, intron 8 of 24) intron (NM_020338, intron 8 of 24) -58184 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 182.5-72 chr7 8079594 8079909 + 0.75 NA intron (NM_138426, intron 6 of 7) intron (NM_138426, intron 6 of 7) 110955 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 266.25-19 chr8 79686781 79687275 + 0.75 NA Intergenic L2c|LINE|L2 75911 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 169.75-73 chr8 123470365 123470738 + 0.75 NA Intergenic Intergenic 53777 NM_018024 55093 Hs.18029 NM_018024 ENSG00000156795 WDYHV1 C8orf32 WDYHV motif containing 1 protein-coding 192.25-14 chr12 107265595 107266036 + 0.75 NA Intergenic L1ME3A|LINE|L1 -52619 NM_001347943 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 198.75-17 chr13 69168484 69168944 + 0.75 NA Intergenic LTR1D1|LTR|ERV1 -53632 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 184-22 chr17 74399047 74399438 + 0.75 NA Intergenic L1ME1|LINE|L1 31736 NM_001331076 350383 Hs.574368 NM_181790 ENSG00000257008 GPR142 GPRg1b|PGR2 G protein-coupled receptor 142 protein-coding 151.25-97 chr8 125394828 125395238 + 0.75 NA Intergenic L1M4|LINE|L1 -35325 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 156.5-67 chr3 107667188 107667607 + 0.75 NA intron (NM_001276286, intron 3 of 16) intron (NM_001276286, intron 3 of 16) 144435 NM_020235 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 151-11 chr10 95236009 95236230 + 0.75 NA Intergenic Intergenic 41919 NM_207321 142827 Hs.134229 NM_207321 ENSG00000173124 ACSM6 C10orf129|bA310E22.3 acyl-CoA synthetase medium chain family member 6 protein-coding 185.5-72 chr8 92408516 92408975 + 0.75 NA Intergenic Intergenic 246749 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 189.75-73 chr7 152405038 152405572 + 0.75 NA intron (NM_170606, intron 1 of 58) AluSz6|SINE|Alu 30698 NM_170606 58508 Hs.647120 NM_021230 ENSG00000055609 KMT2C HALR|KLEFS2|MLL3 lysine methyltransferase 2C protein-coding 201.5-51 chr5 77802746 77803246 + 0.75 NA Intergenic L1MC1|LINE|L1 -26635 NM_004607 6902 Hs.291212 NM_004607 ENSG00000171530 TBCA - tubulin folding cofactor A protein-coding 177.75-20 chr16 27758295 27758605 + 0.75 NA intron (NM_015202, intron 18 of 27) L2a|LINE|L2 -39421 NR_147898 100128079 Hs.610277 NR_147898 LOC100128079 - uncharacterized LOC100128079 ncRNA 260.25-23 chr6 61902551 61903221 + 0.75 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 328756 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 169-23 chr17 48299089 48299499 + 0.75 NA intron (NR_131239, intron 2 of 2) intron (NR_131239, intron 2 of 2) 4947 NR_131239 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 175.25-52 chr5 76477620 76477913 + 0.75 NA intron (NM_006633, intron 2 of 35) Tigger3b|DNA|TcMar-Tigger -69643 NM_001285460 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 226-2 chr1 232254978 232255455 + 0.75 NA Intergenic L1M4|LINE|L1 260392 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 275-19 chr7 127235622 127236316 + 0.75 NA intron (NR_163850, intron 1 of 9) intron (NR_163850, intron 1 of 9) 7546 NR_028041 2918 Hs.449625 NM_000845 ENSG00000179603 GRM8 GLUR8|GPRC1H|MGLUR8|mGlu8 glutamate metabotropic receptor 8 protein-coding 150-78 chr6 131787255 131787561 + 0.75 NA Intergenic L1ME3G|LINE|L1 -4764 NR_039610 100616455 NR_039610 ENSG00000266807 MIR548H5 - microRNA 548h-5 ncRNA 150-77 chr6 55103380 55103667 + 0.75 NA Intergenic Intergenic -2937 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 190.5-47 chr5 15460560 15460942 + 0.75 NA Intergenic L1M3f|LINE|L1 -39429 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 196.75-49 chr6 71462238 71462666 + 0.75 NA Intergenic L1PA4|LINE|L1 41425 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 171.75-86 chr8 63608790 63609140 + 0.75 NA Intergenic Intergenic 143116 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 218.25-42 chr7 50950463 50950863 + 0.75 NA Intergenic L1M2a|LINE|L1 -157210 NM_001371008 183.75-27 chr14 47292683 47293236 + 0.75 NA intron (NM_001113498, intron 2 of 16) ERVL-B4-int|LTR|ERVL 50287 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 166.5 chr1 80696042 80696436 + 0.75 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR 54952 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 194.5-59 chr8 115804914 115805387 + 0.75 NA Intergenic Intergenic -136175 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 205-45 chr6 136195550 136195883 + 0.75 NA TTS (NM_018945) TTS (NM_018945) 54595 NM_001099286 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 197-24 chr2 169306766 169307221 + 0.75 NA intron (NM_004525, intron 4 of 78) intron (NM_004525, intron 4 of 78) 55541 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 164.75-56 chr3 117870792 117871165 + 0.75 NA Intergenic Intergenic -180053 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 226.25-10 chr17 70180547 70181137 + 0.75 NA TTS (NM_000891) TTS (NM_000891) 11307 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 165.5-54 chr20 51971005 51971526 + 0.75 NA Intergenic AluSg|SINE|Alu -108352 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 213.75-14 chr2 116271328 116271659 + 0.75 NA Intergenic Intergenic 927678 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 164.5-48 chr21 29110963 29111306 + 0.75 NA intron (NM_001286622, intron 6 of 8) AluSc8|SINE|Alu -10856 NM_001371376 150.25 chr1 22347315 22347631 + 0.75 NA Intergenic Intergenic 81234 NR_039613 100616433 NR_039613 ENSG00000266564 MIR4418 - microRNA 4418 ncRNA 195.75-22 chr14 72378713 72379118 + 0.75 NA intron (NM_001370288, intron 3 of 16) L1MA5A|LINE|L1 -137905 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 239.25-25 chr5 161187562 161188081 + 0.75 NA Intergenic L1MB5|LINE|L1 -249195 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 260.75-21 chr6 155524104 155524726 + 0.75 NA TTS (NR_134596) TTS (NR_134596) 9571 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 193.25-7 chr10 35137173 35137443 + 0.75 NA promoter-TSS (NM_183011) promoter-TSS (NM_183011) -474 NM_183012 1390 Hs.200250 NM_001881 ENSG00000095794 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 149.75-79 chr5 161579964 161580359 + 0.75 NA Intergenic Intergenic -31757 NM_000813 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 273.5-5 chr2 214778983 214779412 + 0.75 NA intron (NR_104216, intron 3 of 9) MER2|DNA|TcMar-Tigger 30486 NM_000465 580 Hs.591642 NM_000465 ENSG00000138376 BARD1 - BRCA1 associated RING domain 1 protein-coding 196.25-31 chr2 117820558 117821047 + 0.75 NA intron (NM_006773, intron 3 of 13) intron (NM_006773, intron 3 of 13) 6111 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 310 chr3 145020550 145021063 + 0.75 NA Intergenic Intergenic 1047725 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 178-25 chr16 22089959 22090318 + 0.75 NA Intergenic MLT1K|LTR|ERVL-MaLR -2403 NM_173615 146177 Hs.10697 NM_173615 ENSG00000175267 VWA3A - von Willebrand factor A domain containing 3A protein-coding 175.25-20 chr13 79077576 79077856 + 0.75 NA Intergenic L1MA7|LINE|L1 -237666 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 158-10 chr10 114723668 114723992 + 0.75 NA intron (NM_001322886, intron 1 of 20) LTR37A|LTR|ERV1 -38827 NM_001322882 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 211-15 chr16 79307271 79307746 + 0.75 NA Intergenic Intergenic 293229 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 213.25 chr1 43158532 43158993 + 0.75 NA Intergenic Intergenic 10858 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 227-9 chr2 156198217 156198651 + 0.75 NA intron (NR_110250, intron 1 of 3) intron (NR_110250, intron 1 of 3) 56497 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 160.5-11 chr1 232522596 232522874 + 0.75 NA Intergenic MIRb|SINE|MIR -7127 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 160.75-28 chr12 104123850 104124236 + 0.75 NA intron (NM_006166, intron 4 of 7) intron (NM_006166, intron 4 of 7) 14167 NM_006166 4801 Hs.84928 NM_006166 ENSG00000120837 NFYB CBF-A|CBF-B|HAP3|NF-YB nuclear transcription factor Y subunit beta protein-coding 252-5 chr17 54850692 54851037 + 0.75 NA Intergenic Intergenic -49827 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 322.5-12 chr5 37574551 37575283 + 0.75 NA intron (NM_001345998, intron 9 of 17) L2a|LINE|L2 195599 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 156.5-41 chr17 39975059 39975466 + 0.75 NA intron (NM_178171, intron 10 of 11) AluSx1|SINE|Alu -5545 NM_002809 5709 Hs.12970 NM_002809 ENSG00000108344 PSMD3 P58|RPN3|S3|TSTA2 proteasome 26S subunit, non-ATPase 3 protein-coding 193.5-60 chr5 54393252 54393809 + 0.75 NA intron (NR_126379, intron 1 of 4) L1PREC2|LINE|L1 -62169 NM_006308 8988 Hs.41707 NM_006308 ENSG00000169271 HSPB3 DHMN2C|HMN2C|HSPL27 heat shock protein family B (small) member 3 protein-coding 179.75-8 chr11 39406794 39407185 + 0.75 NA Intergenic L1MC1|LINE|L1 758131 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 283.75-2 chr11 77442067 77442733 + 0.75 NA intron (NM_001128620, intron 1 of 15) MLT1F|LTR|ERVL-MaLR 31663 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 149.5-80 chr6 70441865 70442186 + 0.75 NA intron (NM_020819, intron 3 of 20) L1MC5a|LINE|L1 -28067 NR_147708 105377849 Hs.669000 NR_147708 ENSG00000224349 LOC105377849 - uncharacterized LOC105377849 ncRNA 157.5-30 chr14 52394499 52394830 + 0.75 NA Intergenic Intergenic 80352 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 147.75-8 chr1 176923431 176923715 + 0.75 NA intron (NM_207108, intron 16 of 21) MER44A|DNA|TcMar-Tigger 105872 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 226-34 chrX 101014304 101014678 + 0.75 NA intron (NM_001167972, intron 12 of 12) FRAM|SINE|Alu 37620 NM_024917 79979 Hs.496501 NM_024917 ENSG00000188917 TRMT2B CXorf34|dJ341D10.3 tRNA methyltransferase 2 homolog B protein-coding 266.25-20 chrX 42112205 42112629 + 0.75 NA Intergenic L1PA7|LINE|L1 -188863 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 147.75-100 chr7 38158661 38159088 + 0.75 NA Intergenic L1MB2|LINE|L1 -19371 NM_001363340 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 160.5-77 chr4 116027170 116027458 + 0.75 NA Intergenic Intergenic -272411 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 216.75-9 chr17 56342584 56343207 + 0.75 NA intron (NM_001370326, intron 4 of 20) L1PA13|LINE|L1 189420 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 179.25-3 chr1 80170019 80170380 + 0.75 NA Intergenic Intergenic -365556 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 181.75-40 chr22 35000429 35000797 + 0.75 NA Intergenic MER58B|DNA|hAT-Charlie -2697 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 234.5-9 chr15 68534111 68534500 + 0.75 NA intron (NM_001324014, intron 1 of 12) intron (NM_001324014, intron 1 of 12) 15932 NM_001324014 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 283.5-19 chr8 86808464 86808938 + 0.75 NA Intergenic Intergenic -57714 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 267.5-20 chr5 164837802 164838417 + 0.75 NA Intergenic L1ME4b|LINE|L1 367830 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 253.25-2 chr12 54491643 54492039 + 0.75 NA Intergenic Intergenic -5911 NM_005337 3071 Hs.182014 NM_005337 ENSG00000123338 NCKAP1L HEM1 NCK associated protein 1 like protein-coding 207.5-30 chr4 43804809 43805310 + 0.75 NA Intergenic Intergenic -211802 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 233 chr1 118260427 118260874 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -75422 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 177-9 chr10 107425701 107426039 + 0.75 NA Intergenic L2a|LINE|L2 -261164 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 185.5-32 chr15 87348247 87348881 + 0.75 NA Intergenic Intergenic -228365 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 149.25-71 chr4 24964590 24964852 + 0.75 NA intron (NM_173463, intron 1 of 12) L1MDa|LINE|L1 15483 NM_173463 91050 Hs.106432 NM_173463 ENSG00000181982 CCDC149 - coiled-coil domain containing 149 protein-coding 159.25-30 chr18 8072897 8073365 + 0.75 NA intron (NM_002845, intron 8 of 30) intron (NM_002845, intron 8 of 30) 293903 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 254-7 chr3 86035814 86036481 + 0.75 NA intron (NM_001256502, intron 9 of 10) intron (NM_001256502, intron 9 of 10) -208097 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 245.5-4 chr1 152567859 152568375 + 0.75 NA Intergenic L1M4|LINE|L1 -1337 NM_178435 353145 Hs.490208 NM_178435 ENSG00000185966 LCE3E LEP17 late cornified envelope 3E protein-coding 252.75-10 chr17 31206690 31207120 + 0.75 NA intron (NM_001042492, intron 12 of 57) intron (NM_001042492, intron 12 of 57) 90334 NM_002544 4974 Hs.113874 NM_002544 ENSG00000126861 OMG OMGP oligodendrocyte myelin glycoprotein protein-coding 220.5-24 chr21 34919505 34919998 + 0.75 NA intron (NM_001754, intron 2 of 8) intron (NM_001754, intron 2 of 8) -31052 NM_001122607 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 196.5-47 chr6 104766567 104766990 + 0.75 NA intron (NR_146792, intron 20 of 24) intron (NR_146792, intron 20 of 24) 92768 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 184.75-76 chr8 127426058 127426444 + 0.75 NA intron (NR_117100, intron 4 of 5) intron (NR_117100, intron 4 of 5) 10426 NM_001159542 5462 Hs.450254 NM_001159542 ENSG00000212993 POU5F1B OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8 POU class 5 homeobox 1B protein-coding 224.75-36 chr6 151291667 151292167 + 0.75 NA intron (NM_005100, intron 2 of 4) intron (NM_005100, intron 2 of 4) -33614 NM_144497 9590 Hs.371240 NM_005100 ENSG00000131016 AKAP12 AKAP250|SSeCKS A-kinase anchoring protein 12 protein-coding 225-14 chr4 64163595 64164018 + 0.75 NA Intergenic Intergenic 245644 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 174.5-25 chr14 49527056 49527551 + 0.75 NA Intergenic L2c|LINE|L2 59077 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 238.75-25 chr4 124906369 124906787 + 0.75 NA Intergenic Intergenic -193846 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 175.75-12 chr12 78886880 78887136 + 0.75 NA intron (NM_001291901, intron 1 of 9) intron (NM_001291901, intron 1 of 9) 22234 NM_005639 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 200-35 chr4 62816585 62816876 + 0.75 NA Intergenic Intergenic -654965 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 220.75-7 chr12 58131510 58132067 + 0.75 NA Intergenic Intergenic 43896 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 177.5-37 chr3 173706461 173706874 + 0.75 NA intron (NM_001365928, intron 3 of 6) intron (NM_001365928, intron 3 of 6) 122233 NM_001365927 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 184.75-70 chr6 137329151 137329513 + 0.75 NA Intergenic Intergenic -109902 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 248.5-26 chr8 24905287 24905879 + 0.75 NA Intergenic Intergenic -8178 NM_005382 4741 Hs.458657 NM_005382 ENSG00000104722 NEFM NEF3|NF-M|NFM neurofilament medium protein-coding 190.5-36 chr3 79503489 79503921 + 0.75 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -4182 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 152-90 chr7 76409838 76410113 + 0.75 NA promoter-TSS (NM_080744) promoter-TSS (NM_080744) -278 NM_080744 136853 Hs.567684 NM_080744 ENSG00000146700 SSC4D S4D-SRCRB|SRCRB-S4D|SRCRB4D scavenger receptor cysteine rich family member with 4 domains protein-coding 164.75-29 chr17 59416018 59416337 + 0.75 NA Intergenic L2a|LINE|L2 50094 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 183.75-76 chr5 153111168 153111721 + 0.75 NA Intergenic Intergenic -139095 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 234.75 chr1 62152111 62152605 + 0.75 NA intron (NM_176877, intron 42 of 42) L2c|LINE|L2 -42491 NM_019079 54596 Hs.685462 NM_019079 ENSG00000240563 L1TD1 ECAT11 LINE1 type transposase domain containing 1 protein-coding 159.25-84 chr9 96681799 96682043 + 0.75 NA Intergenic AluSq|SINE|Alu -26604 NM_153698 195827 Hs.44640 NM_153698 ENSG00000158122 PRXL2C AAED1|C9orf21 peroxiredoxin like 2C protein-coding 244.5 chr10 29686186 29686661 + 0.75 NA intron (NM_001323599, intron 2 of 38) intron (NM_001323599, intron 2 of 38) 49378 NM_003174 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 171.75-23 chr14 79496408 79496843 + 0.75 NA intron (NR_073547, intron 15 of 20) intron (NR_073547, intron 15 of 20) 217245 NM_001105250 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 310.5-3 chr2 169750437 169751165 + 0.75 NA non-coding (NR_144936, exon 5 of 5) non-coding (NR_144936, exon 5 of 5) 16969 NM_144711 151230 Hs.655150 NM_144711 ENSG00000213160 KLHL23 DITHP kelch like family member 23 protein-coding 162-66 chr5 155888484 155888861 + 0.75 NA Intergenic MER39|LTR|ERV1 -438085 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 251-7 chr3 103204880 103205529 + 0.75 NA Intergenic L1MEd|LINE|L1 318912 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 176.75-47 chr22 26296583 26297031 + 0.75 NA intron (NM_001184776, intron 3 of 14) intron (NM_001184776, intron 3 of 14) 127333 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 189-31 chr2 129102905 129103246 + 0.75 NA Intergenic MLT1E2|LTR|ERVL-MaLR 170816 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 233.75-30 chr6 154842789 154843443 + 0.75 NA Intergenic Charlie26a|DNA|hAT-Charlie -10244 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 159-54 chr3 79123129 79123441 + 0.75 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) -103826 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 214.75-47 chr7 79909671 79910135 + 0.75 NA Intergenic Intergenic -224928 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 146-101 chr8 138317272 138317480 + 0.75 NA intron (NM_015912, intron 2 of 19) L1MD1|LINE|L1 179885 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 187.5-27 chr18 58201783 58202301 + 0.75 NA intron (NM_001144970, intron 1 of 28) intron (NM_001144970, intron 1 of 28) 6637 NM_001144970 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 157.75-2 chr1 60959385 60959762 + 0.75 NA intron (NR_110618, intron 2 of 3) intron (NR_110618, intron 2 of 3) 11203 NR_110618 100996570 Hs.46616 NR_110617 ENSG00000237928 NFIA-AS2 - NFIA antisense RNA 2 ncRNA 185.75-5 chr10 8631648 8631930 + 0.75 NA Intergenic Intergenic -37398 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 146.5-64 chr20 15315048 15315317 + 0.75 NA intron (NM_001351663, intron 6 of 17) L1M4|LINE|L1 118342 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 263-9 chr2 67892424 67893120 + 0.75 NA Intergenic Intergenic -67210 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 173.5-58 chr4 32633107 32633456 + 0.75 NA Intergenic Intergenic 282243 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 216.25-6 chr11 46746556 46747061 + 0.75 NA intron (NM_001008938, intron 42 of 43) Tigger3c|DNA|TcMar-Tigger 6384 NR_049846 100847020 NR_049846 ENSG00000263540 MIR5582 - microRNA 5582 ncRNA 204-14 chr16 77185198 77185676 + 0.75 NA Intergenic L1ME1|LINE|L1 -5753 NM_014940 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 163-4 chr1 152979127 152979560 + 0.75 NA Intergenic Intergenic -4738 NM_001199828 6698 Hs.46320 NM_005987 ENSG00000169474 SPRR1A SPRK small proline rich protein 1A protein-coding 171.5-33 chr15 83993428 83993751 + 0.75 NA intron (NM_207517, intron 23 of 29) intron (NM_207517, intron 23 of 29) -86598 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 213.75 chr1 7939825 7940198 + 0.75 NA 5' UTR (NM_001561, exon 3 of 9) 5' UTR (NM_001561, exon 3 of 9) 3154 NM_001561 3604 Hs.86447 NM_001561 ENSG00000049249 TNFRSF9 4-1BB|CD137|CDw137|ILA TNF receptor superfamily member 9 protein-coding 154-24 chr12 90577916 90578325 + 0.75 NA Intergenic L1PB4|LINE|L1 284802 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 243.25-16 chr3 12609898 12610375 + 0.75 NA intron (NM_001354695, intron 2 of 14) intron (NM_001354695, intron 2 of 14) 53049 NM_014160 23609 Hs.591666 NM_014160 ENSG00000075975 MKRN2 HSPC070|RNF62 makorin ring finger protein 2 protein-coding 153.25-116 chr9 71118832 71119096 + 0.75 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 2657 NM_001366145 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 307.5-4 chr2 52166282 52167185 + 0.75 NA intron (NR_135237, intron 7 of 10) LTR86C|LTR|ERVL -203915 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 251.5-22 chr4 70664065 70664633 + 0.75 NA intron (NM_144646, intron 1 of 3) intron (NM_144646, intron 1 of 3) 2159 NM_144646 3512 Hs.643431 NM_144646 ENSG00000132465 JCHAIN IGCJ|IGJ|JCH joining chain of multimeric IgA and IgM protein-coding 200.25-38 chr4 181242261 181242605 + 0.75 NA Intergenic AluYc|SINE|Alu 22596 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 181.5-12 chr10 110987414 110987765 + 0.75 NA intron (NM_007373, intron 3 of 8) intron (NM_007373, intron 3 of 8) -1337 NR_031614 100313921 NR_031614 ENSG00000221214 MIR548E MIRN548E|hsa-mir-548e microRNA 548e ncRNA 225.5-51 chr7 133718612 133718930 + 0.75 NA intron (NM_021807, intron 10 of 17) MIR|SINE|MIR 106117 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 232.5-9 chr12 121314435 121314908 + 0.75 NA intron (NM_001137559, intron 15 of 16) AluSz|SINE|Alu -16363 NM_172216 10645 Hs.297343 NM_006549 ENSG00000110931 CAMKK2 CAMKK|CAMKKB calcium/calmodulin dependent protein kinase kinase 2 protein-coding 239.5-36 chrX 51764017 51764599 + 0.75 NA Intergenic AluSx|SINE|Alu 20866 NM_018094 23708 Hs.59523 NM_018094 ENSG00000189369 GSPT2 ERF3B|GST2 G1 to S phase transition 2 protein-coding 173-76 chr7 51957114 51957432 + 0.75 NA Intergenic L1M1|LINE|L1 -564017 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 162.25-10 chr11 40604753 40605219 + 0.75 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -311856 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 173-89 chr8 127042610 127043088 + 0.75 NA Intergenic L2b|LINE|L2 29695 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 150.25-3 chr1 69256709 69257089 + 0.75 NA Intergenic Intergenic -176356 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 157.25-63 chr3 144295869 144296145 + 0.75 NA Intergenic HSMAR2|DNA|TcMar-Mariner 322926 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 189-15 chr12 41909362 41909658 + 0.75 NA Intergenic Intergenic 145321 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 190.25-56 chr8 77824715 77825137 + 0.75 NA Intergenic L1MCa|LINE|L1 374229 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 204.5-30 chr5 24598065 24598562 + 0.75 NA intron (NM_001362460, intron 1 of 9) intron (NM_001362460, intron 1 of 9) 46665 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 182.5-82 chr8 139350233 139350486 + 0.75 NA Intergenic Intergenic 352764 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 151.5-91 chr7 95207316 95207559 + 0.75 NA intron (NM_001166160, intron 7 of 19) L1ME3E|LINE|L1 117095 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 194.5-34 chr2 207361552 207361946 + 0.75 NA Intergenic L1MB8|LINE|L1 -92325 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 366.5-8 chr8 62074313 62074874 + 0.75 NA Intergenic MER3|DNA|hAT-Charlie -174261 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 184.25-13 chr11 58571174 58571552 + 0.75 NA intron (NM_001143995, intron 1 of 8) (AAAT)n|Simple_repeat|Simple_repeat 4554 NM_004811 9404 Hs.125474 NM_004811 ENSG00000110031 LPXN LDPL leupaxin protein-coding 184.5-52 chr3 56570010 56570413 + 0.75 NA intron (NR_148378, intron 6 of 16) intron (NR_148378, intron 6 of 16) 13036 NM_001141947 285331 Hs.476399 NM_001012506 ENSG00000180376 CCDC66 - coiled-coil domain containing 66 protein-coding 209.75-41 chr8 80991259 80991801 + 0.75 NA exon (NM_018440, exon 5 of 9) exon (NM_018440, exon 5 of 9) -116749 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 173-68 chr6 96066647 96067197 + 0.75 NA intron (NM_006581, intron 1 of 2) intron (NM_006581, intron 1 of 2) 50948 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 270-17 chr8 74534085 74534620 + 0.75 NA Intergenic Intergenic -14191 NR_049860 100847058 NR_049860 ENSG00000266502 MIR5681A - microRNA 5681a ncRNA 244.5-17 chr18 73763026 73763375 + 0.75 NA Intergenic MER1B|DNA|hAT-Charlie 384634 NM_152676 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 179.5-26 chr15 44315025 44315357 + 0.75 NA intron (NR_157849, intron 1 of 9) intron (NR_157849, intron 1 of 9) 26472 NR_157849 113201 Hs.512867 NM_138423 ENSG00000166734 CASC4 H63 cancer susceptibility 4 protein-coding 220.25-16 chr17 73934274 73934594 + 0.75 NA Intergenic MLT1K|LTR|ERVL-MaLR -105897 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 203-32 chr4 38185520 38185862 + 0.75 NA Intergenic Intergenic 65737 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 175.5-83 chr6 164153766 164154199 + 0.75 NA Intergenic Intergenic -482498 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 179.75-30 chr20 10006400 10006660 + 0.75 NA non-coding (NR_109861, exon 2 of 2) non-coding (NR_109861, exon 2 of 2) 20197 NR_109861 101929371 Hs.619265 NR_109861 PARAL1 - PPARG activating RBM14 associated lncRNA 1 ncRNA 189.25-32 chr22 48891206 48891557 + 0.75 NA intron (NR_038944, intron 3 of 6) intron (NR_038944, intron 3 of 6) 24611 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 220.25-43 chr8 97036281 97036654 + 0.75 NA intron (NM_016134, intron 6 of 7) intron (NM_016134, intron 6 of 7) 241461 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 153.5-81 chr5 42005411 42005664 + 0.75 NA Intergenic Intergenic 80256 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 231.75-17 chr3 69587192 69587670 + 0.75 NA Intergenic L1MA8|LINE|L1 -152033 NM_001354604 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 289.5-2 chr1 225340202 225340699 + 0.75 NA intron (NM_001367479, intron 68 of 85) intron (NM_001367479, intron 68 of 85) 87588 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 186-6 chr11 106910322 106910727 + 0.75 NA intron (NM_001256424, intron 4 of 8) intron (NM_001256424, intron 4 of 8) 107952 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 156.75-51 chr2 84386866 84387204 + 0.75 NA Intergenic MIR|SINE|MIR 72245 NM_003849 8802 Hs.270428 NM_003849 ENSG00000163541 SUCLG1 GALPHA|MTDPS9|SUCLA1 succinate-CoA ligase alpha subunit protein-coding 331.25-6 chr5 79674624 79675486 + 0.75 NA intron (NM_001349553, intron 14 of 16) L2|LINE|L2 -14781 NM_153610 202333 Hs.482625 NM_153610 ENSG00000164309 CMYA5 C5orf10|SPRYD2|TRIM76 cardiomyopathy associated 5 protein-coding 154.75-110 chr9 115190541 115190916 + 0.75 NA intron (NR_163556, intron 1 of 7) L1MA4|LINE|L1 48910 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 163.25-25 chr13 86151524 86152017 + 0.75 NA Intergenic L1ME1|LINE|L1 -352351 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 171.25-9 chr11 79632473 79633051 + 0.75 NA Intergenic Intergenic -191732 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 164-54 chr3 194782580 194782997 + 0.75 NA TTS (NR_037891) TTS (NR_037891) -14079 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 166.25-72 chrX 35182649 35182954 + 0.75 NA Intergenic Intergenic 240005 NM_152631 170062 Hs.197801 NM_152631 ENSG00000189132 FAM47B - family with sequence similarity 47 member B protein-coding 195.25-16 chr15 76193074 76193416 + 0.75 NA intron (NM_152335, intron 9 of 10) AluJr|SINE|Alu -11759 NR_120360 101929439 Hs.631721 NR_120360 ENSG00000259422 LOC101929439 - uncharacterized LOC101929439 ncRNA 227 chr1 159238805 159239368 + 0.75 NA Intergenic LTR85a|LTR|Gypsy? 34211 NM_002036 2532 Hs.153381 NM_002036 ENSG00000213088 ACKR1 CCBP1|CD234|DARC|DARC/ACKR1|Dfy|FY|GPD|GpFy|WBCQ1 atypical chemokine receptor 1 (Duffy blood group) protein-coding 177.25-69 chr7 78212240 78212699 + 0.75 NA intron (NM_001301128, intron 10 of 20) MLT1D|LTR|ERVL-MaLR -134773 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 343.25-4 chr5 111834609 111835338 + 0.75 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) -76755 NM_001142476 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 181.75-26 chr14 58657907 58658221 + 0.75 NA Intergenic Intergenic 19227 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 169.75-32 chr14 58878180 58878510 + 0.75 NA intron (NR_110547, intron 1 of 5) intron (NR_110547, intron 1 of 5) 50057 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 242.75-26 chr7 27299421 27299971 + 0.75 NA Intergenic Intergenic -52467 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 167.5-86 chr7 24692394 24692719 + 0.75 NA 3' UTR (NM_001303037, exon 12 of 12) 3' UTR (NM_001303037, exon 12 of 12) 64908 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 169.5-16 chr11 8097429 8097697 + 0.75 NA intron (NM_177972, intron 7 of 11) intron (NM_177972, intron 7 of 11) 16201 NM_177972 7275 Hs.568986 NM_003320 ENSG00000166402 TUB RDOB|rd5 TUB bipartite transcription factor protein-coding 186.5-58 chr5 59103661 59103990 + 0.75 NA intron (NM_001364603, intron 5 of 15) intron (NM_001364603, intron 5 of 15) -64349 NM_001197222 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 180.5-47 chr3 104453177 104453602 + 0.75 NA Intergenic L1MEf|LINE|L1 -913324 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 287-4 chr2 192886242 192886699 + 0.75 NA Intergenic Intergenic 136625 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 226.5-15 chr2 59722858 59723273 + 0.75 NA Intergenic L2b|LINE|L2 505357 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 186-49 chr7 114045574 114045883 + 0.75 NA Intergenic Intergenic -40599 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 172.25-30 chr2 14228310 14228715 + 0.75 NA TTS (NR_103814) TTS (NR_103814) 172446 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 346.75 chr14 57730380 57731140 + 0.75 NA intron (NR_159373, intron 1 of 10) intron (NR_159373, intron 1 of 10) 134239 NM_001352013 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 223.5-34 chr5 144618758 144619062 + 0.75 NA Intergenic L1MEf|LINE|L1 413519 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 156.5-85 chr5 63952875 63953137 + 0.75 NA Intergenic L2a|LINE|L2 9286 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 192.5-32 chr3 16869394 16869865 + 0.75 NA Intergenic MER105|DNA|hAT-Charlie -15326 NM_001144382 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 305-8 chr7 21808293 21808838 + 0.75 NA intron (NM_001277115, intron 63 of 81) L1MA4|LINE|L1 137334 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 196.75-36 chr3 175198135 175198546 + 0.75 NA intron (NM_207015, intron 2 of 13) intron (NM_207015, intron 2 of 13) 72756 NR_046713 100874244 Hs.581176 NR_046713 NAALADL2-AS2 - NAALADL2 antisense RNA 2 ncRNA 222.75-5 chr11 21732751 21733410 + 0.75 NA Intergenic Intergenic -460005 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 202.25 chr1 113631831 113632301 + 0.75 NA intron (NM_001142782, intron 9 of 20) intron (NM_001142782, intron 9 of 20) 127089 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 213.5-27 chr3 27248210 27248777 + 0.75 NA intron (NM_199347, intron 24 of 24) L1M1|LINE|L1 -31970 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 148.25-88 chr7 83459320 83459605 + 0.75 NA intron (NM_001178129, intron 4 of 16) intron (NM_001178129, intron 4 of 16) 181969 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 172.25-57 chr4 171331465 171331753 + 0.75 NA Intergenic L1PA15-16|LINE|L1 145425 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 150.75-70 chr5 11793961 11794340 + 0.75 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 110296 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 289.25-16 chr7 36595097 36595733 + 0.75 NA intron (NM_001177507, intron 10 of 19) AluJb|SINE|Alu 4705 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 206.75-35 chr4 39012040 39012491 + 0.75 NA intron (NM_001303228, intron 1 of 6) intron (NM_001303228, intron 1 of 6) 20144 NM_024943 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 239.75-20 chr5 120441182 120441886 + 0.75 NA Intergenic Intergenic -22744 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 194-36 chr4 129380427 129380938 + 0.75 NA Intergenic LTR78B|LTR|ERV1 284530 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 201.5-67 chr9 81965001 81965357 + 0.75 NA Intergenic L1MCb|LINE|L1 21679 NM_207416 389762 Hs.522246 NM_207416 ENSG00000186788 SPATA31D3 FAM75D3 SPATA31 subfamily D member 3 protein-coding 168.25-43 chr3 8084163 8084554 + 0.75 NA Intergenic L1MA4|LINE|L1 -68051 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 150.75-66 chr4 94380435 94380757 + 0.75 NA Intergenic Intergenic -37760 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 227.75-6 chr11 32799606 32800083 + 0.75 NA Intergenic Intergenic -5186 NM_001008391 493860 Hs.706808 NM_001008391 ENSG00000186714 CCDC73 NY-SAR-79 coiled-coil domain containing 73 protein-coding 163.5-44 chr17 51107213 51107598 + 0.75 NA intron (NM_001130527, intron 1 of 29) AluJr|SINE|Alu 13463 NM_003971 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 189-65 chr9 30711053 30711514 + 0.75 NA Intergenic L1M5|LINE|L1 -302829 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 235-2 chr10 8069731 8070275 + 0.75 NA intron (NM_001002295, intron 5 of 5) A-rich|Low_complexity|Low_complexity 15315 NM_002051 2625 Hs.524134 NM_002051 ENSG00000107485 GATA3 HDR|HDRS GATA binding protein 3 protein-coding 259-6 chr18 70168240 70168654 + 0.75 NA intron (NM_001318520, intron 12 of 47) intron (NM_001318520, intron 12 of 47) 37240 NM_001318520 25914 Hs.654809 NM_173630 ENSG00000176225 RTTN MSSP rotatin protein-coding 202.5-20 chr15 94360703 94361048 + 0.75 NA intron (NM_018349, intron 9 of 21) intron (NM_018349, intron 9 of 21) 4945 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 164-44 chr21 43662597 43662954 + 0.75 NA intron (NM_015056, intron 1 of 15) L2a|LINE|L2 3215 NM_015056 23076 Hs.565725 NM_015056 ENSG00000160208 RRP1B KIAA0179|NNP1L|Nnp1|PPP1R136|RRP1 ribosomal RNA processing 1B protein-coding 152.5-50 chr2 49188236 49188497 + 0.75 NA Intergenic Intergenic -33839 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 183.25-62 chr5 40460771 40461249 + 0.75 NA Intergenic L1MA4|LINE|L1 -218905 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 306.25-2 chr1 199509148 199509729 + 0.75 NA Intergenic Intergenic 360840 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 192.75-36 chr22 23027652 23028058 + 0.75 NA Intergenic MER21-int|LTR|ERVL -42664 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 238.5-21 chr2 153318789 153319262 + 0.75 NA Intergenic MIRb|SINE|MIR 159737 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 158.25-27 chr11 115362233 115362689 + 0.75 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 28884 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 220.75-12 chr15 95517937 95518334 + 0.75 NA Intergenic Intergenic 85042 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 234.75-25 chr8 112919596 112920042 + 0.75 NA intron (NM_001363185, intron 8 of 66) intron (NM_001363185, intron 8 of 66) 276326 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 222.25 chr1 38831029 38831477 + 0.75 NA Intergenic Intergenic 28519 NM_022157 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 163.25-64 chr6 12045690 12046218 + 0.75 NA intron (NM_002114, intron 2 of 8) intron (NM_002114, intron 2 of 8) 33642 NM_002114 3096 Hs.567284 NM_002114 ENSG00000095951 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 151.75-28 chr14 59846549 59846862 + 0.75 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 24071 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 149.5-58 chr3 17623846 17624245 + 0.75 NA intron (NM_001349090, intron 1 of 21) intron (NM_001349090, intron 1 of 21) 75975 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 322-4 chrX 9776139 9776889 + 0.75 NA Intergenic AluJr|SINE|Alu -9915 NM_001649 357 Hs.567236 NM_001649 ENSG00000146950 SHROOM2 APXL|HSAPXL shroom family member 2 protein-coding 171.25-38 chr3 35372638 35372920 + 0.75 NA intron (NR_110817, intron 1 of 3) intron (NR_110817, intron 1 of 3) 21244 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 153.25-94 chr5 88440686 88441166 + 0.75 NA Intergenic Intergenic -1836 NR_105021 102546226 Hs.535810 NR_105021 ENSG00000250156 LINC02060 - long intergenic non-protein coding RNA 2060 ncRNA 149.75-58 chr3 123514611 123515001 + 0.75 NA intron (NM_001329786, intron 3 of 5) intron (NM_001329786, intron 3 of 5) -66261 NM_183357 111 Hs.593292 NM_183357 ENSG00000173175 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 301.5-7 chr18 70802345 70803090 + 0.75 NA Intergenic Intergenic -151763 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 224-20 chr3 55173657 55174051 + 0.75 NA Intergenic Intergenic -4318 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 204.25-46 chr6 62365702 62366050 + 0.75 NA Intergenic Intergenic -79649 NM_001350622 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 229-9 chr14 87856360 87856762 + 0.75 NA Intergenic Intergenic 136621 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 170-66 chr8 110530181 110530438 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR 497124 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 153-86 chr7 135630570 135630964 + 0.75 NA intron (NM_015135, intron 35 of 42) AluJr4|SINE|Alu -31747 NM_001130929 647087 Hs.200022 NM_001130929 ENSG00000243317 STMP1 C7orf73|PL-5283 short transmembrane mitochondrial protein 1 protein-coding 226-12 chr17 55958367 55958789 + 0.75 NA Intergenic Intergenic -194897 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 277.5-18 chr7 29832041 29832770 + 0.75 NA intron (NM_001080529, intron 1 of 8) intron (NM_001080529, intron 1 of 8) 25851 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 162.25-90 chr8 13908638 13908953 + 0.75 NA Intergenic L1MEg|LINE|L1 279105 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 146.25-28 chr14 46695914 46696197 + 0.75 NA Intergenic L2a|LINE|L2 -44274 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 257.25-11 chr14 77633512 77633953 + 0.75 NA Intergenic AluSx4|SINE|Alu -16965 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 152.5-70 chr3 103339194 103339592 + 0.75 NA Intergenic MIRb|SINE|MIR 184723 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 154.75-80 chr5 26311325 26311743 + 0.75 NA Intergenic L1M5|LINE|L1 727052 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 180.25-73 chr8 60513363 60513623 + 0.75 NA Intergenic Intergenic -3417 NM_001242644 5862 Hs.369017 NM_002865 ENSG00000104388 RAB2A LHX|RAB2 RAB2A, member RAS oncogene family protein-coding 200.75-42 chr5 77867681 77868030 + 0.75 NA Intergenic Intergenic -16801 NR_105012 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 194-19 chr13 53483236 53483651 + 0.75 NA Intergenic Intergenic -331543 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 203.75-4 chr12 25767114 25767456 + 0.75 NA Intergenic L1ME3A|LINE|L1 106794 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 301.5-18 chr8 124854090 124854849 + 0.75 NA Intergenic Intergenic -32411 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 177.5-60 chr8 121057957 121058449 + 0.75 NA Intergenic MER113|DNA|hAT-Charlie -246157 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 253.5-5 chr11 95842784 95843355 + 0.75 NA intron (NM_001243571, intron 14 of 17) Charlie1a|DNA|hAT-Charlie 52571 NM_014679 9702 Hs.101014 NM_014679 ENSG00000166037 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57 protein-coding 178-24 chr15 60679104 60679415 + 0.75 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) -2310 NR_120318 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 240.75-16 chr3 106128749 106129238 + 0.75 NA Intergenic Intergenic -259592 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 196.5-36 chr3 194598610 194598954 + 0.75 NA intron (NM_138399, intron 9 of 10) MamRep605|LTR?|LTR? 14514 NR_047574 100507297 Hs.586059 NR_047573 TMEM44-AS1 - TMEM44 antisense RNA 1 ncRNA 236-22 chr3 4036751 4037355 + 0.75 NA Intergenic Intergenic -236178 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 198.75-34 chr3 39948191 39948649 + 0.75 NA intron (NM_001284424, intron 2 of 15) intron (NM_001284424, intron 2 of 15) 138760 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 194.75-24 chr2 187220592 187221182 + 0.75 NA Intergenic L1P2|LINE|L1 227365 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 228.5-32 chr22 26330917 26331355 + 0.75 NA intron (NM_001184776, intron 9 of 14) intron (NM_001184776, intron 9 of 14) -98124 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 185.75-42 chr2 162080999 162081389 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL 6337 NR_147697 100131604 NR_147697 LOC100131604 - uncharacterized LOC100131604 ncRNA 158.75-36 chr19 55249305 55249556 + 0.75 NA intron (NM_014931, intron 1 of 23) AluSx1|SINE|Alu -4180 NR_106861 102466739 NR_106861 ENSG00000278264 MIR6803 hsa-mir-6803 microRNA 6803 ncRNA 201.75-5 chr10 33450799 33451221 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -116105 NR_045259 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 207.75-32 chr4 58484511 58484949 + 0.75 NA Intergenic L1MC1|LINE|L1 51598 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 169.25-24 chr18 13700112 13700404 + 0.75 NA intron (NM_001098801, intron 1 of 4) intron (NM_001098801, intron 1 of 4) 26300 NM_001098801 125228 Hs.13034 NM_152352 ENSG00000177150 FAM210A C18orf19|HsT2329 family with sequence similarity 210 member A protein-coding 202-51 chr8 116904971 116905571 + 0.75 NA Intergenic MLT1H1|LTR|ERVL-MaLR -30405 NM_006265 5885 Hs.81848 NM_006265 ENSG00000164754 RAD21 CDLS4|HR21|HRAD21|MCD1|MGS|NXP1|SCC1|hHR21 RAD21 cohesin complex component protein-coding 169.75-26 chr13 36680590 36680943 + 0.75 NA intron (NM_203451, intron 1 of 1) AluSc|SINE|Alu 6746 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 305.25-8 chr7 15114772 15115533 + 0.75 NA Intergenic L1ME1|LINE|L1 -140294 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 161-61 chr4 58167633 58167914 + 0.75 NA Intergenic MER34B|LTR|ERV1 368555 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 299.75-3 chr3 4596578 4597219 + 0.75 NA intron (NM_001168272, intron 4 of 60) intron (NM_001168272, intron 4 of 60) 103550 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 236.75-9 chr2 17859580 17859987 + 0.75 NA Intergenic LTR78B|LTR|ERV1 -18064 NM_001282428 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 284.75-3 chr12 24443263 24443671 + 0.75 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 119024 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 207.25-47 chr5 98889089 98889531 + 0.75 NA intron (NM_001364113, intron 15 of 36) intron (NM_001364113, intron 15 of 36) 37224 NM_001270 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 160.25-16 chr12 13504127 13504397 + 0.75 NA Intergenic Intergenic -127517 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 206.5-6 chr10 72289313 72289631 + 0.75 NA Intergenic (AAAC)n|Simple_repeat|Simple_repeat 15548 NM_019058 54541 Hs.744875 NM_019058 ENSG00000168209 DDIT4 Dig2|REDD-1|REDD1 DNA damage inducible transcript 4 protein-coding 225.5-39 chr5 29409029 29409446 + 0.75 NA Intergenic L1MA6|LINE|L1 -13261 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 180.25-27 chr19 37336945 37337192 + 0.75 NA intron (NR_138117, intron 2 of 5) intron (NR_138117, intron 2 of 5) 2419 NM_001353804 284459 Hs.640243 NM_181786 ENSG00000181666 ZNF875 HKR1 zinc finger protein 875 protein-coding 221.5-8 chr11 6451455 6451900 + 0.75 NA intron (NM_006458, intron 8 of 12) L2c|LINE|L2 -10690 NM_000613 3263 Hs.426485 NM_000613 ENSG00000110169 HPX HX hemopexin protein-coding 227.5-32 chr8 86611871 86612473 + 0.75 NA intron (NM_019098, intron 13 of 17) intron (NM_019098, intron 13 of 17) 97737 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 159.75-73 chr4 110468751 110469047 + 0.75 NA Intergenic Intergenic -7256 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 225.75-23 chr5 14541377 14541862 + 0.75 NA Intergenic L1M2|LINE|L1 -40173 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 171.75-43 chr20 31524172 31524589 + 0.75 NA intron (NM_178580, intron 1 of 12) L1ME4b|LINE|L1 9938 NM_178582 81502 Hs.373741 NM_030789 ENSG00000101294 HM13 H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1 histocompatibility minor 13 protein-coding 162-65 chr5 151350313 151350678 + 0.75 NA Intergenic Intergenic -2936 NM_181776 153201 Hs.483877 NM_181776 ENSG00000186335 SLC36A2 PAT2|TRAMD1 solute carrier family 36 member 2 protein-coding 180.75-72 chr8 119351992 119352354 + 0.75 NA Intergenic Intergenic 27002 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 162-6 chr1 176774684 176775140 + 0.75 NA intron (NM_020318, intron 17 of 22) L2c|LINE|L2 254533 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 268.25-24 chr8 88546796 88547289 + 0.75 NA Intergenic Intergenic -219559 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 305-2 chr15 58673290 58673889 + 0.75 NA intron (NM_001320570, intron 4 of 14) intron (NM_001320570, intron 4 of 14) 20018 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 241.25-3 chr1 184673935 184674277 + 0.75 NA Intergenic L1MA7|LINE|L1 80752 NM_025191 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 164.75-5 chr1 185754615 185755051 + 0.75 NA intron (NM_031935, intron 1 of 106) AluJb|SINE|Alu 20442 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 157.25-101 chr8 81599544 81599880 + 0.75 NA Intergenic LTR8|LTR|ERV1 31565 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 174.25-31 chr2 116586717 116587142 + 0.75 NA Intergenic MER63D|DNA|hAT-Blackjack -1227762 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 240.25-10 chr14 45769272 45769725 + 0.75 NA Intergenic Intergenic -53896 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 275-6 chr16 71739641 71740226 + 0.75 NA intron (NM_001128, intron 19 of 22) L1ME3C|LINE|L1 -15232 NM_015020 23035 Hs.709458 NM_015020 ENSG00000040199 PHLPP2 PHLPPL|PPM3B PH domain and leucine rich repeat protein phosphatase 2 protein-coding 280.5 chr11 82119308 82119886 + 0.75 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) -228761 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 161.5-2 chr1 81568585 81569023 + 0.75 NA intron (NM_001366008, intron 2 of 26) intron (NM_001366008, intron 2 of 26) -11102 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 171-54 chr5 104533815 104534220 + 0.75 NA Intergenic Intergenic -565457 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 154-99 chr7 42117981 42118216 + 0.75 NA intron (NM_000168, intron 3 of 14) intron (NM_000168, intron 3 of 14) 119111 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 206-39 chrX 132114751 132115172 + 0.75 NA intron (NM_194277, intron 1 of 11) intron (NM_194277, intron 1 of 11) 13059 NM_001306193 90167 Hs.170776 NM_194277 ENSG00000165694 FRMD7 NYS|NYS1|XIPAN FERM domain containing 7 protein-coding 146.75-127 chrX 71640445 71640830 + 0.75 NA Intergenic AluSz6|SINE|Alu -22126 NM_001142797 2833 Hs.198252 NM_001504 ENSG00000186810 CXCR3 CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR C-X-C motif chemokine receptor 3 protein-coding 153.5-118 chr9 28910871 28911262 + 0.75 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) -22111 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 187.75-33 chr19 32387079 32387560 + 0.75 NA 3' UTR (NM_014910, exon 6 of 6) 3' UTR (NM_014910, exon 6 of 6) 18220 NR_046201 400684 Hs.438766 NR_046201 ENSG00000267213 LOC400684 - uncharacterized LOC400684 ncRNA 354.5-6 chr7 82438684 82439264 + 0.75 NA intron (NM_000722, intron 1 of 38) intron (NM_000722, intron 1 of 38) 4803 NM_000722 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 160.25-53 chr4 62851840 62852246 + 0.75 NA Intergenic Intergenic -690278 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 154.75-98 chr8 49885385 49885720 + 0.75 NA Intergenic L1MB7|LINE|L1 -24244 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 238.25-21 chr3 74054087 74054484 + 0.75 NA Intergenic MER58A|DNA|hAT-Charlie 245041 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 247.5-35 chr8 86144300 86144897 + 0.75 NA intron (NM_152565, intron 5 of 7) intron (NM_152565, intron 5 of 7) 45688 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 344.5-7 chr3 26457660 26458465 + 0.75 NA Intergenic L2c|LINE|L2 -164744 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 157.75-69 chr3 130891642 130891961 + 0.75 NA intron (NM_001199181, intron 1 of 26) (TA)n|Simple_repeat|Simple_repeat -2214 NM_001001485 27032 Hs.584884 NM_014382 ENSG00000017260 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase secretory pathway Ca2+ transporting 1 protein-coding 316.25-4 chr22 35256898 35257449 + 0.75 NA promoter-TSS (NR_027780) promoter-TSS (NR_027780) -320 NR_027780 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 196.25-40 chr3 103425789 103426282 + 0.75 NA Intergenic LTR40a|LTR|ERVL 98081 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 241.25-10 chr14 59825191 59825828 + 0.75 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 45267 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 204.75-46 chr5 162815301 162815793 + 0.75 NA Intergenic Intergenic -622024 NM_001364019 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 176.5-95 chr8 129951955 129952384 + 0.75 NA intron (NM_001353256, intron 2 of 13) AluSp|SINE|Alu -12358 NM_001353314 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 232.25-9 chr11 47088017 47088613 + 0.75 NA intron (NM_001003677, intron 3 of 8) intron (NM_001003677, intron 3 of 8) 88564 NM_032389 84364 Hs.436204 NM_032389 ENSG00000149182 ARFGAP2 IRZ|NBLA10535|ZFP289|ZNF289 ADP ribosylation factor GTPase activating protein 2 protein-coding 253.75-15 chr2 65882416 65882948 + 0.75 NA Intergenic Intergenic -450083 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 231.5-39 chr9 32531889 32532551 + 0.75 NA Intergenic Intergenic -6024 NM_014314 23586 Hs.190622 NM_014314 ENSG00000107201 DDX58 RIG-I|RIG1|RIGI|RLR-1|SGMRT2 DExD/H-box helicase 58 protein-coding 152-3 chr1 45924666 45925026 + 0.75 NA intron (NM_001324320, intron 4 of 29) MLT1B|LTR|ERVL-MaLR 60498 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 151.25-99 chr8 130206680 130207018 + 0.75 NA intron (NM_001362925, intron 5 of 29) intron (NM_001362925, intron 5 of 29) 89684 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 150-16 chr11 35662121 35662350 + 0.75 NA promoter-TSS (NM_017583) promoter-TSS (NM_017583) -540 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 173.25-65 chr6 7658544 7658972 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -67341 NM_001718 654 Hs.285671 NM_001718 ENSG00000153162 BMP6 VGR|VGR1 bone morphogenetic protein 6 protein-coding 171.75-17 chr11 99534626 99535022 + 0.75 NA intron (NM_001243271, intron 2 of 20) L2a|LINE|L2 -21321 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 348.75-11 chr8 49299961 49300549 + 0.75 NA Intergenic AluSx1|SINE|Alu 211925 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 225.5-26 chr20 37061815 37062275 + 0.75 NA 5' UTR (NM_001323282, exon 8 of 22) 5' UTR (NM_001323282, exon 8 of 22) 33952 NM_001323281 5933 Hs.207745 NM_002895 ENSG00000080839 RBL1 CP107|PRB1|p107 RB transcriptional corepressor like 1 protein-coding 206.75-42 chr5 5304301 5304721 + 0.75 NA intron (NM_139056, intron 20 of 22) intron (NM_139056, intron 20 of 22) -118166 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 166.75-80 chr6 156226302 156226647 + 0.75 NA Intergenic L1MA2|LINE|L1 -152276 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 194.75-12 chr14 56131519 56132005 + 0.75 NA intron (NM_021255, intron 1 of 5) intron (NM_021255, intron 1 of 5) 13351 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 176-2 chr1 47835769 47836050 + 0.75 NA intron (NM_001194986, intron 2 of 6) L1M4|LINE|L1 161476 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 156.25-53 chr22 37223736 37224008 + 0.75 NA Intergenic Intergenic -11395 NM_001051 6753 Hs.225995 NM_001051 ENSG00000278195 SSTR3 SS-3-R|SS3-R|SS3R|SSR-28 somatostatin receptor 3 protein-coding 162.75-76 chr6 153865403 153865687 + 0.75 NA Intergenic Intergenic -144951 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 194-55 chr8 103470217 103470781 + 0.75 NA Intergenic LTR75|LTR|ERVL 28732 NR_145705 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 165.25-37 chr3 1152358 1152646 + 0.75 NA intron (NM_001289080, intron 2 of 22) intron (NM_001289080, intron 2 of 22) 59478 NM_001349350 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 283.25-4 chr20 15319876 15320435 + 0.75 NA intron (NM_001351663, intron 6 of 17) AluSx|SINE|Alu 123315 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 176.5-67 chr5 123569231 123569715 + 0.75 NA intron (NM_001044723, intron 3 of 12) Charlie1a|DNA|hAT-Charlie 24056 NM_001270572 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 186.75-20 chr12 40715443 40715726 + 0.75 NA intron (NM_001256063, intron 1 of 15) intron (NM_001256063, intron 1 of 15) 23142 NM_001256063 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 254-17 chrX 94918368 94918870 + 0.75 NA Intergenic HERVL-int|LTR|ERVL 144607 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 202.5-16 chr12 117977866 117978153 + 0.75 NA Intergenic AluSx1|SINE|Alu -9019 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 335.25-3 chr5 140502651 140503299 + 0.75 NA intron (NM_020690, intron 15 of 35) intron (NM_020690, intron 15 of 35) -44687 NM_003732 8637 Hs.594084 NM_003732 ENSG00000243056 EIF4EBP3 4E-BP3|4EBP3 eukaryotic translation initiation factor 4E binding protein 3 protein-coding 147-30 chr14 62455059 62455353 + 0.75 NA Intergenic Intergenic -315233 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 170.25-84 chrX 140715067 140715391 + 0.75 NA TTS (NR_028344) TTS (NR_028344) 5470 NR_028344 286411 Hs.317627 NR_028344 ENSG00000203930 LINC00632 ASINC long intergenic non-protein coding RNA 632 ncRNA 163.5-45 chr17 61211221 61211609 + 0.75 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 156289 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 259-2 chr11 83477486 83478276 + 0.75 NA intron (NM_001142699, intron 22 of 27) L2b|LINE|L2 -191474 NM_001286120 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 401.5-2 chr7 7191542 7192246 + 0.75 NA intron (NM_020156, intron 1 of 3) L1MB3|LINE|L1 9279 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 197.75-2 chr1 48983030 48983587 + 0.75 NA intron (NM_001323575, intron 5 of 12) intron (NM_001323575, intron 5 of 12) -206339 NM_001349794 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 159.25-48 chr3 36216453 36216860 + 0.75 NA Intergenic L1ME3A|LINE|L1 -163831 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 147.25-66 chr4 82363414 82363647 + 0.75 NA intron (NM_001003810, intron 1 of 6) intron (NM_001003810, intron 1 of 6) 10461 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 163-6 chr10 18439592 18439983 + 0.75 NA intron (NM_201593, intron 3 of 13) intron (NM_201593, intron 3 of 13) 39212 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 172.25-50 chr4 35774783 35775192 + 0.75 NA Intergenic Intergenic 468952 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 256.25-8 chr12 89935991 89936416 + 0.75 NA Intergenic Intergenic -11490 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 209-27 chr20 43422472 43422950 + 0.75 NA Intergenic L1MA5A|LINE|L1 -35185 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 158.25-108 chr8 83773501 83774035 + 0.75 NA Intergenic Intergenic 370010 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 150.75-49 chr20 13499855 13500186 + 0.75 NA intron (NR_136631, intron 10 of 13) L1PA17|LINE|L1 138912 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 217.5-21 chr17 16539108 16539677 + 0.75 NA Intergenic Intergenic 29812 NM_020653 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 161.25-33 chr18 62564690 62565206 + 0.75 NA intron (NR_126534, intron 10 of 14) intron (NR_126534, intron 10 of 14) 41923 NR_126534 54877 Hs.114191 NM_017742 ENSG00000141664 ZCCHC2 C18orf49 zinc finger CCHC-type containing 2 protein-coding 162.5-62 chr3 188149916 188150236 + 0.75 NA Intergenic Intergenic -3822 NM_001167672 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 181.75-7 chr1 194188398 194188739 + 0.75 NA Intergenic L2|LINE|L2 883823 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 301-9 chr7 88831454 88831914 + 0.75 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -35947 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 193-37 chr4 76015676 76016061 + 0.75 NA intron (NM_001130017, intron 1 of 9) AluJb|SINE|Alu 4688 NM_001130017 419 Hs.24976 NM_001179 ENSG00000156219 ART3 ARTC3 ADP-ribosyltransferase 3 protein-coding 198.75-35 chr3 84552822 84553183 + 0.75 NA Intergenic MLT1A|LTR|ERVL-MaLR 316573 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 178.25-70 chr8 78666168 78666718 + 0.75 NA intron (NM_001362969, intron 1 of 9) intron (NM_001362969, intron 1 of 9) 354 NR_156423 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 214-30 chr5 120889219 120889531 + 0.75 NA Intergenic L1MC1|LINE|L1 357911 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 157.75-84 chr4 157976470 157976866 + 0.75 NA Intergenic (CAT)n|Simple_repeat|Simple_repeat -194084 NR_147410 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 239.5-30 chr5 54392286 54392887 + 0.75 NA intron (NR_126379, intron 1 of 4) AluSx1|SINE|Alu -63113 NM_006308 8988 Hs.41707 NM_006308 ENSG00000169271 HSPB3 DHMN2C|HMN2C|HSPL27 heat shock protein family B (small) member 3 protein-coding 232.75-28 chr5 156682480 156682855 + 0.75 NA intron (NM_001128209, intron 6 of 7) intron (NM_001128209, intron 6 of 7) -167628 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 233-15 chr17 69322449 69323128 + 0.75 NA intron (NM_172232, intron 1 of 38) intron (NM_172232, intron 1 of 38) 4345 NM_172232 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 153.75-6 chr10 85443223 85443494 + 0.75 NA intron (NR_120670, intron 1 of 2) intron (NR_120670, intron 1 of 2) -6234 NR_120671 101929684 Hs.554059 NR_120671 ENSG00000230962 LINC01520 - long intergenic non-protein coding RNA 1520 ncRNA 149.5-6 chr1 220864636 220865043 + 0.75 NA intron (NR_046901, intron 1 of 2) L1M4|LINE|L1 -14604 NM_021958 3142 Hs.74870 NM_021958 ENSG00000136630 HLX HB24|HLX1 H2.0 like homeobox protein-coding 198.5-51 chr7 78356071 78356549 + 0.75 NA intron (NR_003680, intron 5 of 5) intron (NR_003680, intron 5 of 5) 9068 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 206-34 chr7 87690965 87691386 + 0.75 NA intron (NM_001134406, intron 2 of 9) intron (NM_001134406, intron 2 of 9) 22148 NM_001348945 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 158-46 chr22 25573594 25573877 + 0.75 NA intron (NM_001362778, intron 1 of 19) AluSq2|SINE|Alu 9060 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 182.75-58 chr5 107357476 107357850 + 0.75 NA Intergenic Intergenic 313274 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 159.5-84 chr7 13288250 13288714 + 0.75 NA Intergenic L1MA4|LINE|L1 600849 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 201-16 chr16 26926913 26927335 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR -139803 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 154-79 chr5 9969192 9969535 + 0.75 NA Intergenic L1M1|LINE|L1 -65539 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 186.25-18 chr17 67156125 67156503 + 0.75 NA intron (NM_001330447, intron 17 of 32) intron (NM_001330447, intron 17 of 32) -88462 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 233-8 chr12 43470103 43470738 + 0.75 NA intron (NM_025003, intron 7 of 38) intron (NM_025003, intron 7 of 38) 81783 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 163.25-27 chr14 51595466 51595892 + 0.75 NA intron (NR_047477, intron 1 of 3) intron (NR_047477, intron 1 of 3) 4273 NR_047477 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 218-26 chr8 51012220 51012655 + 0.75 NA Intergenic L1PA17|LINE|L1 797008 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 258.75-15 chr3 96927626 96928125 + 0.75 NA intron (NM_001080448, intron 2 of 17) THE1D|LTR|ERVL-MaLR 113281 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 172.5-3 chr1 110654798 110655081 + 0.75 NA non-coding (NR_109846, exon 3 of 3) non-coding (NR_109846, exon 3 of 3) 16836 NR_109846 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 205.75-35 chr2 157036267 157036750 + 0.75 NA Intergenic L1MEf|LINE|L1 -221197 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 272.25-5 chr12 42850358 42850872 + 0.75 NA Intergenic Intergenic 158399 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 175.75-41 chr22 26984856 26985257 + 0.75 NA Intergenic Intergenic 75462 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 262.5-10 chr14 48476211 48476814 + 0.75 NA Intergenic Intergenic -681498 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 211.5-32 chr20 14405695 14406189 + 0.75 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) -68275 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 264.5-26 chr8 137010875 137011474 + 0.75 NA Intergenic Ricksha_0|DNA|MULE-MuDR 402414 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 196-16 chr14 53815403 53815897 + 0.75 NA Intergenic Intergenic 132834 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 313-4 chr2 103383711 103384265 + 0.75 NA Intergenic ERVL-B4-int|LTR|ERVL -399559 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 175-6 chr10 54248511 54248833 + 0.75 NA intron (NM_001354411, intron 8 of 34) intron (NM_001354411, intron 8 of 34) -237558 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 192.5-46 chr5 32428111 32428462 + 0.75 NA intron (NM_016107, intron 2 of 19) AluSx|SINE|Alu 16454 NM_016107 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 263.25-22 chr5 133203233 133203606 + 0.75 NA intron (NM_015082, intron 14 of 15) intron (NM_015082, intron 14 of 15) 151406 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 184.25-61 chr6 140903111 140903468 + 0.75 NA Intergenic L1ME3D|LINE|L1 219475 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 156.25-32 chr17 52946201 52946537 + 0.75 NA Intergenic Intergenic -39136 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 189.5-43 chr3 110875938 110876326 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR 193827 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 325.5 chr11 13026406 13027234 + 0.75 NA Intergenic Intergenic 17504 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 147.5-25 chr14 38066201 38066570 + 0.75 NA Intergenic MER44B|DNA|TcMar-Tigger -141519 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 181.25-40 chr3 119483320 119483797 + 0.75 NA intron (NR_024265, intron 5 of 10) MIR|SINE|MIR 14595 NM_152305 56983 Hs.231750 NM_152305 ENSG00000163389 POGLUT1 C3orf9|CLP46|KDELCL1|KTELC1|LGMD2Z|LGMDR21|MDS010|MDSRP|Rumi|hCLP46 protein O-glucosyltransferase 1 protein-coding 153.5-49 chr2 100766488 100766779 + 0.75 NA Intergenic Intergenic -53506 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 173-34 chr17_GL000205v2_random 29930 30239 + 0.75 NA Intergenic CER|Satellite|Satellite 27882 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 192.5-38 chr3 165762832 165763129 + 0.75 NA Intergenic Intergenic 74443 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 266.75-16 chr5 53923786 53924356 + 0.75 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) 27528 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 162.25-6 chr10 6753369 6753609 + 0.75 NA Intergenic Intergenic 16107 NR_138480 108570035 Hs.568834 NR_138480 LINP1 - lncRNA in non-homologous end joining pathway 1 ncRNA 195.5-55 chr5 56292467 56292847 + 0.75 NA Intergenic L1MC4|LINE|L1 -59327 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 146.75-92 chr5 139523466 139523800 + 0.75 NA Intergenic Intergenic -37533 NM_181838 7322 Hs.108332 NM_003339 ENSG00000131508 UBE2D2 E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B ubiquitin conjugating enzyme E2 D2 protein-coding 247-21 chr7 1681329 1681777 + 0.75 NA Intergenic AluSz|SINE|Alu -6566 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding 160-79 chr7 118672066 118672414 + 0.75 NA Intergenic Intergenic 447536 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 261.25-17 chr8 85951863 85952380 + 0.75 NA Intergenic Intergenic 117547 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 213.5-31 chr3 138397667 138398232 + 0.75 NA intron (NM_012219, intron 3 of 5) L1ME4c|LINE|L1 -36624 NR_136409 83850 Hs.477711 NM_031913 ENSG00000158220 ESYT3 CHR3SYT|E-Syt3|FAM62C extended synaptotagmin 3 protein-coding 179-56 chr6 141174031 141174340 + 0.75 NA Intergenic Intergenic 490371 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 191.25-6 chr1 102942455 102942907 + 0.75 NA intron (NM_001854, intron 42 of 66) intron (NM_001854, intron 42 of 66) 165815 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 246.25-11 chr11 49945378 49945752 + 0.75 NA Intergenic L1PA4|LINE|L1 -6826 NM_001001955 283092 Hs.553668 NM_001001955 ENSG00000258817 OR4C13 - olfactory receptor family 4 subfamily C member 13 protein-coding 190.25-57 chr8 83344332 83344730 + 0.75 NA Intergenic Intergenic -59227 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 146-37 chr18 42896518 42896818 + 0.75 NA intron (NM_002930, intron 4 of 4) intron (NM_002930, intron 4 of 4) 219017 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 154.5-5 chr1 93081342 93081656 + 0.75 NA intron (NM_001164393, intron 1 of 12) intron (NM_001164393, intron 1 of 12) 2216 NM_007358 22823 Hs.31016 NM_007358 ENSG00000143033 MTF2 M96|PCL2|TDRD19A|dJ976O13.2 metal response element binding transcription factor 2 protein-coding 178.25-51 chr5 6107494 6107973 + 0.75 NA Intergenic AluSx|SINE|Alu 229559 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 165-52 chr22 24549511 24549950 + 0.75 NA intron (NM_001284252, intron 1 of 5) AluSx|SINE|Alu 5408 NM_001284256 83606 Hs.9850 NM_031444 ENSG00000138867 GUCD1 C22orf13|LLN4 guanylyl cyclase domain containing 1 protein-coding 225-11 chr21 29704177 29704659 + 0.75 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) -43757 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 254.75-3 chr1 153661820 153662300 + 0.75 NA TTS (NR_052020) TTS (NR_052020) 3357 NM_012437 23557 Hs.32018 NM_012437 ENSG00000143553 SNAPIN BLOC1S7|BLOS7|BORCS3|SNAPAP SNAP associated protein protein-coding 171.5-34 chr16 52618409 52618650 + 0.75 NA Intergenic (ATCT)n|Simple_repeat|Simple_repeat -11554 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 173.75-9 chr10 76992428 76992816 + 0.75 NA intron (NM_001322838, intron 19 of 29) intron (NM_001322838, intron 19 of 29) 104578 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 229.5-2 chr1 222609810 222610457 + 0.75 NA Intergenic L1ME1|LINE|L1 -7964 NM_198551 375056 Hs.118474 NM_198551 ENSG00000154305 MIA3 ARNT|D320|TANGO|TANGO1|UNQ6077 MIA SH3 domain ER export factor 3 protein-coding 276.75-3 chr16 51084263 51084894 + 0.75 NA intron (NR_039672, intron 2 of 6) intron (NR_039672, intron 2 of 6) 66019 NM_001127892 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 167.75 chr1 33547784 33548127 + 0.75 NA intron (NM_052896, intron 55 of 69) MSTA|LTR|ERVL-MaLR 75310 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 249-13 chr6 140325128 140325603 + 0.75 NA Intergenic MIR|SINE|MIR 120113 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 176.5-63 chr4 177792507 177792904 + 0.75 NA intron (NR_028342, intron 2 of 5) intron (NR_028342, intron 2 of 5) 63948 NR_028342 285501 Hs.722466 NM_001085490 ENSG00000231171 LINC01098 - long intergenic non-protein coding RNA 1098 ncRNA 231-11 chr2 140005157 140005519 + 0.75 NA Intergenic L1MA4|LINE|L1 581347 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 194.75-7 chr10 126831847 126832337 + 0.75 NA Intergenic L1MA5A|LINE|L1 -73317 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 166.5-4 chr10 17010634 17011029 + 0.75 NA intron (NM_001081, intron 28 of 66) intron (NM_001081, intron 28 of 66) 118986 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 207.75-12 chr13 21574162 21574532 + 0.75 NA intron (NM_152726, intron 1 of 11) intron (NM_152726, intron 1 of 11) 29823 NM_152726 221154 Hs.412103 NM_152726 ENSG00000165487 MICU2 1110008L20Rik|EFHA1 mitochondrial calcium uptake 2 protein-coding 197.75-70 chr9 76035297 76035883 + 0.75 NA intron (NR_120409, intron 5 of 19) intron (NR_120409, intron 5 of 19) 144917 NM_006200 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 193.25-26 chr2 33953080 33953410 + 0.75 NA intron (NR_126403, intron 4 of 5) L1MB3|LINE|L1 -113981 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 229.25-3 chr1 186240816 186241316 + 0.75 NA Intergenic Intergenic -55207 NM_001127710 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 160-41 chr2 67969307 67969595 + 0.75 NA Intergenic L1ME3G|LINE|L1 93553 NM_001190265 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 271.5-18 chr9 102529204 102529796 + 0.75 NA intron (NR_103830, intron 1 of 4) intron (NR_103830, intron 1 of 4) 9863 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 203-10 chr11 31623862 31624317 + 0.75 NA intron (NM_001288725, intron 5 of 10) L1MA8|LINE|L1 114322 NM_001288725 26610 Hs.175534 NM_019040 ENSG00000109911 ELP4 AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 195.75 chr1 51799064 51799343 + 0.75 NA intron (NM_001101662, intron 21 of 30) L1PA6|LINE|L1 37199 NR_031580 100313892 NR_031580 ENSG00000283899 MIR761 hsa-mir-761 microRNA 761 ncRNA 149-92 chr7 15560788 15561157 + 0.75 NA intron (NM_001004320, intron 1 of 12) intron (NM_001004320, intron 1 of 12) 1043 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 176.75-46 chr22 22209905 22210452 + 0.75 NA Intergenic AluYc|SINE|Alu -34608 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 259-3 chr14 29448083 29448714 + 0.75 NA Intergenic Intergenic 478698 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 219.25-25 chr2 190359004 190359678 + 0.75 NA intron (NM_001128928, intron 2 of 6) intron (NM_001128928, intron 2 of 6) 15752 NM_001128928 3628 Hs.32309 NM_002194 ENSG00000151689 INPP1 - inositol polyphosphate-1-phosphatase protein-coding 188.75-50 chr4 182183881 182184236 + 0.75 NA Intergenic Intergenic 14765 NR_031640 100302270 NR_031640 ENSG00000221227 MIR1305 MIRN1305|hsa-mir-1305|mir-1305 microRNA 1305 ncRNA 163.5-21 chr12 22331308 22331646 + 0.75 NA intron (NM_003034, intron 1 of 4) intron (NM_003034, intron 1 of 4) 3237 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 159.75-49 chr2 132908062 132908470 + 0.75 NA intron (NM_207481, intron 8 of 17) L3|LINE|CR1 -7291 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 299-5 chr3 156630086 156630621 + 0.75 NA Intergenic Intergenic -44237 NM_015508 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 187-17 chr18 71673324 71673829 + 0.75 NA Intergenic Intergenic -94620 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 236.5-38 chr8 111210048 111210638 + 0.75 NA intron (NR_125418, intron 1 of 3) MER6|DNA|TcMar-Tigger 25860 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 227-17 chr7 91955145 91955717 + 0.75 NA intron (NM_147185, intron 1 of 49) L1ME3E|LINE|L1 14556 NM_005751 10142 Hs.651221 NM_005751 ENSG00000127914 AKAP9 AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO A-kinase anchoring protein 9 protein-coding 186.25-41 chr4 61487178 61487564 + 0.75 NA intron (NM_001371343, intron 2 of 23) MIR|SINE|MIR 285199 NM_001371342 287.5-10 chr2 39168857 39169531 + 0.75 NA intron (NR_144521, intron 10 of 10) intron (NR_144521, intron 10 of 10) -48731 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 261-9 chr15 96222739 96223274 + 0.75 NA intron (NR_125738, intron 2 of 4) intron (NR_125738, intron 2 of 4) -95165 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 273.75 chr11 28435994 28436385 + 0.75 NA Intergenic MLT1H-int|LTR|ERVL-MaLR 41359 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 269.5-5 chr11 38122963 38123388 + 0.75 NA Intergenic MLT1H2|LTR|ERVL-MaLR 184574 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 234-4 chr11 20900557 20901016 + 0.75 NA intron (NM_201551, intron 5 of 18) L1ME3C|LINE|L1 231200 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 207.25-53 chr8 136594844 136595303 + 0.75 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 64275 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 183.25-61 chr5 39769854 39770170 + 0.75 NA Intergenic Intergenic 249581 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 208-32 chr6 56998244 56998605 + 0.75 NA intron (NM_152731, intron 3 of 6) MamRep1527|LTR|LTR 43317 NM_152731 221336 Hs.582993 NM_152731 ENSG00000151917 BEND6 C6orf65 BEN domain containing 6 protein-coding 172.5-50 chr3 154831864 154832391 + 0.75 NA Intergenic Intergenic -191997 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 214.5-18 chr18 33542209 33542593 + 0.75 NA Intergenic AluSx|SINE|Alu -35818 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 210.5-24 chr21 15254204 15254838 + 0.75 NA Intergenic Intergenic -189521 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 266-2 chr1 214994615 214995234 + 0.75 NA Intergenic Intergenic -10618 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 175.5-74 chr4 170995641 170995890 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL -44837 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 156.75-44 chr18 60342162 60342448 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger 30470 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 190-18 chr17 80870325 80870628 + 0.75 NA intron (NM_001163034, intron 13 of 29) intron (NM_001163034, intron 13 of 29) -64844 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 211.5-45 chr7 88431978 88432524 + 0.75 NA Intergenic Intergenic -125357 NM_024636 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 191.25-58 chr5 172301455 172301898 + 0.75 NA Intergenic AluSz6|SINE|Alu 16079 NR_130933 100288254 Hs.531911 NM_001007542 LOC100288254 - uncharacterized LOC100288254 ncRNA 199.25-2 chr10 62453497 62453899 + 0.75 NA intron (NM_199451, intron 3 of 7) L1PB4|LINE|L1 -66750 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 164.25-38 chr18 13996466 13996856 + 0.75 NA Intergenic Intergenic -80954 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 209.5-31 chr2 59797658 59798088 + 0.75 NA Intergenic Intergenic 580165 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 252.5-4 chr10 68448502 68448932 + 0.75 NA intron (NM_001080449, intron 6 of 20) intron (NM_001080449, intron 6 of 20) 23256 NM_001080449 1763 Hs.532446 NM_001080449 ENSG00000138346 DNA2 DNA2L|hDNA2 DNA replication helicase/nuclease 2 protein-coding 178.75-22 chr16 76367065 76367480 + 0.75 NA intron (NR_136213, intron 3 of 23) intron (NR_136213, intron 3 of 23) 57420 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 179-18 chr17 53947781 53948103 + 0.75 NA Intergenic Charlie1a|DNA|hAT-Charlie 125015 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 251.75-7 chr13 86913515 86914124 + 0.75 NA intron (NR_132371, intron 1 of 1) THE1B-int|LTR|ERVL-MaLR 1899 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 184.5-11 chr1 186855734 186856095 + 0.75 NA intron (NM_024420, intron 2 of 17) L1ME3|LINE|L1 26965 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 170.5-26 chr15 81486813 81487142 + 0.75 NA Intergenic Intergenic -112764 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 223.25-8 chr17 52213819 52214280 + 0.75 NA Intergenic L2b|LINE|L2 -54032 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 202.75-4 chr1 99269428 99269940 + 0.75 NA intron (NM_014839, intron 1 of 6) intron (NM_014839, intron 1 of 6) 5392 NM_001166252 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 174.25-8 chr10 39194817 39195128 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 498376 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 187-11 chr12 66139720 66140203 + 0.75 NA intron (NM_016056, intron 5 of 6) L1MEc|LINE|L1 9210 NR_125724 103625681 Hs.504820 NR_125724 ENSG00000239335 LLPH-DT LLPH-AS1 LLPH divergent transcript ncRNA 233.25 chr1 27921591 27921961 + 0.75 NA Intergenic Arthur1A|DNA|hAT-Tip100 -6979 NM_001286076 6118 Hs.79411 NM_002946 ENSG00000117748 RPA2 REPA2|RP-A p32|RP-A p34|RPA32 replication protein A2 protein-coding 174.25-67 chr8 62559138 62559425 + 0.75 NA intron (NM_001304533, intron 1 of 6) L1MDa|LINE|L1 310427 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 157.75-78 chr4 128386186 128386446 + 0.75 NA Intergenic Intergenic -41700 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 290-3 chr3 3344250 3344685 + 0.75 NA Intergenic L2a|LINE|L2 -164750 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 208-16 chr2 67164400 67164944 + 0.75 NA intron (NR_038844, intron 3 of 7) intron (NR_038844, intron 3 of 7) -48736 NR_110568 101927661 Hs.580508 NR_110568 ENSG00000235885 LOC101927661 - uncharacterized LOC101927661 ncRNA 152.75-58 chr20 63408778 63409056 + 0.75 NA intron (NM_172107, intron 15 of 16) intron (NM_172107, intron 15 of 16) -47521 NM_000744 1137 Hs.10734 NM_000744 ENSG00000101204 CHRNA4 BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4 cholinergic receptor nicotinic alpha 4 subunit protein-coding 155.25-32 chr16 82766085 82766419 + 0.75 NA intron (NM_001220488, intron 2 of 14) intron (NM_001220488, intron 2 of 14) -7067 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 159.75-6 chr1 118630313 118630646 + 0.75 NA Intergenic L1PB1|LINE|L1 357864 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 170.75-64 chr7 29878838 29879190 + 0.75 NA exon (NM_001080529, exon 4 of 9) exon (NM_001080529, exon 4 of 9) 72460 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 191.5-43 chr5 19140844 19141167 + 0.75 NA Intergenic L1MEg|LINE|L1 745267 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 174.25-73 chr8 125313717 125314145 + 0.75 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) -116427 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 325.5-3 chr18 37938437 37939099 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR 281633 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 185.5-65 chr6 64046865 64047362 + 0.75 NA intron (NM_001292009, intron 33 of 43) intron (NM_001292009, intron 33 of 43) 240277 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 146.5-93 chr6 53741668 53742048 + 0.75 NA Intergenic MLT1H2-int|LTR|ERVL-MaLR -53147 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 158.5 chr1 51745185 51745601 + 0.75 NA intron (NM_001350209, intron 4 of 23) intron (NM_001350209, intron 4 of 23) 15543 NM_148905 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 189-9 chr10 78915789 78916306 + 0.75 NA Intergenic MIRc|SINE|MIR 151401 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 173.75-42 chr22 28017943 28018227 + 0.75 NA intron (NM_001145418, intron 13 of 22) intron (NM_001145418, intron 13 of 22) -97473 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 165.25-65 chr8 8326871 8327311 + 0.75 NA intron (NR_163138, intron 6 of 6) L2a|LINE|L2 59153 NM_001369759 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 165-19 chr12 39947125 39947525 + 0.75 NA intron (NM_052885, intron 4 of 9) intron (NM_052885, intron 4 of 9) 158756 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 152.5-28 chr14 73884442 73884875 + 0.75 NA non-coding (NR_163921, exon 10 of 10) non-coding (NR_163921, exon 10 of 10) -2201 NR_040251 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 364.5-4 chr8 86923283 86924276 + 0.75 NA intron (NM_173538, intron 3 of 10) intron (NM_173538, intron 3 of 10) 57364 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 263.5-6 chr11 116297912 116298593 + 0.75 NA Intergenic Charlie10|DNA|hAT-Charlie -341170 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 170-41 chr3 132322175 132322482 + 0.75 NA intron (NM_001292037, intron 1 of 8) intron (NM_001292037, intron 1 of 8) 4921 NM_001292037 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 272.75-13 chr2 229332868 229333436 + 0.75 NA Intergenic L2c|LINE|L2 -61865 NM_017933 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 223.5-11 chr11 102954145 102954818 + 0.75 NA exon (NM_002427, exon 3 of 10) exon (NM_002427, exon 3 of 10) 1251 NM_002427 4322 Hs.2936 NM_002427 ENSG00000137745 MMP13 CLG3|MANDP1|MDST|MMP-13 matrix metallopeptidase 13 protein-coding 184.75-18 chr12 32852196 32852633 + 0.75 NA intron (NM_001005242, intron 4 of 12) intron (NM_001005242, intron 4 of 12) 44432 NM_004572 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 164-69 chr6 1596580 1597062 + 0.75 NA Intergenic Intergenic -8710 NR_125804 101927703 Hs.607964 NR_125804 FOXCUT LINC01379|TCONS_00011636 FOXC1 upstream transcript ncRNA 158.5-92 chr7 3930512 3930894 + 0.75 NA intron (NM_152744, intron 5 of 44) AluSc8|SINE|Alu -198982 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 165-8 chr10 54870013 54870322 + 0.75 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) -68876 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 165.5-40 chr18 10312380 10312703 + 0.75 NA Intergenic Intergenic 101829 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 196.25-30 chr2 78180202 78180608 + 0.75 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) 91675 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 181.5-41 chr2 184516592 184517124 + 0.75 NA Intergenic Intergenic -81671 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 178.75-56 chr5 109207337 109207736 + 0.75 NA Intergenic L1ME1|LINE|L1 118833 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 225.5-8 chr10 111435118 111435637 + 0.75 NA Intergenic Intergenic 321086 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 179.25-80 chr9 28331829 28332206 + 0.75 NA intron (NM_001354574, intron 4 of 5) intron (NM_001354574, intron 4 of 5) 387288 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 260-2 chr10 77365877 77366402 + 0.75 NA intron (NR_126365, intron 3 of 5) (TTCTCT)n|Simple_repeat|Simple_repeat 15267 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 270.25-11 chr2 170134275 170134831 + 0.75 NA Intergenic L1MA4|LINE|L1 -43594 NM_138995 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 202.75-18 chr13 87513219 87513691 + 0.75 NA intron (NR_033829, intron 1 of 5) intron (NR_033829, intron 1 of 5) 105285 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 155.5-88 chr6 53129957 53130237 + 0.75 NA intron (NM_003643, intron 5 of 5) intron (NM_003643, intron 5 of 5) 18744 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 233.5-3 chr12 112464792 112465366 + 0.75 NA intron (NM_001330437, intron 6 of 15) intron (NM_001330437, intron 6 of 15) 46132 NM_080601 5781 Hs.506852 NM_002834 ENSG00000179295 PTPN11 BPTP3|CFC|JMML|METCDS|NS1|PTP-1D|PTP2C|SH-PTP2|SH-PTP3|SHP2 protein tyrosine phosphatase non-receptor type 11 protein-coding 157.25-33 chr16 7254462 7254787 + 0.75 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -78221 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 192.25-42 chr3 94046570 94046889 + 0.75 NA intron (NR_135621, intron 6 of 8) intron (NR_135621, intron 6 of 8) 16187 NM_176815 200895 Hs.718516 NM_176815 ENSG00000178700 DHFR2 DHFRL1|DHFRP4 dihydrofolate reductase 2 protein-coding 303.75-12 chr8 140893641 140894224 + 0.75 NA intron (NM_001352700, intron 1 of 34) L1MC5a|LINE|L1 107072 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 164.25-18 chr10 82755863 82756126 + 0.75 NA intron (NR_163252, intron 3 of 8) L3|LINE|CR1 -523074 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 173.5-43 chr21 21852195 21852618 + 0.75 NA Intergenic Intergenic 105421 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 219.5-12 chr2 23734041 23734591 + 0.75 NA Intergenic AluSz|SINE|Alu 192807 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 151.75-119 chr9 30621819 30622131 + 0.75 NA Intergenic Intergenic -213521 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 251.75 chr1 112947297 112947750 + 0.75 NA intron (NM_003051, intron 1 of 4).2 intron (NM_003051, intron 1 of 4).2 8540 NM_001166496 6566 Hs.75231 NM_003051 ENSG00000155380 SLC16A1 HHF7|MCT|MCT1|MCT1D solute carrier family 16 member 1 protein-coding 221.25-21 chr3 83777886 83778246 + 0.75 NA Intergenic L1ME4b|LINE|L1 1091509 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 182-43 chr4 130328502 130328980 + 0.75 NA Intergenic Intergenic -47620 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 170-57 chr7 25873808 25874229 + 0.75 NA Intergenic MER3|DNA|hAT-Charlie 75968 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 220.75-28 chr4 24391472 24391906 + 0.75 NA intron (NM_001330752, intron 1 of 13) intron (NM_001330752, intron 1 of 13) 81216 NR_148983 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 374 chr11 81370453 81371181 + 0.75 NA Intergenic Intergenic 520019 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 150.5-77 chr3 96592941 96593262 + 0.75 NA Intergenic Intergenic -221493 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 159.75-76 chr4 140595906 140596258 + 0.75 NA Intergenic L1PB2|LINE|L1 -27121 NM_021833 7350 Hs.249211 NM_021833 ENSG00000109424 UCP1 SLC25A7|UCP uncoupling protein 1 protein-coding 276.75-5 chr2 10093778 10094242 + 0.75 NA Intergenic MIR|SINE|MIR -13599 NM_001037160 192668 Hs.27092 NM_001037160 ENSG00000205795 CYS1 - cystin 1 protein-coding 229.75-37 chr9 74720346 74720794 + 0.75 NA Intergenic Intergenic 105036 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 156.5-11 chr1 112449635 112450148 + 0.75 NA intron (NM_018704, intron 4 of 5) intron (NM_018704, intron 4 of 5) 11942 NR_036210 100422976 NR_036210 ENSG00000283296 MIR4256 - microRNA 4256 ncRNA 186.5-61 chr5 108004017 108004460 + 0.75 NA intron (NM_001163315, intron 7 of 8) intron (NM_001163315, intron 7 of 8) -333301 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 164.5-13 chr12 13055046 13055490 + 0.75 NA intron (NM_020853, intron 1 of 12) intron (NM_020853, intron 1 of 12) 10887 NM_020853 57613 Hs.132660 NM_020853 ENSG00000084444 FAM234B KIAA1467 family with sequence similarity 234 member B protein-coding 196.75-3 chr1 181143635 181143927 + 0.75 NA Intergenic L2|LINE|L2 -30703 NR_125966 101928973 Hs.637822 NR_125966 ENSG00000237292 LINC01732 - long intergenic non-protein coding RNA 1732 ncRNA 324-2 chr10 58007371 58007969 + 0.75 NA Intergenic Intergenic 260224 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 283.5-2 chr14 71171881 71172385 + 0.75 NA Intergenic MER75|DNA|PiggyBac -148343 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 251.5-4 chr10 73317456 73317999 + 0.75 NA intron (NM_001367801, intron 10 of 27) MSTB|LTR|ERVL-MaLR 41027 NM_001350933 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 196-14 chr13 87679793 87680258 + 0.75 NA TTS (NM_015567) TTS (NM_015567) 7410 NM_015567 26050 Hs.591208 NM_015567 ENSG00000165300 SLITRK5 LRRC11|bA364G4.2 SLIT and NTRK like family member 5 protein-coding 287.5-14 chr4 19012659 19013226 + 0.75 NA Intergenic Intergenic -991067 NM_001365659 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 216.25-14 chr15 68564629 68565004 + 0.75 NA intron (NM_001324014, intron 2 of 12) Zaphod3|DNA|hAT-Tip100 -14177 NM_006091 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 225.75-10 chr15 27178304 27178690 + 0.75 NA intron (NM_001270873, intron 3 of 5) MER39B|LTR|ERV1 -17178 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 225.75-28 chr6 138877596 138878189 + 0.75 NA intron (NM_001077706, intron 14 of 21) AluJb|SINE|Alu 81781 NM_001077706 345930 Hs.660603 NM_001077706 ENSG00000203734 ECT2L ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5 epithelial cell transforming 2 like protein-coding 157-91 chr8 34931529 34931830 + 0.75 NA Intergenic Intergenic 147758 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 257.25-18 chr3 162672850 162673429 + 0.75 NA Intergenic L1MDa|LINE|L1 630162 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 261.5-17 chr3 168649690 168650323 + 0.75 NA intron (NR_021485, intron 5 of 15) intron (NR_021485, intron 5 of 15) 98152 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 162.25-62 chr4 95050238 95050677 + 0.75 NA intron (NM_001256792, intron 1 of 10) intron (NM_001256792, intron 1 of 10) -1220 NM_001256793 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 153-34 chr19 28568163 28568586 + 0.75 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) -38314 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 174.25-3 chr1 68478550 68479030 + 0.75 NA intron (NM_001114120, intron 10 of 11) intron (NM_001114120, intron 10 of 11) -17886 NR_110671 101927220 Hs.382856 NR_110671 ENSG00000234264 DEPDC1-AS1 - DEPDC1 antisense RNA 1 ncRNA 187.5-42 chr3 24308334 24308691 + 0.75 NA intron (NM_001354710, intron 2 of 10) intron (NM_001354710, intron 2 of 10) 157188 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 151.75-115 chr9 15928216 15928609 + 0.75 NA intron (NM_001355547, intron 24 of 24) L2c|LINE|L2 324695 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 181.5-6 chr1 202763813 202764234 + 0.75 NA intron (NM_001314042, intron 7 of 27) (TTTTAC)n|Simple_repeat|Simple_repeat 45447 NM_001347591 10765 Hs.18891 NM_006618 ENSG00000117139 KDM5B CT31|JARID1B|MRT65|PLU-1|PLU1|PPP1R98|PUT1|RBBP2H1A|RBP2-H1 lysine demethylase 5B protein-coding 172.75-70 chr8 118665154 118665683 + 0.75 NA intron (NR_038210, intron 2 of 4) intron (NR_038210, intron 2 of 4) -43455 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 217-23 chr5 42200868 42201390 + 0.75 NA Intergenic Intergenic -25784 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 197.25-10 chr10 54655820 54656266 + 0.75 NA TTS (NR_134503) TTS (NR_134503) -48086 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 225-12 chr3 123747245 123747684 + 0.75 NA intron (NM_001321309, intron 4 of 32) MER5A|DNA|hAT-Charlie 57820 NR_046629 100873940 Hs.667316 NR_046629 ENSG00000250174 MYLK-AS2 - MYLK antisense RNA 2 ncRNA 199.5-29 chr22 45483613 45484157 + 0.75 NA Intergenic MER83B-int|LTR|ERV1 -18998 NM_006485 2192 Hs.24601 NM_001996 ENSG00000077942 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 176.75-81 chr7 12811454 12811837 + 0.75 NA Intergenic L1MB8|LINE|L1 124012 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 214-5 chr1 216293313 216293754 + 0.75 NA intron (NM_206933, intron 9 of 71) Tigger6a|DNA|TcMar-Tigger 129863 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 163.75-42 chr3 136620201 136620437 + 0.75 NA intron (NM_005862, intron 3 of 33) intron (NM_005862, intron 3 of 33) 132059 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 210.5-41 chr6 168568779 168569264 + 0.75 NA intron (NM_001166412, intron 7 of 12) L1MC2|LINE|L1 127837 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 169.5-96 chr8 133001919 133002360 + 0.75 NA intron (NM_003235, intron 35 of 47) intron (NM_003235, intron 35 of 47) 44442 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 237-11 chr4 65028401 65028948 + 0.75 NA Intergenic Intergenic -24174 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 251.25-24 chr4 154179846 154180267 + 0.75 NA Intergenic Intergenic 311743 NM_001358235 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 148-32 chr15 70299147 70299556 + 0.75 NA Intergenic MER63C|DNA|hAT-Blackjack -201434 NM_020908 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 159.75-102 chr9 70745024 70745510 + 0.75 NA intron (NM_001366143, intron 8 of 25) MIR|SINE|MIR 64817 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 146.5-78 chr4 76040160 76040427 + 0.75 NA intron (NM_001130017, intron 1 of 9) AluSz|SINE|Alu -4223 NM_001302123 6373 Hs.632592 NM_005409 ENSG00000169248 CXCL11 H174|I-TAC|IP-9|IP9|SCYB11|SCYB9B|b-R1 C-X-C motif chemokine ligand 11 protein-coding 183-64 chrX 74362689 74362969 + 0.75 NA Intergenic L1MA8|LINE|L1 58649 NM_203303 389874 Hs.157231 NM_203303 ENSG00000187969 ZCCHC13 CNBP2|ZNF9L zinc finger CCHC-type containing 13 protein-coding 200.75-24 chr2 4576238 4576585 + 0.75 NA Intergenic MER5B|DNA|hAT-Charlie 79811 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 160.5-60 chr3 19066721 19067006 + 0.75 NA Intergenic Intergenic -81647 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 201.25-37 chr4 73151519 73151899 + 0.75 NA intron (NM_032217, intron 6 of 33) intron (NM_032217, intron 6 of 33) 71348 NM_001286771 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 178.75-36 chr21 24889567 24890017 + 0.75 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 49242 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 155-36 chr17 49543259 49543539 + 0.75 NA intron (NR_103773, intron 1 of 2) L1MC3|LINE|L1 30665 NR_103773 100288866 Hs.720309 NR_103773 ENSG00000249906 LOC100288866 - uncharacterized LOC100288866 ncRNA 170.25-52 chr3 196887204 196887482 + 0.75 NA intron (NM_152699, intron 2 of 9) AluSx1|SINE|Alu 19423 NM_152699 205564 Hs.240770 NM_152699 ENSG00000119231 SENP5 - SUMO specific peptidase 5 protein-coding 327.75-5 chr3 78169622 78170362 + 0.75 NA Intergenic Intergenic -121029 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 159.75-54 chr20 55012307 55012749 + 0.75 NA Intergenic MLT1F2|LTR|ERVL-MaLR -410515 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 221-4 chr1 195172266 195172660 + 0.75 NA Intergenic Intergenic 916252 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 256.5 chr10 16965719 16966173 + 0.75 NA intron (NM_001081, intron 31 of 66) MIRb|SINE|MIR -148492 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 186.75-36 chr16 80987593 80988009 + 0.75 NA intron (NR_147842, intron 1 of 2) intron (NR_147842, intron 1 of 2) 9875 NM_001351973 56942 Hs.55028 NM_020188 ENSG00000103121 CMC2 2310061C15Rik|C16orf61|DC13 C-X9-C motif containing 2 protein-coding 176.5-92 chr8 120083832 120084327 + 0.75 NA Intergenic Intergenic -41023 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 223.5-41 chr7 62733611 62733971 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 570265 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 155-12 chr10 102272566 102272898 + 0.75 NA intron (NM_001199378, intron 3 of 39) L1MC5a|LINE|L1 27200 NM_004193 8729 Hs.290243 NM_004193 ENSG00000107862 GBF1 ARF1GEF golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein-coding 188-34 chr2 171005658 171006084 + 0.75 NA intron (NM_001136555, intron 16 of 18) intron (NM_001136555, intron 16 of 18) 61102 NM_001136555 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 286.5-2 chr10 11976381 11976844 + 0.75 NA intron (NM_080599, intron 9 of 21) intron (NM_080599, intron 9 of 21) 66197 NM_015542 26019 Hs.370689 NM_015542 ENSG00000151461 UPF2 HUPF2|RENT2|smg-3 UPF2 regulator of nonsense mediated mRNA decay protein-coding 148.75-78 chr5 98925105 98925370 + 0.75 NA intron (NM_001364113, intron 2 of 36) MIR|SINE|MIR 1297 NM_001270 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 152.5-99 chr6 148774109 148774515 + 0.75 NA intron (NM_005715, intron 1 of 7) Charlie2b|DNA|hAT-Charlie 27282 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 255.25-16 chr3 33701586 33702048 + 0.75 NA intron (NM_001365634, intron 1 of 35) L1MCc|LINE|L1 16437 NM_001365633 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 255.75-12 chr3 118255007 118255584 + 0.75 NA Intergenic Intergenic -386473 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 157.75-24 chr11 114776945 114777383 + 0.75 NA Intergenic MER119|DNA|hAT-Charlie 98637 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 198.25-47 chr5 161699115 161699561 + 0.75 NA intron (NM_000811, intron 8 of 8) intron (NM_000811, intron 8 of 8) 13617 NM_000811 2559 Hs.90791 NM_000811 ENSG00000145863 GABRA6 - gamma-aminobutyric acid type A receptor alpha6 subunit protein-coding 206-19 chr20 383325 383796 + 0.75 NA intron (NM_001301201, intron 2 of 4) AluJo|SINE|Alu 2217 NM_001301190 57761 Hs.516826 NM_021158 ENSG00000101255 TRIB3 C20orf97|NIPK|SINK|SKIP3|TRB3 tribbles pseudokinase 3 protein-coding 237.75-22 chr5 40241839 40242215 + 0.75 NA Intergenic Intergenic 189736 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 196.5-63 chr9 28211393 28211899 + 0.75 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 507659 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 162.25-93 chr8 41372383 41372803 + 0.75 NA Intergenic Intergenic -54062 NR_145746 109616980 NR_145746 ENSG00000238936 SNORD65B - small nucleolar RNA, C/D box 65B snoRNA 197.5-26 chr17 59748715 59749065 + 0.75 NA intron (NM_001329401, intron 4 of 9) intron (NM_001329401, intron 4 of 9) 41236 NM_001329397 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 210.5-44 chr8 10741364 10741754 + 0.75 NA intron (NR_146188, intron 1 of 2) L1MCa|LINE|L1 -11048 NM_031439 83595 Hs.709543 NM_031439 ENSG00000171056 SOX7 - SRY-box transcription factor 7 protein-coding 151.75-103 chr8 10914208 10914510 + 0.75 NA intron (NM_173683, intron 2 of 2) intron (NM_173683, intron 2 of 2) 74333 NR_125432 101929229 Hs.129800 NR_125432 LOC101929229 - uncharacterized LOC101929229 ncRNA 163.25-24 chr12 115329888 115330147 + 0.75 NA Intergenic L1MB3|LINE|L1 -645842 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 166.5-42 chr2 163942653 163942976 + 0.75 NA Intergenic Intergenic -206806 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 150.5-58 chr2 50572130 50572543 + 0.75 NA intron (NM_001330093, intron 8 of 22) intron (NM_001330093, intron 8 of 22) 123926 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 221-9 chr12 26394096 26394563 + 0.75 NA intron (NM_002223, intron 54 of 56) intron (NM_002223, intron 54 of 56) 198756 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 193-21 chr16 6903154 6903691 + 0.75 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 129613 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 179.75-60 chr7 20452568 20453024 + 0.75 NA Intergenic Intergenic -121034 NR_110120 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 165.25-20 chr18 3552611 3552935 + 0.75 NA intron (NM_001242762, intron 6 of 9) intron (NM_001242762, intron 6 of 9) -41341 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 179.75-29 chr2 176000512 176000864 + 0.75 NA intron (NR_130941, intron 1 of 14) intron (NR_130941, intron 1 of 14) 1579 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 174-5 chr1 188875496 188875776 + 0.75 NA Intergenic Intergenic 1432008 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 178.5-48 chr3 118371270 118371533 + 0.75 NA Intergenic Intergenic -270367 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 307.5-12 chr8 91292023 91292798 + 0.75 NA intron (NM_134266, intron 3 of 18) intron (NM_134266, intron 3 of 18) 43091 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 172.25-27 chr18 7763801 7764076 + 0.75 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 196622 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 191.75-45 chr4 108944047 108944380 + 0.75 NA intron (NM_001256074, intron 6 of 31) intron (NM_001256074, intron 6 of 31) -181160 NM_001331031 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 170.75-35 chr2 187260284 187260602 + 0.75 NA Intergenic L1PA11|LINE|L1 187809 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 239.5-14 chr14 42845750 42846237 + 0.75 NA Intergenic AluSq2|SINE|Alu 1239137 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 155-5 chr1 93543182 93543503 + 0.75 NA intron (NM_001164473, intron 11 of 16) intron (NM_001164473, intron 11 of 16) 41820 NM_001308251 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 AND-34|NSP2|SH2D3B BCAR3 adaptor protein, NSP family member protein-coding 175.25-41 chr3 88996445 88996714 + 0.75 NA Intergenic Intergenic -111042 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 156.5-49 chr2 46010863 46011145 + 0.75 NA intron (NM_005400, intron 10 of 14) intron (NM_005400, intron 10 of 14) -286403 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 148-6 chr1 116360544 116360902 + 0.75 NA Intergenic Intergenic -12521 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 155.25-8 chr1 220745817 220746160 + 0.75 NA Intergenic L2c|LINE|L2 -2334 NM_001331042 54996 Hs.369042 NM_017898 ENSG00000117791 MARC2 MOSC2 mitochondrial amidoxime reducing component 2 protein-coding 342.75 chr1 86383914 86384601 + 0.75 NA intron (NM_001007022, intron 4 of 17) L1MB8|LINE|L1 11804 NM_001366784 57489 Hs.149360 NM_020729 ENSG00000122417 ODF2L - outer dense fiber of sperm tails 2 like protein-coding 219.75-6 chr1 218122792 218123145 + 0.75 NA Intergenic L1ME4b|LINE|L1 79463 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 213.25-4 chr1 211507516 211508067 + 0.75 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -14874 NM_001164688 343035 Hs.632495 NM_183059 ENSG00000198570 RD3 C1orf36|LCA12 retinal degeneration 3, GUCY2D regulator protein-coding 310-4 chr8 70240197 70241036 + 0.75 NA intron (NM_001321711, intron 2 of 21) Tigger17a|DNA|TcMar-Tigger 162774 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 188-24 chr16 84869021 84869299 + 0.75 NA intron (NM_031476, intron 8 of 14) L4_C_Mam|LINE|RTE-X 49175 NM_031476 83716 Hs.513779 NM_031476 ENSG00000103196 CRISPLD2 CRISP11|LCRISP2|LGL1 cysteine rich secretory protein LCCL domain containing 2 protein-coding 313.75-8 chr2 69257045 69257702 + 0.75 NA Intergenic L1MA3|LINE|L1 129854 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 219.25-23 chr2 122762369 122762853 + 0.75 NA Intergenic L1M3d|LINE|L1 310870 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 172-17 chr12 59453240 59453600 + 0.75 NA Intergenic Intergenic -142609 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 188.5-64 chr7 25990403 25990740 + 0.75 NA Intergenic Intergenic -40585 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 244-20 chr3 115428035 115428599 + 0.75 NA Intergenic Intergenic -195193 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 305-9 chr7 74380541 74381148 + 0.75 NA exon (NM_003388, exon 11 of 17) exon (NM_003388, exon 11 of 17) -73062 NM_001199207 9569 Hs.647056 NM_005685 ENSG00000006704 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 192.5-45 chr5 3257519 3257821 + 0.75 NA Intergenic MIR3|SINE|MIR 79835 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 203-3 chr10 24299737 24300066 + 0.75 NA intron (NM_019590, intron 2 of 20) intron (NM_019590, intron 2 of 20) 24216 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 290.5 chr1 49570739 49571286 + 0.75 NA intron (NR_136623, intron 2 of 12) L1PB4|LINE|L1 -98927 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 163.5-36 chr15 61522103 61522472 + 0.75 NA Intergenic Intergenic -207631 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 212.5-45 chr6 62165784 62166275 + 0.75 NA intron (NR_146874, intron 2 of 13) L1MB4|LINE|L1 120196 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 151-64 chr3 98737587 98737893 + 0.75 NA intron (NM_001323366, intron 1 of 11) L1PREC2|LINE|L1 4284 NM_001323365 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 236.5-28 chr5 164175633 164176228 + 0.75 NA Intergenic MER103C|DNA|hAT-Charlie 291472 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 179-20 chr18 57839979 57840288 + 0.75 NA Intergenic Intergenic -36818 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 174-7 chr1 219692089 219692337 + 0.75 NA Intergenic MIRb|SINE|MIR -79068 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 297.5-10 chr22 48405501 48406255 + 0.75 NA Intergenic Intergenic -83675 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 215.75-33 chr6 137971413 137971977 + 0.75 NA Intergenic LTR102_Mam|LTR|ERVL -25895 NR_149097 105378020 Hs.520420 NR_149097 ENSG00000226004 LINC02528 - long intergenic non-protein coding RNA 2528 ncRNA 204.75-16 chr14 63662525 63662959 + 0.75 NA Intergenic LTR32|LTR|ERVL -20871 NM_001258272 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 146-93 chr8 87698588 87699027 + 0.75 NA Intergenic Intergenic 175208 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 196-10 chr11 88467504 88468006 + 0.75 NA Intergenic L1MA4|LINE|L1 -36821 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 291.25-10 chr7 40299908 40300611 + 0.75 NA intron (NM_024728, intron 8 of 14) intron (NM_024728, intron 8 of 14) 165283 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 200-24 chr19 31189417 31189837 + 0.75 NA intron (NR_147209, intron 2 of 4) L1ME2z|LINE|L1 22117 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 149.75-72 chr5 34937806 34938236 + 0.75 NA intron (NM_194283, intron 5 of 12) AluSz|SINE|Alu 8428 NM_194283 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 166.5-68 chr5 116887085 116887418 + 0.75 NA Intergenic Intergenic -125042 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 254-6 chr2 158467829 158468591 + 0.75 NA intron (NM_001005476, intron 1 of 20) intron (NM_001005476, intron 1 of 20) 11258 NM_001005476 8502 Hs.407580 NM_003628 ENSG00000144283 PKP4 p0071 plakophilin 4 protein-coding 207.75-47 chr8 16523373 16523745 + 0.75 NA Intergenic Intergenic -330768 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 180.75-33 chr2 103698681 103699141 + 0.75 NA Intergenic L1PA10|LINE|L1 709421 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 229.75-36 chr8 81214419 81214936 + 0.75 NA Intergenic L1ME1|LINE|L1 -65859 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 168.5-85 chr5 113221983 113222240 + 0.75 NA intron (NM_001085377, intron 3 of 18) L1M4|LINE|L1 72827 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 147.5-27 chr14 52347139 52347466 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 32990 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 204.25-12 chr14 54593922 54594235 + 0.75 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 26466 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 264.25-2 chr11 42468999 42469700 + 0.75 NA Intergenic L2a|LINE|L2 -215659 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 154.75-92 chr7 55392995 55393394 + 0.75 NA intron (NM_018697, intron 2 of 8) intron (NM_018697, intron 2 of 8) 27746 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 166.75-91 chr8 68827039 68827387 + 0.75 NA Intergenic Intergenic 276977 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 220-10 chr2 100538897 100539327 + 0.75 NA Intergenic AluSx3|SINE|Alu -23881 NM_024065 79031 Hs.469459 NM_024065 ENSG00000115539 PDCL3 HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1 phosducin like 3 protein-coding 163.5-38 chr15 86107658 86108138 + 0.75 NA intron (NR_120368, intron 2 of 5) intron (NR_120368, intron 2 of 5) 8819 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 160.5-97 chr5 127065123 127065366 + 0.75 NA intron (NM_001164479, intron 2 of 4) intron (NM_001164479, intron 2 of 4) 8248 NM_001164478 401207 Hs.49573 NM_001164478 ENSG00000164241 C5orf63 YDR286C chromosome 5 open reading frame 63 protein-coding 236-18 chr2 42325996 42326360 + 0.75 NA exon (NM_019063, exon 21 of 23) exon (NM_019063, exon 21 of 23) 33860 NR_134948 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 276.25-9 chr4 84823873 84824336 + 0.75 NA intron (NM_014991, intron 10 of 67) L1ME1|LINE|L1 -141512 NR_152774 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 208-2 chr1 155587623 155587916 + 0.75 NA Intergenic Intergenic -22401 NM_001350773 55154 Hs.656547 NM_018116 ENSG00000125459 MSTO1 LST005|MMYAT|MST misato mitochondrial distribution and morphology regulator 1 protein-coding 341.25-3 chr10 94504597 94505072 + 0.75 NA intron (NM_015188, intron 6 of 12) intron (NM_015188, intron 6 of 12) -40933 NM_001289070 3070 Hs.463677 NM_018063 ENSG00000119969 HELLS ICF4|LSH|Nbla10143|PASG|SMARCA6 helicase, lymphoid specific protein-coding 178.75-15 chr13 27698296 27698790 + 0.75 NA Intergenic MSTB|LTR|ERVL-MaLR 76651 NM_152705 51082 Hs.507584 NM_015972 ENSG00000186184 POLR1D AC19|POLR1C|RPA16|RPA9|RPAC2|RPC16|RPO1-3|TCS2 RNA polymerase I and III subunit D protein-coding 200.75-10 chr11 73110974 73111538 + 0.75 NA intron (NM_014824, intron 2 of 19) L1MA3|LINE|L1 31062 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 152.75-12 chr1 196359907 196360227 + 0.75 NA intron (NR_146057, intron 13 of 26) intron (NR_146057, intron 13 of 26) 222414 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 276.5-16 chr8 113118786 113119475 + 0.75 NA intron (NM_001363185, intron 4 of 66) intron (NM_001363185, intron 4 of 66) 258022 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 149.75-51 chr21 41842266 41842528 + 0.75 NA intron (NM_001040424, intron 6 of 23) HAL1|LINE|L1 20905 NR_104260 63977 Hs.473893 NM_022115 ENSG00000141956 PRDM15 C21orf83|PFM15|ZNF298 PR/SET domain 15 protein-coding 250.5-26 chr7 113993730 113994141 + 0.75 NA Intergenic L1MA3|LINE|L1 -74926 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 216.25-28 chr8 79519800 79520351 + 0.75 NA Intergenic Intergenic -91042 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 179.25-55 chr4 178555877 178556267 + 0.75 NA Intergenic Intergenic -648136 NR_108093 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 207.5-43 chr8 91853438 91853801 + 0.75 NA Intergenic MER121|DNA|hAT? 164061 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 295-6 chr6 57127374 57128023 + 0.75 NA intron (NM_015555, intron 4 of 13) MIR|SINE|MIR 37510 NM_001257273 26036 Hs.485628 NM_015555 ENSG00000112200 ZNF451 COASTER|dJ417I1.1 zinc finger protein 451 protein-coding 149.75-38 chr2 116715782 116716017 + 0.75 NA Intergenic L1PB3|LINE|L1 -1098792 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 288.25 chr1 88007843 88008312 + 0.75 NA Intergenic Intergenic -636422 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 236.5-33 chr6 161927757 161928309 + 0.75 NA intron (NM_004562, intron 6 of 11) MLT1A0|LTR|ERVL-MaLR 457056 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 226.75-10 chr16 64544275 64544858 + 0.75 NA Intergenic Intergenic 577497 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 150-7 chr1 226108076 226108449 + 0.75 NA Intergenic AluJr|SINE|Alu 24687 NR_146920 105373113 Hs.149726 NR_146920 LINC01703 lncPARP1 long intergenic non-protein coding RNA 1703 ncRNA 212.75-8 chr15 58661708 58662289 + 0.75 NA intron (NM_001320570, intron 5 of 14) L1MA2|LINE|L1 31609 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 171.75-2 chr1 57888002 57888453 + 0.75 NA intron (NM_021080, intron 1 of 16) intron (NM_021080, intron 1 of 16) 27646 NR_104364 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 349-2 chr17 61514656 61515638 + 0.75 NA Intergenic AluSx|SINE|Alu 58659 NM_018488 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 192.25-44 chr4 32258705 32259057 + 0.75 NA Intergenic Intergenic -92157 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 190.75-16 chr11 90327649 90328084 + 0.75 NA intron (NR_104190, intron 1 of 6) AluJo|SINE|Alu 76634 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 263.75-11 chr2 157438950 157439409 + 0.75 NA intron (NM_004288, intron 1 of 7) intron (NM_004288, intron 1 of 7) 4910 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 201.25-46 chr7 86687338 86687636 + 0.75 NA intron (NM_001363522, intron 1 of 4) L1MEg|LINE|L1 43573 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 220-5 chr14 43131754 43132323 + 0.75 NA Intergenic Intergenic 1375245 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 276 chr1 102734114 102734723 + 0.75 NA Intergenic Intergenic 374078 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 162.25-100 chr8 110106924 110107288 + 0.75 NA Intergenic L1PA13|LINE|L1 -131335 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 235.5-11 chr15 59901104 59901532 + 0.75 NA Intergenic Intergenic -102993 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 302-4 chr22 38560711 38561331 + 0.75 NA intron (NM_001363017, intron 5 of 11) AluJb|SINE|Alu 7388 NM_001278208 11144 Hs.339396 NM_007068 ENSG00000100206 DMC1 DMC1H|LIM15|dJ199H16.1 DNA meiotic recombinase 1 protein-coding 213.75-15 chr21 30360167 30360663 + 0.75 NA Intergenic Intergenic -11809 NM_181624 337963 Hs.553688 NM_181624 ENSG00000186980 KRTAP23-1 KAP23.1 keratin associated protein 23-1 protein-coding 189.25-21 chr17 61909831 61910222 + 0.75 NA intron (NM_001351695, intron 7 of 24) L1MB4|LINE|L1 17956 NM_020748 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 221.5-28 chr2 132772135 132772611 + 0.75 NA intron (NM_207481, intron 14 of 17) MER3|DNA|hAT-Charlie -100847 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 268.5-13 chr2 68185966 68186583 + 0.75 NA intron (NM_000945, intron 5 of 5) intron (NM_000945, intron 5 of 5) 28386 NM_001329917 56902 Hs.262858 NM_020143 ENSG00000115946 PNO1 KHRBP1|RRP20 partner of NOB1 homolog protein-coding 199.5-55 chrX 66705129 66705556 + 0.75 NA Intergenic L1MA5|LINE|L1 -66044 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 257.5-23 chr8 124331362 124331956 + 0.75 NA intron (NM_194291, intron 1 of 6) intron (NM_194291, intron 1 of 6) 41040 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 203.5-17 chr14 46619802 46620265 + 0.75 NA Intergenic L1M2|LINE|L1 31748 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 295.75-2 chr13 85798790 85799224 + 0.75 NA 5' UTR (NM_032229, exon 1 of 2) 5' UTR (NM_032229, exon 1 of 2) 412 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 185.75-9 chr10 87726132 87726720 + 0.75 NA intron (NM_001015880, intron 8 of 12) AluSc|SINE|Alu 66548 NM_004670 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 182.75-53 chr5 24857174 24857618 + 0.75 NA Intergenic Intergenic -16813 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 151.25-61 chr3 118216696 118217112 + 0.75 NA Intergenic L1MA6|LINE|L1 -424864 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 167.75-33 chr15 58177733 58178073 + 0.75 NA intron (NM_001320635, intron 4 of 4) intron (NM_001320635, intron 4 of 4) 39522 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 213.25-22 chr2 148146397 148146802 + 0.75 NA intron (NM_018328, intron 2 of 14) L1M4|LINE|L1 -124995 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 259.75-16 chr6 52249780 52250236 + 0.75 NA Intergenic AluJb|SINE|Alu -5508 NM_052872 112744 Hs.272295 NM_052872 ENSG00000112116 IL17F CANDF6|IL-17F|ML-1|ML1 interleukin 17F protein-coding 203.25-8 chr13 48644760 48645060 + 0.75 NA Intergenic Intergenic -9019 NM_001308476 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 275.5-10 chr2 53135231 53135803 + 0.75 NA Intergenic MLT1F2|LTR|ERVL-MaLR -432902 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 232-4 chr1 114285995 114286386 + 0.75 NA Intergenic Intergenic -132321 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 167-40 chr2 59325350 59325753 + 0.75 NA Intergenic L1ME4b|LINE|L1 107843 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 145.75-96 chr5 104354656 104355078 + 0.75 NA Intergenic Intergenic -744607 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 277.75-18 chr8 83966866 83967588 + 0.75 NA Intergenic Intergenic -215560 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 153.75-25 chr17 61966037 61966437 + 0.75 NA intron (NM_005121, intron 19 of 29) MER58A|DNA|hAT-Charlie -38255 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 240-6 chr12 41816495 41817029 + 0.75 NA Intergenic MER6A|DNA|TcMar-Tigger 52573 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 189.75-69 chr6 149089857 149090316 + 0.75 NA Intergenic Intergenic -57425 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 195.75-9 chr10 67255824 67256289 + 0.75 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) 147354 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 227.5-27 chr7 13555119 13555464 + 0.75 NA Intergenic Intergenic 431223 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 226.75-28 chr9 32071061 32071761 + 0.75 NA Intergenic LTR33|LTR|ERVL -313192 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 230.75-14 chr15 91624794 91625232 + 0.75 NA Intergenic MER5B|DNA|hAT-Charlie 161674 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 249.5-12 chr2 96846829 96847531 + 0.75 NA TTS (NM_016466) TTS (NM_016466) -3159 NM_144994 200539 Hs.643430 NM_144994 ENSG00000163126 ANKRD23 DARP|MARP3 ankyrin repeat domain 23 protein-coding 297-7 chr3 145351976 145352497 + 0.75 NA Intergenic Intergenic 716949 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 217.25-2 chr1 106694073 106694428 + 0.75 NA Intergenic L2c|LINE|L2 -123989 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 176.5-28 chr16 74086968 74087237 + 0.75 NA Intergenic L1MA8|LINE|L1 128419 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 161.75-56 chr4 39085841 39086303 + 0.75 NA intron (NM_199039, intron 3 of 9) intron (NM_199039, intron 3 of 9) 23840 NM_199039 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 265-9 chr3 106308637 106309448 + 0.75 NA Intergenic Intergenic -439641 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 200.5-3 chr10 32866718 32867248 + 0.75 NA intron (NM_001321115, intron 42 of 43) L1MC4|LINE|L1 34489 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 436.5 chr12 24303059 24304000 + 0.75 NA intron (NM_152989, intron 3 of 17) intron (NM_152989, intron 3 of 17) 80258 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 154.5-12 chr1 238221539 238221777 + 0.75 NA Intergenic AluSx1|SINE|Alu 264359 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 186.5-65 chr6 162751829 162752368 + 0.75 NA intron (NM_001080379, intron 1 of 4) intron (NM_001080379, intron 1 of 4) 24128 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 297 chr2 25414220 25414854 + 0.75 NA 3' UTR (NM_001351389, exon 16 of 16) 3' UTR (NM_001351389, exon 16 of 16) -71947 NM_175629 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 277.25-2 chr16 82447996 82448535 + 0.75 NA Intergenic MER90a|LTR|ERV1 -178704 NM_001220489 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 233.75-28 chr5 125906375 125906970 + 0.75 NA Intergenic Intergenic -272905 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 196-43 chr6 84123956 84124383 + 0.75 NA TTS (NM_014895) TTS (NM_014895) 90050 NM_001346544 112609 Hs.370055 NM_138409 ENSG00000135324 MRAP2 C6orf117|bA51G5.2 melanocortin 2 receptor accessory protein 2 protein-coding 214.75-15 chr11 11943720 11944228 + 0.75 NA intron (NM_001282659, intron 20 of 27) MIRc|SINE|MIR 64665 NM_001018057 27122 Hs.292156 NM_013253 ENSG00000050165 DKK3 REIC|RIG dickkopf WNT signaling pathway inhibitor 3 protein-coding 196.25-9 chr12 64790904 64791461 + 0.75 NA intron (NM_001330188, intron 3 of 13) L1MB7|LINE|L1 10427 NM_001330188 23329 Hs.192492 NM_015279 ENSG00000111490 TBC1D30 - TBC1 domain family member 30 protein-coding 181.25 chr1 50223335 50223684 + 0.75 NA Intergenic L2a|LINE|L2 113676 NM_001324215 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 314.25-2 chr2 182788951 182789580 + 0.75 NA non-coding (NR_073365, exon 24 of 24) non-coding (NR_073365, exon 24 of 24) 73008 NM_018981 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 268.75-10 chr4 166369435 166369983 + 0.75 NA Intergenic L1M1|LINE|L1 496472 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 270.75-7 chr11 102117288 102117953 + 0.75 NA intron (NM_001130145, intron 2 of 8) intron (NM_001130145, intron 2 of 8) 5172 NM_001195045 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 211.75-49 chr9 119598075 119598587 + 0.75 NA Intergenic AluSx1|SINE|Alu -228896 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 206.25-7 chr10 67716226 67716672 + 0.75 NA Intergenic L1PA7|LINE|L1 -20254 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 152.5-48 chr2 22679312 22679591 + 0.75 NA Intergenic L1M5|LINE|L1 142972 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 156.5-37 chr14 78981768 78982149 + 0.75 NA intron (NR_073547, intron 13 of 20) intron (NR_073547, intron 13 of 20) -218024 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 346-4 chr8 74863542 74864113 + 0.75 NA Intergenic Intergenic 39293 NM_001324403 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 175.5-86 chr7 26280385 26280762 + 0.75 NA Intergenic L1ME3G|LINE|L1 -11305 NM_001362754 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 195.25-24 chr2 22439423 22439745 + 0.75 NA Intergenic L1MA7|LINE|L1 -96895 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 202-49 chr7 91866221 91866588 + 0.75 NA Intergenic Intergenic 14298 NM_001301134 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 203.25-45 chr8 118063426 118063826 + 0.75 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 48193 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 213-25 chr4 167137140 167137761 + 0.75 NA intron (NM_001204352, intron 2 of 11) intron (NM_001204352, intron 2 of 11) 96976 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 185.5-48 chr3 126434070 126434397 + 0.75 NA exon (NM_182628, exon 15 of 17) exon (NM_182628, exon 15 of 17) 39324 NM_182628 348807 Hs.591305 NM_182628 ENSG00000163885 CFAP100 CCDC37|MIA1 cilia and flagella associated protein 100 protein-coding 177.5 chr1 12567228 12567669 + 0.75 NA TTS (NM_004753) TTS (NM_004753) 11575 NR_106788 102466722 NR_106788 ENSG00000276830 MIR6730 hsa-mir-6730 microRNA 6730 ncRNA 180.25-48 chr3 144133277 144133553 + 0.75 NA Intergenic Intergenic 160334 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 183.75-52 chr2 237095406 237095807 + 0.75 NA intron (NM_198189, intron 6 of 8) intron (NM_198189, intron 6 of 8) 9717 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 206.75-56 chr8 114502867 114503248 + 0.75 NA Intergenic Intergenic -1066118 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 162.75-29 chr15 96056138 96056418 + 0.75 NA Intergenic Intergenic 71563 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 155-7 chr1 182463656 182463952 + 0.75 NA intron (NM_001137669, intron 4 of 21) L1PA4|LINE|L1 13658 NM_001137669 353299 Hs.121200 NM_032267 ENSG00000121446 RGSL1 RGSL|RGSL2 regulator of G protein signaling like 1 protein-coding 288.75 chr1 14422401 14422995 + 0.75 NA Intergenic Intergenic -2725 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 236.75-20 chr4 30572431 30573032 + 0.75 NA Intergenic MER89|LTR|ERV1 -147638 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 274.5-7 chr14 63605995 63606653 + 0.75 NA intron (NM_080666, intron 2 of 2) Tigger3b|DNA|TcMar-Tigger 35547 NM_001008726 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 253.5-12 chr2 50302798 50303260 + 0.75 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 44725 NM_001330097 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 229.25-2 chr1 117528800 117529411 + 0.75 NA TTS (NM_006699) TTS (NM_006699) 76665 NR_121626 100996263 Hs.202533 NR_121626 ENSG00000236866 LOC100996263 - uncharacterized LOC100996263 ncRNA 274.25-4 chr2 104294014 104294426 + 0.75 NA Intergenic L1MEf|LINE|L1 114112 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 175.5-47 chr2 119672793 119673160 + 0.75 NA Intergenic L2a|LINE|L2 -6191 NM_001105198 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 156.5-65 chr3 25481310 25481717 + 0.75 NA intron (NR_110892, intron 2 of 6) intron (NR_110892, intron 2 of 6) 23203 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 189-16 chr12 68295482 68295867 + 0.75 NA intron (NM_001368282, intron 13 of 13) intron (NM_001368282, intron 13 of 13) 36688 NM_001368282 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 189-17 chr12 87066042 87066537 + 0.75 NA Intergenic Intergenic -227289 NM_001351285 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 264.5-25 chr8 124055901 124056423 + 0.75 NA intron (NM_001039112, intron 22 of 40) MLT1D|LTR|ERVL-MaLR -15380 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 172.25-61 chr6 36319118 36319523 + 0.75 NA intron (NM_001010903, intron 11 of 11) intron (NM_001010903, intron 11 of 11) 17568 NM_001010903 389384 Hs.162104 NM_001010903 ENSG00000189325 BNIP5 C6orf222 BCL2 interacting protein 5 protein-coding 161.75-90 chr8 114859536 114859881 + 0.75 NA Intergenic Intergenic 808305 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 268.5-26 chr8 141484908 141485539 + 0.75 NA intron (NR_102364, intron 6 of 26) L1ME2|LINE|L1 22006 NR_160399 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 228-2 chr1 230714019 230714415 + 0.75 NA promoter-TSS (NM_000029) promoter-TSS (NM_000029) -95 NM_000029 183 Hs.19383 NM_000029 ENSG00000135744 AGT ANHU|SERPINA8|hFLT1 angiotensinogen protein-coding 198-33 chr5 100590865 100591369 + 0.75 NA Intergenic L4_A_Mam|LINE|RTE-X 55743 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 202.75-35 chr5 30858389 30858860 + 0.75 NA Intergenic L2c|LINE|L2 -335062 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 184.75-28 chr14 59541752 59542128 + 0.75 NA intron (NM_001164399, intron 10 of 19) intron (NM_001164399, intron 10 of 19) 34872 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 281-12 chr8 33026162 33026572 + 0.75 NA Intergenic L1PB2|LINE|L1 304532 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 149-27 chr15 79305346 79305764 + 0.75 NA Intergenic L1MEg|LINE|L1 -5507 NM_001363735 23423 Hs.71608 NM_007364 ENSG00000166557 TMED3 C15orf22|P24B|p24g4|p24gamma4|p26 transmembrane p24 trafficking protein 3 protein-coding 181.5-46 chr22 27622868 27623122 + 0.75 NA Intergenic Intergenic 178761 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 257.75-14 chr20 13368357 13368828 + 0.75 NA Intergenic LTR16C|LTR|ERVL -128905 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 180-61 chr7 13547118 13547496 + 0.75 NA Intergenic L1MA3|LINE|L1 439207 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 186.75-5 chr1 217356142 217356625 + 0.75 NA Intergenic Intergenic -218681 NM_001243510 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 241-29 chr8 99132060 99132528 + 0.75 NA intron (NM_017890, intron 8 of 61) Tigger1|DNA|TcMar-Tigger 119028 NM_015243 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 152.5-114 chr9 104581698 104582093 + 0.75 NA Intergenic Intergenic 12727 NM_001004483 138802 Hs.553599 NM_001004483 ENSG00000186943 OR13C8 OR37H|OR9-10 olfactory receptor family 13 subfamily C member 8 protein-coding 304-2 chr2 10980368 10980901 + 0.75 NA Intergenic Intergenic 68700 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 252.75-6 chr12 41029408 41030037 + 0.75 NA intron (NM_001843, intron 23 of 23) intron (NM_001843, intron 23 of 23) 121365 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 161.75-73 chr5 19938930 19939280 + 0.75 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) 49095 NM_001349560 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 152.25-41 chr2 35191581 35191925 + 0.75 NA Intergenic L2a|LINE|L2 -279652 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 240.25-29 chr8 87442065 87442743 + 0.75 NA Intergenic L1MA4|LINE|L1 431611 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 194.5-31 chr19 28445812 28446176 + 0.75 NA intron (NR_110759, intron 7 of 9) MER51-int|LTR|ERV1 -160694 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 200-10 chr11 15447791 15448111 + 0.75 NA Intergenic Intergenic -195934 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 301.75 chr11 38033788 38034650 + 0.75 NA Intergenic AluSx|SINE|Alu 95618 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 189.25-59 chr9 91947015 91947526 + 0.75 NA intron (NM_001318204, intron 1 of 7) intron (NM_001318204, intron 1 of 7) 2958 NM_001318204 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 180.75-63 chr7 91810835 91811199 + 0.75 NA Intergenic Intergenic 69685 NM_001301134 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 250.75-9 chr14 74383277 74383863 + 0.75 NA Intergenic L1ME2z|LINE|L1 35099 NM_018228 55237 Hs.578167 NM_018228 ENSG00000133980 VRTN C14orf115|vertnin vertebrae development associated protein-coding 177.25-40 chr2 174029069 174029435 + 0.75 NA Intergenic Tigger8|DNA|TcMar-Tigger 3972 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 170.25-17 chr14 53836162 53836546 + 0.75 NA Intergenic MER39|LTR|ERV1 112130 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 145.75-132 chr9 87694481 87694854 + 0.75 NA intron (NM_004938, intron 21 of 25) L1MA4A|LINE|L1 -31452 NM_001257973 1514 Hs.731507 NM_001912 ENSG00000135047 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 189.25-31 chr20 24072603 24072950 + 0.75 NA Intergenic Intergenic -83997 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 163.5-32 chr14 69398307 69398649 + 0.75 NA promoter-TSS (NM_001252148) promoter-TSS (NM_001252148) 94 NM_001252151 55334 Hs.432690 NM_018375 ENSG00000029364 SLC39A9 ZIP-9|ZIP9 solute carrier family 39 member 9 protein-coding 177-41 chr3 87461021 87461283 + 0.75 NA Intergenic L1MA3|LINE|L1 -184568 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 148.5-58 chr22 27390106 27390371 + 0.75 NA Intergenic Intergenic 79587 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 186.75-60 chr3 189927793 189928165 + 0.75 NA Intergenic MER5B|DNA|hAT-Charlie 98057 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 190-2 chr1 73553589 73554070 + 0.75 NA Intergenic L1MD2|LINE|L1 -120850 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 199.5-25 chr2 51813332 51813701 + 0.75 NA intron (NR_135237, intron 6 of 10) L2|LINE|L2 -557132 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 191.25-2 chr1 36844123 36844589 + 0.75 NA intron (NM_000831, intron 9 of 15) intron (NM_000831, intron 9 of 15) 190159 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 154.75-87 chr5 125546480 125546818 + 0.75 NA intron (NR_109887, intron 3 of 3) L1MDa|LINE|L1 53388 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 155-58 chr3 88678394 88678797 + 0.75 NA Intergenic Intergenic 340139 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 184-16 chr14 87514382 87514775 + 0.75 NA Intergenic Intergenic 140716 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 267.75-3 chr11 44026356 44026871 + 0.75 NA Intergenic L1MB7|LINE|L1 -21368 NM_001363113 390110 Hs.558851 NM_001031854 ENSG00000205126 ACCSL - 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like protein-coding 172.75-73 chr9 24677828 24678277 + 0.75 NA Intergenic Intergenic -132155 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 214-8 chr11 111552031 111552434 + 0.75 NA intron (NM_178834, intron 3 of 6) L2a|LINE|L2 11724 NM_001258391 143903 Hs.503831 NM_178834 ENSG00000204381 LAYN - layilin protein-coding 203.25-19 chr18 29208857 29209325 + 0.75 NA Intergenic LTR49-int|LTR|ERV1 -1031961 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 163-91 chrX 57288617 57288902 + 0.75 NA intron (NR_148564, intron 1 of 11) MIR|SINE|MIR 1905 NR_148564 158584 Hs.496205 NM_174912 ENSG00000165591 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 225.25-24 chr3 36863652 36864043 + 0.75 NA intron (NM_001329998, intron 10 of 23) intron (NM_001329998, intron 10 of 23) -41347 NR_147141 105377031 Hs.333862 NR_147141 ENSG00000279727 LINC02033 - long intergenic non-protein coding RNA 2033 ncRNA 155-57 chr3 78243844 78244105 + 0.75 NA Intergenic Intergenic -195011 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 180.25-45 chr3 111080809 111081067 + 0.75 NA intron (NM_001243288, intron 1 of 8) intron (NM_001243288, intron 1 of 8) 9122 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 155.5-39 chr17 81309475 81309729 + 0.75 NA promoter-TSS (NR_038080) promoter-TSS (NR_038080) -354 NR_038080 284185 Hs.631762 NM_178519 LINC00482 C17orf55 long intergenic non-protein coding RNA 482 ncRNA 297.25-11 chr8 119151195 119151793 + 0.75 NA Intergenic L2|LINE|L2 -56869 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 367.5-3 chr2 134486547 134487421 + 0.75 NA intron (NM_030923, intron 5 of 7) L1ME3G|LINE|L1 232016 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 163.5-39 chr16 13133582 13133826 + 0.75 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 232106 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 219.25-44 chr7 36808623 36809208 + 0.75 NA Intergenic Intergenic -84366 NM_001177506 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 275.5-8 chr14 81731669 81732357 + 0.75 NA Intergenic L2c|LINE|L2 11125 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 172-35 chr2 34328984 34329375 + 0.75 NA Intergenic L2a|LINE|L2 261953 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 277.25-4 chr19 28805396 28806046 + 0.75 NA Intergenic L1P4|LINE|L1 -78027 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 266.25-18 chr6 139387159 139387591 + 0.75 NA Intergenic AluSx1|SINE|Alu -12727 NM_006079 10370 Hs.82071 NM_006079 ENSG00000164442 CITED2 ASD8|MRG-1|MRG1|P35SRJ|VSD2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 protein-coding 286.75-6 chr3 68526098 68526568 + 0.75 NA intron (NM_001252216, intron 3 of 4) intron (NM_001252216, intron 3 of 4) 25696 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 169.5-60 chr3 111801864 111802145 + 0.75 NA intron (NM_001185106, intron 4 of 4) L1MB7|LINE|L1 -57176 NM_145753 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 260.25-29 chr9 4434586 4435187 + 0.75 NA Intergenic Intergenic -55582 NM_004170 6505 Hs.444915 NM_004170 ENSG00000106688 SLC1A1 DCBXA|EAAC1|EAAT3|SCZD18 solute carrier family 1 member 1 protein-coding 242.5-37 chr6 53620044 53620535 + 0.75 NA Intergenic MIR|SINE|MIR -8091 NR_125841 101927171 Hs.334005 NR_125841 ENSG00000235899 LINC01564 TCONS_00011314|XLOC_005327 long intergenic non-protein coding RNA 1564 ncRNA 203.25-5 chr10 44918410 44918766 + 0.75 NA intron (NM_001345926, intron 1 of 3) L1M4|LINE|L1 7251 NM_001123376 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 159.75-88 chr6 125178824 125179235 + 0.75 NA intron (NM_001292026, intron 1 of 4) intron (NM_001292026, intron 1 of 4) 18788 NR_149043 100126584 Hs.640031 NR_149043 LOC100126584 - uncharacterized LOC100126584 ncRNA 158.5-36 chr18 6876040 6876358 + 0.75 NA exon (NM_001366231, exon 10 of 17) exon (NM_001366231, exon 10 of 17) 41714 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 196.25-34 chr2 138372816 138373151 + 0.75 NA Intergenic Intergenic -128787 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 166-68 chr7 38016004 38016313 + 0.75 NA Intergenic L1MC3|LINE|L1 94839 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 149.25-84 chr5 42871057 42871389 + 0.75 NA Intergenic L1PB1|LINE|L1 -59147 NM_001085486 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 152.75-94 chr7 113797504 113797808 + 0.75 NA Intergenic Intergenic 121353 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 162.75-40 chr2 123002533 123002913 + 0.75 NA Intergenic Intergenic 70758 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 160.75-106 chr8 137966723 137967177 + 0.75 NA intron (NR_161374, intron 2 of 7) MLT1E2|LTR|ERVL-MaLR 116595 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 192.75-30 chr2 148778036 148778380 + 0.75 NA intron (NM_015630, intron 10 of 13) intron (NM_015630, intron 10 of 13) -97019 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 161.75-37 chr20 42791193 42791669 + 0.75 NA exon (NM_007050, exon 3 of 31) exon (NM_007050, exon 3 of 31) 105948 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 177.5-20 chr14 68975424 68975815 + 0.75 NA intron (NM_001102, intron 1 of 20) intron (NM_001102, intron 1 of 20) 3683 NM_001130005 87 Hs.235750 NM_001102 ENSG00000072110 ACTN1 BDPLT15 actinin alpha 1 protein-coding 169.75-58 chr5 30241991 30242387 + 0.75 NA Intergenic Intergenic 361629 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 162.25-72 chr5 86591066 86591329 + 0.75 NA Intergenic Intergenic -26744 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 247.5-18 chr17 77087795 77088148 + 0.75 NA promoter-TSS (NR_027058) promoter-TSS (NR_027058) -672 NR_027058 654434 Hs.720923 NR_027058 ENSG00000234912 SNHG20 C17orf86|LINC00338|NCRNA00338|SCARNA16HG small nucleolar RNA host gene 20 ncRNA 189.25-7 chr10 39419399 39419814 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 723010 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 232.25-27 chr3 186944774 186945254 + 0.75 NA intron (NM_173216, intron 1 of 7) intron (NM_173216, intron 1 of 7) 14488 NM_173217 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 162.5-50 chr21 15492964 15493333 + 0.75 NA Intergenic Intergenic -236786 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 201.25-21 chr2 31702276 31702603 + 0.75 NA Intergenic L1M3b|LINE|L1 101541 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 219.25-22 chr2 106681179 106681723 + 0.75 NA Intergenic L1MD2|LINE|L1 194087 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 178.5-62 chr8 59467955 59468231 + 0.75 NA Intergenic L1MEc|LINE|L1 348883 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 182-55 chr7 84512511 84512870 + 0.75 NA Intergenic Intergenic -19786 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 203-22 chr2 49367291 49367644 + 0.75 NA Intergenic Intergenic -212940 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 167.75-12 chr10 123135346 123135676 + 0.75 NA promoter-TSS (NM_001105574) promoter-TSS (NM_001105574) -459 NM_001105574 340784 Hs.531194 NM_001105574 ENSG00000188620 HMX3 NKX-5.1|NKX5.1|Nkx5-1 H6 family homeobox 3 protein-coding 167-90 chr8 122922499 122922781 + 0.75 NA intron (NM_001362797, intron 3 of 4) intron (NM_001362797, intron 3 of 4) 103132 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 200.5-24 chr17 71918057 71918367 + 0.75 NA Intergenic Intergenic 107767 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 184.25-5 chr1 183858426 183858856 + 0.75 NA intron (NM_001297669, intron 4 of 18) intron (NM_001297669, intron 4 of 18) 53521 NM_001297671 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 164.5-89 chr7 144494471 144494908 + 0.75 NA intron (NM_001042482, intron 7 of 7) L1M3|LINE|L1 -84462 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 265.5-11 chr2 78786251 78786770 + 0.75 NA Intergenic L1ME4a|LINE|L1 -239192 NM_001008387 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 311.5 chr1 94639202 94639951 + 0.75 NA intron (NR_160780, intron 3 of 5) L1MB7|LINE|L1 95874 NR_162147 113219466 NR_162147 MIR12133 - microRNA 12133 ncRNA 347.25-6 chr4 109204030 109204932 + 0.75 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 98177 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 189.75-74 chr8 16043867 16044447 + 0.75 NA Intergenic Intergenic 142115 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 168-12 chr10 55860336 55860580 + 0.75 NA Intergenic L1M5|LINE|L1 -232516 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 158-97 chrX 94153419 94153798 + 0.75 NA Intergenic Intergenic 479402 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 365-3 chr6 9222299 9223064 + 0.75 NA Intergenic L2b|LINE|L2 570472 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 153-50 chr20 54613674 54614033 + 0.75 NA intron (NM_018431, intron 6 of 7) AluJr|SINE|Alu 138260 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 201.75-21 chr2 104577964 104578310 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR -67628 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 192.75-41 chr3 189729288 189729771 + 0.75 NA intron (NM_003722, intron 1 of 13) intron (NM_003722, intron 1 of 13) -60130 NM_001329150 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 148.5-81 chr5 102239599 102239878 + 0.75 NA intron (NM_180991, intron 11 of 12) intron (NM_180991, intron 11 of 12) 56546 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 226.5-8 chr14 59027661 59028039 + 0.75 NA Intergenic AluSx1|SINE|Alu -160817 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 171.25-60 chr8 105984863 105985290 + 0.75 NA intron (NR_125797, intron 1 of 4) L1MA8|LINE|L1 75427 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 218-28 chr8 81848216 81848684 + 0.75 NA Intergenic HERV4_I-int|LTR|ERV1 -6164 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 200.75-43 chr5 79351107 79351539 + 0.75 NA Intergenic MER65-int|LTR|ERV1 115192 NM_152405 133746 Hs.482605 NM_152405 ENSG00000152409 JMY WHAMM2|WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 158.5-7 chr10 53780362 53780784 + 0.75 NA Intergenic Intergenic -705657 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 227.25-12 chr14 42435955 42436345 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL 829294 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 231-19 chr5 28680199 28680618 + 0.75 NA Intergenic Intergenic -246462 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 206-32 chr6 142741557 142742039 + 0.75 NA Intergenic Intergenic -103909 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 190.25-22 chr20 1236431 1236910 + 0.75 NA intron (NM_001136566, intron 5 of 13) MIRb|SINE|MIR 10550 NM_001136566 642636 Hs.713451 NM_001136566 ENSG00000244588 RAD21L1 RAD21L|dJ545L17.2 RAD21 cohesin complex component like 1 protein-coding 166.25-26 chr15 78918548 78918878 + 0.75 NA Intergenic Intergenic 26385 NM_004390 1512 Hs.148641 NM_004390 ENSG00000103811 CTSH ACC-4|ACC-5|ACC4|ACC5|CPSB cathepsin H protein-coding 172.75-37 chr2 180518074 180518350 + 0.75 NA Intergenic Intergenic -173892 NR_104324 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 185.75-16 chr13 52353080 52353500 + 0.75 NA Intergenic Intergenic 18995 NR_120400 103191607 NR_120400 ENSG00000271564 LINC02333 - long intergenic non-protein coding RNA 2333 ncRNA 215.75-26 chr5 26924509 26924912 + 0.75 NA intron (NM_016279, intron 2 of 11) L1PA6|LINE|L1 113876 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 193.75-20 chr12 126646736 126647020 + 0.75 NA Intergenic Intergenic 43440 NR_110036 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 308.5-2 chr2 46032980 46033660 + 0.75 NA intron (NM_005400, intron 10 of 14) intron (NM_005400, intron 10 of 14) -264087 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 183.75-4 chr1 70672676 70673079 + 0.75 NA Intergenic Intergenic -33576 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 195.5-63 chr6 141213539 141214001 + 0.75 NA Intergenic Intergenic 529956 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 231.25-34 chr6 155284511 155285129 + 0.75 NA intron (NM_016020, intron 5 of 6) intron (NM_016020, intron 5 of 6) 20807 NM_001001346 49861 Hs.567491 NM_001001346 ENSG00000171217 CLDN20 - claudin 20 protein-coding 155-89 chr6 115721098 115721360 + 0.75 NA Intergenic Intergenic -77394 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 180.25-21 chr14 82845951 82846365 + 0.75 NA Intergenic Intergenic 203526 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 267.5-28 chrX 78740278 78740977 + 0.75 NA Intergenic MSTA-int|LTR|ERVL-MaLR -7082 NM_001278000 2846 Hs.522701 NM_005296 ENSG00000147145 LPAR4 GPR23|LPA4|P2RY9|P2Y5-LIKE|P2Y9 lysophosphatidic acid receptor 4 protein-coding 175.25-18 chr12 119022122 119022521 + 0.75 NA intron (NM_194286, intron 1 of 12) L2b|LINE|L2 40780 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 237-17 chr7 54905222 54905682 + 0.75 NA Intergenic MER41D|LTR|ERV1 -113565 NM_005228 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 261-3 chr1 102773933 102774558 + 0.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 334251 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 235.5-10 chr13 57943054 57943460 + 0.75 NA Intergenic Tigger2a|DNA|TcMar-Tigger -222570 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 147-36 chr18 40032948 40033177 + 0.75 NA Intergenic Intergenic -33224 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 232.5-48 chr7 46490097 46490484 + 0.75 NA Intergenic Intergenic 206832 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 214-35 chr8 134473395 134473772 + 0.75 NA Intergenic Alu|SINE|Alu -124488 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 182.25-50 chr6 148021081 148021462 + 0.75 NA Intergenic MLT1G1|LTR|ERVL-MaLR -251057 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 180-43 chr3 53877376 53877824 + 0.75 NA intron (NM_022899, intron 4 of 12) intron (NM_022899, intron 4 of 12) 4552 NM_022899 93973 Hs.412186 NM_022899 ENSG00000113812 ACTR8 ARP8|INO80N|hArp8 actin related protein 8 protein-coding 213.75-16 chr22 24212891 24213268 + 0.75 NA Intergenic L1M5|LINE|L1 31592 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2|W5C5 sushi domain containing 2 protein-coding 200.5-31 chr2 17442020 17442509 + 0.75 NA Intergenic L1M5|LINE|L1 76176 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 177.75-59 chr5 21039575 21039933 + 0.75 NA Intergenic L1MB4|LINE|L1 -419726 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 284.5-12 chr6 65358874 65359587 + 0.75 NA intron (NM_198283, intron 7 of 9) intron (NM_198283, intron 7 of 9) 57812 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 168-74 chrX 115305702 115306043 + 0.75 NA intron (NM_016383, intron 3 of 3) intron (NM_016383, intron 3 of 3) 16157 NM_001318840 51213 Hs.242183 NM_016383 ENSG00000102021 LUZP4 CT-28|CT-8|CT28|HOM-TES-85 leucine zipper protein 4 protein-coding 158.5-100 chr8 119516954 119517312 + 0.75 NA Intergenic Intergenic 75875 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 145.75-125 chr8 83871544 83871771 + 0.75 NA Intergenic MLT1J2|LTR|ERVL-MaLR -311130 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 186.25-64 chr9 9678319 9678721 + 0.75 NA intron (NM_002839, intron 7 of 45) intron (NM_002839, intron 7 of 45) -120872 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 214.5-42 chr6 68512641 68512959 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR 121524 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 146.25-96 chr8 77409685 77410153 + 0.75 NA Intergenic Intergenic -40778 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 191.5-45 chr5 44028371 44028816 + 0.75 NA Intergenic Intergenic -360139 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 148-11 chr1 185046955 185047385 + 0.75 NA intron (NM_007212, intron 1 of 6) intron (NM_007212, intron 1 of 6) 1612 NM_007212 6045 Hs.591490 NM_007212 ENSG00000121481 RNF2 BAP-1|BAP1|DING|HIPI3|RING1B|RING2 ring finger protein 2 protein-coding 177.25-41 chr2 188479151 188479477 + 0.75 NA intron (NM_016315, intron 3 of 11) intron (NM_016315, intron 3 of 11) 181822 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 311-5 chr4 171844556 171845149 + 0.75 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -31245 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 347.75-3 chr12 41532519 41533276 + 0.75 NA intron (NM_001164595, intron 5 of 9) intron (NM_001164595, intron 5 of 9) 95158 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 247-10 chr14 61335900 61336319 + 0.75 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 14666 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 182.5-9 chr11 80804701 80805278 + 0.75 NA Intergenic Intergenic -42186 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 414.5-2 chr4 49108227 49109154 + 0.75 NA Intergenic (CATTC)n|Satellite|Satellite 122048 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 177-52 chr5 60967225 60967480 + 0.75 NA intron (NM_174889, intron 1 of 3) L1MA9|LINE|L1 22147 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 177-15 chr12 129654772 129655119 + 0.75 NA intron (NM_133448, intron 2 of 8) AluSc8|SINE|Alu 249080 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 256-5 chr16 63955596 63956178 + 0.75 NA Intergenic Intergenic 1166176 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 324.5-3 chr13 25270536 25271347 + 0.75 NA intron (NM_004685, intron 2 of 13) MIRb|SINE|MIR 16547 NM_004685 9107 Hs.643702 NM_004685 ENSG00000139505 MTMR6 - myotubularin related protein 6 protein-coding 176.5-21 chr15 69404771 69405188 + 0.75 NA 3' UTR (NM_017705, exon 9 of 9) 3' UTR (NM_017705, exon 9 of 9) -9370 NM_004856 9493 Hs.270845 NM_004856 ENSG00000137807 KIF23 CHO1|KNSL5|MKLP-1|MKLP1 kinesin family member 23 protein-coding 172.5-73 chr7 17299661 17300028 + 0.75 NA intron (NM_001621, intron 1 of 10) intron (NM_001621, intron 1 of 10) 1192 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 165.25-48 chr4 181739208 181739516 + 0.75 NA Intergenic Intergenic 90611 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 281.5-10 chr14 46147073 46147599 + 0.75 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 83177 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 230.5-5 chr10 33687645 33688236 + 0.75 NA Intergenic LOR1a|LTR|ERV1 84740 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 202.5-41 chr3 70633951 70634467 + 0.75 NA Intergenic L1MA8|LINE|L1 -321571 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 184.75-2 chr1 38936164 38936433 + 0.75 NA intron (NM_017821, intron 1 of 7) AluSz|SINE|Alu 5532 NM_017821 54933 Hs.524626 NM_017821 ENSG00000158315 RHBDL2 RRP2 rhomboid like 2 protein-coding 247.25-27 chr9 101552675 101553297 + 0.75 NA intron (NM_019592, intron 13 of 19) intron (NM_019592, intron 13 of 19) 19133 NM_019592 56254 Hs.729085 NM_019592 ENSG00000155827 RNF20 BRE1|BRE1A|hBRE1 ring finger protein 20 protein-coding 158.5-70 chr3 193138572 193138935 + 0.75 NA Intergenic Intergenic -102469 NM_001366112 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 300.25-14 chr8 83769472 83770133 + 0.75 NA Intergenic L1PA14|LINE|L1 366044 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 161.75-31 chr2 49575321 49575596 + 0.75 NA Intergenic Intergenic 398745 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 157.5-45 chr2 19109068 19109430 + 0.75 NA Intergenic MIRc|SINE|MIR -82278 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 194-42 chr5 87897238 87897763 + 0.75 NA Intergenic Intergenic 235458 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 162.75-4 chr1 173202296 173202579 + 0.75 NA intron (NM_003326, intron 1 of 2) intron (NM_003326, intron 1 of 2) 3095 NM_001297562 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 228-22 chr5 95576911 95577500 + 0.75 NA intron (NM_198150, intron 3 of 7) intron (NM_198150, intron 3 of 7) 22104 NM_198150 153642 Hs.585051 NM_198150 ENSG00000164291 ARSK TSULF arylsulfatase family member K protein-coding 202.75-3 chr1 73041907 73042503 + 0.75 NA Intergenic Intergenic -263965 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 167.75-57 chr3 135859954 135860218 + 0.75 NA Intergenic L2b|LINE|L2 -105642 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 206.25-29 chr3 114985960 114986421 + 0.75 NA intron (NM_015642, intron 1 of 9) MamRep1879|DNA|hAT-Tip100? 85224 NM_001164343 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 220-11 chr2 129317619 129318002 + 0.75 NA Intergenic L1MDa|LINE|L1 -43919 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 224.25-3 chr10 89242827 89243163 + 0.75 NA intron (NM_001288979, intron 1 of 7) L2c|LINE|L2 8780 NM_001127605 3988 Hs.643030 NM_000235 ENSG00000107798 LIPA CESD|LAL lipase A, lysosomal acid type protein-coding 223.25-7 chr14 46814188 46814725 + 0.75 NA Intergenic L1PA17|LINE|L1 -162675 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 156.75-11 chr10 50926674 50926887 + 0.75 NA Intergenic Intergenic -41105 NM_001198819 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 162-30 chr16 65434972 65435314 + 0.75 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 141157 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 179.25-39 chr2 8963720 8964026 + 0.75 NA intron (NR_135606, intron 1 of 12) intron (NR_135606, intron 1 of 12) 39811 NR_135603 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 191-40 chr5 11032454 11032824 + 0.75 NA intron (NM_001288715, intron 15 of 20) intron (NM_001288715, intron 15 of 20) -271405 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 158.75-61 chr4 151782232 151782670 + 0.75 NA Intergenic Intergenic -21428 NM_001363341 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 283.75-10 chr8 116058429 116059033 + 0.75 NA intron (NR_046215, intron 7 of 13) intron (NR_046215, intron 7 of 13) 266328 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 161.5-76 chr5 86350929 86351226 + 0.75 NA Intergenic Intergenic 68633 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 265.75-11 chr3 164853534 164854048 + 0.75 NA Intergenic Intergenic -22311 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 165-90 chr8 132391827 132392201 + 0.75 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 55248 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 210-8 chr13 99539464 99539749 + 0.75 NA intron (NM_004800, intron 7 of 16) intron (NM_004800, intron 7 of 16) -37506 NR_126390 104355149 Hs.639387 NR_126390 LINC01039 - long intergenic non-protein coding RNA 1039 ncRNA 207-20 chr2 80872405 80872820 + 0.75 NA Intergenic Intergenic 559233 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 237-8 chr3 120568260 120568762 + 0.75 NA Intergenic Intergenic -27825 NM_001168331 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 246-3 chr12 66568687 66569122 + 0.75 NA intron (NM_001366722, intron 2 of 24) intron (NM_001366722, intron 2 of 24) 110172 NM_001178074 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 FRASRS3|GRIP glutamate receptor interacting protein 1 protein-coding 221.25-15 chr2 41305682 41306147 + 0.75 NA Intergenic Intergenic -571641 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 189.5-62 chr7 11803947 11804460 + 0.75 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 27995 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 190.75-42 chr3 37535032 37535334 + 0.75 NA intron (NM_002207, intron 14 of 27) L2c|LINE|L2 83042 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 202.75-23 chr18 66913866 66914480 + 0.75 NA Intergenic Intergenic -167411 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 154.5-49 chr2 135041402 135041681 + 0.75 NA Intergenic AluSx|SINE|Alu -10751 NM_012233 22930 Hs.306327 NM_012233 ENSG00000115839 RAB3GAP1 P130|RAB3GAP|RAB3GAP130|WARBM1 RAB3 GTPase activating protein catalytic subunit 1 protein-coding 178.5-22 chr14 59648775 59649204 + 0.75 NA intron (NM_021136, intron 3 of 8) L1M2|LINE|L1 -1969 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 206.75-28 chr2 175929082 175929604 + 0.75 NA non-coding (NR_130941, exon 15 of 15) non-coding (NR_130941, exon 15 of 15) 72924 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 165-5 chr1 234057799 234058096 + 0.75 NA intron (NM_173508, intron 2 of 7) AluSx|SINE|Alu 153271 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 266.5-7 chr17 73422768 73423336 + 0.75 NA intron (NM_001144952, intron 14 of 44) (AAAT)n|Simple_repeat|Simple_repeat -90631 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 209.5-34 chr3 29958779 29959238 + 0.75 NA intron (NM_001003792, intron 11 of 13) intron (NM_001003792, intron 11 of 13) -24852 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 146.25-36 chr17 61591148 61591578 + 0.75 NA promoter-TSS (NM_199290) promoter-TSS (NM_199290) -144 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 158.5-62 chr22 27644143 27644468 + 0.75 NA Intergenic L1ME3E|LINE|L1 157451 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 211.75-3 chr1 71774531 71774923 + 0.75 NA intron (NM_173808, intron 3 of 6) intron (NM_173808, intron 3 of 6) 62285 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 178.75-33 chr2 198249509 198249933 + 0.75 NA Intergenic Intergenic 125376 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 269.25-16 chr6 88720447 88720989 + 0.75 NA intron (NM_001286428, intron 11 of 13) intron (NM_001286428, intron 11 of 13) -181349 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 283-6 chr2 102939218 102939828 + 0.75 NA Intergenic Intergenic -43801 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 211-27 chr3 160252465 160253066 + 0.75 NA intron (NR_148401, intron 18 of 18) MER4A1_|LTR|ERV1 27129 NM_001168214 401097 Hs.729755 NM_001168214 ENSG00000180044 C3orf80 - chromosome 3 open reading frame 80 protein-coding 251-13 chr8 92882366 92882832 + 0.75 NA TTS (NM_001171795) TTS (NM_001171795) 82990 NM_001191036 286144 Hs.440643 NM_001171795 ENSG00000205133 TRIQK C8orf83|PRO0845|UPF0599 triple QxxK/R motif containing protein-coding 174.5-39 chr2 133270204 133270623 + 0.75 NA intron (NR_110294, intron 4 of 4) L1MC5a|LINE|L1 4218 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 241-8 chr12 129493126 129493539 + 0.75 NA intron (NM_133448, intron 3 of 8) MIR|SINE|MIR 284731 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 163.25-20 chr11 101655749 101656177 + 0.75 NA Intergenic L1MEf|LINE|L1 -71956 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 167.5-35 chr19 48247383 48247863 + 0.75 NA intron (NM_001351782, intron 3 of 14) intron (NM_001351782, intron 3 of 14) 2010 NR_033680 22900 Hs.68846 NM_014959 ENSG00000105483 CARD8 CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN caspase recruitment domain family member 8 protein-coding 281.75-11 chr3 196672494 196673079 + 0.75 NA Intergenic AluJr|SINE|Alu 33092 NM_198565 375387 Hs.702186 NM_198565 ENSG00000174004 NRROS ELLP3030|GARPL1|LRRC33|UNQ3030 negative regulator of reactive oxygen species protein-coding 234.5-5 chr14 31759203 31759581 + 0.75 NA intron (NM_001201574, intron 1 of 5) intron (NM_001201574, intron 1 of 5) 44823 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 159.25-75 chr8 64113663 64114110 + 0.75 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 254672 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 174.25-62 chr7 16175387 16175663 + 0.75 NA intron (NM_001101426, intron 9 of 9) intron (NM_001101426, intron 9 of 9) -34961 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 241.25-18 chr4 60189812 60190162 + 0.75 NA Intergenic Intergenic -732632 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 201.25-3 chr1 99107275 99107601 + 0.75 NA intron (NR_033940, intron 1 of 2) intron (NR_033940, intron 1 of 2) -102577 NM_001010861 163404 Hs.483948 NM_001010861 ENSG00000117598 PLPPR5 LPPR5|PAP2|PAP2D|PRG5 phospholipid phosphatase related 5 protein-coding 154.5-82 chr6 52106314 52106563 + 0.75 NA Intergenic MIR3|SINE|MIR -18825 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 221.25-33 chr9 34553834 34554361 + 0.75 NA intron (NM_001207011, intron 7 of 9) intron (NM_001207011, intron 7 of 9) -13915 NR_024369 415056 Hs.734229 NR_024369 CNTFR-AS1 - CNTFR antisense RNA 1 ncRNA 200.75-28 chr2 122874951 122875425 + 0.75 NA Intergenic Intergenic 198293 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 177.25-73 chr8 17434720 17435095 + 0.75 NA Intergenic Intergenic -21556 NM_004686 9108 Hs.625674 NM_004686 ENSG00000003987 MTMR7 - myotubularin related protein 7 protein-coding 211.5-30 chr2 78417349 78417864 + 0.75 NA Intergenic MER68|LTR|ERVL -126875 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 149-55 chr21 21270415 21270802 + 0.75 NA intron (NM_001352592, intron 2 of 18) intron (NM_001352592, intron 2 of 18) 123446 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 177-56 chr6 40839938 40840383 + 0.75 NA Intergenic L1MD2|LINE|L1 183120 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 171.5-57 chr21 27430850 27431121 + 0.75 NA Intergenic L2|LINE|L2 -291394 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 155.5 chr1 42706511 42706827 + 0.75 NA Intergenic L1MA4A|LINE|L1 23533 NR_132737 4904 Hs.473583 NM_004559 ENSG00000065978 YBX1 BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1 Y-box binding protein 1 protein-coding 250.25-20 chr3 90633905 90634424 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 1526543 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 155.25-87 chr8 83642350 83642717 + 0.75 NA Intergenic Intergenic 238775 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 179.25-10 chr10 28114663 28115081 + 0.75 NA intron (NR_134518, intron 10 of 16) intron (NR_134518, intron 10 of 16) -41494 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 147.5-4 chr1 172391442 172391727 + 0.75 NA intron (NM_001350206, intron 20 of 20) intron (NM_001350206, intron 20 of 20) -29101 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 309-4 chr16 69134060 69134606 + 0.75 NA intron (NM_001318391, intron 2 of 16) L2b|LINE|L2 1684 NM_032830 84916 Hs.461113 NM_032830 ENSG00000141076 UTP4 CIRH1A|CIRHIN|NAIC|TEX292 UTP4 small subunit processome component protein-coding 216.25-29 chr8 90521277 90521893 + 0.75 NA Intergenic Intergenic 84478 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 224.25-15 chr17 73648918 73649278 + 0.75 NA Intergenic MER33|DNA|hAT-Charlie -4653 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 196.5-48 chr6 131422854 131423129 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR -150235 NM_001244438 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 167-58 chr4 60007681 60007970 + 0.75 NA Intergenic Intergenic -914794 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 323.5-6 chr3 7285926 7286604 + 0.75 NA intron (NM_000844, intron 2 of 9) intron (NM_000844, intron 2 of 9) 249019 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 206.25-11 chr12 2421048 2421542 + 0.75 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 151519 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 260.75 chr1 115569341 115569989 + 0.75 NA Intergenic Intergenic -72305 NM_138959 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 147.5-53 chr20 25376946 25377235 + 0.75 NA intron (NM_001042472, intron 1 of 12) intron (NM_001042472, intron 1 of 12) 13745 NM_001042472 26090 Hs.441550 NM_015600 ENSG00000100997 ABHD12 ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2|hABHD12 abhydrolase domain containing 12 protein-coding 270-11 chr3 155001560 155002240 + 0.75 NA Intergenic MER33|DNA|hAT-Charlie -22224 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 153.25-4 chr1 41743127 41743359 + 0.75 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 175679 NM_024503 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 169-5 chr1 196409168 196409669 + 0.75 NA intron (NM_001287820, intron 12 of 26) L1MB1|LINE|L1 173063 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 167-63 chr4 146561064 146561412 + 0.75 NA Intergenic Intergenic -39267 NM_001317817 84068 Hs.659209 NM_032128 ENSG00000120519 SLC10A7 C4orf13|P7|SSASKS solute carrier family 10 member 7 protein-coding 173.75-71 chr8 123388403 123388686 + 0.75 NA intron (NM_014109, intron 1 of 27) AluSz|SINE|Alu 7903 NM_014109 29028 Hs.370834 NM_014109 ENSG00000156802 ATAD2 ANCCA|CT137|PRO2000 ATPase family AAA domain containing 2 protein-coding 146.5-111 chr9 35744379 35744827 + 0.75 NA intron (NM_020944, intron 2 of 16) intron (NM_020944, intron 2 of 16) 4625 NM_001330660 57704 Hs.443134 NM_020944 ENSG00000070610 GBA2 AD035|NLGase|SPG46 glucosylceramidase beta 2 protein-coding 257.25-12 chr16 2000951 2001457 + 0.75 NA intron (NM_178167, intron 8 of 13) intron (NM_178167, intron 8 of 13) 8617 NM_178167 90850 Hs.343828 NM_178167 ENSG00000167962 ZNF598 HEL2 zinc finger protein 598 protein-coding 215-24 chr4 43623063 43623402 + 0.75 NA Intergenic Intergenic -130689 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 228.5-36 chr3 88460198 88460811 + 0.75 NA intron (NM_001368168, intron 2 of 2) intron (NM_001368168, intron 2 of 2) 122048 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 191-50 chr8 62070190 62070682 + 0.75 NA Intergenic L1MB2|LINE|L1 -178418 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 197-22 chr2 115369031 115369357 + 0.75 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 25379 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 198.25-34 chr3 189397291 189397769 + 0.75 NA Intergenic AluYf1|SINE|Alu -156936 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 160.75-55 chr2 11436718 11437016 + 0.75 NA Intergenic LTR33A|LTR|ERVL 29294 NM_001278276 1876 Hs.603093 NM_198256 ENSG00000169016 E2F6 E2F-6 E2F transcription factor 6 protein-coding 290-2 chr2 189594357 189594819 + 0.75 NA Intergenic Intergenic -13777 NM_014585 30061 Hs.643005 NM_014585 ENSG00000138449 SLC40A1 FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3 solute carrier family 40 member 1 protein-coding 213.75-37 chr7 52754837 52755389 + 0.75 NA Intergenic MER68|LTR|ERVL -280520 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 238-19 chr6 160865350 160865951 + 0.75 NA Intergenic Intergenic -126077 NR_120425 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 266.5-5 chr14 81658281 81658846 + 0.75 NA Intergenic (CTTT)n|Simple_repeat|Simple_repeat -35502 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 296.5-9 chr21 19650071 19650658 + 0.75 NA Intergenic Intergenic 249391 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 273.5 chr1 117051957 117052548 + 0.75 NA intron (NR_110786, intron 1 of 3) AluSz|SINE|Alu 7238 NR_110786 101929099 Hs.559118 NR_110786 ENSG00000236137 LOC101929099 - uncharacterized LOC101929099 ncRNA 177.25 chr1 13993687 13993983 + 0.75 NA Intergenic Intergenic 244420 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 155.25-59 chr3 156721791 156722065 + 0.75 NA Intergenic Intergenic 45264 NM_001184718 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 209-15 chr15 94196662 94196985 + 0.75 NA Intergenic MIRb|SINE|MIR -88885 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 165.5-101 chr9 80070041 80070309 + 0.75 NA Intergenic Intergenic 95152 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 154.25-37 chr17 55762079 55762516 + 0.75 NA intron (NM_001102402, intron 1 of 5) MER92B|LTR|ERV1 11192 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 371 chr5 156706748 156707579 + 0.75 NA intron (NM_001128209, intron 6 of 7) intron (NM_001128209, intron 6 of 7) -143132 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 279.75-5 chr15 63791466 63791891 + 0.75 NA intron (NM_003922, intron 1 of 77) intron (NM_003922, intron 1 of 77) 42270 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 259-8 chr3 120941833 120942354 + 0.75 NA intron (NR_145517, intron 2 of 8) intron (NR_145517, intron 2 of 8) 33416 NM_001348344 9515 Hs.477315 NM_014980 ENSG00000145087 STXBP5L LLGL4 syntaxin binding protein 5 like protein-coding 163.25-77 chr8 14410509 14411007 + 0.75 NA intron (NM_001322881, intron 2 of 6) L1PA8|LINE|L1 442752 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 256-8 chr3 192287757 192288349 + 0.75 NA intron (NM_004113, intron 4 of 5) intron (NM_004113, intron 4 of 5) 49423 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 225-4 chr11 78041605 78042092 + 0.75 NA intron (NM_001203262, intron 1 of 2) LTR17|LTR|ERV1 4343 NM_001282406 65987 Hs.709780 NM_023930 ENSG00000151364 KCTD14 - potassium channel tetramerization domain containing 14 protein-coding 275-16 chr6 73698701 73699321 + 0.75 NA intron (NM_001159588, intron 2 of 31) intron (NM_001159588, intron 2 of 31) 2808 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 163.5-104 chr7 9559469 9559771 + 0.75 NA Intergenic Intergenic -74650 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 258.5-10 chr2 11981137 11981791 + 0.75 NA Intergenic MIRc|SINE|MIR -25652 NR_110197 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 175.5-93 chr8 77587174 77587601 + 0.75 NA Intergenic Intergenic 136690 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 171.25-18 chr12 91697112 91697408 + 0.75 NA Intergenic HERV16-int|LTR|ERVL 444453 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 238.5-10 chr10 118393729 118394319 + 0.75 NA Intergenic Intergenic 36916 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 170.75-5 chr11 38967951 38968255 + 0.75 NA Intergenic Intergenic 319245 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 274.75 chr1 17038646 17039199 + 0.75 NA intron (NM_003000, intron 2 of 7) L1MEf|LINE|L1 15248 NM_003000 6390 Hs.465924 NM_003000 ENSG00000117118 SDHB CWS2|IP|PGL4|SDH|SDH1|SDH2|SDHIP succinate dehydrogenase complex iron sulfur subunit B protein-coding 203.5-53 chr4 113010025 113010484 + 0.75 NA intron (NM_001354275, intron 2 of 43) intron (NM_001354275, intron 2 of 43) -39160 NM_001354235 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 184-26 chr2 96232023 96232484 + 0.75 NA intron (NR_046322, intron 1 of 3) MER47B|DNA|TcMar-Tigger 17614 NR_145789 109623481 NR_145789 SNORA112 - small nucleolar RNA, H/ACA box 112 snoRNA 193-51 chr7 89111020 89111329 + 0.75 NA intron (NM_181646, intron 1 of 3) L1MC2|LINE|L1 -315437 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 205.75-9 chr1 194071408 194072005 + 0.75 NA Intergenic Intergenic 766961 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 160.5-22 chr11 110727397 110727780 + 0.75 NA Intergenic L1MCa|LINE|L1 -14399 NM_001258418 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 169-77 chr9 68783060 68783576 + 0.75 NA 3' UTR (NM_138333, exon 1 of 1) 3' UTR (NM_138333, exon 1 of 1) 3253 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 210.5-55 chr9 125935792 125936141 + 0.75 NA intron (NR_024122, intron 4 of 7) intron (NR_024122, intron 4 of 7) 187783 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding 178.75-67 chr8 96355422 96355762 + 0.75 NA Intergenic MIRb|SINE|MIR 31056 NR_125829 102724804 Hs.571415 NR_125828 ENSG00000253105 LOC102724804 - uncharacterized LOC102724804 ncRNA 154.25-26 chr12 80396997 80397324 + 0.75 NA Intergenic Intergenic -47075 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 209-37 chr4 118019340 118019726 + 0.75 NA Intergenic Intergenic -13789 NR_146513 9348 Hs.480596 NM_004784 ENSG00000164100 NDST3 HSST3 N-deacetylase and N-sulfotransferase 3 protein-coding 225.25-4 chr1 191335224 191335724 + 0.75 NA Intergenic Intergenic -106976 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 262.25-16 chr8 14377021 14377444 + 0.75 NA intron (NM_001322881, intron 2 of 6) MER21C|LTR|ERVL 476278 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 170.25-68 chr7 17300230 17300499 + 0.75 NA intron (NM_001621, intron 1 of 10) intron (NM_001621, intron 1 of 10) 1712 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 162-39 chr2 183701965 183702265 + 0.75 NA Intergenic Intergenic 577672 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 242.5-36 chr5 122426163 122426676 + 0.75 NA intron (NR_131761, intron 5 of 12) intron (NR_131761, intron 5 of 12) 35330 NR_131761 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 269.5-16 chr5 153142301 153142753 + 0.75 NA Intergenic Intergenic -170178 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 335-2 chr12 81879971 81880723 + 0.75 NA Intergenic Intergenic -73372 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 221.75-16 chr16 76003415 76003802 + 0.75 NA Intergenic Intergenic -273793 NM_001322181 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 158-42 chr2 173169021 173169424 + 0.75 NA intron (NM_133646, intron 2 of 11) intron (NM_133646, intron 2 of 11) 93376 NM_133646 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 186-15 chr17 72294422 72294775 + 0.75 NA Intergenic Intergenic -48213 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 220.5-3 chr10 96768737 96769291 + 0.75 NA Intergenic L1MEg|LINE|L1 18748 NR_026712 728658 Hs.645344 NR_026712 ENSG00000236552 RPL13AP5 RPL13A_8_1086|bA196N24.2 ribosomal protein L13a pseudogene 5 pseudo 264.5-9 chr15 38426101 38426508 + 0.75 NA Intergenic AluSg|SINE|Alu -27823 NM_173611 283742 Hs.6799 NM_173611 ENSG00000171262 FAM98B - family with sequence similarity 98 member B protein-coding 177-54 chr5 110502265 110502630 + 0.75 NA intron (NM_001039763, intron 12 of 13) intron (NM_001039763, intron 12 of 13) 11468 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 157.5-27 chr14 21948108 21948325 + 0.75 NA Intergenic Intergenic -277199 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 165.75-93 chr7 49477423 49477882 + 0.75 NA Intergenic L1PA15|LINE|L1 -295986 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 164.75-28 chr17 26882253 26882579 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 206825 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 154.5-47 chr2 118646267 118646607 + 0.75 NA Intergenic L1ME4a|LINE|L1 -43471 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 188.5-23 chr17 61265985 61266472 + 0.75 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 101476 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 169.5-76 chr5 105743253 105743609 + 0.75 NA Intergenic Intergenic 643957 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 171.75-11 chr10 52836709 52837056 + 0.75 NA Intergenic Intergenic -65182 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 293.75-2 chr12 81329521 81330178 + 0.75 NA intron (NM_001282536, intron 18 of 29) intron (NM_001282536, intron 18 of 29) 39520 NM_001220479 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 267.75-4 chr12 10080563 10081010 + 0.75 NA intron (NM_001297749, intron 1 of 3) MER5A|DNA|hAT-Charlie 18199 NM_001297751 51267 Hs.29549 NM_016511 ENSG00000150048 CLEC1A CLEC-1|CLEC1 C-type lectin domain family 1 member A protein-coding 241.75-6 chr13 42092915 42093305 + 0.75 NA intron (NM_178009, intron 1 of 29) AluJb|SINE|Alu 44462 NM_152910 160851 Hs.630380 NM_152910 ENSG00000102780 DGKH DGKeta diacylglycerol kinase eta protein-coding 239.25-10 chr14 76056899 76057517 + 0.75 NA intron (NR_045664, intron 3 of 7) intron (NR_045664, intron 3 of 7) 71445 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 146.5-9 chr10 10895137 10895382 + 0.75 NA intron (NM_001326328, intron 2 of 15) intron (NM_001326328, intron 2 of 15) 56904 NR_024411 254312 Hs.498620 NR_015413 ENSG00000229240 LINC00710 - long intergenic non-protein coding RNA 710 ncRNA 241-18 chr20 9753323 9753895 + 0.75 NA intron (NM_177990, intron 1 of 9) intron (NM_177990, intron 1 of 9) 85467 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 151.75-45 chr2 21589340 21589625 + 0.75 NA Intergenic Intergenic 121170 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 268-11 chr3 82561280 82561789 + 0.75 NA Intergenic Intergenic 575392 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 198.5-13 chr12 1457196 1457537 + 0.75 NA intron (NR_027948, intron 19 of 19) L4_A_Mam|LINE|RTE-X -43125 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 157.75-57 chr2 201869607 201869958 + 0.75 NA intron (NM_001366386, intron 10 of 13) intron (NM_001366386, intron 10 of 13) 63203 NM_001261436 65061 Hs.348711 NM_139158 ENSG00000138395 CDK15 ALS2CR7|PFTAIRE2|PFTK2 cyclin dependent kinase 15 protein-coding 181.5-20 chr13 105407633 105408099 + 0.75 NA Intergenic Intergenic -58001 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 152-84 chr6 102447727 102448075 + 0.75 NA Intergenic L1MC4a|LINE|L1 1048916 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 194-53 chr7 102016613 102017180 + 0.75 NA intron (NM_001202544, intron 2 of 21) intron (NM_001202544, intron 2 of 21) 199270 NM_181552 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 168.75-40 chr2 35873000 35873376 + 0.75 NA Intergenic HAL1|LINE|L1 401783 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 195-50 chr9 106724283 106724650 + 0.75 NA Intergenic Intergenic 108408 NR_104145 100996590 Hs.147110 NR_104145 ENSG00000234323 LINC01505 - long intergenic non-protein coding RNA 1505 ncRNA 166.75-53 chr3 97117628 97118048 + 0.75 NA intron (NM_001080448, intron 3 of 17) MamSINE1|SINE|tRNA-RTE 303244 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 189.5-5 chr1 244703820 244704155 + 0.75 NA intron (NM_016076, intron 4 of 4) intron (NM_016076, intron 4 of 4) 50861 NM_001297746 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 351.75-3 chr11 15391808 15392386 + 0.75 NA Intergenic Intergenic 242995 NM_001278314 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 215-14 chr2 203131752 203132319 + 0.75 NA exon (NM_001114132, exon 25 of 55) exon (NM_001114132, exon 25 of 55) -106406 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 168.5-26 chr14 66228316 66228617 + 0.75 NA Intergenic LTR8|LTR|ERV1 -257905 NR_110307 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 164-37 chr2 123374973 123375372 + 0.75 NA Intergenic Intergenic -301691 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 229.75-26 chr4 143482564 143483145 + 0.75 NA Intergenic Intergenic -30848 NM_003601 8467 Hs.558422 NM_003601 ENSG00000153147 SMARCA5 ISWI|SNF2H|WCRF135|hISWI|hSNF2H SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 protein-coding 209-38 chr5 44634405 44634892 + 0.75 NA Intergenic L2|LINE|L2 -124366 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 219-17 chr4 168906729 168907189 + 0.75 NA intron (NM_001367567, intron 5 of 11) intron (NM_001367567, intron 5 of 11) 74864 NM_001367569 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 247.5-3 chr1 175064462 175064962 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR -3121 NM_022093 63923 Hs.156369 NM_022093 ENSG00000120332 TNN TN-W tenascin N protein-coding 230.75-35 chr6 38366117 38366506 + 0.75 NA intron (NM_052893, intron 7 of 11) intron (NM_052893, intron 7 of 11) -115285 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 227-2 chr12 59233432 59233773 + 0.75 NA Intergenic Intergenic -313064 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 229.25-14 chr2 53162178 53162866 + 0.75 NA Intergenic Intergenic -459907 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 171.75-54 chr4 43120809 43121162 + 0.75 NA Intergenic THE1A-int|LTR|ERVL-MaLR 227719 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 245.5-22 chr3 62517900 62518315 + 0.75 NA intron (NM_003716, intron 14 of 29) intron (NM_003716, intron 14 of 29) -144557 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 194.25-47 chr8 82318582 82318980 + 0.75 NA Intergenic Intergenic -476495 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 247-11 chr15 90343309 90343741 + 0.75 NA Intergenic MLT1K|LTR|ERVL-MaLR 5922 NR_028287 23766 Hs.592014 NR_028287 GABARAPL3 ATG8D GABA type A receptor associated protein like 3 pseudogene pseudo 200.5-40 chr3 130749262 130749664 + 0.75 NA Intergenic L1M5|LINE|L1 -2634 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 222.5-50 chr7 87635792 87636225 + 0.75 NA intron (NM_138290, intron 1 of 11) L1ME3A|LINE|L1 7610 NM_001134405 154661 Hs.411488 NM_138290 ENSG00000105784 RUNDC3B RPIB9|RPIP9 RUN domain containing 3B protein-coding 226.75-19 chr3 71717913 71718254 + 0.75 NA intron (NM_173359, intron 2 of 7) intron (NM_173359, intron 2 of 7) 7319 NM_001134651 317649 Hs.581355 NM_173359 ENSG00000163412 EIF4E3 eIF-4E3|eIF4E-3 eukaryotic translation initiation factor 4E family member 3 protein-coding 190.75-51 chr5 10679716 10680120 + 0.75 NA 3' UTR (NM_001291963, exon 3 of 3) 3' UTR (NM_001291963, exon 3 of 3) 81316 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 158-27 chr16 83424693 83424965 + 0.75 NA intron (NM_001220489, intron 5 of 12) intron (NM_001220489, intron 5 of 12) -83517 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 197.5-4 chr1 163736746 163737299 + 0.75 NA Intergenic L1MEf|LINE|L1 -313831 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 174.5-27 chr14 67807697 67808042 + 0.75 NA exon (NM_015346, exon 5 of 42) exon (NM_015346, exon 5 of 42) 8721 NM_015346 23503 Hs.98041 NM_015346 ENSG00000072121 ZFYVE26 FYVE-CENT|SPG15 zinc finger FYVE-type containing 26 protein-coding 330.75 chr10 50799432 50800192 + 0.75 NA 3' UTR (NM_001198819, exon 15 of 15) 3' UTR (NM_001198819, exon 15 of 15) 59876 NM_001321957 653308 Hs.659820 NM_001079516 ENSG00000204147 ASAH2B ASAH2C|ASAH2L|bA449O16.3|bA98I6.3 N-acylsphingosine amidohydrolase 2B protein-coding 180.75-60 chr7 36591716 36592056 + 0.75 NA intron (NM_001177507, intron 11 of 19) intron (NM_001177507, intron 11 of 19) 8234 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 160.25-3 chr1 155559703 155560033 + 0.75 NA intron (NM_018489, intron 1 of 27) intron (NM_018489, intron 1 of 27) -2174 NR_147963 645676 Hs.568693 NR_027023 ENSG00000235919 ASH1L-AS1 - ASH1L antisense RNA 1 ncRNA 194-50 chr6 91352071 91352513 + 0.75 NA Intergenic Intergenic -169368 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 244.5-7 chr14 44001650 44002089 + 0.75 NA Intergenic MIRc|SINE|MIR 505414 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 246.25-8 chr10 65529604 65530110 + 0.75 NA Intergenic Intergenic -41568 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 178.75-25 chr19 29847047 29847449 + 0.75 NA Intergenic L1M5|LINE|L1 35257 NM_001322261 898 Hs.244723 NM_001238 ENSG00000105173 CCNE1 CCNE|pCCNE1 cyclin E1 protein-coding 228.5-35 chr3 48122603 48123090 + 0.75 NA Intergenic Intergenic -33998 NM_030885 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 247.75-18 chr20 12518978 12519357 + 0.75 NA Intergenic L1ME2|LINE|L1 417796 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 209.75-32 chr5 89909863 89910484 + 0.75 NA Intergenic Intergenic 106547 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 302.5-7 chr3 59646821 59647373 + 0.75 NA intron (NR_149028, intron 1 of 3) MIRb|SINE|MIR 11400 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 157.25-2 chr1 80082254 80082704 + 0.75 NA Intergenic Intergenic -453276 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 216.5-14 chr18 62233942 62234448 + 0.75 NA intron (NR_144409, intron 11 of 31) intron (NR_144409, intron 11 of 31) 46940 NM_001346235 57614 Hs.465323 NM_020854 ENSG00000134444 RELCH HsT3308|HsT885|KIAA1468 RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing protein-coding 163.5-27 chr14 56957456 56957803 + 0.75 NA Intergenic Intergenic 144471 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 201.75-33 chr5 158300021 158300437 + 0.75 NA Intergenic Intergenic 109544 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 184.5-13 chr10 29623347 29623653 + 0.75 NA intron (NM_001323599, intron 3 of 38) intron (NM_001323599, intron 3 of 38) 11471 NM_021738 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 233.75-19 chr3 169775210 169775734 + 0.75 NA intron (NR_033703, intron 2 of 7) MIRb|SINE|MIR 1207 NM_001185119 55892 Hs.507025 NM_018657 ENSG00000085274 MYNN OSZF|SBBIZ1|ZBTB31|ZNF902 myoneurin protein-coding 231-5 chr12 1757913 1758329 + 0.75 NA intron (NM_024551, intron 2 of 7).2 intron (NM_024551, intron 2 of 7).2 -62146 NM_001163925 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 167.5-9 chr1 179691239 179691515 + 0.75 NA TTS (NM_001199092) TTS (NM_001199092) -36399 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 162-24 chr14 42857928 42858178 + 0.75 NA Intergenic Intergenic 1251197 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 242.25 chr1 45516106 45516541 + 0.75 NA intron (NM_181696, intron 2 of 5) intron (NM_181696, intron 2 of 5) 5561 NM_181697 5052 Hs.180909 NM_002574 ENSG00000117450 PRDX1 MSP23|NKEF-A|NKEFA|PAG|PAGA|PAGB|PRX1|PRXI|TDPX2 peroxiredoxin 1 protein-coding 148.75-50 chr2 142390330 142390617 + 0.75 NA Intergenic Intergenic -258772 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 172.75-34 chr2 73884114 73884533 + 0.75 NA Intergenic L1ME3G|LINE|L1 -8685 NM_001199893 72 Hs.516105 NM_001615 ENSG00000163017 ACTG2 ACT|ACTA3|ACTE|ACTL3|ACTSG|VSCM actin gamma 2, smooth muscle protein-coding 154-56 chr2 141645359 141645617 + 0.75 NA intron (NM_018557, intron 2 of 90) (TTTT)n|Simple_repeat|Simple_repeat 486213 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 191.5-25 chr17 31697055 31697319 + 0.75 NA Intergenic L3|LINE|CR1 121776 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 163.75-80 chrX 96889538 96889856 + 0.75 NA intron (NM_007309, intron 5 of 26) L2a|LINE|L2 5789 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 148.5-99 chr8 121146892 121147135 + 0.75 NA Intergenic Intergenic -334967 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 229-14 chr3 3104462 3104907 + 0.75 NA intron (NM_175725, intron 4 of 10) intron (NM_175725, intron 4 of 10) 5690 NM_175724 3568 Hs.68876 NM_000564 ENSG00000091181 IL5RA CD125|CDw125|HSIL5R3|IL5R interleukin 5 receptor subunit alpha protein-coding 253.5-28 chr9 110709604 110710219 + 0.75 NA intron (NM_001166281, intron 5 of 11) AluJr|SINE|Alu -18351 NM_001369398 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 171.25-51 chr6 62005787 62006233 + 0.75 NA intron (NR_146874, intron 3 of 13) L1MEd|LINE|L1 280215 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 205.75-17 chr11 96214148 96214681 + 0.75 NA intron (NM_032427, intron 1 of 4) MIRb|SINE|MIR -127024 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 211.75-28 chr4 174703057 174703533 + 0.75 NA intron (NM_006529, intron 5 of 9) intron (NM_006529, intron 5 of 9) 125952 NM_006529 8001 Hs.413099 NM_006529 ENSG00000145451 GLRA3 - glycine receptor alpha 3 protein-coding 209-41 chr7 7242258 7242738 + 0.75 NA intron (NM_020156, intron 3 of 3) intron (NM_020156, intron 3 of 3) -12656 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 179.25-77 chr8 138518984 138519480 + 0.75 NA Intergenic MLT2B2|LTR|ERVL -21502 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 204.5-26 chr3 167393014 167393539 + 0.75 NA intron (NR_126353, intron 1 of 3) intron (NR_126353, intron 1 of 3) 480 NR_126353 104310350 Hs.581631 NR_126353 ENSG00000241669 LINC01327 TCONS_00005644 long intergenic non-protein coding RNA 1327 ncRNA 151.25-57 chr3 18707929 18708184 + 0.75 NA Intergenic L1MA2|LINE|L1 -262464 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 178.25-44 chr4 44610719 44611170 + 0.75 NA Intergenic Intergenic 40697 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 161.25-28 chr16 78887710 78887999 + 0.75 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 712883 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 230.5-15 chr2 15047762 15048269 + 0.75 NA Intergenic L2b|LINE|L2 415298 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 194-17 chr12 88251929 88252378 + 0.75 NA Intergenic Intergenic 109846 NM_001366579 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 152.25-75 chr5 9508918 9509218 + 0.75 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) -2265 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 165-97 chrX 145185330 145185609 + 0.75 NA Intergenic Intergenic -62034 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 194.25-23 chr2 189185408 189185785 + 0.75 NA Intergenic Intergenic -5835 NM_000393 1290 Hs.445827 NM_000393 ENSG00000204262 COL5A2 EDSC|EDSCL2 collagen type V alpha 2 chain protein-coding 250.5-19 chr22 48235617 48236117 + 0.75 NA Intergenic Intergenic -38497 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 175.75-5 chr10 8784807 8785207 + 0.75 NA Intergenic Intergenic -112982 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 212.75-34 chr8 88449205 88449746 + 0.75 NA Intergenic L1MC2|LINE|L1 -121992 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 159-87 chr9 35032086 35032463 + 0.75 NA Intergenic L1MEd|LINE|L1 -8821 NM_001040411 138724 Hs.148250 NM_203299 ENSG00000174038 C9orf131 - chromosome 9 open reading frame 131 protein-coding 198.5-58 chr9 25981965 25982452 + 0.75 NA Intergenic Intergenic -84467 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 175.25-33 chr2 17040783 17041085 + 0.75 NA Intergenic L1MC4a|LINE|L1 -375100 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 271-7 chr20 5398256 5398729 + 0.75 NA Intergenic Intergenic 47256 NR_038239 100507629 Hs.121383 NR_038239 ENSG00000226995 LINC00658 - long intergenic non-protein coding RNA 658 ncRNA 257.5-19 chr5 74179656 74180446 + 0.75 NA Intergenic MIR3|SINE|MIR 128274 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 296.25-11 chr6 134054447 134054970 + 0.75 NA Intergenic Intergenic -2084 NM_145176 154091 Hs.486508 NM_145176 ENSG00000146411 SLC2A12 GLUT12|GLUT8 solute carrier family 2 member 12 protein-coding 169.75-16 chr10 86445158 86445535 + 0.75 NA intron (NM_001318328, intron 16 of 18) MER2|DNA|TcMar-Tigger 76438 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 200-26 chr2 18443265 18443647 + 0.75 NA Intergenic L1ME3G|LINE|L1 117197 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 172.25-34 chr2 210178726 210179042 + 0.75 NA Intergenic L1MD3|LINE|L1 -7475 NM_001307976 151050 Hs.282260 NM_152519 ENSG00000144445 KANSL1L C2orf67|MSL1v2 KAT8 regulatory NSL complex subunit 1 like protein-coding 222.75-21 chr3 21067517 21068035 + 0.75 NA Intergenic Intergenic -337950 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 195.5-41 chr3 67925256 67925742 + 0.75 NA intron (NR_109992, intron 6 of 6) L1ME2|LINE|L1 -66093 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 197-17 chr2 48285298 48285649 + 0.75 NA Intergenic LTR10A|LTR|ERV1 -29209 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 183.75-85 chr7 7294172 7294584 + 0.75 NA Intergenic (A)n|Simple_repeat|Simple_repeat 39224 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 160.25-56 chr5 41803985 41804256 + 0.75 NA intron (NR_157114, intron 9 of 15) intron (NR_157114, intron 9 of 15) 39537 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 238.25-3 chr10 56020217 56020741 + 0.75 NA Intergenic Intergenic 340780 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 241.75-28 chr8 140478731 140479201 + 0.75 NA Intergenic THE1A|LTR|ERVL-MaLR -20387 NM_031466 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 178.75-27 chr2 32022103 32022496 + 0.75 NA intron (NM_001321210, intron 5 of 5) intron (NM_001321210, intron 5 of 5) -11291 NR_126034 51072 Hs.444969 NM_015955 ENSG00000162959 MEMO1 C2orf4|CGI-27|MEMO|NS5ATP7 mediator of cell motility 1 protein-coding 205-25 chr2 84678806 84679275 + 0.75 NA intron (NM_001370, intron 41 of 76) Charlie20a|DNA|hAT-Charlie 162585 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 170.75-70 chr8 88515112 88515414 + 0.75 NA Intergenic Intergenic -187780 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 163-8 chr10 27107521 27107831 + 0.75 NA Intergenic Intergenic -7178 NM_014915 22852 Hs.361041 NM_014915 ENSG00000107890 ANKRD26 THC2|bA145E8.1 ankyrin repeat domain 26 protein-coding 177-35 chr20_KI270871v1_alt 26525 27000 + 0.75 NA intron (NM_172109, intron 4 of 6) HERVIP10FH-int|LTR|ERV1 6477 NM_172109 3785 Hs.161851 NM_004518 ENSG00000075043 KCNQ2 BFNC|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2 potassium voltage-gated channel subfamily Q member 2 protein-coding 171.25-45 chr4 95671701 95672241 + 0.75 NA Intergenic Intergenic -122998 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 151.5-10 chr10 39431006 39431233 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 734523 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 228.5-19 chr12 19966104 19966524 + 0.75 NA Intergenic Intergenic -48371 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 177.75-72 chr8 62275764 62276267 + 0.75 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 27161 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 277-13 chr9 103339225 103339801 + 0.75 NA Intergenic L2|LINE|L2 -14480 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 244-24 chr6 53071554 53072087 + 0.75 NA intron (NM_033481, intron 2 of 12) L1ME4a|LINE|L1 847 NM_012347 26268 Hs.216653 NM_012347 ENSG00000112146 FBXO9 FBX9|NY-REN-57|VCIA1|dJ341E18.2 F-box protein 9 protein-coding 167.25-11 chr11 91451561 91451888 + 0.75 NA Intergenic Intergenic -582522 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 150.5-105 chr6 71596863 71597297 + 0.75 NA Intergenic L1MEc|LINE|L1 176053 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 158-14 chr11 104709440 104709689 + 0.75 NA Intergenic L2a|LINE|L2 -100262 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 159.5-90 chr7 88569819 88570285 + 0.75 NA Intergenic L1MC3|LINE|L1 -189648 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 182.75-28 chr16 87133753 87134180 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR 76182 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 233.25-13 chr16 86281947 86282611 + 0.75 NA intron (NR_104139, intron 1 of 5) MIR|SINE|MIR 3968 NR_104139 101154687 Hs.640512 NR_104139 LINC01081 TCONS00024764|TCONS_00024764 long intergenic non-protein coding RNA 1081 ncRNA 237.75-7 chr13 87581293 87581707 + 0.75 NA intron (NR_033829, intron 1 of 5) L1MB8|LINE|L1 37240 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 177.75-23 chr17 32731228 32731522 + 0.75 NA intron (NM_015194, intron 14 of 21) L1MEd|LINE|L1 145749 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 306.25-10 chr5 83406087 83406846 + 0.75 NA Intergenic Intergenic -65208 NM_001164097 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 154.75-69 chr3 195861915 195862290 + 0.75 NA Intergenic L1ME4b|LINE|L1 -1698 NR_134939 101929697 Hs.551750 NR_134939 LINC01983 - long intergenic non-protein coding RNA 1983 ncRNA 150.75-76 chr5 144577187 144577559 + 0.75 NA Intergenic L2c|LINE|L2 371982 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 192.25-61 chr8 105600705 105601221 + 0.75 NA intron (NM_001362837, intron 4 of 7) intron (NM_001362837, intron 4 of 7) 281420 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 152.25-32 chr16 83963149 83963430 + 0.75 NA intron (NM_182981, intron 5 of 5) intron (NM_182981, intron 5 of 5) -5343 NM_019065 54550 Hs.140950 NM_019065 ENSG00000103154 NECAB2 EFCBP2|stip-2 N-terminal EF-hand calcium binding protein 2 protein-coding 159.75-33 chr14 68353072 68353349 + 0.75 NA intron (NM_133509, intron 8 of 10) MER94|DNA|hAT-Blackjack 275577 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 214.75-41 chr5 111407461 111407792 + 0.75 NA intron (NM_001744, intron 5 of 10) (AAC)n|Simple_repeat|Simple_repeat -104600 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 162.5-83 chr7 53073700 53074195 + 0.75 NA Intergenic AluY|SINE|Alu 38314 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 269.5-20 chr7 96641134 96641681 + 0.75 NA intron (NR_163950, intron 2 of 6) L1M4|LINE|L1 22931 NR_038948 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 194-41 chr5 44174224 44174497 + 0.75 NA Intergenic L1PA13|LINE|L1 -214372 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 147.25-91 chr7 14086077 14086347 + 0.75 NA Intergenic L1MEg2|LINE|L1 -94787 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 176.25-20 chr12 123566881 123567212 + 0.75 NA Intergenic AluSx1|SINE|Alu 17281 NR_110049 101927415 Hs.636524 NR_110049 TMED2-DT - TMED2 divergent transcript ncRNA 235.75-5 chr10 105283631 105284136 + 0.75 NA Intergenic Intergenic 536450 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 186.5-13 chr12 6297318 6297644 + 0.75 NA Intergenic FLAM_C|SINE|Alu -12955 NM_018173 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 244.5-10 chr14 83068716 83069303 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger 426377 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 304.75-2 chr18 739172 739721 + 0.75 NA intron (NM_005433, intron 9 of 11) AluJr|SINE|Alu -26782 NR_148711 55556 Hs.658550 NM_017512 ENSG00000132199 ENOSF1 FUCD|RTS|TYMSAS enolase superfamily member 1 protein-coding 171.5-27 chr13 99617048 99617349 + 0.75 NA intron (NR_104592, intron 1 of 9) intron (NR_104592, intron 1 of 9) 10508 NR_104592 171425 Hs.655642 NM_206808 ENSG00000125246 CLYBL CLB citrate lyase beta like protein-coding 167.5-28 chr16 52769141 52769667 + 0.75 NA Intergenic Intergenic -162429 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 264.25-10 chr15 92076220 92076763 + 0.75 NA intron (NR_135775, intron 2 of 10) intron (NR_135775, intron 2 of 10) 222187 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 184-25 chr2 35181503 35181910 + 0.75 NA Intergenic Intergenic -289699 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 248.5-14 chr3 140361939 140362452 + 0.75 NA intron (NM_022131, intron 2 of 16) L1MB8|LINE|L1 146594 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 152-83 chr6 101377702 101378033 + 0.75 NA Intergenic Intergenic -21118 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 265.75-15 chr5 143294784 143295325 + 0.75 NA 3' UTR (NM_001204265, exon 7 of 7) 3' UTR (NM_001204265, exon 7 of 7) 102554 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 244.75-2 chr1 205818234 205818757 + 0.75 NA Intergenic MIRb|SINE|MIR -5297 NM_173854 254428 Hs.20274 NM_173854 ENSG00000133065 SLC41A1 MgtE solute carrier family 41 member 1 protein-coding 177-63 chr7 88399043 88399351 + 0.75 NA Intergenic Intergenic -92303 NM_024636 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 311.25-7 chr22 33199573 33200076 + 0.75 NA Intergenic L2a|LINE|L2 91295 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 190.5-10 chr10 131563153 131563765 + 0.75 NA Intergenic Intergenic 226740 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 189.25-25 chr19 37097693 37098156 + 0.75 NA non-coding (NR_138039, exon 6 of 6) non-coding (NR_138039, exon 6 of 6) 19491 NM_001329516 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 263-13 chr7 16593651 16594267 + 0.75 NA Intergenic Intergenic 51795 NM_020319 57037 Hs.157378 NM_020319 ENSG00000106524 ANKMY2 ZMYND20 ankyrin repeat and MYND domain containing 2 protein-coding 264.25-6 chr13 56653474 56654137 + 0.75 NA Intergenic AluSq2|SINE|Alu -487113 NM_001130407 729250 Hs.525056 NM_001130407 ENSG00000234278 PRR20E PRR20|PRR20A|PRR20B|PRR20C|PRR20D proline rich 20E protein-coding 245.75-14 chr3 79853103 79853766 + 0.75 NA Intergenic Intergenic -85436 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 284.75-8 chr22 27377237 27377719 + 0.75 NA Intergenic Intergenic 66827 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 205.5-35 chr5 25195515 25195843 + 0.75 NA intron (NR_136209, intron 1 of 3) Tigger3c|DNA|TcMar-Tigger 4726 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 172.25-44 chr3 147028643 147028966 + 0.75 NA Intergenic L2c|LINE|L2 106881 NR_135560 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 164-3 chr1 153062025 153062451 + 0.75 NA Intergenic L1MC3|LINE|L1 -4726 NM_005988 6700 Hs.355542 NM_005988 ENSG00000241794 SPRR2A - small proline rich protein 2A protein-coding 216.5-6 chr10 82996122 82996512 + 0.75 NA Intergenic Intergenic 680772 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 282-3 chr11 115623492 115624123 + 0.75 NA Intergenic Intergenic 110955 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 147.5-30 chr15 68149813 68150187 + 0.75 NA intron (NM_016166, intron 6 of 13) L1ME4a|LINE|L1 56110 NM_001286694 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 212-19 chr2 69841460 69841760 + 0.75 NA intron (NM_178439, intron 4 of 13) L2c|LINE|L2 11950 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 272.5-5 chr11 104529180 104529821 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL 79802 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 159.75-96 chr8 129840396 129840725 + 0.75 NA 3' UTR (NM_001353253, exon 14 of 14) 3' UTR (NM_001353253, exon 14 of 14) -53936 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 274.75-13 chr4 31701824 31702281 + 0.75 NA Intergenic Intergenic 195508 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 159-36 chr2 105204040 105204450 + 0.75 NA Intergenic Intergenic -37498 NM_007227 11250 Hs.590903 NM_007227 ENSG00000135973 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 194.75-22 chr2 119553538 119553871 + 0.75 NA intron (NR_073132, intron 3 of 24) MER106B|DNA|hAT-Charlie 9255 NM_001271049 200373 Hs.496753 NM_001029996 ENSG00000163075 CFAP221 FAP221|PCDP1 cilia and flagella associated protein 221 protein-coding 164.75-51 chr22 39845298 39845850 + 0.75 NA intron (NM_152512, intron 3 of 6) HAL1b|LINE|L1 48186 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 184.75-50 chr3 87463825 87464127 + 0.75 NA Intergenic L1MA3|LINE|L1 -187392 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 218-20 chr4 52179949 52180405 + 0.75 NA Intergenic L1MC3|LINE|L1 128873 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 159.75-90 chr7 11862169 11862627 + 0.75 NA Intergenic AluY|SINE|Alu -30200 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 169.5-18 chr11 28691799 28692286 + 0.75 NA Intergenic MER1B|DNA|hAT-Charlie -214494 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 180-35 chr2 159058783 159059149 + 0.75 NA intron (NM_001350065, intron 3 of 27) intron (NM_001350065, intron 3 of 27) 90326 NR_146421 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 196.25-38 chr21 30477601 30477873 + 0.75 NA Intergenic L1MA5A|LINE|L1 2630 NM_181607 337882 Hs.61552 NM_181607 ENSG00000184351 KRTAP19-1 KAP19.1 keratin associated protein 19-1 protein-coding 288-10 chr8 3278106 3278594 + 0.75 NA intron (NM_033225, intron 26 of 69) intron (NM_033225, intron 26 of 69) -549899 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 162.5-12 chr10 25804919 25805200 + 0.75 NA Intergenic Tigger2a|DNA|TcMar-Tigger 128651 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 194-28 chr22 25631233 25631831 + 0.75 NA intron (NM_001362778, intron 2 of 19) intron (NM_001362778, intron 2 of 19) 66857 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 157.5-50 chr2 171402980 171403274 + 0.75 NA intron (NM_024770, intron 1 of 9) L1MC3|LINE|L1 30863 NM_001321162 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 220-33 chr8 117503385 117503816 + 0.75 NA Intergenic Intergenic -17113 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 172-87 chr8 117410103 117410399 + 0.75 NA Intergenic LTR79|LTR|ERVL -110462 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 199-33 chr6 119773978 119774440 + 0.75 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) 224401 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 189.25-15 chr13 107497719 107498145 + 0.75 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 33316 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 225.5-45 chr6 77316656 77317040 + 0.75 NA Intergenic Intergenic 147174 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 165.5-61 chr3 186277273 186277580 + 0.75 NA intron (NM_001346, intron 9 of 24) MIRb|SINE|MIR 84808 NM_001346 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 206.75-31 chr2 203902868 203903299 + 0.75 NA Intergenic L1M4|LINE|L1 -33665 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 253.5-22 chr6 62426602 62427303 + 0.75 NA Intergenic Intergenic -140725 NM_001350622 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 149.75-33 chr18 13401982 13402289 + 0.75 NA intron (NM_181482, intron 3 of 5) intron (NM_181482, intron 3 of 5) 25399 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 319.25-5 chr5 161539495 161540283 + 0.75 NA intron (NM_000813, intron 4 of 9) Tigger1|DNA|TcMar-Tigger 8235 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 162.25-71 chr5 74101363 74101790 + 0.75 NA Intergenic MER20|DNA|hAT-Charlie 206749 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 174-52 chr5 54244124 54244609 + 0.75 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 66207 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 150-3 chr1 65399406 65399829 + 0.75 NA intron (NM_001256864, intron 14 of 18) L1MB1|LINE|L1 -21035 NM_001003680 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 161.5-75 chr5 18527566 18527869 + 0.75 NA Intergenic Intergenic 720443 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 314.25-4 chr6 55795357 55795956 + 0.75 NA intron (NM_001329754, intron 2 of 5) intron (NM_001329754, intron 2 of 5) 79934 NM_001329756 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 277-8 chr5 28525071 28525727 + 0.75 NA Intergenic Intergenic -237734 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 241.5-13 chr2 191701198 191701644 + 0.75 NA intron (NR_131917, intron 2 of 2) Tigger1|DNA|TcMar-Tigger 11240 NR_131917 105747689 Hs.104972 NR_131917 LOC105747689 - uncharacterized LOC105747689 ncRNA 367.75-3 chr14 38131329 38132105 + 0.75 NA Intergenic L1MA9|LINE|L1 -76187 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 174.25-78 chr9 83134813 83135285 + 0.75 NA Intergenic L1MB7|LINE|L1 -71907 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 163.5-112 chr8 57673669 57673926 + 0.75 NA Intergenic Intergenic -72352 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 242.75-18 chr2 202794577 202795075 + 0.75 NA intron (NM_001288623, intron 10 of 12) L1M4|LINE|L1 34408 NM_001288624 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 158.75-82 chr8 91087046 91087338 + 0.75 NA TTS (NM_016023) TTS (NM_016023) -15427 NR_148895 100130742 Hs.733070 NM_001129890 ENSG00000214954 LRRC69 - leucine rich repeat containing 69 protein-coding 150.75-53 chr20 59100953 59101372 + 0.75 NA Intergenic L1MC1|LINE|L1 -58316 NR_037929 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 168-34 chr2 40584163 40584554 + 0.75 NA Intergenic L1MC4|LINE|L1 -71923 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 173-4 chr1 68799382 68799677 + 0.75 NA Intergenic MIR1_Amn|SINE|MIR -256369 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 234.25-17 chr4 30906915 30907394 + 0.75 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 186785 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 284.5 chr11 43414525 43414971 + 0.75 NA exon (NM_018259, exon 16 of 24) exon (NM_018259, exon 16 of 24) 55828 NM_018259 55761 Hs.191186 NM_018259 ENSG00000052841 TTC17 - tetratricopeptide repeat domain 17 protein-coding 252.75-5 chr11 90684586 90685281 + 0.75 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) -129076 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 163.25-86 chr8 127768094 127768338 + 0.75 NA Intergenic Intergenic -26317 NR_003367 5820 Hs.133107 NR_003367 ENSG00000249859 PVT1 LINC00079|MIR1204HG|NCRNA00079|onco-lncRNA-100 Pvt1 oncogene ncRNA 301.75-14 chr8 78402650 78403160 + 0.75 NA Intergenic Intergenic -113435 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 257-6 chr22 25901206 25901641 + 0.75 NA intron (NM_001318245, intron 29 of 43) intron (NM_001318245, intron 29 of 43) 159235 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 184.5-58 chr4 129101212 129101699 + 0.75 NA intron (NM_001099783, intron 1 of 5) intron (NM_001099783, intron 1 of 5) 5303 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 160.75-31 chr13 69345283 69345528 + 0.75 NA Intergenic Intergenic 123059 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 148.75-90 chr6 79898853 79899165 + 0.75 NA Intergenic AluJb|SINE|Alu 48544 NM_022726 6785 Hs.101915 NM_022726 ENSG00000118402 ELOVL4 ADMD|CT118|ISQMR|SCA34|STGD2|STGD3 ELOVL fatty acid elongase 4 protein-coding 165.75-42 chr2 69160581 69160901 + 0.75 NA intron (NM_032208, intron 13 of 17) MER103C|DNA|hAT-Charlie 57059 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 202.75-25 chr2 55754233 55754581 + 0.75 NA Intergenic L1ME3B|LINE|L1 -60563 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 228.5-13 chr11 55369402 55369990 + 0.75 NA TTS (NM_001005275) TTS (NM_001005275) 1812 NM_001005275 81328 Hs.554529 NM_001005275 ENSG00000181958 OR4A15 OR11-118 olfactory receptor family 4 subfamily A member 15 protein-coding 185.75-75 chr7 14156869 14157214 + 0.75 NA intron (NM_001350717, intron 24 of 24) intron (NM_001350717, intron 24 of 24) -165616 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 209-10 chr11 129572854 129573292 + 0.75 NA Intergenic LTR16E2|LTR|ERVL 44196 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 218.25-2 chr1 63463746 63464145 + 0.75 NA intron (NM_001347145, intron 4 of 7) L1MC4|LINE|L1 59328 NM_001347147 23421 Hs.166539 NM_014288 ENSG00000142856 ITGB3BP CENP-R|CENPR|HSU37139|NRIF3|TAP20 integrin subunit beta 3 binding protein protein-coding 195-23 chr18 12674393 12674903 + 0.75 NA non-coding (NR_073537, exon 11 of 13) non-coding (NR_073537, exon 11 of 13) 15909 NM_147163 56984 Hs.464652 NM_020232 ENSG00000128789 PSMG2 CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 proteasome assembly chaperone 2 protein-coding 201.5-2 chr1 173052165 173052567 + 0.75 NA Intergenic MIRc|SINE|MIR -1403 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 201.5-22 chr17 66824416 66824860 + 0.75 NA Intergenic Intergenic -10479 NM_145811 27091 Hs.278907 NM_014404 ENSG00000075429 CACNG5 - calcium voltage-gated channel auxiliary subunit gamma 5 protein-coding 291.5 chr14 54668443 54669021 + 0.75 NA intron (NM_015589, intron 1 of 11) MIR|SINE|MIR -86101 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 178.25-78 chr9 115796765 115797195 + 0.75 NA Intergenic HAL1|LINE|L1 -52741 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 151.25-55 chr22 40704062 40704374 + 0.75 NA Intergenic AluSx|SINE|Alu 25040 NM_005297 2847 Hs.248122 NM_005297 ENSG00000128285 MCHR1 GPR24|MCH-1R|MCH1R|SLC-1|SLC1 melanin concentrating hormone receptor 1 protein-coding 249.25-18 chr6 164317880 164318316 + 0.75 NA Intergenic MIR|SINE|MIR 503965 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 146.75-23 chr12 108071373 108071715 + 0.75 NA Intergenic MER33|DNA|hAT-Charlie -57744 NM_014653 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 205-39 chr4 133195845 133196176 + 0.75 NA Intergenic MIRb|SINE|MIR 46716 NM_020815 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 188.75-20 chr15 85289661 85290201 + 0.75 NA Intergenic Intergenic 49580 NM_001310153 100133220 Hs.454625 NM_001310153 GOLGA6L3 - golgin A6 family like 3 protein-coding 227.25-27 chr7 25956796 25957202 + 0.75 NA Intergenic MamRTE1|LINE|RTE-BovB -7013 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 210.25-23 chr2 178458887 178459362 + 0.75 NA intron (NM_001353776, intron 5 of 5) intron (NM_001353776, intron 5 of 5) 5885 NM_001369912 494513 Hs.87734 NM_001042702 ENSG00000204311 PJVK DFNB59 pejvakin protein-coding 166.5-54 chr4 11874413 11874983 + 0.75 NA Intergenic L1MC1|LINE|L1 91520 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 169-10 chr11 21325580 21325979 + 0.75 NA intron (NM_201551, intron 14 of 18) L1ME2z|LINE|L1 656193 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 164-27 chr19 53669355 53669683 + 0.75 NA TTS (NR_030181).2 TTS (NR_030181).2 356 NR_030180 574458 NR_030180 ENSG00000207645 MIR512-1 MIRN512-1|mir-512-1 microRNA 512-1 ncRNA 290.5-3 chr10 115719936 115720395 + 0.75 NA intron (NM_207303, intron 26 of 28) Charlie24|DNA|hAT-Charlie 474624 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 189.25-26 chr2 58732261 58732690 + 0.75 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 211722 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 180.75-34 chr2 122780551 122780963 + 0.75 NA Intergenic Intergenic 292724 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 178.25-79 chrX 42847778 42848152 + 0.75 NA Intergenic L1M4|LINE|L1 -69802 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 178.75-7 chr1 236630250 236630748 + 0.75 NA Intergenic Intergenic -25983 NM_018072 55127 Hs.708114 NM_018072 ENSG00000119285 HEATR1 BAP28|UTP10 HEAT repeat containing 1 protein-coding 232.5-43 chr6 50701012 50701567 + 0.75 NA Intergenic MER90a|LTR|ERV1 -12255 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 177.75-63 chr5 136079777 136080076 + 0.75 NA TTS (NR_030583) TTS (NR_030583) 672 NR_030583 100126299 NR_030583 ENSG00000278815 VTRNA2-1 CBL-3|CBL3|MIR886|MIRN886|VTRNA2|hsa-mir-886|hvg-5|nc886|pre-miR-886|svtRNA2-1a vault RNA 2-1 ncRNA 277.75-11 chr4 31884703 31885126 + 0.75 NA Intergenic Intergenic -112465 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 163.5-105 chr7 12877016 12877355 + 0.75 NA Intergenic Intergenic 189552 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 197-19 chr2 62762290 62762734 + 0.75 NA intron (NM_001142615, intron 3 of 22) L2a|LINE|L2 55615 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 260.75-7 chr12 123046804 123047481 + 0.75 NA intron (NM_020845, intron 1 of 24) intron (NM_020845, intron 1 of 24) -34242 NR_038290 100507091 Hs.683912 NR_038290 ENSG00000251497 PITPNM2-AS1 - PITPNM2 antisense RNA 1 ncRNA 206.75-9 chr10 51726261 51726646 + 0.75 NA intron (NM_001098512, intron 3 of 17) Ricksha|DNA|MULE-MuDR -26858 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 230.25-9 chr11 80118559 80118967 + 0.75 NA Intergenic L2b|LINE|L2 644040 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 186.75-35 chr16 75477659 75478217 + 0.75 NA 3' UTR (NM_021615, exon 3 of 3) 3' UTR (NM_021615, exon 3 of 3) -13201 NM_001304998 124491 Hs.487510 NM_145254 ENSG00000166822 TMEM170A TMEM170 transmembrane protein 170A protein-coding 252.5-11 chr2 55604222 55604601 + 0.75 NA intron (NM_020463, intron 2 of 14) intron (NM_020463, intron 2 of 14) 13211 NM_001122964 57223 Hs.516182 NM_020463 ENSG00000275052 PPP4R3B FLFL2|PP4R3B|PSY2|SMEK2|smk1 protein phosphatase 4 regulatory subunit 3B protein-coding 204-22 chr2 59754118 59754534 + 0.75 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat 536618 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 253.75-2 chr1 173895586 173896041 + 0.75 NA 3' UTR (NM_001346115, exon 4 of 4) 3' UTR (NM_001346115, exon 4 of 4) 21514 NM_001365052 462 Hs.75599 NM_000488 ENSG00000117601 SERPINC1 AT3|AT3D|ATIII|ATIII-R2|ATIII-T1|ATIII-T2|THPH7 serpin family C member 1 protein-coding 185-38 chr2 104849093 104849410 + 0.75 NA intron (NR_037883, intron 1 of 3) intron (NR_037883, intron 1 of 3) 2225 NR_131234 100506421 Hs.437281 NR_037883 ENSG00000233639 PANTR1 LINC01158|linc-Brn1a|linc-POU3F3 POU3F3 adjacent non-coding transcript 1 ncRNA 229.5-29 chr5 41957294 41957786 + 0.75 NA Intergenic Intergenic 32259 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 337.75-4 chr20 59815251 59816151 + 0.75 NA intron (NM_080672, intron 8 of 12) AluSc|SINE|Alu 94491 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 217.25-47 chr9 38757168 38757583 + 0.75 NA Intergenic L2b|LINE|L2 136287 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 275-2 chr11 39513124 39513607 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR 779765 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 279-3 chr12 9213052 9213829 + 0.75 NA Intergenic L1MB7|LINE|L1 -5045 NM_002864 5858 Hs.707491 NM_002864 ENSG00000126838 PZP CPAMD6 PZP alpha-2-macroglobulin like protein-coding 306-6 chr5 11716160 11716821 + 0.75 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -127424 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 156-24 chr14 60027245 60027510 + 0.75 NA intron (NR_075071, intron 27 of 32) intron (NR_075071, intron 27 of 32) -64534 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 188.25-41 chr4 104182540 104183042 + 0.75 NA Intergenic Intergenic -308174 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 204.25-45 chr6 48654905 48655450 + 0.75 NA Intergenic L1MC4|LINE|L1 -586488 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 210-43 chr5 5221815 5222201 + 0.75 NA intron (NM_139056, intron 10 of 22) intron (NM_139056, intron 10 of 22) 81678 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 184.5-23 chr12 14378294 14378673 + 0.75 NA intron (NM_001286515, intron 1 of 12) intron (NM_001286515, intron 1 of 12) -6798 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 159.25-73 chr7 119470319 119470624 + 0.75 NA Intergenic Intergenic 436904 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 169.5-44 chr2 61869598 61869985 + 0.75 NA intron (NM_001256721, intron 11 of 12) AluY|SINE|Alu -15731 NM_001201543 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 167.75-85 chr7 28191933 28192259 + 0.75 NA intron (NR_034097, intron 2 of 3) L1MA6|LINE|L1 -11301 NM_175061 221895 Hs.368944 NM_175061 ENSG00000153814 JAZF1 TIP27|ZNF802 JAZF zinc finger 1 protein-coding 159-10 chr10 45473729 45474082 + 0.75 NA intron (NM_001282866, intron 3 of 7) intron (NM_001282866, intron 3 of 7) -20784 NR_120674 102724323 Hs.559151 NR_120674 ENSG00000231964 LOC102724323 - uncharacterized LOC102724323 ncRNA 196-5 chr10 14757476 14757828 + 0.75 NA intron (NM_031453, intron 1 of 4) intron (NM_031453, intron 1 of 4) 17245 NM_031453 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 221.5-49 chr8 57473435 57474000 + 0.75 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 129930 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 170-44 chr4 80515260 80515730 + 0.75 NA intron (NM_152770, intron 2 of 5) intron (NM_152770, intron 2 of 5) 179775 NM_001206997 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 156.5-16 chr10 6966019 6966302 + 0.75 NA Intergenic Intergenic 186562 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 270.75-20 chr5 11895803 11896607 + 0.75 NA intron (NM_001288717, intron 1 of 20) L1ME4a|LINE|L1 8241 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 211.5-14 chr12 114467070 114467496 + 0.75 NA Intergenic L1MA8|LINE|L1 -58841 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 235.75-23 chr5 44346785 44347374 + 0.75 NA intron (NM_004465, intron 1 of 2) L2a|LINE|L2 -41653 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 199.25-7 chr11 12655891 12656340 + 0.75 NA Intergenic L1MC4|LINE|L1 -18306 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 148.75-64 chr3 136065155 136065402 + 0.75 NA intron (NM_181897, intron 4 of 12) intron (NM_181897, intron 4 of 12) 42536 NM_181897 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 169.5-19 chr11 29698267 29698590 + 0.75 NA Intergenic L1PB1|LINE|L1 79626 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 208.75-34 chr7 15317470 15317762 + 0.75 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) 244399 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 204.75-19 chr16 75967470 75967913 + 0.75 NA Intergenic Intergenic -241201 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 361.75-6 chr8 113026830 113027699 + 0.75 NA intron (NM_001363185, intron 5 of 66) intron (NM_001363185, intron 5 of 66) 349888 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 219.75-35 chr6 165446154 165446566 + 0.75 NA intron (NM_006661, intron 6 of 22) L1MEd|LINE|L1 -136755 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 149.5-74 chr5 67806784 67807146 + 0.75 NA Intergenic Intergenic 13752 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 189.75-39 chr2 122915358 122915735 + 0.75 NA Intergenic Intergenic 157935 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 262.5 chr1 165744773 165745233 + 0.75 NA intron (NM_001256164, intron 5 of 6) intron (NM_001256164, intron 5 of 6) 23865 NM_001366129 54499 Hs.31498 NM_019026 ENSG00000143183 TMCO1 HP10122|PCIA3|PNAS-136|TMCC4 transmembrane and coiled-coil domains 1 protein-coding 187-19 chr2 57475027 57475351 + 0.75 NA Intergenic Intergenic -432462 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 174.25-41 chr3 39258468 39258814 + 0.75 NA Intergenic Intergenic 21395 NM_001337 1524 Hs.78913 NM_001337 ENSG00000168329 CX3CR1 CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28 C-X3-C motif chemokine receptor 1 protein-coding 286.5-9 chr4 100780429 100781129 + 0.75 NA Intergenic Intergenic -105666 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 305.75-4 chr17 66627766 66628386 + 0.75 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) -158996 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 198.75-49 chr8 119772858 119773273 + 0.75 NA intron (NM_003184, intron 18 of 25) intron (NM_003184, intron 18 of 25) 59776 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 245.75-7 chr14 61089912 61090452 + 0.75 NA Intergenic Intergenic -108492 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 238-8 chr14 65920685 65921333 + 0.75 NA Intergenic Intergenic 449907 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 292.5-3 chr14 55190761 55191239 + 0.75 NA intron (NM_001146015, intron 1 of 19) MIR|SINE|MIR 585 NM_014750 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 193.75-32 chr18 44089806 44090151 + 0.75 NA Intergenic L1P4|LINE|L1 441719 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 151.5-59 chr20 57242237 57242509 + 0.75 NA intron (NM_001719, intron 1 of 6) MIR3|SINE|MIR 24268 NM_001719 655 Hs.473163 NM_001719 ENSG00000101144 BMP7 OP-1 bone morphogenetic protein 7 protein-coding 147.5-29 chr15 63814075 63814424 + 0.75 NA intron (NM_003922, intron 1 of 77) intron (NM_003922, intron 1 of 77) 19699 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 174.25-25 chr18 3254270 3254542 + 0.75 NA intron (NM_001303049, intron 3 of 3) intron (NM_001303049, intron 3 of 3) 2193 NM_001303049 10627 Hs.190086 NM_006471 ENSG00000101608 MYL12A HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B myosin light chain 12A protein-coding 241-28 chr5 155010469 155010936 + 0.75 NA Intergenic (TCTC)n|Simple_repeat|Simple_repeat -3053 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 255.5-33 chr5 128291939 128292373 + 0.75 NA intron (NM_001999, intron 48 of 64) intron (NM_001999, intron 48 of 64) 208390 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 234.75-29 chr9 76804268 76804793 + 0.75 NA intron (NM_001308048, intron 6 of 17) intron (NM_001308048, intron 6 of 17) 40094 NR_015342 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 456-2 chr21 35391411 35392160 + 0.75 NA intron (NR_073512, intron 2 of 2) intron (NR_073512, intron 2 of 2) 188979 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 169.75-39 chr2 66102471 66102801 + 0.75 NA Intergenic Intergenic 255692 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 158.75-64 chr5 63101697 63102001 + 0.75 NA Intergenic Intergenic 523030 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 245-2 chr1 190398817 190399343 + 0.75 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 76930 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 148-93 chr8 136934694 136934900 + 0.75 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 403999 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 230-8 chr15 59644453 59644945 + 0.75 NA intron (NM_001320930, intron 4 of 5) L2c|LINE|L2 12606 NM_001320929 2958 Hs.512934 NM_004492 ENSG00000140307 GTF2A2 HsT18745|T18745|TF2A2|TFIIA|TFIIA-12|TFIIA-gamma|TFIIAS general transcription factor IIA subunit 2 protein-coding 182.25-25 chr2 117151634 117152016 + 0.75 NA Intergenic Intergenic -662866 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 241-21 chr3 12283823 12284234 + 0.75 NA Intergenic MER112|DNA|hAT-Charlie -3457 NM_001354666 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 208.5-51 chr5 43086051 43086378 + 0.75 NA intron (NR_102752, intron 2 of 2) LTR49-int|LTR|ERV1 -18775 NR_104651 648987 Hs.649468 NR_034085 ENSG00000177738 LOC648987 - uncharacterized LOC648987 ncRNA 182.25-55 chr7 53271294 53271750 + 0.75 NA Intergenic Intergenic 235889 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 173.5-33 chr2 76974056 76974329 + 0.75 NA intron (NR_146416, intron 1 of 1) (ATAT)n|Simple_repeat|Simple_repeat -11773 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 197.75-42 chr3 110580122 110580600 + 0.75 NA Intergenic Intergenic 489598 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 181-13 chr12 13623011 13623472 + 0.75 NA intron (NM_000834, intron 4 of 12) L1MC5|LINE|L1 -246496 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 182.75-14 chr11 92068482 92068886 + 0.75 NA Intergenic Intergenic -156350 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 209-26 chr2 211636794 211637118 + 0.75 NA intron (NM_001042599, intron 16 of 26) intron (NM_001042599, intron 16 of 26) 789404 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 201.25-30 chr21 23882010 23882303 + 0.75 NA Intergenic AluJb|SINE|Alu 439221 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 260.25-20 chr4 114391981 114392497 + 0.75 NA Intergenic Intergenic -206163 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 209.75-13 chr13 67059289 67059809 + 0.75 NA intron (NM_001318372, intron 2 of 4) L2a|LINE|L2 68663 NR_046637 100874087 Hs.606903 NR_046637 ENSG00000233840 PCDH9-AS4 - PCDH9 antisense RNA 4 ncRNA 154.5-74 chr4 107006381 107006784 + 0.75 NA intron (NM_014421, intron 1 of 3) intron (NM_014421, intron 1 of 3) 29731 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 278.75-14 chrX 25671589 25672161 + 0.75 NA Intergenic Intergenic -466468 NM_173699 286514 Hs.350683 NM_173699 ENSG00000176774 MAGEB18 - MAGE family member B18 protein-coding 231.25-32 chr5 163850741 163851233 + 0.75 NA Intergenic Intergenic 345368 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 183.25-6 chr1 192959262 192959782 + 0.75 NA Intergenic Intergenic -11265 NR_126003 102724954 Hs.243488 NR_126003 LINC01032 - long intergenic non-protein coding RNA 1032 ncRNA 206.75-23 chr2 70969853 70970324 + 0.75 NA Intergenic L1MB8|LINE|L1 -8357 NM_001369683 79998 Hs.512744 NM_024933 ENSG00000144031 ANKRD53 - ankyrin repeat domain 53 protein-coding 312.25-3 chr5 173154661 173155438 + 0.75 NA intron (NM_013980, intron 4 of 5) Tigger18a|DNA|TcMar-Tigger 10518 NM_013980 662 Hs.145726 NM_001205 ENSG00000113734 BNIP1 NIP1|SEC20|TRG-8 BCL2 interacting protein 1 protein-coding 194-30 chr3 99231043 99231498 + 0.75 NA Intergenic L1PA15|LINE|L1 -329575 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 244-3 chr10 112022684 112023113 + 0.75 NA Intergenic LTR81B|LTR|Gypsy 160867 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 156-9 chr10 15846163 15846586 + 0.75 NA intron (NM_024948, intron 2 of 14) intron (NM_024948, intron 2 of 14) 14133 NM_024948 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 248.75-2 chr1 238769940 238770353 + 0.75 NA Intergenic Intergenic -284129 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 205-13 chr13 111584114 111584642 + 0.75 NA Intergenic Intergenic -11631 NR_135814 105370369 NR_135814 ENSG00000215881 LINC02337 - long intergenic non-protein coding RNA 2337 ncRNA 274.25-17 chr8 123339576 123340364 + 0.75 NA intron (NM_014109, intron 19 of 27) AluJo|SINE|Alu -8064 NR_037516 100500863 NR_037516 ENSG00000207704 MIR548AA1 - microRNA 548aa-1 ncRNA 272-9 chr3 26430870 26431270 + 0.75 NA Intergenic Intergenic -191736 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 150.5-39 chr14 41901624 41901953 + 0.75 NA intron (NM_001330106, intron 4 of 4) intron (NM_001330106, intron 4 of 4) 294932 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 169-31 chr2 12661601 12661967 + 0.75 NA Intergenic Intergenic -55088 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 203.5-52 chr4 94712056 94712375 + 0.75 NA Intergenic Intergenic 45318 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 192.5-62 chr9 70484541 70484874 + 0.75 NA Intergenic Intergenic -70050 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 188.75-24 chr17 80301254 80301563 + 0.75 NA intron (NM_020954, intron 11 of 16) L1MA5|LINE|L1 40556 NM_020954 57674 Hs.195642 NM_020914 ENSG00000173821 RNF213 ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57 ring finger protein 213 protein-coding 231-13 chr20 55370307 55370736 + 0.75 NA Intergenic MIR|SINE|MIR -52522 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 284-9 chr7 41321617 41322464 + 0.75 NA Intergenic L1M5|LINE|L1 220436 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 585 chr2 206037252 206038254 + 0.75 NA intron (NM_017759, intron 5 of 10) L1PB4|LINE|L1 48421 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 163.25-66 chr7 4811930 4812391 + 0.75 NA intron (NM_018059, intron 9 of 14) AluJb|SINE|Alu -23521 NR_039800 100616465 NR_039800 ENSG00000264474 MIR4656 - microRNA 4656 ncRNA 255.5-19 chr3 84172583 84173177 + 0.75 NA Intergenic Intergenic 696695 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 166.5-33 chr18 783499 783785 + 0.75 NA intron (NM_005433, intron 1 of 11) AluSq2|SINE|Alu 28600 NM_005433 7525 Hs.194148 NM_005433 ENSG00000176105 YES1 HsT441|P61-YES|Yes|c-yes YES proto-oncogene 1, Src family tyrosine kinase protein-coding 361.75-5 chr8 110567346 110568304 + 0.75 NA Intergenic Intergenic 459608 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 181.75-37 chr20 533489 533875 + 0.75 NA intron (NM_001362770, intron 1 of 14) intron (NM_001362770, intron 1 of 14) 10108 NM_001362771 1457 Hs.644056 NM_001895 ENSG00000101266 CSNK2A1 CK2A1|CKII|Cka1|Cka2|OCNDS casein kinase 2 alpha 1 protein-coding 212.75-7 chr13 103744171 103744548 + 0.75 NA Intergenic Intergenic 319159 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 233-20 chr20 63898940 63899570 + 0.75 NA intron (NM_025219, intron 1 of 4) intron (NM_025219, intron 1 of 4) 4129 NM_025219 80331 Hs.164419 NM_025219 ENSG00000101152 DNAJC5 CLN4|CLN4B|CSP|DNAJC5A|NCL|mir-941-2|mir-941-3|mir-941-4|mir-941-5 DnaJ heat shock protein family (Hsp40) member C5 protein-coding 253.75-14 chr2 17925700 17926219 + 0.75 NA intron (NM_002252, intron 2 of 2) THE1C-int|LTR|ERVL-MaLR 47292 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 148.25-91 chr8 58343640 58343919 + 0.75 NA Intergenic L1M4a2|LINE|L1 -67485 NM_001330535 137886 Hs.155572 NM_001077619 ENSG00000215114 UBXN2B p37 UBX domain protein 2B protein-coding 158.75-40 chr2 58373991 58374417 + 0.75 NA Intergenic MLT1B|LTR|ERVL-MaLR 98327 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 163.75-57 chr5 28553825 28554211 + 0.75 NA Intergenic L1M1|LINE|L1 -266353 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 292.5-7 chr5 58275518 58276348 + 0.75 NA Intergenic Intergenic -153592 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 231.25-24 chr3 32250060 32250393 + 0.75 NA intron (NM_001320308, intron 1 of 2) L1MB7|LINE|L1 11546 NM_178868 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 159.75-17 chr10 88332789 88333077 + 0.75 NA intron (NM_018363, intron 5 of 6) intron (NM_018363, intron 5 of 6) 250385 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 193.5-16 chr12 84298543 84298923 + 0.75 NA Intergenic Intergenic 614066 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 286.75-12 chr6 67365914 67366373 + 0.75 NA Intergenic Intergenic -689208 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 180-21 chr13 92239620 92239922 + 0.75 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 112436 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 164.5-68 chr5 75691043 75691444 + 0.75 NA intron (NM_152408, intron 6 of 10) intron (NM_152408, intron 6 of 10) 21212 NM_152408 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 243-4 chr11 32820208 32820689 + 0.75 NA Intergenic AluJr|SINE|Alu -9479 NM_024081 79056 Hs.471695 NM_024081 ENSG00000135378 PRRG4 PRGP4|TMG4 proline rich and Gla domain 4 protein-coding 163.5-124 chrX 84653935 84654200 + 0.75 NA Intergenic L1MA1|LINE|L1 -151614 NM_001177479 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 189.5-18 chr13 104410220 104410496 + 0.75 NA Intergenic Intergenic 985158 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 154.75-107 chr9 33020170 33020519 + 0.75 NA intron (NM_001368996, intron 1 of 7) L2c|LINE|L2 4776 NM_001369002 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 154.5-33 chr15 74445150 74445491 + 0.75 NA TTS (NM_201265) TTS (NM_201265) -11362 NM_001146029 8482 Hs.24640 NM_003612 ENSG00000138623 SEMA7A CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|SEMAK1|SEMAL semaphorin 7A (John Milton Hagen blood group) protein-coding 191.25-50 chr3 119778381 119778834 + 0.75 NA Intergenic Intergenic -1877 NM_033013 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 298.5-9 chr4 40292718 40293214 + 0.75 NA Intergenic LTR85a|LTR|Gypsy? -14219 NR_121641 101060498 Hs.351492 NR_121640 ENSG00000249241 LINC02265 - long intergenic non-protein coding RNA 2265 ncRNA 168.5-106 chr9 120751397 120751808 + 0.75 NA Intergenic HAL1M8|LINE|L1 -37132 NM_001080497 1955 Hs.744903 NM_001080497 ENSG00000106780 MEGF9 EGFL5 multiple EGF like domains 9 protein-coding 172.25-5 chr10 70846082 70846419 + 0.75 NA intron (NM_003901, intron 3 of 14) intron (NM_003901, intron 3 of 14) 30302 NM_003901 8879 Hs.499984 NM_003901 ENSG00000166224 SGPL1 NPHS14|S1PL|SPL sphingosine-1-phosphate lyase 1 protein-coding 224.5-25 chr5 117600832 117601234 + 0.75 NA Intergenic Intergenic -129328 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 182.75-19 chr13 61372970 61373234 + 0.75 NA Intergenic L1ME3B|LINE|L1 42420 NM_022843 64881 Hs.391781 NM_022843 ENSG00000280165 PCDH20 PCDH13 protocadherin 20 protein-coding 343.75 chr10 74009882 74010800 + 0.75 NA intron (NM_014000, intron 1 of 21) intron (NM_014000, intron 1 of 21) 12225 NM_003373 7414 Hs.643896 NM_003373 ENSG00000035403 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 149-41 chr2 67948926 67949217 + 0.75 NA Intergenic HAL1|LINE|L1 113933 NM_001190265 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 236-35 chr8 119373369 119373759 + 0.75 NA Intergenic Intergenic -42882 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 264.75-8 chr3 67549087 67549722 + 0.75 NA intron (NM_001177599, intron 2 of 10) intron (NM_001177599, intron 2 of 10) 105210 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 184.75-52 chr4 57818486 57818956 + 0.75 NA Intergenic Intergenic 392849 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 169.5-85 chr7 13239465 13239806 + 0.75 NA Intergenic L1ME4a|LINE|L1 552002 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 226-20 chr4 134295928 134296354 + 0.75 NA Intergenic L1PA13|LINE|L1 -94352 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 212.25-47 chr8 89055316 89055787 + 0.75 NA Intergenic L4_A_Mam|LINE|RTE-X 702160 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 168.25-18 chr13 88406289 88406552 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -134409 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 180.5-59 chr5 20380044 20380460 + 0.75 NA intron (NM_001349558, intron 1 of 15) MIRb|SINE|MIR 74701 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 238.75-16 chr2 112678779 112679385 + 0.75 NA Intergenic AluSx1|SINE|Alu 33143 NM_005415 6574 Hs.187946 NM_005415 ENSG00000144136 SLC20A1 GLVR1|Glvr-1|PIT1|PiT-1 solute carrier family 20 member 1 protein-coding 238.25-31 chrX 87710518 87711116 + 0.75 NA Intergenic AluSx|SINE|Alu 193015 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 152.5-42 chr17 72826490 72826793 + 0.75 NA intron (NM_001352692, intron 6 of 9) intron (NM_001352692, intron 6 of 9) -186169 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 256.5-14 chr4 79075157 79075813 + 0.75 NA intron (NR_038342, intron 2 of 5) L1PA15|LINE|L1 103737 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 168-63 chr7 99285083 99285507 + 0.75 NA intron (NR_002147, intron 7 of 15) intron (NR_002147, intron 7 of 15) 11994 NR_002147 84176 Hs.621401 NR_002147 MYH16 MHC20|MYH16P|MYH5 myosin heavy chain 16 pseudogene pseudo 168.75-35 chr18 66332991 66333245 + 0.75 NA Intergenic Intergenic 270972 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 230-6 chr14 71067848 71068380 + 0.75 NA intron (NM_014982, intron 26 of 35) AluSx1|SINE|Alu 160655 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 160.5-91 chr5 79326696 79326918 + 0.75 NA 3' UTR (NM_152405, exon 11 of 11) 3' UTR (NM_152405, exon 11 of 11) 90676 NM_152405 133746 Hs.482605 NM_152405 ENSG00000152409 JMY WHAMM2|WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 229.5-21 chr22 26571093 26571502 + 0.75 NA intron (NM_001362923, intron 1 of 7) L2a|LINE|L2 -5956 NM_001008566 8459 Hs.632768 NM_003595 ENSG00000128294 TPST2 TANGO13B|TPST-2 tyrosylprotein sulfotransferase 2 protein-coding 182.75-68 chr7 122263174 122263571 + 0.75 NA Intergenic L1MC|LINE|L1 -40286 NR_036484 154860 Hs.664204 NR_036484 ENSG00000230316 FEZF1-AS1 - FEZF1 antisense RNA 1 ncRNA 182-49 chr6 11445475 11445813 + 0.75 NA Intergenic L1MEc|LINE|L1 -63296 NR_073131 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 251.5-12 chr15 22859691 22860156 + 0.75 NA intron (NM_030922, intron 6 of 7) intron (NM_030922, intron 6 of 7) 21282 NM_030922 81614 Hs.591003 NM_030922 ENSG00000140157 NIPA2 SLC57A2 NIPA magnesium transporter 2 protein-coding 147.25-100 chr8 112586518 112586979 + 0.75 NA intron (NM_001363185, intron 21 of 66) intron (NM_001363185, intron 21 of 66) -56745 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 212.25-19 chr18 1502048 1502440 + 0.75 NA Intergenic Intergenic -142615 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 146.5-36 chr16 77143655 77143888 + 0.75 NA Intergenic L1MCc|LINE|L1 -47419 NM_014940 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 190.75-64 chr7 138241562 138241846 + 0.75 NA Intergenic Intergenic 117946 NR_039678 100616226 NR_039678 ENSG00000284028 MIR4468 - microRNA 4468 ncRNA 150-98 chr9 96761547 96761803 + 0.75 NA intron (NM_001314060, intron 4 of 4) L1ME3B|LINE|L1 16412 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 215.5-41 chr5 94262137 94262559 + 0.75 NA intron (NM_001145678, intron 20 of 20) L1ME3G|LINE|L1 -150649 NM_001163417 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 161.5-51 chr2 162847613 162847906 + 0.75 NA Intergenic L1MB7|LINE|L1 -8992 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 205-42 chr5 171635145 171635488 + 0.75 NA Intergenic Intergenic -150556 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 151.75-85 chr6 11265275 11265701 + 0.75 NA intron (NM_001142393, intron 2 of 7) intron (NM_001142393, intron 2 of 7) -32806 NM_001271033 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 172-76 chr6 50555852 50556216 + 0.75 NA Intergenic Intergenic -157510 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 166.5-7 chr10 70010334 70010610 + 0.75 NA Intergenic L1MC1|LINE|L1 -42374 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 163.25-89 chr9 108180667 108180966 + 0.75 NA Intergenic L2c|LINE|L2 675170 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 163.5-101 chr6 63963880 63964123 + 0.75 NA intron (NM_001292009, intron 35 of 43) intron (NM_001292009, intron 35 of 43) 157165 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 170.5-76 chr8 107305591 107306018 + 0.75 NA intron (NM_001199859, intron 4 of 8) intron (NM_001199859, intron 4 of 8) 30711 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 160.25-75 chr8 90210884 90211240 + 0.75 NA Intergenic AluJo|SINE|Alu -10426 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 236.25-31 chr6 160146829 160147235 + 0.75 NA intron (NM_153187, intron 8 of 9) intron (NM_153187, intron 8 of 9) 25201 NM_153187 6580 Hs.117367 NM_003057 ENSG00000175003 SLC22A1 HOCT1|OCT1|oct1_cds solute carrier family 22 member 1 protein-coding 164.25-64 chr4 1788645 1789084 + 0.75 NA Intergenic Intergenic -4429 NM_001354809 2261 Hs.1420 NM_000142 ENSG00000068078 FGFR3 ACH|CD333|CEK2|HSFGFR3EX|JTK4 fibroblast growth factor receptor 3 protein-coding 149.5-37 chr18 10377111 10377442 + 0.75 NA Intergenic Intergenic 37094 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 206.25-5 chr10 32107018 32107425 + 0.75 NA Intergenic AluJr|SINE|Alu -50796 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 218.25-14 chr14 45493125 45493632 + 0.75 NA Intergenic L1M1|LINE|L1 222224 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 195-26 chr2 125760093 125760570 + 0.75 NA Intergenic L1MC4|LINE|L1 357654 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 227-20 chr8 128034395 128034759 + 0.75 NA intron (NR_003367, intron 5 of 8) L2b|LINE|L2 -14575 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 198-13 chr2 24689935 24690289 + 0.75 NA intron (NM_001362950, intron 8 of 23) intron (NM_001362950, intron 8 of 23) -103003 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 187-50 chr5 158296521 158296929 + 0.75 NA Intergenic L1MEd|LINE|L1 113048 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 160-14 chr12 64764220 64764570 + 0.75 NA intron (NM_001330187, intron 1 of 13) Arthur1|DNA|hAT-Tip100 4898 NM_001330187 23329 Hs.192492 NM_015279 ENSG00000111490 TBC1D30 - TBC1 domain family member 30 protein-coding 210.25-11 chr14 35975171 35975637 + 0.75 NA Intergenic L1ME1|LINE|L1 -95023 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 250.25 chr1 18642159 18642573 + 0.75 NA intron (NM_001135254, intron 4 of 8) intron (NM_001135254, intron 4 of 8) 11520 NM_001135254 5081 Hs.113253 NM_002584 ENSG00000009709 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 229-12 chr2 207864226 207864800 + 0.75 NA intron (NM_001080475, intron 6 of 7) L3|LINE|CR1 -94607 NM_003468 7855 Hs.17631 NM_003468 ENSG00000163251 FZD5 C2orf31|HFZ5 frizzled class receptor 5 protein-coding 243.25-15 chr3 11608210 11608763 + 0.75 NA intron (NM_014667, intron 2 of 5) intron (NM_014667, intron 2 of 5) -3905 NM_001284391 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 162.25-15 chr12 110403692 110404129 + 0.75 NA promoter-TSS (NM_016238) promoter-TSS (NM_016238) -180 NM_001137664 51434 Hs.719935 NM_016238 ENSG00000196510 ANAPC7 APC7 anaphase promoting complex subunit 7 protein-coding 153.5-67 chr3 188240672 188240938 + 0.75 NA intron (NM_005578, intron 2 of 10) intron (NM_005578, intron 2 of 10) 15400 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 229.5-18 chr2 102519933 102520329 + 0.75 NA intron (NM_001011552, intron 9 of 11) intron (NM_001011552, intron 9 of 11) 46905 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 219.75-20 chr2 103305615 103306029 + 0.75 NA Intergenic Intergenic -321393 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 414-2 chr7 34377828 34378824 + 0.75 NA intron (NR_033665, intron 3 of 3) MER57A-int|LTR|ERV1 -279892 NM_207172 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 282.25-4 chr14 45128989 45129522 + 0.75 NA intron (NM_002013, intron 3 of 6) intron (NM_002013, intron 3 of 6) 5226 NM_002013 2287 Hs.509226 NM_002013 ENSG00000100442 FKBP3 FKBP-25|FKBP-3|FKBP25|PPIase FKBP prolyl isomerase 3 protein-coding 255.5-26 chr4 60363498 60363896 + 0.75 NA Intergenic Intergenic -558922 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 236-28 chr7 12236321 12236967 + 0.75 NA 3' UTR (NM_018374, exon 9 of 9) 3' UTR (NM_018374, exon 9 of 9) 25350 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 161.25-57 chr5 42216616 42216956 + 0.75 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -41441 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 179-43 chr4 36454783 36455088 + 0.75 NA Intergenic Intergenic -28507 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 160.75-97 chr6 143368678 143369054 + 0.75 NA Intergenic Intergenic 73811 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 168.25-53 chr4 112562915 112563311 + 0.75 NA intron (NM_018392, intron 17 of 27) intron (NM_018392, intron 17 of 27) -46933 NM_024019 63973 Hs.744415 NM_024019 ENSG00000178403 NEUROG2 Atoh4|Math4A|NGN2|bHLHa8|ngn-2 neurogenin 2 protein-coding 300-7 chr7 70017012 70017658 + 0.75 NA intron (NM_015570, intron 2 of 18) intron (NM_015570, intron 2 of 18) 418860 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 152-101 chrX 44236982 44237292 + 0.75 NA intron (NM_025184, intron 8 of 14) MER5A|DNA|hAT-Charlie 106535 NM_025184 80258 Hs.521953 NM_025184 ENSG00000183690 EFHC2 MRX74|dJ1158H2.1 EF-hand domain containing 2 protein-coding 226.5-23 chr4 104498226 104498775 + 0.75 NA intron (NR_125926, intron 1 of 9) intron (NR_125926, intron 1 of 9) -3606 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 245.25-22 chr7 85216748 85217157 + 0.75 NA Intergenic Intergenic -95021 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 194.5-40 chr3 47883232 47883571 + 0.75 NA intron (NM_002375, intron 8 of 18) AluSp|SINE|Alu 33846 NR_031595 100302232 NR_031595 ENSG00000221585 MIR1226 MIRN1226|hsa-mir-1226|mir-1226 microRNA 1226 ncRNA 171-37 chr2 225091847 225092290 + 0.75 NA Intergenic L1MC5a|LINE|L1 -49600 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 329.75-2 chr12 44654904 44655667 + 0.75 NA intron (NM_006159, intron 14 of 20) intron (NM_006159, intron 14 of 20) 220376 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 212.25-2 chr1 115117038 115117610 + 0.75 NA Intergenic Intergenic -27821 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 183.75-40 chr2 15290188 15290692 + 0.75 NA intron (NR_052013, intron 41 of 50) intron (NR_052013, intron 41 of 50) 270894 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 159.75-94 chr8 127817196 127817504 + 0.75 NA intron (NR_003367, intron 1 of 8) intron (NR_003367, intron 1 of 8) 21388 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 176.5-17 chr14 32585520 32585801 + 0.75 NA intron (NM_004274, intron 5 of 13) L2c|LINE|L2 256362 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 220.25-30 chr4 75919865 75920299 + 0.75 NA intron (NM_001363719, intron 7 of 8) intron (NM_001363719, intron 7 of 8) -17630 NM_006239 5470 Hs.290873 NM_006239 ENSG00000156194 PPEF2 PPP7CB protein phosphatase with EF-hand domain 2 protein-coding 191.5-14 chr12 4800177 4800471 + 0.75 NA Intergenic Intergenic -8852 NM_002235 3742 Hs.306190 NM_002235 ENSG00000130035 KCNA6 HBK2|KV1.6|PPP1R96 potassium voltage-gated channel subfamily A member 6 protein-coding 253-13 chr9 1789044 1789398 + 0.75 NA Intergenic MIRb|SINE|MIR -226126 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 216.25-22 chr3 95312786 95313297 + 0.75 NA Intergenic Intergenic 370152 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 283.75-12 chr9 102307420 102307994 + 0.75 NA Intergenic L1PA16|LINE|L1 -211930 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 157.5-112 chr8 140437536 140437869 + 0.75 NA intron (NM_001160372, intron 3 of 22) intron (NM_001160372, intron 3 of 22) 20042 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 325.25-5 chr8 119850440 119851329 + 0.75 NA intron (NM_024094, intron 2 of 8) L3|LINE|CR1 5010 NM_024094 79075 Hs.315167 NM_024094 ENSG00000136982 DSCC1 DCC1 DNA replication and sister chromatid cohesion 1 protein-coding 151.5-21 chr11 110285738 110286064 + 0.75 NA intron (NM_001260493, intron 1 of 15) intron (NM_001260493, intron 1 of 15) 10811 NM_001260496 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 266 chr1 87117282 87117907 + 0.75 NA Intergenic Intergenic -12171 NR_026988 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 155.25-63 chr4 47963529 47963939 + 0.75 NA intron (NR_125879, intron 2 of 2) intron (NR_125879, intron 2 of 2) 17799 NM_001142564 1259 Hs.1323 NM_000087 ENSG00000198515 CNGA1 CNCG|CNCG1|CNG-1|CNG1|RCNC1|RCNCa|RCNCalpha|RP49 cyclic nucleotide gated channel alpha 1 protein-coding 161.5-45 chr19 36475581 36475916 + 0.75 NA intron (NM_001145345, intron 2 of 4) intron (NM_001145345, intron 2 of 4) 13687 NM_032838 84924 Hs.533939 NM_032838 ENSG00000186017 ZNF566 - zinc finger protein 566 protein-coding 176-66 chr8 130186270 130186725 + 0.75 NA intron (NM_001362925, intron 7 of 29) intron (NM_001362925, intron 7 of 29) -101729 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 205.75-33 chr2 56762184 56762723 + 0.75 NA Intergenic Intergenic -576683 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 154.25-87 chr8 94482046 94482317 + 0.75 NA Intergenic Intergenic -7066 NM_012415 25788 Hs.30561 NM_006550 ENSG00000197275 RAD54B RDH54 RAD54 homolog B protein-coding 146.25-34 chr17 32457459 32457704 + 0.75 NA intron (NM_002815, intron 3 of 13) intron (NM_002815, intron 3 of 13) 13071 NM_001270482 5717 Hs.443379 NM_002815 ENSG00000108671 PSMD11 Rpn6|S9|p44.5 proteasome 26S subunit, non-ATPase 11 protein-coding 211.5-48 chr8 118683282 118683643 + 0.75 NA intron (NR_038210, intron 3 of 4) L1MC|LINE|L1 -61499 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 282.75-9 chr5 85139256 85139831 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -754663 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 184-48 chr6 76355893 76356252 + 0.75 NA Intergenic Intergenic 237551 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 266.75-13 chr4 31339780 31340348 + 0.75 NA Intergenic Intergenic -166480 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 167.75-64 chr4 55117319 55117599 + 0.75 NA intron (NM_002253, intron 3 of 29) intron (NM_002253, intron 3 of 29) 8136 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 151-17 chr14 59039997 59040290 + 0.75 NA Intergenic Intergenic -148524 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 168.5-10 chr10 54931274 54931669 + 0.75 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -130180 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 179-33 chr20 44190561 44190805 + 0.75 NA Intergenic (AAAT)n|Simple_repeat|Simple_repeat -3105 NM_020433 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 164.5-42 chr2 220638565 220638966 + 0.75 NA Intergenic Intergenic -732200 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 211.75-9 chr13 78651586 78652045 + 0.75 NA intron (NM_024546, intron 1 of 5) intron (NM_024546, intron 1 of 5) 7340 NM_024546 79596 Hs.567576 NM_024546 ENSG00000152193 OBI1 C13orf7|RNF219 ORC ubiquitin ligase 1 protein-coding 186.5-57 chr5 44767447 44767745 + 0.75 NA intron (NR_109865, intron 1 of 2) intron (NR_109865, intron 1 of 2) 41197 NR_109864 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 231.25-39 chr9 92273483 92274153 + 0.75 NA intron (NR_073446, intron 9 of 32) intron (NR_073446, intron 9 of 32) 18729 NR_037424 100500918 NR_037424 ENSG00000281156 MIR3651 mir-3651 microRNA 3651 ncRNA 193-44 chr5 16350165 16350738 + 0.75 NA Intergenic Intergenic 90651 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 151-97 chr8 51069091 51069408 + 0.75 NA Intergenic L1MC3|LINE|L1 740196 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 244.5-6 chr14 27564766 27565181 + 0.75 NA intron (NR_148991, intron 2 of 2) L1MA9|LINE|L1 -47615 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 209.75-47 chrX 67085091 67085651 + 0.75 NA Intergenic L1MA4A|LINE|L1 -446073 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 242.25-26 chrX 40718987 40719416 + 0.75 NA intron (NM_004229, intron 3 of 30) L1MB8|LINE|L1 -16195 NM_001289773 100873985 Hs.460579 NM_001289773 MED14OS MED14-AS1 MED14 opposite strand protein-coding 238.5-26 chr4 32556058 32556695 + 0.75 NA Intergenic Intergenic 205338 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 190.75-17 chr11 97047784 97048181 + 0.75 NA Intergenic AluSx1|SINE|Alu 539557 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 152.5-26 chr14 62587897 62588318 + 0.75 NA Intergenic Intergenic -448134 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 155-25 chr13 99762672 99763010 + 0.75 NA intron (NR_120421, intron 3 of 4) L1MA4|LINE|L1 -33840 NR_046525 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 172.25-28 chr18 39095461 39095878 + 0.75 NA Intergenic L1ME2|LINE|L1 526506 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 170.5-68 chr7 43666805 43667055 + 0.75 NA intron (NR_163914, intron 1 of 8) HUERS-P3b-int|LTR|ERV1 62593 NM_001371317 260.5-5 chr12 39614957 39615809 + 0.75 NA intron (NM_005164, intron 2 of 9) intron (NM_005164, intron 2 of 9) 4420 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 252.75-29 chr9 32020276 32020728 + 0.75 NA Intergenic Intergenic -364101 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 160.75-58 chr2 41244026 41244405 + 0.75 NA Intergenic Intergenic -633340 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 229.25-11 chr17 60062051 60062435 + 0.75 NA intron (NM_022070, intron 9 of 19) intron (NM_022070, intron 9 of 19) 16688 NM_022070 63897 Hs.221899 NM_022070 ENSG00000068097 HEATR6 ABC1 HEAT repeat containing 6 protein-coding 159.75-56 chr21 28979112 28979484 + 0.75 NA intron (NM_015565, intron 6 of 29) L1ME5|LINE|L1 13579 NM_001320766 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 161.5-8 chr1 188357382 188357696 + 0.75 NA Intergenic MSTA-int|LTR|ERVL-MaLR 913911 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 225.25-37 chr8 130008044 130008593 + 0.75 NA TTS (NR_049826) TTS (NR_049826) 135 NR_049826 100847051 NR_049826 ENSG00000264653 MIR5194 mir-5194 microRNA 5194 ncRNA 203.5-50 chr4 78308929 78309393 + 0.75 NA intron (NM_001166133, intron 15 of 41) MLT1D|LTR|ERVL-MaLR 20176 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 203.5-65 chr6 149508836 149509212 + 0.75 NA intron (NM_139126, intron 12 of 12) intron (NM_139126, intron 12 of 12) -24010 NM_207360 340152 Hs.632618 NM_207360 ENSG00000178199 ZC3H12D C6orf95|MCPIP4|TFL|dJ281H8.1|p34 zinc finger CCCH-type containing 12D protein-coding 247-18 chr5 128544228 128544862 + 0.75 NA Intergenic L1MDa|LINE|L1 -6300 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 189.75-17 chr10 65945176 65945606 + 0.75 NA intron (NM_001127384, intron 17 of 17) intron (NM_001127384, intron 17 of 17) 373966 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 195.75-18 chr12 127864121 127864404 + 0.75 NA Intergenic L1PB1|LINE|L1 -17355 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 232.75-8 chr14 51209223 51209789 + 0.75 NA Intergenic Intergenic -30741 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 147-23 chr12 24195597 24195981 + 0.75 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -16632 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 160-70 chr5 168019367 168019647 + 0.75 NA intron (NM_001080428, intron 3 of 24) intron (NM_001080428, intron 3 of 24) -146338 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 246.5-11 chr18 52697577 52698124 + 0.75 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 357653 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 149.5-48 chr2 127383109 127383352 + 0.75 NA Intergenic MSTB|LTR|ERVL-MaLR -35190 NM_000312 5624 Hs.224698 NM_000312 ENSG00000115718 PROC APC|PC|PROC1|THPH3|THPH4 protein C, inactivator of coagulation factors Va and VIIIa protein-coding 146-68 chr5 102028138 102028485 + 0.75 NA Intergenic Intergenic 267973 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 243-15 chr4 6551741 6552211 + 0.75 NA intron (NM_001206994, intron 1 of 9) intron (NM_001206994, intron 1 of 9) 3639 NM_001206995 5522 Hs.479069 NM_020416 ENSG00000074211 PPP2R2C B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2 regulatory subunit Bgamma protein-coding 184-2 chr1 73957397 73957676 + 0.75 NA Intergenic Intergenic 240640 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 180.25-49 chr4 10172085 10172403 + 0.75 NA Intergenic HERVK9-int|LTR|ERVK -55445 NM_005112 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 174.75-65 chr8 49338649 49338955 + 0.75 NA Intergenic Intergenic 173378 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 178.25-29 chr2 73404315 73404645 + 0.75 NA intron (NM_015120, intron 1 of 22) L1MA9|LINE|L1 18722 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 150.25-43 chr17 61156613 61156853 + 0.75 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 210971 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 202.25-23 chr16 57188535 57188985 + 0.75 NA intron (NM_001305163, intron 1 of 14) AluSp|SINE|Alu 2431 NM_001305164 89970 Hs.460885 NM_133368 ENSG00000159579 RSPRY1 SEMDFA ring finger and SPRY domain containing 1 protein-coding 229.5-23 chr3 34842427 34842855 + 0.75 NA Intergenic L2a|LINE|L2 551382 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 165-73 chr6 48596336 48596669 + 0.75 NA Intergenic L1PA17|LINE|L1 -527813 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 188-57 chr8 133016472 133016829 + 0.75 NA intron (NM_003235, intron 37 of 47) intron (NM_003235, intron 37 of 47) 29931 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 249-6 chr2 102927463 102927923 + 0.75 NA Intergenic Intergenic -31971 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 167-23 chr14 57911088 57911437 + 0.75 NA Intergenic L1MC1|LINE|L1 -45170 NM_001306087 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 159.25-38 chr2 145483785 145484084 + 0.75 NA Intergenic L2b|LINE|L2 815967 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 160.5-119 chr9 37631793 37632216 + 0.75 NA intron (NM_001371224, intron 2 of 16) intron (NM_001371224, intron 2 of 16) -18950 NM_014907 22844 Hs.163990 NM_014907 ENSG00000070601 FRMPD1 FRMD2 FERM and PDZ domain containing 1 protein-coding 235.5-32 chr6 141722658 141723092 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR 365924 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 181-46 chr7 89454633 89455151 + 0.75 NA Intergenic MIR|SINE|MIR -659155 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 174.5-51 chr3 80641642 80642023 + 0.75 NA Intergenic Intergenic -123065 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 238.75-32 chr8 71602911 71603380 + 0.75 NA Intergenic Intergenic -55051 NM_001370333 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 310.5 chr11 124252075 124252766 + 0.75 NA Intergenic Intergenic 2744 NR_045681 26494 Hs.448172 NM_001002905 ENSG00000197849 OR8G1 HSTPCR25|OR8G1P|TPCR25 olfactory receptor family 8 subfamily G member 1 (gene/pseudogene) protein-coding 156.5-94 chr6 50194772 50195160 + 0.75 NA Intergenic Intergenic -145037 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 244.75-20 chr6 154957785 154958227 + 0.75 NA Intergenic Intergenic 104646 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 149-109 chrX 85461302 85461683 + 0.75 NA Intergenic L1MA3|LINE|L1 -81827 NM_001307940 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 216.25-31 chr8 99330896 99331408 + 0.75 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 205578 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 185.75-44 chr20 52455183 52455643 + 0.75 NA Intergenic MLT1K|LTR|ERVL-MaLR -165425 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 206.75-40 chr4 94649563 94649994 + 0.75 NA intron (NM_006457, intron 9 of 12) intron (NM_006457, intron 9 of 12) 107755 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 194.5-29 chr17 64686847 64687257 + 0.75 NA Intergenic Intergenic -24745 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 200.75 chr1 50263809 50264313 + 0.75 NA Intergenic L2b|LINE|L2 154228 NM_001324215 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 181.75-15 chr11 81967166 81967462 + 0.75 NA intron (NR_120571, intron 6 of 7) MER92A|LTR|ERV1 -76478 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 256.25-3 chr10 39320836 39321526 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 624585 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 201.75-15 chr16 72109751 72110252 + 0.75 NA intron (NM_014003, intron 25 of 26) L1MC5a|LINE|L1 -15623 NM_001142318 54957 Hs.134406 NM_017853 ENSG00000140830 TXNL4B DLP|Dim2 thioredoxin like 4B protein-coding 274-11 chr6 141519597 141520187 + 0.75 NA Intergenic Intergenic 568907 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 218.5-22 chr3 21870524 21871125 + 0.75 NA Intergenic Intergenic -86315 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 250.5-24 chr6 114840851 114841238 + 0.75 NA Intergenic L1PA16|LINE|L1 -778167 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 216.5-40 chr7 106407762 106408330 + 0.75 NA Intergenic L1MEf|LINE|L1 -123063 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 272-5 chr14 59421383 59422008 + 0.75 NA Intergenic Intergenic 43685 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 180.75-69 chr8 88112862 88113256 + 0.75 NA intron (NM_005941, intron 6 of 9) intron (NM_005941, intron 6 of 9) 214424 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 281-2 chr1 84179164 84179840 + 0.75 NA intron (NM_001300915, intron 5 of 11) intron (NM_001300915, intron 5 of 11) -2130 NM_001242862 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 220.25-44 chr8 131622273 131622720 + 0.75 NA Intergenic L1MC3|LINE|L1 -281597 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 181.25-37 chr3 6975364 6975693 + 0.75 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -81511 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 222.5-31 chr3 72430276 72430696 + 0.75 NA intron (NM_012234, intron 1 of 3) intron (NM_012234, intron 1 of 3) 16137 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 234.25-23 chr9 76884757 76885326 + 0.75 NA intron (NM_001308048, intron 1 of 17) intron (NM_001308048, intron 1 of 17) 21046 NR_131751 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 193.5-28 chr16 77029873 77030282 + 0.75 NA Intergenic MLT1A1|LTR|ERVL-MaLR -161113 NM_014940 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 243.25-20 chr4 32132903 32133404 + 0.75 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -110731 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 205.75-5 chr1 98748766 98749127 + 0.75 NA intron (NM_015976, intron 8 of 8) intron (NM_015976, intron 8 of 8) 87225 NM_001364903 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 148.25-40 chr2 8991130 8991602 + 0.75 NA intron (NR_135603, intron 1 of 13) intron (NR_135603, intron 1 of 13) 12318 NR_135603 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 255.75-5 chr13 21412804 21413182 + 0.75 NA intron (NR_104486, intron 4 of 14) intron (NR_104486, intron 4 of 14) 46310 NM_001330059 253832 Hs.564611 NM_153251 ENSG00000180776 ZDHHC20 4933421L13Rik|DHHC-20|DHHC20 zinc finger DHHC-type containing 20 protein-coding 226.25-7 chr14 50348771 50349281 + 0.75 NA intron (NM_001282236, intron 3 of 8) HAL1|LINE|L1 36702 NM_001370605 27109 Hs.438489 NM_015684 ENSG00000125375 DMAC2L ATP5S|ATPW|FB|HSU79253 distal membrane arm assembly complex 2 like protein-coding 195.5-58 chr6 55931204 55931649 + 0.75 NA Intergenic Intergenic -55836 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 221.75-37 chr9 96635972 96636303 + 0.75 NA Intergenic AluSz6|SINE|Alu -16294 NR_147239 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 275.75-3 chr10 43149739 43150372 + 0.75 NA intron (NM_018590, intron 1 of 7) AluSp|SINE|Alu -4842 NM_001319656 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 217.75-26 chr22 32499004 32499475 + 0.75 NA TTS (NM_012179) TTS (NM_012179) 24002 NM_001257990 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 218.5-29 chr4 114840760 114841161 + 0.75 NA intron (NM_022569, intron 10 of 13) intron (NM_022569, intron 10 of 13) 184201 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 170-45 chr4 115635847 115636086 + 0.75 NA Intergenic L1MC5a|LINE|L1 -522346 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 232.5-2 chr1 48270669 48271158 + 0.75 NA Intergenic Intergenic 48197 NM_001011547 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 177.75-10 chr10 86096730 86096989 + 0.75 NA intron (NM_017551, intron 4 of 15) ERVL-B4-int|LTR|ERVL 167929 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 148-83 chr6 154723752 154724032 + 0.75 NA Intergenic MER119|DNA|hAT-Charlie -9486 NM_014892 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 154.25-36 chr17 30534131 30534459 + 0.75 NA Intergenic Intergenic -42170 NR_015341 107133515 Hs.568209 NR_015341 SMURF2P1-LRRC37BP1 - SMURF2P1-LRRC37BP1 readthrough transcribed pseudogene pseudo 151-106 chr8 126757107 126757545 + 0.75 NA Intergenic MIR|SINE|MIR -198848 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 190.25-8 chr11 84087877 84088261 + 0.75 NA intron (NM_001142699, intron 10 of 27) L1MB7|LINE|L1 185211 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 188.5-16 chr12 65362248 65362693 + 0.75 NA intron (NM_001031679, intron 4 of 6) MLT1L|LTR|ERVL-MaLR 83483 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 169.5-63 chr4 34514363 34514684 + 0.75 NA Intergenic LTR50|LTR|ERVL -244776 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 174.75-40 chr3 107427539 107427963 + 0.75 NA Intergenic Charlie19a|DNA|hAT-Charlie -3179 NR_110039 101929607 Hs.252565 NR_110039 ENSG00000273125 LINC01990 - long intergenic non-protein coding RNA 1990 ncRNA 180-19 chr13 78986798 78987192 + 0.75 NA Intergenic Intergenic -146945 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 184.75-47 chr21 20390765 20391154 + 0.75 NA Intergenic AluSg4|SINE|Alu -132274 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 184-37 chr4 34085750 34086019 + 0.75 NA Intergenic Intergenic -45991 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 167.75-44 chr18 67345415 67345876 + 0.75 NA Intergenic MER1B|DNA|hAT-Charlie -170901 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 286.75-4 chr2 160985440 160986203 + 0.75 NA Intergenic Intergenic -151134 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 148.5-57 chr22 25691484 25691771 + 0.75 NA intron (NM_001362778, intron 11 of 19) intron (NM_001362778, intron 11 of 19) -50561 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 189.75-44 chr21 29169303 29169577 + 0.75 NA intron (NM_001286620, intron 4 of 4) intron (NM_001286620, intron 4 of 4) 23863 NM_001286624 56911 Hs.222802 NM_020152 ENSG00000156265 MAP3K7CL C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4 MAP3K7 C-terminal like protein-coding 147-2 chr1 73025759 73026083 + 0.75 NA Intergenic Intergenic -280249 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 213.25-41 chr6 55380898 55381294 + 0.75 NA intron (NM_207410, intron 6 of 8) intron (NM_207410, intron 6 of 8) 53627 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 240.5-15 chr2 228028484 228029065 + 0.75 NA intron (NM_030623, intron 3 of 10) Tigger3a|DNA|TcMar-Tigger 152871 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 192.75-68 chr9 38730632 38730992 + 0.75 NA Intergenic L1M4a2|LINE|L1 109724 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 177.5-47 chr6 105523294 105523702 + 0.75 NA Intergenic Intergenic -120416 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 196.75-12 chr12 41150110 41150447 + 0.75 NA Intergenic Intergenic -38042 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 188.75-14 chr12 9757215 9757700 + 0.75 NA intron (NM_001781, intron 1 of 4) L1ME2|LINE|L1 3444 NM_001781 969 Hs.208854 NM_001781 ENSG00000110848 CD69 AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3 CD69 molecule protein-coding 176-9 chr11 8559159 8559401 + 0.75 NA intron (NM_030906, intron 1 of 13) intron (NM_030906, intron 1 of 13) 34696 NM_030906 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 256.75-3 chr10 84393390 84393898 + 0.75 NA intron (NM_018999, intron 3 of 10) intron (NM_018999, intron 3 of 10) -31295 NM_001284243 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 198.5-37 chr3 179838850 179839233 + 0.75 NA intron (NM_001349408, intron 8 of 14) intron (NM_001349408, intron 8 of 14) -59153 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 246.25-35 chr6 42792192 42792683 + 0.75 NA intron (NM_001318819, intron 2 of 13) AluJr|SINE|Alu 8941 NR_134654 401261 Hs.656652 NM_001004322 LOC401261 - uncharacterized LOC401261 ncRNA 146.25-83 chr6 164767153 164767541 + 0.75 NA Intergenic L1MC4|LINE|L1 54716 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 263.75-3 chr10 125418384 125418790 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -155784 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 161.75-59 chr4 55498521 55498769 + 0.75 NA intron (NM_004898, intron 2 of 22) intron (NM_004898, intron 2 of 22) 47287 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 184.75-62 chr4 163692883 163693319 + 0.75 NA intron (NM_001166373, intron 4 of 7) ERVL-E-int|LTR|ERVL -79567 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 198-23 chr3 194595233 194595889 + 0.75 NA intron (NM_138399, intron 9 of 10) intron (NM_138399, intron 9 of 10) 11293 NR_047574 100507297 Hs.586059 NR_047573 TMEM44-AS1 - TMEM44 antisense RNA 1 ncRNA 245-17 chr6 46572627 46573028 + 0.75 NA intron (NM_016593, intron 10 of 11) L1M2|LINE|L1 79991 NM_016593 51302 Hs.387367 NM_016593 ENSG00000146233 CYP39A1 - cytochrome P450 family 39 subfamily A member 1 protein-coding 174.5-62 chr4 121995709 121996137 + 0.75 NA Intergenic MIRc|SINE|MIR -43863 NM_001130698 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 170-64 chr8 83856599 83856880 + 0.75 NA Intergenic L1MA3|LINE|L1 -326048 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 268.75-14 chr8 42024371 42024839 + 0.75 NA intron (NM_001305878, intron 2 of 13) L1MA4A|LINE|L1 -27145 NR_136589 105379393 Hs.742878 NR_136589 LOC105379393 - uncharacterized LOC105379393 ncRNA 160.75-42 chr16 5742524 5742751 + 0.75 NA Intergenic Intergenic 110170 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 146.5-8 chr1 237252676 237252920 + 0.75 NA intron (NM_001035, intron 1 of 104) MIRb|SINE|MIR 210614 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 288.5-15 chr4 91646770 91647350 + 0.75 NA Intergenic Intergenic 630242 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 187.5-48 chr3 177638701 177638976 + 0.75 NA intron (NR_047568, intron 3 of 3) L1PB1|LINE|L1 -178027 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 185.75-20 chr14 55089407 55089715 + 0.75 NA Intergenic MLT2C2|LTR|ERVL 37914 NM_144578 93487 Hs.594338 NM_144578 ENSG00000168175 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1 like protein-coding 195.25-51 chr7 38983275 38983597 + 0.75 NA intron (NR_138047, intron 6 of 6) intron (NR_138047, intron 6 of 6) 5527 NM_001370959 11281 Hs.137106 NM_007252 ENSG00000106536 POU6F2 RPF-1|WT5|WTSL POU class 6 homeobox 2 protein-coding 256.75-15 chr21 27765715 27766199 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR 43578 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 182.25-44 chr5 126036643 126037023 + 0.75 NA Intergenic Intergenic -142744 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 232-19 chr3 187964104 187964491 + 0.75 NA TTS (NR_135537) TTS (NR_135537) 12110 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 154.25-2 chr1 24924746 24925092 + 0.75 NA intron (NM_001320672, intron 4 of 6) intron (NM_001320672, intron 4 of 6) 5357 NM_004350 864 Hs.170019 NM_004350 ENSG00000020633 RUNX3 AML2|CBFA3|PEBP2aC RUNX family transcription factor 3 protein-coding 222.5-23 chr2 107537923 107538435 + 0.75 NA intron (NR_146968, intron 2 of 2) intron (NR_146968, intron 2 of 2) 8760 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 193.25-23 chr17 56246022 56246410 + 0.75 NA intron (NM_001370326, intron 3 of 20) intron (NM_001370326, intron 3 of 20) 92741 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 192.25-8 chr10 53202554 53202986 + 0.75 NA Intergenic Intergenic -431070 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 185.25-51 chr22 22140858 22141288 + 0.75 NA Intergenic Intergenic -97139 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 224.25 chr1 78516702 78517354 + 0.75 NA intron (NM_001039585, intron 3 of 3) intron (NM_001039585, intron 3 of 3) 26054 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 166.25-22 chr13 54156984 54157463 + 0.75 NA Intergenic Intergenic -24352 NR_108062 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 163-69 chr5 147131067 147131386 + 0.75 NA Intergenic L1MEf|LINE|L1 -49706 NM_001271900 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 155.25-33 chr17 66551001 66551273 + 0.75 NA intron (NM_002737, intron 3 of 16) AluJr|SINE|Alu -134283 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 317.5-7 chr5 101099112 101099640 + 0.75 NA Intergenic L1PB3|LINE|L1 -196094 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 192.25-46 chr4 55578429 55578861 + 0.75 NA intron (NM_152401, intron 3 of 5) L1MC4a|LINE|L1 13600 NM_152401 132954 Hs.223712 NM_152401 ENSG00000163440 PDCL2 GCPHLP phosducin like 2 protein-coding 216.75-19 chr2 182493189 182493702 + 0.75 NA intron (NM_005019, intron 1 of 14) L1PA5|LINE|L1 29081 NM_005019 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 178.5-19 chr12 62601487 62601883 + 0.75 NA TTS (NR_121682) TTS (NR_121682) 1749 NR_121682 283416 Hs.375881 NM_175895 ENSG00000221949 LINC01465 C12orf61 long intergenic non-protein coding RNA 1465 ncRNA 216.75-27 chr5 67754426 67754854 + 0.75 NA Intergenic L1PB1|LINE|L1 -38573 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 244.5-25 chr4 117442781 117443236 + 0.75 NA intron (NR_125757, intron 2 of 3) L1MA4A|LINE|L1 14610 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 176.25-30 chr16 18941929 18942371 + 0.75 NA Intergenic Tigger16a|DNA|TcMar-Tigger -15746 NM_015092 23049 Hs.460179 NM_015092 ENSG00000157106 SMG1 61E3.4|ATX|LIP SMG1 nonsense mediated mRNA decay associated PI3K related kinase protein-coding 162.75-33 chr17 19496085 19496487 + 0.75 NA Intergenic FLAM_C|SINE|Alu -37568 NM_018242 55244 Hs.232054 NM_018242 ENSG00000142494 SLC47A1 MATE1 solute carrier family 47 member 1 protein-coding 256-2 chr1 245209432 245209962 + 0.75 NA intron (NR_151721, intron 4 of 4) intron (NR_151721, intron 4 of 4) 24820 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 218.5 chr1 73371446 73371817 + 0.75 NA Intergenic LTR73|LTR|ERV1 65461 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 170.75-51 chr5 5085312 5085575 + 0.75 NA Intergenic Intergenic -7132 NR_134266 105374631 Hs.570964 NR_134266 ENSG00000250529 LINC02121 - long intergenic non-protein coding RNA 2121 ncRNA 174.5-41 chr2 154179680 154180067 + 0.75 NA intron (NM_052917, intron 4 of 12) intron (NM_052917, intron 4 of 12) 235479 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 273.5-12 chr6 35949932 35950622 + 0.75 NA intron (NM_001193476, intron 19 of 19) intron (NM_001193476, intron 19 of 19) -29097 NR_034069 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 158.75-69 chr6 74440631 74440965 + 0.75 NA intron (NR_110856, intron 2 of 3) intron (NR_110856, intron 2 of 3) 371347 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 208.5-30 chr2 36480921 36481309 + 0.75 NA intron (NM_016441, intron 7 of 16) intron (NM_016441, intron 7 of 16) 117053 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 185.75-77 chr7 106353238 106353552 + 0.75 NA Intergenic L1PB3|LINE|L1 -68412 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 178.25-4 chr1 111883429 111883768 + 0.75 NA intron (NM_172198, intron 2 of 6) MIRb|SINE|MIR -26059 NR_046619 100873995 Hs.535274 NR_046619 ENSG00000237556 KCND3-AS1 - KCND3 antisense RNA 1 ncRNA 152.25-64 chr3 73641908 73642330 + 0.75 NA Intergenic AluJr4|SINE|Alu -17178 NM_015009 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 228.25-21 chr3 29364182 29364768 + 0.75 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 83163 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 203.25-21 chr2 45469601 45470152 + 0.75 NA intron (NM_018079, intron 16 of 20) intron (NM_018079, intron 16 of 20) 141391 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 256.25-5 chr10 115463651 115464418 + 0.75 NA intron (NM_207303, intron 22 of 28) intron (NM_207303, intron 22 of 28) 370669 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 163.75-14 chr11 38749595 38749904 + 0.75 NA Intergenic L1MEf|LINE|L1 100891 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 147-16 chr11 22099586 22099820 + 0.75 NA Intergenic L1M4|LINE|L1 -93382 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 195.5-69 chr8 101769368 101769929 + 0.75 NA intron (NM_001040625, intron 4 of 6) intron (NM_001040625, intron 4 of 6) 21321 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 220-2 chr11 46090684 46091256 + 0.75 NA intron (NM_001352027, intron 2 of 18) L3|LINE|CR1 29849 NM_001352029 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 190.75-65 chr8 13174968 13175263 + 0.75 NA intron (NM_001348082, intron 5 of 16) L1PA16|LINE|L1 -41826 NM_006094 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 287.75-10 chr3 147179735 147180295 + 0.75 NA Intergenic Intergenic 212415 NR_040762 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 208.5-11 chr11 110917317 110917823 + 0.75 NA Intergenic Intergenic 179748 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 153.75-103 chrX 6736463 6736711 + 0.75 NA Intergenic L1PA15|LINE|L1 -201469 NM_016379 51481 Hs.170076 NM_016379 ENSG00000169059 VCX3A VCX-8r|VCX-A|VCX3|VCX8R|VCXA variable charge X-linked 3A protein-coding 224.5-30 chr7 91030113 91030478 + 0.75 NA intron (NM_012395, intron 9 of 13) intron (NM_012395, intron 9 of 13) -234138 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 189.25-3 chr1 163523523 163523809 + 0.75 NA Intergenic Intergenic -100475 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 227.75-10 chr13 63353222 63353690 + 0.75 NA Intergenic MER61-int|LTR|ERV1 -25362 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 168.75-65 chr3 25923803 25924286 + 0.75 NA Intergenic L1M6|LINE|L1 -50349 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 168.75-43 chr2 58018412 58018700 + 0.75 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) -28086 NM_001130482 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 277.75-8 chr20 5883604 5884160 + 0.75 NA Intergenic L1MC5a|LINE|L1 -27628 NM_001819 1114 Hs.516874 NM_001819 ENSG00000089199 CHGB SCG1 chromogranin B protein-coding 167.75-53 chr22 24217521 24218063 + 0.75 NA Intergenic AluSx1|SINE|Alu 27350 NM_004121 2687 Hs.437156 NM_004121 ENSG00000099998 GGT5 GGL|GGT 5|GGT-REL|GGTLA1 gamma-glutamyltransferase 5 protein-coding 196.75-37 chr4 47277052 47277509 + 0.75 NA intron (NM_000812, intron 4 of 8) L1MA1|LINE|L1 186422 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 183.25-47 chr4 31666756 31667094 + 0.75 NA Intergenic MER89|LTR|ERV1 160381 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 149.75-6 chr1 168766871 168767183 + 0.75 NA Intergenic Intergenic -19914 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 152.75-45 chr2 28369791 28370082 + 0.75 NA Intergenic Intergenic -22922 NM_005253 2355 Hs.220971 NM_005253 ENSG00000075426 FOSL2 FRA2 FOS like 2, AP-1 transcription factor subunit protein-coding 152.75-43 chr18 61150108 61150361 + 0.75 NA Intergenic AluJr|SINE|Alu -183196 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 277-14 chrX 100969113 100969670 + 0.75 NA promoter-TSS (NR_103708) promoter-TSS (NR_103708) -317 NR_103709 392509 Hs.147237 NM_001162491 ENSG00000174225 ARL13A ARL13|dJ341D10.2 ADP ribosylation factor like GTPase 13A protein-coding 166-73 chr8 16327927 16328295 + 0.75 NA Intergenic Intergenic -135320 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 248-4 chr13 33784432 33784847 + 0.75 NA Intergenic L1MB2|LINE|L1 -33430 NM_181558 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 189.75-3 chr1 70562318 70562731 + 0.75 NA Intergenic MLT1G|LTR|ERVL-MaLR -143929 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 240-17 chr3 85267663 85268241 + 0.75 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -117758 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 158.75-43 chr2 177445726 177446023 + 0.75 NA intron (NM_003659, intron 8 of 19) L2b|LINE|L2 53101 NM_003659 8540 Hs.516543 NM_003659 ENSG00000018510 AGPS ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY|RCDP3 alkylglycerone phosphate synthase protein-coding 265.5-15 chr4 47165161 47165890 + 0.75 NA intron (NM_000812, intron 4 of 8) intron (NM_000812, intron 4 of 8) 133958 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 153.75-27 chr18 2574301 2574747 + 0.75 NA intron (NM_006101, intron 2 of 16) (TAA)n|Simple_repeat|Simple_repeat 2967 NM_006101 10403 Hs.414407 NM_006101 ENSG00000080986 NDC80 HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80 NDC80 kinetochore complex component protein-coding 182.75-77 chr9 30770618 30771094 + 0.75 NA Intergenic Intergenic -362402 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 337.25-2 chr2 13467865 13468330 + 0.75 NA Intergenic Intergenic -461084 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 194.5 chr1 28620768 28621151 + 0.75 NA intron (NM_005644, intron 2 of 5) intron (NM_005644, intron 2 of 5) 22108 NM_001135218 6883 Hs.530251 NM_005644 ENSG00000120656 TAF12 TAF2J|TAFII20 TATA-box binding protein associated factor 12 protein-coding 168.5-48 chr2 42025782 42026235 + 0.75 NA Intergenic Intergenic -22013 NM_138370 91461 Hs.408542 NM_138370 ENSG00000162878 PKDCC SGK493|Vlk protein kinase domain containing, cytoplasmic protein-coding 260.75-19 chr4 46910849 46911247 + 0.75 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -1803 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 191.25-37 chr2 55480541 55481035 + 0.75 NA Intergenic Intergenic -38807 NM_001282761 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 217.5-36 chr8 135185854 135186305 + 0.75 NA Intergenic Intergenic -48052 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 190.75-20 chr12 76104018 76104485 + 0.75 NA Intergenic Intergenic -19566 NM_001330231 4673 Hs.524599 NM_004537 ENSG00000187109 NAP1L1 NAP1|NAP1L|NRP nucleosome assembly protein 1 like 1 protein-coding 255.5-20 chr3 95201837 95202398 + 0.75 NA Intergenic L1PA8|LINE|L1 263854 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 176.75-25 chr17 41543264 41543576 + 0.75 NA Intergenic AluJr|SINE|Alu 11075 NR_038442 147093 Hs.680576 NR_038442 ENSG00000226629 LINC00974 - long intergenic non-protein coding RNA 974 ncRNA 198.25-25 chr20 19233988 19234430 + 0.75 NA intron (NM_020689, intron 1 of 16) MER5A|DNA|hAT-Charlie 21567 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 187.5-49 chr4 35092025 35092371 + 0.75 NA Intergenic Intergenic -822451 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 185.25-76 chr8 78765559 78765898 + 0.75 NA intron (NM_001199886, intron 2 of 4) L1MC1|LINE|L1 39735 NM_000880 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 231.25-6 chr10 69648445 69648958 + 0.75 NA Intergenic Intergenic 18454 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 268.75-12 chr6 116190134 116190663 + 0.75 NA intron (NM_152729, intron 6 of 11) intron (NM_152729, intron 6 of 11) 63677 NM_021648 23270 Hs.284141 NM_021648 ENSG00000187189 TSPYL4 dJ486I3.2 TSPY like 4 protein-coding 410.75-3 chr6 66287645 66288802 + 0.75 NA Intergenic L1MCa|LINE|L1 500344 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 168.75-101 chr8 104387993 104388412 + 0.75 NA intron (NM_001385, intron 8 of 9) intron (NM_001385, intron 8 of 9) 48376 NM_030788 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 232.75-19 chr21 23229366 23229836 + 0.75 NA Intergenic Intergenic 150317 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 247.5-4 chr1 176300570 176300951 + 0.75 NA Intergenic L2a|LINE|L2 -93474 NM_022457 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 241-12 chr16 69020082 69020596 + 0.75 NA intron (NM_024562, intron 15 of 17) L2c|LINE|L2 -85314 NM_001199280 3038 Hs.592069 NM_005329 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 366.25-9 chr5 16479036 16479933 + 0.75 NA intron (NM_019000, intron 3 of 6) MIRb|SINE|MIR -13684 NM_033414 90441 Hs.60300 NM_033414 ENSG00000173545 ZNF622 ZPR9 zinc finger protein 622 protein-coding 247-26 chr9 31180553 31180931 + 0.75 NA Intergenic L1PA5|LINE|L1 200748 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 235.75-19 chr2 230531978 230532411 + 0.75 NA intron (NM_001080391, intron 24 of 28) LOR1-int|LTR|ERV1 115438 NM_001206704 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 321.75-3 chr3 143496528 143497330 + 0.75 NA intron (NM_173653, intron 9 of 15) MLT1A0|LTR|ERVL-MaLR 154683 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 226.25-38 chrX 110355646 110355989 + 0.75 NA intron (NM_001171689, intron 2 of 7) L1MA7|LINE|L1 -37732 NM_015365 9949 Hs.656243 NM_015365 ENSG00000101935 AMMECR1 AMMERC1|MFHIEN Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 protein-coding 187-31 chr3 66970571 66970881 + 0.75 NA Intergenic Intergenic -27581 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 178.75-55 chr5 66534450 66534761 + 0.75 NA Intergenic Intergenic -23001 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 155-86 chr6 51557667 51557951 + 0.75 NA Intergenic Intergenic -64061 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 206.5-29 chr4 17803987 17804400 + 0.75 NA 5' UTR (NM_017741, exon 3 of 3) 5' UTR (NM_017741, exon 3 of 3) 6564 NR_144305 54876 Hs.614787 NM_017741 ENSG00000163257 DCAF16 C4orf30 DDB1 and CUL4 associated factor 16 protein-coding 184.25-65 chr9 84316329 84316663 + 0.75 NA intron (NM_022127, intron 2 of 18) MLT1J|LTR|ERVL-MaLR 24262 NR_037638 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 162.25-95 chr8 58720539 58720882 + 0.75 NA Intergenic L1ME3B|LINE|L1 -60857 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 186.25-44 chr4 113889889 113890299 + 0.75 NA Intergenic THE1C|LTR|ERVL-MaLR 89553 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 245.75-6 chr14 42612622 42613276 + 0.75 NA Intergenic MER101-int|LTR|ERV1 1006093 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 180.25-46 chr3 116823911 116824358 + 0.75 NA Intergenic MIR|SINE|MIR 26233 NR_039649 100616485 NR_039649 ENSG00000265433 MIR4447 - microRNA 4447 ncRNA 182-60 chr8 129464079 129464396 + 0.75 NA intron (NR_130920, intron 1 of 3) LTR50|LTR|ERVL 19905 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 206.75-2 chr1 54305792 54306169 + 0.75 NA intron (NM_001009955, intron 4 of 16) intron (NM_001009955, intron 4 of 16) 69537 NR_103541 619518 Hs.591438 NM_001034847 ENSG00000198711 SSBP3-AS1 C1orf191|MST128|MSTP128 SSBP3 antisense RNA 1 ncRNA 167.25-82 chr8 98639795 98640074 + 0.75 NA intron (NM_001256313, intron 4 of 8) AluSx|SINE|Alu 185737 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 199.25-69 chr8 110916543 110917180 + 0.75 NA Intergenic Intergenic 110572 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 244.75-3 chr10 90412246 90412832 + 0.75 NA intron (NR_110657, intron 3 of 6) MER61-int|LTR|ERV1 128266 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 208.75-9 chr14 61004060 61004419 + 0.75 NA intron (NR_033344, intron 3 of 16) intron (NR_033344, intron 3 of 16) -22549 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 217-2 chr1 113799822 113800290 + 0.75 NA intron (NR_130896, intron 1 of 7) intron (NR_130896, intron 1 of 7) 12420 NM_018364 54665 Hs.486285 NM_018364 ENSG00000081019 RSBN1 KDM9|ROSBIN round spermatid basic protein 1 protein-coding 173.75-32 chr19 56054862 56055176 + 0.75 NA intron (NM_153447, intron 13 of 14) AluSx1|SINE|Alu -11665 NR_110741 101928886 Hs.434652 NR_110741 ENSG00000267522 LINC01864 - long intergenic non-protein coding RNA 1864 ncRNA 197.25-38 chr4 149524716 149525048 + 0.75 NA intron (NM_001363507, intron 12 of 13) L1M5|LINE|L1 290961 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 263.75-21 chr8 137211510 137212097 + 0.75 NA Intergenic MIRb|SINE|MIR 201785 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 151.5-58 chr20 51053982 51054453 + 0.75 NA Intergenic MIR|SINE|MIR -31110 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 213.75-8 chr14 64326321 64326899 + 0.75 NA intron (NM_001291712, intron 2 of 13) intron (NM_001291712, intron 2 of 13) 11940 NM_001291723 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 160.5-20 chr11 69967591 69967940 + 0.75 NA Intergenic MIR|SINE|MIR 96159 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LINC02753 - long intergenic non-protein coding RNA 2753 ncRNA 161.5-37 chr15 56189122 56189359 + 0.75 NA intron (NM_001370561, intron 4 of 11) AluJr4|SINE|Alu 692 NM_001368074 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 221.75-14 chr14 60295438 60295804 + 0.75 NA 3' UTR (NM_177952, exon 6 of 6) 3' UTR (NM_177952, exon 6 of 6) -27575 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 174-34 chr2 225706203 225706618 + 0.75 NA Intergenic Intergenic 305524 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 174.25-13 chr11 18826740 18827170 + 0.75 NA Intergenic L1PB1|LINE|L1 -34234 NM_001278236 84867 Hs.79092 NM_006906 ENSG00000110786 PTPN5 PTPSTEP|STEP|STEP61 protein tyrosine phosphatase non-receptor type 5 protein-coding 190-69 chr8 79133445 79133765 + 0.75 NA Intergenic Intergenic -198583 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 190.75-15 chr11 88700608 88700988 + 0.75 NA intron (NM_001143831, intron 2 of 8) ERV3-16A3_I-int|LTR|ERVL 196222 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 179.75-64 chr8 10272409 10272816 + 0.75 NA intron (NM_001199729, intron 4 of 6) MLT2B4|LTR|ERVL 176961 NM_001199729 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 167.25-35 chr2 41041529 41041944 + 0.75 NA Intergenic Intergenic -529301 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 164.75-50 chr22 25965596 25965928 + 0.75 NA intron (NM_001318245, intron 39 of 43) MER63B|DNA|hAT-Blackjack -203700 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 225.5-10 chr11 125117944 125118299 + 0.75 NA Intergenic Intergenic -6358 NR_047587 219854 Hs.7626 NM_001080546 ENSG00000150433 TMEM218 - transmembrane protein 218 protein-coding 190.75-30 chr2 20438498 20439047 + 0.75 NA Intergenic Intergenic -8302 NM_004040 388 Hs.502876 NM_004040 ENSG00000143878 RHOB ARH6|ARHB|MST081|MSTP081|RHOH6 ras homolog family member B protein-coding 174.75-27 chr17 55881311 55881682 + 0.75 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 130391 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 187.5-65 chr7 80295817 80296281 + 0.75 NA Intergenic L1MA10|LINE|L1 78390 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 272.25-6 chr12 80648055 80648521 + 0.75 NA intron (NM_001145026, intron 35 of 44) intron (NM_001145026, intron 35 of 44) -59346 NM_002469 4618 Hs.35937 NM_002469 ENSG00000111046 MYF6 CNM3|MRF4|bHLHc4|myf-6 myogenic factor 6 protein-coding 258.75-2 chr10 27515679 27516254 + 0.75 NA intron (NR_046172, intron 2 of 5) intron (NR_046172, intron 2 of 5) 11662 NM_001256411 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 177.5-26 chr17 31621349 31621708 + 0.75 NA Intergenic L1M4|LINE|L1 46117 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 172.25-33 chr2 183929906 183930237 + 0.75 NA Intergenic Intergenic -448904 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 307.25-3 chr2 25483513 25484015 + 0.75 NA intron (NM_033147, intron 9 of 19) intron (NM_033147, intron 9 of 19) -141174 NM_175629 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 158.5-15 chr12 38610913 38611193 + 0.75 NA Intergenic Intergenic 294279 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 264.75 chr1 168921396 168921971 + 0.75 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 134742 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 192-41 chr3 134563588 134564095 + 0.75 NA non-coding (NR_148352, exon 13 of 13) non-coding (NR_148352, exon 13 of 13) 77668 NM_001353124 80254 Hs.443301 NM_025180 ENSG00000182923 CEP63 SCKL6 centrosomal protein 63 protein-coding 224-17 chr2 231462572 231463077 + 0.75 NA intron (NM_005381, intron 2 of 13) intron (NM_005381, intron 2 of 13) 1660 NM_005381 4691 Hs.79110 NM_005381 ENSG00000115053 NCL C23|Nsr1 nucleolin protein-coding 325.5-4 chr2 48407818 48408311 + 0.75 NA Intergenic Intergenic -32702 NR_024188 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 185.5-30 chr14 84192356 84192625 + 0.75 NA Intergenic L1ME3F|LINE|L1 -1079442 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 255.5-36 chr7 11666647 11667213 + 0.75 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 165268 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 189.25-14 chr13 78359093 78359459 + 0.75 NA intron (NR_047001, intron 3 of 5) AluJb|SINE|Alu -236846 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 155-97 chr7 77911197 77911531 + 0.75 NA intron (NM_001366085, intron 7 of 10) intron (NM_001366085, intron 7 of 10) 71234 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 160.75-30 chr13 57124228 57124486 + 0.75 NA Intergenic Intergenic -16561 NM_001130407 729250 Hs.525056 NM_001130407 ENSG00000234278 PRR20E PRR20|PRR20A|PRR20B|PRR20C|PRR20D proline rich 20E protein-coding 169.25-26 chr2 148253593 148253853 + 0.75 NA intron (NM_018328, intron 4 of 14) LTR18A|LTR|ERVL -232119 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 154.25-27 chr12 81092560 81093034 + 0.75 NA intron (NM_024560, intron 1 of 15) intron (NM_024560, intron 1 of 15) 14718 NM_001330243 79611 Hs.259559 NM_024560 ENSG00000111058 ACSS3 - acyl-CoA synthetase short chain family member 3 protein-coding 231.5-22 chr3 178553045 178553443 + 0.75 NA intron (NR_126560, intron 5 of 7) intron (NR_126560, intron 5 of 7) -5606 NM_005832 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 159-81 chr7 53806762 53807126 + 0.75 NA intron (NR_038371, intron 1 of 5) L1M4b|LINE|L1 4987 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 290.25-8 chr13 84035663 84036268 + 0.75 NA Intergenic Intergenic -104637 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 157.25-111 chr9 90553355 90553580 + 0.75 NA intron (NR_034157, intron 1 of 5) intron (NR_034157, intron 1 of 5) 29279 NR_034157 340515 Hs.522284 NM_001105317 LINC01501 - long intergenic non-protein coding RNA 1501 ncRNA 190.5-11 chr11 18149367 18149724 + 0.75 NA Intergenic MER2|DNA|TcMar-Tigger 16974 NM_001370464 117195 Hs.380177 NM_054031 ENSG00000179826 MRGPRX3 GPCR|MRGX3|SNSR1|SNSR2 MAS related GPR family member X3 protein-coding 178.25-68 chr8 15513121 15513611 + 0.75 NA Intergenic Intergenic -26721 NM_178234 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 192.75-69 chr9 91017231 91017791 + 0.75 NA Intergenic L1PB1|LINE|L1 57621 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 150-27 chr14 65182798 65183116 + 0.75 NA Intergenic MER34C2|LTR|ERV1 39390 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 261-4 chr1 245791905 245792498 + 0.75 NA intron (NM_022743, intron 10 of 11) MIRb|SINE|MIR -557684 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 181.25-28 chr2 154244539 154244929 + 0.75 NA intron (NM_052917, intron 6 of 12) intron (NM_052917, intron 6 of 12) 212704 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 160.5-88 chr5 58131055 58131346 + 0.75 NA Intergenic Intergenic -8859 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 148.75-77 chr5 85681280 85681634 + 0.75 NA Intergenic L1ME2|LINE|L1 -600987 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 192.25-11 chr11 14215234 14215540 + 0.75 NA intron (NM_006108, intron 6 of 15) MLT1H1|LTR|ERVL-MaLR 143098 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 146.75-50 chr2 48746145 48746583 + 0.75 NA intron (NM_000233, intron 1 of 10) intron (NM_000233, intron 1 of 10) 9360 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 279.5-8 chr4 31356363 31356960 + 0.75 NA Intergenic MER41B|LTR|ERV1 -149883 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 155.25-52 chr20 40377227 40377535 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 311855 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 227.5-28 chr7 19472747 19473118 + 0.75 NA Intergenic L1MC|LINE|L1 232504 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 228-6 chr11 13522759 13523321 + 0.75 NA Intergenic Intergenic -26865 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 177-2 chr1 83734841 83735288 + 0.75 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 125482 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 153.5-70 chr4 42049992 42050457 + 0.75 NA intron (NM_006345, intron 9 of 17) intron (NM_006345, intron 9 of 17) 59694 NM_006345 10463 Hs.479634 NM_006345 ENSG00000014824 SLC30A9 BILAPES|C4orf1|GAC63|HUEL|ZNT9 solute carrier family 30 member 9 protein-coding 253.25-9 chr19 30958257 30958662 + 0.75 NA Intergenic Intergenic -209051 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 169-36 chr2 68435744 68436097 + 0.75 NA Intergenic Charlie8|DNA|hAT-Charlie 31374 NR_133923 554251 Hs.164117 NM_001024680 ENSG00000204923 FBXO48 - F-box protein 48 protein-coding 231.5-7 chr15 54989512 54990022 + 0.75 NA Intergenic Intergenic -66980 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 168.5-67 chr3 107270406 107270749 + 0.75 NA intron (NR_028302, intron 1 of 3) MLT1F2|LTR|ERVL-MaLR 29885 NR_028301 344595 Hs.543039 NR_028301 ENSG00000243701 DUBR DUM|LINC00883|LINC0883 DPPA2 upstream binding RNA ncRNA 199-38 chr8 88373190 88373533 + 0.75 NA Intergenic HAL1|LINE|L1 -45878 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 289.75-6 chr14 79086725 79087506 + 0.75 NA intron (NR_073547, intron 14 of 20) LTR32|LTR|ERVL -112867 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 159.5-58 chr3 192273991 192274347 + 0.75 NA intron (NR_046596, intron 3 of 4) intron (NR_046596, intron 3 of 4) 35539 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 232-20 chr4 126408544 126408947 + 0.75 NA Intergenic L1PA15-16|LINE|L1 901486 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 189.5-26 chr19 48533573 48534053 + 0.75 NA Intergenic Intergenic -18359 NM_177973 6820 Hs.369331 NM_004605 ENSG00000088002 SULT2B1 ARCI14|HSST2 sulfotransferase family 2B member 1 protein-coding 182-10 chr10 94429265 94429679 + 0.75 NA intron (NM_015188, intron 1 of 12) intron (NM_015188, intron 1 of 12) 26931 NM_015188 23232 Hs.500598 NM_015188 ENSG00000108239 TBC1D12 - TBC1 domain family member 12 protein-coding 146.5-109 chr8 143834496 143834890 + 0.75 NA 3' UTR (NM_178564, exon 18 of 18) 3' UTR (NM_178564, exon 18 of 18) 3123 NR_106904 102466748 NR_106904 ENSG00000284142 MIR6845 hsa-mir-6845 microRNA 6845 ncRNA 209-2 chr1 79091218 79091654 + 0.75 NA Intergenic Intergenic -84706 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 147.75-85 chr5 27269322 27269593 + 0.75 NA Intergenic Intergenic -202835 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 202.25-48 chr6 123225934 123226246 + 0.75 NA intron (NM_006073, intron 38 of 40) intron (NM_006073, intron 38 of 40) -213514 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 260.25-8 chr15 72135361 72135829 + 0.75 NA intron (NM_145204, intron 1 of 1) intron (NM_145204, intron 1 of 1) 17192 NM_001172111 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 153-99 chrX 87054362 87054705 + 0.75 NA Intergenic L1MB8|LINE|L1 -463269 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 349.5-3 chr7 55452050 55452831 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger 74440 NM_001321251 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 237.75-24 chr7 41710236 41710857 + 0.75 NA intron (NR_027118, intron 1 of 3) intron (NR_027118, intron 1 of 3) -7456 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 211.75-13 chr17 71525211 71525710 + 0.75 NA Intergenic L1M4a1|LINE|L1 -323281 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 231.5-16 chr2 185637232 185637713 + 0.75 NA Intergenic Intergenic 101247 NR_110216 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 184.25-23 chr15 95683899 95684348 + 0.75 NA Intergenic Intergenic 251030 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 166.75-39 chr2 38634659 38634995 + 0.75 NA Intergenic Intergenic -31287 NM_138801 130589 Hs.435012 NM_138801 ENSG00000143891 GALM BLOCK25|GLAT|HEL-S-63p|IBD1 galactose mutarotase protein-coding 149.25-75 chr4 58985045 58985269 + 0.75 NA intron (NR_133941, intron 1 of 2) intron (NR_133941, intron 1 of 2) 875 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 205-32 chr3 121550575 121551078 + 0.75 NA Intergenic MER5B|DNA|hAT-Charlie -4838 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 169-2 chr1 45651876 45652291 + 0.75 NA intron (NM_021639, intron 6 of 12) MER20|DNA|hAT-Charlie -5398 NR_026768 728963 Hs.675157 NR_026768 RPS15AP10 RPS15A_4_42 ribosomal protein S15a pseudogene 10 pseudo 200-15 chr12 18793923 18794237 + 0.75 NA Intergenic Intergenic 55961 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 220.25-41 chr7 53859361 53859863 + 0.75 NA Intergenic L1MEd|LINE|L1 -47681 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 229.5-13 chr16 52065839 52066364 + 0.75 NA intron (NM_001242473, intron 1 of 5) L1MC2|LINE|L1 7834 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 174.75-4 chr1 98912265 98912676 + 0.75 NA intron (NM_001010861, intron 5 of 5) MLT1J|LTR|ERVL-MaLR -91806 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 197.75-36 chr2 75762369 75762759 + 0.75 NA Intergenic Intergenic -51649 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 147-84 chr5 5187282 5187591 + 0.75 NA intron (NM_139056, intron 5 of 22) intron (NM_139056, intron 5 of 22) 47106 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 254.25-14 chr5 166631666 166632373 + 0.75 NA Intergenic Intergenic 294351 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 174.75-8 chr1 246368595 246368964 + 0.75 NA intron (NM_001167740, intron 1 of 11) MLT2A2|LTR|ERVL 48633 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 277 chr10 49176766 49177199 + 0.75 NA intron (NM_001288742, intron 1 of 4) intron (NM_001288742, intron 1 of 4) 11409 NM_001288742 170371 Hs.385493 NM_001010863 ENSG00000204161 TMEM273 C10orf128 transmembrane protein 273 protein-coding 261.25-11 chr5 28231625 28232053 + 0.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 55826 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 233.75-15 chr21 14646662 14647019 + 0.75 NA Intergenic L1MA4|LINE|L1 -3733 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 212.25-26 chr2 197868860 197869458 + 0.75 NA intron (NM_006226, intron 1 of 5) MIRb|SINE|MIR 64566 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 165.25-38 chr3 82210282 82210722 + 0.75 NA intron (NR_147146, intron 3 of 8) intron (NR_147146, intron 3 of 8) 224360 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 190-28 chr2 133707858 133708211 + 0.75 NA Intergenic MIR|SINE|MIR -139571 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 150.75-27 chr17 67304997 67305221 + 0.75 NA Intergenic LTR2C|LTR|ERV1 -59913 NM_014877 9931 Hs.370140 NM_014877 ENSG00000198265 HELZ DHRC|DRHC|HUMORF5 helicase with zinc finger protein-coding 215-12 chr2 127233009 127233433 + 0.75 NA Intergenic L1M4|LINE|L1 -12922 NM_001367501 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 204.75-20 chr17 60623800 60624441 + 0.75 NA intron (NM_003620, intron 2 of 5) intron (NM_003620, intron 2 of 5) 23937 NM_003620 8493 Hs.286073 NM_003620 ENSG00000170836 PPM1D IDDGIP|PP2C-DELTA|WIP1 protein phosphatase, Mg2+/Mn2+ dependent 1D protein-coding 191.75-3 chr1 158494609 158495067 + 0.75 NA Intergenic Charlie10|DNA|hAT-Charlie 14960 NM_001004472 343406 Hs.451913 NM_001004472 ENSG00000198965 OR10R2 OR1-8|OR10R2Q olfactory receptor family 10 subfamily R member 2 protein-coding 187.25-4 chr1 119670854 119671361 + 0.75 NA Intergenic MER54A|LTR|ERVL -22841 NM_001080470 90874 Hs.381105 NM_001080470 ENSG00000143067 ZNF697 - zinc finger protein 697 protein-coding 230.25-4 chr1 109535119 109535777 + 0.75 NA Intergenic Intergenic -4424 NM_031936 83873 Hs.709782 NM_031936 ENSG00000156097 GPR61 BALGR|GPCR3 G protein-coupled receptor 61 protein-coding 177.5-16 chr14 48957198 48957688 + 0.75 NA Intergenic MLT-int|LTR|ERVL-MaLR 628937 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 151.25-59 chr3 85341146 85341361 + 0.75 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -44457 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 233-5 chr11 31017947 31018412 + 0.75 NA intron (NM_001367979, intron 20 of 38) Charlie7|DNA|hAT-Charlie -25493 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 156-44 chr2 214338983 214339342 + 0.75 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -71892 NR_159945 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 233.75-25 chr5 42152389 42152898 + 0.75 NA Intergenic Intergenic 22702 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 175.75-18 chr15 52578673 52579001 + 0.75 NA Intergenic MIRb|SINE|MIR -9391 NM_001306191 10776 Hs.512908 NM_006628 ENSG00000128989 ARPP19 ARPP-16|ARPP-19|ARPP16|ENSAL cAMP regulated phosphoprotein 19 protein-coding 353.5-5 chr2 117866038 117866723 + 0.75 NA Intergenic AluSc|SINE|Alu 32649 NR_158150 107985939 NR_158150 LOC107985939 - uncharacterized LOC107985939 ncRNA 157-88 chr7 78056057 78056396 + 0.75 NA intron (NM_001301128, intron 20 of 20) L1MB2|LINE|L1 216096 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 176.75-16 chr12 7654688 7654958 + 0.75 NA intron (NM_001304566, intron 2 of 5) intron (NM_001304566, intron 2 of 5) 11085 NM_001644 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 198.5-4 chr1 105487722 105488155 + 0.75 NA Intergenic LTR49-int|LTR|ERV1 130997 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 233.75-32 chr7 53450930 53451583 + 0.75 NA Intergenic Intergenic 360675 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 148-18 chr11 11511408 11511861 + 0.75 NA intron (NM_001363464, intron 1 of 9) MLT1A0|LTR|ERVL-MaLR 110371 NM_198516 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 170.5-39 chr2 172634103 172634433 + 0.75 NA Intergenic (TAT)n|Simple_repeat|Simple_repeat 78178 NM_001278549 5163 Hs.470633 NM_002610 ENSG00000152256 PDK1 - pyruvate dehydrogenase kinase 1 protein-coding 281.5-13 chr15 61917603 61918316 + 0.75 NA intron (NM_001018088, intron 59 of 81) intron (NM_001018088, intron 59 of 81) 142488 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 285.5-8 chr2 179477953 179478471 + 0.75 NA intron (NM_001352810, intron 6 of 10) intron (NM_001352810, intron 6 of 10) 84376 NM_001113398 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 222.75-34 chr6 130627415 130627910 + 0.75 NA Intergenic L1ME4a|LINE|L1 190545 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 184.75-10 chr10 21928084 21928410 + 0.75 NA intron (NM_022365, intron 3 of 11) intron (NM_022365, intron 3 of 11) 75483 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 234.5-21 chr5 14028091 14028565 + 0.75 NA Intergenic L1MB8|LINE|L1 -83848 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 234.5-11 chr18 64672990 64673527 + 0.75 NA Intergenic L1MA7|LINE|L1 -413203 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 229.75-31 chr6 51433797 51434380 + 0.75 NA Intergenic Intergenic -187782 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 178.5-8 chr10 83372504 83372963 + 0.75 NA Intergenic Intergenic 304356 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 191.5-26 chr17 57136962 57137290 + 0.75 NA Intergenic Intergenic 41637 NM_001370427 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 231-24 chr6 53503622 53504018 + 0.75 NA intron (NM_001498, intron 12 of 15) L1MEj|LINE|L1 41281 NM_001197115 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 254.75-11 chr18 7486276 7486814 + 0.75 NA Intergenic Charlie29a|DNA|hAT-Charlie -25539 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 236.25-13 chr16 86261454 86261893 + 0.75 NA intron (NR_104139, intron 3 of 5) intron (NR_104139, intron 3 of 5) 24574 NR_104139 101154687 Hs.640512 NR_104139 LINC01081 TCONS00024764|TCONS_00024764 long intergenic non-protein coding RNA 1081 ncRNA 183.5-15 chr12 114352081 114352526 + 0.75 NA Intergenic Intergenic 53841 NM_181486 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 195.5 chr1 48560080 48560398 + 0.75 NA intron (NM_001323575, intron 11 of 12) intron (NM_001323575, intron 11 of 12) -88031 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 194-48 chr6 50100994 50101436 + 0.75 NA Intergenic Intergenic -51286 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 149-87 chr5 166911291 166911550 + 0.75 NA intron (NR_108020, intron 1 of 2) intron (NR_108020, intron 1 of 2) 14950 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 265.25-17 chr7 52576583 52577141 + 0.75 NA Intergenic Intergenic -458771 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 252-6 chr3 79756870 79757333 + 0.75 NA intron (NM_002941, intron 1 of 30) L1MB4|LINE|L1 10897 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 160-36 chr19 36943182 36943470 + 0.75 NA intron (NM_001204839, intron 5 of 8) L1MC5a|LINE|L1 26994 NM_001204837 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 229.5-41 chr7 54156193 54156511 + 0.75 NA Intergenic LTR78|LTR|ERV1 -174345 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 164.25-2 chr1 70178088 70178492 + 0.75 NA intron (NM_017768, intron 6 of 14) intron (NM_017768, intron 6 of 14) 27289 NM_017768 55631 Hs.147836 NM_017768 ENSG00000066557 LRRC40 dJ677H15.1 leucine rich repeat containing 40 protein-coding 150.25-23 chr11 105140168 105140434 + 0.75 NA promoter-TSS (NM_021571) promoter-TSS (NM_021571) -532 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 365.5-6 chr8 82072951 82073828 + 0.75 NA Intergenic Intergenic -231103 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 163.75-4 chr1 110804012 110804248 + 0.75 NA Intergenic L1PA15|LINE|L1 -67069 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 285.75-11 chr8 135303498 135303958 + 0.75 NA Intergenic L2b|LINE|L2 69597 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 190.25-10 chr13 55487497 55487908 + 0.75 NA Intergenic L1MA8|LINE|L1 313248 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 165-84 chr8 25899415 25899714 + 0.75 NA intron (NM_022659, intron 7 of 15) intron (NM_022659, intron 7 of 15) 145849 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 157.5-59 chr3 4499825 4500054 + 0.75 NA intron (NM_001168272, intron 2 of 60) intron (NM_001168272, intron 2 of 60) 6591 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 159.5-74 chr5 35831332 35831687 + 0.75 NA Intergenic Intergenic -25382 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 181.5-53 chr5 7249386 7249867 + 0.75 NA Intergenic L2a|LINE|L2 19728 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 154-64 chr3 24725848 24726265 + 0.75 NA Intergenic Intergenic -103267 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 160.75-2 chr1 26452656 26452983 + 0.75 NA intron (NM_205861, intron 6 of 8) intron (NM_205861, intron 6 of 8) 14718 NR_125953 101928324 Hs.663256 NR_125952 LOC101928324 - uncharacterized LOC101928324 ncRNA 154.25-33 chr15 47390745 47391020 + 0.75 NA intron (NM_001198999, intron 1 of 19) intron (NM_001198999, intron 1 of 19) 206793 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 180.25 chr1 29614310 29614719 + 0.75 NA Intergenic L1MC3|LINE|L1 -264400 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 296.75-5 chr7 33572112 33572806 + 0.75 NA intron (NR_145411, intron 22 of 23) L1MA4|LINE|L1 -332456 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 157.5-113 chr9 25843007 25843251 + 0.75 NA Intergenic LTR80A|LTR|ERVL 63073 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 220-26 chr5 28221308 28221709 + 0.75 NA Intergenic Intergenic 66157 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 160.75-25 chr12 60022927 60023338 + 0.75 NA Intergenic L1MB5|LINE|L1 333762 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 176.25-11 chr10 96568511 96568838 + 0.75 NA intron (NM_020123, intron 2 of 14) L3|LINE|CR1 18338 NM_020123 56889 Hs.500674 NM_020123 ENSG00000077147 TM9SF3 EP70-P-iso|SMBP transmembrane 9 superfamily member 3 protein-coding 165.25-54 chr5 100149464 100149857 + 0.75 NA Intergenic L2a|LINE|L2 238594 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 169.75-20 chr11 83232786 83233153 + 0.75 NA intron (NM_001300975, intron 7 of 10) L1MA2|LINE|L1 39257 NR_125355 338699 Hs.503438 NM_182603 ENSG00000137494 ANKRD42 PPP1R79|SARP ankyrin repeat domain 42 protein-coding 207-31 chr4 56705503 56705982 + 0.75 NA Intergenic MLT2C1|LTR|ERVL -24036 NM_001145460 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 165.25-64 chr7 121778779 121779180 + 0.75 NA Intergenic Intergenic -94182 NM_001369396 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 162.5-65 chr4 133634284 133634685 + 0.75 NA Intergenic Intergenic 485190 NM_020815 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 263.5-7 chr12 20964308 20964697 + 0.75 NA intron (NM_001371097, intron 13 of 15) MER4-int|LTR|ERV1 -51194 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 185.75-53 chr3 143293037 143293557 + 0.75 NA intron (NM_173653, intron 14 of 15) intron (NM_173653, intron 14 of 15) -48949 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 198.5-44 chr5 112335021 112335573 + 0.75 NA intron (NM_001347887, intron 1 of 23) intron (NM_001347887, intron 1 of 23) 83980 NM_022140 64097 Hs.584954 NM_022140 ENSG00000129595 EPB41L4A EPB41L4|NBL4 erythrocyte membrane protein band 4.1 like 4A protein-coding 149.5-54 chr21 14812426 14812656 + 0.75 NA Intergenic MER44B|DNA|TcMar-Tigger 106127 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 222-29 chr8 116007586 116008020 + 0.75 NA intron (NR_046215, intron 7 of 13) L1MC1|LINE|L1 317256 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 287.75-8 chr3 21513193 21513855 + 0.75 NA intron (NM_024697, intron 3 of 7) intron (NM_024697, intron 3 of 7) -29265 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 154.75-75 chr4 94821436 94821842 + 0.75 NA intron (NM_001203, intron 1 of 12) L2a|LINE|L2 63684 NM_001203 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 270.75-23 chr6 50009119 50009570 + 0.75 NA intron (NM_001037728, intron 1 of 1) intron (NM_001037728, intron 1 of 1) 12637 NM_001037728 245913 Hs.571093 NM_001037497 ENSG00000203970 DEFB110 DEFB-10|DEFB-11|DEFB111 defensin beta 110 protein-coding 208.25-36 chr8 117167414 117168057 + 0.75 NA intron (NM_173851, intron 6 of 7) L1ME3G|LINE|L1 32740 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 201.75-13 chr15 76256323 76256691 + 0.75 NA intron (NM_000126, intron 9 of 11) Charlie1|DNA|hAT-Charlie 3645 NR_028510 7302 Hs.684881 NR_002721 TYRO3P - TYRO3P protein tyrosine kinase pseudogene pseudo 159.25-80 chr8 130127400 130127790 + 0.75 NA intron (NM_001362925, intron 17 of 29) intron (NM_001362925, intron 17 of 29) -42827 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 200.25-16 chr14 42540473 42540861 + 0.75 NA Intergenic Intergenic 933811 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 176.75-28 chr18 68845108 68845402 + 0.75 NA intron (NM_001093729, intron 5 of 9) intron (NM_001093729, intron 5 of 9) 47175 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 191-39 chr4 164235169 164235653 + 0.75 NA intron (NM_001166373, intron 1 of 7) intron (NM_001166373, intron 1 of 7) -37700 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 155-47 chr2 226928089 226928487 + 0.75 NA intron (NM_001349069, intron 8 of 8) L1PB3|LINE|L1 92234 NM_001349072 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 147.75-22 chr11 46011608 46011848 + 0.75 NA intron (NR_147890, intron 5 of 18) intron (NR_147890, intron 5 of 18) 89072 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding 154-60 chr2 209211490 209211747 + 0.75 NA Intergenic Intergenic -212429 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 260-11 chr7 49729468 49729958 + 0.75 NA Intergenic Intergenic -43925 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 148.75-113 chrX 95781339 95781659 + 0.75 NA Intergenic MER44B|DNA|TcMar-Tigger 556403 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 190.75-49 chr4 92601275 92601672 + 0.75 NA intron (NM_001286838, intron 2 of 14) L1PA10|LINE|L1 297074 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 185-35 chr2 31873513 31874047 + 0.75 NA intron (NR_126032, intron 5 of 6) intron (NR_126032, intron 5 of 6) -69800 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 184.75-21 chr12 101433087 101433492 + 0.75 NA Intergenic Intergenic -25469 NM_001301068 400 Hs.372616 NM_001177 ENSG00000120805 ARL1 ARFL1 ADP ribosylation factor like GTPase 1 protein-coding 366-2 chr2 68964792 68965674 + 0.75 NA Intergenic AluSp|SINE|Alu -9340 NM_019617 56287 Hs.69319 NM_019617 ENSG00000169605 GKN1 AMP18|BRICD1|CA11|FOV|foveolin gastrokine 1 protein-coding 149-75 chr4 74962007 74962404 + 0.75 NA intron (NR_121617, intron 3 of 3) L1M4c|LINE|L1 8157 NR_121617 100507388 Hs.570765 NR_121617 ENSG00000249717 LOC100507388 - uncharacterized LOC100507388 ncRNA 168.5-19 chr12 87378692 87379188 + 0.75 NA Intergenic L1MB7|LINE|L1 48201 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 203.75-43 chr7 22267048 22267392 + 0.75 NA intron (NM_012294, intron 6 of 25) intron (NM_012294, intron 6 of 25) -72410 NM_001367602 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 154-16 chr11 7413628 7414011 + 0.75 NA intron (NM_175733, intron 3 of 6) FLAM_A|SINE|Alu 52016 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 214.5-30 chr3 88884269 88884683 + 0.75 NA Intergenic Intergenic -223145 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 265.75-17 chr7 113809517 113809975 + 0.75 NA Intergenic MER58B|DNA|hAT-Charlie 109263 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 164.5-15 chr13 59510701 59511079 + 0.75 NA Intergenic Intergenic -501828 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 177.25-47 chr3 162830758 162831066 + 0.75 NA Intergenic L1M1|LINE|L1 472389 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 279.5-11 chr5 120240094 120240523 + 0.75 NA Intergenic Intergenic -223970 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 184.75-36 chr18 1732719 1733005 + 0.75 NA Intergenic Intergenic -373233 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 235-15 chr3 169073094 169073501 + 0.75 NA Intergenic MER47B|DNA|TcMar-Tigger 72226 NM_001366472 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 214.25-2 chr1 73338119 73338633 + 0.75 NA non-coding (NR_110676, exon 4 of 4) non-coding (NR_110676, exon 4 of 4) 32206 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 208-5 chr10 86742393 86742931 + 0.75 NA Intergenic Intergenic -13977 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 399-4 chr5 37957742 37958808 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR 9784 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 237.5 chr10 59007518 59007945 + 0.75 NA Intergenic MLT1K|LTR|ERVL-MaLR 8213 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 216.75-11 chr17 70222886 70223416 + 0.75 NA Intergenic Intergenic 53616 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 287.75-4 chr12 109944322 109944932 + 0.75 NA intron (NM_057170, intron 14 of 17) intron (NM_057170, intron 14 of 17) 44050 NM_032300 84260 Hs.410924 NM_032300 ENSG00000139437 TCHP TpMs trichoplein keratin filament binding protein-coding 159-20 chr14 45938626 45938959 + 0.75 NA Intergenic Intergenic -125367 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 313.75-6 chr15 25478154 25478837 + 0.75 NA Intergenic Intergenic -39439 NM_130839 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 162.5-60 chr3 167758078 167758455 + 0.75 NA intron (NM_005025, intron 1 of 8) intron (NM_005025, intron 1 of 8) 22543 NM_005025 5274 Hs.478153 NM_005025 ENSG00000163536 SERPINI1 PI12|neuroserpin serpin family I member 1 protein-coding 273-3 chr1 226772618 226773111 + 0.75 NA Intergenic MIR3|SINE|MIR -33689 NM_002221 3707 Hs.528087 NM_002221 ENSG00000143772 ITPKB IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 inositol-trisphosphate 3-kinase B protein-coding 257.25-6 chr10 66718338 66718832 + 0.75 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -207451 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 247.25-26 chr9 80567052 80567687 + 0.75 NA Intergenic L1MB7|LINE|L1 592346 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 302.5-12 chr8 33758261 33759008 + 0.75 NA Intergenic Intergenic -158528 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 162-64 chr5 98800676 98800933 + 0.75 NA Intergenic AluSc5|SINE|Alu 27141 NM_001366508 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 147-115 chr8 129557916 129558197 + 0.75 NA intron (NR_130917, intron 1 of 3) MIR|SINE|MIR 16962 NR_130918 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 226-27 chr6 128875805 128876301 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR -7085 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 167.5-36 chr2 2593449 2593716 + 0.75 NA Intergenic L1M1|LINE|L1 -262307 NM_001329844 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 268-13 chr5 60686946 60687335 + 0.75 NA exon (NM_018369, exon 2 of 11) exon (NM_018369, exon 2 of 11) 13026 NM_001145208 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 232.25 chr1 41927217 41927937 + 0.75 NA intron (NR_038261, intron 1 of 3) intron (NR_038261, intron 1 of 3) -8655 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 149.75 chr1 12446719 12446961 + 0.75 NA intron (NM_015378, intron 65 of 69) intron (NM_015378, intron 65 of 69) -60406 NR_003022 677882 Hs.658450 NR_003022 ENSG00000266079 SNORA59B ACA59 small nucleolar RNA, H/ACA box 59B snoRNA 250.75-4 chr11 84276333 84276796 + 0.75 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -3284 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 382.5-2 chr2 120553132 120553730 + 0.75 NA Intergenic Intergenic -87082 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 180.25-8 chr10 37823707 37824035 + 0.75 NA intron (NM_001352493, intron 5 of 6) AluSx|SINE|Alu -28696 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 173.75-40 chr20 35774628 35775125 + 0.75 NA intron (NM_016436, intron 1 of 17) intron (NM_016436, intron 1 of 17) 2861 NM_016436 51230 Hs.517044 NM_016436 ENSG00000025293 PHF20 C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP PHD finger protein 20 protein-coding 173-49 chr3 182572258 182572677 + 0.75 NA Intergenic L1M2c|LINE|L1 -65343 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 361.25 chr11 115356236 115356879 + 0.75 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 22980 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 200 chr1 108563033 108563541 + 0.75 NA intron (NM_001010883, intron 1 of 10) MER68|LTR|ERVL 3187 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 154.5-31 chr15 24780936 24781338 + 0.75 NA Intergenic L1MC3|LINE|L1 -42471 NM_001349457 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 190.5-58 chr7 39545842 39546194 + 0.75 NA Intergenic Intergenic -20386 NM_020192 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 233.25-8 chr11 56134091 56134402 + 0.75 NA Intergenic Intergenic 3472 NM_001004064 81168 Hs.554523 NM_001004064 ENSG00000167822 OR8J3 OR11-173 olfactory receptor family 8 subfamily J member 3 protein-coding 274.75-14 chr4 95508414 95508819 + 0.75 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 40357 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 177.5-34 chr3 120712246 120712543 + 0.75 NA intron (NM_173825, intron 2 of 7) intron (NM_173825, intron 2 of 7) -30155 NM_000187 3081 Hs.368254 NM_000187 ENSG00000113924 HGD AKU|HGO homogentisate 1,2-dioxygenase protein-coding 204-25 chr2 209404331 209404926 + 0.75 NA Intergenic AluY|SINE|Alu -19419 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 212.75-4 chr11 36775234 36775730 + 0.75 NA Intergenic Intergenic -177203 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 150.75-81 chr6 40298545 40298884 + 0.75 NA Intergenic L2b|LINE|L2 57292 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 153.25-9 chr1 76977185 76977443 + 0.75 NA intron (NM_001320274, intron 2 of 2) L1MA6|LINE|L1 -82829 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 261-20 chr8 131875394 131875897 + 0.75 NA Intergenic MER67C|LTR|ERV1 -28448 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 226.25-29 chr8 57548275 57548623 + 0.75 NA Intergenic Intergenic -197700 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 232.25-30 chr6 116700989 116701601 + 0.75 NA intron (NM_001366310, intron 5 of 8) intron (NM_001366310, intron 5 of 8) 20084 NM_001366310 3841 Hs.182971 NM_002269 ENSG00000196911 KPNA5 IPOA6|SRP6 karyopherin subunit alpha 5 protein-coding 213.5-16 chr13 64755916 64756329 + 0.75 NA Intergenic LTR8|LTR|ERV1 -680111 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 170.5-20 chr14 66033748 66034112 + 0.75 NA Intergenic Intergenic -452441 NR_110307 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 193.5-51 chr4 47703098 47703631 + 0.75 NA intron (NM_006587, intron 5 of 21) intron (NM_006587, intron 5 of 21) 50695 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 192.25-43 chr3 167510493 167510791 + 0.75 NA intron (NM_001348951, intron 16 of 18) intron (NM_001348951, intron 16 of 18) -36510 NM_006217 5276 Hs.445555 NM_006217 ENSG00000114204 SERPINI2 MEPI|PANCPIN|PI14|TSA2004 serpin family I member 2 protein-coding 286.25-3 chr11 76830913 76831592 + 0.75 NA Intergenic Intergenic -29666 NM_001300955 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 236.25 chr1 32141712 32142114 + 0.75 NA intron (NM_012316, intron 1 of 13) MLT1B|LTR|ERVL-MaLR 33857 NM_012316 23633 Hs.470588 NM_012316 ENSG00000025800 KPNA6 IPOA7|KPNA7 karyopherin subunit alpha 6 protein-coding 176.25-52 chr5 104891439 104891835 + 0.75 NA Intergenic LTR67B|LTR|ERVL -207837 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 236 chr1 93922092 93922661 + 0.75 NA Intergenic AluSx1|SINE|Alu -12778 NM_001308253 2730 Hs.315562 NM_002061 ENSG00000023909 GCLM GLCLR glutamate-cysteine ligase modifier subunit protein-coding 299.5-3 chr12 12833596 12834208 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR 20556 NM_201224 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 195.25-55 chr8 83609476 83609889 + 0.75 NA Intergenic Intergenic 205924 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 171.75-79 chr7 112562163 112562457 + 0.75 NA Intergenic MamRep434|DNA|TcMar-Tigger -55755 NR_110160 100996249 Hs.561749 NR_110159 LOC100996249 - uncharacterized LOC100996249 ncRNA 281.5-25 chr5 123951525 123952286 + 0.75 NA Intergenic L2c|LINE|L2 406488 NM_001270572 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 184.75-67 chr6 115601774 115602079 + 0.75 NA Intergenic Intergenic 41909 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 162.5-7 chr1 108883332 108883616 + 0.75 NA intron (NM_001321038, intron 1 of 14) L3b|LINE|CR1 6489 NM_001321038 29899 Hs.584901 NM_013296 ENSG00000121957 GPSM2 CMCS|DFNB82|LGN|PINS G protein signaling modulator 2 protein-coding 297.75-5 chr18 64910201 64910944 + 0.75 NA Intergenic Intergenic -650517 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 172.75-53 chr5 43634043 43634503 + 0.75 NA intron (NM_012343, intron 7 of 21) intron (NM_012343, intron 7 of 21) -31043 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 172-90 chr9 82261730 82262308 + 0.75 NA Intergenic Intergenic 273247 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 162.25-23 chr15 92986196 92986456 + 0.75 NA intron (NM_001271, intron 26 of 38) intron (NM_001271, intron 26 of 38) 81927 NR_036136 100422995 NR_036136 ENSG00000284324 MIR3175 mir-3175 microRNA 3175 ncRNA 268.75-11 chr5 115540790 115541397 + 0.75 NA intron (NM_020177, intron 2 of 2) L1M5|LINE|L1 3682 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 198.5-26 chr2 36485724 36486116 + 0.75 NA intron (NM_016441, intron 7 of 16) intron (NM_016441, intron 7 of 16) 112248 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 160.5-102 chr6 87854291 87854692 + 0.75 NA intron (NR_110869, intron 2 of 4) intron (NR_110869, intron 2 of 4) 69631 NR_110869 101928911 Hs.571178 NR_110869 LOC101928911 - uncharacterized LOC101928911 ncRNA 159.5-103 chr9 1380643 1380915 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 329292 NM_001370532 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 152.75-28 chr13 69266862 69267239 + 0.75 NA intron (NR_125752, intron 1 of 3) intron (NR_125752, intron 1 of 3) 44704 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 150.25-42 chr17 58002340 58002775 + 0.75 NA non-coding (NR_034041, exon 4 of 4) non-coding (NR_034041, exon 4 of 4) 4689 NM_006924 6426 Hs.68714 NM_006924 ENSG00000136450 SRSF1 ASF|SF2|SF2p33|SFRS1|SRp30a serine and arginine rich splicing factor 1 protein-coding 207.5-14 chr13 100394597 100395021 + 0.75 NA intron (NR_148027, intron 20 of 23) intron (NR_148027, intron 20 of 23) 86206 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 263.25-20 chr5 90011579 90012200 + 0.75 NA Intergenic Intergenic 4831 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 367.25-5 chr8 108666840 108667735 + 0.75 NA intron (NR_136411, intron 1 of 3) intron (NR_136411, intron 1 of 3) 120307 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 202.25-14 chr12 48165524 48166087 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -8290 NM_001319300 140461 Hs.432699 NM_024095 ENSG00000177981 ASB8 PP14212 ankyrin repeat and SOCS box containing 8 protein-coding 304-3 chr2 133754394 133755049 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -186258 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 153-5 chr1 229499133 229499477 + 0.75 NA intron (NM_018230, intron 5 of 25) intron (NM_018230, intron 5 of 25) 9036 NM_018230 55746 Hs.12457 NM_018230 ENSG00000069248 NUP133 GAMOS8|NPHS18|hNUP133 nucleoporin 133 protein-coding 184.25-54 chr5 34934792 34935062 + 0.75 NA intron (NM_194283, intron 2 of 12) intron (NM_194283, intron 2 of 12) 5334 NM_194283 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 167.75-102 chrX 49927719 49928085 + 0.75 NA intron (NM_001127899, intron 3 of 14) L1MA4|LINE|L1 5306 NM_001127898 1184 Hs.166486 NM_000084 ENSG00000171365 CLCN5 CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2 chloride voltage-gated channel 5 protein-coding 226.75-23 chr5 111190050 111190570 + 0.75 NA Intergenic MIR|SINE|MIR -33273 NM_001323375 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 299.75-6 chr8 82048235 82048695 + 0.75 NA Intergenic Intergenic -206179 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 165-87 chr8 59836081 59836561 + 0.75 NA Intergenic Intergenic 445079 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 234.5-14 chr2 43936284 43936713 + 0.75 NA intron (NM_133259, intron 23 of 37) intron (NM_133259, intron 23 of 37) 59491 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 167-18 chr13 71107208 71107557 + 0.75 NA intron (NR_047699, intron 1 of 3) AluJo|SINE|Alu 92241 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 192.75-56 chr5 171287959 171288393 + 0.75 NA intron (NM_022897, intron 25 of 27) intron (NM_022897, intron 25 of 27) -21072 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 171.75-13 chr10 86412380 86412843 + 0.75 NA Intergenic Intergenic -45816 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 251.75-13 chr2 31524358 31524995 + 0.75 NA 3' UTR (NM_000348, exon 5 of 5) 3' UTR (NM_000348, exon 5 of 5) 56262 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 148.25-2 chr1 117702851 117703103 + 0.75 NA Intergenic L2a|LINE|L2 96929 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 174.25-37 chr22 27382861 27383148 + 0.75 NA Intergenic Intergenic 72353 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 254.75-21 chr7 45265580 45266111 + 0.75 NA Intergenic L2a|LINE|L2 108054 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 224.25-38 chr8 129071128 129071600 + 0.75 NA Intergenic THE1D-int|LTR|ERVL-MaLR -105363 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 271.25-14 chr4 168211374 168211929 + 0.75 NA Intergenic L1MD2|LINE|L1 107101 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 212.5-57 chr8 112910178 112910667 + 0.75 NA intron (NM_001363185, intron 8 of 66) intron (NM_001363185, intron 8 of 66) 266929 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 175.75-10 chr12 17263552 17263816 + 0.75 NA Intergenic L1ME3D|LINE|L1 274937 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 232.75-26 chr5 9289436 9289937 + 0.75 NA intron (NM_003966, intron 5 of 22) Charlie7|DNA|hAT-Charlie -221647 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 216.25-9 chr11 91071202 91071561 + 0.75 NA Intergenic Intergenic -202179 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 178-58 chr6 68930850 68931161 + 0.75 NA intron (NM_001704, intron 4 of 31) intron (NM_001704, intron 4 of 31) 295723 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 263.25-29 chr9 86593397 86594196 + 0.75 NA Intergenic Intergenic -239386 NM_024617 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 252.75-4 chr10 117687614 117688065 + 0.75 NA Intergenic MIRb|SINE|MIR -142771 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 175.5-54 chr20 51463218 51463513 + 0.75 NA intron (NM_012340, intron 5 of 10) intron (NM_012340, intron 5 of 10) -10388 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 168.25-32 chr2 22899675 22900015 + 0.75 NA Intergenic Intergenic 363366 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 216.5-43 chr8 81271415 81271781 + 0.75 NA Intergenic Intergenic -8938 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 157-25 chr11 122472776 122473159 + 0.75 NA Intergenic Intergenic -50096 NR_137179 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 236-3 chr10 107329808 107330386 + 0.75 NA Intergenic L1ME3A|LINE|L1 -165391 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 165.75-49 chr2 210790548 210790832 + 0.75 NA Intergenic Arthur1|DNA|hAT-Tip100 173119 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 204-15 chr16 87438283 87438648 + 0.75 NA intron (NM_015144, intron 2 of 12) Kanga1d|DNA|TcMar-Tc2 46129 NM_022818 81631 Hs.356061 NM_022818 ENSG00000140941 MAP1LC3B ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a microtubule associated protein 1 light chain 3 beta protein-coding 245.25-11 chr17 70266354 70266802 + 0.75 NA Intergenic Intergenic 97043 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 192.25-7 chr10 32974104 32974612 + 0.75 NA Intergenic Intergenic -16128 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 197.5-21 chr15 60364449 60364977 + 0.75 NA intron (NM_001002857, intron 4 of 13) intron (NM_001002857, intron 4 of 13) 33273 NM_001002857 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 160-32 chr18 52014190 52014546 + 0.75 NA Intergenic Intergenic -325829 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 152.5-94 chr5 151183684 151184028 + 0.75 NA intron (NM_015621, intron 8 of 8) MIRb|SINE|MIR -26077 NM_001155 309 Hs.412117 NM_001155 ENSG00000197043 ANXA6 ANX6|CBP68|CPB-II|p68|p70 annexin A6 protein-coding 183.5-14 chr12 104564525 104565017 + 0.75 NA intron (NM_018413, intron 1 of 2) THE1B|LTR|ERVL-MaLR -26862 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 190-47 chr5 24613846 24614227 + 0.75 NA intron (NM_001362460, intron 1 of 9) intron (NM_001362460, intron 1 of 9) 30942 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 163.5-48 chr17 71042317 71042594 + 0.75 NA Intergenic Intergenic 159724 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 230-5 chr14 47156160 47156529 + 0.75 NA intron (NM_001113498, intron 3 of 16) intron (NM_001113498, intron 3 of 16) 186902 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 153.75-86 chr8 78421163 78421665 + 0.75 NA Intergenic Intergenic -94926 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 151.75-73 chr4 122750690 122750909 + 0.75 NA Intergenic Intergenic 18095 NM_152618 166379 Hs.400698 NM_152618 ENSG00000181004 BBS12 C4orf24 Bardet-Biedl syndrome 12 protein-coding 170.25-63 chr6 124849961 124850388 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR -112371 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 330.75-7 chr5 95466227 95466870 + 0.75 NA intron (NM_014639, intron 42 of 42) intron (NM_014639, intron 42 of 42) 75182 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 155.5-11 chr10 77986499 77986776 + 0.75 NA intron (NM_007055, intron 21 of 30) intron (NM_007055, intron 21 of 30) 42878 NM_007055 11128 Hs.436896 NM_007055 ENSG00000148606 POLR3A ADDH|HLD7|RPC1|RPC155|WDRTS|hRPC155 RNA polymerase III subunit A protein-coding 269.25 chr1 9267773 9268171 + 0.75 NA 3' UTR (NM_004285, exon 5 of 5) 3' UTR (NM_004285, exon 5 of 5) -24922 NM_025106 80176 Hs.8261 NM_025106 ENSG00000171621 SPSB1 SSB-1|SSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding 187.75-29 chr17 63929965 63930254 + 0.75 NA exon (NM_001039933, exon 3 of 6) exon (NM_001039933, exon 3 of 6) 2222 NM_001329050 974 Hs.89575 NM_000626 ENSG00000007312 CD79B AGM6|B29|IGB CD79b molecule protein-coding 160-62 chr4 88262898 88263165 + 0.75 NA intron (NM_152542, intron 6 of 6) intron (NM_152542, intron 6 of 6) 21530 NM_152542 152926 Hs.43744 NM_152542 ENSG00000163644 PPM1K BDP|MSUDMV|PP2Ckappa|PP2Cm|PTMP|UG0882E07 protein phosphatase, Mg2+/Mn2+ dependent 1K protein-coding 200.5-19 chr14 77394132 77394539 + 0.75 NA 3' UTR (NM_001113475, exon 6 of 6) 3' UTR (NM_001113475, exon 6 of 6) 16957 NM_001010860 161394 Hs.421961 NM_001010860 ENSG00000100583 SAMD15 C14orf174|FAM15A sterile alpha motif domain containing 15 protein-coding 220-32 chr8 80583959 80584492 + 0.75 NA Intergenic Intergenic 97999 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 165.5-16 chr11 4054839 4055255 + 0.75 NA intron (NM_001277962, intron 3 of 12) (TGGA)n|Simple_repeat|Simple_repeat -39638 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 285-8 chr8 117048016 117048642 + 0.75 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -86666 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 267.75 chr10 35031169 35031860 + 0.75 NA exon (NM_001198777, exon 13 of 21) exon (NM_001198777, exon 13 of 21) 42769 NM_001198778 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 350.25-5 chr7 84446717 84447633 + 0.75 NA Intergenic MER52A|LTR|ERV1 -85301 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 221.25-5 chr1 180491466 180491959 + 0.75 NA intron (NM_032360, intron 3 of 7) intron (NM_032360, intron 3 of 7) 10865 NM_032360 84320 Hs.200051 NM_032360 ENSG00000230124 ACBD6 - acyl-CoA binding domain containing 6 protein-coding 152.5-101 chr7 12241966 12242223 + 0.75 NA 3' UTR (NM_018374, exon 9 of 9) 3' UTR (NM_018374, exon 9 of 9) 30800 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 176-50 chr4 107280171 107280680 + 0.75 NA Intergenic Intergenic -244112 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 237.75-23 chr5 62089575 62090175 + 0.75 NA Intergenic L1ME3B|LINE|L1 -216287 NM_004520 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 166.75-89 chr8 42646085 42646500 + 0.75 NA Intergenic AluSx4|SINE|Alu -51074 NM_000749 1142 Hs.654576 NM_000749 ENSG00000147432 CHRNB3 - cholinergic receptor nicotinic beta 3 subunit protein-coding 152.25-86 chr5 172520279 172520573 + 0.75 NA Intergenic L1MC1|LINE|L1 38588 NR_146726 105377728 Hs.131465 NR_146726 LINC01944 CTB-54I1.1 long intergenic non-protein coding RNA 1944 ncRNA 168.75-39 chr2 13953715 13954153 + 0.75 NA Intergenic Intergenic 447024 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 193-46 chr5 122016275 122016753 + 0.75 NA intron (NM_152546, intron 4 of 7) HAL1|LINE|L1 54539 NM_152546 153443 Hs.107622 NM_152546 ENSG00000151304 SRFBP1 BUD22|P49|Rlb1|STRAP|p49/STRAP serum response factor binding protein 1 protein-coding 209-5 chr1 244604843 244605220 + 0.75 NA intron (NM_001130957, intron 17 of 21) intron (NM_001130957, intron 17 of 21) -48017 NR_123736 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 158.75-29 chr14_GL000225v1_random 7386 7605 + 0.75 NA NA BSR/Beta|Satellite|Satellite NA NA 193-4 chr1 118180233 118180742 + 0.75 NA intron (NM_206996, intron 1 of 48) L1MA4|LINE|L1 4741 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 234-19 chr8 116406726 116407371 + 0.75 NA Intergenic MIRb|SINE|MIR -81989 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 262.75-7 chr15 59116017 59116576 + 0.75 NA intron (NM_004701, intron 5 of 8) intron (NM_004701, intron 5 of 8) 11150 NM_004701 9133 Hs.194698 NM_004701 ENSG00000157456 CCNB2 HsT17299 cyclin B2 protein-coding 173.75-39 chr2 220534183 220534607 + 0.75 NA Intergenic LTR80A|LTR|ERVL -627830 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 204.75-23 chr19 31447212 31447652 + 0.75 NA Intergenic Intergenic -97996 NR_138035 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 175.25-44 chr3 119027590 119027952 + 0.75 NA intron (NM_001353319, intron 1 of 7) intron (NM_001353319, intron 1 of 7) 7075 NM_001353323 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 192-19 chr15 61724143 61724413 + 0.75 NA Intergenic Intergenic -5640 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 179-31 chr2 179985523 179985976 + 0.75 NA intron (NM_020943, intron 4 of 19) MER44A|DNA|TcMar-Tigger 21548 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 163.75-55 chr4 167036229 167036591 + 0.75 NA intron (NM_001204354, intron 2 of 9) intron (NM_001204354, intron 2 of 9) 198016 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 153.75-82 chr7 82889283 82889690 + 0.75 NA intron (NM_033026, intron 9 of 24) intron (NM_033026, intron 9 of 24) 273398 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 170-23 chr17 64445860 64446293 + 0.75 NA Intergenic (TTTCC)n|Simple_repeat|Simple_repeat -3039 NM_001291317 284021 Hs.631749 NM_001085423 ENSG00000271605 MILR1 Allergin-1|C17orf60|MCA-32|MCA32 mast cell immunoglobulin like receptor 1 protein-coding 156.5-18 chr10 18391073 18391344 + 0.75 NA intron (NM_201590, intron 1 of 12) intron (NM_201590, intron 1 of 12) -9367 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 168.5-95 chr8 50968602 50969018 + 0.75 NA Intergenic L1MEd|LINE|L1 804679 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 176.25-4 chr1 221576285 221576609 + 0.75 NA Intergenic MER57C2|LTR|ERV1 160453 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 232.25-29 chr6 97443391 97443891 + 0.75 NA intron (NR_110757, intron 1 of 4) intron (NR_110757, intron 1 of 4) 138055 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 216.25-16 chr19 28405132 28405442 + 0.75 NA Intergenic Intergenic -201401 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 394.75 chr5 156231580 156232755 + 0.75 NA Intergenic Intergenic -94590 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 151-101 chr8 107269272 107269577 + 0.75 NA intron (NM_001199859, intron 7 of 8) intron (NM_001199859, intron 7 of 8) 67091 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 272.5-10 chr21 29208434 29208841 + 0.75 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) 15143 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 186.75-43 chr2 146930657 146931169 + 0.75 NA Intergenic LTR1A2|LTR|ERV1 343856 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 213-3 chr1 210334568 210334914 + 0.75 NA intron (NM_001170580, intron 1 of 11) L1ME3A|LINE|L1 5375 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 153.25-46 chr17 61290772 61291136 + 0.75 NA intron (NM_001330413, intron 23 of 25) AluY|SINE|Alu 76750 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 204.75-47 chr6 86347396 86347773 + 0.75 NA Intergenic THE1B-int|LTR|ERVL-MaLR -589944 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 206-24 chr3 130258804 130259121 + 0.75 NA intron (NR_027898, intron 19 of 22) L2c|LINE|L2 46142 NR_027898 646300 Hs.170475 NR_027898 COL6A4P2 COL6A4 collagen type VI alpha 4 pseudogene 2 pseudo 215.25-22 chr2 187429699 187430313 + 0.75 NA intron (NM_005795, intron 1 of 14) intron (NM_005795, intron 1 of 14) 18246 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 192.5-22 chr2 22625358 22625793 + 0.75 NA Intergenic MIR|SINE|MIR 89096 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 155-70 chr4 55639788 55640133 + 0.75 NA Intergenic AluJr4|SINE|Alu -3167 NR_120489 10874 Hs.418367 NM_006681 ENSG00000109255 NMU - neuromedin U protein-coding 164.25-34 chr16 50071551 50072073 + 0.75 NA intron (NM_001329731, intron 4 of 13) intron (NM_001329731, intron 4 of 13) 5842 NM_001329729 55027 Hs.733027 NM_017939 ENSG00000155393 HEATR3 SYO1 HEAT repeat containing 3 protein-coding 154.5-29 chr14 61462752 61463164 + 0.75 NA intron (NM_006255, intron 9 of 13) MIRb|SINE|MIR 107236 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 247.75-24 chr5 125541640 125542092 + 0.75 NA intron (NR_109887, intron 3 of 3) L1M4|LINE|L1 48605 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 152.5-39 chr17 61174698 61175002 + 0.75 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 192854 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 353.75-3 chr18 73221927 73222618 + 0.75 NA intron (NR_034133, intron 2 of 5) Charlie6|DNA|hAT-Charlie 42226 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 152.5-61 chr20 12875265 12875627 + 0.75 NA intron (NR_109868, intron 10 of 11) intron (NR_109868, intron 10 of 11) 61517 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 176-3 chr10 17238112 17238517 + 0.75 NA TTS (NM_003380) TTS (NM_003380) -8329 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 258-10 chr18 62924127 62924540 + 0.75 NA intron (NM_194449, intron 10 of 16) intron (NM_194449, intron 10 of 16) 208792 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 188.75-55 chr6 138059838 138060282 + 0.75 NA Intergenic AluSx3|SINE|Alu 47359 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 169-62 chr7 7148466 7148785 + 0.75 NA Intergenic MER2|DNA|TcMar-Tigger -33990 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 183-61 chr9 72780404 72780777 + 0.75 NA intron (NM_138691, intron 13 of 23) L1PA15|LINE|L1 93519 NR_121180 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 320.5-6 chr2 188596883 188597645 + 0.75 NA Intergenic Intergenic 192859 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 194.25-34 chr4 117725382 117725809 + 0.75 NA Intergenic Intergenic -108806 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 161.75-15 chr13 99176360 99176730 + 0.75 NA Intergenic Intergenic 24210 NR_036532 100289373 Hs.225914 NR_036531 ENSG00000228889 UBAC2-AS1 - UBAC2 antisense RNA 1 ncRNA 169.5-58 chr3 106232372 106232767 + 0.75 NA Intergenic MIRb|SINE|MIR -363168 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 183.75-87 chr7 33401933 33402331 + 0.75 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 272568 NM_001348040 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 153-23 chr14 66039324 66039582 + 0.75 NA Intergenic Intergenic -446918 NR_110307 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 299 chr1 111306573 111307288 + 0.75 NA intron (NM_021797, intron 1 of 8) L1ME3D|LINE|L1 16079 NM_001258001 27159 Hs.128814 NM_021797 ENSG00000134216 CHIA AMCASE|CHIT2|TSA1902 chitinase acidic protein-coding 304.75-3 chr3 4411580 4412112 + 0.75 NA intron (NM_001164674, intron 5 of 7) intron (NM_001164674, intron 5 of 7) 55423 NM_182760 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 152-95 chr8 71949634 71949993 + 0.75 NA intron (NR_033651, intron 1 of 2) L1MEh|LINE|L1 -105317 NM_005098 9242 Hs.442619 NM_005098 ENSG00000178860 MSC ABF-1|ABF1|MYOR|bHLHa22 musculin protein-coding 148-50 chr2 58910457 58910909 + 0.75 NA intron (NR_033873, intron 3 of 13) intron (NR_033873, intron 3 of 13) -307025 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 150-57 chr3 34751000 34751333 + 0.75 NA Intergenic L1PA16|LINE|L1 642857 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 257.25-21 chr5 44653484 44653928 + 0.75 NA Intergenic L1ME1|LINE|L1 -143424 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 179-30 chr2 139607227 139607753 + 0.75 NA Intergenic L1MA2|LINE|L1 710166 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 154-105 chr8 117149230 117149677 + 0.75 NA intron (NM_173851, intron 2 of 7) MIR|SINE|MIR 14458 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 189.5-30 chr2 48660591 48661084 + 0.75 NA intron (NM_172311, intron 8 of 10) AluSz6|SINE|Alu 42981 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 225-2 chr1 226362310 226362839 + 0.75 NA intron (NM_001618, intron 21 of 22) intron (NM_001618, intron 21 of 22) 45519 NM_001618 142 Hs.177766 NM_001618 ENSG00000143799 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly(ADP-ribose) polymerase 1 protein-coding 167.75-89 chr8 82053373 82053782 + 0.75 NA Intergenic Intergenic -211291 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 258.25-16 chr4 76382451 76382967 + 0.75 NA exon (NM_001042784, exon 7 of 24) exon (NM_001042784, exon 7 of 24) 24596 NM_001042784 339965 Hs.529680 NM_178555 ENSG00000163749 CCDC158 - coiled-coil domain containing 158 protein-coding 196-44 chr6 103657617 103657924 + 0.75 NA Intergenic THE1B-int|LTR|ERVL-MaLR 1201776 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 166.25-9 chr10 51865008 51865359 + 0.75 NA intron (NM_001098512, intron 4 of 17) intron (NM_001098512, intron 4 of 17) -165588 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 189.75-24 chr14 67846797 67847281 + 0.75 NA intron (NM_133509, intron 4 of 10) L1PA16|LINE|L1 23447 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 203.75-17 chr20 47257354 47257715 + 0.75 NA intron (NM_001281784, intron 11 of 20) (CA)n|Simple_repeat|Simple_repeat -60968 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 174-15 chr12 4805766 4806181 + 0.75 NA Intergenic L2a|LINE|L2 -3203 NM_002235 3742 Hs.306190 NM_002235 ENSG00000130035 KCNA6 HBK2|KV1.6|PPP1R96 potassium voltage-gated channel subfamily A member 6 protein-coding 180-72 chr8 117007613 117007970 + 0.75 NA intron (NM_001172813, intron 2 of 10) MIRb|SINE|MIR 56816 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 151-81 chr6 43319698 43320038 + 0.75 NA Intergenic Intergenic -11042 NM_206922 401262 Hs.653165 NM_206922 ENSG00000146215 CRIP3 CRP-3|TLP|TLP-A|h6LIMo cysteine rich protein 3 protein-coding 197.25-8 chr10 31662217 31662669 + 0.75 NA Intergenic MIRb|SINE|MIR 246483 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 191.75-59 chr7 42416868 42417221 + 0.75 NA Intergenic Intergenic -179835 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 253.5-23 chr6 97142482 97142994 + 0.75 NA 3' UTR (NM_001350599, exon 25 of 25) 3' UTR (NM_001350599, exon 25 of 25) 132662 NR_136579 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 148.75-36 chr16 80116759 80117059 + 0.75 NA Intergenic Intergenic 321660 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 348.25-2 chr2 77043405 77044035 + 0.75 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 57755 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 375.75-3 chr5 27008071 27008994 + 0.75 NA intron (NM_016279, intron 1 of 11) intron (NM_016279, intron 1 of 11) 30054 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 254.75-2 chr1 110177022 110177662 + 0.75 NA intron (NM_001010898, intron 6 of 11) MIRc|SINE|MIR 26848 NM_001010898 388662 Hs.128382 NM_001010898 ENSG00000197106 SLC6A17 MRT48|NTT4 solute carrier family 6 member 17 protein-coding 290.25-12 chr8 87487896 87488534 + 0.75 NA Intergenic Intergenic 385800 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 184-8 chr10 124050121 124050389 + 0.75 NA intron (NM_001270765, intron 1 of 5) intron (NM_001270765, intron 1 of 5) 42151 NM_014863 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 216-24 chr3 26213074 26213582 + 0.75 NA Intergenic L1PA15|LINE|L1 -339633 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 147.5-50 chr2 207297381 207297742 + 0.75 NA Intergenic L1MB8|LINE|L1 -28137 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 178-8 chr10 89738911 89739354 + 0.75 NA intron (NM_016195, intron 21 of 32) intron (NM_016195, intron 21 of 32) 37542 NM_016195 9585 Hs.240 NM_016195 ENSG00000138182 KIF20B CT90|KRMP1|MPHOSPH1|MPP-1|MPP1 kinesin family member 20B protein-coding 190.25-3 chr1 194110182 194110541 + 0.75 NA Intergenic Intergenic 805616 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 419 chr1 223075353 223076003 + 0.75 NA Intergenic LTR8A|LTR|ERV1 67570 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 194.5-9 chr10 94688972 94689563 + 0.75 NA intron (NM_000772, intron 3 of 8) intron (NM_000772, intron 3 of 8) 5538 NM_000772 1562 Hs.511872 NM_000772 ENSG00000108242 CYP2C18 CPCI|CYP2C|CYP2C17|P450-6B/29C|P450IIC17 cytochrome P450 family 2 subfamily C member 18 protein-coding 171.5-102 chr8 132132978 132133279 + 0.75 NA intron (NM_001204824, intron 13 of 14) MER102b|DNA|hAT-Charlie -27863 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 148.75-45 chr2 30552829 30553181 + 0.75 NA intron (NM_001304446, intron 3 of 5) intron (NM_001304446, intron 3 of 5) 105759 NM_001304445 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 154.5-4 chr1 65942208 65942457 + 0.75 NA intron (NM_002600, intron 3 of 16) L1MA8|LINE|L1 29087 NM_001297441 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 241-26 chr4 139371065 139371456 + 0.75 NA intron (NM_057175, intron 15 of 19) intron (NM_057175, intron 15 of 19) -68709 NM_001184990 4717 Hs.84549 NM_002494 ENSG00000109390 NDUFC1 KFYI NADH:ubiquinone oxidoreductase subunit C1 protein-coding 183.5-20 chr15 39814129 39814466 + 0.75 NA intron (NM_001271854, intron 1 of 3) L1MEf|LINE|L1 14979 NM_001271855 11245 Hs.37196 NM_007223 ENSG00000166073 GPR176 HB-954 G protein-coupled receptor 176 protein-coding 150-42 chr2 138406212 138406595 + 0.75 NA Intergenic L1MA10|LINE|L1 -95367 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 240-2 chr10 33697455 33697810 + 0.75 NA Intergenic L1ME1|LINE|L1 75048 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 181.5-28 chr15 96404199 96404577 + 0.75 NA Intergenic AluSz|SINE|Alu 70623 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 153-26 chr16 52276651 52277060 + 0.75 NA intron (NR_135281, intron 1 of 2) intron (NR_135281, intron 1 of 2) 18291 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 177-36 chr21 31122901 31123222 + 0.75 NA intron (NM_001353684, intron 12 of 12) intron (NM_001353684, intron 12 of 12) 37879 NM_001353685 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 185.25-28 chr16 22687296 22687695 + 0.75 NA Intergenic LTR47A2|LTR|ERVL -126667 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 260.75-14 chr2 35011171 35011677 + 0.75 NA Intergenic Intergenic 333867 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 156.25-90 chr7 120768980 120769280 + 0.75 NA Intergenic Intergenic 89014 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 151.5-66 chr3 86237237 86237506 + 0.75 NA Intergenic Intergenic -244572 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 170.25-48 chr3 106058790 106059137 + 0.75 NA Intergenic Intergenic -189562 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 179.75-33 chr3 30713716 30714098 + 0.75 NA Intergenic L1MD|LINE|L1 107306 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 165-91 chr8 133322486 133322835 + 0.75 NA Intergenic L2b|LINE|L2 -25356 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 210.25-6 chr11 15746583 15747027 + 0.75 NA Intergenic MSTB|LTR|ERVL-MaLR 102920 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 195.25-21 chr18 10987791 10988135 + 0.75 NA intron (NM_022068, intron 2 of 51) L1MA10|LINE|L1 160799 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 174-45 chr4 138184121 138184513 + 0.75 NA intron (NM_014331, intron 7 of 11) intron (NM_014331, intron 7 of 11) -53632 NR_037866 641365 Hs.435630 NR_037866 ENSG00000248307 LINC00616 - long intergenic non-protein coding RNA 616 ncRNA 280-7 chr3 191907808 191908522 + 0.75 NA Intergenic L1MEd|LINE|L1 -330465 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 238-7 chr12 118565472 118566033 + 0.75 NA Intergenic L1ME3|LINE|L1 189197 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 222.75-31 chr5 45623341 45623787 + 0.75 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 72816 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 160-68 chr5 106738517 106738807 + 0.75 NA Intergenic L1MEc|LINE|L1 272352 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 181-41 chr6 148625049 148625550 + 0.75 NA Intergenic Intergenic 116148 NM_001346509 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 260.75-8 chr13 62416192 62416608 + 0.75 NA Intergenic Intergenic 92743 NR_047038 100874180 Hs.7415 NR_047038 ENSG00000229307 LINC00459 - long intergenic non-protein coding RNA 459 ncRNA 259.25-7 chr3 44791852 44792532 + 0.75 NA intron (NM_020242, intron 7 of 34).2 intron (NM_020242, intron 7 of 34).2 30398 NM_020242 56992 Hs.658939 NM_020242 ENSG00000163808 KIF15 HKLP2|KLP2|KNSL7|NY-BR-62 kinesin family member 15 protein-coding 185-8 chr10 53319346 53319596 + 0.75 NA Intergenic MIRb|SINE|MIR -547771 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 190.5-48 chr5 26114455 26114856 + 0.75 NA Intergenic L1ME1|LINE|L1 923702 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 243 chr1 235950098 235950711 + 0.75 NA Intergenic Intergenic -66691 NR_102436 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 181.5-8 chr1 231518087 231518425 + 0.75 NA Intergenic Intergenic -10397 NR_028397 100303453 Hs.13318 NR_028393 ENSG00000270106 TSNAX-DISC1 - TSNAX-DISC1 readthrough (NMD candidate) ncRNA 232-13 chr14 65758081 65758561 + 0.75 NA Intergenic Intergenic 287219 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 164.75-67 chr5 20122431 20122813 + 0.75 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -134422 NM_001349561 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 147.25-57 chr3 97698340 97698748 + 0.75 NA intron (NM_001080448, intron 14 of 17) intron (NM_001080448, intron 14 of 17) -65977 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 168.5-101 chr9 10326333 10326580 + 0.75 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 286546 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 192.5-59 chr7 108309923 108310406 + 0.75 NA intron (NM_001371126, intron 3 of 32) intron (NM_001371126, intron 3 of 32) 18362 NM_001371179 296.25-9 chr4 43558652 43559351 + 0.75 NA Intergenic L1MB8|LINE|L1 -66458 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 220.75-5 chr12 29919421 29919874 + 0.75 NA Intergenic L1PREC2|LINE|L1 -134888 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 157-15 chr10 58557643 58557890 + 0.75 NA intron (NM_001080512, intron 1 of 20) L1MEc|LINE|L1 44894 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 158.25-8 chr1 210656983 210657218 + 0.75 NA intron (NM_001122834, intron 11 of 11) intron (NM_001122834, intron 11 of 11) 327734 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 157.5-89 chr6 64246564 64246929 + 0.75 NA intron (NM_001292009, intron 30 of 43) intron (NM_001292009, intron 30 of 43) 439910 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 203.75-57 chrX 70125642 70126133 + 0.75 NA Intergenic Intergenic -7560 NM_001551 3476 Hs.496267 NM_001551 ENSG00000089289 IGBP1 ALPHA-4|IBP1 immunoglobulin binding protein 1 protein-coding 188.25-12 chr12 49271054 49271336 + 0.75 NA intron (NM_001303116, intron 4 of 4) intron (NM_001303116, intron 4 of 4) 6113 NM_032704 84790 Hs.652390 NM_032704 ENSG00000167553 TUBA1C TUBA6|bcm948 tubulin alpha 1c protein-coding 213.75-40 chr8 123111167 123111701 + 0.75 NA intron (NM_001363156, intron 9 of 19) L1MC5|LINE|L1 38185 NM_001363149 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 186.75-41 chr2 105805010 105805358 + 0.75 NA intron (NM_003581, intron 1 of 4) intron (NM_003581, intron 1 of 4) -46663 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 190.25-65 chr9 87801168 87801591 + 0.75 NA Intergenic Intergenic 28464 NR_027917 392360 Hs.690450 NM_001023564 ENSG00000188029 CTSL3P CTSL3|HCTSL-s cathepsin L family member 3, pseudogene pseudo 343.5-3 chr17 72080744 72081471 + 0.75 NA non-coding (NR_103737, exon 4 of 4) non-coding (NR_103737, exon 4 of 4) 8774 NR_110827 101928205 Hs.620808 NR_110827 ENSG00000226101 LINC02097 - long intergenic non-protein coding RNA 2097 ncRNA 211.5-39 chr5 56845230 56845577 + 0.75 NA intron (NM_005921, intron 1 of 19) intron (NM_005921, intron 1 of 19) 29854 NM_005921 4214 Hs.653654 NM_005921 ENSG00000095015 MAP3K1 MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 mitogen-activated protein kinase kinase kinase 1 protein-coding 154-3 chr1 60168367 60168794 + 0.75 NA Intergenic Intergenic -94810 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 228-28 chr7 54596395 54597136 + 0.75 NA Intergenic LTR9|LTR|ERV1 39795 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 210.25-3 chr1 106581808 106582123 + 0.75 NA Intergenic L1PA15|LINE|L1 -236274 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 246-7 chr22 21985202 21985721 + 0.75 NA Intergenic Intergenic -2674 NM_001349852 8940 Hs.436401 NM_003935 ENSG00000100038 TOP3B TOP3B1 DNA topoisomerase III beta protein-coding 229.25-25 chr9 117717917 117718306 + 0.75 NA 3' UTR (NM_003266, exon 4 of 4) 3' UTR (NM_003266, exon 4 of 4) 13708 NM_003266 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 220.25-24 chr2 178003727 178004130 + 0.75 NA intron (NM_001077197, intron 3 of 20) L1ME4a|LINE|L1 68849 NM_016953 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 203.75-44 chr7 95035546 95035969 + 0.75 NA intron (NM_017650, intron 2 of 15) intron (NM_017650, intron 2 of 15) 125859 NM_001166163 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 157.25-40 chr18 8190722 8190956 + 0.75 NA intron (NM_002845, intron 14 of 30) intron (NM_002845, intron 14 of 30) 176195 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 220.25 chr1 73231403 73231818 + 0.75 NA Intergenic L1ME2z|LINE|L1 -74560 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 194.75-28 chr3 97513746 97514312 + 0.75 NA intron (NM_001080448, intron 10 of 17) intron (NM_001080448, intron 10 of 17) 74422 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 200.75-7 chr10 82532575 82533016 + 0.75 NA intron (NR_163253, intron 3 of 10) L1MB1|LINE|L1 -299875 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 183-44 chr6 127281915 127282245 + 0.75 NA intron (NM_001242852, intron 3 of 4) intron (NM_001242852, intron 3 of 4) 15242 NM_001242850 81847 Hs.267120 NM_030963 ENSG00000118518 RNF146 - ring finger protein 146 protein-coding 263.75-16 chr5 63624503 63625020 + 0.75 NA Intergenic Intergenic 337531 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 147-11 chr10 55523310 55523711 + 0.75 NA intron (NM_001354404, intron 2 of 34) L1MA7|LINE|L1 -75532 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 299.25-7 chr2 31037369 31037919 + 0.75 NA intron (NM_024572, intron 1 of 14) L1M4|LINE|L1 91996 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 179.75-4 chr10 23779453 23779882 + 0.75 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 84940 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 199.25-49 chr4 136805185 136805552 + 0.75 NA intron (NR_149105, intron 3 of 3) MLT1C|LTR|ERVL-MaLR -388388 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 221.75-15 chr15 95097376 95097796 + 0.75 NA Intergenic Intergenic 229514 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 157.5-26 chr14 20286549 20286917 + 0.75 NA 3' UTR (NM_138376, exon 10 of 10) 3' UTR (NM_138376, exon 10 of 10) 19218 NM_138376 91875 Hs.98553 NM_138376 ENSG00000136319 TTC5 Strap tetratricopeptide repeat domain 5 protein-coding 153.75-74 chr6 62254055 62254511 + 0.75 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 31942 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 175-15 chr18 3018180 3018650 + 0.75 NA Intergenic AluJr|SINE|Alu -6468 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 227.25 chr1 80648409 80648980 + 0.75 NA Intergenic MamRep1879|DNA|hAT-Tip100? 7407 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 225.25-39 chr8 136951599 136952058 + 0.75 NA Intergenic L1ME3B|LINE|L1 421030 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 161.25-69 chr8 100819495 100819806 + 0.75 NA Intergenic L1MB3|LINE|L1 -97562 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 157.5-70 chr4 133130910 133131393 + 0.75 NA intron (NR_125885, intron 7 of 8) intron (NR_125885, intron 7 of 8) 17965 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 301.75-2 chr15 39403651 39404291 + 0.75 NA Intergenic MIR|SINE|MIR 153302 NR_144507 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 162.75-55 chr4 99789140 99789524 + 0.75 NA Intergenic L1MA3|LINE|L1 -27495 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 147.75-42 chr16 72388337 72388588 + 0.75 NA intron (NR_126330, intron 7 of 13) L1MEd|LINE|L1 -216012 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 201.75-34 chr6 9921771 9922220 + 0.75 NA Intergenic Intergenic -482507 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 209.5-4 chr1 163689890 163690320 + 0.75 NA Intergenic L1MC2|LINE|L1 -266914 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 231-21 chr5 111358353 111358928 + 0.75 NA intron (NM_001323376, intron 2 of 8) L1PREC2|LINE|L1 134256 NM_001323376 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 163.25-80 chr8 79256572 79257024 + 0.75 NA Intergenic L1MA9|LINE|L1 -75390 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 281.25-18 chr9 70859690 70860374 + 0.75 NA intron (NM_001366143, intron 3 of 25) intron (NM_001366143, intron 3 of 25) 9020 NM_206947 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 241.5-7 chr17 56991286 56991824 + 0.75 NA intron (NM_021626, intron 6 of 12) intron (NM_021626, intron 6 of 12) 13448 NM_021626 59342 Hs.514950 NM_021626 ENSG00000121064 SCPEP1 HSCP1|RISC serine carboxypeptidase 1 protein-coding 201.5-28 chr2 144767454 144767825 + 0.75 NA intron (NR_033870, intron 1 of 4) intron (NR_033870, intron 1 of 4) 99672 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 181.25-25 chr2 35967973 35968535 + 0.75 NA Intergenic Intergenic 387316 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 217.75-4 chr1 196481962 196482460 + 0.75 NA intron (NM_001287820, intron 4 of 26) intron (NM_001287820, intron 4 of 26) 100270 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 166.25-66 chr7 123191953 123192217 + 0.75 NA intron (NM_001324400, intron 1 of 17) intron (NM_001324400, intron 1 of 17) 7884 NM_022444 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 212.25-29 chr4 81325190 81325681 + 0.75 NA Intergenic Intergenic -110213 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 252.5-15 chr21 44805696 44806092 + 0.75 NA 3' UTR (NM_001286416, exon 4 of 4) 3' UTR (NM_001286416, exon 4 of 4) 3653 NR_109928 101928689 Hs.116142 NR_109928 LINC01424 - long intergenic non-protein coding RNA 1424 ncRNA 212.5-47 chr6 72357046 72357595 + 0.75 NA intron (NM_001350433, intron 21 of 25) intron (NM_001350433, intron 21 of 25) -9426 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 270.25-16 chr6 66193552 66194193 + 0.75 NA Intergenic L1MC4|LINE|L1 405993 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 149.75-21 chr12 95743146 95743547 + 0.75 NA intron (NM_001329701, intron 2 of 9) L1MEc|LINE|L1 46849 NM_001329702 59277 Hs.201034 NM_021229 ENSG00000074527 NTN4 PRO3091 netrin 4 protein-coding 149.25-119 chr9 31116133 31116461 + 0.75 NA Intergenic L1MB7|LINE|L1 265193 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 223-2 chr10 15486354 15486874 + 0.75 NA Intergenic Intergenic -115325 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 151.5-64 chr3 28177641 28177918 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR -63840 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 202.5-49 chr5 67240164 67240545 + 0.75 NA Intergenic Charlie23a|DNA|hAT-Charlie -43555 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 168-32 chr2 34285029 34285476 + 0.75 NA intron (NR_126403, intron 4 of 5) L1PA13|LINE|L1 218026 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 252.75-20 chr3 61783006 61783355 + 0.75 NA intron (NM_002841, intron 2 of 29) AluJr|SINE|Alu 221609 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 196.25-53 chr9 10284933 10285303 + 0.75 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 327884 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 201.5-43 chr4 33093017 33093575 + 0.75 NA Intergenic Intergenic 742258 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 213.25-28 chr22 49565740 49566077 + 0.75 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) -22442 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 232.5-35 chr4 47942478 47943079 + 0.75 NA intron (NM_000087, intron 8 of 10) MER1B|DNA|hAT-Charlie -28111 NM_001278623 152518 Hs.646325 NM_152995 ENSG00000170448 NFXL1 CDZFP|HOZFP|OZFP|URCC5 nuclear transcription factor, X-box binding like 1 protein-coding 217.75-21 chr2 209062153 209062532 + 0.75 NA Intergenic L1MC4a|LINE|L1 -361705 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 197.75-53 chr5 56219609 56219977 + 0.75 NA intron (NM_024669, intron 2 of 11) intron (NM_024669, intron 2 of 11) 13537 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 158.25-71 chr4 30441705 30442147 + 0.75 NA Intergenic L2c|LINE|L2 -278443 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 186.75-45 chr2 187974916 187975251 + 0.75 NA Intergenic Intergenic 312608 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 369.5 chr4 26345343 26346098 + 0.75 NA intron (NM_001363577, intron 1 of 10) intron (NM_001363577, intron 1 of 10) 24492 NM_001363577 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 160-28 chr16 78254126 78254395 + 0.75 NA intron (NM_001291997, intron 4 of 7) AluJb|SINE|Alu 154606 NM_016373 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 154.75-35 chr18 65973845 65974252 + 0.75 NA Intergenic AluSx3|SINE|Alu 223036 NM_004361 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 172.5-71 chr6 133048607 133049062 + 0.75 NA Intergenic Tigger3|DNA|TcMar-Tigger -39246 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 156.5-47 chr2 27636860 27637219 + 0.75 NA intron (NM_007266, intron 7 of 13) Tigger2a|DNA|TcMar-Tigger 7989 NM_007266 11321 Hs.18259 NM_007266 ENSG00000198522 GPN1 ATPBD1A|MBDIN|NTPBP|RPAP4|XAB1 GPN-loop GTPase 1 protein-coding 230.75-41 chr8 80576467 80577071 + 0.75 NA Intergenic MIR|SINE|MIR 90543 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 156-4 chr1 112517927 112518260 + 0.75 NA intron (NM_001291880, intron 4 of 4) intron (NM_001291880, intron 4 of 4) 9128 NM_024494 7482 Hs.258575 NM_004185 ENSG00000134245 WNT2B WNT13 Wnt family member 2B protein-coding 165.75-58 chr3 8465186 8465646 + 0.75 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 36242 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 165.5-72 chr5 66396106 66396622 + 0.75 NA Intergenic MIR|SINE|MIR 115240 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 260.75-10 chr14 49780862 49781330 + 0.75 NA TTS (NM_004713) TTS (NM_004713) 12943 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 160.25-87 chrX 96096288 96096608 + 0.75 NA Intergenic MIRb|SINE|MIR 241454 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 200-27 chr2 78057832 78058136 + 0.75 NA intron (NR_110288, intron 1 of 3) L1PBa|LINE|L1 -30746 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 152.75-48 chr2 78988279 78988576 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -37275 NM_001008387 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 163.5 chr1 8533662 8533939 + 0.75 NA intron (NM_001042681, intron 7 of 22) L1MEd|LINE|L1 -38887 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 242.5-3 chr1 187591834 187592217 + 0.75 NA Intergenic MER39B|LTR|ERV1 148397 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 200.5-15 chr12 9259841 9260162 + 0.75 NA intron (NR_137434, intron 6 of 6) MLT1D-int|LTR|ERVL-MaLR 19998 NR_137433 100499405 Hs.182314 NR_036466 ENSG00000237248 LINC00987 - long intergenic non-protein coding RNA 987 ncRNA 289.5-10 chr18 69190004 69190452 + 0.75 NA Intergenic L1ME3A|LINE|L1 -210660 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 157.5-87 chr6 12343347 12343730 + 0.75 NA Intergenic Intergenic 53177 NM_001168319 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 205-36 chr4 28603089 28603529 + 0.75 NA Intergenic Intergenic -216273 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 175.25-40 chr21 26192028 26192311 + 0.75 NA Intergenic AluJb|SINE|Alu -21041 NM_001136131 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 171.75-49 chr3 2916748 2917088 + 0.75 NA intron (NM_175607, intron 12 of 24) SVA_B|Retroposon|SVA 24703 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 167.5-56 chr3 70880529 70880866 + 0.75 NA Intergenic Intergenic 184227 NM_001244813 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 260.75-5 chr10 120197241 120197898 + 0.75 NA Intergenic AluJb|SINE|Alu 157654 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 293.25-11 chr8 8980547 8981017 + 0.75 NA Intergenic LTR78|LTR|ERV1 -22115 NM_001354636 90459 Hs.20000 NM_153332 ENSG00000104626 ERI1 3'HEXO|HEXO|THEX1 exoribonuclease 1 protein-coding 181-27 chr20 41282759 41283046 + 0.75 NA intron (NM_015035, intron 1 of 3) intron (NM_015035, intron 1 of 3) 17218 NM_015035 23051 Hs.380133 NM_015035 ENSG00000174306 ZHX3 TIX1 zinc fingers and homeoboxes 3 protein-coding 289.25-5 chr18 11853069 11853715 + 0.75 NA 3' UTR (NM_020412, exon 1 of 1) 3' UTR (NM_020412, exon 1 of 1) 1979 NM_020412 57132 Hs.656244 NM_020412 ENSG00000255112 CHMP1B C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2 charged multivesicular body protein 1B protein-coding 230.75-2 chr1 90455576 90456065 + 0.75 NA Intergenic Intergenic -201930 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 183.75-98 chr8 135129261 135129839 + 0.75 NA Intergenic L1ME3A|LINE|L1 -104581 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 177-48 chr4 127509601 127509954 + 0.75 NA Intergenic L1MDa|LINE|L1 -123180 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 206.5-9 chr11 90896996 90897434 + 0.75 NA intron (NR_104190, intron 6 of 6) L2a|LINE|L2 -28013 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 177.75-16 chr14 59115760 59116319 + 0.75 NA Intergenic L1MC1|LINE|L1 -72628 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 202.25-41 chr3 100790342 100790818 + 0.75 NA intron (NM_001349331, intron 31 of 42) intron (NM_001349331, intron 31 of 42) 81038 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 226.75-6 chr12 103352624 103353067 + 0.75 NA intron (NM_001099336, intron 4 of 5) MIR|SINE|MIR 143123 NM_001278420 374470 Hs.534649 NM_198521 ENSG00000179088 C12orf42 - chromosome 12 open reading frame 42 protein-coding 263-12 chr7 1728947 1729558 + 0.75 NA intron (NM_001128636, intron 2 of 2) intron (NM_001128636, intron 2 of 2) 13058 NR_120510 101927125 Hs.633957 NR_120508 ENSG00000236081 ELFN1-AS1 MYCLo-2 ELFN1 antisense RNA 1 ncRNA 204.25-15 chr16 7877592 7878023 + 0.75 NA Intergenic Intergenic 544962 NM_145892 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 175-8 chr10 113650312 113650819 + 0.75 NA intron (NM_001322945, intron 7 of 40) intron (NM_001322945, intron 7 of 40) 13476 NM_198060 4892 Hs.268788 NM_006175 ENSG00000197893 NRAP N-RAP nebulin related anchoring protein protein-coding 190-7 chr10 56467257 56467952 + 0.75 NA Intergenic L1P4e|LINE|L1 -106331 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 240.5-7 chr13 64150010 64150522 + 0.75 NA Intergenic L1MA7|LINE|L1 -74255 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 318-3 chr5 58473749 58474453 + 0.75 NA Intergenic (TTT)n|Simple_repeat|Simple_repeat -13962 NM_001252226 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 192-10 chr10 39118317 39118659 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 421892 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 190-52 chr5 87735634 87736272 + 0.75 NA Intergenic Intergenic 73911 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 188.5-18 chr13 96434653 96434953 + 0.75 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 7574 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 181.75-25 chr14 56336050 56336519 + 0.75 NA Intergenic Intergenic -178047 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 185-49 chr3 140879212 140879631 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL -62415 NM_001104647 55186 Hs.144130 NM_018155 ENSG00000114120 SLC25A36 PNC2 solute carrier family 25 member 36 protein-coding 169.25-48 chr5 65284511 65284955 + 0.75 NA intron (NM_197941, intron 11 of 24) intron (NM_197941, intron 11 of 24) 197187 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 159-66 chr5 121690088 121690467 + 0.75 NA Intergenic Intergenic -161605 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 393.25-3 chr2 186516518 186517149 + 0.75 NA Intergenic Intergenic 30573 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 246.25-29 chr4 90346732 90347271 + 0.75 NA intron (NM_207491, intron 3 of 7) intron (NM_207491, intron 3 of 7) 111970 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 168-38 chr2 171093391 171093858 + 0.75 NA intron (NM_012290, intron 2 of 20) intron (NM_012290, intron 2 of 20) -26651 NM_001136555 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 201.25-16 chr16 75657241 75657568 + 0.75 NA TTS (NM_018975) TTS (NM_018975) 9631 NM_018975 54386 Hs.301419 NM_018975 ENSG00000166848 TERF2IP DRIP5|RAP1 TERF2 interacting protein protein-coding 202.5-4 chr1 119078450 119078757 + 0.75 NA intron (NM_015836, intron 1 of 5) L1M5|LINE|L1 31198 NR_126447 104472716 Hs.689536 NR_126447 WARS2-IT1 - WARS2 intronic transcript 1 ncRNA 297.25-10 chr7 80313516 80314271 + 0.75 NA Intergenic Intergenic 60546 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 183.5-31 chr2 112232227 112232659 + 0.75 NA intron (NM_032494, intron 6 of 8) intron (NM_032494, intron 6 of 8) 22599 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 240.75-18 chr5 35548616 35549271 + 0.75 NA Intergenic Intergenic -68920 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 220.75-38 chr6 118997679 118998276 + 0.75 NA intron (NM_024581, intron 9 of 17) intron (NM_024581, intron 9 of 17) -62815 NM_153255 254394 Hs.279008 NM_017696 ENSG00000111877 MCM9 C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3 minichromosome maintenance 9 homologous recombination repair factor protein-coding 210-20 chr18 56731795 56732236 + 0.75 NA intron (NM_015285, intron 14 of 27) intron (NM_015285, intron 14 of 27) 80630 NM_015285 23335 Hs.465213 NM_015285 ENSG00000091157 WDR7 TRAG WD repeat domain 7 protein-coding 194.5-61 chr8 135492537 135492875 + 0.75 NA intron (NM_006558, intron 1 of 8) L1MCc|LINE|L1 35250 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 230.5-33 chr7 49168440 49169003 + 0.75 NA Intergenic Intergenic 244174 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 157.75-46 chr18 65792787 65793034 + 0.75 NA intron (NM_001362438, intron 2 of 11) intron (NM_001362438, intron 2 of 11) 41898 NM_004361 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 186.5-71 chr8 78261092 78261542 + 0.75 NA Intergenic Intergenic -255023 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 196.5-45 chr5 124133699 124134052 + 0.75 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 304645 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 229.75-35 chr8 28612664 28613138 + 0.75 NA Intergenic AluJb|SINE|Alu 88563 NR_126027 101929402 Hs.667366 NR_126027 ENSG00000246339 EXTL3-AS1 C8orf50 EXTL3 antisense RNA 1 ncRNA 220.5-8 chr12 98118986 98119377 + 0.75 NA Intergenic Intergenic -123733 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 221-16 chr2 102438116 102438814 + 0.75 NA intron (NM_003853, intron 6 of 11) (ATTAT)n|Simple_repeat|Simple_repeat 6176 NR_039930 100616157 NR_039930 ENSG00000264764 MIR4772 mir-4772 microRNA 4772 ncRNA 208-37 chr8 87692336 87692721 + 0.75 NA Intergenic Intergenic 181487 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 248.75 chr1 117462045 117462457 + 0.75 NA intron (NM_006699, intron 7 of 12) L1ME3G|LINE|L1 94802 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 164.25-32 chr15 99290566 99290819 + 0.75 NA intron (NM_001321677, intron 5 of 8) AluJr|SINE|Alu 33167 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 202-13 chr14 60082895 60083349 + 0.75 NA Intergenic Intergenic -8789 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 307-2 chr12 85824736 85825338 + 0.75 NA intron (NM_005447, intron 1 of 1) AluSc|SINE|Alu 11372 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 283.75-6 chr20 56179449 56180098 + 0.75 NA Intergenic AluYc|SINE|Alu -68959 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 147.25-12 chr1 197814448 197814774 + 0.75 NA Intergenic Intergenic -39131 NM_144977 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 184.25-21 chr14 50129768 50130124 + 0.75 NA intron (NM_006939, intron 21 of 22) intron (NM_006939, intron 21 of 22) -13374 NR_049739 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 153.25-34 chr14 47551894 47552222 + 0.75 NA intron (NM_001113498, intron 1 of 16) L2a|LINE|L2 122896 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 194.75-16 chr17 79985704 79986188 + 0.75 NA intron (NM_019020, intron 3 of 11) intron (NM_019020, intron 3 of 11) -35093 NM_001271845 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 201.25-22 chr2 56919117 56919591 + 0.75 NA Intergenic Intergenic -733584 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 173.5-69 chr5 130166490 130166923 + 0.75 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 262241 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 215.75-18 chr2 58746318 58746714 + 0.75 NA intron (NR_033873, intron 2 of 13) L2|LINE|L2 225763 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 247.75-19 chr4 33395730 33396109 + 0.75 NA Intergenic L1MA3|LINE|L1 643974 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 151.5-28 chr15 25424608 25424871 + 0.75 NA intron (NM_001354507, intron 1 of 14) L1MB7|LINE|L1 13490 NM_001354526 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 222.75-16 chr18 50721638 50722132 + 0.75 NA intron (NM_001292040, intron 3 of 3) intron (NM_001292040, intron 3 of 3) 98131 NM_001127175 83876 Hs.30495 NM_031939 ENSG00000134042 MRO B29|C18orf3 maestro protein-coding 238.75-3 chr1 85201203 85201726 + 0.75 NA promoter-TSS (NM_032184) promoter-TSS (NM_032184) -448 NM_032184 84144 Hs.533853 NM_032184 ENSG00000097096 SYDE2 - synapse defective Rho GTPase homolog 2 protein-coding 199.5-10 chr14 19922868 19923335 + 0.75 NA Intergenic L1M5|LINE|L1 2494 NM_001005483 79317 Hs.554585 NM_001005483 ENSG00000176281 OR4K5 OR14-16 olfactory receptor family 4 subfamily K member 5 protein-coding 147.25-3 chr1 73449257 73449617 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR 143267 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 262.75 chr1 107645556 107646056 + 0.75 NA intron (NM_006113, intron 19 of 26) intron (NM_006113, intron 19 of 26) 42693 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 216.25-8 chr11 83049536 83049901 + 0.75 NA intron (NM_014488, intron 1 of 5) intron (NM_014488, intron 1 of 5) -8120 NR_033347 100379250 Hs.725115 NR_033347 ENSG00000207221 SNORA70E U70E small nucleolar RNA, H/ACA box 70E snoRNA 313.75-7 chr2 16868894 16869607 + 0.75 NA Intergenic L1ME3E|LINE|L1 -203416 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 175.5-56 chr3 36504601 36504937 + 0.75 NA intron (NM_001292049, intron 5 of 8) intron (NM_001292049, intron 5 of 8) 124282 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 193.75-57 chr7 137578103 137578499 + 0.75 NA exon (NM_001321709, exon 17 of 34) exon (NM_001321709, exon 17 of 34) -234568 NM_001321387 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 276.25 chr1 167501225 167501804 + 0.75 NA intron (NM_000734, intron 1 of 7) intron (NM_000734, intron 1 of 7) 17015 NM_000734 919 Hs.156445 NM_000734 ENSG00000198821 CD247 CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ CD247 molecule protein-coding 232.75-29 chr6 47002351 47002706 + 0.75 NA intron (NM_153840, intron 13 of 14) L4_B_Mam|LINE|RTE-X 39804 NM_025048 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 222.75-12 chr15 23918797 23919156 + 0.75 NA Intergenic L1MCa|LINE|L1 -56171 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 274-4 chr11 84608877 84609366 + 0.75 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 111821 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 189-54 chr6 75023815 75024241 + 0.75 NA Intergenic Intergenic 104754 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 158.25-102 chr7 37363228 37363541 + 0.75 NA intron (NM_001206480, intron 1 of 21) L2|LINE|L2 -9716 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 164.25-87 chr8 109363421 109363660 + 0.75 NA intron (NM_177531, intron 1 of 77) L3b|LINE|CR1 1079 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 371-2 chr7 85557447 85558371 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR 136787 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 314.75 chr10 33449964 33450534 + 0.75 NA Intergenic Intergenic -115344 NR_045259 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 146.25-4 chr1 74903503 74903732 + 0.75 NA Intergenic Intergenic -170209 NM_001130043 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 148.25-14 chr10 129435632 129435861 + 0.75 NA Intergenic MLT2A2|LTR|ERVL -31495 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 239.5-21 chr20 12727557 12728058 + 0.75 NA Intergenic Intergenic 209156 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 154.75-38 chr2 32930008 32930257 + 0.75 NA TTS (NR_027098) TTS (NR_027098) 3005 NR_027097 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 168.5-11 chr10 58047248 58047585 + 0.75 NA Intergenic MLT1G3-int|LTR|ERVL-MaLR 220478 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 164.5-43 chr2 239222724 239222983 + 0.75 NA intron (NM_006037, intron 3 of 26) intron (NM_006037, intron 3 of 26) -27396 NR_026664 85009 Hs.744565 NM_032923 MGC16025 - uncharacterized LOC85009 ncRNA 153.5-72 chr4 55871145 55871405 + 0.75 NA intron (NM_001024924, intron 7 of 18) intron (NM_001024924, intron 7 of 18) 17625 NM_018261 55763 Hs.269665 NM_018261 ENSG00000090989 EXOC1 BM-102|SEC3|SEC3L1|SEC3P exocyst complex component 1 protein-coding 164.75-41 chr2 78959516 78959813 + 0.75 NA Intergenic Intergenic -66038 NM_001008387 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 157-54 chr20 42585143 42585435 + 0.75 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -100194 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 173.75-17 chr12 1211597 1211830 + 0.75 NA intron (NR_027948, intron 12 of 19) AluSq2|SINE|Alu 183965 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 155-82 chr5 128315075 128315344 + 0.75 NA intron (NM_001999, intron 36 of 64) Looper|DNA|PiggyBac 223036 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 322.5-10 chr3 408588 409090 + 0.75 NA 3' UTR (NM_006614, exon 28 of 28) 3' UTR (NM_006614, exon 28 of 28) -23044 NR_110739 101927193 Hs.677744 NR_110739 ENSG00000234661 CHL1-AS1 - CHL1 antisense RNA 1 ncRNA 250-16 chr8 141256124 141256639 + 0.75 NA intron (NR_161376, intron 1 of 1) intron (NR_161376, intron 1 of 1) -1752 NM_001286646 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45 member 4 protein-coding 147.75-72 chr3 176543505 176543792 + 0.75 NA Intergenic Intergenic 28545 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 157.75-18 chr10 69802818 69803068 + 0.75 NA intron (NM_080801, intron 1 of 38) CpG 1037 NM_001368897 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 236.25-14 chr17 11585359 11585778 + 0.75 NA Intergenic MER5B|DNA|hAT-Charlie -12902 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 255.25-15 chr20 52487514 52488285 + 0.75 NA Intergenic Intergenic -132939 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 216.75-21 chr21 16579879 16580344 + 0.75 NA intron (NR_136547, intron 2 of 2) intron (NR_136547, intron 2 of 2) -8487 NR_136549 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 161.25-46 chr3 115170648 115170917 + 0.75 NA Intergenic L1MB8|LINE|L1 -23494 NM_001348800 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 193-38 chr4 90869604 90869936 + 0.75 NA intron (NM_001145065, intron 8 of 10) L1MA2|LINE|L1 634739 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 189.75-77 chr8 62391649 62392158 + 0.75 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 143049 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 253-5 chr2 9882832 9883283 + 0.75 NA intron (NM_001318977, intron 7 of 13) intron (NM_001318977, intron 7 of 13) 39583 NM_005680 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 146-17 chr13 85941241 85941560 + 0.75 NA Intergenic L1ME2|LINE|L1 -141981 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 160-20 chr14 63779941 63780210 + 0.75 NA Intergenic L1M4|LINE|L1 -52010 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 159-62 chr4 70315510 70315762 + 0.75 NA Intergenic Intergenic -19345 NM_033122 85438 Hs.120316 NM_033122 ENSG00000145309 CABS1 C4orf35|CLPH|NYD-SP26 calcium binding protein, spermatid associated 1 protein-coding 236.75-23 chr5 23747853 23748454 + 0.75 NA Intergenic Intergenic -203195 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 285.5-3 chr1 105234979 105235520 + 0.75 NA Intergenic Intergenic 383686 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 219.25-26 chr2 195390439 195390762 + 0.75 NA Intergenic L1ME3C|LINE|L1 -266358 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 151.75-98 chr7 21449439 21449809 + 0.75 NA intron (NM_003112, intron 3 of 5) intron (NM_003112, intron 3 of 5) -21434 NR_031594 100302122 NR_031594 ENSG00000221783 MIR1183 MIRN1183|hsa-mir-1183 microRNA 1183 ncRNA 173.25-80 chr9 88992316 88992564 + 0.75 NA 3' UTR (NM_001142413, exon 3 of 3) 3' UTR (NM_001142413, exon 3 of 3) 972 NM_005226 1903 Hs.585118 NM_005226 ENSG00000213694 S1PR3 EDG-3|EDG3|LPB3|S1P3 sphingosine-1-phosphate receptor 3 protein-coding 226.75-7 chr13 78509702 78510234 + 0.75 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) -86154 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 189.5-52 chr5 63356594 63356983 + 0.75 NA Intergenic MADE1|DNA|TcMar-Mariner 605504 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 151-42 chr2 99210226 99210641 + 0.75 NA Intergenic L1MA3|LINE|L1 29249 NR_028356 51263 Hs.346736 NM_016503 ENSG00000185414 MRPL30 L28MT|L30MT|MRP-L28|MRP-L30|MRPL28|MRPL28M|RPML28 mitochondrial ribosomal protein L30 protein-coding 184.75-65 chr6 1061387 1061780 + 0.75 NA intron (NR_027116, intron 1 of 3) L1MC4|LINE|L1 39749 NR_027115 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 178-2 chr1 97711131 97711541 + 0.75 NA intron (NM_000110, intron 5 of 22) MER47A|DNA|TcMar-Tigger -85585 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 210-57 chr8 140408569 140408903 + 0.75 NA intron (NM_001321646, intron 4 of 21) L1MC4|LINE|L1 49008 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 167-3 chr1 96672552 96672899 + 0.75 NA Intergenic L1MA3|LINE|L1 -48880 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 223.25-2 chr1 222701295 222701739 + 0.75 NA intron (NM_022831, intron 2 of 9) intron (NM_022831, intron 2 of 9) 10974 NM_022831 64853 Hs.156625 NM_022831 ENSG00000186063 AIDA C1orf80 axin interactor, dorsalization associated protein-coding 244.25-20 chr7 19571639 19572228 + 0.75 NA Intergenic Intergenic 133503 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 187.25-8 chr10 16688157 16688709 + 0.75 NA intron (NM_152724, intron 7 of 7) AluYm1|SINE|Alu 128991 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 188-15 chr11 88294912 88295319 + 0.75 NA intron (NM_001814, intron 6 of 6) L2b|LINE|L2 42621 NM_001814 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 159.25-60 chr4 164177263 164177602 + 0.75 NA intron (NM_001166373, intron 1 of 7) intron (NM_001166373, intron 1 of 7) 20279 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 220-17 chr3 162415771 162416315 + 0.75 NA Intergenic Intergenic 887258 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 230.5-4 chr1 232698330 232698673 + 0.75 NA Intergenic AluY|SINE|Alu -19570 NR_146922 105373199 Hs.254475 NR_146922 ENSG00000225919 LINC01745 - long intergenic non-protein coding RNA 1745 ncRNA 280.75 chr1 85994287 85994749 + 0.75 NA intron (NM_152890, intron 19 of 59) intron (NM_152890, intron 19 of 59) 161953 NR_146344 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 199-17 chr2 117196052 117196379 + 0.75 NA Intergenic Intergenic -618476 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 341.75-3 chr7 3277367 3278247 + 0.75 NA Intergenic L1PA16|LINE|L1 -23445 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 158.25-114 chr8 124207489 124207862 + 0.75 NA intron (NR_125420, intron 2 of 2) ERVL-E-int|LTR|ERVL -36153 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 288.25-3 chr11 79746333 79747001 + 0.75 NA Intergenic MER20|DNA|hAT-Charlie -305637 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 210.75-28 chr21 14705394 14705748 + 0.75 NA Intergenic L2c|LINE|L2 -62464 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 264-7 chr2 190216634 190217105 + 0.75 NA intron (NM_198047, intron 11 of 12) intron (NM_198047, intron 11 of 12) 36006 NM_032321 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 184.75-26 chr14 35681062 35681530 + 0.75 NA intron (NM_014990, intron 20 of 40) intron (NM_014990, intron 20 of 40) 81635 NR_135620 107399303 Hs.742611 NR_135620 SNORA101B ZL4 small nucleolar RNA, H/ACA box 101B snoRNA 166.25-60 chr7 9053032 9053370 + 0.75 NA Intergenic L1PB4|LINE|L1 -581069 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 265.5-2 chr10 26759039 26759734 + 0.75 NA intron (NM_001012752, intron 6 of 9) intron (NM_001012752, intron 6 of 9) 61685 NM_014317 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 332.5-2 chr4 175788892 175789530 + 0.75 NA intron (NM_201592, intron 1 of 6) intron (NM_201592, intron 1 of 6) -1096 NR_125901 101928590 Hs.599383 NR_125901 ENSG00000249106 LOC101928590 - uncharacterized LOC101928590 ncRNA 208.25 chr1 52724164 52724685 + 0.75 NA Intergenic AluJo|SINE|Alu -2029 NM_024646 79699 Hs.476280 NM_024646 ENSG00000162378 ZYG11B ZYG11 zyg-11 family member B, cell cycle regulator protein-coding 192.75-15 chr12 99872204 99872591 + 0.75 NA intron (NM_152788, intron 1 of 25) L1ME3A|LINE|L1 112257 NM_001352187 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 186.75-19 chr11 133407902 133408333 + 0.75 NA intron (NM_001012393, intron 1 of 7) MER6|DNA|TcMar-Tigger 124384 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 195.25-3 chr11 93296578 93296934 + 0.75 NA Intergenic Intergenic -33961 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 168.5-50 chr2 65219232 65219480 + 0.75 NA Intergenic L1MB7|LINE|L1 -8339 NM_005722 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 228.5-5 chr1 171008597 171009352 + 0.75 NA intron (NM_001163629, intron 15 of 21) (AT)n|Simple_repeat|Simple_repeat 73440 NM_025063 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 263.25-17 chr4 102782009 102782463 + 0.75 NA intron (NR_125932, intron 4 of 4) LTR40a|LTR|ERVL 5199 NR_125932 102723704 Hs.638374 NR_125932 LOC102723704 - uncharacterized LOC102723704 ncRNA 250.75-31 chr9 23401033 23401461 + 0.75 NA Intergenic L1MA9|LINE|L1 271152 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 286.25-10 chr6 116324211 116324724 + 0.75 NA intron (NR_136524, intron 1 of 4) MIRb|SINE|MIR -44350 NM_003309 7259 Hs.458358 NM_003309 ENSG00000189241 TSPYL1 TSPYL TSPY like 1 protein-coding 185.75-65 chr5 113332519 113332945 + 0.75 NA intron (NM_001085377, intron 3 of 18) LTR37B|LTR|ERV1 -37794 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 162-47 chr3 111052384 111052729 + 0.75 NA non-coding (NR_045114, exon 3 of 4) non-coding (NR_045114, exon 3 of 4) 17403 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 161-12 chr10 53459366 53459819 + 0.75 NA Intergenic L1MD2|LINE|L1 -687892 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 222.25-3 chr1 153075891 153076382 + 0.75 NA Intergenic Intergenic -4525 NM_001017418 6701 Hs.568239 NM_001017418 ENSG00000196805 SPRR2B - small proline rich protein 2B protein-coding 254.5-13 chr16 52064868 52065580 + 0.75 NA intron (NM_001242473, intron 1 of 5) L1MC2|LINE|L1 8711 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 168.75-75 chr4 85060811 85061075 + 0.75 NA Intergenic Intergenic 93459 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 175.75-63 chr6 142076452 142076860 + 0.75 NA intron (NM_001324308, intron 2 of 2) intron (NM_001324308, intron 2 of 2) 12143 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 191.25-10 chr10 11556113 11556441 + 0.75 NA intron (NM_014688, intron 2 of 14) L1MEg|LINE|L1 -23997 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 208-38 chr8 126888004 126888692 + 0.75 NA Intergenic Intergenic -124806 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 232.5-15 chr14 49401636 49402031 + 0.75 NA Intergenic MER33|DNA|hAT-Charlie 184547 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 203.5-34 chr21 23944413 23944845 + 0.75 NA Intergenic A-rich|Low_complexity|Low_complexity 376748 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 151.5 chr1 49605714 49605953 + 0.75 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) -133748 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 203.75-27 chr4 38388860 38389337 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR 22184 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 154.25-40 chr17 61817548 61817825 + 0.75 NA intron (NM_032043, intron 6 of 19) MER3|DNA|hAT-Charlie 45873 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 148.75-30 chr14 70676095 70676345 + 0.75 NA TTS (NM_015351) TTS (NM_015351) -22478 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 353.75-5 chr2 224556910 224557736 + 0.75 NA intron (NM_001257197, intron 1 of 14) intron (NM_001257197, intron 1 of 14) 12632 NM_001257198 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 349.5 chr2 75830201 75831038 + 0.75 NA Intergenic L2c|LINE|L2 -119704 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 224-3 chr1 95412287 95412815 + 0.75 NA Intergenic Helitron1Na_Mam|RC|Helitron -60444 NR_146486 101928169 NR_146486 LINC01650 - long intergenic non-protein coding RNA 1650 ncRNA 180.25-62 chr6 77437893 77438325 + 0.75 NA Intergenic L1MC4a|LINE|L1 25913 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 196.75-51 chr6 149755413 149755932 + 0.75 NA intron (NM_001252051, intron 1 of 6) intron (NM_001252051, intron 1 of 6) 5931 NM_001360452 5110 Hs.279257 NM_005389 ENSG00000120265 PCMT1 PIMT protein-L-isoaspartate (D-aspartate) O-methyltransferase protein-coding 317.25-4 chr2 28850814 28851417 + 0.75 NA TTS (NM_001142634) TTS (NM_001142634) 19194 NM_017910 55006 Hs.468026 NM_017910 ENSG00000171103 TRMT61B - tRNA methyltransferase 61B protein-coding 283.5-3 chr15 70960496 70960916 + 0.75 NA intron (NM_017691, intron 8 of 15) L1MC3|LINE|L1 68263 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 186-22 chr2 95152027 95152376 + 0.75 NA intron (NM_001318005, intron 4 of 4) intron (NM_001318005, intron 4 of 4) 7384 NM_001318005 84874 Hs.355664 NM_032788 ENSG00000144026 ZNF514 - zinc finger protein 514 protein-coding 322.5-4 chr14 70752134 70752741 + 0.75 NA intron (NM_033141, intron 3 of 12) intron (NM_033141, intron 3 of 12) 31015 NM_001284231 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 146-102 chr9 31647049 31647380 + 0.75 NA Intergenic L1ME3|LINE|L1 -265724 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 158.25-113 chr8 102334191 102334474 + 0.75 NA intron (NM_001282873, intron 9 of 58) AluSz|SINE|Alu 78357 NM_001282873 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 202.25-45 chr4 142905310 142905722 + 0.75 NA Intergenic L1MA4|LINE|L1 -58981 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 156.75-12 chr10 53880815 53881229 + 0.75 NA intron (NM_001354411, intron 27 of 34) (AT)n|Simple_repeat|Simple_repeat -605208 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 213.75-26 chr5 50787969 50788517 + 0.75 NA intron (NM_024615, intron 9 of 25) (TAATGTA)n|Simple_repeat|Simple_repeat 120829 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 249-17 chr8 106725858 106726368 + 0.75 NA promoter-TSS (NM_001198535) promoter-TSS (NM_001198535) 6 NM_001198534 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 231.75-14 chr2 135852022 135852416 + 0.75 NA intron (NM_005915, intron 12 of 16) intron (NM_005915, intron 12 of 16) -15035 NM_002299 3938 Hs.551506 NM_002299 ENSG00000115850 LCT LAC|LPH|LPH1 lactase protein-coding 207.5-9 chr11 68130378 68130871 + 0.75 NA Intergenic LTR38-int|LTR|ERV1 -9233 NM_212469 1119 Hs.77221 NM_001277 ENSG00000110721 CHKA CHK|CK|CKI|EK choline kinase alpha protein-coding 183.25-82 chr9 125833119 125833523 + 0.75 NA intron (NR_024122, intron 2 of 7) AluJb|SINE|Alu 85138 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding 294.25-15 chr7 82825908 82826332 + 0.75 NA intron (NM_033026, intron 18 of 24) intron (NM_033026, intron 18 of 24) 336764 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 237.5-9 chr17 19277638 19278139 + 0.75 NA intron (NM_001102664, intron 1 of 7) AluY|SINE|Alu 6495 NR_046824 100874309 Hs.733657 NR_046824 EPN2-IT1 - EPN2 intronic transcript 1 ncRNA 192.5-9 chr12 84536195 84536455 + 0.75 NA Intergenic Intergenic 376474 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 239.75 chr1 102194113 102194527 + 0.75 NA Intergenic Intergenic -197086 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 161-93 chr9 117909404 117909766 + 0.75 NA Intergenic L1PB1|LINE|L1 205182 NM_003266 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 400.5-4 chr8 95023539 95024252 + 0.75 NA intron (NM_001354522, intron 3 of 11) AluSc|SINE|Alu -1080 NM_001354533 137682 Hs.435500 NM_152416 ENSG00000156170 NDUFAF6 C8orf38|MC1DN17 NADH:ubiquinone oxidoreductase complex assembly factor 6 protein-coding 210.25-16 chr18 45945006 45945412 + 0.75 NA intron (NM_020964, intron 7 of 43) intron (NM_020964, intron 7 of 43) 22120 NM_020964 57724 Hs.514843 NM_020964 ENSG00000152223 EPG5 HEEW1|KIAA1632|VICIS ectopic P-granules autophagy protein 5 homolog protein-coding 163.75-40 chr3 83401623 83402023 + 0.75 NA Intergenic Intergenic 1415681 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 178.25-32 chr2 207894135 207894407 + 0.75 NA intron (NM_001080475, intron 6 of 7) intron (NM_001080475, intron 6 of 7) -124365 NM_003468 7855 Hs.17631 NM_003468 ENSG00000163251 FZD5 C2orf31|HFZ5 frizzled class receptor 5 protein-coding 176.25-63 chr8 78119960 78120317 + 0.75 NA Intergenic Intergenic -396202 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 167.25-84 chr9 35654374 35654810 + 0.75 NA Intergenic Intergenic 3426 NR_003051 6023 Hs.587502 NR_003051 ENSG00000269900 RMRP CHH|NME1|RMRPR|RRP2 RNA component of mitochondrial RNA processing endoribonuclease ncRNA 183.5-40 chr21 25857689 25858092 + 0.75 NA Intergenic Intergenic -122236 NM_001320266 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 159.5-40 chr2 35506890 35507231 + 0.75 NA Intergenic Intergenic 35655 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 206-4 chr1 114841863 114842188 + 0.75 NA Intergenic MER92B|LTR|ERV1 -12778 NM_001282541 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 172-29 chr16 72275899 72276262 + 0.75 NA Intergenic Intergenic -103630 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 173-39 chr2 225932983 225933407 + 0.75 NA Intergenic Intergenic -209599 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 201.5-16 chr16 12936086 12936501 + 0.75 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 34695 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 166.25-34 chr2 114492278 114492638 + 0.75 NA intron (NM_001321908, intron 2 of 25) A-rich|Low_complexity|Low_complexity 30881 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 219.5-13 chr2 37439523 37439920 + 0.75 NA Intergenic L1ME1|LINE|L1 95091 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 157.25-97 chr8 64876771 64877075 + 0.75 NA Intergenic L1ME1|LINE|L1 -78186 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 171-7 chr1 221734836 221735297 + 0.75 NA intron (NR_111940, intron 1 of 2) intron (NR_111940, intron 1 of 2) 1834 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 220.75-22 chr21 40362233 40362600 + 0.75 NA intron (NR_073202, intron 4 of 32) L1MC5a|LINE|L1 -20667 NR_038900 100506492 Hs.667053 NR_038896 ENSG00000235123 DSCAM-AS1 M41 DSCAM antisense RNA 1 ncRNA 256.25 chr1 227344332 227344836 + 0.75 NA Intergenic MIR3|SINE|MIR -26092 NM_001366019 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 192.25-21 chr14 46267223 46267565 + 0.75 NA intron (NR_102702, intron 3 of 3) L1PA7|LINE|L1 203235 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 179-17 chr17 12109465 12109736 + 0.75 NA intron (NM_001281435, intron 6 of 11) intron (NM_001281435, intron 6 of 11) 27701 NR_030613 100126313 NR_030613 ENSG00000266297 MIR744 MIRN744|hsa-mir-744|mir-744 microRNA 744 ncRNA 150.25-7 chr1 154220685 154221187 + 0.75 NA promoter-TSS (NM_001297717) promoter-TSS (NM_001297717) -19 NM_014847 9898 Hs.490551 NM_014847 ENSG00000143569 UBAP2L NICE-4|NICE4 ubiquitin associated protein 2 like protein-coding 192.75-48 chr4 108539086 108539539 + 0.75 NA non-coding (NR_026968, exon 4 of 4) non-coding (NR_026968, exon 4 of 4) -17921 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 224-21 chr3 80682729 80683157 + 0.75 NA Intergenic Intergenic -81954 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 160-12 chr11 26598173 26598514 + 0.75 NA intron (NM_031418, intron 14 of 26) intron (NM_031418, intron 14 of 26) -26080 NM_001135092 143662 Hs.407152 NM_145650 ENSG00000169550 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 220.75-37 chr6 99040389 99040850 + 0.75 NA Intergenic Intergenic -83990 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 212.75-11 chr16 81558087 81558517 + 0.75 NA intron (NM_030629, intron 1 of 20) L1M3|LINE|L1 24400 NR_107008 102465840 NR_107008 ENSG00000277255 MIR7854 hsa-mir-7854 microRNA 7854 ncRNA 190.75-10 chr10 21214746 21215029 + 0.75 NA Intergenic Intergenic 40585 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 230-3 chr12 60542509 60543074 + 0.75 NA Intergenic L1MC3|LINE|L1 853421 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 288.5-6 chr2 153316865 153317333 + 0.75 NA Intergenic Intergenic 161663 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 150.5-63 chr2 108855713 108856004 + 0.75 NA intron (NM_001351549, intron 12 of 13) intron (NM_001351549, intron 12 of 13) 69087 NM_144978 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 223.25-30 chr6 101764832 101765245 + 0.75 NA intron (NM_001166247, intron 6 of 16) L2c|LINE|L2 366053 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 194.25-27 chr3 117097419 117097889 + 0.75 NA Intergenic L1M5|LINE|L1 176223 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 282.75-10 chr5 162639645 162640074 + 0.75 NA Intergenic L1MA1|LINE|L1 572217 NM_000816 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 209-45 chr8 117252044 117252589 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 117321 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 176.5-30 chr18 2031175 2031530 + 0.75 NA Intergenic Intergenic 540153 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 170.75-19 chr14 24800284 24800630 + 0.75 NA Intergenic MER102c|DNA|hAT-Charlie -166267 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 329.5-4 chr2 39116370 39116897 + 0.75 NA intron (NM_005633, intron 1 of 22) AluJb|SINE|Alu 3830 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 250.75-21 chr4 44094438 44094856 + 0.75 NA Intergenic L1ME3A|LINE|L1 77585 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 149.5-38 chr18 76191894 76192303 + 0.75 NA Intergenic L1MA9|LINE|L1 -17412 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 225.5-53 chr8 122549799 122550418 + 0.75 NA intron (NR_131202, intron 2 of 3) MIRb|SINE|MIR 18536 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 244.75-4 chr11 5385295 5385795 + 0.75 NA intron (NM_001005567, intron 1 of 4) intron (NM_001005567, intron 1 of 4) -3832 NM_001004756 390059 Hs.553731 NM_001004756 ENSG00000184698 OR51M1 HOR5'Beta7|OR11-40 olfactory receptor family 51 subfamily M member 1 protein-coding 197.5-40 chr3 16071908 16072328 + 0.75 NA Intergenic THE1D|LTR|ERVL-MaLR -102562 NM_001319051 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 271.25-20 chr8 114927906 114928422 + 0.75 NA Intergenic L1MDa|LINE|L1 739849 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 226.25-13 chr2 77183781 77184395 + 0.75 NA intron (NR_146416, intron 1 of 1) L1PA4|LINE|L1 198123 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 261.5-13 chr2 200659852 200660419 + 0.75 NA intron (NM_001159, intron 29 of 34) intron (NM_001159, intron 29 of 34) -35588 NR_135011 107161151 Hs.148269 NR_135011 AOX3P-AOX2P AOX3/AOX3L1 AOX3P-AOX2P readthrough, transcribed pseudogene pseudo 147.75-21 chr11 28587531 28587855 + 0.75 NA Intergenic L4_C_Mam|LINE|RTE-X -110145 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 322.25-3 chr18 2336037 2336817 + 0.75 NA Intergenic Intergenic 235078 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 292.75-6 chr4 58182804 58183334 + 0.75 NA Intergenic Intergenic 353259 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 177-55 chr6 39176288 39176641 + 0.75 NA Intergenic MER33|DNA|hAT-Charlie 53011 NM_003740 8645 Hs.444448 NM_003740 ENSG00000164626 KCNK5 K2p5.1|KCNK5b|TASK-2|TASK2 potassium two pore domain channel subfamily K member 5 protein-coding 199.25-16 chr14 66909257 66909636 + 0.75 NA intron (NM_001024218, intron 5 of 21) L1M4c|LINE|L1 -279994 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 170.75-8 chr11 109192951 109193286 + 0.75 NA Intergenic L1PA6|LINE|L1 -229072 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 200.75-45 chr6 89968055 89968410 + 0.75 NA intron (NM_021813, intron 6 of 8) intron (NM_021813, intron 6 of 8) 73763 NM_032602 84694 Hs.334499 NM_032602 ENSG00000135355 GJA10 CX62 gap junction protein alpha 10 protein-coding 201.25-35 chr3 161153671 161153985 + 0.75 NA Intergenic Intergenic -48456 NM_001349158 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 282.75-13 chr8 81578125 81578784 + 0.75 NA Intergenic Intergenic -47064 NM_001105281 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 167-37 chr19 18354546 18354890 + 0.75 NA intron (NR_138029, intron 3 of 5) AluJr|SINE|Alu 14120 NM_001329477 54858 Hs.131776 NM_017712 ENSG00000130517 PGPEP1 PAP-I|PGI|PGP|PGP-I|PGPI|Pcp pyroglutamyl-peptidase I protein-coding 198.75-46 chr7 13472059 13472595 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR 514187 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 168.5-90 chr6 162494828 162495139 + 0.75 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -232149 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 293.25-10 chr7 31278661 31279125 + 0.75 NA Intergenic L1MEd|LINE|L1 61833 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 217.5-27 chr2 222004287 222004851 + 0.75 NA Intergenic L1MC1|LINE|L1 -293578 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 159.5-28 chr16 35670167 35670488 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -76225 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 177.75-13 chr12 58765969 58766274 + 0.75 NA intron (NR_120452, intron 1 of 7) intron (NR_120452, intron 1 of 7) 15595 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 197.75-27 chr17 76548875 76549458 + 0.75 NA Intergenic L1ME2|LINE|L1 -8598 NR_038110 100507246 Hs.288215 NR_038108 ENSG00000163597 SNHG16 Nbla10727|Nbla12061|ncRAN small nucleolar RNA host gene 16 ncRNA 266.75-19 chr7 45955129 45955684 + 0.75 NA Intergenic L1M5|LINE|L1 -34134 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 170.25-56 chr4 139138880 139139230 + 0.75 NA intron (NM_001371339, intron 2 of 9) intron (NM_001371339, intron 2 of 9) 38163 NM_001371324 279.25 chr10 6356041 6356730 + 0.75 NA Intergenic L1MEd|LINE|L1 6069 NR_148966 399716 Hs.737229 NR_148966 LINC02656 - long intergenic non-protein coding RNA 2656 ncRNA 211.75-14 chr18 70602057 70602475 + 0.75 NA Intergenic L1MB3|LINE|L1 48688 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 214-31 chr6 106617803 106618311 + 0.75 NA intron (NM_032730, intron 4 of 8) intron (NM_032730, intron 4 of 8) 11441 NM_032730 84816 Hs.155839 NM_032730 ENSG00000130347 RTN4IP1 NIMP|OPA10 reticulon 4 interacting protein 1 protein-coding 240.5-21 chr5 42506194 42506638 + 0.75 NA intron (NM_001242401, intron 2 of 10) MIRc|SINE|MIR -41627 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 181.5-73 chr9 71453247 71453638 + 0.75 NA Intergenic Tigger13a|DNA|TcMar-Tigger -6471 NM_001366143 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 213-10 chr13 60542665 60543176 + 0.75 NA intron (NM_030794, intron 12 of 13) intron (NM_030794, intron 12 of 13) -130035 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 235.25-9 chr14 87306650 87307120 + 0.75 NA Intergenic L2c|LINE|L2 348409 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 172.5 chr1 10277264 10277529 + 0.75 NA intron (NM_001365953, intron 11 of 20) AluJr4|SINE|Alu -21570 NR_004394 26827 NR_004394 ENSG00000206625 RNU6-1 RNU6|RNU6A|U6|U6-1 RNA, U6 small nuclear 1 snRNA 256.75-10 chr14 19910052 19910665 + 0.75 NA Intergenic L1ME1|LINE|L1 -10249 NM_001005483 79317 Hs.554585 NM_001005483 ENSG00000176281 OR4K5 OR14-16 olfactory receptor family 4 subfamily K member 5 protein-coding 301 chr10 55212430 55212935 + 0.75 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -386360 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 184.25-31 chr2 67603803 67604135 + 0.75 NA Intergenic Intergenic 206636 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 173.25-78 chr9 867831 868333 + 0.75 NA intron (NM_001363767, intron 2 of 4) AluJb|SINE|Alu 24793 NM_001363767 1761 Hs.98586 NM_021951 ENSG00000137090 DMRT1 CT154|DMT1 doublesex and mab-3 related transcription factor 1 protein-coding 157.75-55 chr2 179563586 179563832 + 0.75 NA intron (NR_148056, intron 3 of 9) intron (NR_148056, intron 3 of 9) -1121 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 213.5-19 chr15 35824392 35824770 + 0.75 NA intron (NR_038251, intron 2 of 2) intron (NR_038251, intron 2 of 2) -102275 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 189.25-34 chr3 96847202 96847501 + 0.75 NA intron (NM_001080448, intron 1 of 17) intron (NM_001080448, intron 1 of 17) 32757 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 281.5-17 chr2 18036595 18037335 + 0.75 NA Intergenic L1MCc|LINE|L1 158298 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 153.5-19 chr11 73199589 73200072 + 0.75 NA Intergenic L1MB5|LINE|L1 -18451 NM_176072 5029 Hs.339 NM_002564 ENSG00000175591 P2RY2 HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R purinergic receptor P2Y2 protein-coding 201 chr1 27317143 27317619 + 0.75 NA Intergenic AluSx|SINE|Alu -4764 NM_032125 84065 Hs.469171 NM_032125 ENSG00000186501 TMEM222 C1orf160 transmembrane protein 222 protein-coding 156.75-48 chr2 50539376 50539893 + 0.75 NA intron (NM_001330093, intron 9 of 22) intron (NM_001330093, intron 9 of 22) 156628 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 195.75-49 chr4 46807117 46807529 + 0.75 NA intron (NM_130902, intron 2 of 2) L1MA9|LINE|L1 101922 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 156-27 chr15 58568226 58568587 + 0.75 NA intron (NM_000236, intron 8 of 8) L3|LINE|CR1 -69671 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 212-36 chr6 139710608 139710939 + 0.75 NA Intergenic Intergenic -60300 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 222-14 chr2 173331069 173331388 + 0.75 NA Intergenic L1MD1|LINE|L1 -23644 NM_031942 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 308.75-5 chr13 37344452 37345032 + 0.75 NA Intergenic Intergenic 140042 NR_125762 103695431 Hs.550637 NR_125762 ENSG00000230390 LINC01048 - long intergenic non-protein coding RNA 1048 ncRNA 149.5-79 chr6 50521869 50522266 + 0.75 NA Intergenic Intergenic -191477 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 287.25-14 chr8 113191596 113192286 + 0.75 NA intron (NM_001363185, intron 3 of 66) L1PA16|LINE|L1 185211 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 207.5-35 chr5 58987266 58987620 + 0.75 NA intron (NM_006203, intron 11 of 14) intron (NM_006203, intron 11 of 14) 12455 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 236-21 chr2 177710657 177711183 + 0.75 NA intron (NR_136171, intron 4 of 4) intron (NR_136171, intron 4 of 4) 37598 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 159.5-97 chr8 89750931 89751258 + 0.75 NA intron (NR_125822, intron 1 of 4) MLT1C|LTR|ERVL-MaLR 6617 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 208.5-41 chr3 80703201 80703653 + 0.75 NA Intergenic L1PB4|LINE|L1 -61470 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 214.25-13 chr17 70688814 70689254 + 0.75 NA Intergenic Intergenic 513145 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 156-52 chr3 40315744 40316066 + 0.75 NA Intergenic Intergenic 6198 NM_005875 10289 Hs.315230 NM_005875 ENSG00000114784 EIF1B GC20 eukaryotic translation initiation factor 1B protein-coding 160.75-61 chr2 61360341 61360732 + 0.75 NA intron (NM_014709, intron 10 of 79) L1MA9|LINE|L1 56841 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 226-13 chr2 35845431 35846080 + 0.75 NA Intergenic Intergenic 374350 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 175-16 chr2 52261768 52262083 + 0.75 NA intron (NR_135237, intron 7 of 10) L1MEg|LINE|L1 -108723 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 253.25-19 chr8 124363201 124363655 + 0.75 NA intron (NM_194291, intron 1 of 6) MER57A-int|LTR|ERV1 9271 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 168.75-103 chr8 112526668 112526998 + 0.75 NA intron (NM_001363185, intron 25 of 66) L1MEc|LINE|L1 -116660 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 201.75-6 chr10 43488319 43488686 + 0.75 NA Intergenic Intergenic 51391 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 153.25-92 chr5 32140746 32141080 + 0.75 NA intron (NM_022130, intron 2 of 3) AluSz6|SINE|Alu 33406 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 175-38 chr5 42838100 42838593 + 0.75 NA Intergenic Intergenic -26270 NM_001085486 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 155.5-62 chr3 74940783 74941056 + 0.75 NA Intergenic Intergenic -273557 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 152.5-96 chr6 80735166 80735385 + 0.75 NA Intergenic Intergenic 628604 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 175-48 chr6 139956808 139957101 + 0.75 NA Intergenic L1ME3|LINE|L1 -19365 NR_121622 100507477 Hs.179213 NR_121622 ENSG00000236013 LOC100507477 - uncharacterized LOC100507477 ncRNA 149.5-65 chr3 193562003 193562457 + 0.75 NA Intergenic (AAAC)n|Simple_repeat|Simple_repeat -7335 NM_032279 84239 Hs.674423 NM_032279 ENSG00000127249 ATP13A4 - ATPase 13A4 protein-coding 158.25-40 chr15 78951012 78951243 + 0.75 NA Intergenic Intergenic -6029 NM_001319137 1512 Hs.148641 NM_004390 ENSG00000103811 CTSH ACC-4|ACC-5|ACC4|ACC5|CPSB cathepsin H protein-coding 269.5-7 chr12 5158827 5159455 + 0.75 NA Intergenic Arthur1B|DNA|hAT-Tip100 84010 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 261 chr1 3909425 3909988 + 0.75 NA intron (NR_024455, intron 2 of 3) intron (NR_024455, intron 2 of 3) 9302 NR_024455 100133612 Hs.307652 NR_024455 ENSG00000236423 LINC01134 - long intergenic non-protein coding RNA 1134 ncRNA 174.25-64 chr7 77636747 77637196 + 0.75 NA intron (NM_001131009, intron 14 of 16) intron (NM_001131009, intron 14 of 16) 59294 NR_134251 100505854 Hs.72451 NR_038361 ENSG00000214293 APTR RSBN1L-AS1 Alu-mediated CDKN1A/p21 transcriptional regulator ncRNA 212-15 chr15 95271443 95271958 + 0.75 NA Intergenic Intergenic 55400 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 159.25-22 chr14 69958433 69958689 + 0.75 NA intron (NM_001034852, intron 3 of 11) L1M5|LINE|L1 -19572 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 172.5-10 chr11 29539183 29539535 + 0.75 NA Intergenic Intergenic -55054 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 238.25-13 chr18 2642476 2642874 + 0.75 NA Intergenic AluSz|SINE|Alu 12720 NR_033754 645158 Hs.712861 NR_033754 ENSG00000266405 CBX3P2 - chromobox 3 pseudogene 2 pseudo 155.25-54 chr22 47233005 47233274 + 0.75 NA Intergenic LTR28C|LTR|ERV1 -112432 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 164.5-66 chr5 39893814 39894283 + 0.75 NA Intergenic Intergenic -158243 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 147.25-99 chr8 111149922 111150192 + 0.75 NA intron (NR_125418, intron 1 of 3) L1PA16|LINE|L1 86146 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 153-79 chr6 69663503 69663747 + 0.75 NA Intergenic Intergenic 132841 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 180-9 chr10 122387956 122388442 + 0.75 NA intron (NM_001195608, intron 1 of 13) L1MB5|LINE|L1 2130 NM_001195608 59338 Hs.643512 NM_021622 ENSG00000107679 PLEKHA1 TAPP1 pleckstrin homology domain containing A1 protein-coding 337.75-2 chr15 60984011 60984920 + 0.75 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 244837 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 400.5 chr2 68506588 68507569 + 0.75 NA intron (NM_173545, intron 3 of 9) L1ME3Cz|LINE|L1 39493 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 516.5 chr8 66591994 66593056 + 0.75 NA exon (NM_001080416, exon 8 of 16) exon (NM_001080416, exon 8 of 16) 20693 NM_001294282 4603 Hs.445898 NM_001080416 ENSG00000185697 MYBL1 A-MYB|AMYB MYB proto-oncogene like 1 protein-coding 224-9 chr11 38748444 38749093 + 0.75 NA Intergenic L1MC|LINE|L1 99910 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 156.5-28 chr12 75065570 75065913 + 0.75 NA intron (NM_001260499, intron 2 of 3) Tigger3a|DNA|TcMar-Tigger 144007 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 176-16 chr14 63530542 63530974 + 0.75 NA intron (NM_001354926, intron 2 of 2) AluSz|SINE|Alu -12026 NR_158218 112268140 Hs.632347 NR_158218 LOC112268140 - loricrin-like ncRNA 199.25-67 chr8 87812707 87813162 + 0.75 NA Intergenic Intergenic 61081 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 160.75-27 chr12 78105210 78105544 + 0.75 NA intron (NM_001024383, intron 12 of 39) MIR|SINE|MIR 254369 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 165.5-25 chr12 59928127 59928506 + 0.75 NA Intergenic L1MA3|LINE|L1 238946 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 193.25-45 chr4 36172523 36172933 + 0.75 NA intron (NR_146894, intron 9 of 32) intron (NR_146894, intron 9 of 32) 71211 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 151.75-41 chr17 81415594 81415917 + 0.75 NA intron (NM_001291324, intron 1 of 27) intron (NM_001291324, intron 1 of 27) -14977 NR_039894 100616294 NR_039894 ENSG00000266392 MIR4740 - microRNA 4740 ncRNA 185-48 chr3 138056019 138056471 + 0.75 NA Intergenic L1MB2|LINE|L1 46080 NM_016369 51208 Hs.655324 NM_016369 ENSG00000066405 CLDN18 SFTA5|SFTPJ claudin 18 protein-coding 224.25-27 chr4 97236684 97237298 + 0.75 NA Intergenic AluSz|SINE|Alu -129935 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 150-50 chr21 20907761 20908128 + 0.75 NA Intergenic Intergenic -90465 NM_001352596 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 245.5-2 chr1 100784200 100784749 + 0.75 NA Intergenic MLT2A1|LTR|ERVL 64732 NM_001078 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 168.25-35 chr2 72520141 72520574 + 0.75 NA intron (NR_135774, intron 8 of 19) intron (NR_135774, intron 8 of 19) 305676 NM_001321730 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 256.5-7 chr18 67203408 67203894 + 0.75 NA Intergenic Intergenic 122067 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 184.5-29 chr14 61443641 61444024 + 0.75 NA intron (NM_006255, intron 3 of 13) intron (NM_006255, intron 3 of 13) 122389 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 201.25-17 chr17 52008436 52008974 + 0.75 NA intron (NM_001082533, intron 3 of 9) intron (NM_001082533, intron 3 of 9) 150009 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 163-78 chr7 86576528 86576785 + 0.75 NA Intergenic Intergenic -67253 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 195.25-9 chr12 90132862 90133182 + 0.75 NA Intergenic MLT1I|LTR|ERVL-MaLR -160296 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 182-26 chr18 10501605 10501907 + 0.75 NA Intergenic L1MB5|LINE|L1 -24271 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 165.75-106 chr8 90589193 90589556 + 0.75 NA Intergenic Intergenic 16689 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 224.5-22 chr3 27100902 27101249 + 0.75 NA Intergenic Intergenic 115448 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 327 chr10 67360064 67360850 + 0.75 NA intron (NM_001127384, intron 5 of 17) L1PA16|LINE|L1 42953 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 149.5-60 chr3 55964940 55965273 + 0.75 NA intron (NR_132749, intron 11 of 17) MLT1E1A|LTR|ERVL-MaLR -112512 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 198.5-12 chr11 76069906 76070433 + 0.75 NA intron (NM_003369, intron 13 of 14) L1MA9|LINE|L1 136333 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 253.75-28 chr9 5189232 5189744 + 0.75 NA Intergenic Intergenic -3849 NM_007179 11172 Hs.632648 NM_007179 ENSG00000120210 INSL6 RIF1 insulin like 6 protein-coding 239.75-5 chr10 65834482 65834918 + 0.75 NA Intergenic MIR|SINE|MIR 263275 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 359.25-4 chr13 84807003 84807682 + 0.75 NA Intergenic Intergenic 23688 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 178.75-12 chr12 7490889 7491368 + 0.75 NA intron (NR_163255, intron 6 of 16) (AACA)n|Simple_repeat|Simple_repeat 12649 NR_163255 9332 Hs.504641 NM_004244 ENSG00000177575 CD163 M130|MM130|SCARI1 CD163 molecule protein-coding 215.75-30 chr6 47032459 47032928 + 0.75 NA intron (NM_153840, intron 1 of 14) MIR|SINE|MIR 9639 NM_025048 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 205.75-15 chr11 70423325 70423617 + 0.75 NA intron (NM_005231, intron 12 of 17) intron (NM_005231, intron 12 of 17) 24942 NM_001184740 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 152-20 chr14 57735438 57735880 + 0.75 NA intron (NR_159373, intron 1 of 10) MLT1H|LTR|ERVL-MaLR 129340 NM_001352013 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 178-17 chr14 20251703 20252044 + 0.75 NA Intergenic Charlie10|DNA|hAT-Charlie 9081 NM_001004479 390442 Hs.553767 NM_001004479 ENSG00000176198 OR11H4 OR14-36 olfactory receptor family 11 subfamily H member 4 protein-coding 298.75-7 chr3 144825869 144826662 + 0.75 NA Intergenic LTR12B|LTR|ERV1 853184 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 205-3 chr1 240717794 240718159 + 0.75 NA Intergenic Intergenic -105821 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 177.25-55 chr5 29671287 29671603 + 0.75 NA Intergenic Intergenic -209115 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 165.5-100 chr9 76026536 76027039 + 0.75 NA intron (NR_120409, intron 4 of 19) intron (NR_120409, intron 4 of 19) 136114 NM_006200 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 176-22 chr16 69609326 69609632 + 0.75 NA intron (NM_138714, intron 2 of 15) intron (NM_138714, intron 2 of 15) 43513 NM_138713 10725 Hs.371987 NM_006599 ENSG00000102908 NFAT5 NF-AT5|NFATL1|NFATZ|OREBP|TONEBP nuclear factor of activated T cells 5 protein-coding 168-41 chr2 190652437 190652738 + 0.75 NA intron (NM_005966, intron 2 of 9) intron (NM_005966, intron 2 of 9) 3504 NM_001321312 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 323.75 chr1 69227588 69228429 + 0.75 NA Intergenic MIRc|SINE|MIR 172110 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 177.25-30 chr18 30335861 30336255 + 0.75 NA Intergenic Intergenic 37148 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 224.25-19 chr2 82235738 82236225 + 0.75 NA Intergenic L3|LINE|CR1 -620822 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 251.25-17 chr2 181825782 181826352 + 0.75 NA Intergenic L1MEc|LINE|L1 -65663 NR_109843 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 216.5-9 chr14 46451042 46451437 + 0.75 NA intron (NR_102701, intron 5 of 5) intron (NR_102701, intron 5 of 5) -20120 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 172.5-83 chr8 84712871 84713210 + 0.75 NA intron (NM_001287244, intron 1 of 7) L1M2|LINE|L1 7113 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 222.5-33 chr3 152072210 152072741 + 0.75 NA Intergenic MER8|DNA|TcMar-Tigger 132954 NR_136178 101928166 NR_136178 LOC101928166 - uncharacterized LOC101928166 ncRNA 198.25-53 chr7 124656018 124656443 + 0.75 NA Intergenic L1MD1|LINE|L1 109562 NM_005302 2861 Hs.406094 NM_005302 ENSG00000170775 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 protein-coding 203.5-27 chr2 48663964 48664419 + 0.75 NA intron (NM_172311, intron 8 of 10) L1MCc|LINE|L1 46335 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 215.5-21 chr17 59694566 59694934 + 0.75 NA 3' UTR (NM_004859, exon 32 of 32) 3' UTR (NM_004859, exon 32 of 32) 12848 NM_001015509 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 188.5-48 chr4 46511298 46511675 + 0.75 NA Intergenic Intergenic -121358 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 252-13 chr8 106714030 106714617 + 0.75 NA intron (NM_181354, intron 9 of 13) intron (NM_181354, intron 9 of 13) -11784 NM_001198535 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 168.75-25 chr15 57379398 57379746 + 0.75 NA intron (NM_032866, intron 1 of 18) intron (NM_032866, intron 1 of 18) 3067 NM_032866 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 190.5-68 chr9 84216413 84216861 + 0.75 NA Intergenic HAL1|LINE|L1 124121 NR_037638 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 149.25-55 chr20 58018424 58018648 + 0.75 NA Intergenic Intergenic 14632 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 188-51 chr6 151419567 151419952 + 0.75 NA intron (NM_001271937, intron 8 of 10) intron (NM_001271937, intron 8 of 10) -28200 NM_020861 57621 Hs.520073 NM_020861 ENSG00000181472 ZBTB2 ZNF437 zinc finger and BTB domain containing 2 protein-coding 304.25 chr1 91052696 91053416 + 0.75 NA Intergenic Intergenic -30801 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 339.5-6 chr2 227895839 227896343 + 0.75 NA intron (NM_178821, intron 5 of 12) intron (NM_178821, intron 5 of 12) 24460 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 201-15 chr15 90047212 90047561 + 0.75 NA intron (NM_198526, intron 1 of 4) MIR|SINE|MIR 34821 NR_146321 109729181 Hs.655249 NR_146321 ENSG00000259291 ZNF710-AS1 - ZNF710 antisense RNA 1 ncRNA 169-16 chr12 77553915 77554278 + 0.75 NA Intergenic Intergenic -276798 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 215.25-52 chrX 65037335 65037782 + 0.75 NA Intergenic Intergenic -2817 NM_001243804 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 254.5-3 chr10 19966065 19966474 + 0.75 NA intron (NM_032812, intron 1 of 13) (TA)n|Simple_repeat|Simple_repeat 149837 NM_032812 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 163.75-72 chr8 112169929 112170181 + 0.75 NA Intergenic AluJr|SINE|Alu -473438 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 171.75-89 chr8 118170977 118171227 + 0.75 NA intron (NR_146234, intron 4 of 5) L1MB8|LINE|L1 -59283 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 146-14 chr11 97236209 97236578 + 0.75 NA Intergenic Intergenic 727968 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 160.75-74 chr22 28217526 28217761 + 0.75 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -242226 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 173-37 chr2 49766550 49766950 + 0.75 NA Intergenic Intergenic 207453 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 152.25-48 chr2 102477693 102478064 + 0.75 NA intron (NM_001011552, intron 1 of 11) intron (NM_001011552, intron 1 of 11) 4652 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 181.5-13 chr11 20684172 20684584 + 0.75 NA intron (NM_201551, intron 2 of 18) L1MEc|LINE|L1 14792 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 188.5-59 chr6 112283719 112284054 + 0.75 NA intron (NR_121193, intron 2 of 2) L1MD2|LINE|L1 -29171 NM_001105208 3910 Hs.654572 NM_002290 ENSG00000112769 LAMA4 CMD1JJ|LAMA3|LAMA4*-1 laminin subunit alpha 4 protein-coding 255.5-5 chr10 108781091 108781732 + 0.75 NA Intergenic Intergenic -712118 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 263.75-5 chr12 108447565 108448012 + 0.75 NA Intergenic MER4CL34|LTR|ERV1 25901 NR_120483 102723562 Hs.455693 NR_120483 ENSG00000247213 LINC01498 - long intergenic non-protein coding RNA 1498 ncRNA 176.75-80 chr7 7039543 7039991 + 0.75 NA Intergenic Intergenic 27278 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 168.25-16 chr13 82060996 82061407 + 0.75 NA Intergenic L1PA15|LINE|L1 -834218 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 160.75-45 chr17 59164393 59164658 + 0.75 NA intron (NM_018304, intron 1 of 9) intron (NM_018304, intron 1 of 9) 8779 NM_018304 55771 Hs.631750 NM_018304 ENSG00000068489 PRR11 - proline rich 11 protein-coding 161.5-30 chr13 64294709 64295117 + 0.75 NA Intergenic L1PA13|LINE|L1 -218902 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 162-9 chr10 94488692 94489053 + 0.75 NA intron (NM_015188, intron 3 of 12) L1MA2|LINE|L1 -56895 NM_001289070 3070 Hs.463677 NM_018063 ENSG00000119969 HELLS ICF4|LSH|Nbla10143|PASG|SMARCA6 helicase, lymphoid specific protein-coding 191.5-38 chr4 37079193 37079639 + 0.75 NA Intergenic (GTTT)n|Simple_repeat|Simple_repeat 77637 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 183.75-13 chr11 26345634 26346074 + 0.75 NA intron (NM_031418, intron 1 of 26) MIR|SINE|MIR 13724 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 275-20 chr8 54942987 54943533 + 0.75 NA Intergenic Intergenic -158768 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 255-3 chr13 92194060 92194406 + 0.75 NA intron (NM_004466, intron 7 of 7) MIRb|SINE|MIR 157974 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 177.5-58 chr8 117514134 117514524 + 0.75 NA Intergenic Intergenic -6384 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 211.25-13 chr14 64713625 64713909 + 0.75 NA intron (NM_001308147, intron 1 of 16) L1MEd|LINE|L1 9343 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 195.5-46 chr3 178270453 178270798 + 0.75 NA Intergenic L2a|LINE|L2 -148576 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 176.5-69 chr6 34271556 34272107 + 0.75 NA Intergenic AluJo|SINE|Alu -22723 NR_155742 221491 Hs.381300 NM_178508 ENSG00000186577 SMIM29 C6orf1|LBH small integral membrane protein 29 protein-coding 197.5-20 chr14 83116587 83117016 + 0.75 NA Intergenic UCON39|DNA|TcMar-Tigger 474169 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 216.25-15 chr18 8398821 8399256 + 0.75 NA intron (NM_002845, intron 30 of 30) LTR54B|LTR|ERV1 -32004 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 214.5-10 chr14 63915978 63916410 + 0.75 NA intron (NM_015180, intron 2 of 114) intron (NM_015180, intron 2 of 114) 63190 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 156.5-107 chr8 40570027 40570440 + 0.75 NA intron (NM_024645, intron 6 of 6) L1ME2|LINE|L1 -226870 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 210-41 chr4 62883810 62884344 + 0.75 NA Intergenic Intergenic -722312 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 204.75-30 chr3 17840084 17840500 + 0.75 NA Intergenic L2b|LINE|L2 97348 NR_135536 105376975 Hs.543238 NR_135536 LOC105376975 - uncharacterized LOC105376975 ncRNA 174-55 chr5 82248008 82248391 + 0.75 NA intron (NM_031482, intron 5 of 7) L1M4a1|LINE|L1 30155 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 167.75-71 chr5 19397727 19398108 + 0.75 NA Intergenic Intergenic 488355 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 277.25-10 chr6 66296725 66297210 + 0.75 NA Intergenic Intergenic 509088 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 167-27 chr14 92312420 92312839 + 0.75 NA Intergenic MIR3|SINE|MIR -9952 NM_153648 123041 Hs.385530 NM_153646 ENSG00000140090 SLC24A4 AI2A5|NCKX4|SHEP6|SLC24A2 solute carrier family 24 member 4 protein-coding 222.25-5 chr1 234228230 234228641 + 0.75 NA intron (NM_001300845, intron 1 of 6) intron (NM_001300845, intron 1 of 6) 14224 NM_001300845 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 366.25-4 chr18 4103658 4104523 + 0.75 NA intron (NM_001242761, intron 2 of 11) L1M5|LINE|L1 141737 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 152.75-20 chr11 98522025 98522341 + 0.75 NA Intergenic Intergenic -498766 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 165.5-38 chr16 35766524 35766807 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 20113 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 168.5-52 chr2 95103896 95104312 + 0.75 NA intron (NR_136152, intron 6 of 10) L1ME4a|LINE|L1 17453 NM_001321997 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 161.5-46 chr2 48365273 48365533 + 0.75 NA intron (NM_002158, intron 5 of 6) intron (NM_002158, intron 5 of 6) 50721 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 221.75-9 chr12 17272736 17273086 + 0.75 NA Intergenic Intergenic 284164 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 215.75-40 chr8 121971429 121972018 + 0.75 NA Intergenic L2c|LINE|L2 -330283 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 240.75 chr1 45200615 45201001 + 0.75 NA intron (NM_020883, intron 1 of 13) intron (NM_020883, intron 1 of 13) 5797 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 177.25-34 chr2 52904073 52904408 + 0.75 NA Intergenic Intergenic -201625 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 155.5-96 chr6 145749140 145749490 + 0.75 NA intron (NR_038246, intron 1 of 2) L1MB7|LINE|L1 -13292 NR_153398 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 166.5-90 chr8 115314679 115315192 + 0.75 NA Intergenic L1MEd|LINE|L1 353078 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 156.75-52 chr2 86449805 86450165 + 0.75 NA intron (NM_018433, intron 3 of 25) intron (NM_018433, intron 3 of 25) 8524 NM_001146688 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 174.5-36 chr2 14220324 14220626 + 0.75 NA Intergenic Intergenic 180483 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 186.75-30 chr14 67279163 67279485 + 0.75 NA exon (NM_022474, exon 3 of 15) exon (NM_022474, exon 3 of 15) 37889 NM_001256550 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 220.25-37 chr6 126636829 126637153 + 0.75 NA Intergenic L1MEd|LINE|L1 152360 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 178.75-18 chr14 68144756 68145120 + 0.75 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 321346 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 161.5-39 chr15 80198788 80199219 + 0.75 NA 3' UTR (NM_001352888, exon 3 of 3) 3' UTR (NM_001352888, exon 3 of 3) 46004 NM_000137 2184 Hs.73875 NM_000137 ENSG00000103876 FAH - fumarylacetoacetate hydrolase protein-coding 279-8 chr9 71441299 71441771 + 0.75 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 5436 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 200.25-47 chr7 99585697 99586227 + 0.75 NA Intergenic SATR1|Satellite|Satellite -12305 NM_001195541 100289187 Hs.729333 NM_001195541 ENSG00000244219 TMEM225B GS1-259H13.2 transmembrane protein 225B protein-coding 181.75-68 chr8 138295519 138295811 + 0.75 NA intron (NM_015912, intron 3 of 19) intron (NM_015912, intron 3 of 19) 201596 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 237-16 chr7 42782279 42782882 + 0.75 NA Intergenic Intergenic -76133 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 206.5-49 chr8 120133964 120134524 + 0.75 NA intron (NM_021110, intron 1 of 47) L1M5|LINE|L1 9142 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 165.5-53 chr2 186640434 186640807 + 0.75 NA intron (NM_001145000, intron 8 of 27) intron (NM_001145000, intron 8 of 27) 40415 NM_001144999 3685 Hs.436873 NM_002210 ENSG00000138448 ITGAV CD51|MSK8|VNRA|VTNR integrin subunit alpha V protein-coding 197.5-14 chr12 30105752 30106172 + 0.75 NA Intergenic Intergenic -321203 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 242.5-32 chr4 143781494 143782196 + 0.75 NA Intergenic Intergenic 47503 NR_134680 105377458 Hs.738046 NR_134680 LOC105377458 - uncharacterized LOC105377458 ncRNA 188-53 chr7 140133735 140134052 + 0.75 NA intron (NM_030647, intron 2 of 19) intron (NM_030647, intron 2 of 19) 43090 NM_030647 80853 Hs.308710 NM_030647 ENSG00000006459 KDM7A JHDM1D lysine demethylase 7A protein-coding 155.75-54 chr2 62902774 62903004 + 0.75 NA intron (NM_001142615, intron 10 of 22) intron (NM_001142615, intron 10 of 22) 144822 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 148.75-65 chr3 163682760 163683098 + 0.75 NA Intergenic Intergenic -379628 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 338.25 chr10 96745282 96746082 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR -4584 NR_026712 728658 Hs.645344 NR_026712 ENSG00000236552 RPL13AP5 RPL13A_8_1086|bA196N24.2 ribosomal protein L13a pseudogene 5 pseudo 149-81 chr5 22796836 22797085 + 0.75 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 56384 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 158.25-57 chr20 12525192 12525443 + 0.75 NA Intergenic L1ME3|LINE|L1 411646 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 237-6 chr2 195182843 195183358 + 0.75 NA Intergenic MER68|LTR|ERVL 452505 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 202.75-38 chr5 82209245 82209723 + 0.75 NA intron (NM_031482, intron 5 of 7) MLT1A0|LTR|ERVL-MaLR 68870 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 148.75-34 chr15 90049972 90050211 + 0.75 NA intron (NM_198526, intron 1 of 4) intron (NM_198526, intron 1 of 4) 32116 NR_146321 109729181 Hs.655249 NR_146321 ENSG00000259291 ZNF710-AS1 - ZNF710 antisense RNA 1 ncRNA 178.5-12 chr11 95307257 95307662 + 0.75 NA Intergenic Intergenic -74984 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 286.25-6 chr3 164253810 164254426 + 0.75 NA Intergenic Intergenic -82562 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 312.25-2 chr4 15538444 15539096 + 0.75 NA intron (NM_001080522, intron 17 of 37) intron (NM_001080522, intron 17 of 37) 68888 NM_001164720 57545 Hs.590928 NM_020785 ENSG00000048342 CC2D2A JBTS9|MKS6 coiled-coil and C2 domain containing 2A protein-coding 243.5-12 chr18 59264927 59265649 + 0.75 NA Intergenic AluJr|SINE|Alu 8166 NM_013435 30062 Hs.278957 NM_013435 ENSG00000134438 RAX MCOP3|RX retina and anterior neural fold homeobox protein-coding 301.75-7 chr4 136424599 136425105 + 0.75 NA Intergenic Intergenic -511172 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 201.25-41 chr6 95375991 95376279 + 0.75 NA Intergenic L1MC4|LINE|L1 201316 NR_104136 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 156.75-79 chr5 150668239 150668541 + 0.75 NA intron (NM_001122853, intron 2 of 6) L2-3_Crp|LINE|L2 7139 NM_001122853 91977 Hs.91626 NM_133371 ENSG00000164591 MYOZ3 CS-3|CS3|FATZ-3|FRP3 myozenin 3 protein-coding 178.25-59 chr5 121307677 121308113 + 0.75 NA Intergenic Intergenic -14655 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 164-21 chr15 89927741 89928136 + 0.75 NA Intergenic Intergenic -14986 NM_182616 348110 Hs.6734 NM_182616 ENSG00000242498 ARPIN C15orf38 actin related protein 2/3 complex inhibitor protein-coding 174.75-47 chr4 63933910 63934224 + 0.75 NA Intergenic L1MA5|LINE|L1 475383 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 229-2 chr1 185863656 185864195 + 0.75 NA intron (NM_031935, intron 2 of 106) L2a|LINE|L2 129534 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 164.5-101 chrX 68299320 68299759 + 0.75 NA intron (NM_002547, intron 2 of 24) MIR1_Amn|SINE|MIR 133956 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 164-10 chr11 41250780 41251033 + 0.75 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 208730 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 352.75-3 chr6 71574683 71575469 + 0.75 NA Intergenic Intergenic 154049 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 154.75-52 chr2 187813543 187813919 + 0.75 NA Intergenic Intergenic -259226 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 175.25-63 chr6 163968835 163969114 + 0.75 NA Intergenic MER34|LTR|ERV1 -297490 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 180-76 chrX 114006482 114006825 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR -68435 NR_131204 105463123 Hs.550218 NR_131204 XACT - X active specific transcript ncRNA 184.5-69 chr8 99631991 99632410 + 0.75 NA intron (NM_017890, intron 33 of 61) intron (NM_017890, intron 33 of 61) -95339 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 195.5-70 chr8 119800645 119801007 + 0.75 NA intron (NM_003184, intron 6 of 25) intron (NM_003184, intron 6 of 25) 32015 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 154-97 chr7 23000593 23000961 + 0.75 NA intron (NM_032581, intron 1 of 10) MLT1H2|LTR|ERVL-MaLR 13353 NM_001363466 84668 Hs.85603 NM_032581 ENSG00000122591 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126 member A protein-coding 202.5-28 chr2 59212691 59213133 + 0.75 NA Intergenic Intergenic -4796 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 210-9 chr14 64779523 64780007 + 0.75 NA exon (NM_001355437, exon 21 of 32) exon (NM_001355437, exon 21 of 32) 5921 NR_107009 102465841 NR_107009 ENSG00000284269 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 252.75-7 chr14 56090840 56091482 + 0.75 NA Intergenic Intergenic -27250 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 252.5-6 chr14 29260788 29261224 + 0.75 NA Intergenic L1MC3|LINE|L1 -475219 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 210-28 chr2 140498966 140499436 + 0.75 NA intron (NM_018557, intron 55 of 90) intron (NM_018557, intron 55 of 90) 87484 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 182.75-18 chr12 112004569 112004957 + 0.75 NA intron (NM_001193453, intron 2 of 9) AluJb|SINE|Alu 8402 NM_001193531 89894 Hs.506815 NM_138341 ENSG00000198270 TMEM116 - transmembrane protein 116 protein-coding 254.5-4 chr10 32607361 32607856 + 0.75 NA intron (NM_001321115, intron 19 of 43) L1MA4A|LINE|L1 161468 NR_109826 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 161.5-5 chr1 107401944 107402305 + 0.75 NA intron (NM_001113226, intron 3 of 6) MamRep605|LTR?|LTR? 254055 NM_001113226 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 202-32 chr3 67674747 67675185 + 0.75 NA intron (NR_109992, intron 3 of 6) intron (NR_109992, intron 3 of 6) 20269 NR_109993 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 202.5-45 chr4 49083900 49084247 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 97431 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 170.75-60 chr6 90259035 90259416 + 0.75 NA intron (NM_021813, intron 2 of 8) L1MA9|LINE|L1 37618 NM_021813 60468 Hs.269764 NM_021813 ENSG00000112182 BACH2 BTBD25|IMD60 BTB domain and CNC homolog 2 protein-coding 208-27 chr5 36534729 36535308 + 0.75 NA Intergenic AluSq2|SINE|Alu -71337 NM_001289939 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 149.75-63 chr4 71940701 71940930 + 0.75 NA Intergenic Intergenic -90989 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 406.5-2 chr8 109877316 109878293 + 0.75 NA Intergenic L2c|LINE|L2 97967 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 250.5-23 chr4 96384189 96384591 + 0.75 NA intron (NR_147149, intron 1 of 3) LTR8|LTR|ERV1 73687 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 187.75-21 chr14 68281462 68281908 + 0.75 NA intron (NM_133509, intron 7 of 10) MIRc|SINE|MIR 347102 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 174-14 chr11 76889007 76889278 + 0.75 NA intron (NM_001300953, intron 1 of 9) L1MEd|LINE|L1 28224 NM_018367 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 224.75-37 chr7 12096279 12096653 + 0.75 NA Intergenic Intergenic -114828 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 224.5-40 chrX 57787887 57788389 + 0.75 NA Intergenic L1MA2|LINE|L1 -107878 NM_001319967 286430 Hs.306842 NM_001319967 ENSG00000215174 NLRP2B CLRX.1|NALP2P|NLRP2P|NOD24|POP4 NLR family pyrin domain containing 2B protein-coding 161-23 chr12 78699111 78699462 + 0.75 NA Intergenic L1ME2|LINE|L1 -164696 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 253.75-5 chr11 30381764 30382186 + 0.75 NA Intergenic Intergenic 58871 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 355.25-6 chr9 31240259 31241028 + 0.75 NA Intergenic MER57A-int|LTR|ERV1 140847 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 211.75-41 chr7 106994867 106995392 + 0.75 NA Intergenic MLT1H1|LTR|ERVL-MaLR -49576 NM_002736 5577 Hs.433068 NM_002736 ENSG00000005249 PRKAR2B PRKAR2|RII-BETA protein kinase cAMP-dependent type II regulatory subunit beta protein-coding 194.5-44 chr4 90503617 90503949 + 0.75 NA intron (NM_207491, intron 5 of 7) LTR38-int|LTR|ERV1 268752 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 179.75-38 chr3 159305514 159306060 + 0.75 NA intron (NM_001197108, intron 1 of 6) MIRb|SINE|MIR 23141 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 173.75-54 chr4 174898144 174898652 + 0.75 NA Intergenic Intergenic -19960 NM_001278125 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 224-24 chr4 32167109 32167575 + 0.75 NA Intergenic L2c|LINE|L2 -144920 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 200.5-47 chr4 97979153 97979621 + 0.75 NA intron (NM_174952, intron 6 of 10) MLT1H1-int|LTR|ERVL-MaLR 164089 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 384.25 chr18 64076899 64077791 + 0.75 NA Intergenic LTR37A|LTR|ERV1 -26746 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 224-26 chr4 121640145 121640546 + 0.75 NA Intergenic Intergenic 56635 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 174.75-68 chr8 123844780 123845252 + 0.75 NA Intergenic LTR88a|LTR|Gypsy? -6971 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 182.25-21 chr2 46590545 46590818 + 0.75 NA intron (NM_173074, intron 5 of 6) intron (NM_173074, intron 5 of 6) -10443 NR_104182 100506142 Hs.658541 NR_104182 ENSG00000250116 LOC100506142 - uncharacterized LOC100506142 ncRNA 173.5-59 chr4 63110261 63110582 + 0.75 NA Intergenic L1M1|LINE|L1 -948656 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 153.25-87 chr4 104700852 104701271 + 0.75 NA Intergenic L2c|LINE|L2 -206167 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 225.25-19 chr2 181087307 181087844 + 0.75 NA Intergenic MamGypsy2-I|LTR|Gypsy -36262 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 248.5-15 chr4 55913109 55913609 + 0.75 NA Intergenic Intergenic -35586 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 160.75-73 chr22 25442014 25442394 + 0.75 NA Intergenic L1MC2|LINE|L1 -5883 NR_033734 1416 Hs.571835 NR_033733 ENSG00000100058 CRYBB2P1 CRYB2B crystallin beta B2 pseudogene 1 pseudo 186.25-35 chr3 59712421 59712793 + 0.75 NA Intergenic Intergenic -54110 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 223.5-16 chr13 66881627 66882096 + 0.75 NA intron (NR_046527, intron 3 of 5) intron (NR_046527, intron 3 of 5) 56692 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 194-44 chr5 166727621 166728030 + 0.75 NA Intergenic Intergenic 198545 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 195-27 chr2 136881822 136882251 + 0.75 NA intron (NM_001316349, intron 1 of 27) intron (NM_001316349, intron 1 of 27) 116491 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 214.75-52 chr9 126259929 126260404 + 0.75 NA Intergenic L1MC5|LINE|L1 15749 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 213-27 chr5 23137961 23138355 + 0.75 NA Intergenic Intergenic -284814 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 158.75-84 chr8 114797422 114797689 + 0.75 NA Intergenic Intergenic 870458 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 148.25-87 chr7 41610704 41610956 + 0.75 NA Intergenic Intergenic -83089 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 169.25-42 chr4 67790921 67791300 + 0.75 NA Intergenic Intergenic -35024 NM_000406 2798 Hs.407587 NM_000406 ENSG00000109163 GNRHR GNRHR1|GRHR|HH7|LHRHR|LRHR gonadotropin releasing hormone receptor protein-coding 170.25-7 chr11 23600529 23600909 + 0.75 NA Intergenic L1PB1|LINE|L1 -181529 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 195.25-29 chr2 178979172 178979637 + 0.75 NA intron (NM_001316745, intron 2 of 11) L1MEd|LINE|L1 70733 NM_001316745 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 225.75-29 chr7 20400102 20400643 + 0.75 NA intron (NM_002214, intron 9 of 13) intron (NM_002214, intron 9 of 13) -68610 NR_110120 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 266.5-12 chr3 187615444 187615967 + 0.75 NA Intergenic L3b|LINE|CR1 54689 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 229.75-34 chr7 69227234 69227636 + 0.75 NA Intergenic Intergenic 370189 NR_148926 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 159.75-22 chr11 111546152 111546470 + 0.75 NA intron (NM_001258391, intron 2 of 5) ERV3-16A3_I-int|LTR|ERVL 5803 NM_001258391 143903 Hs.503831 NM_178834 ENSG00000204381 LAYN - layilin protein-coding 164.75-68 chr5 35304350 35304606 + 0.75 NA Intergenic Intergenic -73991 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 292.75-10 chr8 99688443 99688982 + 0.75 NA intron (NM_017890, intron 35 of 61) LTR29|LTR|ERV1 -151851 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 221-34 chr8 67523405 67523815 + 0.75 NA intron (NM_020361, intron 2 of 10) intron (NM_020361, intron 2 of 10) 179776 NR_136223 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 186.75-26 chr14 43029465 43029774 + 0.75 NA Intergenic Charlie1b|DNA|hAT-Charlie 1422763 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 333.25-3 chr6 64121601 64122397 + 0.75 NA intron (NM_001292009, intron 31 of 43) intron (NM_001292009, intron 31 of 43) 315163 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 161.25-52 chr5 4821278 4821650 + 0.75 NA Intergenic L1MB7|LINE|L1 47983 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 147.5-34 chr18 51513703 51514141 + 0.75 NA intron (NR_040074, intron 1 of 2) intron (NR_040074, intron 1 of 2) 121880 NR_040074 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 306.75-10 chr7 15537318 15537829 + 0.75 NA intron (NM_001004320, intron 3 of 12) intron (NM_001004320, intron 3 of 12) 24442 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 171.5-11 chr1 196330714 196331053 + 0.75 NA intron (NM_001287820, intron 17 of 26) intron (NM_001287820, intron 17 of 26) -242168 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 202.25-15 chr12 55231118 55231443 + 0.75 NA Intergenic HAL1|LINE|L1 10255 NM_001005280 121364 Hs.554557 NM_001005280 ENSG00000179919 OR10A7 OR12-6 olfactory receptor family 10 subfamily A member 7 protein-coding 213.75-20 chr3 98944324 98944714 + 0.75 NA Intergenic Intergenic -42824 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 220.25-4 chr10 8389827 8390325 + 0.75 NA Intergenic Intergenic -121771 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 178.75-41 chr3 76465599 76465895 + 0.75 NA Intergenic Intergenic -574352 NM_002942 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 238.25-12 chr18 2092704 2093211 + 0.75 NA Intergenic L1ME4a|LINE|L1 478548 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 229.75-32 chr7 14554258 14554819 + 0.75 NA intron (NM_001350717, intron 19 of 24) L1ME3G|LINE|L1 286912 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 217.5-37 chr9 71282405 71282848 + 0.75 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -161005 NM_001366148 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 198-48 chr9 20078874 20079202 + 0.75 NA Intergenic MLT1B|LTR|ERVL-MaLR -292019 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 146.5-24 chr14 30851039 30851399 + 0.75 NA Intergenic AluSx4|SINE|Alu -23316 NM_001347720 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 162-75 chr7 134658450 134658781 + 0.75 NA 5' UTR (NM_199186, exon 2 of 4) 5' UTR (NM_199186, exon 2 of 4) 11762 NM_001724 669 Hs.198365 NM_001724 ENSG00000172331 BPGM DPGM|ECYT8 bisphosphoglycerate mutase protein-coding 197.25-45 chr7 10980172 10980724 + 0.75 NA intron (NR_033436, intron 2 of 16) intron (NR_033436, intron 2 of 16) 6576 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 159.5-49 chr20 55447283 55447663 + 0.75 NA Intergenic LTR16A|LTR|ERVL -20276 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 196-29 chr20 17380720 17381199 + 0.75 NA intron (NM_002594, intron 5 of 11) LTR16A2|LTR|ERVL 150420 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 176.25-70 chr8 131858753 131859126 + 0.75 NA Intergenic MIRc|SINE|MIR -45154 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 175-54 chr8 84458720 84458983 + 0.75 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 43367 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 194-12 chr10 115462445 115462880 + 0.75 NA intron (NM_207303, intron 22 of 28) intron (NM_207303, intron 22 of 28) 369297 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 201-39 chr9 81476375 81476718 + 0.75 NA Intergenic Intergenic 212989 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 213-12 chr17 40752815 40753452 + 0.75 NA intron (NM_181534, intron 3 of 7) intron (NM_181534, intron 3 of 7) 2198 NM_181534 147183 Hs.55412 NM_181534 ENSG00000204897 KRT25 ARWH3|KRT24IRS1|KRT25A keratin 25 protein-coding 200.25-31 chr2 82422807 82423121 + 0.75 NA Intergenic Intergenic -433839 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 201.5-18 chr17 29650569 29651063 + 0.75 NA intron (NM_033389, intron 11 of 14) intron (NM_033389, intron 11 of 14) -29393 NM_032854 84940 Hs.143046 NM_032854 ENSG00000167549 CORO6 - coronin 6 protein-coding 158.25-78 chr4 73141243 73141723 + 0.75 NA intron (NM_032217, intron 14 of 33) intron (NM_032217, intron 14 of 33) -71724 NM_001300729 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 175.5-71 chr4 25838197 25838467 + 0.75 NA intron (NM_001297592, intron 2 of 23) intron (NM_001297592, intron 2 of 23) 24656 NM_015187 23231 Hs.479384 NM_015187 ENSG00000091490 SEL1L3 Sel-1L3 SEL1L family member 3 protein-coding 207.25-41 chr4 53990226 53990752 + 0.75 NA Intergenic L2a|LINE|L2 -3207 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 167.75-73 chr5 53678453 53678822 + 0.75 NA intron (NR_134474, intron 5 of 5) intron (NR_134474, intron 5 of 5) 117998 NR_134475 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 237.75-20 chr5 23208417 23208934 + 0.75 NA Intergenic MER58A|DNA|hAT-Charlie -298934 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 279.5-6 chr21 23040373 23041158 + 0.75 NA Intergenic Intergenic -38519 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 182.5-52 chr4 188785535 188785869 + 0.75 NA TTS (NR_149102) TTS (NR_149102) 9045 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 154.25-46 chr2 82417606 82417867 + 0.75 NA Intergenic Intergenic -439067 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 157-98 chr8 109092143 109092367 + 0.75 NA intron (NM_003301, intron 2 of 2) intron (NM_003301, intron 2 of 2) 5627 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 183.5 chr1 30999442 30999932 + 0.75 NA intron (NM_001020658, intron 5 of 21) MIRc|SINE|MIR -31450 NR_003066 692200 NR_003066 SNORD103C HBII-251|SNORD85 small nucleolar RNA, C/D box 103C snoRNA 191.25-48 chr3 70051560 70051924 + 0.75 NA Intergenic Intergenic 51998 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 177.75-76 chr9 71585887 71586372 + 0.75 NA Intergenic Intergenic -139158 NM_001366143 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 208.75-13 chr17 12997675 12998124 + 0.75 NA intron (NM_001165962, intron 15 of 22) intron (NM_001165962, intron 15 of 22) 20128 NM_018127 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 154.75-15 chr11 5392080 5392480 + 0.75 NA intron (NM_001005567, intron 1 of 4) intron (NM_001005567, intron 1 of 4) 2903 NM_001004756 390059 Hs.553731 NM_001004756 ENSG00000184698 OR51M1 HOR5'Beta7|OR11-40 olfactory receptor family 51 subfamily M member 1 protein-coding 164.75-38 chr2 57434010 57434416 + 0.75 NA Intergenic Intergenic -473438 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 173.5-15 chr11 78744451 78744781 + 0.75 NA intron (NM_001098816, intron 19 of 33) intron (NM_001098816, intron 19 of 33) -169752 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 176-4 chr10 21872546 21872969 + 0.75 NA intron (NM_022365, intron 8 of 11) L1ME2|LINE|L1 130973 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 175.5-12 chr10 96539094 96539437 + 0.75 NA intron (NM_020123, intron 9 of 14) AluSx|SINE|Alu -25339 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 224-32 chr8 144936001 144936594 + 0.75 NA intron (NM_006958, intron 2 of 2) L1MB5|LINE|L1 14583 NM_006958 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 167.25-54 chr4 72719647 72720015 + 0.75 NA Intergenic L1ME4a|LINE|L1 -150610 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 212.5-23 chr2 149508445 149508926 + 0.75 NA Intergenic Intergenic -78673 NR_110240 101929231 Hs.5324 NR_110240 ENSG00000231969 LOC101929231 - uncharacterized LOC101929231 ncRNA 218.25-28 chr4 92047747 92048099 + 0.75 NA Intergenic HAL1|LINE|L1 229379 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 214.75-18 chr12 39863038 39863551 + 0.75 NA intron (NM_052885, intron 6 of 9) intron (NM_052885, intron 6 of 9) 237111 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 198.25-17 chr2 14295354 14295944 + 0.75 NA intron (NR_103814, intron 2 of 3) intron (NR_103814, intron 2 of 3) 105309 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 303.75-7 chr4 126460763 126461599 + 0.75 NA Intergenic Intergenic 953922 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 168.75-22 chr14 55184700 55185084 + 0.75 NA intron (NM_001146015, intron 2 of 19) MLT1F|LTR|ERVL-MaLR 6693 NM_014750 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 187.5-67 chr8 90250631 90250933 + 0.75 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 29294 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 175-19 chr2 115070286 115070820 + 0.75 NA intron (NM_001178037, intron 1 of 25) intron (NM_001178037, intron 1 of 25) 5980 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 154.75-9 chr10 51178215 51178647 + 0.75 NA intron (NM_001098512, intron 2 of 17) AluJb|SINE|Alu 103944 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 258.5-25 chr8 83772876 83773302 + 0.75 NA Intergenic Intergenic 369331 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 255-9 chr2 198097356 198097940 + 0.75 NA intron (NM_006226, intron 3 of 5) intron (NM_006226, intron 3 of 5) 277449 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 172.5-58 chr4 130145937 130146243 + 0.75 NA Intergenic Intergenic -230271 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 201.5-6 chr11 91275672 91275994 + 0.75 NA Intergenic Intergenic -406631 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 242.25-18 chr6 120676755 120677325 + 0.75 NA Intergenic Intergenic 657440 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 175-32 chr4 48170165 48170430 + 0.75 NA exon (NM_003215, exon 5 of 18) exon (NM_003215, exon 5 of 18) -36047 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 277.75-2 chr1 111943578 111944004 + 0.75 NA intron (NM_172198, intron 2 of 6) MIRc|SINE|MIR 34134 NR_046619 100873995 Hs.535274 NR_046619 ENSG00000237556 KCND3-AS1 - KCND3 antisense RNA 1 ncRNA 157.25-5 chr1 104188832 104189340 + 0.75 NA Intergenic Intergenic 116063 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 159.5-17 chr14 29814841 29815294 + 0.75 NA intron (NM_001330069, intron 1 of 18) intron (NM_001330069, intron 1 of 18) 112029 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 156.5-91 chr5 128375891 128376388 + 0.75 NA intron (NM_001999, intron 14 of 64) intron (NM_001999, intron 14 of 64) 162106 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 203.5-10 chr11 82447292 82447675 + 0.75 NA Intergenic L2c|LINE|L2 -43570 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 148.5-49 chr2 185933625 185933996 + 0.75 NA Intergenic L1M7|LINE|L1 -133659 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 227.5-13 chr2 106734405 106734966 + 0.75 NA Intergenic LTR33A|LTR|ERVL 151343 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 219-5 chr12 19219792 19220361 + 0.75 NA intron (NM_001256787, intron 1 of 25) L1ME2z|LINE|L1 14751 NM_001256787 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 193-11 chr11 75634681 75634951 + 0.75 NA intron (NM_207577, intron 1 of 2) intron (NM_207577, intron 1 of 2) 33618 NM_033063 4135 Hs.585540 NM_033063 ENSG00000171533 MAP6 MAP6-N|MTAP6|N-STOP|STOP microtubule associated protein 6 protein-coding 274.75-12 chr3 94456359 94456941 + 0.75 NA Intergenic Intergenic 393589 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 190.75-3 chr1 99010110 99010489 + 0.75 NA intron (NR_033940, intron 1 of 2) MIRb|SINE|MIR -5438 NM_001010861 163404 Hs.483948 NM_001010861 ENSG00000117598 PLPPR5 LPPR5|PAP2|PAP2D|PRG5 phospholipid phosphatase related 5 protein-coding 202.25-56 chr8 111034901 111035499 + 0.75 NA Intergenic Intergenic -7767 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 200.25-35 chr4 95272863 95273322 + 0.75 NA intron (NM_003728, intron 4 of 15) intron (NM_003728, intron 4 of 15) 181601 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 152.5-117 chrX 144314112 144314367 + 0.75 NA Intergenic Intergenic 430168 NM_001012989 389898 Hs.585177 NM_001012989 ENSG00000276380 UBE2NL Li174 ubiquitin conjugating enzyme E2 N like (gene/pseudogene) protein-coding 228.25-2 chr11 85301626 85302267 + 0.75 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 325324 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 154-42 chr18 21467323 21467630 + 0.75 NA intron (NM_001142966, intron 15 of 32) L1MB8|LINE|L1 133228 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 213.75-6 chr14 21872988 21873490 + 0.75 NA Intergenic Intergenic -202222 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 167.75-97 chr8 119428726 119429117 + 0.75 NA Intergenic Charlie16a|DNA|hAT-Charlie 12475 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 153.5-11 chr10 10470195 10470544 + 0.75 NA intron (NM_001326317, intron 1 of 14) MLT1E2|LTR|ERVL-MaLR 7819 NM_001326319 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 167.5-25 chr14 82055413 82055840 + 0.75 NA Intergenic Intergenic -312488 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 169.75-57 chr5 23263003 23263276 + 0.75 NA Intergenic Intergenic -244470 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 167.5-92 chr8 9094780 9095249 + 0.75 NA intron (NM_001354638, intron 7 of 7) MIRb|SINE|MIR -36384 NR_145772 109616996 NR_145772 SNORD3I - small nucleolar RNA, C/D box 3I snoRNA 215.75-15 chr19 57756715 57757103 + 0.75 NA non-coding (NR_145327, exon 4 of 4) non-coding (NR_145327, exon 4 of 4) 10094 NR_145327 284309 Hs.720254 NM_173632 ENSG00000152443 ZNF776 - zinc finger protein 776 protein-coding 190.25-32 chr4 99912826 99913155 + 0.75 NA intron (NM_001031723, intron 3 of 7) L1MD1|LINE|L1 -18444 NM_001243736 8649 Hs.433332 NM_021970 ENSG00000109270 LAMTOR3 MAP2K1IP1|MAPBP|MAPKSP1|MP1|PRO0633|Ragulator3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 protein-coding 230.75-37 chr6 105139008 105139539 + 0.75 NA intron (NR_037157, intron 1 of 3) MER58B|DNA|hAT-Charlie 1586 NR_037157 154442 Hs.586271 NR_037157 ENSG00000203808 BVES-AS1 C6orf112|bA99L11.2 BVES antisense RNA 1 ncRNA 152.5-84 chr5 17822918 17823147 + 0.75 NA intron (NR_134286, intron 2 of 7) intron (NR_134286, intron 2 of 7) 15758 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 288.25-10 chr4 145168507 145169087 + 0.75 NA intron (NM_017493, intron 3 of 6) L1ME1|LINE|L1 9361 NM_017493 54726 Hs.270851 NM_017493 ENSG00000164164 OTUD4 DUBA6|HIN1|HSHIN1 OTU deubiquitinase 4 protein-coding 305 chr1 224903694 224904371 + 0.75 NA Intergenic Intergenic -25622 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 203.5-69 chr8 54432379 54432833 + 0.75 NA Intergenic L1MB7|LINE|L1 -25329 NM_022454 64321 Hs.98367 NM_022454 ENSG00000164736 SOX17 VUR3 SRY-box transcription factor 17 protein-coding 279.75-12 chr5 18220779 18221262 + 0.75 NA Intergenic L1MC2|LINE|L1 413746 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 264-9 chr6 124541256 124541875 + 0.75 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 258560 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 150.25-20 chr11 69857796 69858138 + 0.75 NA Intergenic Tigger2|DNA|TcMar-Tigger -38551 NM_005247 2248 Hs.37092 NM_005247 ENSG00000186895 FGF3 HBGF-3|INT2 fibroblast growth factor 3 protein-coding 152-57 chr3 188060151 188060464 + 0.75 NA Intergenic L2b|LINE|L2 -83900 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 191.5-17 chr12 96326250 96326569 + 0.75 NA intron (NM_002595, intron 2 of 16) L2a|LINE|L2 70911 NM_001303511 2004 Hs.46523 NM_005230 ENSG00000111145 ELK3 ERP|NET|SAP-2|SAP2 ETS transcription factor ELK3 protein-coding 192.5-66 chrX 42856978 42857371 + 0.75 NA Intergenic Intergenic -79011 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 230.25-8 chr11 48265800 48266269 + 0.75 NA Intergenic Intergenic 2173 NM_001004726 390113 Hs.553742 NM_001004726 ENSG00000176567 OR4X1 OR11-104 olfactory receptor family 4 subfamily X member 1 (gene/pseudogene) protein-coding 168-72 chrX 11888827 11889303 + 0.75 NA intron (NM_001368398, intron 3 of 18) intron (NM_001368398, intron 3 of 18) 66626 NM_001368398 9758 Hs.657507 NM_014728 ENSG00000169933 FRMPD4 MRX104|PDZD10|PDZK10 FERM and PDZ domain containing 4 protein-coding 331.25-10 chr9 77402552 77403263 + 0.75 NA intron (NM_001018037, intron 67 of 70) intron (NM_001018037, intron 67 of 70) -44742 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 156.5-74 chr4 47678919 47679234 + 0.75 NA intron (NM_001278586, intron 7 of 13) intron (NM_001278586, intron 7 of 13) 26407 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 182-46 chr5 77085123 77085515 + 0.75 NA intron (NR_138050, intron 1 of 1) intron (NR_138050, intron 1 of 1) -1479 NR_024398 728723 Hs.161338 NR_024398 ENSG00000250802 ZBED3-AS1 - ZBED3 antisense RNA 1 ncRNA 181.5-68 chr8 8716210 8716756 + 0.75 NA Intergenic MER63C|DNA|hAT-Blackjack 14546 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 203.75-22 chr3 59882009 59882572 + 0.75 NA intron (NM_001354590, intron 7 of 8) intron (NM_001354590, intron 7 of 8) 198619 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 149.5-95 chr8 78691619 78692037 + 0.75 NA intron (NM_001362969, intron 5 of 9) intron (NM_001362969, intron 5 of 9) 25739 NR_156423 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 264.5-15 chr2 147370472 147370907 + 0.75 NA Intergenic L1MA4|LINE|L1 -473828 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 178.75-65 chr8 10417966 10418376 + 0.75 NA intron (NM_001199729, intron 6 of 6) intron (NM_001199729, intron 6 of 6) -56394 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 198.75-47 chr8 84314353 84314715 + 0.75 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) -100950 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 265.5-4 chr10 118705429 118706225 + 0.75 NA intron (NM_153810, intron 4 of 8) intron (NM_153810, intron 4 of 8) 49143 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 202.25-4 chr10 90375133 90375476 + 0.75 NA Intergenic Intergenic 165501 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 226.25-32 chr9 4295327 4295777 + 0.75 NA intron (NM_001042413, intron 1 of 10) L1ME3A|LINE|L1 4516 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 290.25-9 chr16 23338980 23339560 + 0.75 NA intron (NM_000336, intron 1 of 12) L1ME1|LINE|L1 36968 NM_000336 6338 Hs.414614 NM_000336 ENSG00000168447 SCNN1B BESC1|ENaCb|ENaCbeta|LIDLS1|SCNEB sodium channel epithelial 1 beta subunit protein-coding 183-38 chr5 14009165 14009602 + 0.75 NA Intergenic Intergenic -64903 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 186.75-12 chr10 125658225 125658743 + 0.75 NA intron (NM_001128202, intron 3 of 3) L1M5|LINE|L1 24679 NM_001318133 387718 Hs.148259 NM_001128202 ENSG00000175018 TEX36 C10orf122|bA383C5.1 testis expressed 36 protein-coding 244-12 chr2 151052264 151052770 + 0.75 NA Intergenic Intergenic 209346 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 151.25-3 chr1 168034350 168034746 + 0.75 NA intron (NM_001198956, intron 12 of 21) intron (NM_001198956, intron 12 of 21) 35888 NR_031702 100313835 NR_031702 ENSG00000221545 MIR1255B2 MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2 microRNA 1255b-2 ncRNA 247.75-26 chrX 12841092 12841733 + 0.75 NA Intergenic AluJr|SINE|Alu -25660 NM_016562 51284 Hs.659215 NM_016562 ENSG00000196664 TLR7 TLR7-like toll like receptor 7 protein-coding 215-37 chr8 128519216 128519559 + 0.75 NA intron (NR_121672, intron 2 of 7) MIRc|SINE|MIR 45292 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 204.75-17 chr14 84866064 84866442 + 0.75 NA Intergenic Intergenic -405679 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 179.5-64 chr5 124175506 124175884 + 0.75 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 262825 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 215.25-23 chr2 191958936 191959337 + 0.75 NA intron (NM_001305134, intron 7 of 9) intron (NM_001305134, intron 7 of 9) -112048 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 171.25-47 chr5 104610789 104611040 + 0.75 NA Intergenic Intergenic -488560 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 178.75-30 chr2 83640015 83640323 + 0.75 NA Intergenic L1MD2|LINE|L1 117355 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 195.25-22 chr18 68921003 68921516 + 0.75 NA intron (NM_001093729, intron 8 of 9) THE1B|LTR|ERVL-MaLR 123179 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 211-32 chr6 36645707 36646177 + 0.75 NA Intergenic L1ME4b|LINE|L1 -23430 NR_037491 100500885 NR_037491 ENSG00000263894 MIR3925 - microRNA 3925 ncRNA 318.25-8 chr9 29599753 29600392 + 0.75 NA Intergenic Intergenic -386471 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 254-2 chr14 56163574 56163962 + 0.75 NA intron (NM_021255, intron 1 of 5) L1MA1|LINE|L1 45357 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 150.5-95 chr5 44360660 44361028 + 0.75 NA intron (NM_004465, intron 1 of 2) intron (NM_004465, intron 1 of 2) -27888 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 171.25-64 chr8 124353102 124353537 + 0.75 NA intron (NM_194291, intron 1 of 6) L1MC4|LINE|L1 19380 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 183.5-25 chr17 54000729 54001120 + 0.75 NA Intergenic Intergenic 177997 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 149.75-27 chr14 63009985 63010219 + 0.75 NA intron (NM_139318, intron 2 of 10) intron (NM_139318, intron 2 of 10) 35356 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 204.5-39 chr6 79850632 79850984 + 0.75 NA Intergenic L1MA2|LINE|L1 -38562 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 218.25-19 chr2 144615506 144616074 + 0.75 NA Intergenic Intergenic -52177 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 206.75-34 chr21 28574460 28574822 + 0.75 NA Intergenic Intergenic 35323 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 327.5-6 chr2 185370580 185371354 + 0.75 NA Intergenic MLT2B1|LTR|ERVL -203895 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 159-42 chr2 193336156 193336442 + 0.75 NA Intergenic Intergenic 586454 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 189.5-33 chr2 86758994 86759362 + 0.75 NA intron (NM_022780, intron 4 of 8) intron (NM_022780, intron 4 of 8) 32536 NM_171827 925 Hs.85258 NM_001768 ENSG00000153563 CD8A CD8|Leu2|p32 CD8a molecule protein-coding 170-70 chrX 133219911 133220202 + 0.75 NA Intergenic Intergenic -1702 NM_016521 51270 NM_016521 ENSG00000183434 TFDP3 CT30|DP4|HCA661 transcription factor Dp family member 3 protein-coding 149-40 chr2 44412096 44412474 + 0.75 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 50338 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 205.25-22 chr20 50070091 50070522 + 0.75 NA Intergenic MER102b|DNA|hAT-Charlie -28677 NR_051976 100887755 Hs.195705 NR_051976 TRERNA1 LINC00651|treRNA translation regulatory long non-coding RNA 1 ncRNA 190.5-52 chr5 118513896 118514283 + 0.75 NA intron (NR_104610, intron 3 of 9) intron (NR_104610, intron 3 of 9) 48028 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 174.5-40 chr2 149043758 149044022 + 0.75 NA intron (NM_001317006, intron 1 of 4) L1MCa|LINE|L1 5191 NM_177964 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 173.75-28 chr18 30108625 30109133 + 0.75 NA Intergenic L1MEg|LINE|L1 -190031 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 364-3 chr2 205492057 205492788 + 0.75 NA intron (NM_057177, intron 19 of 21) intron (NM_057177, intron 19 of 21) -190078 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 221.5-40 chr4 117746455 117746818 + 0.75 NA Intergenic Intergenic -87765 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 178.5-27 chr14 82647657 82648195 + 0.75 NA intron (NR_146650, intron 1 of 5) intron (NR_146650, intron 1 of 5) 5294 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 180-11 chr12 15254110 15254553 + 0.75 NA Intergenic MamGypLTR1b|LTR|Gypsy -32914 NM_001190726 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 158.75-47 chr20 11255143 11255425 + 0.75 NA Intergenic MLT1H-int|LTR|ERVL-MaLR 18099 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 297.75-16 chr6 113459452 113459964 + 0.75 NA Intergenic Intergenic -26261 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 189-2 chr1 158973554 158973998 + 0.75 NA intron (NM_198928, intron 8 of 8) intron (NM_198928, intron 8 of 8) -26200 NM_001364867 3428 Hs.380250 NM_005531 ENSG00000163565 IFI16 IFNGIP1|PYHIN2 interferon gamma inducible protein 16 protein-coding 178.75-9 chr10 67891187 67891571 + 0.75 NA promoter-TSS (NM_001314049) promoter-TSS (NM_001314049) -23 NM_001314049 23411 Hs.369779 NM_012238 ENSG00000096717 SIRT1 SIR2|SIR2L1|SIR2alpha sirtuin 1 protein-coding 211.75-17 chr2 231120438 231121001 + 0.75 NA intron (NM_000867, intron 2 of 3) intron (NM_000867, intron 2 of 3) 4323 NM_000867 3357 Hs.421649 NM_000867 ENSG00000135914 HTR2B 5-HT(2B)|5-HT-2B|5-HT2B 5-hydroxytryptamine receptor 2B protein-coding 174-57 chr6 25974742 25974994 + 0.75 NA intron (NM_006355, intron 7 of 7) (ACA)n|Simple_repeat|Simple_repeat 12066 NM_006355 10475 Hs.584851 NM_006355 ENSG00000112343 TRIM38 RNF15|RORET tripartite motif containing 38 protein-coding 148-35 chr16 25624763 25625087 + 0.75 NA Intergenic MIRb|SINE|MIR -67034 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 176.75-2 chr1 55650279 55650669 + 0.75 NA Intergenic MIR3|SINE|MIR 294489 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 207.75-38 chr5 90086134 90086601 + 0.75 NA Intergenic L1MA5A|LINE|L1 -69647 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 162.25-44 chr20 9425353 9425771 + 0.75 NA intron (NM_000933, intron 24 of 35) intron (NM_000933, intron 24 of 35) -88796 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 262.75-10 chr17 42056453 42057238 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR -6244 NM_001358661 110806298 Hs.127116 NM_001358661 ENSG00000267221 C17orf113 - chromosome 17 open reading frame 113 protein-coding 168.75-82 chr5 43655447 43655894 + 0.75 NA intron (NM_012343, intron 14 of 21) intron (NM_012343, intron 14 of 21) -52440 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 205.75-54 chr7 93904576 93904980 + 0.75 NA Intergenic MIR|SINE|MIR -1789 NM_021955 2792 Hs.732212 NM_021955 ENSG00000127928 GNGT1 GNG1 G protein subunit gamma transducin 1 protein-coding 191-22 chr13 107345717 107346069 + 0.75 NA intron (NM_001080396, intron 1 of 2) L1MB2|LINE|L1 -24930 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 197.25-51 chr9 8367108 8367372 + 0.75 NA intron (NM_130392, intron 24 of 30) intron (NM_130392, intron 24 of 30) 366706 NM_130392 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 188-49 chr5 50300214 50300677 + 0.75 NA Intergenic Intergenic 140843 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 292.75-12 chrX 73086637 73087191 + 0.75 NA Intergenic Intergenic 6747 NR_110398 101928345 Hs.584657 NR_110398 ENSG00000226725 PABPC1L2B-AS1 - PABPC1L2B antisense RNA 1 (head to head) ncRNA 330.25-4 chr2 203593337 203593873 + 0.75 NA Intergenic L1ME5|LINE|L1 -58304 NM_213589 65059 Hs.471162 NM_025252 ENSG00000173166 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 234.25-21 chr8 54732518 54732968 + 0.75 NA Intergenic Intergenic 116647 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 146.75-17 chr10 120103083 120103299 + 0.75 NA Intergenic Intergenic 144678 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 166.25-64 chr7 49971216 49971612 + 0.75 NA intron (NM_001159878, intron 7 of 7) L1MB4|LINE|L1 121832 NM_001159878 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 203-20 chr2 22724943 22725327 + 0.75 NA Intergenic L1MA7|LINE|L1 188656 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 172.75-31 chr17 30325263 30325612 + 0.75 NA intron (NM_001319942, intron 3 of 5) intron (NM_001319942, intron 3 of 5) 8620 NM_001319942 388364 Hs.371005 NM_206832 ENSG00000182271 TMIGD1 TMIGD|UNQ9372 transmembrane and immunoglobulin domain containing 1 protein-coding 328-4 chr6 124787731 124788379 + 0.75 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -174490 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 173.75-38 chr2 189575454 189575858 + 0.75 NA intron (NM_014585, intron 2 of 7) intron (NM_014585, intron 2 of 7) 5155 NM_014585 30061 Hs.643005 NM_014585 ENSG00000138449 SLC40A1 FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3 solute carrier family 40 member 1 protein-coding 204.25-43 chr6 6129227 6129581 + 0.75 NA Intergenic Intergenic -39930 NR_049863 100847034 NR_049863 ENSG00000283616 MIR5683 - microRNA 5683 ncRNA 160.25-84 chr9 125742362 125742728 + 0.75 NA Intergenic Intergenic 3384 NR_122032 51145 Hs.104671 NM_016158 LOC51145 - uncharacterized LOC51145 ncRNA 196-12 chr13 63251061 63251403 + 0.75 NA intron (NR_126409, intron 3 of 6) intron (NR_126409, intron 3 of 6) 76862 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 265-16 chr8 55473125 55473705 + 0.75 NA intron (NM_052898, intron 2 of 2) intron (NM_052898, intron 2 of 2) -18094 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 271.75-15 chr4 105186652 105187259 + 0.75 NA intron (NR_126420, intron 2 of 5) intron (NR_126420, intron 2 of 5) 40270 NM_001127208 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 265-3 chr10 65454175 65454715 + 0.75 NA Intergenic Intergenic -116980 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 191.75-6 chr10 32786998 32787337 + 0.75 NA intron (NM_001321115, intron 30 of 43) L1MB4|LINE|L1 114305 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 250.75-22 chr4 97061367 97062000 + 0.75 NA Intergenic A-rich|Low_complexity|Low_complexity -305243 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 238.5-18 chr2 22250630 22251221 + 0.75 NA Intergenic THE1C|LTR|ERVL-MaLR -285554 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 211.25-26 chr2 227997509 227997923 + 0.75 NA intron (NM_030623, intron 7 of 10) intron (NM_030623, intron 7 of 10) 126085 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 177-60 chr6 125337820 125338183 + 0.75 NA Intergenic Intergenic -36034 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 224-31 chr8 122602545 122602921 + 0.75 NA Intergenic Intergenic -34089 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 233.25-12 chr15 52625045 52625422 + 0.75 NA intron (NM_019600, intron 2 of 12) MIR3|SINE|MIR 26807 NM_001286495 56204 Hs.152385 NM_019600 ENSG00000047346 FAM214A KIAA1370 family with sequence similarity 214 member A protein-coding 268.25-23 chr7 96591101 96591670 + 0.75 NA intron (NR_163950, intron 3 of 6) intron (NR_163950, intron 3 of 6) 72953 NR_038948 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 153.5-56 chr2 222709722 222710109 + 0.75 NA TTS (NM_058165) TTS (NM_058165) 38257 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 168-45 chr3 5872503 5872770 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -622381 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 210-61 chrX 98647591 98647930 + 0.75 NA Intergenic MIR|SINE|MIR -1083225 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 152-91 chr7 95863919 95864193 + 0.75 NA intron (NM_004411, intron 5 of 16) MamRTE1|LINE|RTE-BovB 91550 NM_001135557 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 214-14 chr16 89515679 89516187 + 0.75 NA intron (NM_001363850, intron 3 of 17) AluSx3|SINE|Alu 7530 NM_003119 6687 Hs.185597 NM_003119 ENSG00000197912 SPG7 CAR|CMAR|PGN|SPG5C SPG7 matrix AAA peptidase subunit, paraplegin protein-coding 189-38 chr22 26087390 26087892 + 0.75 NA Intergenic MIRb|SINE|MIR -81821 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 281.75-5 chr13 110364489 110365286 + 0.75 NA intron (NM_001846, intron 4 of 47) MER3|DNA|hAT-Charlie 23929 NR_107040 102465872 NR_107040 ENSG00000276765 MIR8073 hsa-mir-8073 microRNA 8073 ncRNA 150.5-84 chr4 80969972 80970336 + 0.75 NA Intergenic AluJr4|SINE|Alu -60554 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 211.5-33 chr3 34566211 34566681 + 0.75 NA Intergenic Intergenic 767816 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 187.5-62 chr7 31539562 31540130 + 0.75 NA intron (NM_001257968, intron 1 of 14) LTR19A|LTR|ERV1 10384 NM_001257968 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 210-16 chr15 94484584 94485017 + 0.75 NA TTS (NM_001159643) TTS (NM_001159643) 128870 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 148-86 chr7 49037247 49037515 + 0.75 NA Intergenic Intergenic 112834 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 148.75-70 chr4 63429466 63429814 + 0.75 NA Intergenic Intergenic 979810 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 232.75-30 chr6 169948071 169948459 + 0.75 NA Intergenic L1ME1|LINE|L1 -14358 NR_027434 100131532 Hs.703417 NR_027434 LOC100131532 - uncharacterized LOC100131532 ncRNA 148.25-95 chr8 88697311 88697619 + 0.75 NA Intergenic Intergenic -369982 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 231.25-12 chr12 62674394 62674788 + 0.75 NA intron (NM_020700, intron 8 of 9) MIRc|SINE|MIR 70905 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i|let-7i microRNA let-7i ncRNA 166.5-91 chr8 124191785 124192051 + 0.75 NA TTS (NR_125420) TTS (NR_125420) -20396 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 204-3 chr1 198280792 198281127 + 0.75 NA intron (NM_133494, intron 7 of 9) intron (NM_133494, intron 7 of 9) 123961 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 185.75-47 chr21 27835201 27835578 + 0.75 NA Intergenic L1MA4|LINE|L1 113010 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 178.25-2 chr1 103787092 103787525 + 0.75 NA Intergenic Intergenic 37467 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 232.5-30 chr3 128037631 128038153 + 0.75 NA Intergenic AluY|SINE|Alu -14545 NM_013336 29927 Hs.518236 NM_013336 ENSG00000058262 SEC61A1 HNFJ4|HSEC61|SEC61|SEC61A SEC61 translocon alpha 1 subunit protein-coding 161.25-41 chr2 230149681 230150017 + 0.75 NA Intergenic Kanga1|DNA|TcMar-Tc2 70135 NM_004510 3431 Hs.145150 NM_004509 ENSG00000135899 SP110 IFI41|IFI75|IPR1|VODI SP110 nuclear body protein protein-coding 236.75-6 chr13 67634260 67634869 + 0.75 NA Intergenic LSU-rRNA_Hsa|rRNA|rRNA 262177 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 203.5-18 chr16 49284644 49284989 + 0.75 NA Intergenic MLT1K|LTR|ERVL-MaLR -2978 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 320.75-8 chr5 23116378 23117174 + 0.75 NA Intergenic L1M|LINE|L1 -263432 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 162.25-26 chr18 6259891 6260324 + 0.75 NA non-coding (NR_110765, exon 3 of 3) non-coding (NR_110765, exon 3 of 3) 3363 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 222.25-26 chr3 99817111 99817643 + 0.75 NA promoter-TSS (NM_032359) promoter-TSS (NM_032359) -485 NM_032359 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 155.25-47 chr2 212576541 212576817 + 0.75 NA Intergenic L1M1|LINE|L1 -37877 NM_005235 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 172-13 chr10 62026405 62026852 + 0.75 NA intron (NM_032199, intron 4 of 9) intron (NM_032199, intron 4 of 9) -22729 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 186.75-3 chr1 155486015 155486333 + 0.75 NA intron (NM_018489, intron 2 of 27) L3|LINE|CR1 52994 NR_034180 645682 Hs.632482 NR_034180 ENSG00000237872 POU5F1P4 OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1 POU class 5 homeobox 1 pseudogene 4 pseudo 419-2 chr2 128712081 128713042 + 0.75 NA Intergenic L1MB3|LINE|L1 -152039 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 276.25-3 chr13 92204751 92205284 + 0.75 NA intron (NM_004466, intron 7 of 7) AluYm1|SINE|Alu 147190 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 158-76 chr6 55247502 55247722 + 0.75 NA intron (NM_001526, intron 2 of 7) intron (NM_001526, intron 2 of 7) -79857 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 183.75-84 chr6 62790299 62790717 + 0.75 NA Intergenic L1MEc|LINE|L1 -504281 NM_001350622 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 149-77 chr4 110884319 110884780 + 0.75 NA Intergenic Intergenic -23902 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 209.5-20 chr17 12705951 12706431 + 0.75 NA promoter-TSS (NR_104605) promoter-TSS (NR_104605) -56 NR_104605 101928418 Hs.620346 NR_104605 ENSG00000227274 LOC101928418 - uncharacterized LOC101928418 ncRNA 150.25-21 chr11 82629044 82629333 + 0.75 NA Intergenic LTR12F|LTR|ERV1 104676 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 161.5-59 chr3 16763752 16764049 + 0.75 NA Intergenic PABL_B|LTR|ERV1 -121055 NM_001144382 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 185.5-14 chr10 90210734 90211169 + 0.75 NA Intergenic MLT1J2|LTR|ERVL-MaLR -253578 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 210.5-3 chr10 15797693 15798188 + 0.75 NA intron (NM_024948, intron 10 of 14) intron (NM_024948, intron 10 of 14) 62567 NM_024948 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 177.25-70 chr7 104166526 104166763 + 0.75 NA intron (NM_002553, intron 10 of 13) intron (NM_002553, intron 10 of 13) 41369 NM_002553 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 324.5-6 chr3 89101061 89101741 + 0.75 NA Intergenic Intergenic -6220 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 149.25-76 chr4 61614138 61614358 + 0.75 NA intron (NM_001371343, intron 5 of 23) intron (NM_001371343, intron 5 of 23) 412076 NM_001371342 212.25-6 chr10 25537183 25537543 + 0.75 NA intron (NM_020752, intron 5 of 10) intron (NM_020752, intron 5 of 10) -114349 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 166.25-40 chr22 36997942 36998248 + 0.75 NA intron (NM_178552, intron 4 of 5) intron (NM_178552, intron 4 of 5) 9756 NM_178552 339669 Hs.124502 NM_178552 ENSG00000185264 TEX33 C22orf33|EAN57|cE81G9.2 testis expressed 33 protein-coding 208-13 chr15 97590815 97591193 + 0.75 NA Intergenic L2a|LINE|L2 -30306 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 167-32 chr17 69910065 69910361 + 0.75 NA Intergenic Intergenic -51494 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 190.25-11 chr14 20368093 20368541 + 0.75 NA 3' UTR (NM_007110, exon 55 of 55) 3' UTR (NM_007110, exon 55 of 55) 24703 NM_005484 10038 Hs.409412 NM_005484 ENSG00000129484 PARP2 ADPRT2|ADPRTL2|ADPRTL3|ARTD2|PARP-2|pADPRT-2 poly(ADP-ribose) polymerase 2 protein-coding 149.5-49 chr2 159686376 159686751 + 0.75 NA Intergenic L1MC3|LINE|L1 25879 NR_110586 29994 Hs.470369 NM_013450 ENSG00000123636 BAZ2B WALp4 bromodomain adjacent to zinc finger domain 2B protein-coding 193.25-56 chr6 154908260 154908562 + 0.75 NA Intergenic Intergenic 55051 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 228-15 chr2 199396995 199397532 + 0.75 NA intron (NR_134967, intron 4 of 4) intron (NR_134967, intron 4 of 4) 60676 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 284.75-4 chr12 32454630 32455068 + 0.75 NA intron (NM_001370298, intron 1 of 16) intron (NM_001370298, intron 1 of 16) -31123 NM_001304481 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 161.5-23 chr11 70861303 70861604 + 0.75 NA intron (NM_012309, intron 10 of 24) intron (NM_012309, intron 10 of 24) -1337 NR_073536 220070 Hs.326766 NM_145308 ENSG00000171671 SHANK2-AS3 C11orf76 SHANK2 antisense RNA 3 ncRNA 180-26 chr15 94619289 94619643 + 0.75 NA Intergenic Intergenic -235897 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 201.5-11 chr14 54269977 54270440 + 0.75 NA Intergenic L4_A_Mam|LINE|RTE-X -126660 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 200.25-15 chr14 37260892 37261290 + 0.75 NA intron (NM_138731, intron 4 of 13) intron (NM_138731, intron 4 of 13) 63154 NM_138731 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 189-44 chr4 46140528 46140894 + 0.75 NA Intergenic L1PB2|LINE|L1 -16657 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 228.75-4 chr11 35395340 35395809 + 0.75 NA intron (NM_001252652, intron 1 of 11) intron (NM_001252652, intron 1 of 11) 23984 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 239.75-24 chr8 61224472 61224971 + 0.75 NA Intergenic L1P3|LINE|L1 -63249 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 175-3 chr1 176544137 176544449 + 0.75 NA intron (NM_021936, intron 1 of 4) intron (NM_021936, intron 1 of 4) 81118 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 186.5-60 chr5 90313009 90313394 + 0.75 NA Intergenic MLT2B3|LTR|ERVL -23130 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 215-38 chr9 121031925 121032513 + 0.75 NA intron (NM_001735, intron 5 of 40) intron (NM_001735, intron 5 of 40) 18056 NM_001317164 727 Hs.494997 NM_001735 ENSG00000106804 C5 C5D|C5a|C5b|CPAMD4|ECLZB complement C5 protein-coding 195.5-21 chr15 100947379 100947696 + 0.75 NA intron (NM_024652, intron 2 of 33) L1MC4a|LINE|L1 28180 NM_024652 79705 Hs.407918 NM_024652 ENSG00000154237 LRRK1 RIPK6|Roco1 leucine rich repeat kinase 1 protein-coding 158.75-8 chr11 5175930 5176292 + 0.75 NA Intergenic Intergenic 2600 NM_001348257 283110 NM_001348257 OR52Z1 OR52Z1P olfactory receptor family 52 subfamily Z member 1 (gene/pseudogene) protein-coding 172-58 chr4 30960175 30960546 + 0.75 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -210784 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 186.25-59 chr7 22684895 22685332 + 0.75 NA Intergenic Intergenic -19580 NR_122075 401312 Hs.583393 NR_122075 ENSG00000105889 LOC401312 - uncharacterized LOC401312 ncRNA 151-33 chr18 4458315 4458733 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR -3217 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 179.75-27 chr2 137534719 137535113 + 0.75 NA intron (NM_001316349, intron 15 of 27) intron (NM_001316349, intron 15 of 27) 393016 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 201.25-14 chr16 35303270 35303701 + 0.75 NA Intergenic BSR/Beta|Satellite|Satellite -59931 NR_027080 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 173.25-30 chr18 53925080 53925376 + 0.75 NA Intergenic L1MEg|LINE|L1 297184 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 193.25-51 chr5 124569065 124569414 + 0.75 NA Intergenic Intergenic -130719 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 434.5-2 chr5 41720589 41721743 + 0.75 NA Intergenic Intergenic 122491 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 194-25 chr17 66316062 66316535 + 0.75 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) 13685 NM_002737 5578 Hs.531704 NM_002737 ENSG00000154229 PRKCA AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA protein kinase C alpha protein-coding 168.25-10 chr11 91656355 91656835 + 0.75 NA Intergenic Intergenic -568439 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 241.5-28 chr7 2420929 2421370 + 0.75 NA intron (NM_018641, intron 1 of 1) AluJo|SINE|Alu 17538 NM_018641 55501 Hs.288853 NM_018641 ENSG00000136213 CHST12 C4S-2|C4ST-2|C4ST2 carbohydrate sulfotransferase 12 protein-coding 271.25-11 chr21 28758256 28759076 + 0.75 NA Intergenic Intergenic 126701 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 348.75-2 chr11 101906129 101906876 + 0.75 NA intron (NM_178127, intron 3 of 8) L1MC4|LINE|L1 -8508 NM_001363543 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 198.5-27 chr2 80546448 80546848 + 0.75 NA intron (NM_001282599, intron 5 of 11) intron (NM_001282599, intron 5 of 11) 233269 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 160.25-83 chr9 103696374 103696736 + 0.75 NA Intergenic AluSp|SINE|Alu -303154 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 191.25-28 chr15 70200475 70200970 + 0.75 NA Intergenic Intergenic -102805 NM_020908 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 202.25-55 chr8 108898378 108898761 + 0.75 NA Intergenic L1M4|LINE|L1 -110975 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 176.5-29 chr17 47618273 47618717 + 0.75 NA intron (NM_001330257, intron 21 of 23) intron (NM_001330257, intron 21 of 23) -31424 NM_002265 3837 Hs.532793 NM_002265 ENSG00000108424 KPNB1 IMB1|IPO1|IPOB|Impnb|NTF97 karyopherin subunit beta 1 protein-coding 147.25-14 chr10 54618049 54618285 + 0.75 NA intron (NR_134503, intron 3 of 5) intron (NR_134503, intron 3 of 5) -10210 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 289.5-5 chr11 83721303 83721900 + 0.75 NA intron (NM_001142699, intron 18 of 27) Tigger6a|DNA|TcMar-Tigger -39176 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 147-121 chrX 25675123 25675368 + 0.75 NA Intergenic Intergenic -463098 NM_173699 286514 Hs.350683 NM_173699 ENSG00000176774 MAGEB18 - MAGE family member B18 protein-coding 199.75-15 chr12 93183569 93184129 + 0.75 NA intron (NR_040096, intron 3 of 4) intron (NR_040096, intron 3 of 4) 9483 NR_120492 102724933 Hs.663947 NR_120492 ENSG00000258171 LINC02412 - long intergenic non-protein coding RNA 2412 ncRNA 194.25-16 chr19 28515286 28515776 + 0.75 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) -91157 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 185.25-45 chr2 82310513 82310860 + 0.75 NA Intergenic AluSz|SINE|Alu -546117 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 153.5-24 chr12 104084572 104084972 + 0.75 NA intron (NM_013320, intron 7 of 14) L2a|LINE|L2 20241 NM_013320 29915 Hs.506558 NM_013320 ENSG00000111727 HCFC2 HCF-2|HCF2 host cell factor C2 protein-coding 209.25-14 chr17 56321459 56321810 + 0.75 NA intron (NM_001370326, intron 3 of 20) intron (NM_001370326, intron 3 of 20) 168159 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 246.25-28 chr3 151867400 151868035 + 0.75 NA intron (NR_110203, intron 1 of 2) intron (NR_110203, intron 1 of 2) -5926 NM_033050 56670 Hs.133181 NM_033050 ENSG00000198829 SUCNR1 GPR91 succinate receptor 1 protein-coding 196-38 chr5 9657646 9658153 + 0.75 NA intron (NR_027112, intron 11 of 12) L1MB2|LINE|L1 -27548 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 300.5-8 chr14 74026633 74027163 + 0.75 NA intron (NM_025057, intron 2 of 11) AluSx|SINE|Alu 7549 NM_025057 80127 Hs.644621 NM_025057 ENSG00000119636 BBOF1 C14orf45|CCDC176 basal body orientation factor 1 protein-coding 202-53 chr9 31265340 31265681 + 0.75 NA Intergenic Intergenic 115980 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 182.25-68 chrX 55249701 55250201 + 0.75 NA Intergenic L1MA2|LINE|L1 14895 NM_001017931 139793 Hs.163473 NM_001017931 ENSG00000204279 PAGE3 CT16.6|GAGED1|PAGE-3 PAGE family member 3 protein-coding 345.25-2 chr14 67048657 67049366 + 0.75 NA intron (NM_001024218, intron 9 of 21) intron (NM_001024218, intron 9 of 21) -140429 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 151.25-64 chr3 177816387 177816619 + 0.75 NA promoter-TSS (NR_110826) promoter-TSS (NR_110826) -362 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 196.25-24 chr17 47909559 47909868 + 0.75 NA intron (NR_103856, intron 2 of 2) intron (NR_103856, intron 2 of 2) 13477 NM_003110 6668 Hs.514276 NM_003110 ENSG00000167182 SP2 - Sp2 transcription factor protein-coding 162.5-49 chr20 40660547 40660827 + 0.75 NA Intergenic (AATA)n|Simple_repeat|Simple_repeat 28549 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 150.25-28 chr13 83899599 83899938 + 0.75 NA Intergenic Intergenic -17294 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 186.5-31 chr20 5607781 5608184 + 0.75 NA intron (NM_019593, intron 1 of 19) intron (NM_019593, intron 1 of 19) 3024 NM_019593 56261 Hs.636359 NM_019593 ENSG00000125772 GPCPD1 EDI3|GDE5|GDPD6|PREI4 glycerophosphocholine phosphodiesterase 1 protein-coding 295.75-6 chr22 50054462 50055315 + 0.75 NA intron (NM_001350317, intron 3 of 13) AluSx|SINE|Alu 3339 NM_001350317 164714 Hs.526713 NM_001080447 ENSG00000138892 TTLL8 - tubulin tyrosine ligase like 8 protein-coding 160.75-66 chr2 147915760 147916053 + 0.75 NA intron (NM_001278579, intron 6 of 11) intron (NM_001278579, intron 6 of 11) 70877 NM_001616 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 222-10 chr18 75203229 75203565 + 0.75 NA intron (NM_175907, intron 1 of 1) intron (NM_175907, intron 1 of 1) 2116 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 223.5-28 chr3 160222726 160223048 + 0.75 NA Intergenic Intergenic -2749 NM_001168214 401097 Hs.729755 NM_001168214 ENSG00000180044 C3orf80 - chromosome 3 open reading frame 80 protein-coding 157.75-65 chr3 85972535 85972813 + 0.75 NA intron (NM_001256504, intron 9 of 10) intron (NM_001256504, intron 9 of 10) -144624 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 213.25-48 chr8 107466213 107466521 + 0.75 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) 31551 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 189-64 chr9 29078338 29078726 + 0.75 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 133767 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 179.5-78 chr8 107322202 107322639 + 0.75 NA intron (NM_001199859, intron 3 of 8) intron (NM_001199859, intron 3 of 8) 14095 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 238.5-38 chr8 105377994 105378435 + 0.75 NA intron (NM_001362837, intron 1 of 7) intron (NM_001362837, intron 1 of 7) 58671 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 157.25-60 chr21 26631050 26631356 + 0.75 NA Intergenic L1MA9|LINE|L1 -57917 NR_135472 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 347.5-5 chr2 34743991 34744721 + 0.75 NA Intergenic Intergenic 66799 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 173-47 chr3 44653615 44653912 + 0.75 NA intron (NM_003420, intron 3 of 3) intron (NM_003420, intron 3 of 3) 5031 NM_003420 7584 Hs.288658 NM_003420 ENSG00000169981 ZNF35 HF.10|HF10|Zfp105 zinc finger protein 35 protein-coding 183.5-23 chr16 25668443 25668943 + 0.75 NA Intergenic L1M1|LINE|L1 -23266 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 164-32 chr2 37971278 37971697 + 0.75 NA intron (NR_102712, intron 2 of 3) L1M5|LINE|L1 21023 NM_144713 151393 Hs.591566 NM_144713 ENSG00000115841 RMDN2 BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4 regulator of microtubule dynamics 2 protein-coding 208.75-7 chr11 122502899 122503187 + 0.75 NA Intergenic Tigger3a|DNA|TcMar-Tigger -80172 NR_137179 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 151-69 chr4 101973711 101974028 + 0.75 NA intron (NM_017935, intron 7 of 16) MIRc|SINE|MIR 160027 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 182-42 chr4 117240865 117241233 + 0.75 NA Intergenic Intergenic 119590 NR_147151 105377389 Hs.129401 NR_147151 ENSG00000224932 LINC02262 - long intergenic non-protein coding RNA 2262 ncRNA 379 chr16 46398335 46399193 + 0.75 NA Intergenic Intergenic 170333 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 185.75-13 chr12 23787341 23787689 + 0.75 NA intron (NM_152989, intron 6 of 17) intron (NM_152989, intron 6 of 17) 162155 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 338.75 chr1 40777513 40778534 + 0.75 NA Intergenic Intergenic -5764 NM_004700 9132 Hs.473058 NM_004700 ENSG00000117013 KCNQ4 DFNA2|DFNA2A|KV7.4 potassium voltage-gated channel subfamily Q member 4 protein-coding 194.5-64 chr9 114437172 114437496 + 0.75 NA intron (NM_001083885, intron 3 of 11) L1MC4|LINE|L1 -11166 NM_001346890 25861 Hs.93836 NM_015404 ENSG00000095397 WHRN CIP98|DFNB31|PDZD7B|USH2D|WI whirlin protein-coding 236.25-15 chr17 44802107 44802524 + 0.75 NA 3' UTR (NM_005497, exon 3 of 3) 3' UTR (NM_005497, exon 3 of 3) 27972 NM_005497 10052 Hs.712052 NM_005497 ENSG00000182963 GJC1 CX45|GJA7 gap junction protein gamma 1 protein-coding 194.75-14 chr14 61507908 61508350 + 0.75 NA intron (NM_006255, intron 10 of 13) intron (NM_006255, intron 10 of 13) 62065 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 246.75-5 chr15 27015594 27016110 + 0.75 NA intron (NM_001270873, intron 2 of 5) L1MB1|LINE|L1 44671 NM_001270873 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 171.5-64 chr3 114008541 114009084 + 0.75 NA intron (NR_148531, intron 7 of 14) (TA)n|Simple_repeat|Simple_repeat 47714 NR_148531 57577 Hs.477159 NM_020817 ENSG00000163617 CCDC191 KIAA1407 coiled-coil domain containing 191 protein-coding 272 chr1 84381425 84382094 + 0.75 NA intron (NR_003927, intron 2 of 6) intron (NR_003927, intron 2 of 6) 3042 NR_003927 391051 Hs.647646 NR_003927 UOX UOXP|URICASE urate oxidase (pseudogene) pseudo 217.75-11 chr12 74216474 74216948 + 0.75 NA intron (NR_038300, intron 3 of 6) intron (NR_038300, intron 3 of 6) 75920 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 176-26 chr18 65056451 65056731 + 0.75 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 -693661 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 164.5-47 chr21 15215394 15215769 + 0.75 NA Intergenic Intergenic -150581 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 159.75-5 chr1 114728651 114728971 + 0.75 NA intron (NM_001007553, intron 12 of 19) MIRc|SINE|MIR -12040 NM_002524 4893 Hs.486502 NM_002524 ENSG00000213281 NRAS ALPS4|CMNS|N-ras|NCMS|NRAS1|NS6 NRAS proto-oncogene, GTPase protein-coding 262.5-6 chr13 63661612 63662368 + 0.75 NA Intergenic L1MC2|LINE|L1 -75445 NR_002171 283491 Hs.363054 NR_002171 OR7E156P - olfactory receptor family 7 subfamily E member 156 pseudogene pseudo 196-28 chr20 6979630 6979960 + 0.75 NA Intergenic Intergenic 212109 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 274-8 chr4 80655032 80655421 + 0.75 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) 319506 NM_001206997 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 178.5-4 chr1 167175409 167175756 + 0.75 NA non-coding (NR_110811, exon 4 of 4) non-coding (NR_110811, exon 4 of 4) 20223 NR_110811 101928484 Hs.568496 NR_110811 LINC01363 RBSG4 long intergenic non-protein coding RNA 1363 ncRNA 207-18 chr2 71375056 71375589 + 0.75 NA intron (NM_001252613, intron 8 of 27) MLT1J|LTR|ERVL-MaLR 43540 NM_014497 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 159-49 chr22 31473186 31473501 + 0.75 NA intron (NM_001164502, intron 2 of 16) MER105|DNA|hAT-Charlie 16213 NM_001164501 56478 Hs.517559 NM_019843 ENSG00000184708 EIF4ENIF1 4E-T|Clast4 eukaryotic translation initiation factor 4E nuclear import factor 1 protein-coding 177.5-18 chr14 52747260 52747718 + 0.75 NA intron (NM_001130701, intron 4 of 11) intron (NM_001130701, intron 4 of 11) 17323 NM_001130701 6815 Hs.364980 NM_145251 ENSG00000198252 STYX - serine/threonine/tyrosine interacting protein protein-coding 179.5-15 chr12 102382511 102382882 + 0.75 NA Intergenic L1PB1|LINE|L1 95854 NM_001111284 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 244-25 chr7 105299462 105299903 + 0.75 NA promoter-TSS (NM_001278273) promoter-TSS (NM_001278273) -903 NM_001278273 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 165.75-74 chr4 104979942 104980308 + 0.75 NA Intergenic L1M1|LINE|L1 -165750 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 270.25-8 chr17 65969820 65970416 + 0.75 NA intron (NM_001353129, intron 17 of 26) intron (NM_001353129, intron 17 of 26) -143575 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 201.25-33 chr3 103346990 103347324 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR 176959 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 187.75-6 chr10 43639236 43639685 + 0.75 NA intron (NR_038867, intron 1 of 4) L1M5|LINE|L1 -4412 NR_047557 414197 Hs.605832 NR_047557 ENSG00000226245 ZNF32-AS1 ZNF32OS1|bA402L1.8 ZNF32 antisense RNA 1 ncRNA 170.5-33 chr2 17426358 17426696 + 0.75 NA Intergenic Intergenic 91913 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 240-15 chr2 209253677 209254171 + 0.75 NA Intergenic Intergenic -170123 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 260.25-6 chr14 36043438 36043988 + 0.75 NA Intergenic Intergenic -26714 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 277-2 chr11 39751733 39752445 + 0.75 NA Intergenic Intergenic 541041 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 216.5-39 chr7 83020656 83021080 + 0.75 NA intron (NM_033026, intron 3 of 24) LTR26|LTR|ERV1 142016 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 204.75-34 chr3 77392842 77393322 + 0.75 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 295070 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 158.25-60 chr22 27309526 27309956 + 0.75 NA promoter-TSS (NR_134581) promoter-TSS (NR_134581) -910 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 228.25-4 chr13 75294974 75295585 + 0.75 NA intron (NM_001286658, intron 16 of 19) intron (NM_001286658, intron 16 of 19) 54691 NR_132375 106144536 Hs.591226 NR_132375 LINC01078 - long intergenic non-protein coding RNA 1078 ncRNA 226-9 chr14 55900099 55900729 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger -103740 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 254-11 chr5 92412262 92412703 + 0.75 NA Intergenic L2|LINE|L2 -1029165 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 252.5-12 chr2 115625082 115625793 + 0.75 NA intron (NM_001321912, intron 6 of 25) L3|LINE|CR1 281622 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 186.75-11 chr10 92407211 92407619 + 0.75 NA Intergenic LTR8|LTR|ERV1 -11246 NR_038243 100507674 Hs.568772 NR_038243 MARK2P9 - microtubule affinity regulating kinase 2 pseudogene 9 pseudo 193.25-54 chr6 61850454 61850913 + 0.75 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 276553 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 167.75-22 chr12 96687964 96688248 + 0.75 NA intron (NM_001306084, intron 42 of 67) intron (NM_001306084, intron 42 of 67) 198529 NM_001367885 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 186.5-51 chr4 69914777 69915076 + 0.75 NA Intergenic Intergenic -16142 NM_001890 1446 Hs.3155 NM_001890 ENSG00000126545 CSN1S1 CASA|CSN1 casein alpha s1 protein-coding 178.75-60 chr7 12424509 12424791 + 0.75 NA Intergenic L1M4|LINE|L1 -20709 NM_001346972 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 151.75-94 chr7 4352015 4352419 + 0.75 NA Intergenic L1MB3|LINE|L1 -217380 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 187.75-63 chr6 67130588 67130894 + 0.75 NA Intergenic Intergenic -924610 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 208-7 chr11 48057452 48058026 + 0.75 NA intron (NM_001098503, intron 1 of 8) intron (NM_001098503, intron 1 of 8) -39043 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 184.25-47 chr4 34990388 34990866 + 0.75 NA Intergenic A-rich|Low_complexity|Low_complexity -720880 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 169.25-28 chr2 178158443 178158734 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -35893 NM_001201482 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 262.25-17 chrX 123631247 123631653 + 0.75 NA intron (NM_001081550, intron 22 of 38) intron (NM_001081550, intron 22 of 38) 101602 NM_001081550 57187 Hs.149991 NM_020449 ENSG00000125676 THOC2 CXorf3|MRX12|MRX35|THO2|dJ506G2.1|hTREX120 THO complex 2 protein-coding 211.75-12 chr14 72813125 72813623 + 0.75 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 79275 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 390.5-2 chr14 41035127 41036143 + 0.75 NA intron (NR_109758, intron 3 of 3) intron (NR_109758, intron 3 of 3) 80924 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 186.25-5 chr10 124075076 124075474 + 0.75 NA intron (NM_001270765, intron 1 of 5) intron (NM_001270765, intron 1 of 5) 17131 NM_014863 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 253.25-11 chr2 183227367 183228110 + 0.75 NA Intergenic Intergenic 103295 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 174-35 chr2 231501079 231501362 + 0.75 NA Intergenic Intergenic 13119 NR_024079 151477 Hs.375211 NM_173513 ENSG00000181798 LINC00471 C2orf52 long intergenic non-protein coding RNA 471 ncRNA 146.75-43 chr18 79152248 79152486 + 0.75 NA intron (NR_148360, intron 6 of 31) L1ME3F|LINE|L1 82973 NR_148360 374868 Hs.465475 NM_198531 ENSG00000166377 ATP9B ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1 ATPase phospholipid transporting 9B (putative) protein-coding 307.75-4 chr3 96772447 96773235 + 0.75 NA Intergenic L1M1|LINE|L1 -41753 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 154-33 chr14 72110083 72110502 + 0.75 NA intron (NM_001370288, intron 2 of 16) MIRb|SINE|MIR 176765 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 168-23 chr16 8289326 8289904 + 0.75 NA Intergenic Intergenic 300223 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 198.75-29 chr18 53601785 53602218 + 0.75 NA Intergenic Intergenic -20942 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 273-2 chr1 96765073 96765545 + 0.75 NA intron (NM_001300985, intron 3 of 13) intron (NM_001300985, intron 3 of 13) 42671 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 165-50 chr20 52710882 52711221 + 0.75 NA Intergenic L1PA5|LINE|L1 90213 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 281.75-16 chr7 4029727 4030241 + 0.75 NA intron (NM_152744, intron 17 of 44) L3|LINE|CR1 -99701 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 170.5-55 chr4 48980228 48980708 + 0.75 NA Intergenic AluSz|SINE|Alu -5807 NM_025087 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 213-31 chr6 160148262 160148798 + 0.75 NA intron (NM_153187, intron 8 of 9) L1M7|LINE|L1 26699 NM_153187 6580 Hs.117367 NM_003057 ENSG00000175003 SLC22A1 HOCT1|OCT1|oct1_cds solute carrier family 22 member 1 protein-coding 186.25-12 chr13 20293481 20293823 + 0.75 NA Intergenic L1MD2|LINE|L1 -61257 NM_001110221 10804 Hs.511757 NM_006783 ENSG00000121742 GJB6 CX30|DFNA3|DFNA3B|DFNB1B|ECTD2|ED2|EDH|HED|HED2 gap junction protein beta 6 protein-coding 245.75-20 chr9 124731326 124731717 + 0.75 NA intron (NM_033334, intron 2 of 9) Tigger2b_Pri|DNA|TcMar-Tigger 37811 NR_029782 406956 NR_029782 ENSG00000207737 MIR181B2 MIRN181B2|mir-181b-2 microRNA 181b-2 ncRNA 185.75-88 chr9 31635112 31635436 + 0.75 NA Intergenic MIRb|SINE|MIR -253784 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 197-43 chr8 98018972 98019276 + 0.75 NA intron (NM_002380, intron 12 of 18) (TA)n|Simple_repeat|Simple_repeat 23093 NR_002581 26775 Hs.684855 NR_002581 ENSG00000207067 SNORA72 RNU72|U72 small nucleolar RNA, H/ACA box 72 snoRNA 207.75-4 chr10 85311170 85311643 + 0.75 NA Intergenic L1MCa|LINE|L1 -112468 NR_120667 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 164.5-35 chr2 153391299 153391781 + 0.75 NA Intergenic Intergenic 87222 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 171-18 chr14 48807969 48808266 + 0.75 NA Intergenic AluSx|SINE|Alu 778263 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 191-33 chr22 45851213 45851679 + 0.75 NA Intergenic Intergenic 90922 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 291-6 chr4 91846981 91847484 + 0.75 NA Intergenic ERVL-int|LTR|ERVL 430070 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 288-3 chr14 51701175 51701942 + 0.75 NA intron (NM_001267046, intron 4 of 13) intron (NM_001267046, intron 4 of 13) -15725 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 158.75-2 chr1 85573150 85573538 + 0.75 NA intron (NM_001134445, intron 1 of 6) intron (NM_001134445, intron 1 of 6) 4856 NM_001134445 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 190-61 chr6 158709478 158709950 + 0.75 NA intron (NM_001242395, intron 8 of 15) Ricksha_0|DNA|MULE-MuDR 46311 NM_001318745 94120 Hs.436977 NM_001009991 ENSG00000164674 SYTL3 SLP3 synaptotagmin like 3 protein-coding 184-4 chr1 180544514 180544785 + 0.75 NA Intergenic AluJo|SINE|Alu -14325 NR_125716 148756 NR_125716 ENSG00000236719 OVAAL LINC01131|OVAL ovarian adenocarcinoma amplified long non-coding RNA ncRNA 217.75-28 chr3 106249552 106249954 + 0.75 NA Intergenic Intergenic -380352 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 297.25-4 chr2 51222316 51223076 + 0.75 NA intron (NR_135237, intron 2 of 10) AluSz|SINE|Alu 190095 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 294.75 chr1 78550823 78551447 + 0.75 NA Intergenic Intergenic 60161 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 188.75-60 chr7 82514589 82514915 + 0.75 NA Intergenic MIR|SINE|MIR -70796 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 317.25-6 chr5 166982575 166983264 + 0.75 NA Intergenic Intergenic -56549 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 146.5-45 chr19 6140952 6141197 + 0.75 NA intron (NM_001289177, intron 1 of 14) L1ME4b|LINE|L1 5407 NM_001289177 81616 Hs.465720 NM_030924 ENSG00000130377 ACSBG2 BGR|BRGL|PRTD-NY3|PRTDNY3 acyl-CoA synthetase bubblegum family member 2 protein-coding 168.75-41 chr2 37226395 37226796 + 0.75 NA intron (NM_005760, intron 2 of 15) intron (NM_005760, intron 2 of 15) 5001 NM_005760 10153 Hs.135406 NM_005760 ENSG00000115816 CEBPZ CBF|CBF2|HSP-CBF|NOC1 CCAAT enhancer binding protein zeta protein-coding 244.75-21 chr7 15211287 15212010 + 0.75 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) -236790 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 163.25-46 chr21 22673471 22673819 + 0.75 NA Intergenic Intergenic -405639 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 242-15 chr2 227355548 227355984 + 0.75 NA intron (NM_001277068, intron 7 of 7) intron (NM_001277068, intron 7 of 7) 23540 NM_024795 79853 Hs.156652 NM_024795 ENSG00000168955 TM4SF20 PRO994|SLI5|TCCE518 transmembrane 4 L six family member 20 protein-coding 163.25-78 chr8 52447520 52447818 + 0.75 NA Intergenic L1ME5|LINE|L1 -37790 NM_001352872 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 258.25-28 chr9 72062989 72063375 + 0.75 NA Intergenic Intergenic -2577 NM_001128618 138240 Hs.371235 NM_001128618 ENSG00000204669 C9orf57 - chromosome 9 open reading frame 57 protein-coding 252.25-7 chr19 49297310 49297744 + 0.75 NA intron (NM_014037, intron 7 of 11) L1ME2|LINE|L1 11341 NR_036209 100422979 NR_036209 ENSG00000265407 MIR4324 mir-4324 microRNA 4324 ncRNA 179.5-22 chr14 69921621 69922136 + 0.75 NA intron (NM_001034852, intron 1 of 11) intron (NM_001034852, intron 1 of 11) 42462 NM_001034852 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 151.25-49 chr2 211914622 211915084 + 0.75 NA intron (NM_001042599, intron 3 of 26) intron (NM_001042599, intron 3 of 26) 511507 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 215.5-31 chr2 201023397 201023917 + 0.75 NA intron (NM_001321619, intron 3 of 11) intron (NM_001321619, intron 3 of 11) 48014 NM_001321628 285172 Hs.24701 NM_173822 ENSG00000155744 FAM126B HYCC2 family with sequence similarity 126 member B protein-coding 271-10 chr5 128778973 128779399 + 0.75 NA Intergenic Intergenic -185941 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 182.25-23 chr2 66274952 66275288 + 0.75 NA Intergenic L1MC5a|LINE|L1 83208 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 222.5-44 chr5 30189230 30189901 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR 309005 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 199.75-27 chr2 10634989 10635348 + 0.75 NA intron (NR_048552, intron 12 of 19) Tigger4b|DNA|TcMar-Tigger 54807 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 183.75-94 chr8 119721761 119722212 + 0.75 NA Intergenic MIR3|SINE|MIR -48596 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 225-15 chr4 67695841 67696384 + 0.75 NA intron (NM_018227, intron 2 of 32) intron (NM_018227, intron 2 of 32) 5043 NM_018227 55236 Hs.212774 NM_018227 ENSG00000033178 UBA6 E1-L2|MOP-4|UBE1L2 ubiquitin like modifier activating enzyme 6 protein-coding 234-5 chr11 69280703 69281160 + 0.75 NA Intergenic Intergenic -13224 NM_001293294 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 265 chr1 222650327 222650920 + 0.75 NA intron (NM_001300867, intron 4 of 22) intron (NM_001300867, intron 4 of 22) 6320 NM_001300867 375056 Hs.118474 NM_198551 ENSG00000154305 MIA3 ARNT|D320|TANGO|TANGO1|UNQ6077 MIA SH3 domain ER export factor 3 protein-coding 180-45 chr3 107833312 107833596 + 0.75 NA Intergenic (ACAGA)n|Simple_repeat|Simple_repeat 44614 NR_024276 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 184-38 chr4 34504454 34504841 + 0.75 NA Intergenic MER4E1|LTR|ERV1 -234900 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 212.5-27 chr21 28193536 28194063 + 0.75 NA intron (NR_126012, intron 3 of 5) L1PB4|LINE|L1 34868 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 204.75-5 chr1 174002641 174002994 + 0.75 NA Intergenic L2|LINE|L2 -9745 NM_172071 149041 Hs.30258 NM_172071 ENSG00000135870 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 246.25-39 chr9 28048096 28048474 + 0.75 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -474419 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 147.75-23 chr11 60092916 60093233 + 0.75 NA intron (NM_000139, intron 4 of 6) intron (NM_000139, intron 4 of 6) 4410 NM_000139 2206 Hs.386748 NM_000139 ENSG00000149534 MS4A2 APY|ATOPY|FCER1B|FCERI|IGEL|IGER|IGHER|MS4A1 membrane spanning 4-domains A2 protein-coding 238.25-14 chr2 12083414 12083841 + 0.75 NA TTS (NR_110198) TTS (NR_110198) 76511 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 148-69 chr4 33563388 33563672 + 0.75 NA Intergenic Intergenic 476363 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 151.25-48 chr2 184035322 184035673 + 0.75 NA Intergenic Intergenic -343478 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 152.25-67 chr3 145162794 145163160 + 0.75 NA Intergenic Intergenic 906208 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 152-31 chr19 27564426 27564654 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -228891 NR_110691 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 145.75-19 chr11 80081060 80081327 + 0.75 NA Intergenic Intergenic -640163 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 222.25-39 chr6 1959138 1959617 + 0.75 NA intron (NM_001253846, intron 6 of 10) intron (NM_001253846, intron 6 of 10) 216614 NM_001253846 2762 Hs.144496 NM_001500 ENSG00000112699 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 241-2 chr1 68083917 68084348 + 0.75 NA intron (NR_040077, intron 3 of 9) intron (NR_040077, intron 3 of 9) -32501 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 332-2 chr22 30353687 30354330 + 0.75 NA intron (NM_005877, intron 1 of 15) intron (NM_005877, intron 1 of 15) -2616 NM_001318335 550631 Hs.505597 NM_001017437 ENSG00000187860 CCDC157 - coiled-coil domain containing 157 protein-coding 161-60 chr4 39415599 39415896 + 0.75 NA intron (NM_175737, intron 1 of 4) Charlie21a|DNA|hAT-Charlie 3837 NR_049857 100847065 NR_049857 ENSG00000264621 MIR5591 - microRNA 5591 ncRNA 146.5-91 chr6 37155083 37155290 + 0.75 NA Intergenic MLT1B|LTR|ERVL-MaLR -14966 NM_002648 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 182.75-39 chr2 232747740 232748104 + 0.75 NA intron (NM_015575, intron 6 of 30) intron (NM_015575, intron 6 of 30) 13505 NR_103492 26058 Hs.565319 NM_015575 ENSG00000204120 GIGYF2 GYF2|PARK11|PERQ2|PERQ3|TNRC15 GRB10 interacting GYF protein 2 protein-coding 204.75-40 chr3 190830061 190830495 + 0.75 NA Intergenic Intergenic 32416 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 172-91 chr9 96011890 96012142 + 0.75 NA intron (NM_020207, intron 18 of 18) intron (NM_020207, intron 18 of 18) 9795 NR_024129 100188953 Hs.434310 NR_024129 ENSG00000225194 LINC00092 NCRNA00092 long intergenic non-protein coding RNA 92 ncRNA 197-27 chr3 12104202 12104499 + 0.75 NA intron (NM_133625, intron 1 of 12) L1MEd|LINE|L1 54562 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 180-67 chr8 62345825 62346138 + 0.75 NA intron (NM_001304533, intron 1 of 6) L1MA6|LINE|L1 97127 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 165.75-24 chr12 10788613 10789013 + 0.75 NA Intergenic Intergenic 13814 NM_023919 50837 Hs.533754 NM_023919 ENSG00000121377 TAS2R7 T2R7|TRB4 taste 2 receptor member 7 protein-coding 170.25-50 chr3 154536547 154537005 + 0.75 NA Intergenic L1M8|LINE|L1 -106586 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 269-4 chr12 33514266 33514841 + 0.75 NA Intergenic Intergenic -74734 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 198-25 chr4 48046345 48046884 + 0.75 NA Intergenic Intergenic 29842 NM_207330 152519 Hs.134190 NM_207330 ENSG00000163293 NIPAL1 NPAL1 NIPA like domain containing 1 protein-coding 248.75-11 chr3 197039640 197039981 + 0.75 NA Intergenic Intergenic -9993 NM_005929 4241 Hs.184727 NM_005929 ENSG00000163975 MELTF CD228|MAP97|MFI2|MTF1|MTf melanotransferrin protein-coding 160.75-47 chr18 9222244 9222523 + 0.75 NA intron (NM_001204056, intron 7 of 11) intron (NM_001204056, intron 7 of 11) 84820 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 171.5-104 chr8 139303221 139303532 + 0.75 NA Intergenic L1MEd|LINE|L1 -389335 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 171.25-62 chr8 119331171 119331555 + 0.75 NA Intergenic MER21B|LTR|ERVL 6192 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 188-22 chr14 60451654 60452063 + 0.75 NA intron (NM_174978, intron 16 of 17) intron (NM_174978, intron 16 of 17) 34205 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 169.5-4 chr1 81644890 81645342 + 0.75 NA intron (NM_001366008, intron 3 of 26) AluJr4|SINE|Alu -54654 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 349.25 chr11 28924726 28925492 + 0.75 NA Intergenic Intergenic -447561 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 241.5-24 chr5 125267929 125268322 + 0.75 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) -225136 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 179-7 chr11 107369867 107370158 + 0.75 NA intron (NM_152434, intron 12 of 17) intron (NM_152434, intron 12 of 17) 87834 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19 like cell cycle control factor 2 protein-coding 247.25-28 chrX 96111440 96111974 + 0.75 NA Intergenic L1M4|LINE|L1 226195 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 213.25-33 chr4 85280381 85280820 + 0.75 NA Intergenic Intergenic -194550 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 180.5-44 chr22 21107449 21107720 + 0.75 NA intron (NR_037566, intron 1 of 5) intron (NR_037566, intron 1 of 5) 4568 NR_037566 400892 Hs.745077 NM_207474 BCRP2 BCR-2|BCR2|BCRL2 BCR pseudogene 2 pseudo 343.75-5 chr2 105285787 105286887 + 0.75 NA intron (NM_001142621, intron 4 of 11) intron (NM_001142621, intron 4 of 11) 43319 NR_137328 9392 Hs.446350 NM_004257 ENSG00000135966 TGFBRAP1 TRAP-1|TRAP1|VPS3 transforming growth factor beta receptor associated protein 1 protein-coding 239.75-22 chr7 33837901 33838433 + 0.75 NA Intergenic Intergenic -66748 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 221.25-29 chr7 7735101 7735646 + 0.75 NA intron (NM_001302350, intron 3 of 4) intron (NM_001302350, intron 3 of 4) -16766 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 190-22 chr2 18126882 18127299 + 0.75 NA Intergenic Intergenic 248423 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 153.5-27 chr14 34199399 34199724 + 0.75 NA Intergenic Intergenic -248487 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 283-8 chr2 195970628 195971275 + 0.75 NA intron (NM_018897, intron 16 of 64) intron (NM_018897, intron 16 of 64) 97886 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 246.5-14 chr2 154140940 154141284 + 0.75 NA intron (NM_052917, intron 4 of 12) Tigger3b|DNA|TcMar-Tigger 196718 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 178.75-2 chr1 66054406 66054822 + 0.75 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -3896 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 258.25-17 chr4 113607612 113608252 + 0.75 NA intron (NM_001221, intron 4 of 18) MLT1L|LTR|ERVL-MaLR 153806 NM_001321591 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 160.75-24 chr12 34565571 34565895 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 543237 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 265.25-13 chr6 36156919 36157456 + 0.75 NA Intergenic L1M7|LINE|L1 26674 NM_002754 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 163.5-20 chr12 9857765 9858065 + 0.75 NA intron (NM_005127, intron 2 of 4) intron (NM_005127, intron 2 of 4) 11944 NM_005127 9976 Hs.85201 NM_005127 ENSG00000110852 CLEC2B AICL|CLECSF2|HP10085|IFNRG1 C-type lectin domain family 2 member B protein-coding 226.75-25 chr7 52216670 52217236 + 0.75 NA Intergenic L1MCa|LINE|L1 -818680 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 324.5 chr10 125884248 125884873 + 0.75 NA Intergenic Intergenic -3268 NM_018180 55760 Hs.370292 NM_018180 ENSG00000089876 DHX32 DDX32|DHLP1 DEAH-box helicase 32 (putative) protein-coding 218.75-24 chr7 54714107 54714694 + 0.75 NA Intergenic LTR53-int|LTR|ERVL 44811 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 154.25-12 chr10 64935873 64936271 + 0.75 NA Intergenic Intergenic -11554 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 243.75-3 chr12 37298941 37299520 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -1017544 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 146.25-45 chr2 180063486 180063777 + 0.75 NA Intergenic L1MEc|LINE|L1 -56334 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 203.25-41 chr7 88037665 88038291 + 0.75 NA intron (NM_001324421, intron 3 of 28) intron (NM_001324421, intron 3 of 28) 103727 NM_001324421 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 214.75-27 chr2 182349307 182349868 + 0.75 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) 77461 NM_001258313 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 242.5-30 chr4 109255207 109255950 + 0.75 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 47080 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 187.75-72 chr8 117641537 117642106 + 0.75 NA Intergenic L1ME3D|LINE|L1 121108 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 145.75-101 chr6 63261598 63261948 + 0.75 NA Intergenic Intergenic 58204 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 209-31 chr3 180770465 180770960 + 0.75 NA intron (NR_109986, intron 4 of 13) intron (NR_109986, intron 4 of 13) -91223 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 161-34 chr15 63255422 63255785 + 0.75 NA intron (NM_016530, intron 4 of 7) intron (NM_016530, intron 4 of 7) -21947 NM_001145646 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 204.5-24 chr3 64553267 64553601 + 0.75 NA intron (NM_001318781, intron 29 of 38) L1MB5|LINE|L1 -7912 NR_110151 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 225-5 chr12 59650153 59650698 + 0.75 NA intron (NM_001270623, intron 1 of 5) intron (NM_001270623, intron 1 of 5) -38945 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 157.25-12 chr11 35234766 35235035 + 0.75 NA Intergenic MLT1H|LTR|ERVL-MaLR 71950 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 178.25-11 chr12 14636516 14636803 + 0.75 NA intron (NM_004963, intron 19 of 26) L1MA4A|LINE|L1 59940 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 150.75-79 chr6 7654916 7655315 + 0.75 NA Intergenic AluJo|SINE|Alu 64917 NM_152551 154007 Hs.13366 NM_152551 ENSG00000168566 SNRNP48 C6orf151|dJ336K20B.1|dJ512B11.2 small nuclear ribonucleoprotein U11/U12 subunit 48 protein-coding 184.75-74 chr8 49164520 49164840 + 0.75 NA Intergenic L1ME1|LINE|L1 92336 NM_001256598 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 146.5-18 chr12 2040611 2040887 + 0.75 NA Intergenic Intergenic -7603 NR_046768 100874369 Hs.208723 NR_046768 ENSG00000256257 CACNA1C-IT2 - CACNA1C intronic transcript 2 ncRNA 160-89 chr8 142366816 142367166 + 0.75 NA intron (NM_001366903, intron 1 of 9) L1MC4a|LINE|L1 36191 NM_145003 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 216.5-10 chr14 65437158 65437673 + 0.75 NA intron (NR_038170, intron 1 of 10) MamTip1|DNA|hAT-Tip100 24685 NR_038170 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 185.75-82 chr8 30314713 30315047 + 0.75 NA Intergenic Intergenic -69621 NM_001008712 11030 Hs.334587 NM_006867 ENSG00000157110 RBPMS HERMES RNA binding protein, mRNA processing factor protein-coding 178.5-51 chr4 57831844 57832137 + 0.75 NA Intergenic Intergenic 406118 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 261-8 chr14 69414582 69414977 + 0.75 NA intron (NM_001330185, intron 1 of 5) L1ME2|LINE|L1 16087 NM_001330185 55334 Hs.432690 NM_018375 ENSG00000029364 SLC39A9 ZIP-9|ZIP9 solute carrier family 39 member 9 protein-coding 183.25-8 chr10 57688692 57689038 + 0.75 NA Intergenic Intergenic -384306 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 225.75-15 chr22 27934640 27935099 + 0.75 NA intron (NR_026963, intron 1 of 4) L1MC5|LINE|L1 -14257 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 167-92 chr8 141149456 141149791 + 0.75 NA intron (NM_001362798, intron 5 of 21) MER6A|DNA|TcMar-Tigger 21034 NR_148197 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 193.75-13 chr11 98083211 98083494 + 0.75 NA Intergenic L1M5|LINE|L1 -937597 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 273-5 chr15 86622907 86623731 + 0.75 NA intron (NM_152336, intron 22 of 24) intron (NM_152336, intron 22 of 24) -306351 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 231.25-29 chr4 108564661 108565077 + 0.75 NA intron (NR_026968, intron 1 of 3) intron (NR_026968, intron 1 of 3) 7636 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 171.5-77 chr4 183803207 183803613 + 0.75 NA intron (NR_132761, intron 1 of 2) intron (NR_132761, intron 1 of 2) 5388 NR_132761 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 184-28 chr2 121682442 121682851 + 0.75 NA intron (NR_037857, intron 2 of 3) HERVIP10FH-int|LTR|ERV1 32657 NR_037856 254128 Hs.712685 NR_037856 ENSG00000236859 NIFK-AS1 - NIFK antisense RNA 1 ncRNA 180.25-11 chr11 66098489 66098781 + 0.75 NA intron (NM_018026, intron 1 of 23) L1MC4|LINE|L1 28363 NM_018026 55690 Hs.644326 NM_018026 ENSG00000175115 PACS1 MRD17|SHMS phosphofurin acidic cluster sorting protein 1 protein-coding 221.25-19 chr2 125494646 125495271 + 0.75 NA Intergenic Intergenic 623027 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 292.25-4 chr4 172208284 172208829 + 0.75 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -394949 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 160.75-60 chr2 60326426 60326774 + 0.75 NA Intergenic Intergenic 56436 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 152.5-36 chr16 87143617 87144044 + 0.75 NA Intergenic Intergenic -68285 NR_110939 101928708 Hs.585717 NR_110939 ENSG00000261095 LOC101928708 - uncharacterized LOC101928708 ncRNA 239.5-32 chr5 120881165 120881733 + 0.75 NA Intergenic L1ME3A|LINE|L1 349985 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 160.5-95 chr5 89595063 89595425 + 0.75 NA Intergenic Intergenic 421476 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 180.75-13 chr12 10522894 10523236 + 0.75 NA TTS (NM_001357731) TTS (NM_001357731) 17172 NM_001357731 255308 Hs.547382 NM_001357731 ENSG00000180574 EIF2S3B EIF2S3L|eIF-2gA|eIF2gA eukaryotic translation initiation factor 2 subunit gamma B protein-coding 207.75-13 chr13 39683002 39683540 + 0.75 NA intron (NM_001145079, intron 8 of 18) L2c|LINE|L2 -19136 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 235.5-28 chr5 112416345 112416754 + 0.75 NA intron (NM_001347887, intron 1 of 23) intron (NM_001347887, intron 1 of 23) 2728 NM_022140 64097 Hs.584954 NM_022140 ENSG00000129595 EPB41L4A EPB41L4|NBL4 erythrocyte membrane protein band 4.1 like 4A protein-coding 332.5-4 chr5 25986091 25986911 + 0.75 NA Intergenic L1MA9|LINE|L1 795548 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 165.5-59 chr3 40114193 40114560 + 0.75 NA intron (NM_001284426, intron 1 of 14) Tigger3a|DNA|TcMar-Tigger 14365 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 203-30 chr3 188525561 188526015 + 0.75 NA intron (NM_001167672, intron 4 of 9) L1ME4a|LINE|L1 42878 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 253 chr11 122120769 122121242 + 0.75 NA intron (NR_137184, intron 1 of 1) L1ME1|LINE|L1 -4790 NM_001001786 414899 Hs.686109 NM_001001786 ENSG00000259571 BLID BRCC2 BH3-like motif containing, cell death inducer protein-coding 203.5-30 chr2 230130227 230130548 + 0.75 NA Intergenic Intergenic -61463 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 183-36 chr4 62397220 62397680 + 0.75 NA Intergenic L1MEf|LINE|L1 -235685 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 210-51 chr7 31860607 31860934 + 0.75 NA intron (NM_001191059, intron 8 of 18) L1ME3G|LINE|L1 173555 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 166-71 chr7 108102585 108102933 + 0.75 NA intron (NM_001318048, intron 10 of 17) intron (NM_001318048, intron 10 of 17) 27602 NM_007356 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 263.75-18 chr5 166027310 166027890 + 0.75 NA Intergenic MIRb|SINE|MIR 898770 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 150-61 chr3 79524805 79525120 + 0.75 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) 17075 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 163-89 chr9 30164188 30164707 + 0.75 NA Intergenic Intergenic 244007 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 250.25-14 chr2 82942066 82942734 + 0.75 NA Intergenic Intergenic 85597 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 365.25-4 chr2 144035455 144036195 + 0.75 NA intron (NM_001354355, intron 7 of 13) intron (NM_001354355, intron 7 of 13) 98758 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 222-21 chr5 152882239 152882585 + 0.75 NA intron (NR_109877, intron 2 of 4) intron (NR_109877, intron 2 of 4) 89937 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 234-20 chr8 134955080 134955631 + 0.75 NA Intergenic Intergenic 105420 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 214.5-44 chr6 134566103 134566739 + 0.75 NA Intergenic Intergenic -26416 NR_125856 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 241-17 chr2 204240259 204240626 + 0.75 NA Intergenic AluSg|SINE|Alu 303694 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 234-18 chr7 48371528 48372170 + 0.75 NA intron (NM_152701, intron 32 of 61) L1P3|LINE|L1 200391 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 174-36 chr20 45069216 45069641 + 0.75 NA intron (NM_001352385, intron 11 of 11) intron (NM_001352385, intron 11 of 11) 31699 NM_001322799 3787 Hs.117780 NM_002251 ENSG00000124134 KCNS1 Kv9.1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding 203-19 chr2 1935492 1935829 + 0.75 NA intron (NM_015025, intron 9 of 24) MIRc|SINE|MIR -191145 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 218-4 chr10 57373562 57374079 + 0.75 NA Intergenic HSMAR2|DNA|TcMar-Mariner -69261 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 165.25-13 chr13 55220947 55221283 + 0.75 NA Intergenic Intergenic 46661 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 305-5 chr22 49665341 49666022 + 0.75 NA Intergenic L1M5|LINE|L1 -8162 NR_110522 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 149.25-66 chr3 90009212 90009602 + 0.75 NA Intergenic Intergenic 901786 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 148-2 chr1 45362989 45363358 + 0.75 NA intron (NM_007170, intron 4 of 10) intron (NM_007170, intron 4 of 10) -22703 NM_001293192 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 184.25-35 chr2 188955672 188956111 + 0.75 NA Intergenic A-rich|Low_complexity|Low_complexity -18482 NM_000090 1281 Hs.443625 NM_000090 ENSG00000168542 COL3A1 EDS4A|EDSVASC|PMGEDSV collagen type III alpha 1 chain protein-coding 211.25-22 chr2 167571705 167572050 + 0.75 NA Intergenic Intergenic -246795 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 287.5-7 chr13 93001409 93002191 + 0.75 NA Intergenic Intergenic -43541 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 152-46 chr20 53926173 53926439 + 0.75 NA Intergenic Intergenic -50597 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 223.75-11 chr17 51640069 51640561 + 0.75 NA intron (NM_001082533, intron 7 of 9) intron (NM_001082533, intron 7 of 9) 204888 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 197.25-25 chr18 6904899 6905186 + 0.75 NA intron (NM_001010000, intron 15 of 16) L1MD1|LINE|L1 24827 NR_034100 400643 Hs.253920 NM_001103383 ENSG00000265933 LINC00668 - long intergenic non-protein coding RNA 668 ncRNA 222.5-21 chr18 9150469 9151071 + 0.75 NA intron (NM_001204056, intron 1 of 11) AluY|SINE|Alu 13207 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 195.5-35 chr20 49539455 49539823 + 0.75 NA exon (NM_000961, exon 5 of 10) exon (NM_000961, exon 5 of 10) 28498 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 173.75-10 chr10 84444285 84444681 + 0.75 NA intron (NM_018999, intron 6 of 10) MIRb|SINE|MIR 19314 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 196.75-9 chr10 100219271 100219697 + 0.75 NA intron (NM_001278, intron 5 of 20) MIRb|SINE|MIR 10112 NM_001278 1147 Hs.198998 NM_001278 ENSG00000213341 CHUK IKBKA|IKK-alpha|IKK1|IKKA|NFKBIKA|TCF16 component of inhibitor of nuclear factor kappa B kinase complex protein-coding 235.25-16 chr4 92481181 92481614 + 0.75 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 176998 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 164.5-92 chr8 79365526 79365860 + 0.75 NA Intergenic MER5B|DNA|hAT-Charlie 33505 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 306.25-11 chr6 61819462 61820233 + 0.75 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 245717 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 211.5 chr1 57632049 57632479 + 0.75 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) -207343 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 205.75-30 chr18 67240118 67240584 + 0.75 NA Intergenic Intergenic 158767 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 238.75-6 chr10 118672908 118673348 + 0.75 NA Intergenic Intergenic -77480 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 291.75-8 chr6 120718484 120719157 + 0.75 NA Intergenic Intergenic 615660 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 186.5-18 chr13 110739868 110740144 + 0.75 NA Intergenic Intergenic 24569 NM_001267728 3621 Hs.46700 NM_005537 ENSG00000153487 ING1 p24ING1c|p33|p33ING1|p33ING1b|p47|p47ING1a inhibitor of growth family member 1 protein-coding 165.25-67 chr8 82033499 82033836 + 0.75 NA Intergenic Helitron3Na_Mam|RC|Helitron -191381 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 202.25-54 chr7 39333864 39334426 + 0.75 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) -5011 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 158.25-67 chr3 130234879 130235236 + 0.75 NA intron (NR_027898, intron 10 of 22) intron (NR_027898, intron 10 of 22) 22237 NR_027898 646300 Hs.170475 NR_027898 COL6A4P2 COL6A4 collagen type VI alpha 4 pseudogene 2 pseudo 149-56 chr21 36156386 36156704 + 0.75 NA promoter-TSS (NM_001320714) promoter-TSS (NM_001320714) -237 NR_038893 100506428 Hs.651214 NR_038892 ENSG00000236830 CBR3-AS1 PlncRNA-1|PlncRNA1 CBR3 antisense RNA 1 ncRNA 176.75-79 chr6 129049267 129049664 + 0.75 NA intron (NM_000426, intron 1 of 64) intron (NM_000426, intron 1 of 64) 166324 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 210.75-37 chr5 169706027 169706585 + 0.75 NA intron (NR_156756, intron 14 of 52) intron (NR_156756, intron 14 of 52) 69031 NR_156756 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 241-20 chr21 26723654 26724095 + 0.75 NA Intergenic ORSL|DNA|hAT-Tip100 121535 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 172.25-3 chr1 215564565 215564867 + 0.75 NA Intergenic L1ME3G|LINE|L1 -2588 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 235-8 chr12 43395189 43395679 + 0.75 NA intron (NM_025003, intron 29 of 38) intron (NM_025003, intron 29 of 38) 156769 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 216-19 chr15 74658009 74658501 + 0.75 NA intron (NM_001142443, intron 6 of 9) intron (NM_001142443, intron 6 of 9) 37769 NM_025083 80153 Hs.96852 NM_025083 ENSG00000179151 EDC3 LSM16|MRT50|YJDC|YJEFN2|hYjeF_N2-15q23 enhancer of mRNA decapping 3 protein-coding 175-28 chr3 28468714 28469022 + 0.75 NA intron (NM_001324170, intron 3 of 6) L1MA2|LINE|L1 -106410 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 228.25-6 chr13 108405629 108406075 + 0.75 NA Intergenic L2c|LINE|L2 136223 NM_001145645 10673 Hs.525157 NM_006573 ENSG00000102524 TNFSF13B BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4 TNF superfamily member 13b protein-coding 206.5-42 chr6 157473536 157473887 + 0.75 NA intron (NM_024630, intron 1 of 8) Tigger4b|DNA|TcMar-Tigger -55421 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 169.5-26 chr12 15597457 15597898 + 0.75 NA 3' UTR (NM_030670, exon 13 of 13) 3' UTR (NM_030670, exon 13 of 13) 51066 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 228-31 chr8 83397248 83397744 + 0.75 NA Intergenic Intergenic -6262 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 219 chr1 80019033 80019364 + 0.75 NA Intergenic L1ME3E|LINE|L1 -516557 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 202.5-47 chr5 7366439 7366918 + 0.75 NA Intergenic Charlie1a|DNA|hAT-Charlie -18701 NR_134277 101929261 Hs.308202 NR_134277 ENSG00000250668 LINC02123 - long intergenic non-protein coding RNA 2123 ncRNA 151-21 chr15 46846549 46846925 + 0.75 NA Intergenic L1MA5|LINE|L1 -337352 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 250.75-33 chrX 83103069 83103627 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 -404942 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 181.75-31 chr2 63981827 63982159 + 0.75 NA intron (NM_016516, intron 2 of 22) intron (NM_016516, intron 2 of 22) 37435 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 232.75-20 chr3 94810606 94811116 + 0.75 NA Intergenic Intergenic -127402 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 224.75-3 chr1 104816945 104817605 + 0.75 NA Intergenic L1M4|LINE|L1 744252 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 266.25-5 chr2 64381014 64381586 + 0.75 NA Intergenic Intergenic -40452 NR_106995 102465833 NR_106995 ENSG00000264297 MIR4433B hsa-mir-4433b microRNA 4433b ncRNA 175.5-33 chr16 13767937 13768464 + 0.75 NA Intergenic Intergenic -151957 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 263.75-9 chr18 73145741 73146413 + 0.75 NA Intergenic Intergenic 118421 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 224-29 chr7 97025487 97025912 + 0.75 NA promoter-TSS (NM_005221) promoter-TSS (NM_005221) -868 NM_005221 1749 Hs.99348 NM_005221 ENSG00000105880 DLX5 SHFM1D distal-less homeobox 5 protein-coding 167.25-10 chr11 19591897 19592345 + 0.75 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 16811 NR_039706 100616118 NR_039706 ENSG00000265210 MIR4486 - microRNA 4486 ncRNA 199-35 chr7 49916847 49917288 + 0.75 NA 3' UTR (NM_198570, exon 4 of 4) 3' UTR (NM_198570, exon 4 of 4) 141734 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 190.75-45 chr3 111449903 111450321 + 0.75 NA Intergenic L1PA15|LINE|L1 -92085 NM_005816 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 286.5-20 chr8 127534523 127534991 + 0.75 NA Intergenic Intergenic -52618 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 268-12 chr4 96353562 96354126 + 0.75 NA intron (NR_147149, intron 1 of 3) intron (NR_147149, intron 1 of 3) 43141 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 231-27 chr7 84038717 84039111 + 0.75 NA intron (NM_006080, intron 6 of 16) intron (NM_006080, intron 6 of 16) 155875 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 148-79 chr6 40031601 40031875 + 0.75 NA Intergenic Intergenic -97276 NM_001358529 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 162.75-57 chr4 137714218 137714740 + 0.75 NA Intergenic Intergenic 168748 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 215.75-13 chr15 94494386 94494845 + 0.75 NA Intergenic Intergenic 138685 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 217.25-37 chr5 24643135 24643603 + 0.75 NA intron (NM_001362460, intron 1 of 9) intron (NM_001362460, intron 1 of 9) 1609 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 157.5-82 chr5 120747690 120748015 + 0.75 NA Intergenic Intergenic 216388 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 249.75-3 chr12 974796 975483 + 0.75 NA intron (NM_001297419, intron 1 of 11) MER44A|DNA|TcMar-Tigger 14902 NM_001297419 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 257-12 chr8 117702993 117703512 + 0.75 NA Intergenic MamGypLTR1a|LTR|Gypsy 182539 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 257-2 chr1 213938041 213938817 + 0.75 NA intron (NR_037850, intron 2 of 5) intron (NR_037850, intron 2 of 5) 13680 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 170-60 chr7 54516346 54516740 + 0.75 NA Intergenic L1M4|LINE|L1 -25782 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 260.25-26 chr6 128848850 128849294 + 0.75 NA Intergenic Intergenic -34066 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 219.5-20 chr4 57009741 57010241 + 0.75 NA intron (NM_001303269, intron 11 of 25) intron (NM_001303269, intron 11 of 25) 31095 NM_000938 5431 Hs.602757 NM_000938 ENSG00000047315 POLR2B POL2RB|RPB2|hRPB140 RNA polymerase II subunit B protein-coding 245-18 chr6 52997767 52998257 + 0.75 NA Intergenic Intergenic 2392 NR_001445 125050 NR_001445 ENSG00000202198 RN7SK 7SK RNA component of 7SK nuclear ribonucleoprotein snRNA 228.75-17 chr3 110531701 110532064 + 0.75 NA Intergenic Intergenic 538077 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 211.5-29 chr2 76114607 76114964 + 0.75 NA Intergenic Intergenic -403870 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 297-3 chr2 180927246 180927848 + 0.75 NA Intergenic Intergenic -52838 NM_182678 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 180.75-67 chr8 31788488 31788959 + 0.75 NA intron (NM_013962, intron 1 of 4) MIR|SINE|MIR 148971 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 185-44 chr3 44072287 44072733 + 0.75 NA Intergenic Intergenic -41702 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 240-25 chr5 105782087 105782541 + 0.75 NA Intergenic Intergenic 682840 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 203-47 chr9 101712633 101713029 + 0.75 NA intron (NM_133445, intron 1 of 8) MIR|SINE|MIR 25749 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 252.5-2 chr1 178522699 178523388 + 0.75 NA TTS (NM_032126) TTS (NM_032126) 9934 NM_001170723 84066 Hs.534501 NM_032126 ENSG00000240021 TEX35 C1orf49|TSC24 testis expressed 35 protein-coding 268.25-9 chr16 7225537 7226232 + 0.75 NA intron (NM_018723, intron 4 of 15) L1PA5|LINE|L1 -106961 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 169-58 chr6 77820797 77821314 + 0.75 NA intron (NM_001282136, intron 3 of 4) L1MEd|LINE|L1 168016 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 158-63 chr5 11349860 11350167 + 0.75 NA intron (NM_001288715, intron 7 of 20) AluSg|SINE|Alu 238904 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 163.75-23 chr14 54480253 54480552 + 0.75 NA intron (NM_004124, intron 5 of 6) intron (NM_004124, intron 5 of 6) 8578 NM_004124 2764 Hs.151413 NM_004124 ENSG00000197045 GMFB GMF glia maturation factor beta protein-coding 259-12 chr8 78213712 78214226 + 0.75 NA Intergenic Intergenic -302371 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 162-68 chr6 126040298 126040700 + 0.75 NA intron (NR_146799, intron 13 of 13) intron (NR_146799, intron 13 of 13) 53959 NR_146804 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 167-62 chr4 114706246 114706673 + 0.75 NA Intergenic Intergenic 49700 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 199.25-53 chr5 103221386 103221855 + 0.75 NA Intergenic Intergenic -37143 NM_033211 90355 Hs.482976 NM_033211 ENSG00000181751 C5orf30 - chromosome 5 open reading frame 30 protein-coding 181.25-41 chr3 150171916 150172269 + 0.75 NA Intergenic Intergenic -66427 NR_110168 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 174.75-10 chr10 56703878 56704211 + 0.75 NA Intergenic L1ME1|LINE|L1 -342771 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 167.75-88 chr8 50608807 50609179 + 0.75 NA intron (NR_135797, intron 15 of 20) L1ME1|LINE|L1 444862 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 255.25-13 chr2 34232684 34233168 + 0.75 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 165700 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 186.25-42 chr4 77188753 77189035 + 0.75 NA Intergenic Intergenic 31687 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 225.25-26 chr3 160629197 160629867 + 0.75 NA Intergenic Intergenic -47628 NM_025047 80117 Hs.287702 NM_025047 ENSG00000179674 ARL14 ARF7 ADP ribosylation factor like GTPase 14 protein-coding 193.5-44 chr3 79459540 79459960 + 0.75 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) 48023 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 167.5-14 chr10 83023342 83023757 + 0.75 NA Intergenic Intergenic 653540 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 197.75-23 chr15 82754700 82755179 + 0.75 NA TTS (NM_001281806) TTS (NM_001281806) -1006 NR_003011 677778 Hs.743895 NR_003011 ENSG00000277864 SCARNA15 ACA45 small Cajal body-specific RNA 15 ncRNA 206-17 chr2 100475010 100475585 + 0.75 NA intron (NM_001011717, intron 3 of 9) MIR1_Amn|SINE|MIR 4815 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 146.25-17 chr10 117453104 117453480 + 0.75 NA Intergenic L1ME3E|LINE|L1 -77852 NM_173791 118987 Hs.501149 NM_173791 ENSG00000165650 PDZD8 PDZK8 PDZ domain containing 8 protein-coding 334.75 chr1 190195727 190196478 + 0.75 NA intron (NM_199051, intron 6 of 7) intron (NM_199051, intron 6 of 7) 279908 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 275.5-20 chr6 49373207 49373791 + 0.75 NA Intergenic Intergenic 89754 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 179.25-33 chr15 64313895 64314140 + 0.75 NA intron (NM_001329606, intron 1 of 11) L2a|LINE|L2 42156 NM_001329606 53944 Hs.646508 NM_022048 ENSG00000169118 CSNK1G1 CK1gamma1 casein kinase 1 gamma 1 protein-coding 152.75-23 chr12 17751030 17751503 + 0.75 NA Intergenic Intergenic 77967 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 265.5-25 chr8 142140974 142141350 + 0.75 NA Intergenic Intergenic -35177 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 241-6 chr10 9319833 9320246 + 0.75 NA Intergenic Intergenic -24446 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 195-17 chr14 54793879 54794369 + 0.75 NA TTS (NM_001161577) TTS (NM_001161577) 39291 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 195.75-58 chr5 81584433 81584795 + 0.75 NA intron (NM_012446, intron 4 of 16) intron (NM_012446, intron 4 of 16) 166639 NM_001256732 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 153.25-19 chr10 115730976 115731304 + 0.75 NA intron (NM_207303, intron 27 of 28) MLT2A1|LTR|ERVL 463649 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 184.5-41 chr2 18246440 18246938 + 0.75 NA Intergenic Intergenic 313964 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 191.75-49 chr5 94534806 94535288 + 0.75 NA intron (NM_001145678, intron 3 of 20) intron (NM_001145678, intron 3 of 20) 83557 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 156.75-39 chr15 74702504 74702714 + 0.75 NA Intergenic L2|LINE|L2 -6585 NM_001142444 80153 Hs.96852 NM_025083 ENSG00000179151 EDC3 LSM16|MRT50|YJDC|YJEFN2|hYjeF_N2-15q23 enhancer of mRNA decapping 3 protein-coding 235.5-41 chr8 120656973 120657640 + 0.75 NA intron (NM_021021, intron 2 of 6) intron (NM_021021, intron 2 of 6) -103947 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 145.75-85 chr3 196963292 196963645 + 0.75 NA intron (NM_025163, intron 1 of 2) L1MB7|LINE|L1 5365 NM_025163 80235 Hs.518403 NM_025163 ENSG00000119227 PIGZ GPI-MT-IV|PIG-Z|SMP3 phosphatidylinositol glycan anchor biosynthesis class Z protein-coding 168.75-80 chr4 184088330 184088590 + 0.75 NA TTS (NM_153343) TTS (NM_153343) 129413 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 226.75-2 chr1 211431907 211432462 + 0.75 NA intron (NR_026761, intron 5 of 5) intron (NR_026761, intron 5 of 5) 49429 NR_026761 84791 Hs.523932 NM_032705 LINC00467 C1orf97 long intergenic non-protein coding RNA 467 ncRNA 148.5-10 chr1 236251362 236251809 + 0.75 NA intron (NM_019891, intron 4 of 15) intron (NM_019891, intron 4 of 15) 30373 NM_019891 56605 Hs.558519 NM_019891 ENSG00000086619 ERO1B ERO1LB|Ero1beta endoplasmic reticulum oxidoreductase 1 beta protein-coding 236.25-26 chr5 148980694 148981339 + 0.75 NA Intergenic Intergenic 81393 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 155.75-78 chr4 81503246 81503533 + 0.75 NA Intergenic Intergenic -31482 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 243.75-5 chr14 66886467 66886977 + 0.75 NA intron (NM_001024218, intron 5 of 21) L1M4c|LINE|L1 -302718 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 270-18 chr8 78738139 78738681 + 0.75 NA intron (NM_001199886, intron 3 of 4) intron (NM_001199886, intron 3 of 4) -14036 NR_077236 101241902 Hs.388511 NR_077236 LOC101241902 - chromosome 4 open reading frame 46 pseudogene pseudo 218-24 chr7 9672818 9673341 + 0.75 NA Intergenic Intergenic 38809 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 154.75-22 chr14 51329602 51330043 + 0.75 NA Intergenic Intergenic -1437 NR_145423 161342 NR_145423 ENSG00000258955 LINC00519 C14orf30|c14_5317 long intergenic non-protein coding RNA 519 ncRNA 208-29 chr5 54416948 54417276 + 0.75 NA Intergenic MER44A|DNA|TcMar-Tigger -38587 NM_006308 8988 Hs.41707 NM_006308 ENSG00000169271 HSPB3 DHMN2C|HMN2C|HSPL27 heat shock protein family B (small) member 3 protein-coding 188-10 chr10 37387176 37387557 + 0.75 NA Intergenic Intergenic 78180 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 185.75-43 chr2 215947210 215947605 + 0.75 NA intron (NM_018000, intron 2 of 4) MIR|SINE|MIR 66144 NM_018000 55686 Hs.620391 NM_018000 ENSG00000118242 MREG DSU|WDT2 melanoregulin protein-coding 226-30 chr7 27808844 27809412 + 0.75 NA intron (NM_001362795, intron 13 of 14) Charlie4a|DNA|hAT-Charlie 69033 NM_001206902 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 273-13 chr4 48951402 48951899 + 0.75 NA Intergenic MER51B|LTR|ERV1 -34625 NM_025087 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 343 chr12 9086257 9086972 + 0.75 NA intron (NM_000014, intron 22 of 35) L1MA7|LINE|L1 21437 NR_137424 144571 Hs.592432 NR_026971 ENSG00000245105 A2M-AS1 - A2M antisense RNA 1 ncRNA 230.75-34 chr5 90030417 90030798 + 0.75 NA Intergenic L1MB7|LINE|L1 -13887 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 191.25-7 chr1 103939127 103939421 + 0.75 NA Intergenic L3|LINE|CR1 -133749 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 213-37 chr9 75757343 75757775 + 0.75 NA Intergenic AluJr4|SINE|Alu -133085 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 277.5-8 chr2 96874877 96875420 + 0.75 NA TTS (NM_001172667) TTS (NM_001172667) -5068 NM_017789 54910 Hs.516220 NM_017789 ENSG00000168758 SEMA4C M-SEMA-F|SEMACL1|SEMAF|SEMAI semaphorin 4C protein-coding 242.5 chr1 104577548 104578002 + 0.75 NA Intergenic L1MEc|LINE|L1 504752 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 229-21 chr6 55194693 55195220 + 0.75 NA intron (NM_001526, intron 2 of 7) intron (NM_001526, intron 2 of 7) 88496 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 148.75-57 chr21 24083867 24084186 + 0.75 NA Intergenic Intergenic 237351 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 149.25-28 chr14 57147351 57147573 + 0.75 NA Intergenic Intergenic 121443 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 239-2 chr10 22750780 22751267 + 0.75 NA Intergenic Intergenic -36445 NM_005028 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 158-40 chr2 136048822 136049063 + 0.75 NA Intergenic LTR16A|LTR|ERVL -63258 NM_001293312 1615 Hs.503787 NM_001349 ENSG00000115866 DARS HBSL|aspRS aspartyl-tRNA synthetase protein-coding 272.5-3 chr10 85564630 85565047 + 0.75 NA Intergenic L1ME3A|LINE|L1 -12893 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 215.5 chr1 3670371 3670767 + 0.75 NA intron (NM_001204185, intron 1 of 12) AluSx|SINE|Alu 18004 NM_001204187 7161 Hs.192132 NM_005427 ENSG00000078900 TP73 P73 tumor protein p73 protein-coding 245.25-21 chr6 35689385 35689981 + 0.75 NA promoter-TSS (NM_004117) promoter-TSS (NM_004117) -741 NM_001145777 2289 Hs.407190 NM_004117 ENSG00000096060 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FKBP prolyl isomerase 5 protein-coding 238.75-34 chr9 7052975 7053600 + 0.75 NA intron (NM_001353997, intron 17 of 22) intron (NM_001353997, intron 17 of 22) 295937 NR_148679 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 269.25-12 chr2 210085566 210085993 + 0.75 NA intron (NM_001307976, intron 5 of 13) L1ME4a|LINE|L1 55857 NR_110291 101928020 Hs.635556 NR_110291 LOC101928020 - uncharacterized LOC101928020 ncRNA 146.25-68 chr3 181381702 181381981 + 0.75 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 60645 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 168-60 chr6 16605250 16605652 + 0.75 NA intron (NM_000332, intron 4 of 8) MIR3|SINE|MIR 154733 NR_152114 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 230.75-44 chr8 113038022 113038524 + 0.75 NA intron (NM_001363185, intron 5 of 66) intron (NM_001363185, intron 5 of 66) 338879 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 211.5-8 chr10 57778269 57778755 + 0.75 NA Intergenic Intergenic -473953 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 179.75-31 chr3 2199835 2200156 + 0.75 NA intron (NM_175607, intron 2 of 24) L2a|LINE|L2 -38834 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 194-57 chr8 139435118 139435519 + 0.75 NA Intergenic Intergenic 267805 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 184.25-58 chr5 133603146 133603444 + 0.75 NA intron (NM_015082, intron 2 of 15) MamRep434|DNA|TcMar-Tigger 9246 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 226.5-5 chr10 90927735 90928082 + 0.75 NA Intergenic Intergenic -6633 NM_014391 27063 Hs.448589 NM_014391 ENSG00000148677 ANKRD1 ALRP|C-193|CARP|CVARP|MCARP|bA320F15.2 ankyrin repeat domain 1 protein-coding 156.25-9 chr10 126653793 126654177 + 0.75 NA intron (NM_001350922, intron 1 of 8) Tigger1|DNA|TcMar-Tigger 16525 NR_146939 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 150.5-56 chr2 35348913 35349302 + 0.75 NA Intergenic Charlie25|DNA|hAT-Charlie -122298 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 219.75-13 chr12 92643395 92643827 + 0.75 NA Intergenic Intergenic -59232 NM_001037671 338809 Hs.326303 NM_001037671 ENSG00000187510 C12orf74 - chromosome 12 open reading frame 74 protein-coding 313.25-5 chr5 128064976 128065531 + 0.75 NA intron (NR_152810, intron 1 of 3) intron (NR_152810, intron 1 of 3) 17922 NR_152799 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 153.75-95 chr9 24610746 24611072 + 0.75 NA Intergenic Intergenic -65012 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 202.5-59 chr8 66251563 66252057 + 0.75 NA Intergenic MER34B|LTR|ERV1 59696 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 185.5-58 chr5 24323877 24324305 + 0.75 NA Intergenic Intergenic 320887 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 170.75-2 chr1 50634666 50634979 + 0.75 NA intron (NM_007051, intron 8 of 18) L2c|LINE|L2 -211379 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 289.25-25 chrUn_KI270515v1 1103 1733 + 0.75 NA NA ALR/Alpha|Satellite|centr NA NA 250-10 chr2 108535927 108536311 + 0.75 NA intron (NM_001193483, intron 1 of 9) intron (NM_001193483, intron 1 of 9) 1764 NM_001193483 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 146.5-94 chr6 131550865 131551175 + 0.75 NA Intergenic Intergenic -22206 NM_001244438 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 267-3 chr12 61044804 61045317 + 0.75 NA Intergenic Intergenic 1147779 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 157.25-81 chr6 54700786 54701061 + 0.75 NA Intergenic L1MD3|LINE|L1 -145848 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 290.5-5 chr12 12984570 12985372 + 0.75 NA TTS (NR_149062) TTS (NR_149062) 5134 NR_038920 100506314 Hs.127718 NR_038920 ENSG00000247498 GPRC5D-AS1 - GPRC5D and HEBP1 antisense RNA 1 ncRNA 210.25-8 chr11 87175596 87176177 + 0.75 NA intron (NR_033149, intron 4 of 13) intron (NR_033149, intron 4 of 13) 137952 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 206.5-14 chr14 52601154 52601512 + 0.75 NA intron (NM_001099652, intron 3 of 6) intron (NM_001099652, intron 3 of 6) 48497 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 193.75-49 chr4 145159801 145160334 + 0.75 NA intron (NM_017493, intron 6 of 6) MIRb|SINE|MIR 18091 NM_017493 54726 Hs.270851 NM_017493 ENSG00000164164 OTUD4 DUBA6|HIN1|HSHIN1 OTU deubiquitinase 4 protein-coding 154.5-18 chr11 81948970 81949188 + 0.75 NA intron (NR_120571, intron 6 of 7) intron (NR_120571, intron 6 of 7) -58243 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 148.25-21 chr12 52360813 52361113 + 0.75 NA exon (NM_001300810, exon 7 of 7) exon (NM_001300810, exon 7 of 7) 3659 NM_001300810 3891 Hs.182507 NM_002283 ENSG00000135443 KRT85 ECTD4|HB5|Hb-5|K85|KRTHB5|hHb5 keratin 85 protein-coding 312.5-11 chr8 130861600 130862309 + 0.75 NA intron (NM_001115, intron 9 of 17) L1MC3|LINE|L1 178955 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 311.75 chr1 179847199 179848148 + 0.75 NA intron (NM_001349934, intron 5 of 6) intron (NM_001349934, intron 5 of 6) 21167 NM_001349933 163590 Hs.571797 NM_022347 ENSG00000169905 TOR1AIP2 IFRG15|LULL1|NET9 torsin 1A interacting protein 2 protein-coding 237.5-33 chr8 93725678 93726134 + 0.75 NA intron (NR_104268, intron 7 of 8) intron (NR_104268, intron 7 of 8) -14205 NR_027259 55472 Hs.192788 NM_018608 ENSG00000279331 RBM12B-AS1 C8orf39|PRO1905 RBM12B antisense RNA 1 ncRNA 147.5-98 chr7 92641902 92642227 + 0.75 NA intron (NM_001259, intron 5 of 7) intron (NM_001259, intron 5 of 7) -51674 NR_109929 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 246.5-6 chr12 4454111 4454639 + 0.75 NA Intergenic L1MC1|LINE|L1 -8761 NM_020996 2251 Hs.166015 NM_020996 ENSG00000111241 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 361.25-6 chr6 155712868 155713645 + 0.75 NA Intergenic Intergenic 198412 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 170-12 chr11 25915824 25916102 + 0.75 NA Intergenic L1MB7|LINE|L1 -273160 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 163.5-102 chr6 128615732 128616119 + 0.75 NA Intergenic L1MB2|LINE|L1 -95326 NM_001291983 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 218.25-45 chr8 101938552 101938974 + 0.75 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -45669 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 161.75-44 chr3 18141218 18141625 + 0.75 NA intron (NR_161333, intron 4 of 4) intron (NR_161333, intron 4 of 4) 178869 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 173.25-83 chrX 153153614 153153992 + 0.75 NA Intergenic Intergenic -25481 NM_004988 4100 Hs.72879 NM_004988 ENSG00000198681 MAGEA1 CT1.1|MAGE1 MAGE family member A1 protein-coding 153.25-17 chr10 37865513 37865781 + 0.75 NA Intergenic Intergenic -7544 NM_001352477 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 264.5-5 chr12 72468123 72468658 + 0.75 NA intron (NM_013381, intron 3 of 18) L1ME3Cz|LINE|L1 -194881 NR_026836 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 218.25-3 chr1 201145840 201146162 + 0.75 NA intron (NR_109920, intron 4 of 6) intron (NR_109920, intron 4 of 6) 8473 NM_001288565 252839 Hs.181444 NM_016456 ENSG00000116857 TMEM9 DERM4|TMEM9A transmembrane protein 9 protein-coding 180-73 chr8 127011160 127011463 + 0.75 NA Intergenic Intergenic -1843 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 225.25-38 chr8 134062963 134063512 + 0.75 NA Intergenic L1MA7|LINE|L1 176741 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 280.25-4 chr12 68248129 68248610 + 0.75 NA 3' UTR (NM_020525, exon 6 of 6) 3' UTR (NM_020525, exon 6 of 6) 5235 NM_020525 50616 Hs.287369 NM_020525 ENSG00000127318 IL22 IL-21|IL-22|IL-D110|IL-TIF|ILTIF|TIFIL-23|TIFa|zcyto18 interleukin 22 protein-coding 250.75-27 chr6 110853821 110854212 + 0.75 NA intron (NM_001287215, intron 1 of 8) intron (NM_001287215, intron 1 of 8) 5470 NR_145728 109616968 NR_145728 ENSG00000212587 SNORA40C - small nucleolar RNA, H/ACA box 40C snoRNA 151.5-57 chr20 38109876 38110138 + 0.75 NA Intergenic Intergenic 55263 NM_004613 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 240.75-5 chr11 26380003 26380417 + 0.75 NA intron (NM_031418, intron 1 of 26) MIR|SINE|MIR 48080 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 168.25-52 chr4 112397090 112397435 + 0.75 NA intron (NM_001102406, intron 4 of 15) intron (NM_001102406, intron 4 of 15) 99893 NM_025144 80216 Hs.652825 NM_025144 ENSG00000073331 ALPK1 8430410J10Rik|LAK alpha kinase 1 protein-coding 168.75-107 chrX 50083656 50084008 + 0.75 NA intron (NM_001282163, intron 6 of 11) intron (NM_001282163, intron 6 of 11) 14331 NM_001282163 1184 Hs.166486 NM_000084 ENSG00000171365 CLCN5 CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2 chloride voltage-gated channel 5 protein-coding 172.5-82 chr8 84589776 84590073 + 0.75 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -116003 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 200-32 chr4 17826998 17827425 + 0.75 NA intron (NR_073124, intron 10 of 19) L2|LINE|L2 16232 NR_073124 64151 Hs.567567 NM_022346 ENSG00000109805 NCAPG CAPG|CHCG|NY-MEL-3|YCG1 non-SMC condensin I complex subunit G protein-coding 266.25 chr13 49718820 49719227 + 0.75 NA intron (NM_002267, intron 10 of 16) intron (NM_002267, intron 10 of 16) -27536 NR_103802 84650 Hs.433278 NM_032565 ENSG00000123179 EBPL EBRP EBP like protein-coding 185.5-53 chr4 140386717 140387087 + 0.75 NA Intergenic Intergenic 13392 NM_001153552 60592 Hs.480815 NM_032547 ENSG00000153130 SCOC HRIHFB2072|SCOCO|UNC-69 short coiled-coil protein protein-coding 199.75-31 chr2 148242137 148242763 + 0.75 NA intron (NM_018328, intron 4 of 14) intron (NM_018328, intron 4 of 14) -220846 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 146-98 chr8 132768644 132768941 + 0.75 NA Intergenic Intergenic -6566 NM_001362971 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 196.25-45 chr5 37664896 37665323 + 0.75 NA intron (NM_001345998, intron 10 of 17) intron (NM_001345998, intron 10 of 17) 169713 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 245.25-8 chr12 127842967 127843458 + 0.75 NA Intergenic Intergenic -38405 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 160-27 chr16 73491306 73491800 + 0.75 NA Intergenic Intergenic 104748 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 155.5-79 chr5 6304992 6305402 + 0.75 NA Intergenic Intergenic 32095 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 201.25-45 chr7 21115967 21116267 + 0.75 NA Intergenic Intergenic 280686 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 155-21 chr12 18950047 18950522 + 0.75 NA Intergenic Intergenic -179449 NM_001256470 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 215.75-9 chr12 86790053 86790561 + 0.75 NA intron (NM_001351286, intron 1 of 7) intron (NM_001351286, intron 1 of 7) -45158 NR_162123 113839519 NR_162123 MIR3059 - microRNA 3059 ncRNA 207-40 chr5 108973717 108974122 + 0.75 NA intron (NR_146155, intron 13 of 19) intron (NR_146155, intron 13 of 19) 49313 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 149.5-15 chr11 55944478 55944785 + 0.75 NA Intergenic (AATTTAA)n|Simple_repeat|Simple_repeat -8231 NM_006637 10798 Hs.533706 NM_006637 ENSG00000167825 OR5I1 HSOlf1|OLF1 olfactory receptor family 5 subfamily I member 1 protein-coding 203.25-34 chr5 38860023 38860471 + 0.75 NA intron (NM_003999, intron 1 of 17) L1MA4A|LINE|L1 14235 NM_001323506 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 170 chr1 29385157 29385519 + 0.75 NA Intergenic MLT1H1|LTR|ERVL-MaLR -35224 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 169.75-21 chr11 96264570 96264977 + 0.75 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -76665 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 190.25-44 chr6 136462268 136462799 + 0.75 NA intron (NM_001198617, intron 1 of 15) intron (NM_001198617, intron 1 of 15) 4342 NM_001198615 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 206.25-41 chr7 113942191 113942809 + 0.75 NA Intergenic L1ME3A|LINE|L1 -23491 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 225-9 chr2 118640743 118641253 + 0.75 NA Intergenic MLT1L|LTR|ERVL-MaLR -38032 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 171.5-5 chr1 98565217 98565631 + 0.75 NA Intergenic Intergenic -96297 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 262.75-15 chr20 1513530 1514182 + 0.75 NA Intergenic Intergenic -22436 NM_001122962 284759 Hs.721685 NM_001122962 ENSG00000196209 SIRPB2 PTPN1L|PTPNS1L3|dJ776F14.2 signal regulatory protein beta 2 protein-coding 178.5-53 chr5 21103973 21104276 + 0.75 NA Intergenic Intergenic -355356 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 255.25-11 chr17 59675905 59676317 + 0.75 NA intron (NM_001288653, intron 16 of 31) AluJb|SINE|Alu 31487 NM_001015509 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 270.5-17 chr6 142492081 142492721 + 0.75 NA Intergenic L1PREC2|LINE|L1 145435 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 171-67 chr8 69116604 69116886 + 0.75 NA Intergenic L2a|LINE|L2 -12555 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 171.5-103 chr8 136444240 136444547 + 0.75 NA Intergenic MLT2C1|LTR|ERVL -86405 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 212.25-37 chr5 158778886 158779395 + 0.75 NA intron (NM_001324107, intron 9 of 15) intron (NM_001324107, intron 9 of 15) 318816 NM_001364159 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 285-5 chr6 65598430 65598889 + 0.75 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) -18855 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 256.5-11 chr21 26947952 26948361 + 0.75 NA intron (NM_007038, intron 2 of 7) intron (NM_007038, intron 2 of 7) -5805 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 173.25-14 chr12 2034311 2034699 + 0.75 NA Intergenic Intergenic -13847 NR_046768 100874369 Hs.208723 NR_046768 ENSG00000256257 CACNA1C-IT2 - CACNA1C intronic transcript 2 ncRNA 198.5-21 chr14 87403255 87403785 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR 251774 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 151.75-13 chr11 14624022 14624382 + 0.75 NA intron (NM_148976, intron 1 of 10) ERV3-16A3_I-int|LTR|ERVL 19432 NM_148976 5682 Hs.102798 NM_002786 ENSG00000129084 PSMA1 HC2|HEL-S-275|NU|PROS30 proteasome subunit alpha 1 protein-coding 263.25-12 chr20 15971597 15971956 + 0.75 NA intron (NM_001351663, intron 13 of 17) LTR40b|LTR|ERVL 14106 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 183.75-61 chr3 85313140 85313516 + 0.75 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -72382 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 160.5-122 chrX 145494030 145494320 + 0.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 246672 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 183.25-18 chr13 72737488 72737862 + 0.75 NA intron (NM_024808, intron 4 of 11) intron (NM_024808, intron 4 of 11) 9752 NM_001366664 79866 Hs.643464 NM_024808 ENSG00000136122 BORA C13orf34 BORA aurora kinase A activator protein-coding 187.25-32 chr2 123140 123436 + 0.75 NA Intergenic Intergenic -76783 NM_001077710 642273 Hs.8379 NM_001077710 ENSG00000184731 FAM110C - family with sequence similarity 110 member C protein-coding 212-8 chr11 108893087 108893483 + 0.75 NA intron (NM_004398, intron 16 of 17) intron (NM_004398, intron 16 of 17) 228216 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 319 chr1 212154849 212155686 + 0.75 NA Intergenic MLT1A|LTR|ERVL-MaLR 77654 NR_036068 100422947 NR_036068 ENSG00000264358 MIR3122 mir-3122 microRNA 3122 ncRNA 154-25 chr12 109360673 109360984 + 0.75 NA Intergenic Intergenic -1340 NR_120462 101928138 Hs.143843 NR_120462 ENSG00000256560 LINC01486 - long intergenic non-protein coding RNA 1486 ncRNA 181-48 chr8 57859367 57859729 + 0.75 NA Intergenic MER103C|DNA|hAT-Charlie 113399 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 224.75-29 chr5 5696724 5697202 + 0.75 NA Intergenic MER61-int|LTR|ERV1 274286 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 190.5-15 chr14 53189754 53190134 + 0.75 NA Intergenic Intergenic 36590 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 191.75-23 chr14 63742620 63742947 + 0.75 NA Intergenic Intergenic -14718 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 223 chr1 100812498 100812892 + 0.75 NA Intergenic Intergenic 82147 NM_001033025 2135 Hs.357637 NM_001439 ENSG00000162694 EXTL2 EXTR2 exostosin like glycosyltransferase 2 protein-coding 168.5-16 chr10 89742539 89743042 + 0.75 NA intron (NM_016195, intron 21 of 32) AluSc8|SINE|Alu 41200 NM_016195 9585 Hs.240 NM_016195 ENSG00000138182 KIF20B CT90|KRMP1|MPHOSPH1|MPP-1|MPP1 kinesin family member 20B protein-coding 189-51 chr5 155556122 155556458 + 0.75 NA Intergenic L1M5|LINE|L1 542535 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 179.5-36 chr2 40970186 40970615 + 0.75 NA Intergenic Intergenic -457965 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 155-100 chr8 31026380 31026793 + 0.75 NA intron (NM_001323312, intron 2 of 2) intron (NM_001323312, intron 2 of 2) 6215 NM_013357 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 240.25 chr1 169774682 169775188 + 0.75 NA Intergenic L1M5|LINE|L1 19754 NM_001320201 92342 Hs.33922 NM_033418 ENSG00000171806 METTL18 AsTP2|C1orf156|HPM1 methyltransferase like 18 protein-coding 194.5-25 chr15 90251634 90251995 + 0.75 NA intron (NR_104604, intron 3 of 9) intron (NR_104604, intron 3 of 9) 2282 NR_104604 440307 Hs.632164 NM_001029964 ENSG00000213471 TTLL13P TTLL13 tubulin tyrosine ligase like 13, pseudogene pseudo 180.75-45 chr3 190704001 190704613 + 0.75 NA Intergenic Intergenic 158387 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 195.5-67 chr8 70146318 70146733 + 0.75 NA intron (NM_001321703, intron 12 of 22) intron (NM_001321703, intron 12 of 22) -75273 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 277.5-10 chr2 200294605 200295022 + 0.75 NA Intergenic Intergenic -11066 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 145.75-108 chr7 12435019 12435332 + 0.75 NA Intergenic Intergenic -31234 NM_001346972 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 317.25-2 chr15 39174762 39175428 + 0.75 NA Intergenic L2c|LINE|L2 -75574 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 287.5-9 chr16 1400557 1401328 + 0.75 NA intron (NR_160278, intron 4 of 15) AluSx1|SINE|Alu 13762 NM_001037125 64718 Hs.643536 NM_001037125 ENSG00000059145 UNKL C16orf28|ZC3H5L|ZC3HDC5L unk like zinc finger protein-coding 190.75-43 chr3 94253477 94253876 + 0.75 NA Intergenic Intergenic 190615 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 156-46 chr20 48966174 48966418 + 0.75 NA intron (NM_006420, intron 8 of 38) intron (NM_006420, intron 8 of 38) 44585 NM_006420 10564 Hs.62578 NM_006420 ENSG00000124198 ARFGEF2 BIG2|PVNH2|dJ1164I10.1 ADP ribosylation factor guanine nucleotide exchange factor 2 protein-coding 197.25-15 chr13 87345467 87345846 + 0.75 NA Intergenic Intergenic 273084 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 186-12 chr15 62931364 62931783 + 0.75 NA Intergenic L1ME3B|LINE|L1 107616 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 171-68 chr8 77405088 77405367 + 0.75 NA Intergenic Intergenic -45470 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 231.75-13 chr18 11554458 11555053 + 0.75 NA Intergenic Tigger7|DNA|TcMar-Tigger -54803 NM_001282300 646000 NM_001282300 ENSG00000236396 SLC35G4 AMAC1L1|SLC35G4P solute carrier family 35 member G4 protein-coding 214.5-41 chr6 67962613 67963045 + 0.75 NA Intergenic Intergenic -92522 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 158.75-81 chr8 87519773 87520119 + 0.75 NA Intergenic L1MC2|LINE|L1 354069 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 217.5-15 chr14 49957533 49958161 + 0.75 NA Intergenic MIR|SINE|MIR -8552 NR_106724 102464828 NR_106724 ENSG00000278038 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 191.25-42 chr2 209183626 209184223 + 0.75 NA Intergenic L1MA8|LINE|L1 -240123 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 202-46 chr6 82786431 82786848 + 0.75 NA Intergenic Intergenic 279202 NR_146809 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 242.25-22 chr8 134117113 134117634 + 0.75 NA Intergenic Intergenic 230877 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 177.5-19 chr14 63053148 63053413 + 0.75 NA Intergenic L2|LINE|L2 -7822 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 226-4 chr10 86600419 86601014 + 0.75 NA Intergenic Intergenic -53831 NM_033282 94233 Hs.283922 NM_033282 ENSG00000122375 OPN4 MOP opsin 4 protein-coding 191.25-61 chr7 119878311 119878623 + 0.75 NA intron (NR_131960, intron 1 of 4) intron (NR_131960, intron 1 of 4) 28908 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 180-63 chr7 88176539 88177103 + 0.75 NA intron (NM_001324421, intron 26 of 28) AluSz6|SINE|Alu -39839 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 230.5-30 chr7 3516348 3516831 + 0.75 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 215337 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 161.75-91 chr8 120252447 120252738 + 0.75 NA intron (NM_021110, intron 22 of 47) MIRb|SINE|MIR 127490 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 276.75-16 chr7 110883854 110884304 + 0.75 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -206927 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 197.75-20 chr14 53466777 53467064 + 0.75 NA Intergenic L1M1|LINE|L1 313566 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 162-23 chr14 20074635 20074912 + 0.75 NA Intergenic L1MA8|LINE|L1 14728 NM_001004717 122742 Hs.553574 NM_001004717 ENSG00000176246 OR4L1 OR14-28|OR4L2P olfactory receptor family 4 subfamily L member 1 protein-coding 153-36 chr2 97349151 97349639 + 0.75 NA Intergenic Intergenic 65460 NR_103733 100506076 Hs.732616 NR_103732 LOC100506076 - uncharacterized LOC100506076 ncRNA 212-12 chr14 81361243 81361668 + 0.75 NA intron (NM_001366849, intron 5 of 8) L1MA7|LINE|L1 66320 NM_001256430 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 206.5-50 chr8 134383503 134383857 + 0.75 NA Intergenic Intergenic -214391 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 196-20 chr16 58579216 58579661 + 0.75 NA intron (NM_206999, intron 12 of 30) L1MC5a|LINE|L1 -19507 NR_002980 677830 Hs.677515 NR_002980 ENSG00000281910 SNORA50A ACA50|SNORA50|SNORA76A small nucleolar RNA, H/ACA box 50A snoRNA 274-5 chr11 97772378 97773045 + 0.75 NA Intergenic Intergenic -1248238 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 150-49 chr20 58951279 58951621 + 0.75 NA Intergenic L1PB1|LINE|L1 -29806 NM_198976 51497 Hs.517148 NM_016397 ENSG00000101158 NELFCD HSPC130|NELF-C|NELF-D|TH1|TH1L negative elongation factor complex member C/D protein-coding 232.25-4 chr1 160323416 160323897 + 0.75 NA intron (NM_001098398, intron 7 of 32) intron (NM_001098398, intron 7 of 32) 6391 NR_002190 474338 Hs.621179 NR_002190 SUMO1P3 - SUMO1 pseudogene 3 pseudo 314.5-3 chr13 65022755 65023674 + 0.75 NA Intergenic L1PA15|LINE|L1 -842833 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 226.25-35 chr9 34339029 34339705 + 0.75 NA intron (NM_147173, intron 3 of 3) intron (NM_147173, intron 3 of 3) 9798 NM_147172 318 Hs.493767 NM_001161 ENSG00000164978 NUDT2 APAH1 nudix hydrolase 2 protein-coding 169-71 chr8 123913047 123913524 + 0.75 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 61298 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 260.5-3 chr11 81915036 81915733 + 0.75 NA intron (NR_120571, intron 6 of 7) MLT1N2|LTR|ERVL-MaLR -24548 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 283.5-15 chr5 11983011 11983492 + 0.75 NA Intergenic Intergenic -78805 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 219.5-26 chr7 12522301 12523033 + 0.75 NA intron (NR_136263, intron 1 of 3) L2a|LINE|L2 18270 NR_136263 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 291.75-7 chr5 79295726 79296262 + 0.75 NA intron (NM_152405, intron 4 of 10) MIR|SINE|MIR 59863 NM_152405 133746 Hs.482605 NM_152405 ENSG00000152409 JMY WHAMM2|WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 257.5-15 chr20 54551420 54551829 + 0.75 NA intron (NM_018431, intron 1 of 7) L1MD1|LINE|L1 76031 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 211.75-48 chr9 103911895 103912434 + 0.75 NA Intergenic Intergenic -87545 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 190.5-5 chr10 6610993 6611482 + 0.75 NA Intergenic LTR50|LTR|ERVL -7479 NR_120634 101928150 Hs.576825 NR_120634 LINC02648 - long intergenic non-protein coding RNA 2648 ncRNA 165.75-45 chr2 115347153 115347531 + 0.75 NA intron (NM_001321912, intron 4 of 25) MER39|LTR|ERV1 3527 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 180.25-41 chr21 29366270 29366564 + 0.75 NA Intergenic Intergenic -6084 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 251.75-4 chr11 42498196 42498773 + 0.75 NA Intergenic Intergenic -244794 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 169.5-97 chr8 133019479 133019720 + 0.75 NA intron (NM_003235, intron 38 of 47) intron (NM_003235, intron 38 of 47) 26982 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 211-21 chr2 221217910 221218255 + 0.75 NA Intergenic Intergenic 354222 NM_004438 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 191-37 chr4 118186790 118187206 + 0.75 NA intron (NM_004784, intron 6 of 13) MER57A-int|LTR|ERV1 -91764 NR_034010 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 ncRNA 309-3 chr16 52923709 52924319 + 0.75 NA Intergenic L1MA8|LINE|L1 128859 NR_136518 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 304.5-13 chr8 135128264 135128993 + 0.75 NA Intergenic Intergenic -105503 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 229.75-21 chr3 143911432 143911829 + 0.75 NA Intergenic L1MA2|LINE|L1 -60168 NM_001363944 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 227.75 chr1 46103324 46103854 + 0.75 NA intron (NM_001303427, intron 1 of 9) intron (NM_001303427, intron 1 of 9) 27084 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 232.75-25 chr4 63122955 63123519 + 0.75 NA Intergenic Intergenic -961472 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 189.25-50 chr6 160509693 160510066 + 0.75 NA intron (NR_028092, intron 1 of 9) LTR36|LTR|ERV1 1245 NR_028093 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 151.25-51 chr20 16944957 16945394 + 0.75 NA Intergenic Intergenic 196822 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 180.25-13 chr12 1338141 1338608 + 0.75 NA intron (NR_027948, intron 15 of 19) L1PA13|LINE|L1 -162117 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 303.25-9 chr4 147592252 147592811 + 0.75 NA Intergenic Intergenic -24866 NM_018241 55751 Hs.203896 NM_018241 ENSG00000164168 TMEM184C TMEM34 transmembrane protein 184C protein-coding 264.75-15 chr5 125827431 125827973 + 0.75 NA Intergenic (AGAT)n|Simple_repeat|Simple_repeat 334441 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 301-12 chr9 8877110 8877610 + 0.75 NA intron (NM_002839, intron 11 of 45) intron (NM_002839, intron 11 of 45) 19342 NR_121599 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 263.25-14 chr3 155565753 155566220 + 0.75 NA intron (NM_001349252, intron 7 of 24) AluSx|SINE|Alu 80183 NR_146955 100874036 Hs.128933 NR_146955 ENSG00000242925 PLCH1-AS2 - PLCH1 antisense RNA 2 ncRNA 161.75-17 chr14 49344946 49345258 + 0.75 NA Intergenic AluJb|SINE|Alu 241278 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 157-43 chr18 4525416 4525698 + 0.75 NA Intergenic L1MA2|LINE|L1 -70250 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 206-12 chr16 75847961 75848571 + 0.75 NA Intergenic L1MD1|LINE|L1 -121776 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 163-63 chr5 18228617 18228858 + 0.75 NA Intergenic Intergenic 421463 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 164.75-53 chr3 95986290 95986584 + 0.75 NA Intergenic Charlie1a|DNA|hAT-Charlie -303244 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 222-30 chrUn_KI270438v1 105473 106010 + 0.75 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 203.5-61 chr6 55559551 55559977 + 0.75 NA intron (NR_109867, intron 1 of 3) intron (NR_109867, intron 1 of 3) 19450 NM_001287753 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 211.5-5 chr1 110405779 110406279 + 0.75 NA intron (NM_006402, intron 2 of 3) MIRb|SINE|MIR -1780 NR_102697 101410535 Hs.559121 NR_102697 LAMTOR5-AS1 - LAMTOR5 antisense RNA 1 ncRNA 241.75-31 chrX 99533714 99534062 + 0.75 NA Intergenic HAL1ME|LINE|L1 876385 NM_001105243 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 392.75-2 chr14 66579457 66580519 + 0.75 NA intron (NM_001024218, intron 1 of 21) L1M1|LINE|L1 72581 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 164.25-57 chr3 84908146 84908405 + 0.75 NA Intergenic Intergenic 26185 NR_147147 105377192 NR_147147 ENSG00000242339 LINC02025 - long intergenic non-protein coding RNA 2025 ncRNA 194.75-35 chr4 93877142 93877492 + 0.75 NA Intergenic Intergenic 48564 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 230-32 chr8 127867630 127868189 + 0.75 NA intron (NR_003367, intron 1 of 8) intron (NR_003367, intron 1 of 8) 71947 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 365.5-2 chr12 61728771 61729326 + 0.75 NA intron (NM_178539, intron 4 of 4) L1PB2|LINE|L1 463791 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 308-8 chr8 17126187 17126927 + 0.75 NA Intergenic Intergenic -29925 NM_016353 51201 Hs.728241 NM_016353 ENSG00000104219 ZDHHC2 DHHC2|ZNF372 zinc finger DHHC-type containing 2 protein-coding 330-8 chr7 77895397 77896209 + 0.75 NA intron (NM_001127357, intron 3 of 17) intron (NM_001127357, intron 3 of 17) 55673 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 147.25-103 chr9 89989690 89989996 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR 20427 NR_109791 101927847 Hs.584312 NR_109791 LOC101927847 - uncharacterized LOC101927847 ncRNA 265-11 chr4 91805339 91805814 + 0.75 NA Intergenic Intergenic 471726 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 215.25 chr1 9677587 9678213 + 0.75 NA intron (NR_126367, intron 1 of 1) AluSq2|SINE|Alu 9674 NR_126366 101929074 Hs.661762 NR_126366 ENSG00000231789 PIK3CD-AS2 - PIK3CD antisense RNA 2 ncRNA 233.5-26 chr5 97260880 97261388 + 0.75 NA Intergenic Intergenic -77887 NM_001159749 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 155.5-65 chr3 97318319 97318544 + 0.75 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -121176 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 163.75-38 chr22 34638000 34638310 + 0.75 NA Intergenic Intergenic 359761 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 167-94 chr9 30779068 30779369 + 0.75 NA Intergenic Intergenic -370764 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 172.25-52 chr4 73167989 73168236 + 0.75 NA intron (NM_032217, intron 2 of 33) AluYm1|SINE|Alu 54945 NM_001286771 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 172-30 chr16 78993918 78994218 + 0.75 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 606669 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 190.5-41 chr3 193975807 193976264 + 0.75 NA intron (NR_033944, intron 1 of 2) intron (NR_033944, intron 1 of 2) 18203 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 161.25-4 chr1 189774889 189775289 + 0.75 NA Intergenic MLT1K|LTR|ERVL-MaLR 700921 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 263.75 chr1 72345961 72346361 + 0.75 NA Intergenic MLT1E3|LTR|ERVL-MaLR -63622 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 155.25-48 chr2 213414589 213414878 + 0.75 NA intron (NR_047660, intron 8 of 14) intron (NR_047660, intron 8 of 14) 130269 NM_024532 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 186.75-73 chr5 148628194 148628694 + 0.75 NA intron (NM_001040172, intron 1 of 5) intron (NM_001040172, intron 1 of 5) 8617 NM_001040172 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 155.75-89 chr6 56943125 56943499 + 0.75 NA intron (NM_001144769, intron 2 of 96) Charlie29a|DNA|hAT-Charlie 11518 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 209.5-39 chr5 46216727 46217312 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -520639 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 247.5-30 chr6 115056490 115056917 + 0.75 NA Intergenic Intergenic 587132 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 233-27 chr5 159772465 159773017 + 0.75 NA Intergenic Intergenic 98643 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 251.75-21 chr4 81672081 81672459 + 0.75 NA Intergenic Intergenic -200363 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 282-2 chr11 81355077 81355590 + 0.75 NA Intergenic Intergenic 535503 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 200-20 chr14 76325311 76325633 + 0.75 NA Intergenic Intergenic -45875 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 145.75-72 chr3 18299033 18299348 + 0.75 NA Intergenic L1MA4A|LINE|L1 126149 NM_002971 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 161.5-57 chr22 34986623 34986957 + 0.75 NA intron (NR_138042, intron 1 of 4) L1MEg|LINE|L1 11126 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 264.75-25 chr8 120762616 120763172 + 0.75 NA intron (NR_125419, intron 1 of 4) intron (NR_125419, intron 1 of 4) 1641 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 185.5-2 chr1 42521798 42522242 + 0.75 NA intron (NM_001355227, intron 6 of 18) MER2|DNA|TcMar-Tigger -11000 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 281.75-10 chr3 105341112 105341736 + 0.75 NA Intergenic Intergenic -25289 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 212.75-10 chr15 76346497 76347081 + 0.75 NA Intergenic CpG 10016 NM_145805 64843 Hs.444677 NM_145805 ENSG00000159556 ISL2 - ISL LIM homeobox 2 protein-coding 213.5-13 chr12 43887047 43887506 + 0.75 NA intron (NM_001286213, intron 2 of 6) intron (NM_001286213, intron 2 of 6) 51195 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 146.25-11 chr10 31896418 31896716 + 0.75 NA intron (NM_001270696, intron 3 of 17) intron (NM_001270696, intron 3 of 17) 12359 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 185-60 chr5 121526161 121526674 + 0.75 NA Intergenic L1MA8|LINE|L1 203867 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 191 chr1 28937812 28938247 + 0.75 NA intron (NM_001166006, intron 1 of 14) L1MC3|LINE|L1 23453 NM_001166006 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 159.5-37 chr19 56592795 56593084 + 0.75 NA Intergenic L1MB1|LINE|L1 -2357 NM_021216 58491 Hs.301431 NM_021216 ENSG00000197951 ZNF71 EZFIT zinc finger protein 71 protein-coding 199.25-41 chr22 26955567 26956216 + 0.75 NA Intergenic AluSx1|SINE|Alu 52599 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 166-59 chr5 109736589 109736996 + 0.75 NA intron (NM_002372, intron 4 of 21) intron (NM_002372, intron 4 of 21) 47426 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 146.5-65 chr20 49705018 49705385 + 0.75 NA intron (NM_004776, intron 1 of 8) intron (NM_004776, intron 1 of 8) 8677 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 198.25-56 chr8 51066112 51066671 + 0.75 NA Intergenic L1MC3|LINE|L1 743054 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 170-58 chr7 38484592 38484974 + 0.75 NA intron (NM_001635, intron 5 of 20) L1MB1|LINE|L1 143206 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 152-50 chr3 18893518 18893921 + 0.75 NA Intergenic Intergenic -254791 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 167.75-69 chr5 8313162 8313524 + 0.75 NA Intergenic Intergenic 144221 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 187-14 chr17 48257761 48258295 + 0.75 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) -36319 NR_131240 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 216.25-17 chr19 43315400 43315928 + 0.75 NA Intergenic HERVIP10F-int|LTR|ERV1 -33392 NR_026881 23574 Hs.721578 NR_026881 PRG1 - p53-responsive gene 1 ncRNA 210-39 chr3 133471143 133471551 + 0.75 NA intron (NM_003571, intron 5 of 6) intron (NM_003571, intron 5 of 6) -15571 NR_135278 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 165-82 chr7 86360747 86361156 + 0.75 NA Intergenic LTR48B|LTR|ERV1 -282958 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 220.75-4 chr11 114398112 114398740 + 0.75 NA TTS (NM_001271562) TTS (NM_001271562) 2085 NM_001271562 54494 Hs.715083 NM_019021 ENSG00000180425 C11orf71 URLC7 chromosome 11 open reading frame 71 protein-coding 222-27 chr8 76927596 76928041 + 0.75 NA Intergenic Intergenic 39032 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 214-22 chr20 54165436 54165839 + 0.75 NA intron (NM_000782, intron 5 of 11) MER113A|DNA|hAT-Charlie 8349 NM_001128915 1591 Hs.89663 NM_000782 ENSG00000019186 CYP24A1 CP24|CYP24|HCAI|HCINF1|P450-CC24 cytochrome P450 family 24 subfamily A member 1 protein-coding 262-11 chr8 121073530 121074182 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR -261810 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 276.25-16 chr8 137029381 137030049 + 0.75 NA Intergenic Intergenic 383873 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 164.75-59 chr4 55983791 55984173 + 0.75 NA intron (NM_025009, intron 13 of 25) MIR|SINE|MIR 35037 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 172-39 chr2 85103511 85103801 + 0.75 NA Intergenic L1MB7|LINE|L1 -29736 NM_031283 83439 Hs.516297 NM_031283 ENSG00000152284 TCF7L1 TCF-3|TCF3 transcription factor 7 like 1 protein-coding 154-2 chr1 29874709 29875020 + 0.75 NA Intergenic L1MDb|LINE|L1 162748 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 233.25-20 chr21 34723487 34724101 + 0.75 NA TTS (NR_024351) TTS (NR_024351) 13388 NR_024351 54064 Hs.436868 NR_024351 ENSG00000230978 LINC00160 C21orf52|NCRNA00160 long intergenic non-protein coding RNA 160 ncRNA 259.25-10 chr5 77605708 77606435 + 0.75 NA Intergenic Intergenic 32626 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 233-28 chr5 167424970 167425568 + 0.75 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -148390 NM_001368146 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 187.75-46 chr3 17523665 17524168 + 0.75 NA intron (NM_001349075, intron 1 of 22) MER106A|DNA|hAT-Charlie 176104 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 146.5-73 chr4 58798447 58798691 + 0.75 NA Intergenic Intergenic -185713 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 237-18 chr7 120344214 120344657 + 0.75 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 71260 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 160.25-67 chr6 165240065 165240469 + 0.75 NA Intergenic Intergenic 69338 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 178.75-34 chr2 225848656 225848978 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -293977 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 174.25-81 chrX 34263819 34264265 + 0.75 NA Intergenic Intergenic -131712 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 222.5-42 chr5 18957341 18957682 + 0.75 NA Intergenic Intergenic 928761 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 259.5-4 chr11 77516596 77517145 + 0.75 NA Intergenic AluJo|SINE|Alu -42807 NM_002576 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 158.25-98 chr7 4551528 4551898 + 0.75 NA Intergenic L2a|LINE|L2 -130582 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 192.75-35 chr21 23475601 23476024 + 0.75 NA Intergenic L2a|LINE|L2 -90977 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 182.25-42 chr5 40745975 40746278 + 0.75 NA intron (NM_012382, intron 2 of 4) L1M2|LINE|L1 9835 NM_012382 23548 Hs.348915 NM_012382 ENSG00000113638 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 154.25-89 chr8 121384922 121385249 + 0.75 NA Intergenic Intergenic -254261 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 197.5-43 chr3 97787721 97788160 + 0.75 NA intron (NR_136602, intron 5 of 7) intron (NR_136602, intron 5 of 7) 23182 NM_001323513 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 233-11 chr14 52783461 52784035 + 0.75 NA intron (NM_198066, intron 2 of 5) intron (NM_198066, intron 2 of 5) 7859 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 201.5-36 chr3 36420880 36421398 + 0.75 NA intron (NM_001292049, intron 1 of 8) intron (NM_001292049, intron 1 of 8) 40652 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 149.75-53 chr3 19911274 19911553 + 0.75 NA intron (NM_001330688, intron 7 of 14) AluSx1|SINE|Alu 22804 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 197.75-26 chr17 73208487 73209024 + 0.75 NA TTS (NM_018714) TTS (NM_018714) 15700 NM_018714 9382 Hs.103555 NM_018714 ENSG00000166685 COG1 CDG2G|LDLB component of oligomeric golgi complex 1 protein-coding 214.75-40 chr5 107376117 107376462 + 0.75 NA TTS (NM_001962) TTS (NM_001962) 294648 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 204-32 chr4 43875379 43875705 + 0.75 NA Intergenic Intergenic -141319 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 213.75-17 chr3 21999975 22000464 + 0.75 NA Intergenic AluY|SINE|Alu 43080 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 171.25-36 chr21 30751580 30751925 + 0.75 NA Intergenic MER33|DNA|hAT-Charlie 3676 NM_181619 337977 Hs.567837 NM_181619 ENSG00000187005 KRTAP21-1 KAP21.1 keratin associated protein 21-1 protein-coding 245.25 chr1 97629093 97629619 + 0.75 NA intron (NM_000110, intron 8 of 22) intron (NM_000110, intron 8 of 22) -167565 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 157.25-38 chr17 80598567 80599001 + 0.75 NA intron (NM_020761, intron 1 of 33) intron (NM_020761, intron 1 of 33) 53946 NM_020761 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 147.75-97 chr6 126957703 126958018 + 0.75 NA Intergenic Intergenic -160811 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 183.25-22 chr14 68563727 68564018 + 0.75 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 64915 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 210.75-44 chrX 116219851 116220280 + 0.75 NA Intergenic Intergenic 49321 NM_000686 186 Hs.405348 NM_000686 ENSG00000180772 AGTR2 AT2|ATGR2|MRX88 angiotensin II receptor type 2 protein-coding 271.5-5 chr13 61887831 61888382 + 0.75 NA Intergenic Intergenic 141442 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 311.5-7 chr2 17775829 17776547 + 0.75 NA intron (NM_182625, intron 11 of 13) L1MC4|LINE|L1 22050 NM_001130009 348654 Hs.467793 NM_182625 ENSG00000178295 GEN1 Gen GEN1 Holliday junction 5' flap endonuclease protein-coding 206.5-21 chr2 114963958 114964468 + 0.75 NA intron (NM_001321910, intron 2 of 26) MIRc|SINE|MIR -100360 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 221.5-11 chr11 82582556 82583009 + 0.75 NA Intergenic Intergenic 151082 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 169-4 chr1 190637948 190638394 + 0.75 NA intron (NR_033922, intron 1 of 4) intron (NR_033922, intron 1 of 4) 13281 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 195-5 chr1 231987302 231987703 + 0.75 NA intron (NM_001164538, intron 10 of 10) intron (NM_001164538, intron 10 of 10) 61668 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 181-6 chr10 119925461 119925973 + 0.75 NA intron (NM_007190, intron 12 of 18) AluJr|SINE|Alu -32796 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 166.5-18 chr14 43010027 43010327 + 0.75 NA Intergenic Intergenic 1403321 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 214.75-37 chr5 55312643 55312937 + 0.75 NA intron (NM_015360, intron 1 of 26) L1MC5a|LINE|L1 4801 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 250.75-7 chr14 45519373 45519907 + 0.75 NA Intergenic Intergenic 195962 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 170.75-27 chr2 27344838 27345220 + 0.75 NA intron (NM_001035521, intron 1 of 18) AluJr|SINE|Alu 9487 NR_038427 100505624 Hs.666503 NR_038427 ENSG00000234945 GTF3C2-AS1 - GTF3C2 antisense RNA 1 ncRNA 166.25-44 chr3 163274537 163274774 + 0.75 NA intron (NR_033945, intron 2 of 6) intron (NR_033945, intron 2 of 6) 28646 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 194-35 chr4 57843423 57843858 + 0.75 NA Intergenic Intergenic 417768 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 192-30 chr2 118538000 118538492 + 0.75 NA Intergenic Intergenic 64720 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 154-39 chr17 59051160 59051512 + 0.75 NA intron (NR_148346, intron 13 of 23) intron (NR_148346, intron 13 of 23) 55544 NM_001353085 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 172-59 chr4 45706412 45706730 + 0.75 NA Intergenic L1ME2|LINE|L1 417483 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 178.25-52 chr5 8568015 8568306 + 0.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 107235 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 231-9 chr16 46796344 46796857 + 0.75 NA TTS (NR_145835) TTS (NR_145835) -33354 NM_001308301 91807 Hs.130465 NM_182493 ENSG00000140795 MYLK3 MLCK|MLCK2|caMLCK myosin light chain kinase 3 protein-coding 211-25 chr3 26926545 26927015 + 0.75 NA Intergenic MIRb|SINE|MIR 232223 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 312.5-7 chr7 79774268 79775196 + 0.75 NA Intergenic Intergenic 320772 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 242.75-10 chr14 84112851 84113208 + 0.75 NA Intergenic Intergenic -1158903 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 172.25-38 chr20 40396092 40396422 + 0.75 NA Intergenic L2c|LINE|L2 292979 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 223.75-24 chr8 117987377 117987728 + 0.75 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -66639 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 246.5-29 chr8 135408849 135409426 + 0.75 NA Intergenic L1MC3|LINE|L1 -48319 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 220 chr1 231682123 231682754 + 0.75 NA intron (NM_001164556, intron 1 of 4) MER34A|LTR|ERV1 55623 NM_001164555 27185 Hs.13318 NM_018662 ENSG00000162946 DISC1 C1orf136|SCZD9 DISC1 scaffold protein protein-coding 216.75 chr1 28995252 28995810 + 0.75 NA intron (NM_203343, intron 3 of 16) AluSc|SINE|Alu 80955 NM_001166006 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 247.5-11 chr11 56541687 56542421 + 0.75 NA TTS (NM_001005245) TTS (NM_001005245) 1203 NM_001005245 219487 Hs.553632 NM_001005245 ENSG00000255223 OR5M11 OR11-199 olfactory receptor family 5 subfamily M member 11 protein-coding 160.75-9 chr1 186592733 186593100 + 0.75 NA Intergenic L1PA14|LINE|L1 87507 NM_000963 5743 Hs.196384 NM_000963 ENSG00000073756 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 protein-coding 248.5-16 chr4 79384136 79384830 + 0.75 NA Intergenic L1MA4A|LINE|L1 23745 NM_033214 2712 Hs.98008 NM_033214 ENSG00000196475 GK2 GKP2|GKTA glycerol kinase 2 protein-coding 184.75-81 chrX 81464289 81464781 + 0.75 NA Intergenic Intergenic 262433 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 156.25-33 chr18 33041049 33041462 + 0.75 NA intron (NM_001308126, intron 21 of 23) L1MC4|LINE|L1 -268232 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 227.75-14 chr18 70932273 70932944 + 0.75 NA Intergenic Intergenic -281654 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 222.75-30 chr5 22371632 22372219 + 0.75 NA intron (NM_001364104, intron 2 of 13) L2|LINE|L2 -158075 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 152.25-26 chr14 53857978 53858284 + 0.75 NA Intergenic Intergenic 90353 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 173.75-52 chr4 122038884 122039365 + 0.75 NA Intergenic MamSINE1|SINE|tRNA-RTE -87064 NM_001130698 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 151.25-26 chr14 100392534 100392798 + 0.75 NA intron (NM_001350948, intron 2 of 6) intron (NM_001350948, intron 2 of 6) 16181 NM_024515 79446 Hs.497599 NM_024515 ENSG00000176473 WDR25 C14orf67 WD repeat domain 25 protein-coding 199.25-18 chr15 48206364 48206927 + 0.75 NA intron (NM_001184832, intron 1 of 26) intron (NM_001184832, intron 1 of 26) 343 NM_001184832 6557 Hs.123116 NM_000338 ENSG00000074803 SLC12A1 BSC1|NKCC2 solute carrier family 12 member 1 protein-coding 190.75-12 chr10 108140783 108141191 + 0.75 NA Intergenic L2c|LINE|L2 -71694 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 267.5-10 chr21 22549556 22550233 + 0.75 NA Intergenic Intergenic 451277 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 187-40 chr4 119598210 119598619 + 0.75 NA intron (NM_033437, intron 2 of 20) intron (NM_033437, intron 2 of 20) 29323 NM_033430 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 217-8 chr15 82685791 82686097 + 0.75 NA 3' UTR (NM_001348440, exon 5 of 5) 3' UTR (NM_001348440, exon 5 of 5) -23269 NM_001348441 8120 Hs.199593 NM_004644 ENSG00000103723 AP3B2 EIEE48|NAPTB adaptor related protein complex 3 subunit beta 2 protein-coding 227.25-16 chr17 61532931 61533297 + 0.75 NA Intergenic Intergenic 58105 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 201-23 chr3 79745586 79745973 + 0.75 NA intron (NM_002941, intron 1 of 30) intron (NM_002941, intron 1 of 30) 22219 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 199.75-44 chr5 65037317 65037815 + 0.75 NA Intergenic Intergenic 268636 NM_005869 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 275.5-16 chr4 111564769 111565430 + 0.75 NA Intergenic Intergenic -580355 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 146-24 chr14 75904842 75905085 + 0.75 NA intron (NM_015072, intron 31 of 31) intron (NM_015072, intron 31 of 31) 77032 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 207.25-28 chr18 54436160 54436787 + 0.75 NA Intergenic Intergenic 78556 NR_110234 162681 Hs.208701 NM_173529 ENSG00000166845 C18orf54 LAS2 chromosome 18 open reading frame 54 protein-coding 251.25-14 chr2 45991535 45992041 + 0.75 NA intron (NM_005400, intron 6 of 14) intron (NM_005400, intron 6 of 14) -305619 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 155.75-97 chr7 145808348 145808599 + 0.75 NA Intergenic L1ME3B|LINE|L1 -965798 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 255.5-25 chr4 32987233 32987898 + 0.75 NA Intergenic Intergenic 636527 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 204.75-26 chr2 145608207 145608582 + 0.75 NA Intergenic Intergenic 940427 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 203.25-22 chr2 84800430 84800786 + 0.75 NA intron (NM_001370, intron 70 of 76) L1P4d|LINE|L1 80476 NM_001307978 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 176.5-55 chr3 170781714 170782044 + 0.75 NA Intergenic Intergenic 88316 NR_135259 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 159-23 chr15 23887379 23887695 + 0.75 NA Intergenic Intergenic -87610 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 339.25-4 chr14 87790817 87791497 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -135863 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 250.25-9 chr16 58763721 58764406 + 0.75 NA Intergenic L1M4|LINE|L1 -29747 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 178-21 chr14 54799448 54799827 + 0.75 NA Intergenic L1ME4b|LINE|L1 44804 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 257.75-13 chr2 199050229 199050648 + 0.75 NA Intergenic Intergenic 407501 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 179.25-14 chr11 12978810 12979109 + 0.75 NA TTS (NR_038904) TTS (NR_038904) 10589 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 BLACAT2 long intergenic non-protein coding RNA 958 ncRNA 149.75-102 chr8 120815472 120815737 + 0.75 NA Intergenic Intergenic -3558 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 263.75-4 chr12 10793319 10793721 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger 9107 NM_023919 50837 Hs.533754 NM_023919 ENSG00000121377 TAS2R7 T2R7|TRB4 taste 2 receptor member 7 protein-coding 238-3 chr1 188663249 188663686 + 0.75 NA Intergenic Intergenic 1219839 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 153.5-39 chr17 33434897 33435268 + 0.75 NA intron (NM_001094, intron 1 of 9) HAL1M8|LINE|L1 98678 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 237.75-15 chr3 96164148 96164530 + 0.75 NA Intergenic Intergenic -195625 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 210.25-14 chr17 62968193 62968485 + 0.75 NA intron (NM_025185, intron 1 of 25) intron (NM_025185, intron 1 of 25) 2104 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 145.75-86 chr4 34494074 34494462 + 0.75 NA Intergenic THE1D-int|LTR|ERVL-MaLR -224521 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 188.25-64 chr8 123364738 123365190 + 0.75 NA intron (NM_014109, intron 8 of 27) L1PB1|LINE|L1 -16834 NR_030382 693130 NR_030382 ENSG00000283172 MIR548D1 MIRN548D1 microRNA 548d-1 ncRNA 314.5-6 chr2 164239354 164239807 + 0.75 NA Intergenic L2a|LINE|L2 328915 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 153.75-34 chr2 129437784 129438200 + 0.75 NA Intergenic Intergenic -164101 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 219-16 chr4 65746735 65747340 + 0.75 NA Intergenic Intergenic -76542 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 193.5-34 chr2 32248277 32248798 + 0.75 NA intron (NM_001302504, intron 3 of 7) MER49|LTR|ERV1 16349 NM_001199138 58484 Hs.574741 NM_021209 ENSG00000091106 NLRC4 AIFEC|CARD12|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|CLR2.1|FCAS4|IPAF NLR family CARD domain containing 4 protein-coding 145.75-30 chr14 19997743 19998064 + 0.75 NA Intergenic L1ME3|LINE|L1 -4159 NR_145508 390432 NM_001348271 ENSG00000196383 OR4Q2 OR4Q2P olfactory receptor family 4 subfamily Q member 2 (gene/pseudogene) protein-coding 154.5-95 chr8 104638476 104638875 + 0.75 NA Intergenic Intergenic -49651 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 149.75-94 chr8 36105167 36105445 + 0.75 NA Intergenic L1MEc|LINE|L1 -394986 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 230.5-6 chr11 21176354 21176723 + 0.75 NA intron (NM_201551, intron 13 of 18) Charlie13b|DNA|hAT-Charlie 506952 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 160-76 chr7 33136190 33136591 + 0.75 NA intron (NM_001348044, intron 1 of 18) L1MB7|LINE|L1 6826 NM_001348040 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 202.5-17 chr12 129509954 129510442 + 0.75 NA intron (NM_133448, intron 3 of 8) L1MA2|LINE|L1 301597 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 170.25-3 chr1 175457337 175457645 + 0.75 NA intron (NM_003285, intron 2 of 22) intron (NM_003285, intron 2 of 22) -264504 NM_001319230 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 273.25-17 chr7 88943659 88944304 + 0.75 NA intron (NM_181646, intron 1 of 3) L1ME1|LINE|L1 -148244 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 160.5-68 chr3 188662194 188662527 + 0.75 NA intron (NM_005578, intron 6 of 10) intron (NM_005578, intron 6 of 10) -26421 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 156.25-99 chr8 127064789 127065059 + 0.75 NA Intergenic Intergenic -14950 NR_109833 101867536 Hs.652970 NR_109833 ENSG00000282961 PRNCR1 CARLo-3|PCAT8 prostate cancer associated non-coding RNA 1 ncRNA 211.75-38 chr7 27610247 27610558 + 0.75 NA intron (NM_152740, intron 4 of 7) L1MA10|LINE|L1 -5572 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 171.75-52 chr3 164940397 164940905 + 0.75 NA Intergenic Intergenic -109171 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 293.75-12 chr5 132015858 132016475 + 0.75 NA Intergenic L2a|LINE|L2 -4098 NM_001205250 23305 Hs.14945 NM_015256 ENSG00000164398 ACSL6 ACS2|FACL6|LACS 6|LACS2|LACS5 acyl-CoA synthetase long chain family member 6 protein-coding 179.75-68 chr9 2167101 2167374 + 0.75 NA intron (NM_001289397, intron 28 of 32) L3|LINE|CR1 8781 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 240.5-16 chr22 33078267 33078946 + 0.75 NA Intergenic MIR|SINE|MIR -20225 NM_001135774 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 211-24 chr22 38096396 38096963 + 0.75 NA intron (NM_025045, intron 7 of 13) intron (NM_025045, intron 7 of 13) -13516 NM_013356 23539 Hs.745256 NM_013356 ENSG00000100156 SLC16A8 MCT3|REMP solute carrier family 16 member 8 protein-coding 193.5-30 chr17 55305503 55305850 + 0.75 NA intron (NM_001330375, intron 2 of 3) MIRb|SINE|MIR 39454 NM_001330375 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 182.25-65 chr8 82614037 82614545 + 0.75 NA Intergenic MSTB1|LTR|ERVL-MaLR -297813 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 188.5-53 chr5 43431250 43431794 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR -19131 NM_001301874 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 164.75-47 chr2 171463163 171463505 + 0.75 NA intron (NM_001164821, intron 8 of 11) L1ME4b|LINE|L1 -28531 NM_024770 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 153-93 chr8 141257171 141257520 + 0.75 NA TTS (NR_161376) TTS (NR_161376) -2716 NM_001286646 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45 member 4 protein-coding 260-7 chr3 167983969 167984530 + 0.75 NA Intergenic L1MA2|LINE|L1 88301 NR_033843 646168 Hs.390443 NR_033843 ENSG00000244227 LRRC77P LINC01330 leucine rich repeat containing 77, pseudogene pseudo 147.25-47 chr2 64680312 64680587 + 0.75 NA Intergenic Intergenic -26536 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 166-75 chr8 70209813 70210194 + 0.75 NA intron (NM_001321711, intron 4 of 21) intron (NM_001321711, intron 4 of 21) -138751 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 216.25-30 chr8 92853789 92854102 + 0.75 NA Intergenic L1MB1|LINE|L1 -67885 NR_046114 441369 Hs.521683 NR_046114 ENSG00000248858 FLJ46284 - uncharacterized LOC441369 ncRNA 192.25-27 chr17 52086318 52086817 + 0.75 NA intron (NM_001082533, intron 2 of 9) MLT1J2|LTR|ERVL-MaLR 72147 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 190.5-65 chr8 113620664 113621220 + 0.75 NA Intergenic L1M5|LINE|L1 -184003 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 217.75-27 chr3 98223220 98223582 + 0.75 NA Intergenic Intergenic -40843 NM_001005479 79295 Hs.554712 NM_001005479 ENSG00000230301 OR5H6 OR3-11 olfactory receptor family 5 subfamily H member 6 (gene/pseudogene) protein-coding 190-27 chr2 132792327 132792620 + 0.75 NA intron (NM_207481, intron 12 of 17) intron (NM_207481, intron 12 of 17) -120947 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 197.25-17 chr14 63872887 63873363 + 0.75 NA intron (NM_015180, intron 1 of 114) intron (NM_015180, intron 1 of 114) 20121 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 255-2 chr13 45749587 45749991 + 0.75 NA Intergenic Intergenic 47320 NM_001286342 220082 Hs.186363 NM_152719 ENSG00000174015 SPERT CBY2|NURIT spermatid associated protein-coding 270-13 chr4 67443710 67444233 + 0.75 NA Intergenic L1MC3|LINE|L1 -21971 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 289.25-20 chr8 120249320 120249860 + 0.75 NA intron (NM_021110, intron 21 of 47) intron (NM_021110, intron 21 of 47) 124488 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 188.25-70 chr9 108335680 108336015 + 0.75 NA Intergenic Intergenic 520139 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 196.5-25 chr2 69491076 69491600 + 0.75 NA intron (NM_014911, intron 17 of 21) intron (NM_014911, intron 17 of 21) 28833 NR_003705 100124535 Hs.693447 NR_003705 ENSG00000207016 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 183.25-20 chr14 24348414 24348774 + 0.75 NA Intergenic AluSz6|SINE|Alu -8603 NM_006871 11035 Hs.268551 NM_006871 ENSG00000129465 RIPK3 RIP3 receptor interacting serine/threonine kinase 3 protein-coding 201.25-13 chr16 12189664 12190028 + 0.75 NA intron (NM_032167, intron 13 of 20) intron (NM_032167, intron 13 of 20) 213112 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 225.5-11 chr13 39940696 39941278 + 0.75 NA Intergenic MIR|SINE|MIR -240822 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 183.75-86 chr7 11651826 11652353 + 0.75 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 180109 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 172.5-4 chr1 200340847 200341139 + 0.75 NA Intergenic Intergenic 32799 NR_040064 554279 Hs.434694 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 185.5-29 chr14 74173438 74173885 + 0.75 NA intron (NM_001024674, intron 5 of 5) intron (NM_001024674, intron 5 of 5) -65788 NM_182894 338917 Hs.449771 NM_182894 ENSG00000119614 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 158.25-104 chr7 81754404 81754644 + 0.75 NA intron (NM_001010934, intron 4 of 4) intron (NM_001010934, intron 4 of 4) 15523 NM_001010931 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 168.75-85 chr6 55635012 55635308 + 0.75 NA Intergenic Intergenic -55946 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 373.25-3 chr4 70316348 70317114 + 0.75 NA Intergenic Intergenic -18250 NM_033122 85438 Hs.120316 NM_033122 ENSG00000145309 CABS1 C4orf35|CLPH|NYD-SP26 calcium binding protein, spermatid associated 1 protein-coding 203.5 chr1 34003505 34003826 + 0.75 NA intron (NM_052896, intron 3 of 69) intron (NM_052896, intron 3 of 69) 134709 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 401.5 chr6 36397291 36398417 + 0.75 NA intron (NM_152990, intron 4 of 4) AluJo|SINE|Alu -10054 NM_001207041 51513 Hs.272398 NM_016135 ENSG00000010030 ETV7 TEL-2|TEL2|TELB ETS variant 7 protein-coding 157.5-96 chr7 54176894 54177163 + 0.75 NA Intergenic Intergenic -153669 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 257.75-16 chr3 41432345 41432911 + 0.75 NA intron (NR_136342, intron 32 of 34) intron (NR_136342, intron 32 of 34) 233123 NM_001098209 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 222.25-25 chr3 1256754 1257289 + 0.75 NA intron (NM_001289080, intron 4 of 22) L1ME3G|LINE|L1 163997 NM_001349350 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 191.25-67 chrX 94371942 94372282 + 0.75 NA Intergenic L1MA1|LINE|L1 691114 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 180.25-38 chr2 193471643 193472015 + 0.75 NA Intergenic MER52-int|LTR|ERV1 721984 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 304.25-2 chr10 57819959 57820565 + 0.75 NA Intergenic Intergenic 447632 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 176.75-37 chr2 73489378 73489712 + 0.75 NA intron (NM_015120, intron 9 of 22) intron (NM_015120, intron 9 of 22) 32442 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 245.25-19 chr4 116041051 116041722 + 0.75 NA Intergenic Intergenic -258339 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 195.25-12 chr13 106716586 106717032 + 0.75 NA Intergenic L1MB7|LINE|L1 62929 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 184-35 chr3 140292411 140292877 + 0.75 NA intron (NM_022131, intron 2 of 16) MIRc|SINE|MIR 216145 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 177.75-11 chr11 83369673 83370016 + 0.75 NA Intergenic L1MD|LINE|L1 -83437 NM_001286120 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 152.5-14 chr11 103041056 103041362 + 0.75 NA Intergenic Intergenic 50951 NM_032299 84259 Hs.503716 NM_032299 ENSG00000137692 DCUN1D5 SCCRO5 defective in cullin neddylation 1 domain containing 5 protein-coding 199.5-23 chr2 48030503 48031079 + 0.75 NA Intergenic Intergenic -124998 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 161.75-85 chr7 114590019 114590256 + 0.75 NA intron (NM_148898, intron 4 of 17) intron (NM_148898, intron 4 of 17) -63208 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 194-4 chr1 196025907 196026367 + 0.75 NA Intergenic LTR82B|LTR|ERVL 62578 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 164.5-30 chr2 14607866 14608181 + 0.75 NA Intergenic AluSq|SINE|Alu -24694 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 188.25-20 chr17 42912156 42912484 + 0.75 NA 3' UTR (NM_001270397, exon 5 of 5) 3' UTR (NM_001270397, exon 5 of 5) 11521 NM_001270397 2538 Hs.212293 NM_000151 ENSG00000131482 G6PC G6PC1|G6PT|G6Pase|GSD1|GSD1a glucose-6-phosphatase catalytic subunit protein-coding 214-17 chr18 33270940 33271353 + 0.75 NA intron (NM_001308126, intron 12 of 23) L1MB7|LINE|L1 169425 NM_001371121 157-20 chr10 132713457 132713769 + 0.75 NA intron (NM_005539, intron 8 of 15) intron (NM_005539, intron 8 of 15) 32338 NM_001321042 3632 Hs.523360 NM_005539 ENSG00000068383 INPP5A 5PTASE inositol polyphosphate-5-phosphatase A protein-coding 153-38 chr2 136874384 136874803 + 0.75 NA intron (NM_001316349, intron 1 of 27) intron (NM_001316349, intron 1 of 27) 109048 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 167.75-14 chr11 83761217 83761676 + 0.75 NA intron (NM_001142699, intron 18 of 27) intron (NM_001142699, intron 18 of 27) -79021 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 165.75-13 chr1 218321537 218321766 + 0.75 NA intron (NM_016052, intron 4 of 4) intron (NM_016052, intron 4 of 4) -23633 NR_138149 7042 Hs.133379 NM_003238 ENSG00000092969 TGFB2 G-TSF|LDS4|TGF-beta2 transforming growth factor beta 2 protein-coding 178.75-37 chr22 24933160 24933542 + 0.75 NA Intergenic L2c|LINE|L2 13344 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 188.5-71 chr8 110500325 110500880 + 0.75 NA Intergenic L1MCa|LINE|L1 -524831 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 258.25-10 chr18 4997220 4997627 + 0.75 NA Intergenic L1M5|LINE|L1 -83759 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 169.75-44 chr2 236744624 236745095 + 0.75 NA Intergenic Intergenic 175034 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 150-87 chr8 102604278 102604611 + 0.75 NA Intergenic L2a|LINE|L2 49520 NR_103760 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 302-2 chr10 84616137 84616748 + 0.75 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR 191273 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 173-86 chr8 103282626 103283097 + 0.75 NA intron (NR_148213, intron 2 of 3) intron (NR_148213, intron 2 of 3) -15633 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 220.75-23 chr3 58107596 58108131 + 0.75 NA intron (NM_001164318, intron 12 of 45) intron (NM_001164318, intron 12 of 45) 62772 NR_135534 105377105 Hs.613914 NR_135534 ENSG00000244161 FLNB-AS1 - FLNB antisense RNA 1 ncRNA 330.75-6 chr21 25104675 25105332 + 0.75 NA Intergenic L1MD|LINE|L1 264453 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 196.25-44 chr4 37175886 37176365 + 0.75 NA Intergenic Charlie5|DNA|hAT-Charlie 65866 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 217.25-33 chr3 140331553 140331936 + 0.75 NA intron (NM_022131, intron 2 of 16) intron (NM_022131, intron 2 of 16) 177045 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 191.25-63 chr8 114416389 114416901 + 0.75 NA Intergenic L1M1|LINE|L1 -979706 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 152.25-51 chr2 206248972 206249241 + 0.75 NA intron (NR_104359, intron 2 of 5).2 AluSz6|SINE|Alu -25557 NM_001369654 57683 Hs.110489 NM_020923 ENSG00000204186 ZDBF2 Slx9 zinc finger DBF-type containing 2 protein-coding 180.5-9 chr11 57112458 57112760 + 0.75 NA Intergenic Tigger2|DNA|TcMar-Tigger -69344 NM_001005210 219527 Hs.199853 NM_001005210 ENSG00000183908 LRRC55 - leucine rich repeat containing 55 protein-coding 311.5-14 chr7 106888766 106889269 + 0.75 NA intron (NM_001282426, intron 10 of 10) intron (NM_001282426, intron 10 of 10) 23538 NM_002649 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 181.75-56 chr5 136777406 136777674 + 0.75 NA Intergenic MER99|DNA|hAT? -350657 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 264.5-3 chr10 54838100 54838625 + 0.75 NA intron (NM_001354404, intron 4 of 34) THE1D|LTR|ERVL-MaLR -37071 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 222.5-22 chr2 52092097 52092582 + 0.75 NA intron (NR_135237, intron 7 of 10) L1M1|LINE|L1 -278309 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 209.75-3 chr10 95726096 95726454 + 0.75 NA intron (NM_001098175, intron 1 of 9) L1MDa|LINE|L1 14511 NM_001098175 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 214-18 chr18 66987219 66987611 + 0.75 NA Intergenic L1MC3|LINE|L1 -94169 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 261.5-21 chr5 133632617 133633215 + 0.75 NA Intergenic AluJb|SINE|Alu -20375 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 227.25-5 chr11 27163445 27163824 + 0.75 NA intron (NR_125767, intron 2 of 4) MIR|SINE|MIR 55134 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 171.25-50 chr6 53737520 53737812 + 0.75 NA Intergenic MIR|SINE|MIR -57339 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 292.5-12 chr8 49049079 49049697 + 0.75 NA Intergenic L1PA17|LINE|L1 -4948 NM_001256596 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 212.25-35 chr5 112604687 112605103 + 0.75 NA Intergenic LTR16D|LTR|ERVL -23541 NR_104672 102467214 Hs.124613 NR_104672 LINC02200 - long intergenic non-protein coding RNA 2200 ncRNA 183.25-11 chr11 14040894 14041408 + 0.75 NA intron (NM_006108, intron 2 of 15) intron (NM_006108, intron 2 of 15) 78428 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 146.25-78 chr5 126488363 126488685 + 0.75 NA intron (NR_146196, intron 12 of 14) intron (NR_146196, intron 12 of 14) 23374 NM_001146322 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 355.75-8 chr7 89001583 89002229 + 0.75 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -206169 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 333.75-6 chr7 119318604 119319498 + 0.75 NA Intergenic L2b|LINE|L2 588324 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 238.75-20 chr3 127929111 127929710 + 0.75 NA intron (NM_001370224, intron 3 of 6) intron (NM_001370224, intron 3 of 6) 14178 NM_001370224 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 236.25-33 chr7 42854393 42854863 + 0.75 NA Intergenic Intergenic 57215 NM_001363436 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 272.25-16 chr5 127251532 127252270 + 0.75 NA Intergenic L1ME4a|LINE|L1 -38863 NM_001308121 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 149.75-95 chr8 48367374 48367638 + 0.75 NA Intergenic L1MD2|LINE|L1 -184061 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 159.5-6 chr1 218534632 218534922 + 0.75 NA intron (NR_031644, intron 2 of 6) MER115|DNA|hAT-Tip100 24682 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 223.5-9 chr11 80780164 80780558 + 0.75 NA Intergenic MLT1L|LTR|ERVL-MaLR -17558 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 157.75 chr1 59539610 59539874 + 0.75 NA intron (NM_001278224, intron 1 of 9) L1ME3|LINE|L1 24112 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 150.25-74 chr4 180627305 180627663 + 0.75 NA Intergenic Intergenic 531665 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 164.5-2 chr1 62967973 62968463 + 0.75 NA Intergenic L1PA16|LINE|L1 42707 NR_146607 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 156-65 chr4 48330543 48330782 + 0.75 NA Intergenic Intergenic -10867 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 233-16 chr17 82068803 82069217 + 0.75 NA Intergenic L1M4a2|LINE|L1 -3206 NM_022156 64118 Hs.514599 NM_022156 ENSG00000169718 DUS1L DUS1|PP3111 dihydrouridine synthase 1 like protein-coding 161-48 chr2 103502742 103503018 + 0.75 NA Intergenic Intergenic -518451 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 196.25-37 chr20 39553287 39553760 + 0.75 NA Intergenic Intergenic -328775 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 152-48 chr21 20329729 20329976 + 0.75 NA Intergenic Intergenic -71167 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 149.25-11 chr10 118708909 118709203 + 0.75 NA intron (NM_153810, intron 3 of 8) Tigger2a|DNA|TcMar-Tigger 45914 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 254.5-22 chr3 20885307 20885880 + 0.75 NA Intergenic Intergenic -520133 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 176.25-16 chr12 28334711 28334982 + 0.75 NA intron (NM_001352084, intron 6 of 11) intron (NM_001352084, intron 6 of 11) -144108 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 176-7 chr10 75738890 75739277 + 0.75 NA intron (NR_132791, intron 1 of 2) intron (NR_132791, intron 1 of 2) 26628 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 166-16 chr11 81396105 81396370 + 0.75 NA Intergenic Intergenic 494599 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 184-36 chr3 181935560 181935950 + 0.75 NA Intergenic L1MC5|LINE|L1 -16609 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 202.75-7 chr10 85252554 85252839 + 0.75 NA Intergenic Intergenic -53758 NR_120667 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 359.25 chr1 238930767 238931291 + 0.75 NA Intergenic Intergenic -445012 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 293.75-11 chr5 85917200 85917780 + 0.75 NA Intergenic Intergenic -364954 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 230.75-29 chr3 130826005 130826446 + 0.75 NA Intergenic Intergenic -24370 NM_001199182 27032 Hs.584884 NM_014382 ENSG00000017260 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase secretory pathway Ca2+ transporting 1 protein-coding 166.25-12 chr10 89115968 89116427 + 0.75 NA Intergenic Intergenic -52786 NR_039827 100616192 NR_039827 ENSG00000265375 MIR4679-2 - microRNA 4679-2 ncRNA 207-32 chr4 66284053 66284444 + 0.75 NA Intergenic L1ME3A|LINE|L1 7424 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 238.5-31 chr5 21213252 21213748 + 0.75 NA Intergenic Intergenic -245980 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 194-16 chr12 9364517 9365089 + 0.75 NA Intergenic MER101B|LTR|ERV1 -2661 NR_120479 101930452 Hs.734183 NR_120479 ENSG00000260423 LINC02367 - long intergenic non-protein coding RNA 2367 ncRNA 196.5-59 chr8 112906918 112907393 + 0.75 NA intron (NM_001363185, intron 8 of 66) intron (NM_001363185, intron 8 of 66) 263662 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 183.25-14 chr12 16541137 16541491 + 0.75 NA Intergenic Intergenic 64065 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 265.25-3 chr1 189958408 189958977 + 0.75 NA Intergenic Intergenic 517318 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 193.25-10 chr10 85026432 85026800 + 0.75 NA Intergenic LTR57-int|LTR|ERVL 172289 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 285-4 chr4 90821167 90821697 + 0.75 NA intron (NM_001145065, intron 8 of 10) intron (NM_001145065, intron 8 of 10) 586401 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 194.75-32 chr4 63234611 63235017 + 0.75 NA Intergenic Intergenic -1073049 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 155.75-84 chr5 84496522 84496823 + 0.75 NA Intergenic MLT1E|LTR|ERVL-MaLR -111792 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 221.5-5 chr1 172680051 172680586 + 0.75 NA Intergenic Intergenic 21215 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 192-4 chr1 190776072 190776446 + 0.75 NA intron (NR_033922, intron 2 of 4) intron (NR_033922, intron 2 of 4) 151369 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 280.25-13 chr8 140991138 140991789 + 0.75 NA intron (NM_001352737, intron 1 of 32) intron (NM_001352737, intron 1 of 32) 9541 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 229.5-26 chr3 173509490 173509832 + 0.75 NA intron (NM_014932, intron 2 of 6) intron (NM_014932, intron 2 of 6) -74773 NM_001365928 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 219.75-18 chr18 69736000 69736492 + 0.75 NA intron (NM_152721, intron 5 of 7) intron (NM_152721, intron 5 of 7) 211627 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 170.5-5 chr10 5291305 5291624 + 0.75 NA Intergenic Intergenic -20228 NR_149060 110806285 NR_149060 ENSG00000224034 LINC02561 - long intergenic non-protein coding RNA 2561 ncRNA 225-22 chr7 4894259 4894671 + 0.75 NA intron (NR_072989, intron 8 of 8) MER74A|LTR|ERVL -10749 NM_018059 55698 Hs.667336 NM_018059 ENSG00000157927 RADIL RASIP2 Rap associating with DIL domain protein-coding 152.75-62 chr3 156683401 156683755 + 0.75 NA intron (NM_015508, intron 2 of 5) intron (NM_015508, intron 2 of 5) 6914 NM_001184718 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 212-3 chr1 67032044 67032471 + 0.75 NA intron (NM_015139, intron 8 of 11) intron (NM_015139, intron 8 of 11) 21891 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 202.75-26 chr2 154905688 154906063 + 0.75 NA Intergenic THE1C|LTR|ERVL-MaLR 207180 NM_002239 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 213.5-6 chr1 212029669 212030097 + 0.75 NA intron (NM_015434, intron 1 of 19) intron (NM_015434, intron 1 of 19) -5670 NM_001286230 51514 Hs.656473 NM_016448 ENSG00000143476 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog protein-coding 208.75-30 chr6 8675385 8675892 + 0.75 NA intron (NR_038980, intron 3 of 4) intron (NR_038980, intron 3 of 4) 23429 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 158.25-77 chr4 65229420 65229668 + 0.75 NA Intergenic Intergenic -225044 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 182-22 chr15 89592553 89593014 + 0.75 NA intron (NM_001308025, intron 5 of 21) intron (NM_001308025, intron 5 of 21) 17196 NM_001308025 90381 Hs.441708 NM_152259 ENSG00000140534 TICRR C15orf42|SLD3|Treslin TOPBP1 interacting checkpoint and replication regulator protein-coding 312.75-4 chr6 160156534 160157143 + 0.75 NA intron (NM_153187, intron 9 of 9) MIRb|SINE|MIR 35007 NM_153187 6580 Hs.117367 NM_003057 ENSG00000175003 SLC22A1 HOCT1|OCT1|oct1_cds solute carrier family 22 member 1 protein-coding 157-18 chr10 111651427 111651802 + 0.75 NA Intergenic Intergenic 532151 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 174.5-26 chr14 56625634 56625980 + 0.75 NA intron (NM_017799, intron 12 of 15) intron (NM_017799, intron 12 of 15) 46009 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 283.25-2 chr1 238655190 238655632 + 0.75 NA Intergenic Intergenic -169394 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 239-15 chr7 7326219 7326639 + 0.75 NA Intergenic Intergenic 71275 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 158-24 chr16 3799102 3799373 + 0.75 NA intron (NM_004380, intron 3 of 30) L1MB7|LINE|L1 80883 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 157.75-97 chr6 64070820 64071048 + 0.75 NA intron (NM_001292009, intron 32 of 43) intron (NM_001292009, intron 32 of 43) 264098 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 160.5-52 chr2 138400632 138401009 + 0.75 NA Intergenic L1MA3|LINE|L1 -100950 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 208.75-3 chr1 169050108 169050477 + 0.75 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 36713 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 165-29 chr14 76349644 76350101 + 0.75 NA Intergenic Intergenic -21475 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 214.25-38 chr8 123026690 123027074 + 0.75 NA intron (NM_001330601, intron 1 of 6) L1MB8|LINE|L1 -1110 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 251.5-29 chr7 35363097 35363608 + 0.75 NA intron (NR_038864, intron 2 of 2) intron (NR_038864, intron 2 of 2) 49497 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 164.25-44 chr2 113860208 113860570 + 0.75 NA intron (NR_110174, intron 2 of 4) L2a|LINE|L2 -29545 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 actin related protein 3 protein-coding 158.75-68 chr6 56928859 56929260 + 0.75 NA intron (NM_001144769, intron 2 of 96) L1M3|LINE|L1 25771 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 182.75-57 chr5 44402499 44402867 + 0.75 NA intron (NR_108034, intron 2 of 2) intron (NR_108034, intron 2 of 2) -13263 NM_004465 2255 Hs.248049 NM_004465 ENSG00000070193 FGF10 - fibroblast growth factor 10 protein-coding 220.75-33 chr5 106673280 106673741 + 0.75 NA Intergenic Intergenic 337504 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 210.75-16 chr14 35834496 35834987 + 0.75 NA intron (NM_032352, intron 3 of 9) intron (NM_032352, intron 3 of 9) 8403 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 244.75-12 chr2 123366310 123366893 + 0.75 NA Intergenic Intergenic -293120 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 242.5-8 chr14 21489294 21489709 + 0.75 NA intron (NM_001303523, intron 4 of 7) intron (NM_001303523, intron 4 of 7) 12306 NM_014828 9878 Hs.555910 NM_014828 ENSG00000092203 TOX4 C14orf92|KIAA0737|LCP1|MIG7 TOX high mobility group box family member 4 protein-coding 210-11 chr14 69933085 69933638 + 0.75 NA intron (NM_001034852, intron 1 of 11) intron (NM_001034852, intron 1 of 11) -44772 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 197.75-45 chr4 30814548 30815005 + 0.75 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 94407 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 183.5-62 chr5 129606723 129607092 + 0.75 NA intron (NM_133638, intron 8 of 22) AluSx1|SINE|Alu -141187 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 188.25-57 chr7 34346394 34346765 + 0.75 NA TTS (NR_033664) TTS (NR_033664) -311639 NM_207172 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 204 chr1 14378680 14379202 + 0.75 NA intron (NR_149058, intron 3 of 4) L1MA3|LINE|L1 41032 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 152.25-100 chr8 108697042 108697386 + 0.75 NA intron (NR_136411, intron 1 of 3) intron (NR_136411, intron 1 of 3) 90380 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 155.25-29 chr15 37715393 37715819 + 0.75 NA Intergenic Intergenic -219001 NM_152453 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 155.25-77 chr6 62038682 62039043 + 0.75 NA intron (NR_146874, intron 3 of 13) intron (NR_146874, intron 3 of 13) 247363 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 239.25-23 chr5 101764003 101764691 + 0.75 NA Intergenic Intergenic 531937 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 289.25-13 chr4 58046561 58046992 + 0.75 NA Intergenic L1M4a2|LINE|L1 489552 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 275.25-4 chr4 36262114 36262681 + 0.75 NA intron (NR_122080, intron 2 of 2) intron (NR_122080, intron 2 of 2) 5879 NR_122080 439933 Hs.591071 NR_122079 ENSG00000247193 LOC439933 - uncharacterized LOC439933 ncRNA 164.25-82 chr7 96251315 96251703 + 0.75 NA intron (NM_001160210, intron 3 of 17) intron (NM_001160210, intron 3 of 17) -31753 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 266.5-18 chr8 103426106 103426546 + 0.75 NA intron (NM_015420, intron 4 of 10) intron (NM_015420, intron 4 of 10) 10940 NM_015420 25879 Hs.532265 NM_015420 ENSG00000164934 DCAF13 GM83|HSPC064|Sof1|WDSOF1 DDB1 and CUL4 associated factor 13 protein-coding 182.25-29 chr2 199867945 199868359 + 0.75 NA Intergenic Intergenic -16979 NM_001363886 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 223-17 chr3 62484405 62484950 + 0.75 NA intron (NM_003716, intron 21 of 29) intron (NM_003716, intron 21 of 29) -111127 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 167.5-82 chr5 151781858 151782256 + 0.75 NA intron (NM_198395, intron 1 of 11) intron (NM_198395, intron 1 of 11) -9881 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 298-6 chr5 13090617 13091283 + 0.75 NA Intergenic L1MA6|LINE|L1 -58064 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 235.75-3 chr10 20046371 20046798 + 0.75 NA intron (NM_001282736, intron 2 of 12) intron (NM_001282736, intron 2 of 12) 230152 NM_032812 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 150.5-7 chr1 98523133 98523346 + 0.75 NA Intergenic L1MA3|LINE|L1 -138482 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 270.5-5 chr14 43075897 43076394 + 0.75 NA Intergenic Intergenic 1431138 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 251-9 chr4 36298787 36299382 + 0.75 NA intron (NM_001170700, intron 5 of 9) L1ME3F|LINE|L1 17468 NM_001136536 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 164.75-42 chr2 85620651 85620957 + 0.75 NA intron (NM_001256728, intron 2 of 11) intron (NM_001256728, intron 2 of 11) 4618 NM_006590 10713 Hs.654745 NM_006590 ENSG00000168883 USP39 65K|CGI-21|HSPC332|SAD1|SNRNP65 ubiquitin specific peptidase 39 protein-coding 319.5-10 chr5 161340758 161341456 + 0.75 NA intron (NM_000813, intron 6 of 9) intron (NM_000813, intron 6 of 9) 207017 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 237-7 chr3 97735346 97735745 + 0.75 NA intron (NM_001080448, intron 15 of 17) intron (NM_001080448, intron 15 of 17) -28976 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 185.25-77 chr8 104225035 104225554 + 0.75 NA intron (NM_001282882, intron 1 of 5) MIR|SINE|MIR 1959 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 203.25-29 chr4 47500015 47500358 + 0.75 NA intron (NM_020453, intron 1 of 22) L2a|LINE|L2 14911 NM_020453 57205 Hs.437241 NM_020453 ENSG00000145246 ATP10D ATPVD ATPase phospholipid transporting 10D (putative) protein-coding 269.5-6 chr11 48252460 48253221 + 0.75 NA Intergenic L1PA16|LINE|L1 7736 NM_001004727 119764 Hs.553565 NM_001004727 ENSG00000172208 OR4X2 OR11-105 olfactory receptor family 4 subfamily X member 2 (gene/pseudogene) protein-coding 233.75-20 chr4 65042967 65043414 + 0.75 NA Intergenic Intergenic -38690 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 222.5-16 chr14 57361072 57361416 + 0.75 NA Intergenic L2b|LINE|L2 -29342 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 318.25-3 chr22 19389792 19390319 + 0.75 NA intron (NM_003325, intron 9 of 24) intron (NM_003325, intron 9 of 24) 41678 NM_003325 7290 Hs.474206 NM_003325 ENSG00000100084 HIRA DGCR1|TUP1|TUPLE1 histone cell cycle regulator protein-coding 232.5-39 chr5 2797574 2798161 + 0.75 NA Intergenic Intergenic 45736 NM_001306150 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 203.25-38 chr6 166060361 166060726 + 0.75 NA Intergenic L1P3|LINE|L1 -37177 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 169.5-61 chr3 180566669 180566965 + 0.75 NA Intergenic Intergenic -35346 NM_133462 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 164.5-58 chr4 72249458 72249932 + 0.75 NA Intergenic Intergenic 210563 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 182.25-60 chr8 68113251 68113597 + 0.75 NA intron (NM_024870, intron 25 of 39) intron (NM_024870, intron 25 of 39) 161378 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 178.25-28 chr2 58259243 58259537 + 0.75 NA Intergenic MamGypLTR3|LTR|Gypsy -16487 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 175.5-88 chr7 65242499 65242826 + 0.75 NA Intergenic L1MC|LINE|L1 101632 NR_146905 285905 Hs.567827 NM_182596 ENSG00000164669 INTS4P1 INTS4L1 integrator complex subunit 4 pseudogene 1 pseudo 263.5-11 chr15 33633411 33633913 + 0.75 NA intron (NM_001243996, intron 24 of 102) intron (NM_001243996, intron 24 of 102) 322695 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 185-45 chr3 62738914 62739269 + 0.75 NA intron (NM_003716, intron 3 of 29) MLT1H|LTR|ERVL-MaLR 136325 NM_183394 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 209.75-23 chr21 32167802 32168311 + 0.75 NA Intergenic MLT1A|LTR|ERVL-MaLR -81761 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 281.75-6 chr17 64204061 64204577 + 0.75 NA intron (NM_018469, intron 2 of 11) Charlie7|DNA|hAT-Charlie 26415 NM_001288733 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 223.75-23 chr8 18382574 18383157 + 0.75 NA Intergenic Intergenic -8417 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 197.75-29 chr18 41859748 41860030 + 0.75 NA Intergenic Intergenic -95345 NM_001308020 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 182.5-26 chr2 32024336 32024769 + 0.75 NA intron (NR_135587, intron 3 of 3) L1ME3A|LINE|L1 -13544 NR_126034 51072 Hs.444969 NM_015955 ENSG00000162959 MEMO1 C2orf4|CGI-27|MEMO|NS5ATP7 mediator of cell motility 1 protein-coding 175.75-22 chr16 27747016 27747394 + 0.75 NA intron (NM_015202, intron 15 of 27) intron (NM_015202, intron 15 of 27) -28176 NR_147898 100128079 Hs.610277 NR_147898 LOC100128079 - uncharacterized LOC100128079 ncRNA 200.25-36 chr4 95513910 95514297 + 0.75 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 34870 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 440 chr14 57876773 57877670 + 0.75 NA Intergenic L1PA15|LINE|L1 -11129 NM_001306087 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 158.5-79 chr4 157573381 157573859 + 0.75 NA intron (NR_026992, intron 2 of 2) MIRb|SINE|MIR 1130 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 427 chr5 105081266 105082156 + 0.75 NA Intergenic Intergenic -17763 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 162.5-80 chr6 169504018 169504268 + 0.75 NA intron (NR_146875, intron 19 of 20) L1ME2z|LINE|L1 197886 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 253.75-20 chr4 107138009 107138530 + 0.75 NA Intergenic Intergenic -101956 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 178.5-26 chr14 77681437 77681903 + 0.75 NA intron (NM_006020, intron 3 of 5) MER68|LTR|ERVL 26353 NM_006020 8846 Hs.94542 NM_006020 ENSG00000100601 ALKBH1 ABH|ABH1|ALKBH|alkB|hABH alkB homolog 1, histone H2A dioxygenase protein-coding 181-28 chr21 28683543 28683937 + 0.75 NA Intergenic Ricksha_0|DNA|MULE-MuDR 144422 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 222.5-28 chr2 205268057 205268597 + 0.75 NA intron (NM_057177, intron 16 of 21) intron (NM_057177, intron 16 of 21) -414173 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 225.5-38 chr5 11165607 11166109 + 0.75 NA intron (NM_001288715, intron 10 of 20) intron (NM_001288715, intron 10 of 20) -404624 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 208-26 chr5 19649819 19650229 + 0.75 NA intron (NM_001349562, intron 5 of 13) intron (NM_001349562, intron 5 of 13) 236248 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 170.75-44 chr3 89530397 89530754 + 0.75 NA Intergenic Intergenic 422954 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 168.5-38 chr16 71571520 71572037 + 0.75 NA intron (NM_000353, intron 6 of 11) intron (NM_000353, intron 6 of 11) 5314 NM_000353 6898 Hs.161640 NM_000353 ENSG00000198650 TAT - tyrosine aminotransferase protein-coding 257.25-16 chr3 50771947 50772387 + 0.75 NA intron (NM_004947, intron 1 of 52) L1MA1|LINE|L1 97087 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 176.5-65 chr5 44216479 44216894 + 0.75 NA Intergenic L1M4|LINE|L1 -172046 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 166.5-40 chr2 130767886 130768283 + 0.75 NA TTS (NM_001105193) TTS (NM_001105193) 11740 NM_001105195 205147 Hs.369289 NM_152698 ENSG00000178171 AMER3 FAM123C APC membrane recruitment protein 3 protein-coding 160.25-26 chr16 80614130 80614541 + 0.75 NA intron (NM_152342, intron 4 of 6) MLT1J1|LTR|ERVL-MaLR -41527 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 240.75-25 chr8 126097923 126098343 + 0.75 NA Intergenic LTR57-int|LTR|ERVL -146936 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 287-2 chr12 84526125 84526639 + 0.75 NA Intergenic Intergenic 386417 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 315.25-2 chr1 247598269 247599167 + 0.75 NA Intergenic Intergenic -6868 NM_001001914 81469 Hs.653227 NM_001001914 ENSG00000177476 OR2G3 OR1-33 olfactory receptor family 2 subfamily G member 3 protein-coding 152-64 chr4 110817014 110817311 + 0.75 NA Intergenic Intergenic 43485 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 330-7 chr6 132795130 132795729 + 0.75 NA intron (NM_052831, intron 2 of 13) MIRb|SINE|MIR 3208 NM_052831 116843 Hs.347144 NM_052831 ENSG00000146409 SLC18B1 C6orf192|dJ55C23.6 solute carrier family 18 member B1 protein-coding 180-42 chr3 45409043 45409584 + 0.75 NA intron (NM_001368263, intron 3 of 20) intron (NM_001368263, intron 3 of 20) 20737 NM_015340 23395 Hs.526975 NM_015340 ENSG00000011376 LARS2 HLASA|LEURS|PRLTS4|mtLeuRS leucyl-tRNA synthetase 2, mitochondrial protein-coding 332.75-4 chr21 29993646 29994318 + 0.75 NA Intergenic Intergenic -53930 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 166.25-67 chr8 84141385 84141787 + 0.75 NA Intergenic Tigger3a|DNA|TcMar-Tigger -41201 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 152.25-47 chr2 82968520 82968771 + 0.75 NA Intergenic Intergenic 111842 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 147.5-14 chr11 7462145 7462496 + 0.75 NA intron (NR_103855, intron 1 of 4) MIRb|SINE|MIR 3515 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 170-3 chr1 83866783 83867084 + 0.75 NA 3' UTR (NM_024686, exon 21 of 21) 3' UTR (NM_024686, exon 21 of 21) -5937 NR_119375 101927587 Hs.621230 NR_119375 ENSG00000233008 LINC01725 - long intergenic non-protein coding RNA 1725 ncRNA 163.5-119 chr9 11204636 11205037 + 0.75 NA Intergenic MLT1B|LTR|ERVL-MaLR 591630 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 154.75-93 chr7 77686539 77686879 + 0.75 NA intron (NR_134251, intron 1 of 3) intron (NR_134251, intron 1 of 3) 9556 NR_134251 100505854 Hs.72451 NR_038361 ENSG00000214293 APTR RSBN1L-AS1 Alu-mediated CDKN1A/p21 transcriptional regulator ncRNA 201.5-14 chr15 90722236 90722709 + 0.75 NA intron (NM_000057, intron 1 of 21) AluSx|SINE|Alu 5126 NM_001287248 641 Hs.725208 NM_000057 ENSG00000197299 BLM BS|MGRISCE1|RECQ2|RECQL2|RECQL3 BLM RecQ like helicase protein-coding 185-37 chr2 83544188 83544638 + 0.75 NA Intergenic Intergenic 21599 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 203-42 chr8 67276202 67276568 + 0.75 NA intron (NM_006421, intron 8 of 38) intron (NM_006421, intron 8 of 38) 67396 NM_006421 10565 Hs.656902 NM_006421 ENSG00000066777 ARFGEF1 ARFGEP1|BIG1|P200 ADP ribosylation factor guanine nucleotide exchange factor 1 protein-coding 181.5-10 chr10 66453332 66453808 + 0.75 NA intron (NM_001127384, intron 11 of 17) L1MD1|LINE|L1 -472466 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 165-67 chr5 44024076 44024421 + 0.75 NA Intergenic Intergenic -364484 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 186-9 chr14 51211413 51211840 + 0.75 NA Intergenic MIR|SINE|MIR -28621 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 215.75-41 chr8 125573383 125573987 + 0.75 NA Intergenic Intergenic 141476 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 156-49 chr3 5952293 5952649 + 0.75 NA Intergenic Intergenic -702216 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 182.25-38 chr3 176750144 176750548 + 0.75 NA Intergenic Intergenic 66655 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 187.75-5 chr10 37825141 37825415 + 0.75 NA intron (NM_001352493, intron 5 of 6) intron (NM_001352493, intron 5 of 6) -30103 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 244.5-29 chr7 28256123 28256543 + 0.75 NA Intergenic L1ME1|LINE|L1 -42988 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 166.5-57 chr4 35971814 35972043 + 0.75 NA Intergenic Intergenic 272011 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 149-12 chr11 107040447 107040870 + 0.75 NA Intergenic LTR4|LTR|ERV1 -22182 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 209.5-10 chr14 26619861 26620459 + 0.75 NA intron (NR_147061, intron 1 of 6) intron (NR_147061, intron 1 of 6) 21513 NR_147061 102725045 Hs.143441 NR_147061 LINC02588 C14orf22|NOVA1-AS1 long intergenic non-protein coding RNA 2588 ncRNA 173-40 chr2 235204736 235205135 + 0.75 NA Intergenic Intergenic 177200 NM_001371306 220-19 chr4 32582983 32583386 + 0.75 NA Intergenic Intergenic 232146 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 285.25-11 chr8 112138038 112138601 + 0.75 NA Intergenic L2a|LINE|L2 -505174 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 210.75-20 chr14 73355030 73355596 + 0.75 NA intron (NM_001005743, intron 4 of 12) intron (NM_001005743, intron 4 of 12) 103267 NM_003744 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 248.75-4 chr10 105649090 105649702 + 0.75 NA Intergenic Intergenic 170937 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 274.75-9 chr2 124219272 124219798 + 0.75 NA intron (NM_130773, intron 1 of 23) Tigger9b|DNA|TcMar-Tigger 194248 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 235.75-14 chr15 90808197 90808599 + 0.75 NA intron (NM_001287246, intron 20 of 22) L2|LINE|L2 -60190 NM_002569 5045 Hs.513153 NM_002569 ENSG00000140564 FURIN FUR|PACE|PCSK3|SPC1 furin, paired basic amino acid cleaving enzyme protein-coding 207.25-19 chr14 43108756 43109226 + 0.75 NA Intergenic L1MA9|LINE|L1 1398292 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 212-11 chr13 58174387 58174806 + 0.75 NA intron (NR_120416, intron 1 of 2) AluSz|SINE|Alu 8769 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 279.25-9 chr2 34057797 34058191 + 0.75 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) -9232 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 193.5-18 chr14 27113376 27113812 + 0.75 NA Intergenic L1PA16|LINE|L1 204952 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 194.75-53 chr9 38122702 38123119 + 0.75 NA Intergenic L1MB7|LINE|L1 -53683 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 193.5-4 chr1 154826989 154827378 + 0.75 NA intron (NM_001204087, intron 1 of 8) intron (NM_001204087, intron 1 of 8) 32693 NM_170782 3782 Hs.490765 NM_002249 ENSG00000143603 KCNN3 KCa2.3|SK3|SKCA3|hSK3 potassium calcium-activated channel subfamily N member 3 protein-coding 160.25-29 chr2 15633530 15633855 + 0.75 NA Intergenic Intergenic 41824 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 225.5-50 chr7 126538449 126538922 + 0.75 NA intron (NM_001371085, intron 8 of 10) intron (NM_001371085, intron 8 of 10) 519499 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 257.75-11 chr2 181975822 181976241 + 0.75 NA intron (NR_048567, intron 2 of 4) intron (NR_048567, intron 2 of 4) -9793 NM_001080545 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 216 chr1 68427410 68427822 + 0.75 NA Intergenic Intergenic 22338 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 188.25-6 chr10 63769321 63769804 + 0.75 NA Intergenic Intergenic -247672 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 171-72 chr9 85348297 85348631 + 0.75 NA Intergenic Intergenic 393565 NM_015239 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 231.25-21 chr18 70960597 70961119 + 0.75 NA Intergenic Intergenic -309904 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 172-78 chr7 8444223 8444639 + 0.75 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 10822 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 165.25-60 chr6 72255880 72256394 + 0.75 NA intron (NM_001350444, intron 11 of 21) intron (NM_001350444, intron 11 of 21) 39196 NM_001350473 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 165.5-20 chr12 13461740 13462223 + 0.75 NA Intergenic L1ME3B|LINE|L1 -85236 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 236.75-10 chr2 79688112 79688505 + 0.75 NA intron (NM_001282598, intron 2 of 17) L1MEd|LINE|L1 -38949 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 227.75-28 chr6 48346463 48346965 + 0.75 NA Intergenic Intergenic -278025 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 149.25-37 chr17 55467147 55467446 + 0.75 NA Intergenic Intergenic -45461 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 175.25-8 chr10 125687371 125687904 + 0.75 NA intron (NR_033848, intron 2 of 4) intron (NR_033848, intron 2 of 4) 4394 NR_033848 283038 Hs.144911 NR_033848 ENSG00000228021 LOC283038 - uncharacterized LOC283038 ncRNA 161.25-15 chr12 24350662 24351138 + 0.75 NA intron (NM_152989, intron 3 of 17) AluSz6|SINE|Alu 127629 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 273-6 chr2 50822653 50823448 + 0.75 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -126788 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 235.25-7 chr14 74447860 74448445 + 0.75 NA Intergenic L1ME1|LINE|L1 -21942 NM_001105579 646658 Hs.12400 NM_001105579 ENSG00000183379 SYNDIG1L CAPUCIN|DSPC1|IFITMD4|TMEM90A synapse differentiation inducing 1 like protein-coding 194.5-4 chr1 246556218 246556623 + 0.75 NA intron (NM_022366, intron 4 of 7) L1MB3|LINE|L1 9841 NM_022366 64216 Hs.7395 NM_022366 ENSG00000162851 TFB2M Hkp1|mtTFB2 transcription factor B2, mitochondrial protein-coding 204-35 chr4 105802392 105802814 + 0.75 NA intron (NM_001370181, intron 5 of 11) L1M6|LINE|L1 24569 NR_125927 101929529 Hs.603751 NR_125927 ENSG00000251175 LOC101929529 - uncharacterized LOC101929529 ncRNA 242.75-20 chr22 48282053 48282586 + 0.75 NA Intergenic L1MC2|LINE|L1 7955 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 232.5-51 chr8 109026678 109027338 + 0.75 NA Intergenic L1MC3|LINE|L1 -59620 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 214.75-28 chr2 228726543 228726930 + 0.75 NA Intergenic L1MEg|LINE|L1 -115341 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 168-4 chr1 77988670 77989141 + 0.75 NA intron (NM_001317099, intron 1 of 3) L2a|LINE|L2 8721 NM_001317099 11080 Hs.13852 NM_007034 ENSG00000162616 DNAJB4 DNAJW|DjB4|HLJ1 DnaJ heat shock protein family (Hsp40) member B4 protein-coding 204.75-18 chr16 70797940 70798272 + 0.75 NA intron (NM_018052, intron 1 of 18) MIR|SINE|MIR 3052 NM_001351157 55697 Hs.445061 NM_018052 ENSG00000103043 VAC14 ArPIKfyve|TAX1BP2|TRX VAC14 component of PIKFYVE complex protein-coding 198.75-56 chrX 78781623 78782172 + 0.75 NA Intergenic Intergenic 34177 NM_005296 2846 Hs.522701 NM_005296 ENSG00000147145 LPAR4 GPR23|LPA4|P2RY9|P2Y5-LIKE|P2Y9 lysophosphatidic acid receptor 4 protein-coding 277.5-12 chr3 56254871 56255546 + 0.75 NA intron (NR_132749, intron 3 of 17) intron (NR_132749, intron 3 of 17) 213259 NM_015576 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 201.75-24 chr2 210379442 210379812 + 0.75 NA intron (NR_110606, intron 1 of 4) L1M1|LINE|L1 54915 NR_110604 102724820 Hs.659232 NR_110604 LANCL1-AS1 LANCLOT LANCL1 antisense RNA 1 ncRNA 233.25-5 chr10 31308323 31308737 + 0.75 NA intron (NR_148978, intron 1 of 1) AluJb|SINE|Alu -9887 NM_001323638 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 167.75-65 chr4 84812469 84813029 + 0.75 NA intron (NM_014991, intron 13 of 67) intron (NM_014991, intron 13 of 67) -152867 NR_152774 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 222.75-29 chr4 96202292 96202747 + 0.75 NA Intergenic MIR|SINE|MIR -108184 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 205.5-30 chr3 49140146 49140471 + 0.75 NA Intergenic Intergenic -7258 NM_002292 3913 Hs.439726 NM_002292 ENSG00000172037 LAMB2 LAMS|NPHS5 laminin subunit beta 2 protein-coding 175.5-44 chr2 19161427 19161698 + 0.75 NA Intergenic L1MA9|LINE|L1 -134591 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 150.5-33 chr12 55206062 55206481 + 0.75 NA Intergenic L1MA5|LINE|L1 -14754 NM_001005280 121364 Hs.554557 NM_001005280 ENSG00000179919 OR10A7 OR12-6 olfactory receptor family 10 subfamily A member 7 protein-coding 213.75-3 chr1 100920525 100921067 + 0.75 NA intron (NM_133496, intron 7 of 10) intron (NM_133496, intron 7 of 10) 24706 NM_133496 148867 Hs.533903 NM_133496 ENSG00000162695 SLC30A7 ZNT7|ZnT-7|ZnTL2 solute carrier family 30 member 7 protein-coding 204-16 chr17 29165077 29165526 + 0.75 NA intron (NM_001346765, intron 2 of 42) intron (NM_001346765, intron 2 of 42) 11472 NM_001346767 399687 Hs.462590 NM_078471 ENSG00000196535 MYO18A MAJN|MYSPDZ|SP-R210|SPR210 myosin XVIIIA protein-coding 152.25-63 chr3 56081331 56081607 + 0.75 NA intron (NR_132749, intron 6 of 17) intron (NR_132749, intron 6 of 17) -228875 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 162.75-35 chr18 51445145 51445438 + 0.75 NA intron (NR_040074, intron 1 of 2) AluSp|SINE|Alu 53249 NR_040074 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 189.75-29 chr16 61623903 61624233 + 0.75 NA Intergenic Intergenic 412370 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 209.75-8 chr11 88258078 88258438 + 0.75 NA Intergenic L1PA14|LINE|L1 79478 NM_001814 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 218-23 chr6 98801632 98802266 + 0.75 NA Intergenic Intergenic 29751 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 182-35 chr20 59835318 59835892 + 0.75 NA intron (NM_080672, intron 8 of 12) intron (NM_080672, intron 8 of 12) 98032 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 204.75-27 chr2 175207013 175207353 + 0.75 NA Intergenic Intergenic -25473 NM_001689 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 284-10 chr8 19266536 19267125 + 0.75 NA Intergenic L1PA12|LINE|L1 -21308 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 188-38 chr21 15770136 15770607 + 0.75 NA intron (NM_001352561, intron 3 of 23) intron (NM_001352561, intron 3 of 23) 40389 NM_001283042 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 152-94 chr8 51002875 51003133 + 0.75 NA Intergenic L1MC2|LINE|L1 806441 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 184.5-20 chr11 79625593 79626045 + 0.75 NA Intergenic Intergenic -184789 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 237-21 chr9 90629279 90629983 + 0.75 NA intron (NM_017594, intron 1 of 1) MER2|DNA|TcMar-Tigger 13193 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 228.5-2 chr1 74204786 74205171 + 0.75 NA exon (NM_003838, exon 4 of 4) exon (NM_003838, exon 4 of 4) 6766 NM_001199328 8790 Hs.480085 NM_003838 ENSG00000254685 FPGT GFPP fucose-1-phosphate guanylyltransferase protein-coding 213-40 chrX 41879628 41880033 + 0.75 NA intron (NM_003688, intron 1 of 26) intron (NM_003688, intron 1 of 26) 43204 NM_003688 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 521 chr3 78226213 78227198 + 0.75 NA Intergenic Intergenic -177742 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 188-52 chr7 13326305 13326584 + 0.75 NA Intergenic L1ME2|LINE|L1 638811 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 319-3 chr12 22896127 22896937 + 0.75 NA Intergenic UCON15|Unknown|Unknown 271361 NM_001039481 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 192.25-32 chr2 39526777 39527174 + 0.75 NA intron (NR_037875, intron 5 of 5) L2b|LINE|L2 89559 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 231.25-7 chr10 94533188 94533698 + 0.75 NA 3' UTR (NM_015188, exon 13 of 13) 3' UTR (NM_015188, exon 13 of 13) -12324 NM_001289070 3070 Hs.463677 NM_018063 ENSG00000119969 HELLS ICF4|LSH|Nbla10143|PASG|SMARCA6 helicase, lymphoid specific protein-coding 158.75-39 chr2 51754353 51754711 + 0.75 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) -616116 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 193.5-39 chr2 81463607 81463922 + 0.75 NA intron (NR_110161, intron 1 of 2) intron (NR_110161, intron 1 of 2) 3182 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 233-6 chr11 68328348 68328848 + 0.75 NA intron (NM_002335, intron 1 of 22) intron (NM_002335, intron 1 of 22) 16007 NM_002335 4041 Hs.6347 NM_002335 ENSG00000162337 LRP5 BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP-7|LRP7|OPPG|OPS|OPTA1|PCLD4|VBCH2 LDL receptor related protein 5 protein-coding 219.5-6 chr12 17573284 17573641 + 0.75 NA Intergenic L1MA8|LINE|L1 15616 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 167.5-47 chr2 153108447 153108783 + 0.75 NA Intergenic MIRc|SINE|MIR 370147 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 199.25-3 chr10 75335030 75335519 + 0.75 NA intron (NR_038226, intron 2 of 3) intron (NR_038226, intron 2 of 3) 38891 NR_038223 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 223.5 chr1 22704057 22704382 + 0.75 NA Intergenic Intergenic -6619 NM_017449 2048 Hs.380705 NM_004442 ENSG00000133216 EPHB2 CAPB|DRT|EK5|EPHT3|ERK|Hek5|PCBC|Tyro5 EPH receptor B2 protein-coding 226.25-22 chr6 140792194 140792534 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL 108550 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 372.75-5 chr9 104757199 104757992 + 0.75 NA intron (NM_015469, intron 4 of 5) intron (NM_015469, intron 4 of 5) -6146 NR_130759 55335 Hs.429294 NM_018376 ENSG00000165028 NIPSNAP3B FP944|NIPSNAP3|SNAP1 nipsnap homolog 3B protein-coding 228.5-18 chr12 16778867 16779270 + 0.75 NA Intergenic Intergenic -170854 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 335.75-4 chr3 35725478 35726080 + 0.75 NA intron (NM_016300, intron 14 of 19) intron (NM_016300, intron 14 of 19) -18697 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 204.75-38 chr3 176134858 176135374 + 0.75 NA Intergenic Intergenic -109435 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 222.5-41 chr4 106284727 106285152 + 0.75 NA intron (NM_001290768, intron 3 of 26) intron (NM_001290768, intron 3 of 26) -30671 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 259-4 chr14 58880253 58880682 + 0.75 NA intron (NR_110547, intron 1 of 5) Tigger15a|DNA|TcMar-Tigger 52179 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 192.5-35 chr3 53970763 53971103 + 0.75 NA Intergenic Intergenic -79074 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 147.75-17 chr10 81806559 81806875 + 0.75 NA Intergenic L1MC1|LINE|L1 -68477 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 161.25-29 chr16 82980284 82980645 + 0.75 NA intron (NR_110937, intron 1 of 2) intron (NR_110937, intron 1 of 2) 9834 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 224.5-29 chr7 48455259 48455663 + 0.75 NA intron (NM_152701, intron 43 of 61) intron (NM_152701, intron 43 of 61) 284003 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 256.75-8 chr13 58177194 58177797 + 0.75 NA intron (NR_120416, intron 1 of 2) L1M1|LINE|L1 11668 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 211.5-25 chr2 52753910 52754314 + 0.75 NA Intergenic Intergenic -51497 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 154.5-50 chr2 204121804 204122164 + 0.75 NA Intergenic Intergenic 185236 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 213.25-3 chr1 114517565 114518175 + 0.75 NA Intergenic L2-1_AMi|LINE|L2 -6667 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 204-44 chr8 119791900 119792515 + 0.75 NA intron (NM_003184, intron 10 of 25) AluSx1|SINE|Alu 40634 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 165.25-42 chr4 32082763 32083162 + 0.75 NA intron (NR_125936, intron 1 of 2) L1PB3|LINE|L1 -60540 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 147.75-115 chr8 136117400 136117669 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -413264 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 232.25-33 chr8 124326188 124326639 + 0.75 NA intron (NM_194291, intron 3 of 6) intron (NM_194291, intron 3 of 6) 46286 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 157.5-36 chr16 19294832 19295192 + 0.75 NA intron (NM_001256720, intron 1 of 4) MER20|DNA|hAT-Charlie 9281 NM_001256720 728276 Hs.632180 NM_001256720 ENSG00000261210 CLEC19A - C-type lectin domain containing 19A protein-coding 170-17 chr13 95765040 95765389 + 0.75 NA intron (NM_006260, intron 9 of 11) intron (NM_006260, intron 9 of 11) 88075 NM_006260 5611 Hs.59214 NM_006260 ENSG00000102580 DNAJC3 ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI DnaJ heat shock protein family (Hsp40) member C3 protein-coding 236.25-16 chr2 117813606 117814275 + 0.75 NA promoter-TSS (NM_006773) promoter-TSS (NM_006773) -751 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 150.5-15 chr1 231920471 231920736 + 0.75 NA intron (NM_001164541, intron 9 of 9) L1MB3|LINE|L1 -5231 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 226.5-31 chr9 113300299 113300696 + 0.75 NA intron (NM_001371237, intron 3 of 4) L2a|LINE|L2 -1457 NM_145051 138065 Hs.729641 NM_145051 ENSG00000165188 RNF183 - ring finger protein 183 protein-coding 224.75-32 chr5 51440254 51440794 + 0.75 NA Intergenic Intergenic 57076 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 186.25-36 chr3 155684372 155684768 + 0.75 NA intron (NM_001349252, intron 2 of 24) intron (NM_001349252, intron 2 of 24) -8227 NM_001130960 23007 Hs.567423 NM_014996 ENSG00000114805 PLCH1 PLCL3 phospholipase C eta 1 protein-coding 203-45 chr8 130764390 130764703 + 0.75 NA Intergenic Intergenic 276363 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 226-23 chr5 150483122 150483590 + 0.75 NA intron (NR_105061, intron 2 of 2) intron (NR_105061, intron 2 of 2) 2636 NR_105061 102546298 Hs.570892 NR_105061 ENSG00000254333 NDST1-AS1 - NDST1 antisense RNA 1 ncRNA 182.25-56 chr7 110853283 110853614 + 0.75 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -237558 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 193-3 chr1 100716089 100716630 + 0.75 NA Intergenic MIRc|SINE|MIR -3281 NM_080682 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 228.5-40 chr5 14881015 14881412 + 0.75 NA Intergenic MLT1O|LTR|ERVL-MaLR -9435 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 269.5-8 chr12 74934623 74935154 + 0.75 NA Intergenic MIRb|SINE|MIR 274860 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 158-36 chr2 116392807 116393276 + 0.75 NA Intergenic Intergenic 1049226 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 213-38 chr9 91193138 91193622 + 0.75 NA Intergenic CpG 74318 NR_135306 100129347 Hs.522287 NR_135306 ENSG00000229694 LINC00484 C9orf73 long intergenic non-protein coding RNA 484 ncRNA 224.25-5 chr11 81027738 81028136 + 0.75 NA Intergenic Intergenic -265134 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 248.25-10 chr20 53233078 53233550 + 0.75 NA intron (NM_001193421, intron 1 of 2) L2a|LINE|L2 48031 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 316.25-6 chr9 31259149 31259955 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 121938 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 192-34 chr22 49319744 49320128 + 0.75 NA Intergenic L1MB8|LINE|L1 223530 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 175-51 chr7 85488342 85488668 + 0.75 NA intron (NR_134240, intron 3 of 3) L1MA9|LINE|L1 67383 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 224.5-32 chr7 111762008 111762373 + 0.75 NA intron (NM_001363540, intron 39 of 52) L1MB7|LINE|L1 -46315 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 160.5-94 chr5 84158196 84158555 + 0.75 NA intron (NM_001278642, intron 3 of 9) intron (NM_001278642, intron 3 of 9) 226492 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 250.75-29 chr8 104599601 104600051 + 0.75 NA Intergenic Intergenic -10802 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 249.25-8 chr17 40792140 40792546 + 0.75 NA 3' UTR (NM_181535, exon 8 of 8) 3' UTR (NM_181535, exon 8 of 8) 7616 NM_181535 162605 Hs.59736 NM_181535 ENSG00000173908 KRT28 K25IRS4|KRT25D keratin 28 protein-coding 215.25-24 chr21 18311002 18311348 + 0.75 NA intron (NM_002772, intron 18 of 24) L1M2|LINE|L1 65300 NM_001204174 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 173.5-12 chr10 66274199 66274612 + 0.75 NA intron (NM_001127384, intron 13 of 17) MER58B|DNA|hAT-Charlie -651631 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 221.75-18 chr18 62645481 62645973 + 0.75 NA Intergenic AluSq2|SINE|Alu -69814 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 190.25-27 chr3 154338483 154338947 + 0.75 NA intron (NM_001038705, intron 3 of 3) intron (NM_001038705, intron 3 of 3) -14218 NM_001114397 170506 Hs.446270 NM_020865 ENSG00000174953 DHX36 DDX36|G4R1|MLEL1|RHAU DEAH-box helicase 36 protein-coding 195.75-43 chr3 13770439 13770948 + 0.75 NA Intergenic Intergenic 109378 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 151-30 chr17 70293116 70293382 + 0.75 NA Intergenic Intergenic 123714 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 149.5-61 chr3 68272178 68272463 + 0.75 NA intron (NM_001252216, intron 2 of 4) MIRb|SINE|MIR -228317 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 226.5-20 chr3 110721707 110722197 + 0.75 NA Intergenic Intergenic 348007 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 278.75-6 chr2 197057231 197057719 + 0.75 NA intron (NM_001367496, intron 16 of 27) intron (NM_001367496, intron 16 of 27) -130768 NM_001321100 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 185-25 chr16 1828921 1829251 + 0.75 NA TTS (NM_031208) TTS (NM_031208) 1862 NM_001018104 81889 Hs.513265 NM_031208 ENSG00000180185 FAHD1 C16orf36|YISKL fumarylacetoacetate hydrolase domain containing 1 protein-coding 195.5-64 chr7 12232341 12232826 + 0.75 NA 3' UTR (NM_018374, exon 9 of 9) 3' UTR (NM_018374, exon 9 of 9) 21289 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 234.25-9 chr2 174094415 174094741 + 0.75 NA intron (NM_001011708, intron 6 of 9) L1MB7|LINE|L1 69298 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 212.25-46 chr8 56999435 56999877 + 0.75 NA Intergenic LTR40a|LTR|ERVL -5789 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 157-42 chr17 78647493 78647874 + 0.75 NA Intergenic Intergenic -15626 NR_110849 101928710 Hs.464224 NR_110848 ENSG00000267123 SCAT1 LINC02081|XLOC_012582 S-phase cancer associated transcript 1 ncRNA 147-58 chr21 27632021 27632272 + 0.75 NA Intergenic Intergenic -90233 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 206.25-35 chr5 131790498 131790899 + 0.75 NA intron (NM_133372, intron 1 of 17) intron (NM_133372, intron 1 of 17) 6319 NM_133372 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 197.5-17 chr14 52633336 52633779 + 0.75 NA exon (NM_001099652, exon 5 of 7) exon (NM_001099652, exon 5 of 7) 62001 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 282.25-3 chr11 134261989 134262678 + 0.75 NA intron (NM_014384, intron 9 of 10) intron (NM_014384, intron 9 of 10) 8793 NM_014384 27034 Hs.14791 NM_014384 ENSG00000151498 ACAD8 ACAD-8|ARC42 acyl-CoA dehydrogenase family member 8 protein-coding 191-17 chr12 14881456 14881931 + 0.75 NA 3' UTR (NM_001190839, exon 5 of 5) 3' UTR (NM_001190839, exon 5 of 5) 4161 NM_000900 4256 Hs.365706 NM_000900 ENSG00000111341 MGP GIG36|MGLAP|NTI matrix Gla protein protein-coding 176-8 chr10 98652867 98653255 + 0.75 NA intron (NM_021828, intron 6 of 11) L1MCa|LINE|L1 -206098 NM_001322487 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 160-93 chr9 87767758 87768099 + 0.75 NA Intergenic Intergenic -4987 NR_027917 392360 Hs.690450 NM_001023564 ENSG00000188029 CTSL3P CTSL3|HCTSL-s cathepsin L family member 3, pseudogene pseudo 160.25-65 chr6 144787562 144787849 + 0.75 NA intron (NM_007124, intron 60 of 73) intron (NM_007124, intron 60 of 73) 382050 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 179.5-77 chr8 71629112 71629559 + 0.75 NA Intergenic Intergenic -81241 NM_001370333 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 199.25 chr1 219205625 219206019 + 0.75 NA intron (NM_001300770, intron 3 of 4) intron (NM_001300770, intron 3 of 4) 30853 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 150.5-22 chr10 70773624 70773892 + 0.75 NA intron (NR_134531, intron 8 of 9) intron (NR_134531, intron 8 of 9) 8815 NR_134532 219793 Hs.386698 NM_152710 ENSG00000166220 TBATA C10orf27|SPATIAL thymus, brain and testes associated protein-coding 274.25-8 chr20 16103364 16103907 + 0.75 NA Intergenic Intergenic -117753 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 265-17 chr8 74395116 74395546 + 0.75 NA intron (NM_001362931, intron 5 of 5) intron (NM_001362931, intron 5 of 5) 44928 NM_001362931 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 276.5-2 chr1 197428152 197428774 + 0.75 NA intron (NM_001193640, intron 5 of 9) intron (NM_001193640, intron 5 of 9) 160211 NR_047564 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 506-2 chr2 139749687 139750954 + 0.75 NA Intergenic HAL1|LINE|L1 836365 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 205.5-12 chr13 63119889 63120359 + 0.75 NA Intergenic Intergenic 207970 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 195.5-72 chr8 142572734 142573107 + 0.75 NA Intergenic AluSz|SINE|Alu 41559 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1|hArc activity regulated cytoskeleton associated protein protein-coding 178.25-36 chr3 31465764 31466273 + 0.75 NA Intergenic Intergenic -66907 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 189-26 chr2 13100917 13101278 + 0.75 NA Intergenic Intergenic -94084 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 187.5-40 chr21 26398140 26398587 + 0.75 NA intron (NR_135516, intron 1 of 3) intron (NR_135516, intron 1 of 3) 4728 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 164-70 chr6 127178839 127179090 + 0.75 NA intron (NM_032784, intron 4 of 4) intron (NM_032784, intron 4 of 4) 60293 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 179.25-63 chr5 100326050 100326388 + 0.75 NA Intergenic Intergenic 62035 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 156-94 chr8 104561470 104561774 + 0.75 NA intron (NM_013437, intron 1 of 6) L1MC5a|LINE|L1 27402 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 184.25-39 chr21 17057642 17058196 + 0.75 NA Intergenic Intergenic -380971 NR_037585 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 237.5-16 chr2 139220916 139221346 + 0.75 NA Intergenic Intergenic 323807 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 157.5-61 chr3 129931008 129931346 + 0.75 NA Intergenic THE1C|LTR|ERVL-MaLR 37306 NR_037893 100507032 Hs.529562 NR_037893 ENSG00000271270 TMCC1-AS1 - TMCC1 antisense RNA 1 (head to head) ncRNA 247.25-20 chr7 46494006 46494467 + 0.75 NA Intergenic Intergenic 202886 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 152-81 chr6 56178646 56178970 + 0.75 NA intron (NM_030820, intron 3 of 29) intron (NM_030820, intron 3 of 29) 68772 NR_134850 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 254.5-10 chr15 87622647 87623130 + 0.75 NA Intergenic L1M4|LINE|L1 45959 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 182.5-29 chr2 128927394 128927900 + 0.75 NA Intergenic L1MC3|LINE|L1 63047 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 306-7 chr9 37131504 37132052 + 0.75 NA intron (NM_001289120, intron 2 of 8) Tigger20a|DNA|TcMar-Tigger 11180 NM_001289121 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 223.75-18 chr3 39944266 39944596 + 0.75 NA intron (NM_001284424, intron 2 of 15) L1ME4b|LINE|L1 134771 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 178-66 chr7 138711131 138711508 + 0.75 NA intron (NM_130840, intron 19 of 20) intron (NM_130840, intron 19 of 20) -32274 NM_001139456 136306 Hs.99414 NM_174959 ENSG00000157703 SVOPL - SVOP like protein-coding 251 chr1 119530443 119531012 + 0.75 NA Intergenic L1MC1|LINE|L1 23517 NM_000862 3283 Hs.364941 NM_000862 ENSG00000203857 HSD3B1 3BETAHSD|HSD3B|HSDB3|HSDB3A|SDR11E1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 protein-coding 209.75-20 chr2 77352116 77352644 + 0.75 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 169996 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 165.75-66 chr3 117868970 117869392 + 0.75 NA Intergenic L3b|LINE|CR1 -178256 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 196.25-33 chr2 122828149 122828675 + 0.75 NA Intergenic ERVL-B4-int|LTR|ERVL 245069 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 192.75-65 chr8 136078697 136079144 + 0.75 NA Intergenic Intergenic -451878 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 173.75-62 chr7 16058097 16058651 + 0.75 NA Intergenic Intergenic -152112 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 208.5-29 chr2 12867228 12867590 + 0.75 NA Intergenic MIR|SINE|MIR 130042 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 310.75-6 chr4 112071013 112071794 + 0.75 NA Intergenic Intergenic -74051 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 441.5-3 chr1 191007604 191008849 + 0.75 NA Intergenic Intergenic 220272 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 190-38 chr3 155293944 155294283 + 0.75 NA promoter-TSS (NM_001352129) promoter-TSS (NM_001352129) -430 NM_001352129 100507537 Hs.518341 NM_001352129 ENSG00000240045 STRIT1 DWORF small transmembrane regulator of ion transport 1 protein-coding 211.25-21 chr2 137666867 137667221 + 0.75 NA intron (NM_001316349, intron 26 of 27) intron (NM_001316349, intron 26 of 27) 260888 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 189.25-56 chr8 128129507 128129971 + 0.75 NA Intergenic L1M4a1|LINE|L1 -20377 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 158.25-90 chr5 95422071 95422549 + 0.75 NA intron (NM_152548, intron 5 of 9) (ATAT)n|Simple_repeat|Simple_repeat 30944 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 191.75-53 chr6 17649841 17650149 + 0.75 NA intron (NM_005124, intron 11 of 21) intron (NM_005124, intron 11 of 21) 49693 NM_016255 51439 Hs.95260 NM_016255 ENSG00000137414 FAM8A1 AHCP family with sequence similarity 8 member A1 protein-coding 263-10 chr2 222399934 222400502 + 0.75 NA Intergenic Intergenic -23770 NM_001320834 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 154-14 chr10 68333321 68333806 + 0.75 NA promoter-TSS (NM_022129) promoter-TSS (NM_022129) -635 NM_001033083 64081 Hs.198158 NM_022129 ENSG00000108187 PBLD HEL-S-306|MAWBP|MAWDBP phenazine biosynthesis like protein domain containing protein-coding 229.5-17 chr2 11169627 11170087 + 0.75 NA intron (NM_001282711, intron 4 of 5) AluSc|SINE|Alu 14390 NM_001282711 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 466.5-3 chr9 72943278 72944379 + 0.75 NA intron (NM_000689, intron 1 of 12) intron (NM_000689, intron 1 of 12) 9225 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 167.5-61 chr3 158431167 158431514 + 0.75 NA intron (NM_001271838, intron 6 of 9) intron (NM_001271838, intron 6 of 9) -95368 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 210.5-42 chr7 89445641 89445977 + 0.75 NA Intergenic Intergenic -650072 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 163-50 chr2 179817692 179817974 + 0.75 NA intron (NR_148056, intron 1 of 9) intron (NR_148056, intron 1 of 9) 43075 NR_031659 100302172 NR_031659 ENSG00000221240 MIR1258 MIRN1258|hsa-mir-1258|mir-1258 microRNA 1258 ncRNA 285.75-6 chr5 145252121 145252625 + 0.75 NA Intergenic MIR|SINE|MIR 582969 NM_138492 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 155-4 chr1 87827141 87827497 + 0.75 NA Intergenic Intergenic -455664 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 195.5-73 chr8 143338094 143338649 + 0.75 NA intron (NM_001258447, intron 1 of 13) AluSp|SINE|Alu -3491 NM_052963 116447 Hs.528574 NM_052963 ENSG00000184428 TOP1MT - DNA topoisomerase I mitochondrial protein-coding 175.5-96 chr9 78860846 78861317 + 0.75 NA Intergenic Intergenic 284585 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 206.5-10 chr11 93234680 93235063 + 0.75 NA Intergenic Intergenic -36880 NM_152313 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 154.75-48 chr2 157469461 157469884 + 0.75 NA Intergenic Intergenic -25583 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 224-30 chr8 103882823 103883176 + 0.75 NA intron (NR_145711, intron 1 of 21) intron (NR_145711, intron 1 of 21) 63779 NM_001348509 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 222.5-36 chr3 190155750 190156187 + 0.75 NA Intergenic Intergenic -33531 NM_001134418 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 241.25-7 chr12 30739939 30740404 + 0.75 NA intron (NM_001002259, intron 3 of 17) AluJo|SINE|Alu 14343 NM_001002259 65981 Hs.234355 NM_023925 ENSG00000110888 CAPRIN2 C1QDC1|EEG-1|EEG1|RNG140 caprin family member 2 protein-coding 238-5 chr11 67220821 67221273 + 0.75 NA intron (NR_027473, intron 10 of 20) Cheshire|DNA|hAT-Charlie -18967 NM_001256405 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 252.5-21 chr6 4875770 4876215 + 0.75 NA intron (NM_001143970, intron 1 of 6) L1ME2z|LINE|L1 -14048 NM_001143971 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y like protein-coding 228.75-9 chr15 90776882 90777426 + 0.75 NA intron (NM_001287246, intron 13 of 22) AluSq|SINE|Alu 59808 NM_001287248 641 Hs.725208 NM_000057 ENSG00000197299 BLM BS|MGRISCE1|RECQ2|RECQL2|RECQL3 BLM RecQ like helicase protein-coding 227.5-19 chr4 81918174 81918637 + 0.75 NA Intergenic MER5A|DNA|hAT-Charlie -446498 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 193.5-5 chr1 171536573 171536892 + 0.75 NA intron (NM_015172, intron 14 of 33) intron (NM_015172, intron 14 of 33) 51202 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 149-103 chr9 31171270 31171551 + 0.75 NA Intergenic Intergenic 210080 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 214.75-3 chr1 78346621 78347173 + 0.75 NA intron (NR_027310, intron 4 of 5) MamGypLTR3|LTR|Gypsy 117298 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 221.5-10 chr11 78993140 78993641 + 0.75 NA intron (NM_001098816, intron 6 of 33) L1MEc|LINE|L1 408719 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 170.75-32 chr2 54168542 54168962 + 0.75 NA intron (NM_138448, intron 3 of 3) intron (NM_138448, intron 3 of 3) 45469 NM_001320588 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 247-3 chr10 21996443 21996821 + 0.75 NA intron (NM_022365, intron 1 of 11) intron (NM_022365, intron 1 of 11) 7098 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 227.75-30 chr6 119423885 119424212 + 0.75 NA Intergenic L1PA7|LINE|L1 67254 NR_046100 285762 Hs.571063 NR_046100 LOC285762 - uncharacterized LOC285762 ncRNA 197.75-60 chr6 55468946 55469322 + 0.75 NA intron (NR_109869, intron 3 of 4) intron (NR_109869, intron 3 of 4) 110080 NM_001287753 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 201.25-34 chr3 143855056 143855532 + 0.75 NA Intergenic Intergenic -6826 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 193.25-63 chr8 129269413 129269803 + 0.75 NA Intergenic L1ME3A|LINE|L1 -28368 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 229.75-12 chr19 29997784 29998326 + 0.75 NA intron (NM_001252641, intron 4 of 10) L1MB2|LINE|L1 55816 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 199-23 chr3 44224389 44224786 + 0.75 NA Intergenic Intergenic -17299 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 243-9 chr2 106942660 106943248 + 0.75 NA Intergenic Intergenic -55845 NM_001142352 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 160.75-19 chr11 84456377 84456785 + 0.75 NA intron (NM_001142699, intron 7 of 27) L2a|LINE|L2 -139242 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 198.25-6 chr11 60543348 60543733 + 0.75 NA TTS (NM_001012417) TTS (NM_001012417) 28148 NM_001012417 503497 Hs.523704 NM_001012417 ENSG00000204979 MS4A13 - membrane spanning 4-domains A13 protein-coding 162.5-85 chr7 81060280 81060543 + 0.75 NA Intergenic MIRc|SINE|MIR -138022 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 235.5-25 chr4 51906403 51906959 + 0.75 NA intron (NM_015115, intron 8 of 9) intron (NM_015115, intron 8 of 9) 63102 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 193.25-11 chr10 90822543 90822886 + 0.75 NA intron (NM_019860, intron 1 of 2) MSTA-int|LTR|ERVL-MaLR 35325 NM_019859 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 256-6 chr2 208460775 208461372 + 0.75 NA intron (NM_005048, intron 9 of 12) intron (NM_005048, intron 9 of 12) 54243 NM_005048 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 156.5-24 chr10 104993976 104994250 + 0.75 NA intron (NM_014978, intron 4 of 26) L2c|LINE|L2 -327897 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 164-20 chr15 78535079 78535460 + 0.75 NA 3' UTR (NM_001013619, exon 5 of 5) 3' UTR (NM_001013619, exon 5 of 5) -5136 NM_001330675 5685 Hs.251531 NM_002789 ENSG00000041357 PSMA4 HC9|HsT17706|PSC9 proteasome subunit alpha 4 protein-coding 220.5-19 chr2 64961358 64961797 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL -26902 NM_001348407 6509 Hs.654352 NM_003038 ENSG00000115902 SLC1A4 ASCT1|SATT|SPATCCM solute carrier family 1 member 4 protein-coding 216-4 chr1 81241029 81241554 + 0.75 NA Intergenic Intergenic -64901 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 186.75-54 chr3 98773900 98774314 + 0.75 NA intron (NM_001271147, intron 6 of 9) intron (NM_001271147, intron 6 of 9) 10800 NM_001323367 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 193.75-17 chr12 48379879 48380340 + 0.75 NA Intergenic LTR52|LTR|ERVL -28863 NM_001172682 121274 Hs.23492 NM_152320 ENSG00000167528 ZNF641 - zinc finger protein 641 protein-coding 196.75-58 chr8 123784650 123785078 + 0.75 NA intron (NM_144963, intron 9 of 23) intron (NM_144963, intron 9 of 23) 16425 NM_001317917 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 327.75-10 chr7 85124876 85125696 + 0.75 NA Intergenic Eulor5A|DNA?|DNA? -3355 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 223.5-19 chr16 63203785 63204340 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger -1167624 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 270-19 chr8 129255401 129256152 + 0.75 NA Intergenic L2a|LINE|L2 -14536 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 191.25-34 chr2 21729442 21729765 + 0.75 NA Intergenic Intergenic -18951 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 270.75-2 chr1 114793227 114793709 + 0.75 NA Intergenic LTR38-int|LTR|ERV1 -12783 NM_025073 80143 Hs.709277 NM_025073 ENSG00000052723 SIKE1 SIKE suppressor of IKBKE 1 protein-coding 171.75-94 chr9 30024748 30025117 + 0.75 NA Intergenic MARNA|DNA|TcMar-Mariner 383522 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 218-5 chr11 81140763 81141142 + 0.75 NA Intergenic L1ME4a|LINE|L1 -378149 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 190.25-62 chr8 123342230 123342582 + 0.75 NA intron (NM_014109, intron 19 of 27) L3|LINE|CR1 -5628 NR_037516 100500863 NR_037516 ENSG00000207704 MIR548AA1 - microRNA 548aa-1 ncRNA 203.5-25 chr19 39678087 39678486 + 0.75 NA Intergenic Intergenic -1088 NR_034156 400696 Hs.456377 NM_207646 ENSG00000226025 LGALS17A - galectin 14 pseudogene pseudo 169.25-32 chr2 223599246 223599614 + 0.75 NA intron (NM_003469, intron 1 of 1) intron (NM_003469, intron 1 of 1) 2931 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 200.75-44 chr5 175053224 175053673 + 0.75 NA Intergenic Intergenic -57717 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 278.25-4 chr13 40530402 40530901 + 0.75 NA Intergenic L1MB8|LINE|L1 -49645 NR_024507 646982 Hs.287664 NR_024505 ENSG00000215483 LINC00598 lncFOXO1 long intergenic non-protein coding RNA 598 ncRNA 223.5-46 chr8 127641261 127641679 + 0.75 NA Intergenic Intergenic 92497 NR_117101 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 188.25-3 chr1 157205448 157205807 + 0.75 NA Intergenic L1MEi|LINE|L1 -67036 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 243-16 chr4 65568775 65569250 + 0.75 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 100476 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 155.5-43 chr2 35072024 35072292 + 0.75 NA Intergenic L1PA16|LINE|L1 394601 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 187.75-79 chrX 128799296 128799814 + 0.75 NA Intergenic Intergenic 723935 NM_001282874 6594 Hs.152292 NM_003069 ENSG00000102038 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 265.25-15 chr7 8055950 8056791 + 0.75 NA intron (NM_138426, intron 4 of 7) intron (NM_138426, intron 4 of 7) 87574 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 235-9 chr14 69514103 69514598 + 0.75 NA intron (NM_001161498, intron 6 of 12) L1MC1|LINE|L1 29622 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 160.75-54 chr18 75710079 75710460 + 0.75 NA intron (NR_134646, intron 1 of 1) L1MC|LINE|L1 2134 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 239.75-15 chr2 50400496 50400937 + 0.75 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -52960 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 314.75-5 chr4 94365967 94366619 + 0.75 NA Intergenic L1MA3|LINE|L1 -23457 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 209-18 chr18 70142006 70142542 + 0.75 NA intron (NM_173630, intron 19 of 48) intron (NM_173630, intron 19 of 48) 63413 NM_001318520 25914 Hs.654809 NM_173630 ENSG00000176225 RTTN MSSP rotatin protein-coding 220-23 chr4 99400057 99400637 + 0.75 NA Intergenic Intergenic 34787 NM_001166504 131 Hs.389 NM_000673 ENSG00000196344 ADH7 ADH4 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide protein-coding 170.75-34 chr2 147960832 147961152 + 0.75 NA intron (NM_001190881, intron 1 of 10) intron (NM_001190881, intron 1 of 10) 59745 NM_181741 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 169.5-70 chr4 122359844 122360138 + 0.75 NA intron (NM_015312, intron 83 of 83) intron (NM_015312, intron 83 of 83) -19020 NM_139243 132612 Hs.518957 NM_139243 ENSG00000164113 ADAD1 Tenr adenosine deaminase domain containing 1 protein-coding 308.75-8 chr3 119406075 119406745 + 0.75 NA intron (NM_020754, intron 10 of 11) L1MC5a|LINE|L1 57205 NM_018266 55254 Hs.594171 NM_018266 ENSG00000176142 TMEM39A - transmembrane protein 39A protein-coding 178.5-38 chr2 34864946 34865392 + 0.75 NA Intergenic L2a|LINE|L2 187612 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 263.25 chr1 180298563 180299001 + 0.75 NA intron (NM_032360, intron 7 of 7) intron (NM_032360, intron 7 of 7) -24101 NR_037642 100527964 Hs.496545 NR_037642 ENSG00000230124 LHX4-AS1 - LHX4 antisense RNA 1 ncRNA 202.5-19 chr15 68970238 68970728 + 0.75 NA intron (NM_001184780, intron 1 of 15) L1M4|LINE|L1 39958 NM_145658 246777 Hs.657932 NM_145658 ENSG00000258484 SPESP1 ESP|SP-ESP sperm equatorial segment protein 1 protein-coding 187.5-56 chr5 99046559 99047150 + 0.75 NA Intergenic L1MC5a|LINE|L1 -117140 NM_001364113 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 217-24 chr5 118853770 118854473 + 0.75 NA intron (NM_001308081, intron 4 of 5) intron (NM_001308081, intron 4 of 5) -120465 NR_036052 100302285 NR_036052 ENSG00000284378 MIR1244-1 MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1 microRNA 1244-1 ncRNA 164-84 chr8 117569880 117570372 + 0.75 NA Intergenic Intergenic 49413 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 233-22 chr4 32094432 32094998 + 0.75 NA intron (NR_125936, intron 1 of 2) L1MC2|LINE|L1 -72293 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 193.25-34 chr20 536637 537005 + 0.75 NA intron (NM_001362770, intron 1 of 14) intron (NM_001362770, intron 1 of 14) 6969 NM_001362771 1457 Hs.644056 NM_001895 ENSG00000101266 CSNK2A1 CK2A1|CKII|Cka1|Cka2|OCNDS casein kinase 2 alpha 1 protein-coding 176.5-66 chr5 57732393 57732748 + 0.75 NA Intergenic Intergenic 81910 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 269.25-15 chr6 49538178 49538643 + 0.75 NA Intergenic Intergenic -12258 NR_146853 135398 Hs.722010 NM_153344 ENSG00000197261 C6orf141 - chromosome 6 open reading frame 141 protein-coding 202-28 chr20 35333173 35333615 + 0.75 NA intron (NM_001184977, intron 5 of 7) intron (NM_001184977, intron 5 of 7) -40969 NM_178468 128876 Hs.592149 NM_178468 ENSG00000125998 FAM83C C20orf128|dJ614O4.7 family with sequence similarity 83 member C protein-coding 173.5-47 chr22 34728265 34728584 + 0.75 NA Intergenic L1MA10|LINE|L1 269492 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 168.5-55 chr2 126135909 126136378 + 0.75 NA Intergenic Intergenic -18158 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 220.25-29 chr4 46495652 46496239 + 0.75 NA Intergenic (ATATATA)n|Simple_repeat|Simple_repeat -105817 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 194.5-54 chr6 162622503 162622959 + 0.75 NA intron (NM_004562, intron 1 of 11) L1MEd|LINE|L1 -104401 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 214.75-25 chr2 116545275 116545720 + 0.75 NA Intergenic Intergenic 1201682 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 174.25-49 chr4 64250824 64251236 + 0.75 NA Intergenic Intergenic 158420 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 177.25-50 chr4 32749266 32749732 + 0.75 NA Intergenic Intergenic 398461 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 153.5-114 chr8 124636704 124637036 + 0.75 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 91603 NM_001363294 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 236.5-40 chr9 13435230 13435680 + 0.75 NA Intergenic Intergenic -4126 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 236-19 chr2 83983014 83983579 + 0.75 NA Intergenic Intergenic -307386 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 193.5-64 chr5 167722434 167722841 + 0.75 NA intron (NM_001368145, intron 1 of 26) AluSc|SINE|Alu -32292 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 155.25-46 chr2 165328684 165328941 + 0.75 NA intron (NM_001040143, intron 14 of 27) intron (NM_001040143, intron 14 of 27) 34757 NM_021007 6326 Hs.93485 NM_021007 ENSG00000136531 SCN2A BFIC3|BFIS3|BFNIS|EIEE11|HBA|HBSCI|HBSCII|NAC2|Na(v)1.2|Nav1.2|SCN2A1|SCN2A2 sodium voltage-gated channel alpha subunit 2 protein-coding 280.25-8 chr4 93213199 93213747 + 0.75 NA intron (NM_001286838, intron 4 of 14) intron (NM_001286838, intron 4 of 14) -615280 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 194.25-48 chr8 91548073 91548643 + 0.75 NA Intergenic MLT1G1|LTR|ERVL-MaLR 299039 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 176.5-20 chr15 57077621 57078050 + 0.75 NA intron (NM_001322158, intron 5 of 20) intron (NM_001322158, intron 5 of 20) -141595 NM_001306220 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 182.25-53 chr7 31898365 31898947 + 0.75 NA intron (NM_001322059, intron 3 of 17) L1ME4a|LINE|L1 171751 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 183-9 chr10 86862950 86863368 + 0.75 NA intron (NM_004329, intron 2 of 12) AluSx1|SINE|Alu -92600 NM_001330120 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 190.5-4 chr1 208197657 208198166 + 0.75 NA intron (NM_025179, intron 3 of 31) intron (NM_025179, intron 3 of 31) 46473 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 185-75 chrX 116491703 116492076 + 0.75 NA Intergenic L1MA4|LINE|L1 -28913 NM_001017978 203413 Hs.97892 NM_001017978 ENSG00000204019 CT83 CXorf61|KK-LC-1|KKLC1 cancer/testis antigen 83 protein-coding 223.25-41 chrX 55135591 55136035 + 0.75 NA Intergenic Intergenic 25289 NM_001166703 90736 Hs.415414 NM_138362 ENSG00000182518 FAM104B CXorf44 family with sequence similarity 104 member B protein-coding 162.75-43 chr2 206333989 206334283 + 0.75 NA Intergenic Charlie1a|DNA|hAT-Charlie 59126 NM_001285549 57683 Hs.110489 NM_020923 ENSG00000204186 ZDBF2 Slx9 zinc finger DBF-type containing 2 protein-coding 272-14 chr6 55013622 55014337 + 0.75 NA Intergenic Intergenic -92481 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 178.75-75 chrX 154298739 154299073 + 0.75 NA intron (NM_001145933, intron 1 of 12) AluSz6|SINE|Alu 3111 NM_001145933 8277 Hs.102866 NM_012253 ENSG00000007350 TKTL1 TKR|TKT2 transketolase like 1 protein-coding 221-30 chr6 94972685 94973102 + 0.75 NA Intergenic MLT2B3|LTR|ERVL 604558 NR_104136 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 183.75-96 chr8 121863266 121863573 + 0.75 NA Intergenic L1MA6|LINE|L1 -221979 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 209-30 chr3 77699982 77700327 + 0.75 NA Intergenic Intergenic 348809 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 218.75 chr1 4402797 4403167 + 0.75 NA Intergenic Intergenic -9069 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 160-18 chr14 26315323 26315599 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL 237969 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 176.75-32 chr2 22573829 22574155 + 0.75 NA Intergenic L1MA4|LINE|L1 37513 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 179-46 chr4 96574017 96574448 + 0.75 NA intron (NR_147149, intron 2 of 3) AluSq|SINE|Alu 263529 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 150.25-34 chr14 56825335 56825659 + 0.75 NA intron (NR_146411, intron 2 of 2) intron (NR_146411, intron 2 of 2) 12339 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 191.75-25 chr15 33852256 33852663 + 0.75 NA intron (NM_001243996, intron 93 of 102) intron (NM_001243996, intron 93 of 102) -116038 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 168.75-5 chr1 194796014 194796297 + 0.75 NA Intergenic Intergenic 1292560 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 146.25-100 chr8 118848748 118849090 + 0.75 NA Intergenic MIRb|SINE|MIR 102966 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 179-63 chr8 124747713 124748100 + 0.75 NA Intergenic L1MB7|LINE|L1 -19399 NM_001282974 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 197.75-58 chr5 139410105 139410639 + 0.75 NA 3' UTR (NM_152686, exon 8 of 8) 3' UTR (NM_152686, exon 8 of 8) -6285 NM_194296 202051 Hs.373612 NM_194296 ENSG00000170469 SPATA24 CCDC161|T6441 spermatogenesis associated 24 protein-coding 172.75-23 chr15 61865266 61865667 + 0.75 NA 3' UTR (NM_018080, exon 80 of 80) 3' UTR (NM_018080, exon 80 of 80) 135548 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 257.25-4 chr1 232860677 232861289 + 0.75 NA Intergenic Intergenic 56091 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule associated protein 10 protein-coding 168-44 chr22 20659654 20660135 + 0.75 NA Intergenic L1M1|LINE|L1 -29661 NR_024592 266697 Hs.558711 NR_024592 POM121L4P - POM121 transmembrane nucleoporin like 4, pseudogene pseudo 183.75-55 chr21 19783524 19783945 + 0.75 NA Intergenic THE1B-int|LTR|ERVL-MaLR 116021 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 164-79 chr7 50768493 50768784 + 0.75 NA intron (NM_001001555, intron 1 of 16) intron (NM_001001555, intron 1 of 16) 14258 NM_001350814 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 150-88 chr8 109357925 109358221 + 0.75 NA Intergenic Intergenic -4388 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 164-73 chr6 157079435 157079900 + 0.75 NA intron (NM_001363725, intron 2 of 17) intron (NM_001363725, intron 2 of 17) 43240 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 211.5-24 chr2 44311131 44311677 + 0.75 NA intron (NM_000341, intron 7 of 9) L1MB4|LINE|L1 35924 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 202-54 chr9 33003690 33004079 + 0.75 NA intron (NM_001368996, intron 1 of 7) L1MB3|LINE|L1 -2243 NR_036577 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 197-13 chr18 64962541 64962926 + 0.75 NA Intergenic L1MC5a|LINE|L1 -702678 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 194-37 chr4 163739413 163739776 + 0.75 NA intron (NM_001166373, intron 3 of 7) intron (NM_001166373, intron 3 of 7) -126060 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 162.25-24 chr16 59470380 59470649 + 0.75 NA Intergenic Intergenic 284677 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 151.25-31 chr17 53512824 53513165 + 0.75 NA Intergenic MLT1K|LTR|ERVL-MaLR -309933 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 224.75-5 chr10 65412304 65412658 + 0.75 NA Intergenic MLT2D|LTR|ERVL -158944 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 209.5-42 chr5 147925040 147925462 + 0.75 NA Intergenic MSTB1|LTR|ERVL-MaLR -18713 NM_206966 389336 Hs.660038 NM_206966 ENSG00000178776 C5orf46 SSSP1 chromosome 5 open reading frame 46 protein-coding 151-3 chr1 200667364 200667628 + 0.75 NA promoter-TSS (NM_001349800) promoter-TSS (NM_001349800) -556 NM_001349800 83479 Hs.497332 NM_031306 ENSG00000118197 DDX59 OFD5|ZNHIT5 DEAD-box helicase 59 protein-coding 163-16 chr11 35728584 35728817 + 0.75 NA intron (NM_017583, intron 3 of 4) intron (NM_017583, intron 3 of 4) 65925 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 174.25-76 chr9 69532712 69533081 + 0.75 NA intron (NM_001163, intron 1 of 12) L1ME4b|LINE|L1 139475 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 155-102 chr8 77325829 77326221 + 0.75 NA Intergenic L1M2|LINE|L1 -124672 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 177.75-44 chr22 43852138 43852459 + 0.75 NA intron (NM_014351, intron 1 of 6) AluJo|SINE|Alu 10215 NM_014351 25830 Hs.189810 NM_014351 ENSG00000130540 SULT4A1 BR-STL-1|BRSTL1|DJ388M5.3|NST|SULTX3|hBR-STL-1 sulfotransferase family 4A member 1 protein-coding 183.25-56 chr4 101861829 101862219 + 0.75 NA intron (NM_017935, intron 3 of 16) intron (NM_017935, intron 3 of 16) 48182 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 147.75-98 chr6 165640149 165640541 + 0.75 NA intron (NM_006661, intron 1 of 22) intron (NM_006661, intron 1 of 22) 21755 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 167.5-72 chr5 20098703 20099152 + 0.75 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -110727 NM_001349561 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 191.25-49 chr3 87383455 87383905 + 0.75 NA Intergenic MER33|DNA|hAT-Charlie -107096 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 155.5-72 chr4 48464618 48464913 + 0.75 NA Intergenic L2c|LINE|L2 -18578 NM_152679 201780 Hs.132591 NM_152679 ENSG00000145248 SLC10A4 P4 solute carrier family 10 member 4 protein-coding 216.25-12 chr14 60665165 60665505 + 0.75 NA Intergenic Intergenic -15858 NM_005982 6495 Hs.633506 NM_005982 ENSG00000126778 SIX1 BOS3|DFNA23|TIP39 SIX homeobox 1 protein-coding 234.25 chr10 65559565 65559892 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -11697 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 187.25-56 chr6 92415097 92415363 + 0.75 NA Intergenic L1M5|LINE|L1 -724802 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 219.75-3 chr1 151697398 151697820 + 0.75 NA 3' UTR (NM_001330723, exon 12 of 12) 3' UTR (NM_001330723, exon 12 of 12) 19194 NM_001291107 11189 Hs.26047 NM_007185 ENSG00000159409 CELF3 BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4 CUGBP Elav-like family member 3 protein-coding 157.75-28 chr13 49148562 49149006 + 0.75 NA intron (NM_001079673, intron 8 of 25) L1M2|LINE|L1 38467 NM_014923 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 218.75-16 chr3 96102291 96102791 + 0.75 NA Intergenic L1PA17|LINE|L1 -257423 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 190-40 chr4 20537033 20537430 + 0.75 NA intron (NM_001289135, intron 17 of 35) Tigger3b|DNA|TcMar-Tigger 8956 NR_029631 407000 NR_029631 ENSG00000207732 MIR218-1 MIRN218-1|mir-218-1 microRNA 218-1 ncRNA 298.5-10 chr8 81451968 81452645 + 0.75 NA Intergenic L2a|LINE|L2 -4867 NM_002677 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 192.75-71 chr9 106977027 106977645 + 0.75 NA intron (NR_126029, intron 4 of 4) intron (NR_126029, intron 4 of 4) 114170 NM_021224 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 197.25-29 chr2 138488337 138488734 + 0.75 NA Intergenic L2|LINE|L2 -13235 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 162.5-35 chr17 65974168 65974392 + 0.75 NA intron (NM_001353129, intron 17 of 26) AluJb|SINE|Alu -147737 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 171.5-73 chr4 51905492 51905859 + 0.75 NA intron (NM_015115, intron 8 of 9) intron (NM_015115, intron 8 of 9) 62096 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 209.25-31 chr3 122058008 122058596 + 0.75 NA intron (NM_001206925, intron 1 of 5) intron (NM_001206925, intron 1 of 5) 2940 NM_175862 942 Hs.171182 NM_006889 ENSG00000114013 CD86 B7-2|B7.2|B70|CD28LG2|LAB72 CD86 molecule protein-coding 169.75-43 chr2 222409561 222409993 + 0.75 NA Intergenic L1PA15|LINE|L1 -14211 NM_001320834 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 246.25-24 chr21 29860580 29861279 + 0.75 NA intron (NM_000830, intron 1 of 16) MER33|DNA|hAT-Charlie 79067 NM_001330994 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 239.25-11 chr18 69181121 69181602 + 0.75 NA Intergenic Intergenic -219527 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 165.75-50 chr2 213555519 213555945 + 0.75 NA intron (NR_047660, intron 9 of 14) L1M1|LINE|L1 -202335 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 187.75-37 chr2 140761341 140761781 + 0.75 NA intron (NM_018557, intron 35 of 90) MLT1F2|LTR|ERVL-MaLR -174876 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 161-88 chr8 79367396 79367843 + 0.75 NA Intergenic Intergenic 35431 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 201.75-9 chr12 39346668 39346974 + 0.75 NA intron (NM_001173464, intron 11 of 37) intron (NM_001173464, intron 11 of 37) 96299 NM_001173464 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 246-4 chr17 60403195 60403646 + 0.75 NA Intergenic MLT1G1|LTR|ERVL-MaLR -11287 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 202.5-37 chr3 15813754 15814116 + 0.75 NA intron (NM_015199, intron 1 of 27) intron (NM_015199, intron 1 of 27) -15751 NR_146111 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 236.5-36 chr8 69734502 69735104 + 0.75 NA intron (NM_001146009, intron 3 of 7) intron (NM_001146009, intron 3 of 7) 98366 NM_001146009 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 168.5-70 chr3 185113617 185113900 + 0.75 NA intron (NM_001025266, intron 1 of 1) intron (NM_001025266, intron 1 of 1) 39302 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 160-22 chr14 86981365 86981698 + 0.75 NA Intergenic Intergenic 75753 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 200.75-14 chr14 27646131 27646636 + 0.75 NA intron (NR_148991, intron 2 of 2) intron (NR_148991, intron 2 of 2) -13105 NR_130461 100422830 NR_130461 ENSG00000264657 MIR3171 - microRNA 3171 ncRNA 194.5-26 chr15 96209861 96210183 + 0.75 NA intron (NR_125738, intron 2 of 4) intron (NR_125738, intron 2 of 4) -82181 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 188-36 chr20 14169110 14169665 + 0.75 NA intron (NM_001351663, intron 3 of 17) AluSp|SINE|Alu 168225 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 164-49 chr3 125224802 125225123 + 0.75 NA TTS (NM_021964) TTS (NM_021964) -12197 NM_024628 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 149.25-24 chr13 63340438 63340736 + 0.75 NA Intergenic MIR|SINE|MIR -12493 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 212.75-17 chr2 170089543 170089962 + 0.75 NA Intergenic L1MC4a|LINE|L1 -88395 NM_138995 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 263.75-15 chr4 106200191 106200671 + 0.75 NA intron (NM_001290768, intron 21 of 26) AluJr|SINE|Alu -115179 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 199.5-32 chr3 169343660 169344049 + 0.75 NA intron (NM_001205194, intron 1 of 15) intron (NM_001205194, intron 1 of 15) -104013 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 272.25-11 chr4 33736545 33736983 + 0.75 NA Intergenic MLT2A2|LTR|ERVL 303129 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 182.25-33 chr21 29709802 29710186 + 0.75 NA intron (NM_000830, intron 1 of 16) L1ME4a|LINE|L1 -38181 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 203.75-15 chr2 211372818 211373316 + 0.75 NA Intergenic Intergenic 755496 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 224-8 chr10 72707934 72708517 + 0.75 NA intron (NM_001270680, intron 1 of 7) intron (NM_001270680, intron 1 of 7) -12804 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 149.75-35 chr19 53011073 53011483 + 0.75 NA Intergenic MER50-int|LTR|ERV1 -2813 NM_152473 147664 Hs.44329 NM_152473 ENSG00000269526 ERVV-1 ENVV1|HERV-V1 endogenous retrovirus group V member 1, envelope protein-coding 146.25-65 chr3 126445538 126445911 + 0.75 NA intron (NR_104249, intron 6 of 8) intron (NR_104249, intron 6 of 8) 30167 NM_025112 79364 Hs.440049 NM_025112 ENSG00000070476 ZXDC ZXDL ZXD family zinc finger C protein-coding 249.25-13 chr4 63864794 63865286 + 0.75 NA Intergenic L1ME3B|LINE|L1 544410 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 215.75-25 chr4 94199976 94200532 + 0.75 NA intron (NR_125922, intron 1 of 8) intron (NR_125922, intron 1 of 8) 7302 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 213.25-43 chr7 69058276 69058872 + 0.75 NA Intergenic MER47C|DNA|TcMar-Tigger 539050 NR_148926 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 254.75-17 chr3 131088267 131088835 + 0.75 NA intron (NM_001353043, intron 4 of 17) intron (NM_001353043, intron 4 of 17) 60823 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 236.75 chr1 67989881 67990273 + 0.75 NA intron (NR_040077, intron 1 of 9) MIR|SINE|MIR 61554 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 188.25-62 chr8 83050933 83051381 + 0.75 NA Intergenic Intergenic 139053 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 180.25-10 chr11 21569316 21569918 + 0.75 NA intron (NM_201551, intron 16 of 18) L3b|LINE|CR1 -623468 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 207.5-44 chr8 121603825 121604272 + 0.75 NA Intergenic Intergenic -35298 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 178-30 chr18 2549672 2550183 + 0.75 NA intron (NM_022840, intron 5 of 8) AluSq2|SINE|Alu 21578 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 203.25-24 chr2 177810679 177811268 + 0.75 NA intron (NM_001077197, intron 10 of 20) intron (NM_001077197, intron 10 of 20) 77783 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 251.75-23 chr5 123562282 123562694 + 0.75 NA intron (NM_001044723, intron 3 of 12) L3|LINE|CR1 17071 NM_001270572 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 177.5-11 chr11 74957768 74958149 + 0.75 NA intron (NM_014752, intron 1 of 4) intron (NM_014752, intron 1 of 4) 8692 NM_014752 9789 Hs.282700 NM_014752 ENSG00000118363 SPCS2 - signal peptidase complex subunit 2 protein-coding 251.25-22 chr4 62149828 62150465 + 0.75 NA intron (NR_110595, intron 2 of 7) intron (NR_110595, intron 2 of 7) 11619 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 214-13 chr16 72349161 72349669 + 0.75 NA intron (NR_126330, intron 8 of 13) intron (NR_126330, intron 8 of 13) -176965 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 166.5-70 chr6 4071321 4071699 + 0.75 NA intron (NM_173563, intron 6 of 6) MIR|SINE|MIR 7627 NM_173563 222826 Hs.657342 NM_173563 ENSG00000145975 FAM217A C6orf146 family with sequence similarity 217 member A protein-coding 226-24 chr6 55285511 55285870 + 0.75 NA Intergenic Intergenic -41779 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 180.75-64 chr7 95604199 95604484 + 0.75 NA Intergenic Intergenic -7825 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 147.5-49 chr2 198835242 198835655 + 0.75 NA Intergenic Intergenic -460351 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 237.75-17 chr4 94563624 94564042 + 0.75 NA intron (NM_001011516, intron 3 of 9) intron (NM_001011516, intron 3 of 9) 111891 NM_001256427 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 234-17 chr6 116514636 116515266 + 0.75 NA intron (NM_153711, intron 1 of 1) intron (NM_153711, intron 1 of 1) 3312 NM_153711 254228 Hs.105081 NM_153711 ENSG00000178033 CALHM5 C6orf188|FAM26E|dJ493F7.3 calcium homeostasis modulator family member 5 protein-coding 185-46 chr3 116570462 116570833 + 0.75 NA Intergenic L1MB8|LINE|L1 18174 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 169.5-43 chr2 43703951 43704378 + 0.75 NA intron (NM_172069, intron 9 of 29) L1MB2|LINE|L1 -27735 NM_001101330 728819 NM_001101330 ENSG00000223658 C1GALT1C1L - C1GALT1 specific chaperone 1 like protein-coding 194.25-22 chr2 188822550 188823006 + 0.75 NA Intergenic L1M4|LINE|L1 -32655 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 183.75-12 chr10 110240921 110241365 + 0.75 NA intron (NM_001008541, intron 2 of 4) intron (NM_001008541, intron 2 of 4) 15147 NM_005962 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 246-10 chr5 117423416 117423768 + 0.75 NA intron (NR_046089, intron 1 of 5) L1M4b|LINE|L1 8080 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 202.75-15 chr12 56699018 56699402 + 0.75 NA Intergenic MER41B|LTR|ERV1 -10802 NM_001282604 10728 Hs.50425 NM_006601 ENSG00000110958 PTGES3 P23|TEBP|cPGES prostaglandin E synthase 3 protein-coding 183-43 chr5 163261909 163262415 + 0.75 NA Intergenic Intergenic -175409 NM_001364019 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 201.25-25 chr2 145868736 145869156 + 0.75 NA Intergenic Intergenic -718111 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 319.5-11 chr7 11614764 11615540 + 0.75 NA intron (NM_015204, intron 2 of 26) LTR67B|LTR|ERVL 217046 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 258-7 chr14 46307620 46308200 + 0.75 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -163449 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 165.25-70 chr9 21730290 21730637 + 0.75 NA Intergenic L2c|LINE|L2 -72173 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 160.5-41 chr16 61671315 61671586 + 0.75 NA intron (NM_001796, intron 10 of 11) intron (NM_001796, intron 10 of 11) 364988 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 283-10 chr5 111500462 111501043 + 0.75 NA non-coding (NR_131752, exon 4 of 4) non-coding (NR_131752, exon 4 of 4) -11474 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 210.25-34 chr5 52414401 52414802 + 0.75 NA Intergenic Intergenic -373315 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 148-65 chr3 121737786 121738242 + 0.75 NA intron (NM_001256486, intron 1 of 21) intron (NM_001256486, intron 1 of 21) 11727 NM_004487 2804 Hs.213389 NM_004487 ENSG00000173230 GOLGB1 GCP|GCP372|GOLIM1 golgin B1 protein-coding 305.5 chr11 82179325 82180113 + 0.75 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 224194 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 196.75-33 chr3 38558795 38559102 + 0.75 NA intron (NM_198056, intron 23 of 27) intron (NM_198056, intron 23 of 27) 62608 NM_005107 9941 Hs.517897 NM_005107 ENSG00000157036 EXOG ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB exo/endonuclease G protein-coding 260.5-14 chr6 82577989 82578535 + 0.75 NA Intergenic L1MC3|LINE|L1 214018 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 179.25-13 chr11 6583782 6584116 + 0.75 NA Intergenic L1MA3|LINE|L1 19667 NM_015324 23378 Hs.652255 NM_015324 ENSG00000132275 RRP8 KIAA0409|NML ribosomal RNA processing 8 protein-coding 208.75-4 chr1 234910612 234910997 + 0.75 NA Intergenic Intergenic 53195 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 283-7 chr2 137470133 137470849 + 0.75 NA intron (NM_001316349, intron 15 of 27) intron (NM_001316349, intron 15 of 27) 457441 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 155.5-84 chr5 144690491 144690902 + 0.75 NA Intergenic L2a|LINE|L2 485305 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 227-15 chr4 15751291 15751756 + 0.75 NA Intergenic Intergenic -26805 NR_132660 952 Hs.479214 NM_001775 ENSG00000004468 CD38 ADPRC 1|ADPRC1 CD38 molecule protein-coding 148.5-54 chr21 24965193 24965463 + 0.75 NA intron (NR_046198, intron 2 of 3) L1MD|LINE|L1 124778 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 161.75-5 chr10 34270640 34271085 + 0.75 NA intron (NM_001184789, intron 19 of 22) intron (NM_001184789, intron 19 of 22) -498182 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 204-45 chr9 116205902 116206270 + 0.75 NA intron (NM_002581, intron 2 of 21) intron (NM_002581, intron 2 of 21) 52295 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 183-63 chrX 46919797 46920188 + 0.75 NA intron (NM_014735, intron 1 of 10) L1MC|LINE|L1 7571 NM_014735 9767 Hs.371977 NM_014735 ENSG00000102221 JADE3 JADE-3|PHF16 jade family PHD finger 3 protein-coding 247.5-17 chr15 58106775 58107365 + 0.75 NA Intergenic HAL1M8|LINE|L1 -31099 NM_001320636 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 242.75-22 chr4 33387411 33388053 + 0.75 NA Intergenic Intergenic 652161 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 234.5-29 chr9 24269647 24270019 + 0.75 NA Intergenic Intergenic 275843 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 163.75-76 chr9 107874226 107874591 + 0.75 NA Intergenic Intergenic -384639 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 205-18 chr15 36814917 36815333 + 0.75 NA intron (NR_027320, intron 2 of 3) intron (NR_027320, intron 2 of 3) 3381 NR_027320 161635 Hs.659822 NR_027320 CSNK1A1P1 CSNK1A1P casein kinase 1 alpha 1 pseudogene 1 pseudo 310-3 chr7 16980113 16980747 + 0.75 NA Intergenic MLT1K|LTR|ERVL-MaLR -98447 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 186.75-62 chr4 49154456 49155005 + 0.75 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 168088 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 212-33 chr6 46971151 46971655 + 0.75 NA Intergenic L2c|LINE|L2 -16464 NM_015234 221395 Hs.362806 NM_015234 ENSG00000069122 ADGRF5 GPR116|KPG_001 adhesion G protein-coupled receptor F5 protein-coding 186-25 chr2 193763371 193763639 + 0.75 NA Intergenic Intergenic -580764 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 183.75-78 chr6 1419197 1419598 + 0.75 NA Intergenic AluJb|SINE|Alu -28986 NR_106778 102466720 NR_106778 ENSG00000275859 MIR6720 hsa-mir-6720|mir-6720 microRNA 6720 ncRNA 192.5-50 chr6 5390225 5390739 + 0.75 NA intron (NM_006567, intron 2 of 6) intron (NM_006567, intron 2 of 6) 67593 NR_125846 101927972 Hs.668417 NR_125846 ENSG00000269985 LOC101927972 - uncharacterized LOC101927972 ncRNA 152-14 chr11 22011700 22012153 + 0.75 NA Intergenic Intergenic -181159 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 199-32 chr6 20563700 20564014 + 0.75 NA intron (NM_017774, intron 4 of 15) intron (NM_017774, intron 4 of 15) 29400 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 202.5-26 chr19 12931268 12931675 + 0.75 NA intron (NM_004461, intron 1 of 12) AluSg|SINE|Alu 949 NR_149078 106144598 Hs.579870 NR_149078 ENSG00000266975 FARSA-AS1 - FARSA antisense RNA 1 ncRNA 186-23 chr2 128843064 128843458 + 0.75 NA Intergenic L1PB4|LINE|L1 -21339 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 379.5-2 chr10 36464322 36465261 + 0.75 NA Intergenic Intergenic -661066 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 177.75-61 chr5 105083862 105084271 + 0.75 NA Intergenic Intergenic -15408 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 331.5-9 chr8 126517621 126518367 + 0.75 NA Intergenic Intergenic 40484 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 161.25-73 chr8 125262448 125262771 + 0.75 NA intron (NM_001349486, intron 5 of 7) MIR|SINE|MIR -167749 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 191-2 chr1 83104331 83104825 + 0.75 NA intron (NR_147074, intron 9 of 10) LTR16A|LTR|ERVL -118370 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 186.25-45 chr4 146921498 146921948 + 0.75 NA intron (NR_133922, intron 4 of 13) intron (NR_133922, intron 4 of 13) 24141 NR_133922 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 153.75-61 chr5 39751244 39751537 + 0.75 NA Intergenic L1M4c|LINE|L1 230959 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 299.25-2 chr11 102169680 102170365 + 0.75 NA intron (NM_001282097, intron 3 of 7) intron (NM_001282097, intron 3 of 7) 57574 NM_001195045 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 149.75-104 chr8 134953718 134954151 + 0.75 NA Intergenic Intergenic 103999 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 164.25-55 chr22 30063520 30063852 + 0.75 NA intron (NR_110541, intron 1 of 4) L1MB7|LINE|L1 16571 NR_110541 101929664 Hs.592197 NR_110541 HORMAD2-AS1 MTMR3-AS1 HORMAD2 and MTMR3 antisense RNA 1 ncRNA 260.5-6 chr14 47314174 47314943 + 0.75 NA intron (NM_001113498, intron 1 of 16) AluJr|SINE|Alu 28688 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 330.75-3 chr12 30283954 30284772 + 0.75 NA Intergenic Intergenic 392881 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 172.75-16 chr12 14619767 14620179 + 0.75 NA TTS (NR_120465) TTS (NR_120465) -52090 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 202.5-61 chr8 99098806 99099260 + 0.75 NA intron (NR_047582, intron 5 of 8) L1ME4a|LINE|L1 85767 NM_015243 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 224-25 chr4 80752981 80753303 + 0.75 NA intron (NM_001206997, intron 4 of 6) L1MCa|LINE|L1 -277566 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 153.25-117 chr9 88435716 88436105 + 0.75 NA intron (NM_006717, intron 2 of 5) intron (NM_006717, intron 2 of 5) 47466 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 203.5-19 chr16 76293933 76294372 + 0.75 NA intron (NR_136213, intron 1 of 23) L2c|LINE|L2 -15700 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 203.5-31 chr20 37145746 37146130 + 0.75 NA intron (NM_152503, intron 10 of 24) Tigger3b|DNA|TcMar-Tigger -33108 NM_001324306 6185 Hs.370895 NM_002951 ENSG00000118705 RPN2 RIBIIR|RPN-II|RPNII|SWP1 ribophorin II protein-coding 155.25-44 chr2 101530526 101530965 + 0.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -55633 NM_001367508 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 167.5-23 chr14 54429882 54430263 + 0.75 NA intron (NM_005776, intron 4 of 4) intron (NM_005776, intron 4 of 4) 11302 NM_005776 10175 Hs.294603 NM_005776 ENSG00000100528 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 184.5-4 chr1 45224897 45225386 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL -18536 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 193.5-56 chr4 168009188 168009490 + 0.75 NA Intergenic Intergenic -83198 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 182.25-22 chr2 52073393 52073793 + 0.75 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -297055 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 174.75-28 chr17 61851166 61851470 + 0.75 NA intron (NM_032043, intron 4 of 19) intron (NM_032043, intron 4 of 19) 12241 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 227.75-16 chr2 115039621 115039965 + 0.75 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -24780 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 166.75-12 chr10 77158888 77159373 + 0.75 NA intron (NM_001271519, intron 5 of 28) intron (NM_001271519, intron 5 of 28) 18299 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 158-91 chr8 77525721 77525974 + 0.75 NA Intergenic LFSINE_Vert|SINE|tRNA 75150 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 182.25-16 chr2 6179161 6179690 + 0.75 NA Intergenic Intergenic 195997 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 192-50 chr5 80532406 80532775 + 0.75 NA intron (NM_205548, intron 5 of 5) L1MA2|LINE|L1 37690 NM_001004441 340120 Hs.519404 NM_001004441 ENSG00000189127 ANKRD34B DP58 ankyrin repeat domain 34B protein-coding 236-24 chr4 32075931 32076362 + 0.75 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -53724 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 160.75-101 chr7 42492418 42492774 + 0.75 NA Intergenic Intergenic 213851 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 336.5 chr14 61705530 61706387 + 0.75 NA intron (NM_001243084, intron 1 of 14) intron (NM_001243084, intron 1 of 14) 8336 NM_001243084 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 324.25-4 chr4 30670934 30671518 + 0.75 NA Intergenic Intergenic -49143 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 356.5 chr1 51436607 51437420 + 0.75 NA intron (NM_001981, intron 12 of 24) intron (NM_001981, intron 12 of 24) -14918 NM_001159969 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 164.5-39 chr2 210975717 210976188 + 0.75 NA Intergenic Intergenic 358381 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 222.25-43 chr7 28121838 28122324 + 0.75 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -58376 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 191.75 chr1 14748225 14748679 + 0.75 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) 149735 NM_015209 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 189.25-61 chrX 94648403 94648722 + 0.75 NA Intergenic L1M4|LINE|L1 414664 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 164.25-49 chr2 200239287 200239632 + 0.75 NA Intergenic Intergenic -66420 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 214-7 chr10 129268732 129269129 + 0.75 NA Intergenic L1MC4|LINE|L1 -198311 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 197.5-32 chr2 95556718 95557063 + 0.75 NA Intergenic Intergenic -35111 NM_138800 129868 Hs.232026 NM_138800 ENSG00000144015 TRIM43 TRIM43A tripartite motif containing 43 protein-coding 207.75-51 chr8 122020521 122021031 + 0.75 NA Intergenic AluSx|SINE|Alu -379336 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 159.5-13 chr10 68934967 68935358 + 0.75 NA intron (NM_024045, intron 10 of 14) intron (NM_024045, intron 10 of 14) -21008 NM_004728 9188 Hs.223141 NM_004728 ENSG00000165732 DDX21 GUA|GURDB|RH-II/GU|RH-II/GuA DExD-box helicase 21 protein-coding 206.75-44 chr5 43679709 43680168 + 0.75 NA intron (NM_012343, intron 19 of 21) intron (NM_012343, intron 19 of 21) -76708 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 208-14 chr16 53713909 53714220 + 0.75 NA intron (NM_001363897, intron 1 of 7) intron (NM_001363897, intron 1 of 7) 9908 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 153.25 chr1 11927841 11928089 + 0.75 NA Intergenic Intergenic -1538 NM_138346 90231 Hs.520094 NM_138346 ENSG00000116685 KIAA2013 - KIAA2013 protein-coding 155.75-5 chr1 97198433 97198717 + 0.75 NA intron (NM_000110, intron 19 of 22) intron (NM_000110, intron 19 of 22) 102652 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 241-27 chr5 8504108 8504597 + 0.75 NA Intergenic Intergenic 43427 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 251.25-5 chr10 64862210 64862807 + 0.75 NA Intergenic MER5A|DNA|hAT-Charlie 36980 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 176.5-81 chr7 116943490 116943882 + 0.75 NA Intergenic Intergenic -9815 NR_161420 7982 Hs.368131 NM_018412 ENSG00000004866 ST7 ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7 suppression of tumorigenicity 7 protein-coding 159.75-52 chr20 2786039 2786267 + 0.75 NA Intergenic L1M4|LINE|L1 14474 NM_001184699 56265 Hs.659346 NM_019609 ENSG00000088882 CPXM1 CPX1|CPXM carboxypeptidase X, M14 family member 1 protein-coding 228.25-35 chr8 127472451 127472801 + 0.75 NA intron (NR_024393, intron 4 of 4) intron (NR_024393, intron 4 of 4) 9513 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 250.75-23 chr4 111264225 111264756 + 0.75 NA Intergenic Intergenic -403843 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 255.25-26 chr8 139133002 139133587 + 0.75 NA Intergenic Intergenic -219253 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 194-18 chr12 95031395 95031831 + 0.75 NA intron (NM_001127362, intron 10 of 11) intron (NM_001127362, intron 10 of 11) -27900 NM_001258338 55967 Hs.506374 NM_018838 ENSG00000184752 NDUFA12 B17.2|DAP13|MC1DN23 NADH:ubiquinone oxidoreductase subunit A12 protein-coding 231.25-11 chr12 25659826 25660368 + 0.75 NA Intergenic Intergenic -11519 NM_001352232 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 222.25-33 chr5 18724989 18725509 + 0.75 NA Intergenic Intergenic 917975 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 264.75-12 chr5 39517871 39518405 + 0.75 NA Intergenic Intergenic -2293 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 391 chr10 64827268 64828158 + 0.75 NA TTS (NR_001446) TTS (NR_001446) 2185 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 228.25-19 chr22 22962640 22963024 + 0.75 NA Intergenic L1MEc|LINE|L1 75016 NM_001256296 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 197-39 chr6 94250429 94250842 + 0.75 NA Intergenic Intergenic 532332 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 147-49 chr2 75862280 75862556 + 0.75 NA Intergenic Intergenic -151503 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 209.75-26 chr3 16672681 16673146 + 0.75 NA Intergenic MER4-int|LTR|ERV1 -67490 NM_001351 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 192.75-12 chr11 13498402 13498898 + 0.75 NA Intergenic L1PA13|LINE|L1 -2475 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 173.75-75 chr9 118278872 118279346 + 0.75 NA Intergenic Intergenic -400562 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 191.75-2 chr1 158400982 158401304 + 0.75 NA Intergenic L2c|LINE|L2 -1677 NM_001004475 128360 Hs.553588 NM_001004475 ENSG00000186306 OR10T2 OR1-3 olfactory receptor family 10 subfamily T member 2 protein-coding 297.25-14 chrX 87719979 87720422 + 0.75 NA Intergenic Intergenic 202398 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 180.5-39 chr2 82194454 82194805 + 0.75 NA Intergenic L1MB2|LINE|L1 -662174 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 257.25-19 chr4 33113915 33114391 + 0.75 NA Intergenic (TAA)n|Simple_repeat|Simple_repeat 763115 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 180.75-15 chr12 37958950 37959486 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -357556 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 195.75-12 chr11 27773570 27773932 + 0.75 NA Intergenic Intergenic -51721 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 188.25-13 chr14 48467231 48467518 + 0.75 NA Intergenic Intergenic -672360 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 168.75-11 chr10 55060949 55061197 + 0.75 NA intron (NM_001354404, intron 3 of 34) L1MC1|LINE|L1 -259782 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 286.5-17 chr7 91542415 91543017 + 0.75 NA Intergenic L2c|LINE|L2 278283 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 147-101 chr6 122192921 122193322 + 0.75 NA Intergenic AluSc|SINE|Alu -206430 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 273.75-6 chr18 73652189 73652745 + 0.75 NA Intergenic L2b|LINE|L2 327526 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 291.5-12 chr6 50304606 50305173 + 0.75 NA Intergenic Intergenic -254960 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 167.25-33 chr19 57751515 57751798 + 0.75 NA intron (NR_145328, intron 2 of 2) AluJr|SINE|Alu 4841 NR_145327 284309 Hs.720254 NM_173632 ENSG00000152443 ZNF776 - zinc finger protein 776 protein-coding 315.5-4 chr14 56867036 56867616 + 0.75 NA intron (NR_146411, intron 2 of 2) AluJb|SINE|Alu 54168 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 167.25-49 chr3 148528871 148529318 + 0.75 NA Intergenic L2c|LINE|L2 -168777 NM_000685 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 150.75-33 chr18 61279411 61279775 + 0.75 NA Intergenic MIRb|SINE|MIR -53837 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 213-2 chr1 198765880 198766236 + 0.75 NA Intergenic Intergenic 92924 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 225-20 chr6 74391004 74391413 + 0.75 NA intron (NR_110856, intron 2 of 3) MLT1D|LTR|ERVL-MaLR 321757 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 146.75-28 chr14 32763407 32763667 + 0.75 NA intron (NM_004274, intron 11 of 13) intron (NM_004274, intron 11 of 13) -175342 NM_173159 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 251-8 chr3 133343019 133343608 + 0.75 NA intron (NM_001282865, intron 2 of 3) L1MD3|LINE|L1 -56743 NM_003571 8419 Hs.659862 NM_003571 ENSG00000170819 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2 protein-coding 174-6 chr1 192396717 192396973 + 0.75 NA Intergenic A-rich|Low_complexity|Low_complexity 79853 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 250.25-2 chr1 65268584 65269059 + 0.75 NA intron (NM_014787, intron 1 of 18) intron (NM_014787, intron 1 of 18) 4072 NM_014787 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 277-6 chr3 164247288 164247991 + 0.75 NA Intergenic Intergenic -76083 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 199.75-46 chr6 42328428 42328707 + 0.75 NA intron (NM_001297573, intron 3 of 17) L1PREC2|LINE|L1 -110706 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 184.5-7 chr1 98418117 98418514 + 0.75 NA Intergenic L1M5|LINE|L1 207604 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 154.5-89 chr7 46258214 46258490 + 0.75 NA Intergenic Intergenic -337080 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 252.5-28 chr8 80180757 80181175 + 0.75 NA Intergenic Intergenic -9402 NM_001025253 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 168.5-93 chr8 15857500 15857790 + 0.75 NA Intergenic Intergenic 317382 NM_001356429 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 155.5-93 chr6 98185130 98185508 + 0.75 NA Intergenic L1PA13|LINE|L1 160788 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 247.5-37 chr8 129503297 129503730 + 0.75 NA intron (NR_130917, intron 1 of 3) AluSg|SINE|Alu -19371 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 206.75-37 chr4 71984293 71984634 + 0.75 NA Intergenic L1PA8|LINE|L1 -47341 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 262.5-17 chr6 121298428 121298962 + 0.75 NA intron (NR_104452, intron 10 of 35) intron (NR_104452, intron 10 of 35) 35785 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 252-10 chr6 17958629 17959064 + 0.75 NA intron (NM_001243423, intron 2 of 2) intron (NM_001243423, intron 2 of 2) 28789 NM_001105567 63971 Hs.94499 NM_022113 ENSG00000137177 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 156.5-119 chrX 124383393 124383642 + 0.75 NA intron (NM_014253, intron 29 of 30) intron (NM_014253, intron 29 of 30) 37235 NM_001114937 4068 Hs.349094 NM_002351 ENSG00000183918 SH2D1A DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1 SH2 domain containing 1A protein-coding 152.75-71 chr5 5706781 5707157 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR 284292 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 252.75-13 chr2 27725966 27726507 + 0.75 NA intron (NR_160725, intron 2 of 2) intron (NR_160725, intron 2 of 2) 10113 NR_160725 105374378 NR_160725 LOC105374378 - uncharacterized LOC105374378 ncRNA 210.25-10 chr12 23538197 23538755 + 0.75 NA intron (NM_152989, intron 16 of 17) intron (NM_152989, intron 16 of 17) 46110 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 156.75-26 chr12 41067671 41068067 + 0.75 NA intron (NM_001843, intron 23 of 23) intron (NM_001843, intron 23 of 23) -120451 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 242.5-29 chr4 96183460 96183936 + 0.75 NA Intergenic Intergenic -127005 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 155.25-96 chrX 67183264 67183549 + 0.75 NA Intergenic HSMAR2|DNA|TcMar-Mariner -360615 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 195.75-2 chr1 193759339 193759739 + 0.75 NA Intergenic L1ME2|LINE|L1 454794 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 155.5-9 chr10 51438492 51438842 + 0.75 NA intron (NM_001098512, intron 2 of 17) L1MC3|LINE|L1 139094 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 189.75-63 chr5 149127141 149127439 + 0.75 NA Intergenic Intergenic -14157 NM_014945 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 288-2 chr12 24089144 24089602 + 0.75 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -123048 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 185-67 chr7 94531890 94532413 + 0.75 NA intron (NM_001363427, intron 6 of 17) MER44B|DNA|TcMar-Tigger 22342 NM_001363426 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 164.25-45 chr2 117042019 117042375 + 0.75 NA Intergenic (TATACTA)n|Simple_repeat|Simple_repeat -772494 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 222.5-38 chr4 44724466 44724847 + 0.75 NA intron (NM_001270880, intron 1 of 5) intron (NM_001270880, intron 1 of 5) 1900 NM_138335 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 282.25-2 chr11 14734377 14734888 + 0.75 NA intron (NM_000922, intron 1 of 15) L1MC5a|LINE|L1 90828 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 156-85 chr7 16881013 16881369 + 0.75 NA intron (NM_176813, intron 1 of 7) intron (NM_176813, intron 1 of 7) 792 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 189.25-44 chr6 45361179 45361660 + 0.75 NA intron (NM_001015051, intron 2 of 7) intron (NM_001015051, intron 2 of 7) 16099 NR_146635 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 149.5-67 chr4 53499586 53499955 + 0.75 NA promoter-TSS (NR_046622) promoter-TSS (NR_046622) -307 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 239.5-23 chr21 21835413 21835885 + 0.75 NA Intergenic L1MEc|LINE|L1 88664 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 198.25-11 chr12 90078539 90078951 + 0.75 NA Intergenic Intergenic 131052 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 168.5-103 chr9 73032814 73033071 + 0.75 NA Intergenic Intergenic -79889 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 252.25-15 chr7 19774472 19775106 + 0.75 NA Intergenic Intergenic -1172 NM_001366626 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 190-51 chr5 56306714 56307182 + 0.75 NA Intergenic MER58A|DNA|hAT-Charlie -73618 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 157.75-73 chr4 31554216 31554572 + 0.75 NA intron (NR_149121, intron 1 of 2) L1ME2|LINE|L1 47850 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 200.5-20 chr14 80763410 80763861 + 0.75 NA intron (NM_152446, intron 16 of 24) L2c|LINE|L2 178103 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 157-64 chr3 120189714 120190068 + 0.75 NA intron (NM_001168271, intron 4 of 8) L1ME1|LINE|L1 54404 NM_153002 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 230.75-13 chr15 80114749 80115116 + 0.75 NA intron (NM_001242916, intron 2 of 6) intron (NM_001242916, intron 2 of 6) 16516 NM_001242919 54469 Hs.596679 NM_019006 ENSG00000086666 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger AN1-type containing 6 protein-coding 184.25-16 chr13 42771506 42771946 + 0.75 NA Intergenic L1PA7|LINE|L1 -9824 NM_182508 144809 Hs.16970 NM_182508 ENSG00000179813 FAM216B C13orf30 family with sequence similarity 216 member B protein-coding 170.25-28 chr2 72056915 72057419 + 0.75 NA Intergenic L1PREC2|LINE|L1 90695 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 150.5-10 chr1 113945437 113945697 + 0.75 NA intron (NM_198268, intron 2 of 15) L1MB4|LINE|L1 -5578 NM_198269 204851 Hs.532363 NM_152696 ENSG00000163349 HIPK1 Myak|Nbak2 homeodomain interacting protein kinase 1 protein-coding 158.75-10 chr11 35725981 35726221 + 0.75 NA exon (NM_017583, exon 3 of 5) exon (NM_017583, exon 3 of 5) 63326 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 152.75-63 chr3 179113385 179113633 + 0.75 NA intron (NR_125401, intron 2 of 2) HAL1|LINE|L1 34464 NR_125401 101928739 Hs.434553 NR_125401 ENSG00000229102 LOC101928739 - uncharacterized LOC101928739 ncRNA 190.5-18 chr16 76779492 76779898 + 0.75 NA Intergenic Intergenic -89241 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 180.75-9 chr11 21856318 21856591 + 0.75 NA Intergenic L1MC4|LINE|L1 -336631 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 225.75-20 chr4 30823261 30823672 + 0.75 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 103097 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 214-37 chr9 90524290 90524753 + 0.75 NA intron (NR_034157, intron 1 of 5) intron (NR_034157, intron 1 of 5) 58225 NR_034157 340515 Hs.522284 NM_001105317 LINC01501 - long intergenic non-protein coding RNA 1501 ncRNA 197.5-15 chr12 85349148 85349587 + 0.75 NA Intergenic Intergenic 69147 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 219.25-46 chr8 87203326 87203857 + 0.75 NA intron (NM_173538, intron 4 of 10) MLT1J1-int|LTR|ERVL-MaLR 337176 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 182-47 chr5 102911863 102912202 + 0.75 NA intron (NR_157231, intron 5 of 14) L2|LINE|L2 46209 NM_000919 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 147.75-112 chr8 88383038 88383312 + 0.75 NA Intergenic AluSq2|SINE|Alu -55692 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 175.75-60 chr6 56981472 56981846 + 0.75 NA intron (NM_001318539, intron 1 of 3) intron (NM_001318539, intron 1 of 3) 26552 NM_152731 221336 Hs.582993 NM_152731 ENSG00000151917 BEND6 C6orf65 BEN domain containing 6 protein-coding 245.75-18 chr8 86011945 86012302 + 0.75 NA Intergenic Intergenic 57545 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 162.75-51 chr3 167658133 167658570 + 0.75 NA promoter-TSS (NM_001348951) promoter-TSS (NM_001348951) -428 NM_001348951 151790 Hs.213762 NM_178824 ENSG00000174776 WDR49 - WD repeat domain 49 protein-coding 177.5-40 chr4 47428327 47428688 + 0.75 NA Intergenic Intergenic 35195 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 202.75-48 chr8 129370760 129371258 + 0.75 NA intron (NR_130918, intron 1 of 2) intron (NR_130918, intron 1 of 2) 113133 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 233.5-8 chr2 6158096 6158586 + 0.75 NA Intergenic MER4A1|LTR|ERV1 176363 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 221.25-27 chr4 137816862 137817341 + 0.75 NA Intergenic MLT1B|LTR|ERVL-MaLR 271370 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 256-9 chr4 180315953 180316513 + 0.75 NA Intergenic Intergenic 842916 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 174-58 chr6 68941054 68941445 + 0.75 NA intron (NM_001704, intron 5 of 31) intron (NM_001704, intron 5 of 31) 305967 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 151.25-70 chr4 94519434 94519733 + 0.75 NA intron (NM_001256428, intron 2 of 11) MIR|SINE|MIR 67641 NM_001256427 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 239.75-8 chr10 117118276 117118888 + 0.75 NA intron (NM_001258300, intron 1 of 17) L1MA4|LINE|L1 8004 NM_001258300 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 217-22 chr4 59826765 59827211 + 0.75 NA Intergenic Intergenic 813415 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 149.5-92 chr8 69430078 69430404 + 0.75 NA intron (NR_110433, intron 2 of 3) intron (NR_110433, intron 2 of 3) 18003 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 148.5-6 chr1 152465831 152466276 + 0.75 NA Intergenic L1MEg|LINE|L1 -44750 NM_178438 254910 Hs.516410 NM_178438 ENSG00000186207 LCE5A LEP18|SPRL5A late cornified envelope 5A protein-coding 205.75 chr1 65161601 65161929 + 0.75 NA intron (NM_001330616, intron 1 of 4) intron (NM_001330616, intron 1 of 4) 12771 NM_001330616 205 Hs.10862 NM_013410 ENSG00000162433 AK4 AK 4|AK3|AK3L1|AK3L2 adenylate kinase 4 protein-coding 189-23 chr15 72266857 72267267 + 0.75 NA intron (NR_136599, intron 3 of 22) intron (NR_136599, intron 3 of 22) 5492 NR_136594 56965 Hs.270244 NM_020213 ENSG00000137817 PARP6 ARTD17|PARP-6-B1|PARP-6-C|pART17 poly(ADP-ribose) polymerase family member 6 protein-coding 189.25-2 chr1 158841932 158842236 + 0.75 NA intron (NM_002432, intron 1 of 6) intron (NM_002432, intron 1 of 6) 10733 NM_002432 4332 Hs.153837 NM_002432 ENSG00000163563 MNDA PYHIN3 myeloid cell nuclear differentiation antigen protein-coding 256.5-19 chr8 36107249 36107758 + 0.75 NA Intergenic L1MEc|LINE|L1 -397183 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 201.5-65 chr8 104581219 104581571 + 0.75 NA intron (NM_013437, intron 1 of 6) L1PA13|LINE|L1 7629 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 239.5-25 chr4 30957401 30957965 + 0.75 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -213461 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 229-17 chr3 112632727 112633216 + 0.75 NA intron (NM_199512, intron 2 of 7) MIRc|SINE|MIR 8172 NM_199511 151887 Hs.477128 NM_199511 ENSG00000091986 CCDC80 CL2|DRO1|SSG1|URB|okuribin coiled-coil domain containing 80 protein-coding 204-10 chr13 65338903 65339271 + 0.75 NA Intergenic Intergenic -526960 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 202-7 chr12 63322206 63322548 + 0.75 NA Intergenic MER3|DNA|hAT-Charlie -169567 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 218.5-14 chr15 92509099 92509643 + 0.75 NA Intergenic L1M5|LINE|L1 37694 NR_161370 145858 Hs.367879 NM_153040 C15orf32 - chromosome 15 open reading frame 32 ncRNA 168.75-67 chr3 53275526 53275955 + 0.75 NA Intergenic Intergenic -19626 NR_047580 7086 Hs.89643 NM_001064 ENSG00000163931 TKT HEL-S-48|HEL107|SDDHD|TK|TKT1 transketolase protein-coding 208.5-22 chr15 95624370 95624729 + 0.75 NA Intergenic Intergenic 191456 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 151.5-94 chr8 15474474 15474805 + 0.75 NA Intergenic Intergenic -65448 NM_178234 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 233.5-25 chr5 94701828 94702225 + 0.75 NA Intergenic Intergenic 83357 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 146-23 chr14 66963528 66963793 + 0.75 NA intron (NM_020806, intron 8 of 22) intron (NM_020806, intron 8 of 22) -225780 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 193-23 chr17 67538857 67539386 + 0.75 NA intron (NM_181671, intron 2 of 9) L1ME3Cz|LINE|L1 -67536 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 216-3 chr1 78757437 78757863 + 0.75 NA Intergenic Intergenic 107819 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 176.25-62 chr8 77335986 77336364 + 0.75 NA Intergenic Intergenic -114522 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 149.75-28 chr16 58630007 58630273 + 0.75 NA promoter-TSS (NM_001265612) promoter-TSS (NM_001265612) -314 NR_049763 23019 Hs.460923 NM_016284 ENSG00000125107 CNOT1 AD-005|CDC39|NOT1|NOT1H CCR4-NOT transcription complex subunit 1 protein-coding 263-6 chr16 60323138 60323716 + 0.75 NA Intergenic AluSq2|SINE|Alu 36366 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 238-6 chr11 69364669 69365054 + 0.75 NA Intergenic L1MEd|LINE|L1 -60794 NM_001319657 102724265 Hs.448669 NM_001319657 LOC102724265 - uncharacterized LOC102724265 protein-coding 301.75-11 chr5 93471407 93471953 + 0.75 NA intron (NR_021491, intron 4 of 5) intron (NR_021491, intron 4 of 5) 99663 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 205-14 chr14 43235015 43235645 + 0.75 NA Intergenic Intergenic 1271953 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 156.75-43 chr17 67101165 67101483 + 0.75 NA intron (NM_001330447, intron 31 of 32) intron (NM_001330447, intron 31 of 32) 56770 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 147.5-38 chr2 40560340 40560607 + 0.75 NA Intergenic Intergenic -48038 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 202.5-31 chr2 147992596 147992916 + 0.75 NA intron (NM_001190879, intron 1 of 14) MER39B|LTR|ERV1 27981 NM_181741 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 283.25-6 chr5 42266643 42267387 + 0.75 NA Intergenic HAL1b|LINE|L1 -91670 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 249-12 chr5 83948421 83949104 + 0.75 NA intron (NM_001278642, intron 9 of 9) intron (NM_001278642, intron 9 of 9) -227907 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 205.75-6 chr1 103998641 103999007 + 0.75 NA Intergenic Intergenic -74199 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 171.25-46 chr4 178794578 178795121 + 0.75 NA Intergenic LTR52|LTR|ERVL -886913 NR_108093 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 324.25-10 chr5 161862544 161863055 + 0.75 NA intron (NM_000806, intron 4 of 10) MIRc|SINE|MIR 12074 NM_001127648 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 189-18 chr12 90650683 90651012 + 0.75 NA Intergenic L1ME1|LINE|L1 -267176 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 248.5-21 chr5 121011217 121011752 + 0.75 NA Intergenic Intergenic -311066 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 259.5-2 chr10 114444002 114444672 + 0.75 NA intron (NM_001352440, intron 15 of 20) intron (NM_001352440, intron 15 of 20) -39559 NM_001351071 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 207.75-20 chr2 77818999 77819364 + 0.75 NA intron (NR_110288, intron 3 of 3) intron (NR_110288, intron 3 of 3) -96753 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 151.25-53 chr20 57078675 57078929 + 0.75 NA Intergenic L1M3|LINE|L1 -134894 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 217-7 chr14 58550466 58550878 + 0.75 NA 3' UTR (NM_001364701, exon 31 of 31) 3' UTR (NM_001364701, exon 31 of 31) -83396 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 240.5-2 chr1 174670367 174670687 + 0.75 NA intron (NM_001366446, intron 14 of 25) L1MA1|LINE|L1 -30012 NM_001366451 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 179.25-69 chr7 70296290 70296731 + 0.75 NA intron (NM_015570, intron 4 of 18) L1ME4a|LINE|L1 698035 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 199-36 chr7 113581562 113581883 + 0.75 NA Intergenic Intergenic 337287 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 272.25-17 chr6 119761126 119761773 + 0.75 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) 211641 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 180-54 chr5 78348577 78348991 + 0.75 NA Intergenic Intergenic 11757 NR_105014 728769 Hs.586193 NR_105014 ENSG00000245556 SCAMP1-AS1 - SCAMP1 antisense RNA 1 ncRNA 180.25-51 chr4 61335147 61335577 + 0.75 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 133190 NM_001371342 223.25-18 chr3 50717621 50718053 + 0.75 NA intron (NM_004947, intron 1 of 52) AluSz|SINE|Alu 42757 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 261.25-2 chr1 225640442 225641059 + 0.75 NA intron (NM_001008493, intron 1 of 14) MIR|SINE|MIR 12373 NM_001008493 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 ENAH actin regulator protein-coding 163.5-13 chr10 49807167 49807533 + 0.75 NA Intergenic L1MC2|LINE|L1 -44971 NM_001347820 55753 Hs.17860 NM_018245 ENSG00000197444 OGDHL - oxoglutarate dehydrogenase like protein-coding 189.75-51 chr3 109862519 109862979 + 0.75 NA Intergenic MLT1F-int|LTR|ERVL-MaLR 259921 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 367 chr1 95246405 95247249 + 0.75 NA exon (NM_001278248, exon 5 of 5) exon (NM_001278248, exon 5 of 5) 12617 NM_015485 25950 Hs.483512 NM_015485 ENSG00000122481 RWDD3 RSUME RWD domain containing 3 protein-coding 178.75-71 chr8 128336784 128337201 + 0.75 NA Intergenic L1MB3|LINE|L1 186876 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 236.5-8 chr12 126871848 126872349 + 0.75 NA intron (NR_033970, intron 2 of 2) AluSx1|SINE|Alu 2592 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 151.25-47 chr2 161180078 161180524 + 0.75 NA intron (NM_001199135, intron 2 of 7) intron (NM_001199135, intron 2 of 7) 19873 NM_001199135 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 257.75-7 chr13 42378473 42379028 + 0.75 NA Intergenic LFSINE_Vert|SINE|tRNA -46142 NR_135319 105370177 NR_135319 ENSG00000283554 LINC02341 - long intergenic non-protein coding RNA 2341 ncRNA 219.25-42 chr7 9376211 9376774 + 0.75 NA Intergenic Intergenic -257778 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 240.75-3 chr10 53524151 53524567 + 0.75 NA Intergenic Intergenic -752659 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 207-26 chr3 128710807 128711200 + 0.75 NA Intergenic MLT1J2|LTR|ERVL-MaLR -15133 NM_004637 7879 Hs.684374 NM_004637 ENSG00000075785 RAB7A PRO2706|RAB7 RAB7A, member RAS oncogene family protein-coding 254.5-20 chr20 14564644 14565218 + 0.75 NA intron (NR_104193, intron 1 of 4) L1PB4|LINE|L1 10547 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 587.25 chr11 42148940 42150256 + 0.75 NA Intergenic Intergenic -64140 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 208.5-7 chr11 6226769 6227266 + 0.75 NA intron (NM_032127, intron 1 of 11) intron (NM_032127, intron 1 of 11) 7619 NM_032127 84067 Hs.501793 NM_032127 ENSG00000051009 FAM160A2 C11orf56|FHIP family with sequence similarity 160 member A2 protein-coding 224-13 chr17 69734767 69735294 + 0.75 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) 141043 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 207.5-17 chr15 62817031 62817361 + 0.75 NA intron (NM_015059, intron 49 of 55) intron (NM_015059, intron 49 of 55) -6761 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 216-22 chr2 212139188 212139622 + 0.75 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 286955 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 200.5-12 chr11 61156653 61157176 + 0.75 NA intron (NM_017966, intron 1 of 4) L1MB3|LINE|L1 4512 NM_017966 55048 Hs.523715 NM_017966 ENSG00000167987 VPS37C - VPS37C subunit of ESCRT-I protein-coding 343.75-3 chr12 34651460 34652428 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 629448 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 178.75-3 chr1 66275923 66276383 + 0.75 NA intron (NM_001037340, intron 5 of 14) intron (NM_001037340, intron 5 of 14) -55955 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 230.75-6 chr10 55448379 55448839 + 0.75 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -150433 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 276.75-11 chr5 124811118 124811577 + 0.75 NA Intergenic L3|LINE|CR1 -66235 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 253.5 chr1 98189027 98189482 + 0.75 NA Intergenic Intergenic -21457 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 304.25-6 chr2 177669480 177670107 + 0.75 NA intron (NM_001077197, intron 18 of 20) intron (NM_001077197, intron 18 of 20) -3529 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 148.5-9 chr1 195724435 195724796 + 0.75 NA Intergenic L1MCc|LINE|L1 364100 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 169.75-42 chr2 202552622 202553100 + 0.75 NA exon (NM_001204, exon 11 of 13) exon (NM_001204, exon 11 of 13) -82108 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 211-4 chr1 146029470 146029893 + 0.75 NA Intergenic AluSz|SINE|Alu -7859 NM_213653 148738 Hs.632436 NM_145277 ENSG00000168509 HJV HFE2|HFE2A|JH|RGMC hemojuvelin BMP co-receptor protein-coding 164.25-39 chr18 67307251 67307739 + 0.75 NA Intergenic L1M4|LINE|L1 -209051 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 211.25-30 chr3 175566381 175566972 + 0.75 NA intron (NM_207015, intron 9 of 13) intron (NM_207015, intron 9 of 13) 197136 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 150-66 chr4 30512158 30512535 + 0.75 NA Intergenic Intergenic -208023 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 242-3 chr10 28288312 28288939 + 0.75 NA TTS (NR_107053) TTS (NR_107053) 725 NR_107053 102465880 NR_107053 ENSG00000275036 MIR8086 hsa-mir-8086 microRNA 8086 ncRNA 216.5-2 chr1 113678599 113679104 + 0.75 NA intron (NM_001142782, intron 19 of 20) intron (NM_001142782, intron 19 of 20) 80304 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 236.75-21 chr4 79509839 79510387 + 0.75 NA intron (NR_038826, intron 2 of 3) MLT1H|LTR|ERVL-MaLR 17520 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 162-53 chr4 35515626 35515891 + 0.75 NA Intergenic Intergenic 728181 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 281-8 chr4 173588860 173589488 + 0.75 NA intron (NR_136196, intron 4 of 4) L1ME3D|LINE|L1 58716 NR_003679 79804 Hs.61435 NR_003679 ENSG00000237125 HAND2-AS1 DEIN|NBLA00301|UPH HAND2 antisense RNA 1 ncRNA 180.75-70 chr8 88251032 88251403 + 0.75 NA intron (NM_005941, intron 1 of 9) L1PA2|LINE|L1 76266 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 171.25-12 chr12 8896905 8897306 + 0.75 NA Intergenic AluSq10|SINE|Alu -17404 NM_004426 1911 Hs.744902 NM_004426 ENSG00000111752 PHC1 EDR1|HPH1|MCPH11|RAE28 polyhomeotic homolog 1 protein-coding 218.25-34 chr5 55327908 55328418 + 0.75 NA intron (NM_015360, intron 4 of 26) intron (NM_015360, intron 4 of 26) 20174 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 265.25-8 chr15 94636518 94637163 + 0.75 NA Intergenic AluSx1|SINE|Alu -218523 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 181-38 chr6 26180213 26180672 + 0.75 NA Intergenic AluSx|SINE|Alu -3354 NM_003523 8344 Hs.534369 NM_003523 ENSG00000274290 HIST1H2BE H2B.h|H2B/h|H2BFH|dJ221C16.8 histone cluster 1 H2B family member e protein-coding 168-64 chr7 141517341 141517615 + 0.75 NA Intergenic Intergenic -33932 NM_001364948 55750 Hs.685880 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 226-11 chr16 58880807 58881197 + 0.75 NA Intergenic Intergenic -146686 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 191.75-56 chr6 122835799 122836240 + 0.75 NA Intergenic L2c|LINE|L2 46761 NM_006714 10924 Hs.486357 NM_006714 ENSG00000172594 SMPDL3A ASM3A|ASML3a|yR36GH4.1 sphingomyelin phosphodiesterase acid like 3A protein-coding 200.75-30 chr2 200855655 200856209 + 0.75 NA intron (NR_027856, intron 7 of 10) AluSx1|SINE|Alu 8629 NM_001162407 1195 Hs.433732 NM_004071 ENSG00000013441 CLK1 CLK|CLK/STY|STY CDC like kinase 1 protein-coding 185.5-55 chr5 15705658 15706149 + 0.75 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -90901 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 217.25-40 chr6 136559403 136559906 + 0.75 NA intron (NM_005923, intron 28 of 29) intron (NM_005923, intron 28 of 29) -8835 NM_001198616 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 270.75-24 chr6 144791583 144792132 + 0.75 NA intron (NM_007124, intron 61 of 73) intron (NM_007124, intron 61 of 73) 386202 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 153-82 chr6 144110524 144110740 + 0.75 NA Intergenic Intergenic -15059 NM_031287 83443 Hs.110695 NM_031287 ENSG00000169976 SF3B5 SF3b10|Ysf3 splicing factor 3b subunit 5 protein-coding 176.75-66 chr4 104050151 104050633 + 0.75 NA Intergenic Intergenic -330407 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 157.5-85 chr5 173341061 173341448 + 0.75 NA Intergenic Intergenic -6201 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 222-9 chr18 7228432 7228910 + 0.75 NA Intergenic MIR|SINE|MIR -2433 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 149.75-55 chr3 76300499 76300898 + 0.75 NA Intergenic Intergenic -515149 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 190.5-3 chr1 188014713 188015124 + 0.75 NA Intergenic L1MC3|LINE|L1 571290 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 204.25-17 chr17 61813051 61813448 + 0.75 NA intron (NM_032043, intron 6 of 19) intron (NM_032043, intron 6 of 19) 50310 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 180-4 chr1 105229301 105229735 + 0.75 NA Intergenic Intergenic 389417 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 289.25-23 chr8 138175455 138176213 + 0.75 NA intron (NM_015912, intron 11 of 19) intron (NM_015912, intron 11 of 19) -92289 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 293.75-5 chr2 192422267 192422936 + 0.75 NA Intergenic Intergenic -227668 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 168.75-63 chr22 47743784 47744106 + 0.75 NA intron (NR_122046, intron 8 of 8) intron (NR_122046, intron 8 of 8) 112271 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 218.25-35 chr5 67812386 67812762 + 0.75 NA Intergenic Intergenic 19361 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 219.5-24 chr5 170313629 170314068 + 0.75 NA Intergenic L1ME4a|LINE|L1 -1132 NR_147701 100128059 Hs.587351 NR_147701 ENSG00000250274 LOC100128059 - uncharacterized LOC100128059 ncRNA 190.25-64 chr8 138358060 138358496 + 0.75 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 138983 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 272.5-15 chr7 13469313 13469784 + 0.75 NA Intergenic L1M5|LINE|L1 516966 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 152.5-31 chr14 77739099 77739401 + 0.75 NA intron (NM_001318844, intron 3 of 12) intron (NM_001318844, intron 3 of 12) -21518 NR_161323 283579 Hs.375834 NM_174943 ENSG00000197734 C14orf178 - chromosome 14 open reading frame 178 ncRNA 170-24 chr17 72663152 72663575 + 0.75 NA intron (NM_001352692, intron 7 of 9) L1ME3A|LINE|L1 -22891 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 166-25 chr14 85785951 85786354 + 0.75 NA Intergenic Tigger17a|DNA|TcMar-Tigger -148526 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 162-63 chr5 65798482 65798811 + 0.75 NA intron (NM_020726, intron 9 of 12) intron (NM_020726, intron 9 of 12) 76441 NM_020726 57486 Hs.247460 NM_020726 ENSG00000123213 NLN AGTBP|EP24.16|MEP|MOP neurolysin protein-coding 243-22 chr8 85537478 85538022 + 0.75 NA Intergenic Intergenic -72835 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 182.75-54 chr5 30913559 30913843 + 0.75 NA Intergenic MIRb|SINE|MIR -279985 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 176.5-48 chr21 22822387 22822775 + 0.75 NA Intergenic L1MA9|LINE|L1 -256703 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 195.5-53 chr5 22393755 22394166 + 0.75 NA intron (NM_001364104, intron 2 of 13) MLT1D-int|LTR|ERVL-MaLR -180110 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 174.5-48 chr22 24376344 24376791 + 0.75 NA intron (NM_001254732, intron 13 of 14) L1MB5|LINE|L1 34459 NM_001254733 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1|TBHS sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 159.75-36 chr14 89005433 89005708 + 0.75 NA Intergenic L2a|LINE|L2 180919 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 210.75-17 chr14 46858895 46859388 + 0.75 NA intron (NM_001113498, intron 14 of 16) intron (NM_001113498, intron 14 of 16) -207360 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 182.75-25 chr14 72746833 72747172 + 0.75 NA intron (NM_001280544, intron 3 of 9) intron (NM_001280544, intron 3 of 9) 145647 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 218.75-4 chr10 43837199 43837657 + 0.75 NA Intergenic L1MC|LINE|L1 -7878 NR_033923 414260 Hs.351856 NR_033923 ENSG00000226808 LINC00619 C10orf136|bA168P8.1 long intergenic non-protein coding RNA 619 ncRNA 161.5-62 chr3 36500396 36500741 + 0.75 NA intron (NM_001292049, intron 4 of 8) L1PA10|LINE|L1 120081 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 281-10 chr6 123847313 123847787 + 0.75 NA intron (NM_001040214, intron 1 of 6) MIRc|SINE|MIR 43685 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 276.5-12 chr6 68220354 68220979 + 0.75 NA Intergenic Intergenic 109233 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 351.25-5 chr7 111586716 111587688 + 0.75 NA Intergenic Intergenic -24685 NM_001350963 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 254-5 chr18 72382347 72382758 + 0.75 NA Intergenic Intergenic 161790 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 225.75-34 chr9 92409255 92409708 + 0.75 NA intron (NM_001286969, intron 4 of 6) intron (NM_001286969, intron 4 of 6) -4782 NM_033014 4969 Hs.109439 NM_014057 ENSG00000106809 OGN OG|OIF|SLRR3A osteoglycin protein-coding 288.75-3 chr11 6135201 6135958 + 0.75 NA Intergenic MER65-int|LTR|ERV1 27895 NM_001005181 196335 Hs.632154 NM_001005181 ENSG00000180919 OR56B4 OR11-67 olfactory receptor family 56 subfamily B member 4 protein-coding 149-36 chr2 29277539 29277857 + 0.75 NA intron (NM_004304, intron 9 of 28) intron (NM_004304, intron 9 of 28) -53798 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 159.25-52 chr3 102298901 102299211 + 0.75 NA Intergenic Intergenic 135351 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 210.5-34 chr5 45715832 45716322 + 0.75 NA Intergenic Intergenic -19697 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 177.75-3 chr1 78302110 78302502 + 0.75 NA intron (NR_027310, intron 3 of 5) intron (NR_027310, intron 3 of 5) 72707 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 168-67 chr8 114775945 114776195 + 0.75 NA Intergenic L1MEc|LINE|L1 891943 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 180.25-57 chr5 57916691 57917065 + 0.75 NA Intergenic Intergenic -17716 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 243.25-11 chr2 126396968 126397485 + 0.75 NA Intergenic L1PB1|LINE|L1 -258709 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 222.25-11 chr14 53358298 53358794 + 0.75 NA Intergenic MIR|SINE|MIR 205192 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 202.25-30 chr2 40714613 40714979 + 0.75 NA Intergenic Intergenic -202361 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 227.25-30 chr8 137051439 137051944 + 0.75 NA Intergenic MER6|DNA|TcMar-Tigger 361897 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 253.75-16 chr2 129025923 129026634 + 0.75 NA Intergenic Intergenic 161678 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 207-44 chr6 64351815 64352140 + 0.75 NA intron (NM_001292009, intron 29 of 43) intron (NM_001292009, intron 29 of 43) 545141 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 290.5-14 chr6 169272356 169273095 + 0.75 NA Intergenic L1MEc|LINE|L1 -18611 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 218-25 chr8 6168942 6169273 + 0.75 NA Intergenic Intergenic 237441 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 182.25-8 chr12 6037349 6037726 + 0.75 NA intron (NM_000552, intron 18 of 51) intron (NM_000552, intron 18 of 51) 2646 NR_145989 109729112 NR_145989 SNORA120 - small nucleolar RNA, H/ACA box 120 snoRNA 190.75-26 chr14 72626194 72626709 + 0.75 NA intron (NM_001280542, intron 9 of 10) L1MC4a|LINE|L1 109631 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 160.75-108 chr9 25242052 25242425 + 0.75 NA Intergenic Intergenic 436620 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 157.25-19 chr14 54638667 54639003 + 0.75 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 71223 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 177.75-60 chr5 55298144 55298436 + 0.75 NA intron (NR_144323, intron 2 of 26) intron (NR_144323, intron 2 of 26) 9404 NM_019030 54505 Hs.593268 NM_019030 ENSG00000067248 DHX29 DDX29 DExH-box helicase 29 protein-coding 299-4 chr18 10037922 10038581 + 0.75 NA Intergenic Intergenic 124235 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 189.5-29 chr2 46236617 46237036 + 0.75 NA Intergenic MIRc|SINE|MIR -60581 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 175.25-34 chr2 74599035 74599310 + 0.75 NA intron (NM_001321739, intron 4 of 10) AluSx|SINE|Alu 45012 NM_001318866 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 246 chr1 219363214 219363625 + 0.75 NA Intergenic MER33|DNA|hAT-Charlie 188450 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 149.75-42 chr2 169437162 169437440 + 0.75 NA Intergenic L1MA2|LINE|L1 -42193 NM_152384 129880 Hs.233398 NM_152384 ENSG00000163093 BBS5 - Bardet-Biedl syndrome 5 protein-coding 227.25-11 chr12 77306236 77306759 + 0.75 NA Intergenic MIRc|SINE|MIR -240928 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 198.25-52 chr7 23402889 23403175 + 0.75 NA intron (NM_006547, intron 3 of 14) MER20B|DNA|hAT-Charlie 6586 NR_145734 109616981 NR_145734 ENSG00000212264 SNORD65C - small nucleolar RNA, C/D box 65C snoRNA 172.25-12 chr11 94086363 94086740 + 0.75 NA intron (NM_001098672, intron 11 of 19) intron (NM_001098672, intron 11 of 19) -42290 NM_015368 24145 Hs.591976 NM_015368 ENSG00000110218 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 185-23 chr15 23710672 23711057 + 0.75 NA Intergenic Intergenic -23559 NM_002487 4692 Hs.50130 NM_002487 ENSG00000182636 NDN HsT16328|PWCR necdin, MAGE family member protein-coding 171-40 chr3 42217522 42217859 + 0.75 NA intron (NM_001349247, intron 14 of 16) intron (NM_001349247, intron 14 of 16) 46257 NM_001174138 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 222.5-7 chr1 242366909 242367266 + 0.75 NA intron (NM_001320272, intron 2 of 10) intron (NM_001320272, intron 2 of 10) 82381 NM_001195812 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 146.25-30 chr15 75695019 75695289 + 0.75 NA intron (NM_001897, intron 1 of 9) intron (NM_001897, intron 1 of 9) 17694 NM_001897 1464 Hs.513044 NM_001897 ENSG00000173546 CSPG4 HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2 chondroitin sulfate proteoglycan 4 protein-coding 198-11 chr15 25907477 25908018 + 0.75 NA intron (NR_040082, intron 1 of 4) (TA)n|Simple_repeat|Simple_repeat 5387 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LINC02346 - long intergenic non-protein coding RNA 2346 ncRNA 263.75-19 chr7 122453303 122453756 + 0.75 NA intron (NM_001167940, intron 14 of 29) intron (NM_001167940, intron 14 of 29) -148779 NM_001024613 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 200.25-41 chr5 66315031 66315560 + 0.75 NA Intergenic L1PA16|LINE|L1 -105849 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 257-13 chr9 14127259 14127797 + 0.75 NA intron (NR_161384, intron 5 of 7) L1MC5|LINE|L1 53274 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 310.25-3 chr14 64395553 64396211 + 0.75 NA intron (NM_005956, intron 1 of 27) intron (NM_005956, intron 1 of 27) 7529 NM_001364837 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 CIMAH|MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 185.5-64 chr6 35968071 35968515 + 0.75 NA intron (NM_001193476, intron 11 of 19) AluSx|SINE|Alu -47113 NR_034069 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 262.75-3 chr1 189061885 189062463 + 0.75 NA Intergenic Intergenic 1413836 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 222-24 chr7 31138974 31139489 + 0.75 NA Intergenic L1MD|LINE|L1 86770 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 162.25-82 chr7 4130329 4130803 + 0.75 NA intron (NR_158215, intron 1 of 1) intron (NR_158215, intron 1 of 1) 881 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 150-31 chr17 53373418 53373738 + 0.75 NA Intergenic Intergenic 388073 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 168.75-70 chr3 110262406 110262657 + 0.75 NA Intergenic Intergenic 659703 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 197.75-63 chr6 130571588 130571993 + 0.75 NA Intergenic L1PA7|LINE|L1 134673 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 170.75 chr1 43711393 43711851 + 0.75 NA intron (NR_125986, intron 3 of 3) Tigger15a|DNA|TcMar-Tigger 4086 NM_001350621 6487 Hs.597915 NM_006279 ENSG00000126091 ST3GAL3 EIEE15|MRT12|SIAT6|ST3GALII|ST3Gal III|ST3GalIII|ST3N ST3 beta-galactoside alpha-2,3-sialyltransferase 3 protein-coding 150.5-47 chr18 7302637 7302906 + 0.75 NA Intergenic L1MB7|LINE|L1 71667 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 264-8 chr5 46433202 46433658 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -737050 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 214.25-20 chr2 176491676 176492173 + 0.75 NA Intergenic Intergenic 109128 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 211.25-41 chr6 94502375 94502879 + 0.75 NA Intergenic Intergenic 784324 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 181-11 chr12 10032814 10033183 + 0.75 NA intron (NM_207345, intron 1 of 8) L2a|LINE|L2 2316 NM_207345 283420 Hs.531189 NM_207345 ENSG00000197992 CLEC9A CD370|DNGR-1|DNGR1|UNQ9341 C-type lectin domain containing 9A protein-coding 264.25-13 chr2 211517586 211518109 + 0.75 NA intron (NM_001042599, intron 20 of 26) intron (NM_001042599, intron 20 of 26) 900276 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 230-26 chr5 35553972 35554494 + 0.75 NA Intergenic MLT1F|LTR|ERVL-MaLR -63630 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 230.75-21 chr2 74645969 74646499 + 0.75 NA intron (NM_001321739, intron 1 of 10) Tigger6a|DNA|TcMar-Tigger 1803 NM_138804 130951 Hs.348645 NM_138804 ENSG00000159374 M1AP C2orf65|D6Mm5e|SPATA37 meiosis 1 associated protein protein-coding 155.5-52 chr2 164689580 164689975 + 0.75 NA intron (NM_001365670, intron 13 of 13) MER96B|DNA|hAT-Tip100 -2000 NR_033309 100337591 Hs.664357 NR_033309 ENSG00000206869 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 222-28 chr8 92442924 92443356 + 0.75 NA Intergenic L2c|LINE|L2 212354 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 222.5-17 chr14 90196567 90197114 + 0.75 NA Intergenic Intergenic -59713 NM_002802 5700 Hs.356654 NM_002802 ENSG00000100764 PSMC1 P26S4|S4|p56 proteasome 26S subunit, ATPase 1 protein-coding 209.75-16 chr15 56336597 56337093 + 0.75 NA Intergenic LTR16|LTR|ERVL -28579 NM_001286449 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 210.75-24 chr16 31012000 31012558 + 0.75 NA Intergenic Intergenic -1641 NM_052874 112755 Hs.542230 NM_052874 ENSG00000099365 STX1B GEFSP9|STX1B1|STX1B2 syntaxin 1B protein-coding 285.75-7 chr6 57109808 57110318 + 0.75 NA TTS (NM_001257273) TTS (NM_001257273) 19875 NM_001257273 26036 Hs.485628 NM_015555 ENSG00000112200 ZNF451 COASTER|dJ417I1.1 zinc finger protein 451 protein-coding 266-9 chr3 112263938 112264376 + 0.75 NA intron (NM_001320531, intron 8 of 27).2 intron (NM_001320531, intron 8 of 27).2 30059 NM_183061 285335 Hs.680112 NM_183061 ENSG00000172139 SLC9C1 NHE|NHE-10|SLC9A10|sperm-NHE solute carrier family 9 member C1 protein-coding 163.25-16 chr11 56622787 56623181 + 0.75 NA Intergenic Intergenic -9482 NM_001004740 390168 Hs.553751 NM_001004740 ENSG00000255012 OR5M1 OR11-208|OST050 olfactory receptor family 5 subfamily M member 1 protein-coding 189.25-52 chr7 105860097 105860491 + 0.75 NA intron (NM_152749, intron 2 of 3) intron (NM_152749, intron 2 of 3) 16291 NM_020725 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 247-4 chr10 59279010 59279430 + 0.75 NA intron (NM_001347852, intron 6 of 12) MER5B|DNA|hAT-Charlie 83329 NM_198215 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 195.25-8 chr12 71235675 71236154 + 0.75 NA Intergenic MER5B|DNA|hAT-Charlie -77915 NM_004616 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 212.25-44 chr7 107854213 107854653 + 0.75 NA Intergenic Intergenic -36674 NM_001289752 1738 Hs.131711 NM_000108 ENSG00000091140 DLD DLDD|DLDH|E3|GCSL|LAD|PHE3 dihydrolipoamide dehydrogenase protein-coding 307.5-8 chr5 23983718 23984297 + 0.75 NA intron (NR_131245, intron 4 of 4) L1MA8|LINE|L1 32659 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 167.25-62 chr5 52001949 52002336 + 0.75 NA Intergenic Intergenic -5889 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 166.75-7 chr1 246442978 246443310 + 0.75 NA intron (NM_001167740, intron 1 of 11) intron (NM_001167740, intron 1 of 11) -25732 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 146-28 chr16 25412312 25412573 + 0.75 NA Intergenic Intergenic -154597 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 221.75-2 chr1 67581570 67582161 + 0.75 NA Intergenic Intergenic -103336 NM_001199742 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 154.25-95 chrX 145149058 145149440 + 0.75 NA Intergenic L1PB1|LINE|L1 -98254 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 208.25-30 chr5 164182341 164182676 + 0.75 NA Intergenic Intergenic 284894 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 190.25-47 chr7 1702511 1702959 + 0.75 NA intron (NM_001128636, intron 1 of 2) L1ME3B|LINE|L1 14616 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding 171.5-42 chr2 50014227 50014589 + 0.75 NA intron (NM_001330093, intron 21 of 22) MER20|DNA|hAT-Charlie -40205 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 190.25-36 chr5 115275573 115276092 + 0.75 NA intron (NM_001040440, intron 5 of 9) intron (NM_001040440, intron 5 of 9) -12955 NM_005023 5229 Hs.254006 NM_005023 ENSG00000164219 PGGT1B BGGI|GGTI protein geranylgeranyltransferase type I subunit beta protein-coding 209.75-36 chr6 141800983 141801516 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR 287550 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 159-3 chr1 76428847 76429207 + 0.75 NA intron (NM_001349109, intron 3 of 3) intron (NM_001349109, intron 3 of 3) 350240 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 187.5-45 chr3 103491571 103491969 + 0.75 NA Intergenic Intergenic 32346 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 188.75 chr1 90301000 90301440 + 0.75 NA Intergenic L1ME3|LINE|L1 306110 NM_001320185 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 164.75-6 chr1 187436055 187436469 + 0.75 NA Intergenic Intergenic -7366 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 173-66 chr6 73402715 73403012 + 0.75 NA intron (NM_018665, intron 4 of 16) AluSz6|SINE|Alu 8035 NM_018665 55510 Hs.125507 NM_018665 ENSG00000080007 DDX43 CT13|HAGE DEAD-box helicase 43 protein-coding 201.5-56 chr6 68714693 68715128 + 0.75 NA intron (NM_001704, intron 3 of 31) MIR|SINE|MIR 79628 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 379.25 chr17 61317615 61318372 + 0.75 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 49711 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 170-13 chr11 80856113 80856388 + 0.75 NA Intergenic Intergenic -93447 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 168.5-83 chr5 89531831 89532136 + 0.75 NA Intergenic Intergenic 484737 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 219.25-7 chr11 44255380 44255703 + 0.75 NA Intergenic Intergenic 54598 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 149.75-101 chr8 105527277 105527615 + 0.75 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 207903 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 151.5-80 chr5 17279495 17279866 + 0.75 NA Intergenic Intergenic 62049 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 182.5-79 chr8 88611662 88612043 + 0.75 NA Intergenic Intergenic -284369 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 161.5-21 chr11 44017577 44017853 + 0.75 NA Intergenic MIR|SINE|MIR -30266 NM_001363113 390110 Hs.558851 NM_001031854 ENSG00000205126 ACCSL - 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like protein-coding 145.75-23 chr12 71240566 71240972 + 0.75 NA Intergenic MER89-int|LTR|ERV1 -82770 NM_004616 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 309-5 chr2 21221021 21221760 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 97404 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 247.75-22 chr4 142726698 142727373 + 0.75 NA intron (NM_001331040, intron 1 of 25) intron (NM_001331040, intron 1 of 25) 119500 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 204.25-53 chr8 92654032 92654434 + 0.75 NA intron (NR_125827, intron 1 of 4) intron (NR_125827, intron 1 of 4) 1261 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 152-19 chr14 27099201 27099431 + 0.75 NA Intergenic Intergenic 190674 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 158.75-55 chr3 162902556 162903025 + 0.75 NA Intergenic L1MA6|LINE|L1 400511 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 264-5 chr15 26954718 26955293 + 0.75 NA Intergenic L1MC4a|LINE|L1 -16176 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 232.5-38 chr4 150496186 150496839 + 0.75 NA intron (NM_001367550, intron 40 of 56) intron (NM_001367550, intron 40 of 56) -82577 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 150.5-54 chr2 17498325 17498732 + 0.75 NA Intergenic Intergenic 19912 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 146-63 chr4 160447408 160447775 + 0.75 NA Intergenic Intergenic -669807 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 303.5-5 chr12 115736514 115737029 + 0.75 NA Intergenic Intergenic 411883 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 233.25-24 chr4 47583357 47583799 + 0.75 NA intron (NM_020453, intron 21 of 22) intron (NM_020453, intron 21 of 22) -69091 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 150.25-68 chr3 186965188 186965618 + 0.75 NA intron (NM_173216, intron 2 of 7) intron (NM_173216, intron 2 of 7) 34877 NM_173217 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 173-28 chr14 28453818 28454131 + 0.75 NA Intergenic L1MA9|LINE|L1 311345 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 173.25-60 chr5 11440798 11441062 + 0.75 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 147987 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 172.75-45 chr4 30401697 30402062 + 0.75 NA Intergenic Intergenic -318490 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 172.75-63 chr7 28133185 28133515 + 0.75 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -47107 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 243.5-3 chr10 107084431 107084920 + 0.75 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 80031 NM_001206570 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 233-14 chr17 56246824 56247305 + 0.75 NA intron (NM_001370326, intron 3 of 20) Tigger8|DNA|TcMar-Tigger 93589 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 201.75-38 chr8 74264551 74265009 + 0.75 NA intron (NM_020647, intron 2 of 5) L4_C_Mam|LINE|RTE-X 56581 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 209.25-48 chr8 55133673 55134129 + 0.75 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 31873 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 168.75-26 chr15 85919598 85920039 + 0.75 NA Intergenic Intergenic 94183 NR_049805 100847084 NR_049805 ENSG00000264406 MIR548AP - microRNA 548ap ncRNA 151.5-67 chr3 101371844 101372189 + 0.75 NA exon (NM_001282803, exon 4 of 21) exon (NM_001282803, exon 4 of 21) -51441 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 210-25 chr2 74316504 74316969 + 0.75 NA intron (NM_133478, intron 5 of 30) MER49|LTR|ERV1 -1711 NM_021196 57835 Hs.594099 NM_021196 ENSG00000188687 SLC4A5 NBC4|NBCe2 solute carrier family 4 member 5 protein-coding 176.75 chr1 38143718 38144094 + 0.75 NA Intergenic HERV16-int|LTR|ERVL 54675 NR_037432 100500801 NR_037432 ENSG00000265596 MIR3659 mir-3659 microRNA 3659 ncRNA 192.75-8 chr10 88461377 88461732 + 0.75 NA intron (NM_018363, intron 4 of 6) L2c|LINE|L2 121764 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 244.75-5 chr11 104120184 104120829 + 0.75 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) 43641 NM_025208 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 171.75-19 chr12 27496133 27496410 + 0.75 NA intron (NM_001145010, intron 8 of 8) intron (NM_001145010, intron 8 of 8) -27935 NM_001198916 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 360 chr11 38209250 38209871 + 0.75 NA Intergenic Intergenic 270959 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 209.75-40 chr8 61258023 61258512 + 0.75 NA Intergenic Intergenic -29703 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 282 chr1 45273519 45274162 + 0.75 NA Intergenic AluJo|SINE|Alu -30070 NR_024270 400752 Hs.334348 NR_024270 ENSG00000281912 LINC01144 - long intergenic non-protein coding RNA 1144 ncRNA 201.5-10 chr13 73691297 73691746 + 0.75 NA 3' UTR (NM_007249, exon 8 of 8) 3' UTR (NM_007249, exon 8 of 8) 127277 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 250-7 chr16 84670751 84671224 + 0.75 NA Intergenic Intergenic 22476 NM_001303451 79786 Hs.222731 NM_024731 ENSG00000135686 KLHL36 C16orf44 kelch like family member 36 protein-coding 276.5-13 chr7 34892815 34893473 + 0.75 NA Intergenic Intergenic 47690 NR_031666 100302152 NR_031666 ENSG00000221669 MIR548N MIRN548N|hsa-mir-548n microRNA 548n ncRNA 243.25-18 chr3 111330297 111330950 + 0.75 NA Intergenic MER5A1|DNA|hAT-Charlie -211574 NM_005816 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 252.25-20 chr9 30921234 30921784 + 0.75 NA Intergenic MIR|SINE|MIR 459981 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 187-4 chr11 37512529 37512820 + 0.75 NA Intergenic Intergenic -425927 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 152-26 chr15 67668609 67668835 + 0.75 NA intron (NM_001206804, intron 13 of 21) intron (NM_001206804, intron 13 of 21) 119628 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 237.5-23 chr4 116376398 116376949 + 0.75 NA Intergenic Intergenic 76948 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 163.5-4 chr1 95993824 95994354 + 0.75 NA intron (NR_125991, intron 2 of 4) Charlie1a|DNA|hAT-Charlie 2021 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 293-8 chr5 119629736 119630495 + 0.75 NA intron (NM_001163991, intron 1 of 3) AluY|SINE|Alu 556 NM_182761 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 187-44 chr5 38073931 38074528 + 0.75 NA intron (NR_147009, intron 2 of 2) (T)n|Simple_repeat|Simple_repeat 48532 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 146-19 chr14 57557620 57557870 + 0.75 NA Intergenic Intergenic -63888 NM_001283057 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 162.5-40 chr2 22413181 22413434 + 0.75 NA Intergenic MIR|SINE|MIR -123172 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 256.75-20 chr4 143403582 143404122 + 0.75 NA intron (NM_207123, intron 1 of 10) intron (NM_207123, intron 1 of 10) 60392 NR_036091 100423017 NR_036091 ENSG00000265623 MIR3139 - microRNA 3139 ncRNA 159.25-61 chr5 3588909 3589324 + 0.75 NA Intergenic Intergenic -6716 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 254-18 chrX 96987248 96987863 + 0.75 NA intron (NM_007309, intron 17 of 26) intron (NM_007309, intron 17 of 26) 103647 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 237.5-22 chr3 119925126 119925765 + 0.75 NA intron (NM_002093, intron 3 of 11) L2a|LINE|L2 142735 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 233-2 chr1 188152701 188153256 + 0.75 NA Intergenic Intergenic 709350 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 146.75-75 chr3 100536003 100536269 + 0.75 NA intron (NM_001363876, intron 2 of 6) MER20|DNA|hAT-Charlie 43517 NM_018004 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 191.25-65 chr9 24384859 24385302 + 0.75 NA Intergenic Intergenic 160596 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 148.25-29 chr14 37566900 37567247 + 0.75 NA Intergenic AmnSINE2|SINE|tRNA-Deu 28176 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 157.5-99 chr7 117643702 117644094 + 0.75 NA intron (NM_000492, intron 23 of 26) intron (NM_000492, intron 23 of 26) -79222 NR_149084 111082987 Hs.583149 NR_149084 ENSG00000232661 CFTR-AS1 BGas CFTR antisense RNA 1 ncRNA 186.75-58 chr3 130336143 130336720 + 0.75 NA Intergenic L1MA2|LINE|L1 -9085 NM_001278298 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 211-2 chr1 39298791 39299182 + 0.75 NA intron (NM_012090, intron 20 of 92) intron (NM_012090, intron 20 of 92) -110087 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 272.5-12 chr3 80082906 80083615 + 0.75 NA Intergenic MLT1A1|LTR|ERVL-MaLR -315262 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 147.5-106 chr8 103443328 103443554 + 0.75 NA TTS (NM_015420) TTS (NM_015420) 28055 NM_015420 25879 Hs.532265 NM_015420 ENSG00000164934 DCAF13 GM83|HSPC064|Sof1|WDSOF1 DDB1 and CUL4 associated factor 13 protein-coding 162-21 chr13 37957846 37958220 + 0.75 NA Intergenic L1M3|LINE|L1 -87608 NM_001354806 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 168-26 chr18 13513729 13514117 + 0.75 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) 53976 NR_049822 100847080 NR_049822 ENSG00000266146 MIR5190 - microRNA 5190 ncRNA 150.25-98 chr7 49901893 49902367 + 0.75 NA intron (NR_136188, intron 2 of 3) L1MD2|LINE|L1 126797 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 260.75-17 chr3 46029845 46030252 + 0.75 NA Intergenic L1M4|LINE|L1 -2565 NM_005283 2829 Hs.128375 NM_005283 ENSG00000173578 XCR1 CCXCR1|GPR5 X-C motif chemokine receptor 1 protein-coding 187.25-52 chr5 84972634 84973025 + 0.75 NA Intergenic L1MEc|LINE|L1 -587949 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 168.75-71 chr3 128291391 128291797 + 0.75 NA intron (NM_021937, intron 4 of 6) MSTD|LTR|ERVL-MaLR -137680 NM_001319086 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 146.5-105 chr8 132328243 132328520 + 0.75 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 118881 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 201.5-20 chr17 57048013 57048541 + 0.75 NA Intergenic Intergenic 2799 NR_002818 376412 Hs.132299 NR_002818 ENSG00000261192 RNF126P1 - ring finger protein 126 pseudogene 1 pseudo 178.75-49 chr4 58171265 58171588 + 0.75 NA Intergenic L2a|LINE|L2 364902 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 184.5-18 chr11 55592050 55592341 + 0.75 NA Intergenic L1MC1|LINE|L1 12203 NM_001004700 219429 Hs.553620 NM_001004700 ENSG00000172188 OR4C11 OR11-136|OR4C11P olfactory receptor family 4 subfamily C member 11 protein-coding 243-8 chr18 39098939 39099312 + 0.75 NA Intergenic MLT1K|LTR|ERVL-MaLR 523050 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 271.75-19 chr6 127327015 127327714 + 0.75 NA intron (NM_001105545, intron 1 of 3) intron (NM_001105545, intron 1 of 3) 15043 NM_001139510 55862 Hs.486410 NM_018479 ENSG00000093144 ECHDC1 HEL-S-76|MMCD|dJ351K20.2 ethylmalonyl-CoA decarboxylase 1 protein-coding 206.5-24 chr22 27992684 27993136 + 0.75 NA intron (NM_001145418, intron 18 of 22) intron (NM_001145418, intron 18 of 22) -72298 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 164.75-40 chr2 75924790 75925238 + 0.75 NA Intergenic Tigger2a|DNA|TcMar-Tigger -214099 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 296-6 chr3 70576620 70577362 + 0.75 NA Intergenic Intergenic -264353 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 168.75-3 chr1 119333510 119333934 + 0.75 NA intron (NR_146623, intron 2 of 3) LTR12C|LTR|ERV1 5470 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 156.25-87 chr7 52582427 52582772 + 0.75 NA Intergenic Intergenic -453034 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 159.5 chr1 33346380 33346782 + 0.75 NA intron (NM_198040, intron 8 of 13) intron (NM_198040, intron 8 of 13) 3318 NM_004427 1912 Hs.524271 NM_004427 ENSG00000134686 PHC2 EDR2|HPH2|PH2 polyhomeotic homolog 2 protein-coding 238.25-17 chr2 152106763 152107251 + 0.75 NA Intergenic MIR3|SINE|MIR -7840 NM_000726 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 146.75-116 chr8 71270752 71271084 + 0.75 NA intron (NM_001370336, intron 11 of 17) AluSc|SINE|Alu 85788 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 225.5-54 chr9 31618346 31618961 + 0.75 NA Intergenic Intergenic -237163 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 212-18 chr2 29825704 29826043 + 0.75 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 95713 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 193.5-55 chr4 116053394 116053760 + 0.75 NA Intergenic Intergenic -246148 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 349.75-2 chr10 71461234 71461766 + 0.75 NA intron (NM_052836, intron 3 of 12) intron (NM_052836, intron 3 of 12) 50420 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 173.5-31 chr2 36947279 36947565 + 0.75 NA intron (NM_003162, intron 1 of 17) intron (NM_003162, intron 1 of 17) 19114 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 180.75-12 chr11 105465480 105465881 + 0.75 NA Intergenic HAL1ME|LINE|L1 -144393 NM_001077243 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 231.75-25 chr5 145649974 145650524 + 0.75 NA Intergenic L1MEg|LINE|L1 185093 NM_138492 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 216.25-10 chr11 101036868 101037174 + 0.75 NA non-coding (NR_073142, exon 7 of 7) non-coding (NR_073142, exon 7 of 7) 92042 NR_073141 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 189.5-47 chr4 37006582 37006977 + 0.75 NA intron (NR_134669, intron 1 of 1) L1ME3B|LINE|L1 5000 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 261.75-18 chr6 22255029 22255394 + 0.75 NA Intergenic L1ME4a|LINE|L1 41825 NM_000948 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 165.5-86 chr7 8159948 8160371 + 0.75 NA intron (NM_001350836, intron 7 of 14) intron (NM_001350836, intron 7 of 14) 101893 NM_001350825 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 229-16 chr3 89096614 89097129 + 0.75 NA Intergenic Intergenic -10750 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 162.25-17 chr14 45937488 45937856 + 0.75 NA Intergenic L1MCb|LINE|L1 -126487 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 164.75-45 chr2 136255072 136255483 + 0.75 NA Intergenic MIRb|SINE|MIR -137122 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 158.25-64 chr3 74715864 74716224 + 0.75 NA Intergenic L1ME1|LINE|L1 -194904 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 214.75-32 chr4 36581987 36582447 + 0.75 NA intron (NR_149124, intron 3 of 4) (CATTGT)n|Simple_repeat|Simple_repeat 59683 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 203.25-3 chr1 98008132 98008571 + 0.75 NA intron (NR_046105, intron 3 of 4) intron (NR_046105, intron 3 of 4) 37000 NR_039604 100616452 NR_039604 ENSG00000284247 MIR2682 mir-2682 microRNA 2682 ncRNA 176.75-73 chr5 168199974 168200359 + 0.75 NA intron (NM_001368145, intron 16 of 26) intron (NM_001368145, intron 16 of 26) 32206 NR_109894 101927862 Hs.659376 NR_109894 ENSG00000253978 CTB-178M22.2 - uncharacterized LOC101927862 ncRNA 244.25-6 chr11 110500660 110501045 + 0.75 NA Intergenic L1MB4|LINE|L1 70904 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 303-5 chr15 98869968 98870395 + 0.75 NA intron (NM_000875, intron 2 of 20) L1MB3|LINE|L1 85755 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 191-31 chr2 66032598 66033176 + 0.75 NA Intergenic Intergenic 325441 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 148.5-52 chr20 42321415 42321742 + 0.75 NA intron (NM_133170, intron 11 of 31) intron (NM_133170, intron 11 of 31) -363905 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 208.25-10 chr10 97711607 97712163 + 0.75 NA Intergenic Intergenic -1845 NM_031484 83742 Hs.744073 NM_031484 ENSG00000155254 MARVELD1 GB14|MARVD1|MRVLDC1|bA548K23.8 MARVEL domain containing 1 protein-coding 297.5-2 chr1 223215266 223216063 + 0.75 NA Intergenic Intergenic -72416 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 284.25-8 chr8 88787123 88787886 + 0.75 NA Intergenic Intergenic -460021 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 154.75-71 chr4 30911930 30912271 + 0.75 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 191731 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 251.5-3 chr10 54658611 54659075 + 0.75 NA intron (NM_001142771, intron 2 of 34) L1PA17|LINE|L1 -50886 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 223.5-35 chr6 55399161 55399506 + 0.75 NA intron (NM_207410, intron 7 of 8) intron (NM_207410, intron 7 of 8) 71864 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 170.5-58 chr5 41645749 41645990 + 0.75 NA Intergenic Intergenic -135268 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 220.75-36 chr6 98439581 98440057 + 0.75 NA Intergenic L1MCa|LINE|L1 391881 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 282.75-3 chr16 65987959 65988533 + 0.75 NA Intergenic Intergenic -378445 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 270-15 chr7 19406588 19406999 + 0.75 NA Intergenic L2a|LINE|L2 -261372 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 158.5-72 chr4 53883495 53883823 + 0.75 NA Intergenic L1MEf|LINE|L1 103623 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 146.25-92 chr8 50299872 50300210 + 0.75 NA intron (NR_135797, intron 2 of 20) MIR|SINE|MIR 135910 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 150-14 chr11 9051481 9051865 + 0.75 NA intron (NM_001330199, intron 12 of 21) MIRb|SINE|MIR 38706 NR_049874 100847015 NR_049874 ENSG00000264984 MIR5691 - microRNA 5691 ncRNA 255.25-4 chr12 10662485 10662951 + 0.75 NA intron (NM_018423, intron 1 of 10) L1MB7|LINE|L1 11334 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 161.25-56 chr5 28941939 28942210 + 0.75 NA Intergenic L1MA3|LINE|L1 15204 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 185.25-53 chr3 72836006 72836282 + 0.75 NA intron (NM_018130, intron 4 of 10) L2a|LINE|L2 12301 NM_018130 55164 Hs.606584 NM_018130 ENSG00000144736 SHQ1 GRIM-1|Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 188.5-35 chr3 26579869 26580257 + 0.75 NA Intergenic L1ME4a|LINE|L1 -42743 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 165.25-5 chr10 11718950 11719386 + 0.75 NA Intergenic Intergenic -23214 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 240.5-28 chr7 79506983 79507402 + 0.75 NA Intergenic Intergenic 53232 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 151.75-50 chr2 142083593 142083966 + 0.75 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 47922 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 176.5-49 chr21 23294890 23295229 + 0.75 NA Intergenic Intergenic 89776 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 323-4 chr2 161152196 161152807 + 0.75 NA intron (NM_004180, intron 1 of 7) L1MB5|LINE|L1 -7927 NM_001199135 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 169-9 chr10 110520559 110520791 + 0.75 NA Intergenic L1M5|LINE|L1 22768 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 238.5-5 chr1 181687769 181688180 + 0.75 NA intron (NM_001205293, intron 7 of 47) intron (NM_001205293, intron 7 of 47) 204457 NM_001205294 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 281-5 chr17 20246864 20247247 + 0.75 NA intron (NM_001033553, intron 8 of 14) intron (NM_001033553, intron 8 of 14) -74119 NR_023380 348254 Hs.462475 NR_023380 CCDC144CP CCDC144C coiled-coil domain containing 144C, pseudogene pseudo 359.5 chr10 55587411 55588378 + 0.75 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -11148 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 257.75-6 chr12 89607158 89607740 + 0.75 NA intron (NM_001001323, intron 15 of 21) intron (NM_001001323, intron 15 of 21) -81187 NM_001199782 100528030 Hs.25130 NM_001199781 ENSG00000259075 POC1B-GALNT4 GALNT4|GalNAc-T4 POC1B-GALNT4 readthrough protein-coding 169.25-4 chr11 75466992 75467324 + 0.75 NA intron (NM_030792, intron 3 of 16) MIRb|SINE|MIR -14831 NM_001351167 81544 Hs.503297 NM_030792 ENSG00000158555 GDPD5 GDE2|PP1665 glycerophosphodiester phosphodiesterase domain containing 5 protein-coding 191.25-36 chr2 43279571 43279999 + 0.75 NA exon (NM_001345923, exon 36 of 38) exon (NM_001345923, exon 36 of 38) 52574 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 204.5-19 chr2 176341235 176341759 + 0.75 NA Intergenic Intergenic 72055 NM_006554 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 244-5 chr12 86725847 86726182 + 0.75 NA intron (NM_001351285, intron 2 of 8) intron (NM_001351285, intron 2 of 8) 19135 NR_162123 113839519 NR_162123 MIR3059 - microRNA 3059 ncRNA 230-28 chr5 96462204 96462569 + 0.75 NA intron (NR_130776, intron 4 of 4) intron (NR_130776, intron 4 of 4) -29138 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 196.25-26 chr17 72228374 72228748 + 0.75 NA Intergenic AluSz|SINE|Alu 107541 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 158.5-30 chr15 89506926 89507316 + 0.75 NA intron (NR_027074, intron 2 of 2) AluSg4|SINE|Alu -10538 NM_001321041 51458 Hs.459284 NM_016321 ENSG00000140519 RHCG C15orf6|PDRC2|RHGK|SLC42A3 Rh family C glycoprotein protein-coding 241.75-15 chr4 60478408 60478874 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR -443978 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 156-82 chr6 129274897 129275127 + 0.75 NA intron (NM_000426, intron 17 of 64) intron (NM_000426, intron 17 of 64) 391871 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 170.5-37 chr2 97722687 97722930 + 0.75 NA intron (NM_001079, intron 2 of 13) L1ME2z|LINE|L1 9240 NM_001079 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 158.75-42 chr2 154543781 154544113 + 0.75 NA Intergenic L1ME2|LINE|L1 -86509 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 193.75-33 chr2 7199947 7200309 + 0.75 NA Intergenic Intergenic -122248 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 195.75-28 chr17 44406766 44407204 + 0.75 NA intron (NM_001002909, intron 6 of 7) intron (NM_001002909, intron 6 of 7) -17336 NM_000419 3674 Hs.411312 NM_000419 ENSG00000005961 ITGA2B BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GTA|HPA3|PPP1R93 integrin subunit alpha 2b protein-coding 281-11 chr6 126882475 126882900 + 0.75 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -235984 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 166.75-26 chr14 52537166 52537569 + 0.75 NA intron (NM_001160047, intron 5 of 20) MIR|SINE|MIR 15138 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 161-6 chr1 213192389 213192616 + 0.75 NA intron (NR_146209, intron 8 of 11) L1MA2|LINE|L1 141261 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 210.75-41 chr7 35807945 35808519 + 0.75 NA intron (NM_001788, intron 1 of 12) L1ME4b|LINE|L1 7013 NM_001363715 989 Hs.191346 NM_001788 ENSG00000122545 SEPTIN7 CDC10|CDC3|NBLA02942|SEPT7|SEPT7A septin 7 protein-coding 233.25-23 chr3 96124976 96125460 + 0.75 NA Intergenic L1MA10|LINE|L1 -234746 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 254.75-23 chr7 75061130 75061616 + 0.75 NA intron (NM_001281441, intron 5 of 8) intron (NM_001281441, intron 5 of 8) 12429 NM_001363447 81554 Hs.529623 NM_030798 ENSG00000274523 RCC1L WBSCR16 RCC1 like protein-coding 273.5-2 chr1 199211418 199211946 + 0.75 NA intron (NR_147896, intron 3 of 3) intron (NR_147896, intron 3 of 3) 63084 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 236.5-41 chr9 120269611 120270114 + 0.75 NA Intergenic L1PA6|LINE|L1 -24812 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 205-27 chr2 115844422 115844875 + 0.75 NA 3' UTR (NM_001321905, exon 27 of 27) 3' UTR (NM_001321905, exon 27 of 27) 500833 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 183.75-34 chr16 55311164 55311581 + 0.75 NA Intergenic Intergenic -13187 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 153.75-9 chr12 597582 597994 + 0.75 NA intron (NM_016533, intron 1 of 3) intron (NM_016533, intron 1 of 3) -11302 NR_134624 105369595 Hs.504422 NR_134624 LOC105369595 - uncharacterized LOC105369595 ncRNA 164.75-13 chr10 115673579 115673960 + 0.75 NA intron (NM_207303, intron 26 of 28) MLT1G3|LTR|ERVL-MaLR 521020 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 180-36 chr2 179529942 179530299 + 0.75 NA intron (NM_001352811, intron 4 of 10) intron (NM_001352811, intron 4 of 10) 32468 NM_001113398 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 184.5-47 chr2 184920802 184921141 + 0.75 NA intron (NM_194250, intron 2 of 3) MLT1E2|LTR|ERVL-MaLR 246101 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 189.5-59 chr6 68142096 68142472 + 0.75 NA Intergenic L1M1|LINE|L1 86933 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 226.75-20 chr3 97033560 97033981 + 0.75 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 219176 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 254.5-16 chr2 50196729 50197317 + 0.75 NA intron (NM_001330093, intron 18 of 22) L1PA14|LINE|L1 150731 NM_001330097 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 162.25-21 chr14 55428362 55428663 + 0.75 NA intron (NM_199047, intron 5 of 6) MER5A|DNA|hAT-Charlie 12033 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 149.5-71 chr5 18280140 18280410 + 0.75 NA Intergenic AluJr|SINE|Alu 473001 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 155-20 chr12 10209092 10209447 + 0.75 NA Intergenic L1MC5a|LINE|L1 -3608 NM_031412 23710 Hs.524250 NM_031412 ENSG00000139112 GABARAPL1 APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1 GABA type A receptor associated protein like 1 protein-coding 175.75-55 chr5 28148914 28149167 + 0.75 NA Intergenic Intergenic 138625 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 223.5-7 chr10 66555972 66556587 + 0.75 NA intron (NM_001127384, intron 10 of 17) L1MA9|LINE|L1 -369757 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 190.75-70 chr8 108199447 108199759 + 0.75 NA Intergenic MER1B|DNA|hAT-Charlie 49114 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 148.25-76 chr6 64915848 64916082 + 0.75 NA intron (NM_001292009, intron 15 of 43) intron (NM_001292009, intron 15 of 43) -385453 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 149.5-32 chr17 48464505 48464746 + 0.75 NA intron (NR_110804, intron 5 of 5) MIRc|SINE|MIR 19792 NR_110804 101927166 Hs.149244 NR_110804 LOC101927166 - uncharacterized LOC101927166 ncRNA 162.5-82 chr7 52261433 52261817 + 0.75 NA Intergenic Intergenic -774008 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 233.25-18 chr2 166456451 166456970 + 0.75 NA intron (NR_045628, intron 10 of 25) intron (NR_045628, intron 10 of 25) 30261 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 217.25-41 chr7 80271941 80272599 + 0.75 NA Intergenic L2a|LINE|L2 102169 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 153-43 chr2 193315584 193315961 + 0.75 NA Intergenic Intergenic 565927 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 173.75-31 chr19 4240975 4241376 + 0.75 NA Intergenic AluJr|SINE|Alu -5905 NM_018074 55702 Hs.21811 NM_018074 ENSG00000105248 YJU2 CCDC94 YJU2 splicing factor homolog protein-coding 196-30 chr21 28178041 28178416 + 0.75 NA intron (NR_126012, intron 3 of 5) intron (NR_126012, intron 3 of 5) 50439 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 150-72 chr4 183350889 183351244 + 0.75 NA Intergenic Intergenic -28640 NM_001185149 100132463 Hs.727475 NM_001185149 ENSG00000185758 CLDN24 CLDN21 claudin 24 protein-coding 180.5-51 chr3 164937074 164937423 + 0.75 NA Intergenic Intergenic -105768 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 159.5-70 chr4 136231714 136232021 + 0.75 NA Intergenic Intergenic -318187 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 282.5-7 chr14 27730929 27731509 + 0.75 NA Intergenic Intergenic -57998 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 313.75-5 chr14 55567502 55568107 + 0.75 NA Intergenic L1M5|LINE|L1 12288 NR_027123 100129075 Hs.633724 NR_027123 ENSG00000186615 KTN1-AS1 C14orf33|MYCLo-3 KTN1 antisense RNA 1 ncRNA 221.5-38 chr4 100876047 100876423 + 0.75 NA Intergenic L1ME1|LINE|L1 -201122 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 179.5-69 chr7 16282167 16282642 + 0.75 NA intron (NR_160656, intron 3 of 7) MLT1E3|LTR|ERVL-MaLR 71918 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 203.25-2 chr1 51759009 51759332 + 0.75 NA intron (NM_001350210, intron 7 of 21) intron (NM_001350210, intron 7 of 21) 29320 NM_148905 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 188-43 chr3 128959380 128959872 + 0.75 NA intron (NM_001348520, intron 8 of 14) intron (NM_001348520, intron 8 of 14) 32271 NM_001348523 57501 Hs.518247 NM_020741 ENSG00000114656 KIAA1257 - KIAA1257 protein-coding 148.5-36 chr18 48640981 48641358 + 0.75 NA intron (NM_014772, intron 3 of 11) intron (NM_014772, intron 3 of 11) -29431 NR_039897 100616366 NR_039897 ENSG00000266276 MIR4743 - microRNA 4743 ncRNA 259.25 chr12 1759135 1759822 + 0.75 NA intron (NM_024551, intron 2 of 7).2 intron (NM_024551, intron 2 of 7).2 -60789 NM_001163925 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 186.25-3 chr1 233870730 233871123 + 0.75 NA Intergenic Intergenic -33750 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 203-23 chr2 52822801 52823278 + 0.75 NA Intergenic L2c|LINE|L2 -120424 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 206.75-18 chr17 4783385 4783947 + 0.75 NA TTS (NM_003963) TTS (NM_003963) 2698 NM_001144940 284013 Hs.122561 NM_182566 ENSG00000182853 VMO1 ERGA6350|PRO21055 vitelline membrane outer layer 1 homolog protein-coding 186-27 chr2 233408518 233408873 + 0.75 NA intron (NM_152879, intron 3 of 29) intron (NM_152879, intron 3 of 29) 20541 NM_003648 8527 Hs.471675 NM_003648 ENSG00000077044 DGKD DGKdelta|dgkd-2 diacylglycerol kinase delta protein-coding 241.5-19 chr4 64910027 64910368 + 0.75 NA Intergenic L1MC3|LINE|L1 94303 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 208.75-8 chr13 58669835 58670439 + 0.75 NA Intergenic LTR80B|LTR|ERVL -437020 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 190.75-59 chr6 6356067 6356372 + 0.75 NA intron (NR_026970, intron 6 of 7) intron (NR_026970, intron 6 of 7) -35528 NM_000129 2162 Hs.335513 NM_000129 ENSG00000124491 F13A1 F13A coagulation factor XIII A chain protein-coding 195.5-10 chr12 22861666 22862026 + 0.75 NA Intergenic Intergenic 236675 NM_001039481 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 331.25-4 chr2 24724669 24725507 + 0.75 NA intron (NM_001362950, intron 14 of 23) intron (NM_001362950, intron 14 of 23) -68027 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 238.75-30 chr8 64815953 64816381 + 0.75 NA Intergenic MIRb|SINE|MIR -17430 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 163.75-64 chr6 62703967 62704262 + 0.75 NA Intergenic L1M1|LINE|L1 -417887 NM_001350622 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 171.75-59 chr4 115505857 115506265 + 0.75 NA Intergenic L1MCa|LINE|L1 -392441 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 174.5-89 chr8 138013651 138013962 + 0.75 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 69739 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 164-25 chr18 42139471 42139778 + 0.75 NA Intergenic MLT1A1|LTR|ERVL-MaLR -47044 NR_046174 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 306 chr1 11670740 11671345 + 0.75 NA intron (NM_018438, intron 2 of 5) intron (NM_018438, intron 2 of 5) 6842 NM_018438 26270 Hs.464419 NM_018438 ENSG00000116663 FBXO6 FBG2|FBS2|FBX6|Fbx6b F-box protein 6 protein-coding 223.25-35 chr8 118404501 118404976 + 0.75 NA intron (NM_001349811, intron 3 of 4) MER5A|DNA|hAT-Charlie -216263 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 146.75-33 chr16 5490650 5490957 + 0.75 NA Intergenic Intergenic 125447 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 179-50 chr5 153153045 153153343 + 0.75 NA Intergenic L1PA16|LINE|L1 -180845 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 169.5-40 chr2 2426242 2426525 + 0.75 NA Intergenic (ATT)n|Simple_repeat|Simple_repeat -95108 NM_001329844 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 192.75-25 chr18 65385350 65385771 + 0.75 NA Intergenic L1MC4a|LINE|L1 -364692 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 184-54 chr7 44835387 44835791 + 0.75 NA exon (NM_201517, exon 3 of 4) exon (NM_201517, exon 3 of 4) 12537 NM_201517 94239 Hs.488189 NM_012412 ENSG00000105968 H2AFV H2A.Z-2|H2AV H2A histone family member V protein-coding 150.75-3 chr1 164903078 164903385 + 0.75 NA Intergenic L3|LINE|CR1 -128590 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 257.75 chr1 234781053 234781771 + 0.75 NA Intergenic Intergenic -21356 NR_148962 100130249 Hs.617350 NR_148962 ENSG00000279261 PP2672 - uncharacterized LOC100130249 ncRNA 269.5-10 chr18 21701015 21701702 + 0.75 NA intron (NM_138340, intron 3 of 8) AluJb|SINE|Alu 3416 NM_001308256 171586 Hs.397978 NM_138340 ENSG00000158201 ABHD3 LABH3 abhydrolase domain containing 3 protein-coding 156.75-102 chr8 125318800 125319134 + 0.75 NA intron (NM_001349486, intron 5 of 7) L1ME1|LINE|L1 -111391 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 294.5-5 chr3 146982718 146983559 + 0.75 NA Intergenic Intergenic 61215 NR_135560 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 214.25-32 chr7 4840387 4841060 + 0.75 NA intron (NM_018059, intron 2 of 14) AluSc|SINE|Alu -3273 NR_145804 109623455 NR_145804 SNORD165 - small nucleolar RNA, C/D box 165 snoRNA 252-12 chr7 104745058 104745465 + 0.75 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) 58831 NR_034142 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 200.5-37 chr22 31102992 31103285 + 0.75 NA intron (NM_001207018, intron 19 of 19) intron (NM_001207018, intron 19 of 19) 4430 NM_080430 140606 Hs.55940 NM_080430 ENSG00000198832 SELENOM SELM|SEPM selenoprotein M protein-coding 172-48 chr3 33513260 33513695 + 0.75 NA intron (NM_001365634, intron 33 of 35) AluSz|SINE|Alu -73072 NM_014517 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 279.25-15 chr7 88400389 88400942 + 0.75 NA Intergenic L2c|LINE|L2 -93771 NM_024636 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 193-15 chr12 14404872 14405227 + 0.75 NA intron (NM_181352, intron 1 of 14) intron (NM_181352, intron 1 of 14) 19768 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 215.25-48 chr8 113059231 113059563 + 0.75 NA intron (NM_001363185, intron 5 of 66) intron (NM_001363185, intron 5 of 66) 317755 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 155.5-108 chr8 131103682 131103907 + 0.75 NA Intergenic Intergenic -62885 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 158.25-28 chr11 133037436 133037800 + 0.75 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) -93850 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 208.25-11 chr10 116160707 116161077 + 0.75 NA intron (NM_145793, intron 3 of 8) intron (NM_145793, intron 3 of 8) 33897 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 210.5 chr1 109144861 109145218 + 0.75 NA intron (NM_001284352, intron 1 of 20) MLT1A1|LTR|ERVL-MaLR 30924 NM_020775 57535 Hs.708190 NM_020775 ENSG00000116299 KIAA1324 EIG121 KIAA1324 protein-coding 263.25-21 chr5 125908882 125909464 + 0.75 NA Intergenic MER30|DNA|hAT-Charlie -270404 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 195.25-37 chr3 103678093 103678448 + 0.75 NA Intergenic Intergenic -154154 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 159-22 chr14 67262700 67262958 + 0.75 NA intron (NM_001256550, intron 1 of 14) intron (NM_001256550, intron 1 of 14) 21394 NM_001256550 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 179.25-30 chr14 37622799 37623235 + 0.75 NA intron (NM_001310135, intron 3 of 32) intron (NM_001310135, intron 3 of 32) 27388 NM_001310135 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 152.5-93 chr5 149933271 149933566 + 0.75 NA promoter-TSS (NR_110534) promoter-TSS (NR_110534) -441 NR_110534 644762 Hs.730366 NR_110534 LOC644762 - mitochondrial fission factor pseudogene pseudo 151.75-114 chr9 15918804 15919282 + 0.75 NA intron (NM_001355547, intron 23 of 24) L2c|LINE|L2 334064 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 234.25-6 chr19 33648293 33648854 + 0.75 NA intron (NM_001127896, intron 1 of 3) AluSx|SINE|Alu 26620 NM_001127896 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 212.25-21 chr18 21314847 21315318 + 0.75 NA intron (NM_001142966, intron 1 of 32) AluJb|SINE|Alu 72840 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 230.25-7 chr10 121520492 121520850 + 0.75 NA intron (NR_073009, intron 4 of 16) AluJb|SINE|Alu 10643 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 161.25-61 chr5 162338666 162338982 + 0.75 NA Intergenic Intergenic 271182 NM_000816 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 154.25 chr1 24227835 24228255 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger 27805 NR_027087 284632 Hs.638906 NR_027087 ENSG00000230023 LINC02800 - long intergenic non-protein coding RNA 2800 ncRNA 157.75-30 chr13 81994916 81995182 + 0.75 NA Intergenic Intergenic -768066 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 272-6 chr14 60956135 60956837 + 0.75 NA intron (NM_001177963, intron 6 of 6) L1M1|LINE|L1 24593 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 176.25-53 chr5 126098944 126099190 + 0.75 NA Intergenic Intergenic -80510 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 156-60 chr3 194397533 194397881 + 0.75 NA exon (NM_004488, exon 2 of 2) exon (NM_004488, exon 2 of 2) 1559 NM_004488 2814 Hs.73734 NM_004488 ENSG00000178732 GP5 CD42d|GPV glycoprotein V platelet protein-coding 155.5-16 chr11 78221680 78222061 + 0.75 NA intron (NM_012296, intron 7 of 9) intron (NM_012296, intron 7 of 9) 32951 NM_020798 57558 Hs.531249 NM_020798 ENSG00000118369 USP35 - ubiquitin specific peptidase 35 protein-coding 156-25 chr14 82575350 82575588 + 0.75 NA Intergenic Charlie5|DNA|hAT-Charlie -67163 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 229.5-25 chr3 111435336 111435969 + 0.75 NA Intergenic Intergenic -106545 NM_005816 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 202.5-10 chr11 90936028 90936343 + 0.75 NA Intergenic Intergenic -66983 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 180-51 chr5 40239138 40239496 + 0.75 NA Intergenic L1ME1|LINE|L1 187026 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 239.75-9 chr12 117186242 117186828 + 0.75 NA exon (NM_033624, exon 3 of 12) exon (NM_033624, exon 3 of 12) 3935 NM_033624 23014 Hs.740376 NM_015002 ENSG00000135108 FBXO21 FBX21 F-box protein 21 protein-coding 220.25-19 chr19 30843167 30843508 + 0.75 NA Intergenic Intergenic -324173 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 235.5-37 chr8 58209680 58210271 + 0.75 NA Intergenic L1PA15|LINE|L1 62126 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 190.25-29 chr3 170344444 170344954 + 0.75 NA Intergenic Intergenic -13016 NM_001145098 6498 Hs.536655 NM_005414 ENSG00000136603 SKIL SNO|SnoA|SnoI|SnoN SKI like proto-oncogene protein-coding 186.5-30 chr2 181055684 181056025 + 0.75 NA intron (NM_001278555, intron 3 of 5) intron (NM_001278555, intron 3 of 5) -67983 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 245-21 chr7 23833218 23833823 + 0.75 NA Intergenic THE1B-int|LTR|ERVL-MaLR 123301 NM_001260505 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 203.75-51 chr8 126906788 126907209 + 0.75 NA Intergenic Intergenic -106156 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 158.25-72 chr4 36019284 36019683 + 0.75 NA intron (NR_146893, intron 35 of 36) intron (NR_146893, intron 35 of 36) 224456 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 186-26 chr2 216341247 216341579 + 0.75 NA intron (NM_020814, intron 1 of 3) intron (NM_020814, intron 1 of 3) 31070 NM_020814 57574 Hs.170388 NM_020814 ENSG00000144583 MARCH4 MARCH-IV|RNF174 membrane associated ring-CH-type finger 4 protein-coding 174.5-53 chr3 133864250 133864728 + 0.75 NA intron (NM_001363953, intron 3 of 8) intron (NM_001363953, intron 3 of 8) 31358 NM_001363953 51560 Hs.715344 NM_016577 ENSG00000154917 RAB6B - RAB6B, member RAS oncogene family protein-coding 245.5-35 chr7 85673049 85673660 + 0.75 NA Intergenic Intergenic 252232 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 278.75-8 chr3 15434491 15435142 + 0.75 NA intron (NM_033083, intron 4 of 5) intron (NM_033083, intron 4 of 5) 7218 NM_033083 85403 Hs.716733 NM_033083 ENSG00000144597 EAF1 - ELL associated factor 1 protein-coding 212.5-13 chr14 88692518 88692999 + 0.75 NA intron (NM_183387, intron 17 of 42) intron (NM_183387, intron 17 of 42) 98338 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 158.25-58 chr20 46550924 46551299 + 0.75 NA promoter-TSS (NM_080721) promoter-TSS (NM_080721) -457 NM_080721 128506 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 181.5-33 chr2 13043682 13044083 + 0.75 NA Intergenic L1PA8A|LINE|L1 -36869 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 207.25-7 chr10 22378806 22379322 + 0.75 NA intron (NM_172242, intron 4 of 9) intron (NM_172242, intron 4 of 9) 33568 NM_172242 9576 Hs.655170 NM_012443 ENSG00000077327 SPAG6 CT141|Repro-SA-1|pf16 sperm associated antigen 6 protein-coding 224.5-23 chr4 59654000 59654524 + 0.75 NA Intergenic Intergenic 640689 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 180.25-9 chr10 43747056 43747332 + 0.75 NA Intergenic Intergenic 31631 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 189.75-11 chr1 118828859 118829429 + 0.75 NA Intergenic Intergenic 159199 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 158.75-75 chr7 54376633 54377081 + 0.75 NA Intergenic Intergenic 46160 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 155.5-37 chr16 54903555 54903997 + 0.75 NA Intergenic L1MC1|LINE|L1 25002 NR_034106 643911 Hs.237396 NM_001308963 CRNDE CRNDEP|LINC00180|NCRNA00180|PNAS-108|lincIRX5 colorectal neoplasia differentially expressed protein-coding 226.75-21 chr3 143161951 143162550 + 0.75 NA Intergenic Intergenic 42479 NM_004267 9435 Hs.8786 NM_004267 ENSG00000175040 CHST2 C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1 carbohydrate sulfotransferase 2 protein-coding 212.25-33 chr5 50716331 50716781 + 0.75 NA intron (NM_024615, intron 2 of 25) LTR54B|LTR|ERV1 49142 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 226-3 chr10 72161625 72162102 + 0.75 NA intron (NM_001369110, intron 5 of 8) L1MB5|LINE|L1 54093 NM_001369091 51008 Hs.500007 NM_015947 ENSG00000138303 ASCC1 ASC1p50|CGI-18|SMABF2|p50 activating signal cointegrator 1 complex subunit 1 protein-coding 217.25-9 chr10 20034375 20034729 + 0.75 NA intron (NM_001282736, intron 2 of 12) intron (NM_001282736, intron 2 of 12) 218120 NM_032812 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 222.25-21 chr2 185403486 185404030 + 0.75 NA Intergenic Intergenic -236686 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 153.75-8 chr11 74780058 74780305 + 0.75 NA intron (NM_001098638, intron 1 of 5) intron (NM_001098638, intron 1 of 5) 31332 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 274.5-15 chr5 115269658 115270412 + 0.75 NA intron (NM_001040440, intron 7 of 9) L1M8|LINE|L1 -7158 NM_005023 5229 Hs.254006 NM_005023 ENSG00000164219 PGGT1B BGGI|GGTI protein geranylgeranyltransferase type I subunit beta protein-coding 187-46 chr5 105786397 105786835 + 0.75 NA Intergenic MIR|SINE|MIR 687142 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 210-12 chr14 70273581 70274185 + 0.75 NA Intergenic MER58A|DNA|hAT-Charlie -26082 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 146.75-107 chr7 84813348 84813587 + 0.75 NA Intergenic Intergenic 280991 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 146-77 chr6 42501668 42502052 + 0.75 NA Intergenic HAL1ME|LINE|L1 -49636 NM_033502 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 348.75-4 chr16 63269683 63270375 + 0.75 NA Intergenic Intergenic -1233591 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 185.25-11 chr12 21487232 21487582 + 0.75 NA intron (NM_002907, intron 4 of 14) intron (NM_002907, intron 4 of 14) 14228 NM_002907 5965 Hs.235069 NM_002907 ENSG00000004700 RECQL RECQL1|RecQ1 RecQ like helicase protein-coding 232.5-52 chr8 133777099 133777527 + 0.75 NA promoter-TSS (NR_125422) promoter-TSS (NR_125422) 39 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 188.75-21 chr15 87905021 87905501 + 0.75 NA intron (NM_001012338, intron 17 of 19) intron (NM_001012338, intron 17 of 19) 41007 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 183-58 chr8 138584741 138585092 + 0.75 NA Intergenic Intergenic -87186 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 191.5-18 chr13 45603064 45603325 + 0.75 NA intron (NM_182542, intron 2 of 14) MLT2B2|LTR|ERVL 12545 NM_182542 220081 Hs.668747 NM_182542 ENSG00000165837 ERICH6B FAM194B glutamate rich 6B protein-coding 249-8 chr21 24704097 24704648 + 0.75 NA Intergenic Intergenic -136178 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 249.75-12 chr3 98354561 98355097 + 0.75 NA TTS (NM_001005517) TTS (NM_001005517) 975 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 204.5-28 chr4 94073417 94073885 + 0.75 NA Intergenic Intergenic 133905 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 198.25-32 chr3 103717060 103717460 + 0.75 NA Intergenic L1MA9|LINE|L1 -193144 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 297.75-4 chr15 40100721 40101242 + 0.75 NA intron (NM_001003943, intron 3 of 3) intron (NM_001003943, intron 3 of 3) 5105 NM_001003942 90427 Hs.591104 NM_033503 ENSG00000104081 BMF - Bcl2 modifying factor protein-coding 318.5-7 chr4 93358315 93358863 + 0.75 NA intron (NM_001286838, intron 7 of 14) intron (NM_001286838, intron 7 of 14) -470164 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 281.5 chr1 40255530 40256049 + 0.75 NA Intergenic L2a|LINE|L2 -2447 NM_005857 10269 Hs.132642 NM_005857 ENSG00000084073 ZMPSTE24 FACE-1|FACE1|HGPS|PRO1|STE24|Ste24p zinc metallopeptidase STE24 protein-coding 156.5-102 chr7 20880613 20880917 + 0.75 NA intron (NR_126381, intron 1 of 5) intron (NR_126381, intron 1 of 5) 45334 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 386 chr4 189077981 189079277 + 0.75 NA Intergenic L1MB7|LINE|L1 301972 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 168-68 chr8 136497186 136497589 + 0.75 NA Intergenic Intergenic -33411 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 230.75-43 chr8 106992170 106992658 + 0.75 NA Intergenic Intergenic -222170 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 308-2 chr10 10749185 10749720 + 0.75 NA intron (NM_001326317, intron 2 of 14) intron (NM_001326317, intron 2 of 14) 45462 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 198-10 chr14 87170550 87170895 + 0.75 NA Intergenic L2a|LINE|L2 264944 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 250.5-30 chr9 71467113 71467544 + 0.75 NA Intergenic L1MD2|LINE|L1 -20357 NM_001366143 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 158-8 chr10 89488598 89488973 + 0.75 NA intron (NM_213606, intron 2 of 7) intron (NM_213606, intron 2 of 7) 32794 NR_120614 101926906 Hs.568874 NR_120614 ENSG00000234452 SLC16A12-AS1 - SLC16A12 antisense RNA 1 ncRNA 147.25-8 chr1 118892202 118892535 + 0.75 NA intron (NM_152380, intron 7 of 7) intron (NM_152380, intron 7 of 7) 95975 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 172-79 chr7 16883577 16883838 + 0.75 NA Intergenic Intergenic -1724 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 300.25-7 chr2 154243607 154244177 + 0.75 NA intron (NM_052917, intron 6 of 12) intron (NM_052917, intron 6 of 12) 213546 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 152.75-5 chr1 73031398 73031859 + 0.75 NA Intergenic Intergenic -274542 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 151.25-52 chr20 42637734 42637958 + 0.75 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -47637 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 189-12 chr11 97799702 97800216 + 0.75 NA Intergenic Intergenic -1220990 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 149.25-109 chr8 72922303 72922631 + 0.75 NA intron (NM_004770, intron 2 of 2) MLT1A0|LTR|ERVL-MaLR -86397 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 167.25-76 chr8 59469115 59469551 + 0.75 NA Intergenic Intergenic 350123 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 265.25-14 chr6 116722610 116723188 + 0.75 NA 3' UTR (NM_001366309, exon 10 of 10) 3' UTR (NM_001366309, exon 10 of 10) 41688 NM_001366310 3841 Hs.182971 NM_002269 ENSG00000196911 KPNA5 IPOA6|SRP6 karyopherin subunit alpha 5 protein-coding 154.75-39 chr2 43932369 43932820 + 0.75 NA intron (NM_133259, intron 25 of 37) intron (NM_133259, intron 25 of 37) 63395 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 183.25-17 chr13 71754587 71755040 + 0.75 NA intron (NM_080759, intron 1 of 10) intron (NM_080759, intron 1 of 10) 112379 NM_080760 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 210-26 chr2 88563024 88563482 + 0.75 NA intron (NM_004836, intron 14 of 16) intron (NM_004836, intron 14 of 16) 24533 NR_110236 101928371 Hs.738045 NR_110236 ENSG00000225420 LOC101928371 - uncharacterized LOC101928371 ncRNA 258-3 chr1 159997579 159998042 + 0.75 NA Intergenic L1MEi|LINE|L1 34180 NM_145167 93183 Hs.552810 NM_145167 ENSG00000143315 PIGM GPI-MT-I phosphatidylinositol glycan anchor biosynthesis class M protein-coding 222.25-41 chr7 3612990 3613387 + 0.75 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 311936 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 156.25-77 chr5 153189153 153189495 + 0.75 NA Intergenic Intergenic -216975 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 350.5-2 chr13 73982393 73983192 + 0.75 NA intron (NM_007249, intron 2 of 7) intron (NM_007249, intron 2 of 7) 151137 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 282.75-11 chr6 43727805 43728250 + 0.75 NA Intergenic AluJb|SINE|Alu -40215 NM_001193343 55168 Hs.520149 NM_018135 ENSG00000096080 MRPS18A HumanS18b|MRP-S18-3|MRP-S18-a|MRPS18-3|S18bmt|S18mt-a mitochondrial ribosomal protein S18A protein-coding 320.5-4 chr12 118922950 118923498 + 0.75 NA Intergenic Intergenic -58317 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 146.75-115 chr8 47296971 47297251 + 0.75 NA intron (NR_104581, intron 5 of 16) L1MA7|LINE|L1 36173 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 152.75-31 chr14 73596902 73597356 + 0.75 NA Intergenic AluY|SINE|Alu 5423 NM_152331 122970 Hs.49433 NM_152331 ENSG00000177465 ACOT4 PTE-Ib|PTE1B|PTE2B acyl-CoA thioesterase 4 protein-coding 165.25-32 chr21 22575109 22575432 + 0.75 NA Intergenic Intergenic 476653 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 225.5-47 chr6 162121495 162122016 + 0.75 NA intron (NM_004562, intron 4 of 11) ERVL-E-int|LTR|ERVL -605377 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 266.75-17 chr5 57715210 57716000 + 0.75 NA Intergenic L1MC4a|LINE|L1 64945 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 288.75-4 chr11 22902571 22903246 + 0.75 NA Intergenic Intergenic -42434 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 235-18 chr6 131725399 131725837 + 0.75 NA intron (NR_133007, intron 19 of 23) intron (NR_133007, intron 19 of 23) -14601 NM_001145659 643854 Hs.632613 NM_001145659 ENSG00000236761 CTAGE9 - CTAGE family member 9 protein-coding 169.5-23 chr11 96564657 96564907 + 0.75 NA Intergenic (ATATATA)n|Simple_repeat|Simple_repeat 56357 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 173-14 chr10 96683493 96683887 + 0.75 NA intron (NM_152309, intron 2 of 16) intron (NM_152309, intron 2 of 16) 36824 NM_152309 118788 Hs.310456 NM_152309 ENSG00000155629 PIK3AP1 BCAP phosphoinositide-3-kinase adaptor protein 1 protein-coding 156-71 chr4 180107524 180107802 + 0.75 NA Intergenic Intergenic 1051486 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 212.5 chr1 196418684 196419125 + 0.75 NA intron (NM_001287820, intron 12 of 26) HAL1|LINE|L1 163577 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 167.5-68 chr4 134561090 134561361 + 0.75 NA Intergenic Intergenic 137357 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 183-66 chrX 145615961 145616303 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR -201697 NM_001144004 84631 Hs.106688 NM_032539 ENSG00000185985 SLITRK2 CXorf1|CXorf2|SLITL1|TMEM257 SLIT and NTRK like family member 2 protein-coding 204.5-8 chr10 69561492 69562027 + 0.75 NA Intergenic Intergenic 11663 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 267.5-22 chr7 17335569 17336128 + 0.75 NA intron (NM_001621, intron 9 of 10) intron (NM_001621, intron 9 of 10) 37196 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 255.5-21 chr4 3020484 3020881 + 0.75 NA intron (NM_001004056, intron 8 of 14) intron (NM_001004056, intron 8 of 14) 53832 NR_045414 100750326 Hs.575112 NR_045414 HTT-AS HTT-AS1|HTTAS HTT antisense RNA ncRNA 237.75-26 chr9 92509588 92510036 + 0.75 NA intron (NM_001197296, intron 6 of 9) intron (NM_001197296, intron 6 of 9) 18246 NR_039817 100616351 NR_039817 ENSG00000264158 MIR4670 - microRNA 4670 ncRNA 183.5-48 chr3 194855224 194855627 + 0.75 NA Intergenic L2c|LINE|L2 -86716 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 332.5 chr1 68942902 68943412 + 0.75 NA Intergenic MLT1F2|LTR|ERVL-MaLR -112741 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 247-9 chr14 38438761 38439474 + 0.75 NA Intergenic (CCTTTC)n|Simple_repeat|Simple_repeat -183024 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 219-20 chr5 52773309 52773919 + 0.75 NA Intergenic Intergenic -14302 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 152-49 chr3 8093422 8093806 + 0.75 NA Intergenic Intergenic -77307 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 277.5-17 chr6 22985999 22986523 + 0.75 NA Intergenic L1MDa|LINE|L1 -268337 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 254-4 chr16 54736364 54736829 + 0.75 NA Intergenic Intergenic 111637 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 291-5 chr2 44862631 44863191 + 0.75 NA Intergenic L1MC1|LINE|L1 75977 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 219.5-10 chr15 27378459 27379007 + 0.75 NA intron (NM_001270873, intron 5 of 5) intron (NM_001270873, intron 5 of 5) -217414 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 464.25 chr9 103450309 103451087 + 0.75 NA Intergenic Intergenic -125665 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 205-22 chr2 10578853 10579339 + 0.75 NA intron (NR_048552, intron 18 of 19) intron (NR_048552, intron 18 of 19) 110879 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 251.5-31 chr8 110482585 110483060 + 0.75 NA Intergenic Tigger3a|DNA|TcMar-Tigger -507051 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 150.75-102 chrX 8451232 8451504 + 0.75 NA Intergenic Intergenic -13462 NM_001001888 425054 Hs.279737 NM_001001888 ENSG00000205642 VCX3B VCX-C|VCXC variable charge X-linked 3B protein-coding 225.25-6 chr10 23608286 23608637 + 0.75 NA Intergenic Intergenic -86266 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 159-27 chr17 46927136 46927393 + 0.75 NA intron (NM_001363851, intron 1 of 5) L1ME3Cz|LINE|L1 4104 NR_148349 9570 Hs.463278 NM_004287 ENSG00000108433 GOSR2 Bos1|EPM6|GS27 golgi SNAP receptor complex member 2 protein-coding 260.5-13 chr6 45010002 45010475 + 0.75 NA intron (NM_001261823, intron 4 of 9) L1MB8|LINE|L1 187532 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 210-17 chr17 68047317 68047802 + 0.75 NA TTS (NM_002266) TTS (NM_002266) 11599 NM_001320611 3838 Hs.594238 NM_002266 ENSG00000182481 KPNA2 IPOA1|QIP2|RCH1|SRP1-alpha|SRP1alpha karyopherin subunit alpha 2 protein-coding 236-17 chr18 63295960 63296350 + 0.75 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 23225 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 150.25-30 chr14 25598599 25598843 + 0.75 NA Intergenic Intergenic -548424 NM_001351941 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 293-9 chr6 89773911 89774397 + 0.75 NA intron (NM_014611, intron 13 of 101) MLT1C|LTR|ERVL-MaLR 45640 NM_014611 23195 Hs.529948 NM_014611 ENSG00000112159 MDN1 Rea1 midasin AAA ATPase 1 protein-coding 181-55 chr8 132137253 132137628 + 0.75 NA intron (NM_001204824, intron 12 of 14) intron (NM_001204824, intron 12 of 14) -32175 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 243.25-17 chr3 31471840 31472269 + 0.75 NA Intergenic L2a|LINE|L2 -60871 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 149.75-49 chr21 7920869 7921176 + 0.75 NA Intergenic (ATTCCATTCC)n|Simple_repeat|Simple_repeat -91390 NM_001369869 102723475 NM_001330065 ENSG00000276289 KCNE1B - potassium voltage-gated channel subfamily E regulatory subunit 1B protein-coding 160-55 chr3 182019006 182019334 + 0.75 NA Intergenic AluJb|SINE|Alu 66806 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 184.75-23 chr14 26478487 26478848 + 0.75 NA intron (NM_001366391, intron 4 of 5) intron (NM_001366391, intron 4 of 5) 74763 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 236.5-34 chr7 40067251 40067567 + 0.75 NA intron (NM_003718, intron 9 of 13) AluSz6|SINE|Alu 67213 NM_138701 136647 Hs.654989 NM_138701 ENSG00000168303 MPLKIP ABHS|C7orf11|ORF20|TTD4 M-phase specific PLK1 interacting protein protein-coding 227-7 chr2 13296451 13296974 + 0.75 NA Intergenic Intergenic -289699 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 181.25-49 chr5 102926414 102926833 + 0.75 NA exon (NM_001364593, exon 7 of 24) exon (NM_001364593, exon 7 of 24) 60800 NM_000919 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 163.5-81 chr4 30595350 30595725 + 0.75 NA Intergenic L1MEg|LINE|L1 -124832 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 233.25-37 chrX 83937354 83937997 + 0.75 NA Intergenic L1PB4|LINE|L1 76529 NM_021118 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 169.25-17 chr16 22669384 22669794 + 0.75 NA Intergenic MIR|SINE|MIR 123891 NR_003676 653786 Hs.564945 NR_003676 ENSG00000257838 OTOAP1 - OTOA pseudogene 1 pseudo 231.25-40 chrX 37961251 37961663 + 0.75 NA Intergenic Intergenic -29322 NM_012274 25763 Hs.122959 NM_012274 ENSG00000187516 HYPM CXorf27|HIP17 huntingtin interacting protein M protein-coding 189.75-7 chr1 95637452 95637805 + 0.75 NA Intergenic Intergenic 127512 NR_110622 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 155.25-58 chr3 145716066 145716334 + 0.75 NA Intergenic MLT1G1|LTR|ERVL-MaLR 352985 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 229-20 chr6 20721445 20722091 + 0.75 NA intron (NM_017774, intron 5 of 15) AluSg|SINE|Alu 187311 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 230-14 chr2 69353830 69354270 + 0.75 NA intron (NM_002056, intron 8 of 18) intron (NM_002056, intron 8 of 18) 33177 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 175 chr1 44049866 44050156 + 0.75 NA Intergenic L1ME3A|LINE|L1 -18549 NM_001328630 6536 Hs.442590 NM_006934 ENSG00000196517 SLC6A9 GCENSG|GLYT1 solute carrier family 6 member 9 protein-coding 158-53 chr4 41535748 41536154 + 0.75 NA intron (NM_001289122, intron 3 of 25) intron (NM_001289122, intron 3 of 25) -2206 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 183-18 chr14 86604998 86605347 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -300606 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 231.5-38 chr8 124036208 124036698 + 0.75 NA intron (NM_001039112, intron 19 of 40) MIRb|SINE|MIR 4329 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 212.25-5 chr1 224329954 224330352 + 0.75 NA promoter-TSS (NM_001243146) promoter-TSS (NM_001243146) 19 NM_002533 4931 Hs.497867 NM_002533 ENSG00000143748 NVL NVL2 nuclear VCP like protein-coding 152.25-71 chr4 72072467 72072699 + 0.75 NA intron (NM_001144756, intron 2 of 4) L1M4c|LINE|L1 33451 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 205.75-57 chrX 51574849 51575379 + 0.75 NA Intergenic Intergenic 43804 NM_001355276 347549 NM_001355276 ENSG00000224109 CENPVL3 CENPVP3 centromere protein V like 3 protein-coding 193.5-47 chr3 160994837 160995172 + 0.75 NA intron (NM_001317912, intron 3 of 4) intron (NM_001317912, intron 3 of 4) 109728 NM_001349161 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 270.75-25 chr7 33184799 33185518 + 0.75 NA intron (NM_198428, intron 5 of 22) MER41B|LTR|ERV1 55594 NM_001348040 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 216-27 chr5 4695587 4696003 + 0.75 NA Intergenic Intergenic -77686 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 233.75-5 chr12 24457538 24457955 + 0.75 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 104745 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 163.5-74 chr3 98970296 98970602 + 0.75 NA Intergenic (TCCCT)n|Simple_repeat|Simple_repeat -68754 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 209.25-37 chr4 76141348 76141813 + 0.75 NA intron (NM_001278603, intron 2 of 10) L2c|LINE|L2 6817 NM_017426 53371 Hs.430435 NM_017426 ENSG00000138750 NUP54 - nucleoporin 54 protein-coding 221.5-29 chr2 230233554 230234028 + 0.75 NA intron (NM_001278453, intron 1 of 23) Charlie1b|DNA|hAT-Charlie 8055 NM_001005176 11262 Hs.632549 NM_007237 ENSG00000079263 SP140 LYSP100|LYSP100-A|LYSP100-B SP140 nuclear body protein protein-coding 300.5-6 chr14 58904665 58905507 + 0.75 NA intron (NR_110547, intron 2 of 5) intron (NR_110547, intron 2 of 5) 76798 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 202.5 chr1 18280217 18280557 + 0.75 NA intron (NM_032880, intron 2 of 9) L2|LINE|L2 172589 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 267-7 chr4 47858546 47859067 + 0.75 NA intron (NR_103795, intron 20 of 23) L1ME3C|LINE|L1 -20700 NM_001278585 10699 Hs.518618 NM_006587 ENSG00000145244 CORIN ATC2|CRN|Lrp4|PEE5|TMPRSS10 corin, serine peptidase protein-coding 285.5-15 chr6 61781339 61781810 + 0.75 NA intron (NR_146874, intron 6 of 13) intron (NR_146874, intron 6 of 13) 207444 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 164.75-48 chr20 15308102 15308412 + 0.75 NA intron (NM_001351663, intron 6 of 17) L1MC4|LINE|L1 111417 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 185.75-60 chr5 26908937 26909250 + 0.75 NA intron (NM_016279, intron 3 of 11) AluY|SINE|Alu 129493 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 153.75-105 chrX 141810547 141810864 + 0.75 NA Intergenic L1MA1|LINE|L1 -27611 NM_138702 139081 Hs.356870 NM_138702 ENSG00000165509 MAGEC3 CT7.2|HCA2|MAGE-C3|MAGEC4 MAGE family member C3 protein-coding 161-89 chr8 125174693 125175031 + 0.75 NA intron (NR_146191, intron 5 of 8) MER130|DNA|DNA 83002 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 148.75-47 chr2 79685231 79685491 + 0.75 NA intron (NM_001282598, intron 2 of 17) intron (NM_001282598, intron 2 of 17) -36002 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 244-7 chr14 63199690 63200083 + 0.75 NA Intergenic Intergenic -4557 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 155.5-105 chr8 99115550 99115903 + 0.75 NA exon (NM_152564, exon 7 of 62) exon (NM_152564, exon 7 of 62) 102460 NM_015243 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 268.25-11 chr2 75478734 75479296 + 0.75 NA Intergenic Intergenic -45053 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 215.5-16 chr14 82669690 82670271 + 0.75 NA intron (NR_146650, intron 2 of 5) intron (NR_146650, intron 2 of 5) 27348 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 335 chr11 128822793 128823797 + 0.75 NA Intergenic Intergenic 19174 NM_000220 3758 Hs.527830 NM_000220 ENSG00000151704 KCNJ1 KIR1.1|ROMK|ROMK1 potassium voltage-gated channel subfamily J member 1 protein-coding 199.25-33 chr2 64698773 64699177 + 0.75 NA Intergenic Intergenic -45062 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 451.5 chr7 130466262 130467479 + 0.75 NA Intergenic AluJb|SINE|Alu -19305 NM_177524 4232 Hs.270978 NM_002402 ENSG00000106484 MEST PEG1 mesoderm specific transcript protein-coding 172.75-49 chr4 172191657 172192186 + 0.75 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -378314 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 171.5-29 chr14 51450197 51450630 + 0.75 NA Intergenic Intergenic -38715 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 148.25-19 chr12 1418160 1418561 + 0.75 NA intron (NR_027948, intron 18 of 19) MER21A|LTR|ERVL -82131 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 294.75-2 chr12 13846350 13847057 + 0.75 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 133653 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 227.75-22 chr20 55753710 55754084 + 0.75 NA Intergenic L1ME5|LINE|L1 251622 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 207.25-48 chr5 153077330 153077660 + 0.75 NA Intergenic Intergenic -105146 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 178.75-54 chr5 62646514 62646951 + 0.75 NA Intergenic Intergenic 67913 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 150.5-67 chr2 208570405 208570783 + 0.75 NA intron (NR_136588, intron 1 of 5) intron (NR_136588, intron 1 of 5) 27952 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 225.75-32 chr8 52826533 52827058 + 0.75 NA Intergenic L2|LINE|L2 -112329 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 203-14 chr15 61936803 61937171 + 0.75 NA intron (NM_001018088, intron 47 of 81) intron (NM_001018088, intron 47 of 81) 123460 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 215.75-34 chr6 162891142 162891481 + 0.75 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 162850 NR_110871 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 180.25-55 chr5 45176059 45176453 + 0.75 NA Intergenic L1MA8|LINE|L1 367309 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 189.5-61 chr7 9241535 9241992 + 0.75 NA Intergenic Intergenic -392507 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 197.75-54 chr5 61473442 61473749 + 0.75 NA intron (NM_020928, intron 2 of 13) intron (NM_020928, intron 2 of 13) 141337 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 152.5-72 chr3 125463569 125463896 + 0.75 NA intron (NM_003794, intron 9 of 13) L1MA9|LINE|L1 56470 NM_003794 8723 Hs.507243 NM_003794 ENSG00000114520 SNX4 ATG24B sorting nexin 4 protein-coding 148.5-76 chr5 23220365 23220669 + 0.75 NA Intergenic LTR40a|LTR|ERVL -287092 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 151.5-89 chr7 33446538 33446817 + 0.75 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 317113 NM_001348040 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 241-31 chr9 108457372 108457930 + 0.75 NA Intergenic Charlie15a|DNA|hAT-Charlie 398335 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 258-6 chr12 65689803 65690531 + 0.75 NA Intergenic Intergenic -47795 NR_120431 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 163.75-11 chr10 84361844 84362229 + 0.75 NA intron (NM_018999, intron 1 of 10) intron (NM_018999, intron 1 of 10) 33447 NM_018999 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 231.25-27 chr3 94661988 94662451 + 0.75 NA Intergenic Intergenic -276044 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 176-38 chr20 16373413 16373873 + 0.75 NA intron (NM_001199865, intron 19 of 24) intron (NM_001199865, intron 19 of 24) 199805 NM_001199866 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 159.75-27 chr12 87054010 87054283 + 0.75 NA Intergenic L1MCa|LINE|L1 -215146 NM_001351285 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 197.25-3 chr1 87092959 87093328 + 0.75 NA intron (NM_012262, intron 4 of 6) L2c|LINE|L2 -36622 NR_026988 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 164.75-55 chr3 117520992 117521332 + 0.75 NA Intergenic AluSc|SINE|Alu 169763 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 254.75-24 chr8 56607072 56607850 + 0.75 NA Intergenic MER4B|LTR|ERV1 -47638 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 196.25-8 chr12 25849520 25850097 + 0.75 NA Intergenic MIR|SINE|MIR 24271 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 147-104 chr7 54570902 54571235 + 0.75 NA TTS (NR_133927) TTS (NR_133927) 14098 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 147-106 chr8 9559321 9559557 + 0.75 NA intron (NM_003747, intron 1 of 26) intron (NM_003747, intron 1 of 26) 3527 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 270.75-4 chr1 239777384 239777888 + 0.75 NA intron (NM_000740, intron 3 of 4) intron (NM_000740, intron 3 of 4) -58517 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 225.75-9 chr13 66757398 66757943 + 0.75 NA intron (NM_020403, intron 2 of 3) intron (NM_020403, intron 2 of 3) -67499 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 159.75-32 chr14 44536653 44537106 + 0.75 NA intron (NR_135257, intron 2 of 2) intron (NR_135257, intron 2 of 2) 29470 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 308.25-3 chr22 29533787 29534282 + 0.75 NA intron (NM_001002879, intron 7 of 19) L1ME3|LINE|L1 19621 NM_001002879 8563 Hs.75361 NM_003678 ENSG00000100296 THOC5 C22orf19|Fmip|PK1.3|fSAP79 THO complex 5 protein-coding 171.25-16 chr12 86217578 86218104 + 0.75 NA intron (NM_001351286, intron 4 of 7) MER57A-int|LTR|ERV1 38550 NM_001351284 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 204.25-37 chr4 76348866 76349313 + 0.75 NA intron (NM_001042784, intron 17 of 23) L1MEg|LINE|L1 43063 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 165-66 chr5 23366572 23366907 + 0.75 NA Intergenic MIRc|SINE|MIR -140870 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 289.25-24 chr9 30608580 30609194 + 0.75 NA Intergenic Intergenic -200433 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 183.75-10 chr1 238726073 238726447 + 0.75 NA Intergenic L1MEg|LINE|L1 -240243 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 150-40 chr2 96498638 96499048 + 0.75 NA intron (NM_001285485, intron 3 of 3) AluJb|SINE|Alu 6514 NM_001285485 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 174.25-68 chr8 75414721 75415257 + 0.75 NA intron (NM_001330561, intron 1 of 11) L1ME1|LINE|L1 7340 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 209-17 chr16 63827698 63828191 + 0.75 NA Intergenic HERV35I-int|LTR|ERV1 1294119 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 426.75 chr19 13543692 13544359 + 0.75 NA Intergenic L1MA2|LINE|L1 -37546 NM_023035 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 155.25-62 chr4 40563439 40563750 + 0.75 NA intron (NM_001371114, intron 1 of 5) intron (NM_001371114, intron 1 of 5) -47609 NM_019027 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 306-3 chr11 38624407 38624874 + 0.75 NA intron (NR_120554, intron 3 of 4) intron (NR_120554, intron 3 of 4) 21716 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 186-5 chr11 15745393 15745780 + 0.75 NA Intergenic MER94|DNA|hAT-Blackjack 101701 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 230.75-32 chr5 3752534 3753247 + 0.75 NA Intergenic Intergenic 157058 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 232.5-42 chr5 63133413 63133839 + 0.75 NA Intergenic Intergenic 554807 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 181.75-18 chr12 45798695 45799055 + 0.75 NA intron (NM_152641, intron 3 of 20) intron (NM_152641, intron 3 of 20) 69166 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 154.75-88 chr5 165993176 165993443 + 0.75 NA Intergenic Intergenic 933061 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 208.5-36 chr2 209895291 209895699 + 0.75 NA intron (NM_032504, intron 26 of 63) intron (NM_032504, intron 26 of 63) -107070 NM_006916 6120 Hs.282260 NM_006916 ENSG00000197713 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 154.25-28 chr13 76422268 76422603 + 0.75 NA Intergenic Intergenic 463970 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 159.75-26 chr12 49531289 49531730 + 0.75 NA Intergenic Intergenic -7521 NM_012284 23416 Hs.64064 NM_012284 ENSG00000135519 KCNH3 BEC1|ELK2|Kv12.2 potassium voltage-gated channel subfamily H member 3 protein-coding 227-19 chr8 126531088 126531718 + 0.75 NA Intergenic MIR|SINE|MIR 27075 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 287.25-9 chr4 95216065 95216685 + 0.75 NA intron (NM_003728, intron 9 of 15) intron (NM_003728, intron 9 of 15) 124884 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 209.5-28 chr2 57649145 57649664 + 0.75 NA Intergenic L1MB8|LINE|L1 -258247 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 241.75-24 chr7 145042134 145042611 + 0.75 NA Intergenic L4_A_Mam|LINE|RTE-X -206319 NM_022445 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 216.75-24 chr4 61676571 61677055 + 0.75 NA intron (NM_001371343, intron 5 of 23) intron (NM_001371343, intron 5 of 23) 474641 NM_001371342 190.25-40 chr5 148993686 148994190 + 0.75 NA 3' UTR (NM_024577, exon 17 of 17) 3' UTR (NM_024577, exon 17 of 17) 68471 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 273.75-11 chr8 117301713 117302248 + 0.75 NA Intergenic Intergenic 166985 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 157.25-115 chrX 121851019 121851306 + 0.75 NA Intergenic L1MC2|LINE|L1 480190 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 205.75-43 chr4 30657605 30658071 + 0.75 NA Intergenic L2a|LINE|L2 -62531 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 195.75-40 chr2 192342784 192343134 + 0.75 NA Intergenic L1MC1|LINE|L1 -148026 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 214.5-8 chr13 87874488 87874930 + 0.75 NA Intergenic Intergenic -64189 NR_104059 101930749 Hs.539610 NR_104059 ENSG00000223404 LINC00397 - long intergenic non-protein coding RNA 397 ncRNA 184.75-4 chr1 67939889 67940453 + 0.75 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) -106704 NM_018841 55970 Hs.431101 NM_018841 ENSG00000172380 GNG12 - G protein subunit gamma 12 protein-coding 172.75-56 chr5 165843624 165844072 + 0.75 NA Intergenic Intergenic 1082522 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 235.25-13 chr2 81934600 81935228 + 0.75 NA Intergenic Intergenic -467968 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 185-43 chr3 37098714 37099221 + 0.75 NA intron (NM_017724, intron 4 of 13) intron (NM_017724, intron 4 of 13) 75615 NM_006309 9209 Hs.740522 NM_006309 ENSG00000093167 LRRFIP2 HUFI-2 LRR binding FLII interacting protein 2 protein-coding 163.25-22 chr12 15803745 15804025 + 0.75 NA Intergenic Intergenic -14497 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 177.75-26 chr18 12550930 12551319 + 0.75 NA intron (NM_020148, intron 2 of 15) L2a|LINE|L2 105608 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 229.75-28 chr5 85839734 85840064 + 0.75 NA Intergenic MIR3|SINE|MIR -442545 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 177.25-20 chr13 77572406 77572732 + 0.75 NA intron (NM_003843, intron 9 of 31) MLT1C|LTR|ERVL-MaLR 33982 NR_126412 104355296 Hs.667682 NR_126412 ENSG00000224347 SCEL-AS1 - SCEL antisense RNA 1 ncRNA 306.25-13 chr8 50564834 50565774 + 0.75 NA intron (NR_135795, intron 12 of 18) L1MC3|LINE|L1 401173 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 261.25-7 chr2 149232264 149232692 + 0.75 NA Intergenic L1PB1|LINE|L1 -97507 NM_001195685 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 195.25-13 chr14 45210175 45210566 + 0.75 NA intron (NM_018353, intron 14 of 16) intron (NM_018353, intron 14 of 16) 42832 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 151.25-40 chr2 64104088 64104315 + 0.75 NA intron (NM_020651, intron 3 of 6) intron (NM_020651, intron 3 of 6) 40219 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 242-4 chr10 57927968 57928464 + 0.75 NA Intergenic L2|LINE|L2 339678 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 215.5-13 chr14 60483739 60484149 + 0.75 NA intron (NM_174978, intron 3 of 17) intron (NM_174978, intron 3 of 17) 2119 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 207.75-3 chr10 49122962 49123494 + 0.75 NA intron (NR_038973, intron 1 of 5) L1MB7|LINE|L1 1389 NR_038973 100506733 Hs.404175 NR_038973 ENSG00000234736 FAM170B-AS1 - FAM170B antisense RNA 1 ncRNA 306.5-4 chr2 196122114 196122829 + 0.75 NA Intergenic Intergenic 49107 NM_004226 9262 Hs.88297 NM_004226 ENSG00000081320 STK17B DRAK2 serine/threonine kinase 17b protein-coding 150-22 chr12 67270813 67271105 + 0.75 NA intron (NM_018448, intron 1 of 14) intron (NM_018448, intron 1 of 14) 1601 NM_018448 55832 Hs.546407 NM_018448 ENSG00000111530 CAND1 TIP120|TIP120A cullin associated and neddylation dissociated 1 protein-coding 176-73 chrX 75026540 75026827 + 0.75 NA Intergenic L1MB8|LINE|L1 -101231 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 243.25 chr1 43683239 43683729 + 0.75 NA intron (NM_014663, intron 11 of 21) intron (NM_014663, intron 11 of 21) 23857 NR_033827 100132774 Hs.655569 NR_033827 KDM4A-AS1 - KDM4A antisense RNA 1 ncRNA 238.25-11 chr18 910115 910695 + 0.75 NA 3' UTR (NM_001117, exon 4 of 4) 3' UTR (NM_001117, exon 4 of 4) 5039 NM_001117 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 154-95 chr6 155190658 155191066 + 0.75 NA intron (NM_012454, intron 13 of 25) intron (NM_012454, intron 13 of 25) -26104 NM_001010927 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 211.5-50 chr8 135199519 135200046 + 0.75 NA Intergenic Intergenic -34349 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 233-37 chr8 101625939 101626354 + 0.75 NA intron (NM_024915, intron 9 of 15) intron (NM_024915, intron 9 of 15) 133707 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 145.75-117 chr7 77375152 77375495 + 0.75 NA intron (NR_146937, intron 10 of 31) intron (NR_146937, intron 10 of 31) -39875 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 262-10 chr7 40693288 40693876 + 0.75 NA intron (NM_024728, intron 13 of 14) MIR|SINE|MIR 286357 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 281.25-7 chr16 60091338 60091774 + 0.75 NA Intergenic Intergenic 236203 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 180.75-44 chr3 182080962 182081355 + 0.75 NA Intergenic Intergenic 128794 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 238-12 chr3 106620004 106620547 + 0.75 NA Intergenic Intergenic 620363 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 261.75-17 chr5 55348843 55349279 + 0.75 NA intron (NM_015360, intron 11 of 26) intron (NM_015360, intron 11 of 26) 41072 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 262-13 chr8 122668722 122669441 + 0.75 NA Intergenic HAL1|LINE|L1 25025 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 188.75-23 chr17 70099118 70099530 + 0.75 NA intron (NM_001270422, intron 1 of 5) L3|LINE|CR1 -5521 NM_001291624 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 242.75-3 chr11 127146570 127147072 + 0.75 NA Intergenic Intergenic 79819 NR_120578 101929473 Hs.737523 NR_120578 ENSG00000255087 LOC101929473 - uncharacterized LOC101929473 ncRNA 300.5-15 chr6 165496968 165497589 + 0.75 NA intron (NM_006661, intron 3 of 22) intron (NM_006661, intron 3 of 22) 164822 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 259.25-11 chr5 105748779 105749207 + 0.75 NA Intergenic L1PREC2|LINE|L1 649519 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 199-2 chr1 186544116 186544539 + 0.75 NA Intergenic L1M2|LINE|L1 -83213 NM_002597 5132 Hs.654381 NM_002597 ENSG00000116703 PDC MEKA|PHD|PhLOP|PhLP phosducin protein-coding 250.25-11 chr19 34061575 34061947 + 0.75 NA Intergenic Intergenic -110743 NM_001114093 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 198.5-49 chr6 68193235 68193594 + 0.75 NA Intergenic MLT1F2|LTR|ERVL-MaLR 136485 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 213-39 chr9 119906936 119907385 + 0.75 NA Intergenic L2a|LINE|L2 -27900 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 176.25-32 chr16 62000517 62000839 + 0.75 NA intron (NM_001796, intron 2 of 11) L2b|LINE|L2 35760 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 213.75-21 chr4 53065356 53065870 + 0.75 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 203296 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 150.75-78 chr5 149146207 149146441 + 0.75 NA intron (NM_001370418, intron 1 of 18) L1PA16|LINE|L1 4593 NM_001370417 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 162.25-96 chr8 64963288 64963626 + 0.75 NA Intergenic L1MB3|LINE|L1 -164720 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 173-69 chr6 97266899 97267199 + 0.75 NA intron (NM_001350600, intron 7 of 23) L1MA8|LINE|L1 16167 NM_001350600 253714 Hs.444292 NM_198468 ENSG00000146263 MMS22L C6orf167|dJ39B17.2 MMS22 like, DNA repair protein protein-coding 269.75-3 chr14 100008455 100009103 + 0.75 NA intron (NM_001330221, intron 1 of 13) intron (NM_001330221, intron 1 of 13) 37357 NM_001330221 51466 Hs.125867 NM_016337 ENSG00000196405 EVL RNB6 Enah/Vasp-like protein-coding 271-4 chr14 54607059 54607580 + 0.75 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 39707 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 227.5-34 chr8 116950451 116950995 + 0.75 NA promoter-TSS (NM_001172813) promoter-TSS (NM_001172813) -228 NM_001172815 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 178.5-56 chr6 145694812 145695231 + 0.75 NA intron (NM_001360064, intron 1 of 3) L1M1|LINE|L1 -8144 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 212.25 chr1 79003294 79003710 + 0.75 NA intron (NM_022159, intron 2 of 14) intron (NM_022159, intron 2 of 14) 3228 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 269.75-2 chr14 85684996 85685647 + 0.75 NA Intergenic L1MEc|LINE|L1 151972 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 286.5-14 chr6 93442126 93442689 + 0.75 NA Intergenic L1MB5|LINE|L1 -22825 NM_001288630 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 206.75-15 chr14 56466525 56466955 + 0.75 NA Intergenic L1M2|LINE|L1 -47591 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 283.5-9 chr20 55320534 55321109 + 0.75 NA Intergenic Tigger13a|DNA|TcMar-Tigger -102222 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 184.5-24 chr12 28265485 28265861 + 0.75 NA intron (NM_001352082, intron 4 of 13) intron (NM_001352082, intron 4 of 13) -74935 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 177.25-43 chr22 28415685 28416247 + 0.75 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -43903 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 379.5-6 chr8 136940859 136941807 + 0.75 NA Intergenic MIR3|SINE|MIR 410535 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 347.25-5 chr2 214060644 214061224 + 0.75 NA intron (NR_047660, intron 12 of 14) L1MEc|LINE|L1 302867 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 303.5-12 chr4 93373212 93373923 + 0.75 NA intron (NM_001286838, intron 7 of 14) intron (NM_001286838, intron 7 of 14) -455186 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 194-59 chr9 71452281 71452764 + 0.75 NA Intergenic MIRc|SINE|MIR -5551 NM_001366143 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 159.25-36 chr2 125093790 125094136 + 0.75 NA Intergenic Intergenic 1024022 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 245.75-13 chr20 28813770 28814302 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -211371 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 176.25-51 chr5 50980361 50980692 + 0.75 NA Intergenic Intergenic -10339 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 230.75-3 chr1 233235978 233236380 + 0.75 NA intron (NM_014801, intron 9 of 33) intron (NM_014801, intron 9 of 33) 59546 NM_001328607 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 204-17 chr17 53742284 53742692 + 0.75 NA Intergenic AluSq2|SINE|Alu -80439 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 155-67 chr4 15545285 15545566 + 0.75 NA intron (NM_001080522, intron 18 of 37) intron (NM_001080522, intron 18 of 37) 75543 NM_001164720 57545 Hs.590928 NM_020785 ENSG00000048342 CC2D2A JBTS9|MKS6 coiled-coil and C2 domain containing 2A protein-coding 149.25-81 chr4 177578561 177578816 + 0.75 NA Intergenic MIRb|SINE|MIR -136185 NM_001171988 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 154-69 chr3 114954054 114954344 + 0.75 NA intron (NM_001348805, intron 3 of 10) intron (NM_001348805, intron 3 of 10) -53574 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 236.25-19 chr3 181672145 181672654 + 0.75 NA intron (NR_075090, intron 2 of 2) Charlie1a|DNA|hAT-Charlie -39526 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 174.75-34 chr2 101702044 101702357 + 0.75 NA intron (NM_145686, intron 2 of 30) intron (NM_145686, intron 2 of 30) 4493 NM_145687 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 222.75-2 chr1 52467394 52467942 + 0.75 NA intron (NM_001009881, intron 15 of 29) L2a|LINE|L2 63066 NM_032864 84950 Hs.5301 NM_032284 ENSG00000134748 PRPF38A PRP38A|Prp38 pre-mRNA processing factor 38A protein-coding 293.75-7 chr3 88499539 88499983 + 0.75 NA Intergenic L1M5|LINE|L1 161305 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 156-53 chr3 42312978 42313394 + 0.75 NA Intergenic MER101-int|LTR|ERV1 -47001 NM_000729 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 186-7 chr12 24010100 24010424 + 0.75 NA intron (NM_152989, intron 4 of 17) L2a|LINE|L2 -59230 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 153.5-52 chr2 142362758 142363063 + 0.75 NA Intergenic Intergenic -231209 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 150-35 chr2 53014378 53014630 + 0.75 NA Intergenic L1ME2|LINE|L1 -311889 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 273.25-2 chr1 215352532 215353054 + 0.75 NA Intergenic Intergenic -214511 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 262.5-18 chr8 84124748 84125399 + 0.75 NA Intergenic Intergenic -57714 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 196.25-47 chr6 64426792 64427244 + 0.75 NA intron (NM_001292009, intron 28 of 43) intron (NM_001292009, intron 28 of 43) 620182 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 157.5-63 chr4 28139813 28140134 + 0.75 NA Intergenic MIRb|SINE|MIR -679609 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 215.5-47 chr6 155836079 155836598 + 0.75 NA Intergenic Intergenic -110459 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 260.75-3 chr10 74926046 74926682 + 0.75 NA intron (NR_134476, intron 1 of 1) AluSx|SINE|Alu 13578 NR_134476 101929165 Hs.670533 NR_134476 LOC101929165 - uncharacterized LOC101929165 ncRNA 185.75-24 chr16 20222920 20223263 + 0.75 NA Intergenic Intergenic 104422 NM_001502 2813 Hs.53985 NM_001502 ENSG00000169347 GP2 ZAP75 glycoprotein 2 protein-coding 233.5-31 chr8 87142988 87143434 + 0.75 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 276796 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 266.75-14 chr4 48503974 48504448 + 0.75 NA intron (NM_015030, intron 60 of 63) intron (NM_015030, intron 60 of 63) 13959 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 338.5-8 chr6 140589729 140590664 + 0.75 NA Intergenic Intergenic -93618 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 193-42 chr4 184084141 184084575 + 0.75 NA Intergenic L1MB8|LINE|L1 133515 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 162.25-84 chr7 26571540 26571783 + 0.75 NA Intergenic L1ME3D|LINE|L1 -32836 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 173-24 chr12 74808640 74808983 + 0.75 NA Intergenic Intergenic 270976 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 187.75-45 chr22 26288433 26288938 + 0.75 NA intron (NM_001184776, intron 1 of 14) MIRb|SINE|MIR 119211 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 257-3 chr1 239688308 239688862 + 0.75 NA intron (NM_000740, intron 3 of 4) (AT)n|Simple_repeat|Simple_repeat 30534 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 318.5-6 chr3 186446812 186447411 + 0.75 NA Intergenic MER103C|DNA|hAT-Charlie 6766 NR_151708 107986164 Hs.131227 NR_151708 ENSG00000234548 LINC02020 - long intergenic non-protein coding RNA 2020 ncRNA 181-33 chr4 85465747 85466116 + 0.75 NA Intergenic Intergenic -9219 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 228-23 chr5 106618218 106618583 + 0.75 NA Intergenic Intergenic 392614 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 189.5-57 chr5 123048670 123049047 + 0.75 NA Intergenic MLT2A2|LTR|ERVL -12133 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 212.75-3 chr11 36224787 36225386 + 0.75 NA intron (NM_001304264, intron 4 of 5) intron (NM_001304264, intron 4 of 5) 64338 NM_001101653 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 162.75-86 chr8 111610846 111611326 + 0.75 NA Intergenic Intergenic 234447 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 239.5-19 chr2 69350963 69351424 + 0.75 NA intron (NM_002056, intron 8 of 18) intron (NM_002056, intron 8 of 18) 36034 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 194 chr1 63414940 63415521 + 0.75 NA intron (NM_013339, intron 10 of 14) Tigger15a|DNA|TcMar-Tigger 47603 NM_013339 29929 Hs.258501 NM_013339 ENSG00000088035 ALG6 CDG1C ALG6 alpha-1,3-glucosyltransferase protein-coding 162-27 chr15 54016497 54016860 + 0.75 NA intron (NM_001329919, intron 2 of 31) intron (NM_001329919, intron 2 of 31) 4030 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 170.75-45 chr3 176943605 176944141 + 0.75 NA Intergenic L1PB1|LINE|L1 -126872 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 282.75-6 chr3 152524299 152524807 + 0.75 NA Intergenic Intergenic -183563 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 185-65 chr7 2173073 2173497 + 0.75 NA intron (NM_001013837, intron 10 of 18) HAL1|LINE|L1 59660 NM_003550 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 347.5-2 chr10 100535286 100535986 + 0.75 NA promoter-TSS (NM_017902) promoter-TSS (NM_017902) -307 NM_017902 55662 Hs.500788 NM_017902 ENSG00000166135 HIF1AN FIH1 hypoxia inducible factor 1 subunit alpha inhibitor protein-coding 154-44 chr18 42594915 42595254 + 0.75 NA intron (NR_046174, intron 7 of 9) L1PA15-16|LINE|L1 408416 NR_046458 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 156-72 chr5 13300103 13300456 + 0.75 NA Intergenic Tigger3a|DNA|TcMar-Tigger -267393 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 213.75-39 chr8 63865373 63865882 + 0.75 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 96197 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 324.25 chr10 23420477 23421192 + 0.75 NA Intergenic AluSx3|SINE|Alu -18435 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 235.75-24 chr5 81667455 81667875 + 0.75 NA intron (NM_012446, intron 1 of 16) intron (NM_012446, intron 1 of 16) 83588 NM_001256732 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 161.5-32 chr14 48990370 48990624 + 0.75 NA Intergenic Intergenic 595883 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 194.75-19 chr2 49377587 49377861 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -223197 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 205.75-7 chr1 109872201 109872814 + 0.75 NA Intergenic MLT1K|LTR|ERVL-MaLR -38342 NM_172212 1435 Hs.173894 NM_000757 ENSG00000184371 CSF1 CSF-1|MCSF colony stimulating factor 1 protein-coding 205.25-26 chr3 103217750 103218177 + 0.75 NA Intergenic Intergenic 306153 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 159-40 chr2 189143501 189143773 + 0.75 NA intron (NM_000393, intron 1 of 53) intron (NM_000393, intron 1 of 53) -10526 NR_036076 100422908 NR_036076 ENSG00000264725 MIR3129 mir-3129 microRNA 3129 ncRNA 191-16 chr11 114450610 114451013 + 0.75 NA TTS (NM_015523) TTS (NM_015523) 11344 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 275-15 chr4 93184880 93185411 + 0.75 NA intron (NM_001286838, intron 3 of 14) intron (NM_001286838, intron 3 of 14) -643608 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 276.75-17 chr8 25424565 25425353 + 0.75 NA promoter-TSS (NM_000825) promoter-TSS (NM_000825) 81 NM_000825 2796 Hs.82963 NM_000825 ENSG00000147437 GNRH1 GNRH|GRH|LHRH|LNRH gonadotropin releasing hormone 1 protein-coding 306.25-12 chr6 142000609 142001065 + 0.75 NA Intergenic L1MA4A|LINE|L1 87962 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 257.75-15 chr3 2896744 2897287 + 0.75 NA intron (NM_175613, intron 1 of 15) intron (NM_175613, intron 1 of 15) 4800 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 166-58 chr5 54195669 54196104 + 0.75 NA intron (NM_019087, intron 1 of 4) MIR|SINE|MIR 114687 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 187.25-37 chr20 43766120 43766406 + 0.75 NA Intergenic Intergenic -39261 NM_176791 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 202.25-39 chr3 87399097 87399426 + 0.75 NA Intergenic Intergenic -122677 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 247.5 chr1 69304959 69305397 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR -128077 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 302.25-4 chr11 95493021 95493727 + 0.75 NA Intergenic L1ME1|LINE|L1 -260899 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 220-28 chr5 101972504 101972849 + 0.75 NA Intergenic L1MC|LINE|L1 323608 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 206.5-26 chr3 109266438 109266792 + 0.75 NA Intergenic AluSz|SINE|Alu 49902 NM_138815 151871 Hs.351113 NM_138815 ENSG00000163530 DPPA2 CT100|ECAT15-2|PESCRG1 developmental pluripotency associated 2 protein-coding 310.5-8 chr8 81992142 81992892 + 0.75 NA Intergenic L3|LINE|CR1 -150231 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 206.5-2 chr1 42713700 42714120 + 0.75 NA Intergenic L1MA4A|LINE|L1 26326 NM_001123395 149461 Hs.496270 NM_148960 ENSG00000164007 CLDN19 HOMG5 claudin 19 protein-coding 232.75-33 chr8 81551680 81552366 + 0.75 NA Intergenic L2b|LINE|L2 -20633 NM_001105281 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 157-96 chr8 107333174 107333660 + 0.75 NA intron (NM_001199859, intron 3 of 8) intron (NM_001199859, intron 3 of 8) 3098 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 215.75-21 chr2 112202802 112203423 + 0.75 NA Intergenic L1M4|LINE|L1 51930 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 253.25-20 chr8 125121828 125122452 + 0.75 NA intron (NM_001349486, intron 3 of 7) intron (NM_001349486, intron 3 of 7) 30280 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 204.75-32 chr3 45853312 45853770 + 0.75 NA intron (NM_001276378, intron 3 of 11) intron (NM_001276378, intron 3 of 11) -11422 NR_075080 54585 Hs.30824 NM_020347 ENSG00000163818 LZTFL1 BBS17 leucine zipper transcription factor like 1 protein-coding 209-25 chr2 126264223 126264769 + 0.75 NA Intergenic AluSp|SINE|Alu -146511 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 196.25-23 chr17 20939242 20939575 + 0.75 NA intron (NR_160712, intron 1 of 3) L1M5|LINE|L1 842 NR_160719 339260 Hs.661076 NR_123730 ENSG00000233098 LOC339260 - uncharacterized LOC339260 ncRNA 293.75-9 chr4 136476215 136476633 + 0.75 NA Intergenic Intergenic -562744 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 221.25-13 chr17 11518617 11519114 + 0.75 NA intron (NM_001173462, intron 3 of 4) L2a|LINE|L2 -79605 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 170-51 chr5 113366663 113367002 + 0.75 NA intron (NM_001085377, intron 2 of 18) AluJr|SINE|Alu 68157 NM_032028 83942 Hs.519507 NM_032028 ENSG00000212122 TSSK1B FKSG81|SPOGA4|STK22D|TSK1|TSSK1 testis specific serine kinase 1B protein-coding 181.75-2 chr1 48729316 48729734 + 0.75 NA intron (NR_146232, intron 4 of 4) intron (NR_146232, intron 4 of 4) 47366 NM_024603 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 163.75-74 chr9 32422303 32422658 + 0.75 NA intron (NM_001278352, intron 9 of 21) L4_A_Mam|LINE|RTE-X 37837 NM_002197 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 194.75-42 chr6 140561097 140561557 + 0.75 NA Intergenic MIRb|SINE|MIR -122487 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 242.5-24 chr3 168038381 168038769 + 0.75 NA intron (NM_001308155, intron 6 of 14) MIRb|SINE|MIR 57349 NM_014498 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 152-58 chr4 33976511 33976800 + 0.75 NA intron (NR_125902, intron 2 of 4) intron (NR_125902, intron 2 of 4) 63238 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 157.5-77 chr5 82361833 82362103 + 0.75 NA Intergenic Intergenic 82506 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 163.75-25 chr17 60953247 60953545 + 0.75 NA intron (NM_001330413, intron 14 of 25) L1PREC2|LINE|L1 275545 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 199-12 chr15 70700735 70701170 + 0.75 NA intron (NM_018003, intron 1 of 18) intron (NM_018003, intron 1 of 18) 1330 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 297.75-3 chr12 78732261 78733013 + 0.75 NA Intergenic THE1D|LTR|ERVL-MaLR -131345 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 183-19 chr16 10023157 10023493 + 0.75 NA intron (NM_001134408, intron 2 of 13) intron (NM_001134408, intron 2 of 13) 158742 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 173-64 chr6 12415863 12416215 + 0.75 NA Intergenic Intergenic 125678 NM_001168319 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 229-19 chr6 12756177 12756708 + 0.75 NA intron (NM_001322308, intron 3 of 13) intron (NM_001322308, intron 3 of 13) 37743 NM_001322310 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 148-40 chr18 3926338 3926701 + 0.75 NA intron (NM_001242761, intron 3 of 11) (AT)n|Simple_repeat|Simple_repeat -35834 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 162.75-65 chr6 33913969 33914286 + 0.75 NA Intergenic Intergenic 14992 NR_106982 102466816 NR_106982 ENSG00000276824 MIR7159 hsa-mir-7159 microRNA 7159 ncRNA 342.25-7 chr4 69964276 69964891 + 0.75 NA Intergenic Intergenic -3572 NM_001302770 1447 Hs.2242 NM_001891 ENSG00000135222 CSN2 CASB casein beta protein-coding 153-39 chr2 157079962 157080307 + 0.75 NA Intergenic Intergenic -177571 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 206-35 chr7 95115982 95116336 + 0.75 NA intron (NM_017650, intron 3 of 15) L1MC4a|LINE|L1 206261 NM_001166163 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 204.25-52 chr8 84975645 84975989 + 0.75 NA Intergenic L1MA3|LINE|L1 -131421 NM_001349636 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 148.75 chr1 48260809 48261182 + 0.75 NA Intergenic Tigger15a|DNA|TcMar-Tigger 38279 NM_001011547 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 202.5-11 chr11 116646315 116646646 + 0.75 NA intron (NR_135069, intron 1 of 2) intron (NR_135069, intron 1 of 2) 7058 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 167.75-8 chr10 24302394 24302815 + 0.75 NA intron (NM_019590, intron 2 of 20) L2a|LINE|L2 26919 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 283.5-10 chr22 19924167 19924764 + 0.75 NA intron (NM_001352302, intron 2 of 17) intron (NM_001352302, intron 2 of 17) 8088 NM_001352301 10587 Hs.443430 NM_006440 ENSG00000184470 TXNRD2 GCCD5|SELZ|TR|TR-BETA|TR3|TRXR2 thioredoxin reductase 2 protein-coding 147.25-19 chr10_GL383545v1_alt 38209 38458 + 0.75 NA intron (NR_138082, intron 1 of 1) intron (NR_138082, intron 1 of 1) 35315 NR_138082 101060171 Hs.568842 NR_138082 ARMC4P1 - armadillo repeat containing 4 pseudogene 1 pseudo 172.5-35 chr2 51387263 51387600 + 0.75 NA intron (NR_135237, intron 4 of 10) L2a|LINE|L2 354830 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 194.5-19 chr14 42783079 42783536 + 0.75 NA Intergenic L1M5|LINE|L1 1176451 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 148.5-32 chr16 72066922 72067364 + 0.75 NA intron (NM_020995, intron 1 of 4) HERVI-int|LTR|ERV1 3917 NM_020995 3250 Hs.655361 NM_020995 ENSG00000261701 HPR A-259H10.2|HP haptoglobin-related protein protein-coding 152-93 chr8 27520951 27521308 + 0.75 NA intron (NM_001979, intron 10 of 18) intron (NM_001979, intron 10 of 18) 29986 NM_001979 2053 Hs.212088 NM_001979 ENSG00000120915 EPHX2 ABHD20|CEH|SEH epoxide hydrolase 2 protein-coding 184.75-42 chr2 41730441 41730694 + 0.75 NA Intergenic Intergenic -146988 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 160.75-84 chr4 91936950 91937228 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 340213 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 180-38 chr2 223995536 223995853 + 0.75 NA intron (NM_001136530, intron 3 of 8) MER20B|DNA|hAT-Charlie 35784 NR_073116 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 166.75-21 chr13 37064313 37064546 + 0.75 NA Intergenic MLT2C1|LTR|ERVL -4716 NM_017569 55578 Hs.435815 NM_017569 ENSG00000102710 SUPT20H C13|C13orf19|FAM48A|FP757|P38IP|SPT20 SPT20 homolog, SAGA complex component protein-coding 169-57 chr6 64685923 64686314 + 0.75 NA intron (NM_001292009, intron 22 of 43) L1MEf|LINE|L1 -615300 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 162.75-44 chr20 3635874 3636360 + 0.75 NA intron (NM_139321, intron 26 of 28) intron (NM_139321, intron 26 of 28) 27282 NM_145762 64096 Hs.302025 NM_022139 ENSG00000125861 GFRA4 - GDNF family receptor alpha 4 protein-coding 201.5-7 chr11 131027337 131027700 + 0.75 NA Intergenic MER110A|LTR|ERV1 -111031 NM_001347927 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 243.5-22 chr6 49065857 49066523 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 397063 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 246.5-26 chr8 75099280 75099641 + 0.75 NA Intergenic Intergenic 99305 NM_001286777 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 205.5-17 chr16 56701621 56701934 + 0.75 NA Intergenic MER20|DNA|hAT-Charlie 19307 NM_005952 4501 Hs.374950 NM_005952 ENSG00000187193 MT1X MT-1l|MT1 metallothionein 1X protein-coding 198.5-6 chr1 245026800 245027113 + 0.75 NA intron (NM_032328, intron 3 of 7) L1ME3Cz|LINE|L1 -56087 NR_111907 101928068 Hs.134857 NR_111907 LOC101928068 - uncharacterized LOC101928068 ncRNA 149.25-42 chr19 46720575 46720904 + 0.75 NA exon (NM_013403, exon 17 of 18) exon (NM_013403, exon 17 of 18) -3612 NM_016457 25865 Hs.466987 NM_016457 ENSG00000105287 PRKD2 HSPC187|PKD2|nPKC-D2 protein kinase D2 protein-coding 219.75-45 chrX 83069635 83070084 + 0.75 NA Intergenic Intergenic -438431 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 267.75-15 chr5 156376834 156377425 + 0.75 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 49965 NM_001128209 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 238-11 chr20 43166678 43167290 + 0.75 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 22922 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 236.75-7 chr13 112003222 112003654 + 0.75 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) 31128 NR_120392 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 266-4 chr15 73168848 73169328 + 0.75 NA intron (NM_002499, intron 5 of 28) intron (NM_002499, intron 5 of 28) 116604 NM_001172623 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 193.5-32 chr18 77656691 77657007 + 0.75 NA Intergenic MamGyp-int|LTR|Gypsy 336878 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 218.75-5 chr10 118570364 118570779 + 0.75 NA Intergenic Intergenic 25077 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 201.25-44 chr7 8347905 8348409 + 0.75 NA Intergenic Intergenic -85452 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 217.75-18 chr2 50478933 50479409 + 0.75 NA intron (NM_001330093, intron 15 of 22) intron (NM_001330093, intron 15 of 22) -131415 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 198.25-16 chr17 51023015 51023352 + 0.75 NA intron (NM_001130527, intron 5 of 29) MIRb|SINE|MIR 23695 NM_001251971 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 218.25-20 chr2 181124872 181125543 + 0.75 NA intron (NR_130784, intron 1 of 4) intron (NR_130784, intron 1 of 4) 1370 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 156-30 chr16 80144368 80144882 + 0.75 NA Intergenic Intergenic 349376 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 184.75-30 chr15 59568036 59568473 + 0.75 NA Intergenic Tigger3|DNA|TcMar-Tigger -43529 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 204.75-28 chr20 40252652 40253090 + 0.75 NA Intergenic THE1C|LTR|ERVL-MaLR 248410 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 244.5-31 chr8 137440144 137440717 + 0.75 NA Intergenic Intergenic -26842 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 168.25-64 chr5 162943554 162944034 + 0.75 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -493777 NM_001364019 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 275-13 chr3 89732808 89733378 + 0.75 NA Intergenic Intergenic 625472 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 163-17 chr11 60578946 60579374 + 0.75 NA Intergenic MLT1H2|LTR|ERVL-MaLR -36591 NR_026946 283197 Hs.372650 NM_174939 ENSG00000181995 LINC00301 C11orf64|NCRNA00301 long intergenic non-protein coding RNA 301 ncRNA 212.25-27 chr2 225545077 225545424 + 0.75 NA intron (NM_001371273, intron 4 of 7) L1MA3|LINE|L1 144364 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 224.25-26 chr3 128118144 128118531 + 0.75 NA intron (NM_003707, intron 2 of 10) intron (NM_003707, intron 2 of 10) 5475 NM_003707 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 200-3 chr1 178998871 178999468 + 0.75 NA Intergenic Intergenic -26635 NM_001324310 9917 Hs.5737 NM_014864 ENSG00000116199 FAM20B gxk1 FAM20B glycosaminoglycan xylosylkinase protein-coding 170.25-24 chr17 9696883 9697142 + 0.75 NA intron (NM_001267576, intron 9 of 14) AluSz|SINE|Alu 51475 NM_001267576 124739 Hs.709621 NM_153210 ENSG00000154914 USP43 - ubiquitin specific peptidase 43 protein-coding 159.5-100 chr8 127802528 127802765 + 0.75 NA intron (NR_003367, intron 1 of 8) MER33|DNA|hAT-Charlie 6684 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 212-34 chr6 123344959 123345397 + 0.75 NA intron (NM_006073, intron 21 of 40) L1MC1|LINE|L1 -94426 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 288.25-4 chr18 12452115 12452709 + 0.75 NA intron (NM_020148, intron 14 of 15) intron (NM_020148, intron 14 of 15) 19638 NR_136514 105371998 Hs.515283 NR_136514 LOC105371998 - uncharacterized LOC105371998 ncRNA 149.25-10 chr10 74738504 74738973 + 0.75 NA Intergenic AluJb|SINE|Alu -86517 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 260.75-6 chr11 82934712 82935134 + 0.75 NA TTS (NM_145018) TTS (NM_145018) -33183 NM_001319214 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 279.75-4 chr13 94050800 94051233 + 0.75 NA intron (NM_005708, intron 4 of 8) intron (NM_005708, intron 4 of 8) 136975 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 213.75-2 chr1 81760935 81761490 + 0.75 NA intron (NM_001297704, intron 1 of 20) intron (NM_001297704, intron 1 of 20) -39164 NM_001366005 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 147.75-41 chr16 52163722 52163953 + 0.75 NA Intergenic L1ME3C|LINE|L1 78556 NR_104655 102467079 Hs.98466 NR_104655 ENSG00000261749 LINC02180 - long intergenic non-protein coding RNA 2180 ncRNA 213.25-35 chr5 20408052 20408353 + 0.75 NA intron (NM_001349558, intron 1 of 15) L1MB2|LINE|L1 102651 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 211.5-47 chr8 115402837 115403247 + 0.75 NA Intergenic Intergenic 264971 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 156.5 chr1 14214493 14214774 + 0.75 NA Intergenic Intergenic 205340 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 152.75-100 chr8 64946715 64947015 + 0.75 NA Intergenic L1MC4a|LINE|L1 -148128 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 160.75-57 chr2 39885109 39885371 + 0.75 NA Intergenic Intergenic -32394 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 219-24 chr6 48171846 48172237 + 0.75 NA Intergenic L1MD1|LINE|L1 -103352 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 285-6 chr6 93361317 93361738 + 0.75 NA intron (NM_004440, intron 3 of 16) intron (NM_004440, intron 3 of 16) 58032 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 265-2 chr1 244261687 244262145 + 0.75 NA Intergenic L1M5|LINE|L1 -90719 NM_001276348 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 202.25-60 chrX 110959963 110960317 + 0.75 NA intron (NM_001128167, intron 1 of 14) L2a|LINE|L2 15743 NM_001324330 5063 Hs.593599 NM_002578 ENSG00000077264 PAK3 ARA|MRX30|MRX47|OPHN3|PAK-3|PAK3beta|bPAK|beta-PAK p21 (RAC1) activated kinase 3 protein-coding 288.25-11 chr6 74283090 74283786 + 0.75 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 213987 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 288.25-12 chr7 104547968 104548435 + 0.75 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 219545 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 263.75-20 chr8 110156863 110157322 + 0.75 NA Intergenic Intergenic -181321 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 297.5-9 chr2 217649404 217649921 + 0.75 NA intron (NR_026597, intron 1 of 12) L1M5|LINE|L1 106931 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 193.75 chr1 104442089 104442430 + 0.75 NA Intergenic Intergenic 369236 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 195-34 chr3 158008709 158009079 + 0.75 NA Intergenic L1MEc|LINE|L1 97269 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 149.25-62 chr3 77529433 77529799 + 0.75 NA intron (NM_001290039, intron 7 of 26) intron (NM_001290039, intron 7 of 26) 431604 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 161.75-64 chr4 69729402 69729687 + 0.75 NA intron (NM_014465, intron 7 of 7) intron (NM_014465, intron 7 of 7) 31076 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 272.75 chr1 80760378 80760964 + 0.75 NA Intergenic Intergenic 119384 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 166.75-36 chr19 34778266 34778679 + 0.75 NA Intergenic L1MD|LINE|L1 -5257 NM_001007248 148103 Hs.590961 NM_001007247 ENSG00000153896 ZNF599 - zinc finger protein 599 protein-coding 212.5-12 chr14 65674576 65675087 + 0.75 NA intron (NR_038167, intron 7 of 8) intron (NR_038167, intron 7 of 8) 203729 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 183.5-12 chr12 24154700 24155094 + 0.75 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -57524 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 215.5-43 chr6 72314769 72315228 + 0.75 NA intron (NM_001350466, intron 19 of 24) intron (NM_001350466, intron 19 of 24) -51748 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 274.25-13 chr6 96731995 96732821 + 0.75 NA Intergenic Intergenic 105069 NM_001143957 81491 Hs.221364 NM_030784 ENSG00000112218 GPR63 PSP24(beta)|PSP24B G protein-coupled receptor 63 protein-coding 301.25-2 chr13 60314476 60315218 + 0.75 NA Intergenic L2c|LINE|L2 -46743 NR_047022 100874169 Hs.171027 NR_047022 LINC00434 - long intergenic non-protein coding RNA 434 ncRNA 168.5-39 chr17 33578633 33579122 + 0.75 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -45117 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 171.5-18 chr10 125489173 125489478 + 0.75 NA Intergenic L1ME3G|LINE|L1 -85046 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 250-4 chr10 130806510 130806985 + 0.75 NA Intergenic Ricksha_0|DNA|MULE-MuDR 155921 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 177-33 chr2 191181288 191181668 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -29882 NM_001243835 6775 Hs.80642 NM_003151 ENSG00000138378 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 186.75-77 chr6 75855694 75856155 + 0.75 NA intron (NM_001300899, intron 12 of 32) intron (NM_001300899, intron 12 of 32) 106685 NM_001368136 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 264.5-17 chr3 26907855 26908331 + 0.75 NA Intergenic Intergenic 213536 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 259.25-5 chr2 40754755 40755355 + 0.75 NA Intergenic Intergenic -242620 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 212.5-58 chrX 4864956 4865319 + 0.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -231565 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 233.25-2 chr1 73759781 73760452 + 0.75 NA Intergenic Intergenic 85437 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 153.75-23 chr17 22726818 22727248 + 0.75 NA Intergenic Intergenic 203922 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2 like 1 protein-coding 204.25-11 chr14 50510811 50511142 + 0.75 NA intron (NM_198794, intron 2 of 31) L1MC2|LINE|L1 21593 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 222-20 chr5 129494630 129495039 + 0.75 NA intron (NM_133638, intron 2 of 22) L2|LINE|L2 -34145 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 170.25-46 chr3 96206833 96207236 + 0.75 NA Intergenic Intergenic -152930 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 155-96 chr7 47565389 47565811 + 0.75 NA intron (NM_022748, intron 1 of 30) AluSx3|SINE|Alu 16511 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 233-24 chr4 79421653 79422016 + 0.75 NA Intergenic LTR33A_|LTR|ERVL -13606 NM_033214 2712 Hs.98008 NM_033214 ENSG00000196475 GK2 GKP2|GKTA glycerol kinase 2 protein-coding 280.5-11 chr6 26065656 26066163 + 0.75 NA Intergenic Intergenic -9438 NM_005319 3006 Hs.7644 NM_005319 ENSG00000187837 HIST1H1C H1.2|H1C|H1F2|H1s-1 histone cluster 1 H1 family member c protein-coding 248.5-29 chr8 135476816 135477449 + 0.75 NA intron (NM_006558, intron 1 of 8) intron (NM_006558, intron 1 of 8) 19676 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 157.75-52 chr2 154890870 154891202 + 0.75 NA Intergenic L2a|LINE|L2 192341 NM_002239 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 261.75-11 chr2 219102060 219102524 + 0.75 NA intron (NM_024782, intron 5 of 7) L1ME4a|LINE|L1 -41371 NM_002181 3549 Hs.654504 NM_002181 ENSG00000163501 IHH BDA1|HHG2 Indian hedgehog signaling molecule protein-coding 230.25-11 chr13 90802551 90803055 + 0.75 NA Intergenic Intergenic 123794 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 178.25-71 chr8 81538207 81538559 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR -6993 NM_001105281 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 223.75-29 chrX 96778155 96778513 + 0.75 NA intron (NM_007309, intron 4 of 26) L1MC4|LINE|L1 93492 NM_006729 1730 Hs.226483 NM_006729 ENSG00000147202 DIAPH2 DIA|DIA2|DRF2|POF|POF2|POF2A diaphanous related formin 2 protein-coding 211-38 chr9 75193598 75194053 + 0.75 NA Intergenic Intergenic 105311 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 236.5-4 chr11 81161819 81162432 + 0.75 NA Intergenic MIR|SINE|MIR -399322 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 197-48 chr8 138428628 138429029 + 0.75 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 68433 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 355.75-3 chr11 5794077 5794996 + 0.75 NA Intergenic AluSq2|SINE|Alu -5720 NM_001001913 79473 Hs.690209 NM_001001913 ENSG00000181001 OR52N1 OR11-61 olfactory receptor family 52 subfamily N member 1 protein-coding 159.5-22 chr14 75385418 75385887 + 0.75 NA Intergenic L1MC3|LINE|L1 -42072 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 193.5-59 chr5 53600408 53600923 + 0.75 NA intron (NR_134475, intron 2 of 5) intron (NR_134475, intron 2 of 5) 40026 NR_134475 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 241.75-9 chr17 30422641 30423131 + 0.75 NA exon (NM_001199775, exon 5 of 21) exon (NM_001199775, exon 5 of 21) 42408 NM_001199775 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 152.75-83 chr6 40429633 40430026 + 0.75 NA intron (NM_020737, intron 2 of 2) L1MC5a|LINE|L1 51492 NR_160959 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 209.25-13 chr15 82953553 82954107 + 0.75 NA Intergenic AluY|SINE|Alu -1110 NM_199330 9455 Hs.578443 NM_004839 ENSG00000103942 HOMER2 ACPD|CPD|DFNA68|HOMER-2|VESL-2 homer scaffold protein 2 protein-coding 229.5-39 chr7 22795729 22796235 + 0.75 NA Intergenic THE1B-int|LTR|ERVL-MaLR 26867 NM_019059 54543 Hs.112318 NM_019059 ENSG00000196683 TOMM7 TOM7 translocase of outer mitochondrial membrane 7 protein-coding 190-11 chr11 37601142 37601490 + 0.75 NA Intergenic Intergenic -337285 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 179.25-26 chr13 77535145 77535534 + 0.75 NA promoter-TSS (NM_001160706) promoter-TSS (NM_001160706) -335 NM_001160706 8796 Hs.534699 NM_003843 ENSG00000136155 SCEL - sciellin protein-coding 268.5-20 chr5 27308484 27308941 + 0.75 NA Intergenic L1ME1|LINE|L1 -163580 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 166.75-77 chr6 80324961 80325223 + 0.75 NA intron (NR_134945, intron 10 of 10) intron (NR_134945, intron 10 of 10) 218421 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 249.5-4 chr10 130372460 130373107 + 0.75 NA Intergenic Intergenic 236374 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 157.75-33 chr13 108275753 108276048 + 0.75 NA intron (NM_001145645, intron 2 of 4) intron (NM_001145645, intron 2 of 4) 6271 NM_001145645 10673 Hs.525157 NM_006573 ENSG00000102524 TNFSF13B BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4 TNF superfamily member 13b protein-coding 220.25-8 chr12 33058439 33058985 + 0.75 NA Intergenic AluSp|SINE|Alu -161866 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 216.75-16 chr2 88851865 88852276 + 0.75 NA Intergenic Intergenic 39700 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 158.75-26 chr14 73833841 73834213 + 0.75 NA Intergenic Intergenic -3892 NR_135238 100506498 Hs.569330 NR_135238 ENSG00000258586 LINC02274 - long intergenic non-protein coding RNA 2274 ncRNA 178.5-43 chr20 57254078 57254475 + 0.75 NA intron (NM_001719, intron 1 of 6) AluSx|SINE|Alu 12365 NM_001719 655 Hs.473163 NM_001719 ENSG00000101144 BMP7 OP-1 bone morphogenetic protein 7 protein-coding 181.5-36 chr2 101853230 101853561 + 0.75 NA intron (NM_145686, intron 12 of 30) HAL1|LINE|L1 -130070 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 266-10 chr5 105310225 105310715 + 0.75 NA Intergenic Intergenic 210996 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 194.5-20 chr14 48626425 48626794 + 0.75 NA Intergenic Intergenic -831595 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 174.25-60 chr6 126966489 126966753 + 0.75 NA Intergenic L2c|LINE|L2 -152050 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 185.75-10 chr10 94014299 94014688 + 0.75 NA intron (NM_001288989, intron 1 of 32) AluJr|SINE|Alu 20562 NM_001288989 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 150.5-51 chr18 73251799 73252150 + 0.75 NA intron (NR_034133, intron 2 of 5) L1MC3|LINE|L1 12524 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 146.5-112 chrX 52595611 52595922 + 0.75 NA Intergenic MER20B|DNA|hAT-Charlie -27169 NR_027250 280659 Hs.694472 NM_174961 SSX8P SSX8 SSX family member 8, pseudogene pseudo 183.75-58 chr3 35658981 35659495 + 0.75 NA intron (NM_016300, intron 1 of 19) intron (NM_016300, intron 1 of 19) 16881 NM_016300 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 151-7 chr10 36624408 36624701 + 0.75 NA Intergenic Intergenic -501303 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 208.5-37 chr2 220737027 220737514 + 0.75 NA Intergenic Intergenic -830705 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 258.25-23 chr7 107610232 107610864 + 0.75 NA intron (NR_163929, intron 6 of 7) intron (NR_163929, intron 6 of 7) 30302 NR_163937 333.5-8 chr8 132910800 132911341 + 0.75 NA intron (NM_003235, intron 18 of 47) intron (NM_003235, intron 18 of 47) 44112 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 151.75-10 chr1 244621098 244621345 + 0.75 NA intron (NM_001130957, intron 20 of 21) (AT)n|Simple_repeat|Simple_repeat -31827 NR_123736 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 234.25-13 chr3 55704522 55704876 + 0.75 NA intron (NR_132749, intron 14 of 17) intron (NR_132749, intron 14 of 17) -45230 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 220-30 chr6 95796608 95797240 + 0.75 NA Intergenic MER45B|DNA|hAT-Tip100 -219050 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 167-78 chr7 31991634 31992047 + 0.75 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 78567 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 193-45 chr5 18609007 18609336 + 0.75 NA Intergenic (TCT)n|Simple_repeat|Simple_repeat 801897 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 206.5-12 chr12 41162518 41162887 + 0.75 NA Intergenic MER58A|DNA|hAT-Charlie -25618 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 220-25 chr4 149142517 149143009 + 0.75 NA Intergenic Charlie4a|DNA|hAT-Charlie -11532 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 174-21 chr15 51517231 51517529 + 0.75 NA intron (NM_001174116, intron 13 of 42) intron (NM_001174116, intron 13 of 42) 105391 NM_001174117 23312 Hs.511386 NM_015263 ENSG00000104093 DMXL2 DFNA71|PEPNS|RC3 Dmx like 2 protein-coding 227-8 chr2 123701246 123701598 + 0.75 NA Intergenic L1MC3|LINE|L1 323752 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 157.25-69 chr4 72975976 72976320 + 0.75 NA Intergenic Intergenic 93568 NM_001297732 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 196-41 chr6 55548093 55548498 + 0.75 NA intron (NR_109867, intron 1 of 3) intron (NR_109867, intron 1 of 3) 30919 NM_001287753 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 167.5-31 chr17 52480517 52480874 + 0.75 NA intron (NR_146898, intron 1 of 3) L1MEg|LINE|L1 90173 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 164.25-9 chr1 204030602 204031080 + 0.75 NA Intergenic AluJb|SINE|Alu 10423 NR_027902 284573 Hs.406979 NR_027902 ENSG00000176754 LINC00303 C1orf157|NCRNA00303 long intergenic non-protein coding RNA 303 ncRNA 220.25-6 chr10 66702509 66703223 + 0.75 NA intron (NM_001127384, intron 9 of 17) Tigger4|DNA|TcMar-Tigger -223170 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 210-19 chr18 33253920 33254234 + 0.75 NA intron (NM_001308126, intron 14 of 23) intron (NM_001308126, intron 14 of 23) 186494 NM_001371121 155.25-69 chr4 127109504 127109878 + 0.75 NA Intergenic L1PA13|LINE|L1 -523266 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 186-18 chr18 62857125 62857454 + 0.75 NA intron (NM_194449, intron 3 of 16) intron (NM_194449, intron 3 of 16) 141748 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 193.25-12 chr10 109624265 109624649 + 0.75 NA Intergenic Intergenic 298789 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 186-52 chr8 103025098 103025611 + 0.75 NA intron (NM_001695, intron 1 of 12) MER20B|DNA|hAT-Charlie 4271 NM_001695 528 Hs.86905 NM_001695 ENSG00000155097 ATP6V1C1 ATP6C|ATP6D|VATC|Vma5 ATPase H+ transporting V1 subunit C1 protein-coding 185.25-54 chr3 113384390 113384765 + 0.75 NA intron (NM_001164496, intron 15 of 34) MLT1B|LTR|ERVL-MaLR -19421 NR_046728 100874029 Hs.599665 NR_046728 ENSG00000243849 CFAP44-AS1 WDR52-AS1 CFAP44 antisense RNA 1 ncRNA 172.75-68 chr8 72557028 72557517 + 0.75 NA intron (NM_004770, intron 1 of 2) MamTip2|DNA|hAT-Tip100 20047 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 189-59 chr8 47834726 47835220 + 0.75 NA intron (NM_001081640, intron 58 of 84) AluY|SINE|Alu -96809 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT enhancer binding protein delta protein-coding 183.5-73 chr8 118833946 118834488 + 0.75 NA Intergenic L1M4|LINE|L1 117668 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 321-3 chr4 35954380 35955247 + 0.75 NA Intergenic L1PA15|LINE|L1 289126 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 155-17 chr11 97506949 97507175 + 0.75 NA Intergenic Intergenic 998637 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 185.75-12 chr11 65926383 65926815 + 0.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 7173 NM_006442 10589 Hs.356742 NM_006442 ENSG00000175550 DRAP1 NC2-alpha DR1 associated protein 1 protein-coding 147.25-17 chr10 98983017 98983339 + 0.75 NA intron (NM_021828, intron 3 of 11) Charlie3|DNA|hAT-Charlie -58610 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 165-59 chr3 136789968 136790385 + 0.75 NA Intergenic Intergenic -28843 NM_001097600 80723 Hs.477692 NM_025246 ENSG00000168917 SLC35G2 TMEM22 solute carrier family 35 member G2 protein-coding 169.25-65 chr9 83980726 83981007 + 0.75 NA promoter-TSS (NM_002140) promoter-TSS (NM_002140) 61 NM_001358292 80010 Hs.726327 NM_024945 ENSG00000178966 RMI1 BLAP75|C9orf76|FAAP75 RecQ mediated genome instability 1 protein-coding 176.75-92 chr9 17914876 17915252 + 0.75 NA Intergenic L1MA10|LINE|L1 335998 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 164.25-88 chr8 129242706 129243158 + 0.75 NA Intergenic MIR|SINE|MIR -1692 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 236.5-18 chr20 15938689 15939196 + 0.75 NA intron (NM_001351663, intron 12 of 17) Tigger1|DNA|TcMar-Tigger -15628 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 150-33 chr18 22402492 22402854 + 0.75 NA Intergenic Intergenic 15242 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 200.25-50 chr8 88819932 88820400 + 0.75 NA Intergenic Intergenic -492683 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 175.5-59 chr3 69487518 69487952 + 0.75 NA Intergenic Intergenic -101647 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 173-20 chr12 12611287 12611649 + 0.75 NA promoter-TSS (NM_001310) promoter-TSS (NM_001310) -408 NM_001310 1389 Hs.591156 NM_001310 ENSG00000111269 CREBL2 - cAMP responsive element binding protein like 2 protein-coding 213-11 chr15 58906631 58907270 + 0.75 NA intron (NR_135042, intron 4 of 18) MIRc|SINE|MIR 26729 NR_135043 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 151-15 chr14 56974916 56975189 + 0.75 NA Intergenic L1M6|LINE|L1 161894 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 184.5-42 chr2 18537163 18537503 + 0.75 NA Intergenic (TTCA)n|Simple_repeat|Simple_repeat 23320 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 172.25-18 chr12 82315855 82316195 + 0.75 NA Intergenic Intergenic 42362 NM_014167 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 333.25 chr1 192080983 192081605 + 0.75 NA Intergenic Intergenic -77168 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 262.25-11 chr4 113893024 113893382 + 0.75 NA Intergenic Intergenic 86444 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 183.75-65 chr4 71007443 71007827 + 0.75 NA intron (NM_000788, intron 2 of 6) L1ME3B|LINE|L1 13986 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 185.75-31 chr18 67311090 67311552 + 0.75 NA Intergenic Intergenic -205225 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 168.75-51 chr2 142069308 142069702 + 0.75 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 62196 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 204.5-38 chr6 42557848 42558272 + 0.75 NA Intergenic Intergenic -5962 NM_001363705 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 190-66 chr7 156993894 156994174 + 0.75 NA Intergenic Intergenic -12273 NR_147077 105375606 Hs.606605 NR_147077 ENSG00000235029 MNX1-AS2 - MNX1 antisense RNA 2 ncRNA 204.25-49 chr7 31922582 31923012 + 0.75 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 147610 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 189-58 chr7 11508657 11509090 + 0.75 NA intron (NM_015204, intron 6 of 26) L1MB1|LINE|L1 323325 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 274-2 chr10 64147260 64147776 + 0.75 NA Intergenic L1ME2z|LINE|L1 -625628 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 240.5-6 chr12 22255701 22256084 + 0.75 NA intron (NM_003034, intron 2 of 4) L2c|LINE|L2 78822 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 158-51 chr3 195366437 195366841 + 0.75 NA intron (NM_012287, intron 4 of 22) MER5B|DNA|hAT-Charlie 76381 NM_012287 23527 Hs.593373 NM_012287 ENSG00000114331 ACAP2 CENTB2|CNT-B2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 protein-coding 346.5-4 chr3 29028752 29029501 + 0.75 NA Intergenic Intergenic 251813 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 223.75-28 chr9 107868923 107869425 + 0.75 NA Intergenic Intergenic -379405 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 209.5-13 chr14 45063973 45064404 + 0.75 NA intron (NR_131765, intron 16 of 19) MER31B|LTR|ERV1 -19928 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 164.5-51 chr22 40094330 40094773 + 0.75 NA intron (NM_001024843, intron 1 of 23) intron (NM_001024843, intron 1 of 23) 49734 NM_001024843 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 148.25-54 chr20 53518346 53518614 + 0.75 NA Intergenic AluSq2|SINE|Alu -34290 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 146.25-76 chr5 6876252 6876509 + 0.75 NA Intergenic AluSz6|SINE|Alu -48459 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 178.5-7 chr10 32844767 32845203 + 0.75 NA intron (NM_001321115, intron 34 of 43) intron (NM_001321115, intron 34 of 43) 56487 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 193.5-21 chr14 54772041 54772355 + 0.75 NA intron (NM_015589, intron 8 of 11) MamRep434|DNA|TcMar-Tigger 17365 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 150.75-71 chr5 19219859 19220295 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 666195 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 267-9 chr5 126878770 126879277 + 0.75 NA intron (NM_178450, intron 3 of 4) MER77|LTR|ERVL 101887 NM_001198557 4001 Hs.89497 NM_005573 ENSG00000113368 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding 214.25-21 chr20 53022080 53022567 + 0.75 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) 49965 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 204.5-29 chr4 117423960 117424530 + 0.75 NA Intergenic L1PA13|LINE|L1 -4153 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 215-26 chr4 162240806 162241211 + 0.75 NA Intergenic MER63B|DNA|hAT-Blackjack -76974 NM_001128427 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 353.5 chr11 108306731 108307765 + 0.75 NA intron (NM_001351834, intron 38 of 63) AluSz6|SINE|Alu 83719 NM_001351836 472 Hs.367437 NM_000051 ENSG00000149311 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 181.5-31 chr17 59359305 59359651 + 0.75 NA intron (NM_001005404, intron 2 of 4) intron (NM_001005404, intron 2 of 4) -6605 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 155.25-15 chr11 43328342 43328809 + 0.75 NA intron (NR_024625, intron 9 of 14) intron (NR_024625, intron 9 of 14) 16579 NR_024625 8539 Hs.435771 NM_006595 ENSG00000166181 API5 AAC-11|AAC11 apoptosis inhibitor 5 protein-coding 234.75-4 chr1 119868276 119868688 + 0.75 NA Intergenic Intergenic -23602 NM_001047980 343505 NM_001047980 NBPF7 - NBPF member 7 protein-coding 256.25-19 chr8 138614997 138615474 + 0.75 NA intron (NM_152888, intron 55 of 64) intron (NM_152888, intron 55 of 64) -117505 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 196.5-16 chr14 54457371 54457866 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger -16244 NM_005776 10175 Hs.294603 NM_005776 ENSG00000100528 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 155.5-113 chr9 74898166 74898412 + 0.75 NA Intergenic LTR86A2|LTR|ERVL -10368 NM_017662 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 278.5-16 chr7 64465300 64465743 + 0.75 NA Intergenic Intergenic 31828 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 211.75-19 chr20 43846044 43846711 + 0.75 NA Intergenic Intergenic -48341 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 158.5-14 chr12 18609446 18609672 + 0.75 NA exon (NM_004570, exon 30 of 32) exon (NM_004570, exon 30 of 32) 127950 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 280.75-7 chr2 45525816 45526558 + 0.75 NA intron (NM_018079, intron 14 of 20) L1MB7|LINE|L1 85080 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 156.25-28 chr16 47136720 47137080 + 0.75 NA intron (NM_001201477, intron 1 of 8) intron (NM_001201477, intron 1 of 8) 7045 NM_001201477 81831 Hs.645802 NM_018092 ENSG00000171208 NETO2 BTCL2|NEOT2 neuropilin and tolloid like 2 protein-coding 256.25-10 chr14 47710491 47710916 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL -35749 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 228-20 chr4 124963195 124963579 + 0.75 NA Intergenic Intergenic -250655 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 252.5-26 chr6 170119528 170120191 + 0.75 NA Intergenic L1MEf|LINE|L1 -40783 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 242.75-2 chr11 69883780 69884274 + 0.75 NA Intergenic Intergenic -64611 NM_005247 2248 Hs.37092 NM_005247 ENSG00000186895 FGF3 HBGF-3|INT2 fibroblast growth factor 3 protein-coding 187.5-36 chr2 117095287 117095669 + 0.75 NA Intergenic Intergenic -719213 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 233.75-12 chr2 206667489 206668075 + 0.75 NA intron (NM_001093730, intron 9 of 11) intron (NM_001093730, intron 9 of 11) 23555 NM_001102659 200726 NM_001102659 ENSG00000235118 FAM237A - family with sequence similarity 237 member A protein-coding 300.25-6 chr19 3522688 3523276 + 0.75 NA promoter-TSS (NM_001136197) promoter-TSS (NM_001136197) 26 NM_001136197 51343 Hs.413133 NM_016263 ENSG00000105325 FZR1 CDC20C|CDH1|FZR|FZR2|HCDH|HCDH1 fizzy and cell division cycle 20 related 1 protein-coding 264.75-17 chr7 9445947 9446567 + 0.75 NA Intergenic Arthur1|DNA|hAT-Tip100 -188013 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 165.5-99 chr8 142646080 142646359 + 0.75 NA Intergenic LTR8|LTR|ERV1 7623 NR_134305 101928087 Hs.126101 NR_134305 ENSG00000277332 LOC101928087 - uncharacterized LOC101928087 ncRNA 221.25-34 chr9 79238914 79239454 + 0.75 NA Intergenic Intergenic -93518 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 204-8 chr11 81870665 81871072 + 0.75 NA Intergenic Intergenic 19968 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 167.75-43 chr18 65392522 65392910 + 0.75 NA Intergenic Intergenic -357536 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 147.75-38 chr15 44366941 44367199 + 0.75 NA intron (NR_157849, intron 7 of 9) intron (NR_157849, intron 7 of 9) -60559 NM_016396 51496 Hs.497967 NM_016396 ENSG00000137770 CTDSPL2 HSPC058|HSPC129 CTD small phosphatase like 2 protein-coding 196.5-7 chr11 96102719 96103099 + 0.75 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -178702 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 172.5-74 chr7 25512019 25512514 + 0.75 NA Intergenic Intergenic 150874 NR_157828 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 176-59 chr6 41753193 41753588 + 0.75 NA Intergenic L1MC4a|LINE|L1 -5989 NM_001166424 5225 Hs.1867 NM_002630 ENSG00000096088 PGC PEPC|PGII progastricsin protein-coding 147-53 chr2 165056159 165056548 + 0.75 NA Intergenic LTR8B|LTR|ERV1 -100828 NM_173512 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 186.75-52 chr3 12308841 12309407 + 0.75 NA intron (NM_001354667, intron 1 of 6) MER103C|DNA|hAT-Charlie -3256 NM_001330615 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 307.5-11 chr7 107140561 107141067 + 0.75 NA intron (NM_002736, intron 4 of 10) intron (NM_002736, intron 4 of 10) -28147 NM_001244262 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 184.25-59 chr6 40544938 40545528 + 0.75 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 42131 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 187.5-54 chr4 145041198 145041611 + 0.75 NA intron (NM_001256710, intron 4 of 5) intron (NM_001256710, intron 4 of 5) 55978 NM_001318367 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 248.75-9 chr3 82282 82844 + 0.75 NA Intergenic L2c|LINE|L2 70812 NR_110824 102723448 Hs.543290 NR_110824 LINC01986 - long intergenic non-protein coding RNA 1986 ncRNA 207.75-14 chr14 53096547 53096929 + 0.75 NA intron (NM_030637, intron 2 of 11) intron (NM_030637, intron 2 of 11) 56585 NM_001160147 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 288.75-11 chr5 170757368 170758043 + 0.75 NA Intergenic MER53|DNA|hAT -26014 NM_001291985 2568 Hs.26225 NM_014211 ENSG00000094755 GABRP - gamma-aminobutyric acid type A receptor pi subunit protein-coding 248.75-3 chr10 15825597 15825984 + 0.75 NA intron (NM_024948, intron 8 of 14) intron (NM_024948, intron 8 of 14) 34717 NM_024948 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 255.5-4 chr10 89750719 89751156 + 0.75 NA intron (NM_016195, intron 23 of 32) intron (NM_016195, intron 23 of 32) 49347 NM_016195 9585 Hs.240 NM_016195 ENSG00000138182 KIF20B CT90|KRMP1|MPHOSPH1|MPP-1|MPP1 kinesin family member 20B protein-coding 189.5-58 chr5 168745317 168745684 + 0.75 NA intron (NM_003062, intron 20 of 35) AluSz|SINE|Alu 22755 NR_029632 407001 NR_029632 ENSG00000207739 MIR218-2 MIRN218-2|mir-218-2 microRNA 218-2 ncRNA 201.75-2 chr1 175806814 175807244 + 0.75 NA Intergenic MER110-int|LTR|ERV1 -63434 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 168.5-53 chr2 104246253 104246553 + 0.75 NA Intergenic Intergenic 161929 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 204.5-13 chr14 33963720 33964071 + 0.75 NA Intergenic Intergenic -12821 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 232.5-16 chr14 66561266 66561725 + 0.75 NA intron (NM_001024218, intron 1 of 21) intron (NM_001024218, intron 1 of 21) 54088 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 246.5-17 chr4 19849195 19849770 + 0.75 NA Intergenic L2a|LINE|L2 -402423 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 207.5-27 chr2 194201081 194201433 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL -143012 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 299.25 chr1 157603058 157603571 + 0.75 NA Intergenic MER115|DNA|hAT-Tip100 -5229 NM_031282 83417 Hs.120260 NM_031282 ENSG00000163518 FCRL4 CD307d|FCRH4|IGFP2|IRTA1 Fc receptor like 4 protein-coding 184.75-69 chr6 128590360 128590663 + 0.75 NA Intergenic L1MA1|LINE|L1 -69912 NM_001291983 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 209.5-33 chr2 200214961 200215481 + 0.75 NA Intergenic L5|LINE|RTE-X -90658 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 217.5-12 chr13 31816186 31816591 + 0.75 NA Intergenic L1M4c|LINE|L1 -30395 NR_027062 196549 Hs.507667 NM_145293 EEF1DP3 - eukaryotic translation elongation factor 1 delta pseudogene 3 pseudo 154.5-42 chr19 7752204 7752546 + 0.75 NA Intergenic MER66-int|LTR|ERV1 -4841 NM_001144896 30835 Hs.278694 NM_021155 ENSG00000090659 CD209 CDSIGN|CLEC4L|DC-SIGN|DC-SIGN1 CD209 molecule protein-coding 274.5-18 chr7 77864160 77864957 + 0.75 NA intron (NM_001366089, intron 2 of 18) intron (NM_001366089, intron 2 of 18) 24428 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 214.75-6 chr1 176497765 176498337 + 0.75 NA intron (NM_021936, intron 1 of 4) L3b|LINE|CR1 34876 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 208-33 chr6 120592470 120592835 + 0.75 NA Intergenic L1MD|LINE|L1 577473 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 303.75-11 chr8 139502038 139502624 + 0.75 NA Intergenic Intergenic 200792 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 170.25-40 chr3 3383053 3383314 + 0.75 NA Intergenic Intergenic -203466 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 267.75-17 chr8 55224950 55225358 + 0.75 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 123126 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 202-12 chr14 57316563 57316897 + 0.75 NA Intergenic Intergenic 47759 NR_026895 55745 Hs.597349 NM_018229 ENSG00000053770 AP5M1 C14orf108|MUDENG|Mu5|MuD adaptor related protein complex 5 subunit mu 1 protein-coding 167.5-84 chr6 62898819 62899325 + 0.75 NA Intergenic Intergenic 420905 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 172-71 chr5 175764020 175764307 + 0.75 NA Intergenic L1MD1|LINE|L1 -32370 NM_006650 10814 Hs.193235 NM_006650 ENSG00000145920 CPLX2 921-L|CPX-2|CPX2|Hfb1 complexin 2 protein-coding 264.25 chr1 165336778 165337365 + 0.75 NA intron (NM_177398, intron 3 of 8) intron (NM_177398, intron 3 of 8) 19170 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 173.5 chr1 60984433 60985013 + 0.75 NA Intergenic Intergenic -13947 NR_110617 100996570 Hs.46616 NR_110617 ENSG00000237928 NFIA-AS2 - NFIA antisense RNA 2 ncRNA 274.5-17 chr6 144198500 144198897 + 0.75 NA Intergenic THE1C|LTR|ERVL-MaLR 48181 NM_003764 8676 Hs.118958 NM_003764 ENSG00000135604 STX11 FHL4|HLH4|HPLH4 syntaxin 11 protein-coding 325 chr10 70574354 70574930 + 0.75 NA Intergenic AluSz|SINE|Alu 28099 NM_001083116 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 154-88 chr5 100263279 100263673 + 0.75 NA Intergenic Intergenic 124778 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 207.75-46 chr7 133084590 133084922 + 0.75 NA Intergenic Intergenic -2598 NM_001317178 54927 Hs.655010 NM_017812 ENSG00000106554 CHCHD3 MICOS19|MINOS3|Mic19|PPP1R22 coiled-coil-helix-coiled-coil-helix domain containing 3 protein-coding 154.75-21 chr14 39619055 39619504 + 0.75 NA Intergenic Intergenic -186779 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 194.75-46 chr7 40904076 40904526 + 0.75 NA Intergenic Intergenic 75638 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 173.5-93 chrX 38961975 38962330 + 0.75 NA Intergenic L1PA17|LINE|L1 -158269 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 163.75-61 chr5 100246523 100246831 + 0.75 NA Intergenic L1MEg|LINE|L1 141577 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 152.5-102 chr7 39287069 39287538 + 0.75 NA intron (NM_001370959, intron 4 of 9) L3|LINE|CR1 41831 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 369.75-4 chr14 83406209 83406873 + 0.75 NA Intergenic Intergenic 763909 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 227.75-17 chr2 118344688 118345209 + 0.75 NA Intergenic AluJr|SINE|Alu -158562 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 205.25-20 chr20 1241548 1241954 + 0.75 NA intron (NM_001136566, intron 8 of 13) intron (NM_001136566, intron 8 of 13) 15631 NM_001136566 642636 Hs.713451 NM_001136566 ENSG00000244588 RAD21L1 RAD21L|dJ545L17.2 RAD21 cohesin complex component like 1 protein-coding 185.75-56 chr4 66743877 66744321 + 0.75 NA Intergenic L1MEc|LINE|L1 467275 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 199.25-73 chrX 100442141 100442768 + 0.75 NA Intergenic L1ME3G|LINE|L1 -32181 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 352-2 chr2 23925354 23926093 + 0.75 NA intron (NR_125717, intron 1 of 28) intron (NR_125717, intron 1 of 28) 1400 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 161.75-79 chr5 128357037 128357454 + 0.75 NA intron (NM_001999, intron 20 of 64) intron (NM_001999, intron 20 of 64) 181000 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 195.25-2 chr10 49599697 49600127 + 0.75 NA Intergenic Intergenic -9183 NM_020984 1103 Hs.302002 NM_020549 ENSG00000070748 CHAT CHOACTASE|CMS1A|CMS1A2|CMS6 choline O-acetyltransferase protein-coding 198.25-24 chr20 935459 935801 + 0.75 NA Intergenic Intergenic -19296 NM_001322809 51378 Hs.278973 NM_015985 ENSG00000101280 ANGPT4 ANG3|ANG4 angiopoietin 4 protein-coding 192.25-47 chr4 71133855 71134264 + 0.75 NA Intergenic Intergenic -53200 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 284.25 chr11 35960916 35961655 + 0.75 NA intron (NM_001304264, intron 1 of 5) intron (NM_001304264, intron 1 of 5) 17223 NM_174902 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 189.75-18 chr10 89039481 89039829 + 0.75 NA Intergenic L1MA3|LINE|L1 -23681 NR_039826 100616128 NR_039826 ENSG00000283664 MIR4679-1 - microRNA 4679-1 ncRNA 183-54 chr8 98664251 98664621 + 0.75 NA intron (NM_001256313, intron 4 of 8) MIRc|SINE|MIR 161235 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 171.5-90 chr6 156870978 156871342 + 0.75 NA intron (NM_017519, intron 2 of 18) intron (NM_017519, intron 2 of 18) -91429 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA 304.75 chr17 69972385 69972811 + 0.75 NA intron (NR_110875, intron 2 of 4) intron (NR_110875, intron 2 of 4) 10891 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 212-37 chr7 15225387 15225841 + 0.75 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) -250756 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 215.25-27 chr3 117308561 117309071 + 0.75 NA Intergenic Intergenic 382109 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 207.5-26 chr2 172437109 172437533 + 0.75 NA intron (NM_001365530, intron 1 of 25) L2a|LINE|L2 9735 NM_001079818 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 148-7 chr1 164818286 164818713 + 0.75 NA intron (NM_001204961, intron 6 of 7) intron (NM_001204961, intron 6 of 7) -43858 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 164.5-80 chr6 90126401 90126724 + 0.75 NA intron (NM_021813, intron 4 of 8) intron (NM_021813, intron 4 of 8) 170281 NM_021813 60468 Hs.269764 NM_021813 ENSG00000112182 BACH2 BTBD25|IMD60 BTB domain and CNC homolog 2 protein-coding 172-65 chr5 20638154 20638420 + 0.75 NA intron (NR_149120, intron 1 of 11) L1MA4A|LINE|L1 -22752 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 200-19 chr14 56211994 56212319 + 0.75 NA intron (NM_021255, intron 2 of 5) intron (NM_021255, intron 2 of 5) 93745 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 287.25-7 chr4 48655706 48656226 + 0.75 NA intron (NM_015030, intron 3 of 63) (AT)n|Simple_repeat|Simple_repeat 124333 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 454.5 chr10 41777499 41778473 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 590059 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 154.5-81 chr6 45680607 45681001 + 0.75 NA Intergenic L1MB3|LINE|L1 256793 NR_045674 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 245.25-18 chr3 148295690 148296154 + 0.75 NA intron (NR_146712, intron 2 of 4) intron (NR_146712, intron 2 of 4) 15031 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 222.25-19 chr2 21656709 21657159 + 0.75 NA Intergenic Intergenic 53718 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 210-47 chr6 47879847 47880344 + 0.75 NA intron (NM_001013732, intron 2 of 2) intron (NM_001013732, intron 2 of 2) 93027 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 210.5-23 chr2 178223257 178223754 + 0.75 NA intron (NM_001201480, intron 1 of 25) intron (NM_001201480, intron 1 of 25) 28993 NM_001201480 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 166-63 chr6 135424330 135424792 + 0.75 NA intron (NM_017651, intron 19 of 27) intron (NM_017651, intron 19 of 27) 73179 NM_001134831 54806 Hs.386684 NM_017651 ENSG00000135541 AHI1 AHI-1|JBTS3|ORF1|dJ71N10.1 Abelson helper integration site 1 protein-coding 255.75 chr1 88806353 88806799 + 0.75 NA intron (NM_006256, intron 12 of 21) intron (NM_006256, intron 12 of 21) 84991 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 187.5-28 chr18 74362214 74362482 + 0.75 NA Intergenic Intergenic 46509 NM_001174123 644041 Hs.465414 NM_001174123 ENSG00000206043 C18orf63 DKFZP781G0119 chromosome 18 open reading frame 63 protein-coding 173-50 chr3 184890591 184891079 + 0.75 NA intron (NM_001009921, intron 21 of 46) intron (NM_001009921, intron 21 of 46) 78328 NR_146115 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 166.75-6 chr1 231424960 231425237 + 0.75 NA promoter-TSS (NM_022051) promoter-TSS (NM_022051) -54 NM_022051 54583 Hs.444450 NM_022051 ENSG00000135766 EGLN1 C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6 egl-9 family hypoxia inducible factor 1 protein-coding 170.75-47 chr4 42939081 42939490 + 0.75 NA intron (NM_001080476, intron 1 of 3) L1MA3|LINE|L1 46019 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 228.25-34 chr8 111591622 111591974 + 0.75 NA Intergenic Intergenic 215159 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 190-58 chr6 65567281 65567805 + 0.75 NA intron (NM_001292009, intron 2 of 43) LTR37B|LTR|ERV1 12261 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 169.5-91 chr8 77228527 77229101 + 0.75 NA Intergenic Intergenic -221883 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 175-49 chr7 3694852 3695211 + 0.75 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) 393779 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 217-27 chr8 107989343 107989740 + 0.75 NA intron (NM_178565, intron 2 of 5) intron (NM_178565, intron 2 of 5) 92398 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 285.25-5 chr4 121008029 121008824 + 0.75 NA Intergenic Intergenic 64109 NM_024574 79625 Hs.709520 NM_024574 ENSG00000173376 NDNF C4orf31|NORD neuron derived neurotrophic factor protein-coding 240-4 chr10 99319263 99319951 + 0.75 NA Intergenic L2a|LINE|L2 -9492 NM_001345888 26507 Hs.274579 NM_020348 ENSG00000119946 CNNM1 ACDP1|CLP-1 cyclin and CBS domain divalent metal cation transport mediator 1 protein-coding 163.25-15 chr10 74179558 74179911 + 0.75 NA intron (NM_001369124, intron 1 of 9) MER41B|LTR|ERV1 2971 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 226.75-11 chr18 64921530 64921977 + 0.75 NA Intergenic Intergenic -661698 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 228.5-26 chr19 37404650 37405127 + 0.75 NA Intergenic L1ME3C|LINE|L1 33789 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 164-19 chr15 49630076 49630476 + 0.75 NA intron (NM_020234, intron 3 of 5) L1ME1|LINE|L1 9228 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 147.25-61 chr3 171513666 171513962 + 0.75 NA Intergenic Charlie18a|DNA|hAT-Charlie -53406 NR_027767 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 226.25-19 chr4 31943074 31943478 + 0.75 NA Intergenic Intergenic -54103 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 180.75-59 chr7 29877590 29877864 + 0.75 NA intron (NM_001080529, intron 3 of 8) Tigger4|DNA|TcMar-Tigger 71173 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 183.75-18 chr11 102333665 102334086 + 0.75 NA intron (NM_182962, intron 7 of 9) AluJo|SINE|Alu -13307 NM_001166 329 Hs.696238 NM_001166 ENSG00000110330 BIRC2 API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1 baculoviral IAP repeat containing 2 protein-coding 185.5-71 chr8 84504729 84504997 + 0.75 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 89379 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 199.75-12 chr12 3670653 3671077 + 0.75 NA intron (NM_001144958, intron 7 of 19) intron (NM_001144958, intron 7 of 19) 82244 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 234.75-27 chr9 23051870 23052461 + 0.75 NA Intergenic L1M4|LINE|L1 405965 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 150.5-122 chr8 129908866 129909157 + 0.75 NA intron (NM_001353246, intron 1 of 12) AluJr|SINE|Alu 30800 NM_001353295 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 147.5-65 chr3 154662093 154662369 + 0.75 NA Intergenic L2|LINE|L2 -232041 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 188.25-7 chr11 21189566 21190038 + 0.75 NA intron (NM_201551, intron 13 of 18) intron (NM_201551, intron 13 of 18) 520216 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 261.75-5 chr10 75823981 75824449 + 0.75 NA intron (NM_032024, intron 1 of 5) MER33|DNA|hAT-Charlie 41454 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 221-18 chr2 147855037 147855503 + 0.75 NA intron (NM_001278579, intron 2 of 11) L2a|LINE|L2 10241 NM_001616 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 324-3 chr3 17457214 17458051 + 0.75 NA intron (NM_014744, intron 3 of 21) L1MCa|LINE|L1 242388 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 197-33 chr4 164766717 164767200 + 0.75 NA intron (NM_001352885, intron 1 of 2) L2a|LINE|L2 12827 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 215.25-50 chr8 138524618 138525066 + 0.75 NA Intergenic Intergenic -27112 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 170.25-31 chr2 162219031 162219559 + 0.75 NA intron (NM_004460, intron 7 of 25) intron (NM_004460, intron 7 of 25) 24150 NM_004460 2191 Hs.654370 NM_004460 ENSG00000078098 FAP DPPIV|FAPA|FAPalpha|SIMP fibroblast activation protein alpha protein-coding 208.5-47 chr4 74806172 74806546 + 0.75 NA Intergenic L3|LINE|CR1 -11836 NM_001729 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 256.75-18 chr4 74389669 74390059 + 0.75 NA Intergenic Intergenic 24719 NM_001432 2069 Hs.115263 NM_001432 ENSG00000124882 EREG EPR|ER|Ep epiregulin protein-coding 186.5-7 chr1 215201363 215201744 + 0.75 NA intron (NM_001017424, intron 6 of 6) intron (NM_001017424, intron 6 of 6) 118816 NM_014217 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 157-5 chr1 117584379 117584631 + 0.75 NA Intergenic (TGTGTG)n|Simple_repeat|Simple_repeat 21265 NR_121626 100996263 Hs.202533 NR_121626 ENSG00000236866 LOC100996263 - uncharacterized LOC100996263 ncRNA 182.25-36 chr3 84625966 84626528 + 0.75 NA Intergenic Intergenic 243328 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 151.5-4 chr1 105185236 105185590 + 0.75 NA Intergenic Intergenic 433522 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 198.25-50 chr6 102390639 102391099 + 0.75 NA Intergenic L1PBa|LINE|L1 991884 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 384.75-2 chr18 73161560 73162589 + 0.75 NA intron (NR_034133, intron 3 of 5) intron (NR_034133, intron 3 of 5) 102424 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 274.75-4 chr12 51974177 51974716 + 0.75 NA intron (NM_020327, intron 1 of 8) intron (NM_020327, intron 1 of 8) 21066 NM_020327 91 Hs.438918 NM_004302 ENSG00000135503 ACVR1B ACTRIB|ACVRLK4|ALK4|SKR2 activin A receptor type 1B protein-coding 157-17 chr10 110038204 110038595 + 0.75 NA intron (NM_001121, intron 1 of 13) MLT1J2|LTR|ERVL-MaLR -30018 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 381.25-2 chr4 98768189 98768962 + 0.75 NA Intergenic Charlie25|DNA|hAT-Charlie 109673 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 206.5-20 chr2 45837519 45837992 + 0.75 NA intron (NM_005400, intron 1 of 14) AluJr|SINE|Alu 186080 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 203-15 chr17 70850881 70851399 + 0.75 NA Intergenic L1PB4|LINE|L1 351039 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 272.75-18 chr7 92054900 92055552 + 0.75 NA intron (NM_147185, intron 22 of 49) intron (NM_147185, intron 22 of 49) 79251 NM_000786 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 249.25-2 chr1 150149225 150149788 + 0.75 NA promoter-TSS (NM_001304722) promoter-TSS (NM_001304722) 72 NM_001304724 51177 Hs.438824 NM_016274 ENSG00000023902 PLEKHO1 CKIP-1|CKIP1|JBP|OC120 pleckstrin homology domain containing O1 protein-coding 157.75-75 chr4 91156419 91156741 + 0.75 NA intron (NM_001145065, intron 10 of 10) (AATTA)n|Simple_repeat|Simple_repeat 921549 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 196.25-35 chr2 180631424 180631690 + 0.75 NA Intergenic Zaphod|DNA|hAT-Tip100 -60547 NR_104324 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 196.5-5 chr10 61531152 61531578 + 0.75 NA Intergenic L1MA3|LINE|L1 51324 NR_120645 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 233.75-33 chr7 97402380 97403073 + 0.75 NA Intergenic Intergenic 286133 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 177.75-7 chr1 110047410 110047938 + 0.75 NA intron (NR_073071, intron 15 of 21) intron (NR_073071, intron 15 of 21) 13050 NM_033088 85369 Hs.584996 NM_033088 ENSG00000143093 STRIP1 FAM40A|FAR11A striatin interacting protein 1 protein-coding 198.5-57 chr8 117393247 117393717 + 0.75 NA Intergenic L1MC4|LINE|L1 -127231 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 189.75-36 chr19 51012638 51013004 + 0.75 NA TTS (NM_002776) TTS (NM_002776) -3229 NM_012315 284366 NM_012315 ENSG00000213022 KLK9 KLK-L3|KLKL3 kallikrein related peptidase 9 protein-coding 195-15 chr13 88823847 88824274 + 0.75 NA Intergenic Intergenic 197207 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 207.5-29 chr3 162737281 162737771 + 0.75 NA Intergenic Intergenic 565775 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 165.75-110 chr8 118957364 118957743 + 0.75 NA intron (NM_001324095, intron 1 of 7) L2a|LINE|L2 5290 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 187.5-44 chr3 100924027 100924428 + 0.75 NA intron (NM_001349332, intron 2 of 35) L1MC5a|LINE|L1 69263 NM_001349331 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 196.5-14 chr12 94543909 94544285 + 0.75 NA Intergenic Charlie8|DNA|hAT-Charlie -17692 NR_049885 100847031 NR_049885 ENSG00000266099 MIR5700 - microRNA 5700 ncRNA 163.25 chr1 5819874 5820266 + 0.75 NA Intergenic MLT1H|LTR|ERVL-MaLR 42671 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 165-71 chr5 174198504 174198813 + 0.75 NA Intergenic MIRb|SINE|MIR -137696 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 202-31 chr3 31474325 31474802 + 0.75 NA Intergenic Intergenic -58362 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 243.5-27 chr9 109420432 109420953 + 0.75 NA intron (NM_001145368, intron 12 of 24) intron (NM_001145368, intron 12 of 24) -2909 NR_026918 5774 Hs.436429 NM_002829 ENSG00000070159 PTPN3 PTP-H1|PTPH1 protein tyrosine phosphatase non-receptor type 3 protein-coding 200.75-19 chr15 86711673 86712050 + 0.75 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -221019 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 291-4 chr2 31831100 31831823 + 0.75 NA Intergenic L1M4|LINE|L1 -27481 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 168.75-95 chr7 108467134 108467586 + 0.75 NA Intergenic Intergenic -10640 NM_001371123 220.25-15 chr17 63468987 63469505 + 0.75 NA Intergenic Charlie5|DNA|hAT-Charlie -7815 NM_000789 1636 Hs.298469 NM_000789 ENSG00000159640 ACE ACE1|CD143|DCP|DCP1 angiotensin I converting enzyme protein-coding 173.25-11 chr11 82099427 82099839 + 0.75 NA intron (NR_120571, intron 4 of 7) intron (NR_120571, intron 4 of 7) -208797 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 146-9 chr10 11744688 11744952 + 0.75 NA intron (NM_024693, intron 1 of 4) L2|LINE|L2 2438 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 172-63 chr4 159029970 159030295 + 0.75 NA intron (NM_152543, intron 1 of 4) AluJb|SINE|Alu 5097 NM_152543 152940 Hs.415576 NM_152543 ENSG00000164123 C4orf45 - chromosome 4 open reading frame 45 protein-coding 204.75-62 chr9 124456637 124457212 + 0.75 NA Intergenic L2c|LINE|L2 -41482 NM_002799 5695 Hs.213470 NM_002799 ENSG00000136930 PSMB7 Z proteasome subunit beta 7 protein-coding 188-17 chr11 98500606 98500977 + 0.75 NA Intergenic HAL1|LINE|L1 -520158 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 209.75-38 chr8 25823328 25823841 + 0.75 NA Intergenic Intergenic 221829 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 187.5-5 chr1 154629411 154629794 + 0.75 NA Intergenic LTR55|LTR|ERVL? -1605 NM_001365046 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase RNA specific protein-coding 194-20 chr13 83740019 83740465 + 0.75 NA Intergenic Intergenic 142151 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 262.25-13 chr5 61991458 61992139 + 0.75 NA Intergenic Intergenic -256100 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 245.5-32 chr7 480803 481209 + 0.75 NA Intergenic Intergenic 38838 NM_033023 5154 Hs.535898 NM_002607 ENSG00000197461 PDGFA PDGF-A|PDGF1 platelet derived growth factor subunit A protein-coding 227.5-2 chr1 111629524 111630189 + 0.75 NA intron (NM_001010935, intron 2 of 8) intron (NM_001010935, intron 2 of 8) -9458 NR_160737 107985184 NR_160737 LOC107985184 - uncharacterized LOC107985184 ncRNA 192.75-61 chr7 46157100 46157476 + 0.75 NA Intergenic L1MA7|LINE|L1 -236016 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 233.25-32 chr8 79793231 79793656 + 0.75 NA intron (NR_125410, intron 3 of 3) intron (NR_125410, intron 3 of 3) 25301 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 149.75-100 chr8 100505073 100505333 + 0.75 NA Intergenic L1ME1|LINE|L1 54556 NM_001270379 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 228-3 chr10 16807510 16807931 + 0.75 NA intron (NM_152724, intron 1 of 7) intron (NM_152724, intron 1 of 7) 9704 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 259.25-14 chr8 127368427 127369124 + 0.75 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -31624 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 182.25-17 chr2 12939685 12939983 + 0.75 NA Intergenic L1ME3|LINE|L1 67179 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 193.5-41 chr2 226669240 226669551 + 0.75 NA Intergenic L2a|LINE|L2 -10602 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 240.5-3 chr1 192083643 192084169 + 0.75 NA Intergenic L2a|LINE|L2 -74556 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 200.5-55 chr6 164765641 164766088 + 0.75 NA Intergenic Intergenic 56199 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 163-80 chr8 6125308 6125611 + 0.75 NA Intergenic Intergenic 281089 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 215-7 chr16 59639710 59640339 + 0.75 NA Intergenic Intergenic 115167 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 289.75-12 chr2 41081120 41081675 + 0.75 NA Intergenic Intergenic -568962 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 171.5-51 chr2 136482676 136482943 + 0.75 NA Intergenic Intergenic -282736 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 258.5-6 chr12 79899695 79900251 + 0.75 NA intron (NM_001244990, intron 2 of 24) L2c|LINE|L2 13938 NM_001143886 4659 Hs.49582 NM_002480 ENSG00000058272 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1 regulatory subunit 12A protein-coding 260.5-7 chr2 188052763 188053227 + 0.75 NA intron (NR_126396, intron 2 of 2) L1MEf|LINE|L1 234696 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 189-29 chr2 72488494 72488791 + 0.75 NA intron (NR_135774, intron 16 of 19) L2a|LINE|L2 337391 NM_001321730 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 178.25-53 chr5 15593223 15593559 + 0.75 NA intron (NM_001278317, intron 1 of 3) AluSx1|SINE|Alu 21611 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 171.5-22 chr11 105500847 105501229 + 0.75 NA Intergenic L1MC|LINE|L1 -109035 NM_001077243 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 200.5-26 chr18 12089158 12089661 + 0.75 NA Intergenic (CCTGGC)n|Simple_repeat|Simple_repeat -4434 NM_001277333 342850 Hs.448906 NM_001277333 ENSG00000181626 ANKRD62 DKFZp779B1634 ankyrin repeat domain 62 protein-coding 356.75-2 chr20 5245843 5246757 + 0.75 NA Intergenic L1PB2|LINE|L1 70432 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 204.75-49 chr6 147112471 147112922 + 0.75 NA intron (NR_034115, intron 4 of 10) intron (NR_034115, intron 4 of 10) -46229 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 147.5-22 chr12 108432641 108433050 + 0.75 NA Intergenic Intergenic 40844 NR_120483 102723562 Hs.455693 NR_120483 ENSG00000247213 LINC01498 - long intergenic non-protein coding RNA 1498 ncRNA 164.25-35 chr16 62931593 62932001 + 0.75 NA Intergenic Intergenic -895359 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 176.5-76 chr6 167457499 167457811 + 0.75 NA Intergenic Intergenic 15135 NR_134591 105378127 Hs.58456 NR_134591 LOC105378127 - uncharacterized LOC105378127 ncRNA 208.5-56 chr8 84043280 84043678 + 0.75 NA Intergenic (CATTC)n|Simple_repeat|Simple_repeat -139308 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 181.75-17 chr12 8136984 8137497 + 0.75 NA intron (NM_194447, intron 4 of 4) intron (NM_194447, intron 4 of 4) -2388 NR_036440 642559 Hs.646545 NR_036440 ENSG00000235602 POU5F1P3 OCT3|OCT4|OCT4-pg3|OTF-3|OTF3|OTF3L|Oct-3|Oct-4|POU5F1|POU5F1L|POU5FLC12 POU class 5 homeobox 1 pseudogene 3 pseudo 156.25-71 chr5 57161169 57161544 + 0.75 NA Intergenic Intergenic -12592 NM_001331037 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 240.5-19 chr3 150339437 150339784 + 0.75 NA Intergenic L1ME1|LINE|L1 -15863 NR_110187 101928022 Hs.555199 NR_110186 LINC01214 - long intergenic non-protein coding RNA 1214 ncRNA 198.25-45 chr5 109787228 109787656 + 0.75 NA intron (NM_002372, intron 10 of 21) MER103C|DNA|hAT-Charlie -95740 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 176.75-88 chr7 108822686 108822954 + 0.75 NA Intergenic L2|LINE|L2 61767 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 310.75-2 chr11 36292037 36292831 + 0.75 NA Intergenic MIRc|SINE|MIR -3010 NM_001307932 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 177.25-6 chr1 215283359 215283894 + 0.75 NA Intergenic L1MC5|LINE|L1 200889 NM_014217 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 309.5-2 chr16 75834874 75835643 + 0.75 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -108768 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 186.5-33 chr20 24729058 24729557 + 0.75 NA Intergenic Intergenic -219962 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 211-6 chr1 186285427 186285803 + 0.75 NA Intergenic Intergenic -10658 NM_001127710 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 258.75-13 chr2 194368276 194368685 + 0.75 NA intron (NR_110222, intron 1 of 5) L1MC4a|LINE|L1 24211 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 188-42 chr3 115492231 115492716 + 0.75 NA Intergenic Intergenic -131037 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 245-9 chr18 3164019 3164627 + 0.75 NA exon (NM_003803, exon 10 of 38) exon (NM_003803, exon 10 of 38) 55645 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 198.75-39 chr4 182468890 182469336 + 0.75 NA intron (NM_001080477, intron 3 of 27) intron (NM_001080477, intron 3 of 27) 225711 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 213.25-31 chr3 165673297 165673654 + 0.75 NA Intergenic L1MA9|LINE|L1 163948 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 170.75-22 chr15 51338408 51338904 + 0.75 NA promoter-TSS (NM_031226) promoter-TSS (NM_031226) -60 NM_031226 1588 Hs.260074 NM_000103 ENSG00000137869 CYP19A1 ARO|ARO1|CPV1|CYAR|CYP19|CYPXIX|P-450AROM cytochrome P450 family 19 subfamily A member 1 protein-coding 246.75-7 chr18 1487316 1487818 + 0.75 NA Intergenic Intergenic -127938 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 219.25-52 chr9 28419883 28420332 + 0.75 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 299198 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 209-29 chr22 31487004 31487381 + 0.75 NA intron (NM_001164502, intron 2 of 16) intron (NM_001164502, intron 2 of 16) 2364 NM_001164501 56478 Hs.517559 NM_019843 ENSG00000184708 EIF4ENIF1 4E-T|Clast4 eukaryotic translation initiation factor 4E nuclear import factor 1 protein-coding 180.5-63 chr6 83662336 83662765 + 0.75 NA intron (NM_001256718, intron 2 of 27) intron (NM_001256718, intron 2 of 27) 46009 NM_001363677 9892 Hs.368046 NM_014841 ENSG00000065609 SNAP91 AP180|CALM synaptosome associated protein 91 protein-coding 192.25-6 chr10 18879190 18879626 + 0.75 NA Intergenic MLT2B4|LTR|ERVL -169393 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 164.5-56 chr3 178299641 178299973 + 0.75 NA Intergenic Intergenic -119394 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 153.25-113 chr8 117185404 117185636 + 0.75 NA Intergenic Intergenic 50525 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 256.5-4 chr17 56517668 56518356 + 0.75 NA TTS (NM_001365758) TTS (NM_001365758) -75687 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 194.5-47 chr5 28718439 28718964 + 0.75 NA Intergenic Intergenic -208169 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 180.25-24 chr17 63159312 63159843 + 0.75 NA intron (NM_025185, intron 4 of 25) MER2|DNA|TcMar-Tigger 193342 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 327.75-7 chr5 24410234 24410964 + 0.75 NA Intergenic Intergenic 234379 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 187.25-50 chr5 62969906 62970194 + 0.75 NA Intergenic L1PB1|LINE|L1 391231 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 163.5-76 chr3 132144573 132144855 + 0.75 NA Intergenic AluSx4|SINE|Alu -105108 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 239.25-8 chr13 56355632 56356268 + 0.75 NA Intergenic Intergenic -784968 NM_001130407 729250 Hs.525056 NM_001130407 ENSG00000234278 PRR20E PRR20|PRR20A|PRR20B|PRR20C|PRR20D proline rich 20E protein-coding 155-64 chr3 156733461 156733690 + 0.75 NA Intergenic L1PA16|LINE|L1 56911 NM_001184718 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 387.25 chr10 74467061 74467859 + 0.75 NA intron (NM_001369124, intron 6 of 9) intron (NM_001369124, intron 6 of 9) 61864 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 147-48 chr2 73556568 73556786 + 0.75 NA intron (NM_015120, intron 13 of 22) intron (NM_015120, intron 13 of 22) 85745 NM_003960 9027 Hs.14637 NM_003960 ENSG00000144035 NAT8 ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510 N-acetyltransferase 8 (putative) protein-coding 162.5-34 chr17 54990551 54990884 + 0.75 NA intron (NM_178509, intron 3 of 17) MER1A|DNA|hAT-Charlie -21932 NM_001321518 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 172-7 chr1 178895343 178895871 + 0.75 NA intron (NM_152663, intron 16 of 19) intron (NM_152663, intron 16 of 19) -24530 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 197.5-2 chr1 86039768 86040309 + 0.75 NA intron (NM_152890, intron 12 of 59) intron (NM_152890, intron 12 of 59) 116433 NR_146344 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 156.25-50 chr21 7950470 7950804 + 0.75 NA Intergenic (CATTC)n|Satellite|Satellite -121005 NM_001369869 102723475 NM_001330065 ENSG00000276289 KCNE1B - potassium voltage-gated channel subfamily E regulatory subunit 1B protein-coding 146.25-60 chr3 78530508 78530951 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR -481766 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 226 chr1 189214533 189214948 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger 1261270 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 327-4 chr7 64931068 64931864 + 0.75 NA non-coding (NR_003099, exon 5 of 5) non-coding (NR_003099, exon 5 of 5) 28224 NR_003099 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 212-13 chr15 27393289 27393770 + 0.75 NA intron (NM_001270873, intron 5 of 5) L1MC3|LINE|L1 -232210 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 293-6 chr22 26672468 26673059 + 0.75 NA promoter-TSS (NR_110543) promoter-TSS (NR_110543) -80 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 192.5-57 chr7 83466722 83467139 + 0.75 NA intron (NM_001178129, intron 3 of 16) intron (NM_001178129, intron 3 of 16) 174501 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 220.75-13 chr15 100289552 100290170 + 0.75 NA intron (NM_139057, intron 3 of 21) L1PA15|LINE|L1 52114 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 152-97 chr8 123600753 123601146 + 0.75 NA Intergenic Intergenic 52852 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 156.5-12 chr1 147478857 147479111 + 0.75 NA intron (NR_038423, intron 3 of 3) intron (NR_038423, intron 3 of 3) 38891 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 192.5-19 chr16 60458993 60459426 + 0.75 NA Intergenic AluSx1|SINE|Alu -99416 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 156.5-15 chr1 228894210 228894674 + 0.75 NA Intergenic Intergenic 158963 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 178-47 chr4 39266633 39266967 + 0.75 NA intron (NM_025132, intron 29 of 36) intron (NM_025132, intron 29 of 36) 84271 NM_001317924 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 211.25-3 chr10 18260413 18260794 + 0.75 NA promoter-TSS (NM_001330060) promoter-TSS (NM_001330060) -119 NM_000724 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 228-13 chr2 21487359 21487744 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger 223101 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 233.75-36 chrX 41001502 41002107 + 0.75 NA Intergenic LTR16A|LTR|ERVL -83641 NM_001039591 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9 X-linked protein-coding 243.5-8 chr14 27906394 27906865 + 0.75 NA Intergenic Intergenic -233408 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 202-44 chr6 49364004 49364445 + 0.75 NA Intergenic Intergenic 99029 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 149.5-40 chr2 30659186 30659430 + 0.75 NA Intergenic Intergenic 148138 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 152.25-7 chr1 112676991 112677291 + 0.75 NA intron (NM_001321324, intron 2 of 20) intron (NM_001321324, intron 2 of 20) 2403 NM_001369507 4343 Hs.514941 NM_020963 ENSG00000155363 MOV10 fSAP113|gb110 Mov10 RISC complex RNA helicase protein-coding 168.25-13 chr12 92234461 92234702 + 0.75 NA Intergenic ORSL|DNA|hAT-Tip100 88496 NR_135036 101928617 Hs.434392 NR_135036 LOC101928617 - uncharacterized LOC101928617 ncRNA 191-49 chr7 140467698 140468130 + 0.75 NA intron (NM_013446, intron 2 of 7) AluSp|SINE|Alu 11591 NM_013446 23608 Hs.744883 NM_013446 ENSG00000133606 MKRN1 RNF61 makorin ring finger protein 1 protein-coding 183-60 chr9 71092596 71093006 + 0.75 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 28820 NM_001366145 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 172.5-5 chr1 237329731 237330222 + 0.75 NA intron (NM_001035, intron 2 of 104) intron (NM_001035, intron 2 of 104) -141143 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 163.5-51 chr18 62196465 62196917 + 0.75 NA intron (NR_144409, intron 1 of 31) intron (NR_144409, intron 1 of 31) 9436 NM_001346235 57614 Hs.465323 NM_020854 ENSG00000134444 RELCH HsT3308|HsT885|KIAA1468 RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing protein-coding 243-3 chr10 121049731 121050358 + 0.75 NA Intergenic Intergenic 198682 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 284.75-7 chr21 33131387 33131904 + 0.75 NA Intergenic Intergenic -7945 NR_109961 101928107 Hs.382669 NR_109961 ENSG00000226527 LOC101928107 - uncharacterized LOC101928107 ncRNA 201.5-45 chr4 64541975 64542339 + 0.75 NA Intergenic MER101|LTR|ERV1 -132697 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 260-4 chr2 222571078 222571511 + 0.75 NA non-coding (NR_130154, exon 18 of 18) non-coding (NR_130154, exon 18 of 18) 84798 NM_005687 10056 Hs.471452 NM_005687 ENSG00000116120 FARSB FARSLB|FRSB|HSPC173|NEDBLLA|PheHB|PheRS|RILDBC phenylalanyl-tRNA synthetase subunit beta protein-coding 252.75-18 chr2 197983495 197984006 + 0.75 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 179157 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 148-43 chr19 45164715 45165188 + 0.75 NA exon (NM_001270892, exon 2 of 5) exon (NM_001270892, exon 2 of 5) -4801 NM_198478 284353 Hs.299256 NM_198478 NKPD1 - NTPase KAP family P-loop domain containing 1 protein-coding 237.5-36 chr9 105847575 105848084 + 0.75 NA Intergenic A-rich|Low_complexity|Low_complexity 153288 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 210.25-33 chr5 32245847 32246288 + 0.75 NA intron (NM_001294344, intron 10 of 13) HSMAR2|DNA|TcMar-Mariner 66872 NM_001294344 54545 Hs.481836 NM_019061 ENSG00000150712 MTMR12 3-PAP|PIP3AP myotubularin related protein 12 protein-coding 151-55 chr22 29103553 29103859 + 0.75 NA intron (NM_001039570, intron 3 of 8) intron (NM_001039570, intron 3 of 8) 30671 NM_001039570 83999 Hs.229335 NM_032045 ENSG00000183762 KREMEN1 ECTD13|KREMEN|KRM1 kringle containing transmembrane protein 1 protein-coding 241.5-20 chr4 96687640 96688274 + 0.75 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 377254 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 207-49 chr8 59693073 59693576 + 0.75 NA Intergenic Intergenic 574114 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 195.25-32 chr20 18204037 18204480 + 0.75 NA Intergenic L1M4|LINE|L1 59159 NR_028402 57325 Hs.488051 NM_020536 ENSG00000149474 KAT14 ATAC2|CRP2BP|CSRP2BP|PRO1194|dJ717M23.1 lysine acetyltransferase 14 protein-coding 156.5-68 chr4 19066627 19067039 + 0.75 NA Intergenic L1ME1|LINE|L1 -1044958 NM_001365659 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 168.5-71 chr3 188307935 188308262 + 0.75 NA intron (NM_005578, intron 2 of 10) intron (NM_005578, intron 2 of 10) 82693 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 172.25-14 chr12 9096794 9097069 + 0.75 NA intron (NM_000014, intron 15 of 35) L2a|LINE|L2 19298 NM_001347424 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 191-23 chr14 45522208 45522744 + 0.75 NA Intergenic Intergenic 193126 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 268.25-3 chr1 163202107 163202523 + 0.75 NA intron (NM_001254748, intron 2 of 5) MIR|SINE|MIR 601 NM_003617 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 146.75-59 chr2 187247144 187247598 + 0.75 NA Intergenic L1M4|LINE|L1 200881 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 223.5-17 chr15 69473643 69474240 + 0.75 NA Intergenic MER33|DNA|hAT-Charlie 21123 NM_001003 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 208.5-18 chr14 40246526 40246865 + 0.75 NA Intergenic L1MA5A|LINE|L1 -708016 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 191.5-24 chr16 61637422 61637752 + 0.75 NA Intergenic MER91A|DNA|hAT-Tip100 398851 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 191.75-67 chr8 134604628 134605062 + 0.75 NA intron (NM_020863, intron 5 of 15) intron (NM_020863, intron 5 of 15) 6774 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 223.75-21 chr5 6096941 6097327 + 0.75 NA Intergenic L1ME1|LINE|L1 240158 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 167.25-6 chr10 34456420 34456892 + 0.75 NA intron (NM_001184789, intron 4 of 22) intron (NM_001184789, intron 4 of 22) 358640 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 149-59 chr22 45840412 45840743 + 0.75 NA intron (NM_013236, intron 10 of 11) L2c|LINE|L2 80053 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 302-3 chr2 31598335 31599019 + 0.75 NA Intergenic L1MA2|LINE|L1 -17739 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 162.5-14 chr10 92647379 92647624 + 0.75 NA intron (NM_004523, intron 18 of 21) L1MC5a|LINE|L1 -42454 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 273-11 chr3 150412058 150412714 + 0.75 NA intron (NM_001303264, intron 1 of 2) intron (NM_001303264, intron 1 of 2) 4088 NM_001303264 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 198-32 chr5 30747453 30748016 + 0.75 NA Intergenic Intergenic -445952 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 188.25-24 chr18 68817760 68818260 + 0.75 NA intron (NM_024781, intron 1 of 7) intron (NM_024781, intron 1 of 7) 19930 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 214-2 chr1 68807251 68807772 + 0.75 NA Intergenic Intergenic -248387 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 169.5-64 chr4 53086219 53086613 + 0.75 NA intron (NM_152540, intron 5 of 8) L1MA2|LINE|L1 224099 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 291.75-6 chr4 131118160 131118640 + 0.75 NA Intergenic Intergenic -646438 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 150.5-109 chr6 167415047 167415304 + 0.75 NA Intergenic Intergenic -30665 NR_163194 6953 Hs.351 NM_004610 ENSG00000203690 TCP10 TCP10A t-complex 10 pseudo 178-50 chr4 130108058 130108365 + 0.75 NA Intergenic Intergenic -268150 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 147-74 chr3 190079762 190080154 + 0.75 NA intron (NM_001134418, intron 1 of 14) MIR|SINE|MIR 40939 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 200-49 chr9 115693353 115693861 + 0.75 NA Intergenic Intergenic 50632 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 224.25-6 chr12 39617131 39617533 + 0.75 NA intron (NM_005164, intron 1 of 9) intron (NM_005164, intron 1 of 9) 2471 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 261.5-25 chr8 95487539 95488215 + 0.75 NA intron (NR_038207, intron 2 of 2) Arthur1B|DNA|hAT-Tip100 -218676 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 147-8 chr1 240925639 240926084 + 0.75 NA intron (NM_001282773, intron 4 of 15) L1PA16|LINE|L1 -206411 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 156.75-58 chr20 46974044 46974368 + 0.75 NA intron (NM_172110, intron 1 of 13) MIR|SINE|MIR 79363 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 223.25-13 chr2 140608824 140609122 + 0.75 NA intron (NM_018557, intron 41 of 90) intron (NM_018557, intron 41 of 90) -22288 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 190.25-49 chr7 15136254 15136695 + 0.75 NA Intergenic HAL1ME|LINE|L1 -161616 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 168.5-62 chr3 10409979 10410279 + 0.75 NA intron (NM_001001331, intron 3 of 22) MIR|SINE|MIR -15567 NR_030614 100126334 NR_030614 ENSG00000216135 MIR885 MIRN885|hsa-mir-885|mir-885 microRNA 885 ncRNA 206.5-45 chr7 54062389 54062892 + 0.75 NA Intergenic Intergenic -250709 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 195-6 chr10 25449073 25449413 + 0.75 NA intron (NM_020752, intron 4 of 10) intron (NM_020752, intron 4 of 10) -202469 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 204.75-52 chr6 166638970 166639521 + 0.75 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) -11994 NM_021135 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 198.25-40 chr5 15631828 15632306 + 0.75 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -17065 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 156.5-77 chr4 90538272 90538614 + 0.75 NA intron (NM_207491, intron 5 of 7) L1MC4|LINE|L1 303412 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 159.5-80 chr5 161840120 161840540 + 0.75 NA Intergenic Intergenic -6861 NM_000806 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 215.25-11 chr11 115634775 115635284 + 0.75 NA Intergenic Intergenic 99733 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 183.5-47 chr3 192595498 192596043 + 0.75 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 80748 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 150-64 chr3 112940219 112940630 + 0.75 NA intron (NM_138940, intron 1 of 2) L1MA5A|LINE|L1 34679 NM_138806 131450 Hs.309158 NM_138806 ENSG00000163606 CD200R1 CD200R|HCRTR2|MOX2R|OX2R CD200 receptor 1 protein-coding 358.5-4 chr5 118834671 118835561 + 0.75 NA TTS (NM_173666) TTS (NM_173666) -139470 NR_036052 100302285 NR_036052 ENSG00000284378 MIR1244-1 MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1 microRNA 1244-1 ncRNA 173.25-45 chr21 30329630 30329978 + 0.75 NA Intergenic Intergenic 7890 NM_001077711 643812 Hs.580881 NM_001077711 ENSG00000206107 KRTAP27-1 - keratin associated protein 27-1 protein-coding 274 chr1 204778361 204779000 + 0.75 NA Intergenic AluJb|SINE|Alu -49972 NM_001005389 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 159.5-53 chr3 39037890 39038262 + 0.75 NA intron (NM_001349253, intron 1 of 29) MamRTE1|LINE|RTE-BovB 13868 NM_001349253 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 318.75-4 chr6 58289512 58290150 + 0.75 NA Intergenic MER1A|DNA|hAT-Charlie -328385 NR_132994 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 276.5-9 chr22 45798432 45799044 + 0.75 NA intron (NM_013236, intron 9 of 11) L1ME1|LINE|L1 38214 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 153.5-59 chr20 31059196 31059527 + 0.75 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -198303 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 170.75-69 chr8 81611561 81612084 + 0.75 NA intron (NR_146081, intron 7 of 7) L1MC4|LINE|L1 19455 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 254.75-6 chr10 114699205 114699771 + 0.75 NA intron (NM_001322886, intron 1 of 20) HAL1ME|LINE|L1 -14485 NM_001322882 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 176.5-6 chr1 225634651 225635059 + 0.75 NA intron (NM_001008493, intron 1 of 14) L1M4|LINE|L1 18268 NM_001008493 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 ENAH actin regulator protein-coding 162.5-88 chr8 119231372 119231709 + 0.75 NA intron (NR_149114, intron 3 of 5) L1MA8|LINE|L1 15317 NR_149114 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 175.75-34 chr2 77433531 77433986 + 0.75 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 88618 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 201-9 chr11 99088571 99088848 + 0.75 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 67760 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 162-69 chr6 128619774 128620001 + 0.75 NA Intergenic Tigger9a|DNA|TcMar-Tigger -99288 NM_001291983 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 232.25-12 chr12 45110808 45111139 + 0.75 NA Intergenic MLT2A2|LTR|ERVL -45562 NR_026583 83956 Hs.650500 NM_032032 RACGAP1P FKSG42 Rac GTPase activating protein 1 pseudogene pseudo 155-22 chr12 28728298 28728544 + 0.75 NA Intergenic Intergenic -420857 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 146.5-114 chrX 151894861 151895222 + 0.75 NA Intergenic Intergenic 16042 NR_136578 105373368 Hs.256904 NR_136578 MAGEA4-AS1 - MAGEA4 antisense RNA 1 ncRNA 208.75-6 chr11 47712018 47712616 + 0.75 NA intron (NM_024783, intron 3 of 18).2 L1M5|LINE|L1 3052 NM_024783 79841 Hs.147377 NM_024783 ENSG00000165923 AGBL2 CCP2 ATP/GTP binding protein like 2 protein-coding 287-8 chr6 64412210 64412830 + 0.75 NA intron (NM_001292009, intron 28 of 43) intron (NM_001292009, intron 28 of 43) 605684 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 156.75-30 chr12 77069699 77069966 + 0.75 NA Intergenic Intergenic -4263 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 189.5-73 chr8 125189591 125189867 + 0.75 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) 97869 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 195-18 chr14 63008979 63009370 + 0.75 NA intron (NM_139318, intron 2 of 10) intron (NM_139318, intron 2 of 10) 36284 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 200.25-54 chr8 122979070 122979415 + 0.75 NA Intergenic Intergenic 46530 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 277.5-21 chr9 92495597 92496227 + 0.75 NA 3' UTR (NM_001393, exon 10 of 10) 3' UTR (NM_001393, exon 10 of 10) -13406 NM_001193335 54829 Hs.435655 NM_017680 ENSG00000106819 ASPN OS3|PLAP-1|PLAP1|SLRR1C asporin protein-coding 175.75-52 chr4 104506158 104506607 + 0.75 NA intron (NR_125926, intron 1 of 9) intron (NR_125926, intron 1 of 9) -11488 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 214.75-45 chr7 18076774 18077256 + 0.75 NA Intergenic L1MA8|LINE|L1 -9810 NM_001321872 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 315.75-3 chr4 97688915 97689468 + 0.75 NA intron (NM_174952, intron 10 of 10) intron (NM_174952, intron 10 of 10) 322265 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 185.25-50 chr20 603208 603700 + 0.75 NA TTS (NM_004609) TTS (NM_004609) 6812 NM_004609 6939 Hs.437 NM_004609 ENSG00000125878 TCF15 EC2|PARAXIS|bHLHa40 transcription factor 15 protein-coding 154.75-4 chr1 92854026 92854412 + 0.75 NA intron (NM_001252269, intron 1 of 3) MIR|SINE|MIR 13500 NR_002444 26782 Hs.180946 NR_002444 ENSG00000207523 SNORA66 RNU66|U66 small nucleolar RNA, H/ACA box 66 snoRNA 281.25-17 chr9 9843650 9844189 + 0.75 NA intron (NM_002839, intron 5 of 45) intron (NM_002839, intron 5 of 45) 44527 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 242-11 chr17 73318728 73319323 + 0.75 NA Intergenic Intergenic -7024 NM_012121 23580 Hs.3903 NM_012121 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein 4 protein-coding 163.5-110 chr7 56473324 56473684 + 0.75 NA Intergenic L1M4|LINE|L1 9815 NR_108095 100240728 Hs.292105 NR_108095 ENSG00000225488 LOC100240728 - uncharacterized LOC100240728 ncRNA 261-16 chr7 25169474 25170001 + 0.75 NA intron (NM_138811, intron 2 of 9) AluSq2|SINE|Alu 10617 NM_001371352 250-17 chr9 31065338 31065718 + 0.75 NA Intergenic Intergenic 315962 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 325.75-6 chr2 155210740 155211481 + 0.75 NA Intergenic Intergenic 512415 NM_002239 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 195.25-40 chr3 125013504 125014053 + 0.75 NA exon (NM_020733, exon 6 of 17) exon (NM_020733, exon 6 of 17) 42219 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF like domains 1 protein-coding 230.25-24 chr21 17880238 17880767 + 0.75 NA intron (NR_024354, intron 1 of 2) intron (NR_024354, intron 1 of 2) 5106 NR_024354 54075 Hs.404306 NR_024354 CHODL-AS1 C21orf39|NCRNA00157 CHODL antisense RNA 1 ncRNA 230.25-12 chr15 49247105 49247490 + 0.75 NA intron (NM_001289030, intron 6 of 10) L2a|LINE|L2 77050 NM_002044 2585 Hs.122006 NM_002044 ENSG00000156958 GALK2 GK2 galactokinase 2 protein-coding 154.75-95 chr8 9194886 9195141 + 0.75 NA intron (NR_125431, intron 2 of 3) intron (NR_125431, intron 2 of 3) 6014 NR_125431 101929128 NR_125431 ENSG00000248538 LOC101929128 - uncharacterized LOC101929128 ncRNA 220.5-5 chr11 72384906 72385376 + 0.75 NA intron (NM_001258393, intron 2 of 14) intron (NM_001258393, intron 2 of 14) 49390 NM_030813 81570 Hs.523877 NM_030813 ENSG00000162129 CLPB ANKCLB|HSP78|MEGCANN|MGCA7|SKD3 ClpB homolog, mitochondrial AAA ATPase chaperonin protein-coding 177.5-17 chr14 51939456 51939813 + 0.75 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) -21063 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 189.5-6 chr10 13598893 13599228 + 0.75 NA intron (NM_003675, intron 2 of 9) intron (NM_003675, intron 2 of 9) 12095 NM_003675 8559 Hs.660649 NM_003675 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 213.5-25 chr2 166652117 166652576 + 0.75 NA Intergenic Intergenic -165375 NM_002976 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 155.5-73 chr4 49633895 49634431 + 0.75 NA Intergenic (GAATG)n|Satellite|Satellite 647521 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 230.5-14 chr2 2222584 2223004 + 0.75 NA intron (NM_015025, intron 2 of 24) intron (NM_015025, intron 2 of 24) -96438 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 148.25-24 chr12 133194144 133194341 + 0.75 NA intron (NM_152943, intron 6 of 6) intron (NM_152943, intron 6 of 6) 12747 NM_001165882 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 231.5-25 chr5 22111514 22112058 + 0.75 NA intron (NM_004061, intron 4 of 14) intron (NM_004061, intron 4 of 14) -30566 NR_003921 5369 Hs.247975 NM_031887 ENSG00000168967 PMCHL1 - pro-melanin concentrating hormone like 1 (pseudogene) pseudo 256 chr1 238861115 238861471 + 0.75 NA Intergenic Intergenic -375276 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 189-7 chr10 35340872 35341147 + 0.75 NA intron (NM_001282852, intron 1 of 8) L2a|LINE|L2 4135 NM_001282853 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 209.5-17 chr14 83686124 83686582 + 0.75 NA Intergenic L1MB3|LINE|L1 1043721 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 177.75-40 chr21 29214540 29214815 + 0.75 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) 21183 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 233-26 chr5 118049870 118050252 + 0.75 NA intron (NR_104997, intron 2 of 2) L1ME1|LINE|L1 -232513 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 153.5-86 chr5 92472803 92473146 + 0.75 NA Intergenic MSTA1|LTR|ERVL-MaLR -1089657 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 164.25-23 chr12 32741973 32742244 + 0.75 NA intron (NM_001330380, intron 17 of 18) AluSz6|SINE|Alu 13789 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 173.75 chr1 31086523 31087020 + 0.75 NA Intergenic L2|LINE|L2 -21054 NM_001020658 9698 Hs.281707 NM_014676 ENSG00000134644 PUM1 HSPUM|PUMH|PUMH1|PUML1|SCA47 pumilio RNA binding family member 1 protein-coding 195.5-56 chr5 161444322 161444754 + 0.75 NA intron (NM_000813, intron 5 of 9) intron (NM_000813, intron 5 of 9) 103586 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 170-59 chr7 43158020 43158413 + 0.75 NA intron (NR_135295, intron 5 of 6) intron (NR_135295, intron 5 of 6) 7321 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 164.5-26 chr16 72253108 72253623 + 0.75 NA Intergenic Intergenic -80915 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 201-28 chr4 169835160 169835502 + 0.75 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -77387 NM_017867 54969 Hs.406756 NM_017867 ENSG00000056050 HPF1 C4orf27 histone PARylation factor 1 protein-coding 208.75-24 chr4 8091273 8091675 + 0.75 NA intron (NM_001130084, intron 3 of 19) L1ME3E|LINE|L1 -19486 NM_001286688 84448 Hs.233404 NM_032432 ENSG00000163995 ABLIM2 - actin binding LIM protein family member 2 protein-coding 190.75-58 chr5 164145524 164146060 + 0.75 NA Intergenic Intergenic 321610 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 153.25-91 chr5 32075548 32075780 + 0.75 NA intron (NM_178140, intron 18 of 24) intron (NM_178140, intron 18 of 24) 98655 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 154.25-84 chr8 66699554 66699932 + 0.75 NA intron (NM_001204173, intron 3 of 18) MLT1D|LTR|ERVL-MaLR -13038 NM_001033578 23678 Hs.613417 NM_013257 ENSG00000104205 SGK3 CISK|SGK2|SGKL serum/glucocorticoid regulated kinase family member 3 protein-coding 149-10 chr11 34380657 34380981 + 0.75 NA Intergenic L2c|LINE|L2 -22809 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 203.25-42 chr7 96728749 96729174 + 0.75 NA Intergenic AluSx1|SINE|Alu -19070 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 235-4 chr10 35054972 35055564 + 0.75 NA intron (NM_001324376, intron 4 of 21) intron (NM_001324376, intron 4 of 21) 19015 NM_001198778 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 262.5-4 chr12 39188605 39189088 + 0.75 NA Intergenic Intergenic 254274 NM_001173464 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 203-6 chr10 50328261 50328656 + 0.75 NA intron (NM_147156, intron 7 of 10) intron (NM_147156, intron 7 of 10) -79848 NM_019893 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 149.25-89 chr6 75934380 75934638 + 0.75 NA intron (NM_001563, intron 14 of 16) intron (NM_001563, intron 14 of 16) 138153 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 197.75-46 chr4 36835693 36836119 + 0.75 NA Intergenic Intergenic -165873 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 223.5-24 chr2 153263549 153263953 + 0.75 NA Intergenic L1PA10|LINE|L1 215011 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 196.25-43 chr3 181380889 181381220 + 0.75 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 61432 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 237-15 chr7 8913010 8913676 + 0.75 NA Intergenic Intergenic 479734 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 219.75-23 chr2 229194425 229194869 + 0.75 NA intron (NM_001100818, intron 1 of 2) intron (NM_001100818, intron 1 of 2) 37445 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 153-94 chr9 2137319 2137577 + 0.75 NA intron (NM_001289397, intron 27 of 32) intron (NM_001289397, intron 27 of 32) -20214 NM_001289398 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 152.5-67 chr3 8473539 8473848 + 0.75 NA intron (NR_033378, intron 3 of 3) AluJb|SINE|Alu 27965 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 191.75-15 chr11 84425544 84426035 + 0.75 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -108450 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 216-12 chr11 85751051 85751646 + 0.75 NA intron (NM_001365827, intron 1 of 17) intron (NM_001365827, intron 1 of 17) 6721 NM_001162951 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 197.75-49 chr5 9383917 9384313 + 0.75 NA intron (NM_003966, intron 2 of 22) intron (NM_003966, intron 2 of 22) -127218 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 162.75-72 chr6 107500750 107501134 + 0.75 NA intron (NM_018013, intron 1 of 6) intron (NM_018013, intron 1 of 6) 10825 NM_018013 55084 Hs.445244 NM_018013 ENSG00000112320 SOBP JXC1|MRAMS sine oculis binding protein homolog protein-coding 186.75-31 chr15 37418763 37419165 + 0.75 NA Intergenic Intergenic -317653 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 182.75-11 chr10 124273299 124273716 + 0.75 NA Intergenic HAL1|LINE|L1 145416 NM_001322974 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 238-22 chr8 121824517 121825051 + 0.75 NA Intergenic Intergenic -183344 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 212.25-48 chr8 89337423 89337812 + 0.75 NA Intergenic L1MA2|LINE|L1 420094 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 174.5-2 chr1 57441875 57442250 + 0.75 NA intron (NM_001353980, intron 4 of 5) L1PA16|LINE|L1 -17141 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 152.75-9 chr1 177896989 177897252 + 0.75 NA Intergenic Intergenic 72802 NM_033127 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|RGPR-p117|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 162.75-26 chr14 47140350 47140718 + 0.75 NA intron (NM_001113498, intron 4 of 16) L1MA4A|LINE|L1 202712 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 211-37 chr8 141692165 141692553 + 0.75 NA Intergenic MIRb|SINE|MIR 93954 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 240-11 chr18 3016696 3017330 + 0.75 NA Intergenic Intergenic -5066 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 182.25-13 chr14 58651777 58652215 + 0.75 NA Intergenic L1MEd|LINE|L1 13159 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 260.25-15 chr3 21342488 21343124 + 0.75 NA Intergenic Intergenic -62920 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 240.5-27 chr6 146256078 146256550 + 0.75 NA intron (NM_001278065, intron 3 of 9) intron (NM_001278065, intron 3 of 9) 227116 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 168-56 chr5 7053010 7053417 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR 216141 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 265-4 chr14 67012971 67013679 + 0.75 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -176115 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 244.25-22 chr7 108932746 108933270 + 0.75 NA Intergenic Intergenic -48421 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 208.5-13 chr12 16672742 16673296 + 0.75 NA Intergenic Intergenic -64805 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 169.25-50 chr6 114808234 114808459 + 0.75 NA Intergenic Intergenic -745469 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 161.75-42 chr22 42972400 42972665 + 0.75 NA intron (NM_001184970, intron 1 of 10) intron (NM_001184970, intron 1 of 10) -12196 NM_001349970 11252 Hs.162877 NM_007229 ENSG00000100266 PACSIN2 SDPII protein kinase C and casein kinase substrate in neurons 2 protein-coding 154.25-39 chr17 61347313 61347737 + 0.75 NA intron (NM_001330413, intron 23 of 25) L2c|LINE|L2 20179 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 192.5-58 chr7 96496008 96496426 + 0.75 NA intron (NR_163951, intron 3 of 4) intron (NR_163951, intron 3 of 4) 7306 NR_163949 177.25-31 chr18 69460131 69460389 + 0.75 NA intron (NM_152721, intron 1 of 7) L1MC4|LINE|L1 -9671 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 153.5-73 chr4 123113029 123113323 + 0.75 NA intron (NM_001345856, intron 14 of 15) intron (NM_001345856, intron 14 of 15) 190098 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 177-70 chr9 11569299 11569773 + 0.75 NA Intergenic Intergenic 956330 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 153.5-78 chr5 24384107 24384464 + 0.75 NA Intergenic Intergenic 260693 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 205.25-13 chr15 61962136 61962644 + 0.75 NA exon (NM_017684, exon 32 of 83) exon (NM_017684, exon 32 of 83) 98057 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 303.25-6 chr2 146924697 146925371 + 0.75 NA Intergenic L1MEc|LINE|L1 337977 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 176-44 chr3 102209566 102210011 + 0.75 NA Intergenic MIR|SINE|MIR 46083 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 157-107 chrX 50150024 50150506 + 0.75 NA Intergenic MLT2A1|LTR|ERVL 50107 NM_139289 8852 Hs.97633 NM_003886 ENSG00000147081 AKAP4 AKAP 82|AKAP-4|AKAP82|CT99|FSC1|HI|PRKA4|hAKAP82|p82 A-kinase anchoring protein 4 protein-coding 169.5-67 chr4 62260656 62260901 + 0.75 NA Intergenic Intergenic -99013 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 161.25-10 chr11 26139533 26139802 + 0.75 NA Intergenic Intergenic -49456 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 161-92 chr9 100130223 100130543 + 0.75 NA intron (NR_134606, intron 3 of 16) intron (NR_134606, intron 3 of 16) 31140 NM_014425 27130 Hs.558477 NM_014425 ENSG00000119509 INVS INV|NPH2|NPHP2 inversin protein-coding 183-23 chr2 6382369 6382682 + 0.75 NA Intergenic AluSg|SINE|Alu -7103 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 193.75-19 chr12 89492177 89492482 + 0.75 NA intron (NR_037660, intron 1 of 9) A-rich|Low_complexity|Low_complexity 32467 NM_003774 8693 Hs.25130 NM_003774 ENSG00000257594 GALNT4 GALNAC-T4|GALNACT4 polypeptide N-acetylgalactosaminyltransferase 4 protein-coding 149.75-99 chr8 90070166 90070426 + 0.75 NA intron (NM_001366795, intron 2 of 9) intron (NM_001366795, intron 2 of 9) 12583 NM_001366795 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 153.5-112 chr8 111443697 111444118 + 0.75 NA intron (NR_146282, intron 2 of 3) intron (NR_146282, intron 2 of 3) 67268 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 207.75-29 chr3 167314222 167314658 + 0.75 NA intron (NM_001199202, intron 15 of 20) intron (NM_001199202, intron 15 of 20) 65843 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 213.75-31 chr5 144432402 144432936 + 0.75 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 227278 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 223-6 chr11 108649666 108650078 + 0.75 NA Intergenic L1M1|LINE|L1 -15197 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 178-20 chr14 52598417 52598700 + 0.75 NA intron (NM_001353361, intron 2 of 7) intron (NM_001353361, intron 2 of 7) 45722 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 199.25-45 chr3 181942838 181943264 + 0.75 NA Intergenic Intergenic -9313 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 204.25-20 chr18 73075697 73076021 + 0.75 NA Intergenic Intergenic 188639 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 190.75-38 chr20 51208648 51209019 + 0.75 NA Intergenic Intergenic -185726 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 209.25-36 chr4 65176165 65176612 + 0.75 NA Intergenic AluSz|SINE|Alu -171888 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 177.25-8 chr10 88552432 88552787 + 0.75 NA intron (NM_018363, intron 4 of 6) MamRTE1|LINE|RTE-BovB 30709 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 187-33 chr3 83196833 83197204 + 0.75 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 1210876 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 153.75-37 chr2 168353469 168353680 + 0.75 NA Intergenic L1ME1|LINE|L1 -102698 NM_203463 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 205-15 chr14 60557680 60558050 + 0.75 NA Intergenic Intergenic 48719 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 189.25-22 chr17 81629888 81630221 + 0.75 NA intron (NM_001369698, intron 1 of 16) intron (NM_001369698, intron 1 of 16) 7058 NM_017921 55666 Hs.464333 NM_017921 ENSG00000182446 NPLOC4 NPL4 NPL4 homolog, ubiquitin recognition factor protein-coding 168-70 chr9 120413371 120413725 + 0.75 NA intron (NR_073558, intron 28 of 37) intron (NR_073558, intron 28 of 37) 166619 NR_073555 55755 Hs.269560 NM_018249 ENSG00000136861 CDK5RAP2 C48|Cep215|MCPH3 CDK5 regulatory subunit associated protein 2 protein-coding 210.75-8 chr10 72883821 72884193 + 0.75 NA intron (NM_138357, intron 6 of 7) L1ME3B|LINE|L1 -9732 NR_130125 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 158.5-103 chr9 84613038 84613289 + 0.75 NA Intergenic MIR|SINE|MIR -55295 NM_001291937 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 241.25-15 chr2 195977883 195978548 + 0.75 NA intron (NM_018897, intron 15 of 64) L1MA3|LINE|L1 90622 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 168.75-30 chr17 73630014 73630434 + 0.75 NA intron (NM_001144952, intron 1 of 44) MER5A|DNA|hAT-Charlie 14221 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 167.75-59 chr3 179118332 179118596 + 0.75 NA intron (NR_125401, intron 2 of 2) L1M1|LINE|L1 29509 NR_125401 101928739 Hs.434553 NR_125401 ENSG00000229102 LOC101928739 - uncharacterized LOC101928739 ncRNA 320-3 chr14 46855853 46856907 + 0.75 NA intron (NM_001113498, intron 14 of 16) L1ME1|LINE|L1 -204599 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 276.75-15 chr7 83131770 83132354 + 0.75 NA intron (NM_033026, intron 3 of 24) intron (NM_033026, intron 3 of 24) 30822 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 274.75-18 chr8 128324595 128325101 + 0.75 NA Intergenic Intergenic 174732 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 230.5-29 chr6 140932969 140933456 + 0.75 NA Intergenic L1MC2|LINE|L1 249398 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 180.75-17 chr14 62036374 62036731 + 0.75 NA intron (NM_001367661, intron 4 of 8) THE1B|LTR|ERVL-MaLR -80805 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 173-73 chr7 3729025 3729371 + 0.75 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) -400487 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 262.25-12 chr5 17215132 17215870 + 0.75 NA intron (NR_027253, intron 1 of 2) MER20|DNA|hAT-Charlie -1322 NM_001271606 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 146-91 chr8 76336948 76337355 + 0.75 NA Intergenic MIRb|SINE|MIR -69503 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 282.25-6 chr22 31901894 31902405 + 0.75 NA intron (NR_146296, intron 41 of 42) intron (NR_146296, intron 41 of 42) 36305 NM_001302820 25775 Hs.627602 NM_015372 ENSG00000128254 C22orf24 HSN44A4A chromosome 22 open reading frame 24 protein-coding 183.75-5 chr1 115082758 115083087 + 0.75 NA intron (NM_005725, intron 1 of 7) MIRc|SINE|MIR 6578 NM_001308315 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 161.75-38 chr20 46858410 46858775 + 0.75 NA Intergenic L1ME2|LINE|L1 -36032 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 230-19 chr21 22612338 22612788 + 0.75 NA Intergenic Intergenic -466721 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 231.25-38 chr8 113492418 113492933 + 0.75 NA Intergenic L1MB8|LINE|L1 -55736 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 228.75-21 chr5 156781017 156781511 + 0.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -69031 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 202-34 chr3 95389057 95389385 + 0.75 NA Intergenic Intergenic 293972 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 150.5-91 chr5 8291939 8292384 + 0.75 NA Intergenic Intergenic 165403 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 287.75-5 chr14 48678076 48678515 + 0.75 NA Intergenic L2|LINE|L2 -883281 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 190.5-2 chr1 59071073 59071512 + 0.75 NA intron (NR_110626, intron 2 of 2) L2c|LINE|L2 50816 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 222.75-38 chr9 29172243 29172856 + 0.75 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 39750 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 145.75-127 chr8 109801436 109801811 + 0.75 NA Intergenic Intergenic -109832 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 160.5-39 chr15 99734885 99735178 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR -1587 NM_001284420 145748 Hs.562568 NM_152449 ENSG00000183060 LYSMD4 - LysM domain containing 4 protein-coding 266.25-2 chr14 45734517 45734988 + 0.75 NA Intergenic Intergenic -19150 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 351.75-7 chr21 25219739 25220422 + 0.75 NA Intergenic Intergenic 211621 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 202.5-22 chr17 59632523 59632866 + 0.75 NA intron (NM_001288653, intron 1 of 31) intron (NM_001288653, intron 1 of 31) 12799 NM_004859 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 208.75-15 chr18 4643700 4644064 + 0.75 NA Intergenic L2a|LINE|L2 -188575 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 162.75-81 chr8 56259211 56259565 + 0.75 NA Intergenic L1MB8|LINE|L1 47599 NM_001011671 79145 Hs.436913 NM_024300 ENSG00000170791 CHCHD7 COX23 coiled-coil-helix-coiled-coil-helix domain containing 7 protein-coding 161.25-48 chr3 147447208 147447458 + 0.75 NA intron (NR_121655, intron 1 of 2) intron (NR_121655, intron 1 of 2) 26006 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 199.25-64 chr7 48542332 48542679 + 0.75 NA intron (NM_152701, intron 55 of 61) intron (NM_152701, intron 55 of 61) 371047 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 154.25-62 chr4 157470984 157471299 + 0.75 NA Intergenic MER41-int|LTR|ERV1 -101349 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 156.75-104 chr9 124333219 124333518 + 0.75 NA intron (NM_001166169, intron 7 of 9) intron (NM_001166169, intron 7 of 9) -20105 NR_027406 100129034 Hs.654980 NR_027406 LOC100129034 - uncharacterized LOC100129034 ncRNA 165.5-71 chr5 59787420 59787788 + 0.75 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -18756 NM_001197218 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 213.75-5 chr11 91854410 91854968 + 0.75 NA Intergenic MIR|SINE|MIR -370345 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 205.5-15 chr15 59955244 59955612 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 -48883 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 250.75-11 chr16 48374930 48375637 + 0.75 NA intron (NM_003031, intron 1 of 1) L1MC5a|LINE|L1 -9396 NM_001006610 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 196.5-8 chr11 113117827 113118293 + 0.75 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -154600 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 269.75-5 chr15 33806471 33806995 + 0.75 NA intron (NM_001243996, intron 69 of 102) intron (NM_001243996, intron 69 of 102) -161764 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 196.5-52 chr7 55089065 55089473 + 0.75 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) -20570 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 196.5-9 chr11 125052763 125053274 + 0.75 NA Intergenic Intergenic -10287 NM_198277 219855 Hs.352661 NM_198277 ENSG00000134955 SLC37A2 pp11662 solute carrier family 37 member 2 protein-coding 160.25-15 chr11 114578570 114578935 + 0.75 NA intron (NM_017678, intron 5 of 5) intron (NM_017678, intron 5 of 5) 17034 NM_017678 54827 Hs.179100 NM_017678 ENSG00000137634 NXPE4 C11orf33|FAM55D neurexophilin and PC-esterase domain family member 4 protein-coding 164-12 chr11 73786998 73787492 + 0.75 NA promoter-TSS (NR_134661) promoter-TSS (NR_134661) -629 NR_134659 51642 Hs.503239 NM_016055 ENSG00000175581 MRPL48 CGI-118|HSPC290|L48MT|MRP-L48 mitochondrial ribosomal protein L48 protein-coding 216-7 chr1 196576589 196576959 + 0.75 NA intron (NM_001287820, intron 1 of 26) intron (NM_001287820, intron 1 of 26) 5707 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 163.75-67 chr7 1565032 1565352 + 0.75 NA Intergenic Intergenic 4840 NM_001134340 84262 Hs.446311 NM_032302 ENSG00000157778 PSMG3 C7orf48|PAC3 proteasome assembly chaperone 3 protein-coding 157.5-47 chr2 54373729 54374050 + 0.75 NA Intergenic L3|LINE|CR1 43005 NM_001100396 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 154.5-67 chr4 11341232 11341592 + 0.75 NA Intergenic L2a|LINE|L2 -27415 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 168-24 chr16 11133585 11133957 + 0.75 NA intron (NM_015226, intron 21 of 22) intron (NM_015226, intron 21 of 22) 122411 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3 suppressor of cytokine signaling 1 protein-coding 189.75-45 chr22 28654609 28654958 + 0.75 NA intron (NM_001145418, intron 1 of 22) L3|LINE|CR1 25082 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 201-24 chr4 61157490 61158019 + 0.75 NA Intergenic Intergenic 14098 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 190.5-22 chr18 12840561 12841011 + 0.75 NA exon (NM_001308287, exon 1 of 8) exon (NM_001308287, exon 1 of 8) 176 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 211.25-37 chr5 54947812 54948240 + 0.75 NA Intergenic L1PREC2|LINE|L1 37567 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 176.75-91 chr8 138905699 138905961 + 0.75 NA intron (NM_152888, intron 1 of 64) L2c|LINE|L2 8211 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 251.25-6 chr10 120255759 120256119 + 0.75 NA Intergenic L1MEd|LINE|L1 99284 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 260.5-16 chr8 119218397 119219016 + 0.75 NA intron (NR_149111, intron 1 of 1) intron (NR_149111, intron 1 of 1) 10343 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 197.25-36 chr4 90618723 90619107 + 0.75 NA intron (NM_207491, intron 5 of 7) intron (NM_207491, intron 5 of 7) 383884 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 217.75-30 chr4 47128598 47129052 + 0.75 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 97258 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 201-19 chr17 55360646 55361145 + 0.75 NA Intergenic HSMAR2|DNA|TcMar-Mariner 60940 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 155.5-51 chr2 162677409 162677719 + 0.75 NA intron (NM_033272, intron 2 of 15) L1ME3A|LINE|L1 -91372 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 207.5-2 chr1 152206490 152206963 + 0.75 NA Intergenic MIRb|SINE|MIR 17470 NM_001009931 388697 Hs.490162 NM_001009931 ENSG00000197915 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 169.25-16 chr15 91323978 91324297 + 0.75 NA Intergenic L1MA3|LINE|L1 -139202 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 182.25-70 chrY 11297556 11298032 + 0.75 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat 1123796 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 231.75-7 chr13 112923579 112924158 + 0.75 NA Intergenic L1MC4|LINE|L1 44770 NR_034002 100289410 Hs.667436 NR_034002 MCF2L-AS1 - MCF2L antisense RNA 1 ncRNA 229-11 chr2 194608138 194608636 + 0.75 NA Intergenic HUERS-P3b-int|LTR|ERV1 -122208 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 212.25-30 chr4 153600728 153601177 + 0.75 NA intron (NM_001131007, intron 21 of 34) AluSz|SINE|Alu -39216 NR_134873 100419170 Hs.382102 NR_134873 ENSG00000250771 LOC100419170 - toll like receptor 2 pseudogene pseudo 149.75-85 chr6 111362864 111363216 + 0.75 NA intron (NM_001286431, intron 19 of 34) MamSINE1|SINE|tRNA-RTE 103701 NM_153369 91749 Hs.400572 NM_153369 ENSG00000173214 MFSD4B KIAA1919|NaGLT1 major facilitator superfamily domain containing 4B protein-coding 154-36 chr16 13019509 13019822 + 0.75 NA intron (NM_001145204, intron 2 of 4) L1PA13|LINE|L1 118067 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 189.5 chr1 167763441 167763743 + 0.75 NA intron (NM_024569, intron 1 of 4) intron (NM_024569, intron 1 of 4) 41610 NM_024569 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 148.5-48 chr2 183080651 183080947 + 0.75 NA intron (NR_135688, intron 1 of 2) intron (NR_135688, intron 1 of 2) 2052 NR_135688 142679 Hs.132237 NM_080876 ENSG00000162999 DUSP19 DUSP17|LMWDSP3|SKRP1|TS-DSP1 dual specificity phosphatase 19 protein-coding 210.75-14 chr13 58329453 58329845 + 0.75 NA Intergenic Intergenic -96532 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 260.5-11 chr4 45599813 45600265 + 0.75 NA Intergenic L1MB5|LINE|L1 524015 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 207.25-11 chr11 40721270 40721692 + 0.75 NA intron (NM_020929, intron 1 of 4) MLT1A0|LTR|ERVL-MaLR -428351 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 250.75-2 chr1 153236461 153237012 + 0.75 NA Intergenic L1M5|LINE|L1 19152 NM_001195571 574414 Hs.135098 NM_001195571 ENSG00000203783 PRR9 - proline rich 9 protein-coding 225.75-25 chr5 114693580 114694037 + 0.75 NA intron (NR_130785, intron 1 of 12) intron (NR_130785, intron 1 of 12) 79605 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 195-48 chr8 132530166 132530565 + 0.75 NA Intergenic AluSx|SINE|Alu 31114 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 148.25-90 chr8 26723269 26723516 + 0.75 NA Intergenic Intergenic 142263 NM_033303 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 241.75-5 chr13 39252031 39252668 + 0.75 NA Intergenic L1M5|LINE|L1 213893 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 154.25-3 chr1 112113607 112113932 + 0.75 NA Intergenic MIRb|SINE|MIR 123233 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 267.75-8 chr20 31193759 31194352 + 0.75 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -63609 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 255.5-35 chr7 3563283 3563903 + 0.75 NA intron (NM_152744, intron 1 of 44) L1M5|LINE|L1 262341 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 271 chr1 164083057 164083510 + 0.75 NA Intergenic MER53|DNA|hAT -476077 NM_002585 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 170.25-20 chr14 99975230 99975479 + 0.75 NA intron (NM_001330221, intron 1 of 13) L1ME3B|LINE|L1 3932 NM_001330221 51466 Hs.125867 NM_016337 ENSG00000196405 EVL RNB6 Enah/Vasp-like protein-coding 178.5 chr1 102255531 102255885 + 0.75 NA Intergenic L1MC1|LINE|L1 -258474 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 200.5-63 chr9 74780493 74781103 + 0.75 NA intron (NM_017662, intron 23 of 38) L2a|LINE|L2 106549 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 156.75-62 chr3 41398711 41398963 + 0.75 NA intron (NR_136342, intron 32 of 34) L1MA6|LINE|L1 199332 NM_001098209 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 257.25-27 chr8 133512515 133512894 + 0.75 NA intron (NM_003033, intron 2 of 8) intron (NM_003033, intron 2 of 8) 59183 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 180.5-69 chr8 70815977 70816363 + 0.75 NA Intergenic L1M2|LINE|L1 146831 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 289.25-22 chr8 132794230 132794916 + 0.75 NA exon (NM_016018, exon 3 of 21) exon (NM_016018, exon 3 of 21) 19185 NM_001277196 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 170.5-10 chr11 108161339 108161608 + 0.75 NA exon (NM_002519, exon 17 of 18) exon (NM_002519, exon 17 of 18) 39906 NM_000019 38 Hs.232375 NM_000019 ENSG00000075239 ACAT1 ACAT|MAT|T2|THIL acetyl-CoA acetyltransferase 1 protein-coding 202-16 chr17 13917772 13918149 + 0.75 NA Intergenic Intergenic -106538 NR_003261 94158 Hs.633073 NR_003261 CDRT15P1 CDRT15P CMT1A duplicated region transcript 15 pseudogene 1 pseudo 244.25-11 chr18 27700064 27700701 + 0.75 NA Intergenic MER21C|LTR|ERVL 336259 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 294.25-6 chr2 23728211 23728789 + 0.75 NA Intergenic L1MC4a|LINE|L1 198623 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 168.75-33 chr18 2143332 2143662 + 0.75 NA Intergenic Intergenic 428008 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 317.5-2 chr2 121784301 121784847 + 0.75 NA Intergenic AluJo|SINE|Alu 28923 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 302.75-6 chr7 49145629 49146297 + 0.75 NA Intergenic L1PB2|LINE|L1 221416 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 146.5-50 chr2 77066339 77066586 + 0.75 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 80497 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 231.75-18 chr3 150021355 150021979 + 0.75 NA Intergenic L1P4|LINE|L1 -38301 NM_001079809 653659 Hs.652908 NM_001079809 TMEM183B C1ORF37DUP|C1orf37-DUP transmembrane protein 183B protein-coding 224.25-4 chr10 90794469 90794842 + 0.75 NA intron (NM_019860, intron 1 of 2) AluJo|SINE|Alu 63384 NM_019859 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 227-10 chr2 161136799 161137453 + 0.75 NA intron (NM_004180, intron 1 of 7) intron (NM_004180, intron 1 of 7) 163 NM_004180 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 149.75-3 chr1 80106412 80106655 + 0.75 NA Intergenic Intergenic -429222 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 166.75-85 chr7 124752954 124753333 + 0.75 NA intron (NM_005302, intron 1 of 1) intron (NM_005302, intron 1 of 1) 12649 NM_005302 2861 Hs.406094 NM_005302 ENSG00000170775 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 protein-coding 348 chr3 145052625 145053339 + 0.75 NA Intergenic ERVL-B4-int|LTR|ERVL 1016203 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 167-28 chr15 57213817 57214097 + 0.75 NA intron (NM_207038, intron 8 of 19) intron (NM_207038, intron 8 of 19) -5473 NM_001306220 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 231.25-23 chr21 46131366 46131776 + 0.75 NA intron (NM_001849, intron 27 of 27) intron (NM_001849, intron 27 of 27) -19804 NM_001350598 100861507 Hs.570448 NM_001350598 FTCD-AS1 - FTCD antisense RNA 1 protein-coding 150.75-93 chr7 49393192 49393435 + 0.75 NA Intergenic LTR82B|LTR|ERVL -380325 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 234.5-19 chr4 30469027 30469679 + 0.75 NA Intergenic L1MA6|LINE|L1 -251016 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 212.25-34 chr5 79044016 79044393 + 0.75 NA intron (NM_013391, intron 6 of 15) intron (NM_013391, intron 6 of 15) 25470 NM_013391 29958 Hs.655653 NM_013391 ENSG00000132837 DMGDH DMGDHD|ME2GLYDH dimethylglycine dehydrogenase protein-coding 201.75-28 chr3 178993033 178993495 + 0.75 NA Intergenic LTR16E2|LTR|ERVL 78545 NM_152240 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 185.25-29 chr16 71646602 71646954 + 0.75 NA 3' UTR (NM_001289003, exon 18 of 18) 3' UTR (NM_001289003, exon 18 of 18) 20594 NM_001271329 91862 Hs.513706 NM_052858 ENSG00000140832 MARVELD3 MARVD3|MRVLDC3 MARVEL domain containing 3 protein-coding 162.75-92 chr9 123163616 123163939 + 0.75 NA intron (NM_001171137, intron 6 of 18) intron (NM_001171137, intron 6 of 18) -48300 NR_026677 81571 Hs.708072 NM_030814 ENSG00000236901 MIR600HG C9orf45|GL012|NCRNA00287 MIR600 host gene ncRNA 189.75-75 chr8 40823436 40823846 + 0.75 NA intron (NM_024645, intron 2 of 6) AluSc8|SINE|Alu 74185 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 211-7 chr1 244445163 244445599 + 0.75 NA intron (NM_001365073, intron 1 of 12) intron (NM_001365073, intron 1 of 12) 6528 NM_001126 159 Hs.498313 NM_001126 ENSG00000035687 ADSS ADEH|ADSS 2|ADSS2 adenylosuccinate synthase protein-coding 215.25-36 chr5 106102363 106102931 + 0.75 NA Intergenic L1MC4|LINE|L1 908367 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 276.25-4 chr14 72445734 72446356 + 0.75 NA intron (NM_001370288, intron 3 of 16) MLT1C|LTR|ERVL-MaLR -70775 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 232-3 chr1 93965913 93966384 + 0.75 NA Intergenic Intergenic -56550 NM_001308253 2730 Hs.315562 NM_002061 ENSG00000023909 GCLM GLCLR glutamate-cysteine ligase modifier subunit protein-coding 166.5-89 chr8 83846743 83847151 + 0.75 NA Intergenic Intergenic -335840 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 189.75-42 chr20 16732610 16733246 + 0.75 NA intron (NM_198220, intron 3 of 6) L2|LINE|L2 2902 NM_198220 6629 Hs.280378 NM_003092 ENSG00000125870 SNRPB2 Msl1|U2B'' small nuclear ribonucleoprotein polypeptide B2 protein-coding 211.25-15 chr15 39778689 39779010 + 0.75 NA intron (NM_001324338, intron 1 of 11) intron (NM_001324338, intron 1 of 11) 3992 NM_152597 161835 Hs.129598 NM_152597 ENSG00000150667 FSIP1 HSD10 fibrous sheath interacting protein 1 protein-coding 177.5-25 chr16 89767980 89768257 + 0.75 NA intron (NM_000135, intron 26 of 42) AluJb|SINE|Alu 46581 NR_110129 92822 Hs.290154 NM_152287 ENSG00000158805 ZNF276 CENP-Z|CENPZ|ZADT|ZFP276|ZNF477 zinc finger protein 276 protein-coding 245.5-17 chr2 116705738 116706235 + 0.75 NA Intergenic Intergenic -1108705 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 202.75-16 chr12 100283182 100283506 + 0.75 NA intron (NM_017988, intron 2 of 17) intron (NM_017988, intron 2 of 17) 15960 NM_001330253 55681 Hs.506481 NM_017988 ENSG00000136021 SCYL2 CVAK104 SCY1 like pseudokinase 2 protein-coding 227-6 chr18 4203118 4203471 + 0.75 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -61308 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 244.5-21 chr3 183701820 183702484 + 0.75 NA intron (NM_001351371, intron 1 of 21) intron (NM_001351371, intron 1 of 21) 4334 NM_001351370 55689 Hs.632575 NM_018023 ENSG00000163872 YEATS2 - YEATS domain containing 2 protein-coding 219-13 chr21 30864794 30865273 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR 16547 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 147.5-19 chr12 78988890 78989164 + 0.75 NA intron (NM_001291901, intron 2 of 9) L2a|LINE|L2 -56665 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 179.5-54 chr4 31535083 31535368 + 0.75 NA intron (NR_149121, intron 1 of 2) L1M2|LINE|L1 28681 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 149-6 chr10 20546383 20546678 + 0.75 NA Intergenic AluJo|SINE|Alu -5440 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 223.5-44 chr8 83638950 83639448 + 0.75 NA Intergenic Intergenic 235441 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 210-55 chr8 19559097 19559796 + 0.5 NA intron (NM_001354497, intron 1 of 7) L1ME3B|LINE|L1 43099 NR_148901 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 153-77 chr6 22728788 22729252 + 0.5 NA Intergenic Intergenic -11096 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 149.5-44 chr2 82322207 82322549 + 0.5 NA Intergenic L2|LINE|L2 -534425 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 261.25-13 chr7 28908564 28909189 + 0.5 NA Intergenic Intergenic 49454 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 205.75-36 chr2 210572959 210573565 + 0.5 NA intron (NR_161225, intron 2 of 38) (TTATGTA)n|Simple_repeat|Simple_repeat 16663 NM_001875 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 163.25-84 chr8 116341707 116342351 + 0.5 NA Intergenic Intergenic -16970 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 193.25-37 chr3 80057937 80058497 + 0.5 NA Intergenic L1MA9|LINE|L1 -290219 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 205.25-36 chr6 150712648 150713320 + 0.5 NA intron (NM_001329800, intron 1 of 15) intron (NM_001329800, intron 1 of 15) -8115 NM_001329803 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 146-25 chr15 62975234 62975585 + 0.5 NA Intergenic Intergenic -67338 NM_001301244 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 153.25-73 chr21 33698499 33698901 + 0.5 NA intron (NM_001001132, intron 1 of 29) intron (NM_001001132, intron 1 of 29) 56199 NM_001331008 6453 Hs.90221 NM_003024 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 protein-coding 156.25-35 chr2 14288288 14288847 + 0.5 NA intron (NR_103814, intron 2 of 3) intron (NR_103814, intron 2 of 3) 112391 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 166.75-71 chr5 63171755 63172363 + 0.5 NA Intergenic L1ME3G|LINE|L1 593240 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 145.75-95 chr5 83517817 83518260 + 0.5 NA intron (NM_001126336, intron 6 of 12) intron (NM_001126336, intron 6 of 12) 44276 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 146.75-48 chr2 36462789 36463240 + 0.5 NA intron (NM_016441, intron 4 of 16) intron (NM_016441, intron 4 of 16) 107236 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 149.5-42 chr2 66820591 66821075 + 0.5 NA Intergenic Intergenic -83603 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 160.25-71 chr7 27682863 27683273 + 0.5 NA Intergenic L1MA9|LINE|L1 -20185 NM_152740 11112 Hs.406758 NM_152740 ENSG00000106049 HIBADH NS5ATP1 3-hydroxyisobutyrate dehydrogenase protein-coding 153.25-16 chr1 242123586 242124091 + 0.5 NA intron (NM_001320272, intron 7 of 10) intron (NM_001320272, intron 7 of 10) -124740 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 160-13 chr11 96268909 96269457 + 0.5 NA intron (NM_032427, intron 1 of 4) L3|LINE|CR1 -72255 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 232.5-13 chr13 92514440 92515174 + 0.5 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 24644 NR_049840 100847092 NR_049840 ENSG00000263741 MIR548AS - microRNA 548as ncRNA 149.5-12 chr10 35389823 35390204 + 0.5 NA intron (NM_001282852, intron 1 of 8) intron (NM_001282852, intron 1 of 8) 53139 NM_001282853 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 160.25-42 chr22 27372340 27372962 + 0.5 NA Intergenic Intergenic 62000 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 149.25-73 chr4 56755524 56756040 + 0.5 NA Intergenic Intergenic 65691 NR_073417 6691 Hs.98243 NM_021114 ENSG00000128040 SPINK2 HUSI-II|SPGF29 serine peptidase inhibitor, Kazal type 2 protein-coding 152.75-60 chr3 147310696 147311210 + 0.5 NA Intergenic Intergenic 81477 NR_040762 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 148.5-78 chr5 33539368 33539703 + 0.5 NA intron (NM_001324512, intron 20 of 21) intron (NM_001324512, intron 20 of 21) 98759 NM_001258438 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 190.25-31 chr4 72336319 72336834 + 0.5 NA intron (NM_014243, intron 5 of 21) intron (NM_014243, intron 5 of 21) 232645 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 200.75-8 chr10 101249181 101249875 + 0.5 NA Intergenic Intergenic 14022 NR_120621 101927419 Hs.638503 NR_120621 ENSG00000229649 LINC02681 - long intergenic non-protein coding RNA 2681 ncRNA 152.5-40 chr17 62156632 62157215 + 0.5 NA Intergenic L3|LINE|CR1 -91645 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 149.5-24 chr14 55853205 55853620 + 0.5 NA Intergenic L2a|LINE|L2 -56738 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 183.25-43 chr3 132466427 132466869 + 0.5 NA intron (NM_001329126, intron 19 of 56) intron (NM_001329126, intron 19 of 56) 49146 NM_001329126 23317 Hs.12707 NM_015268 ENSG00000138246 DNAJC13 PARK21|RME8 DnaJ heat shock protein family (Hsp40) member C13 protein-coding 234.75-2 chr1 111988185 111988818 + 0.5 NA intron (NM_172198, intron 1 of 6) intron (NM_172198, intron 1 of 6) 654 NM_004980 3752 Hs.666367 NM_004980 ENSG00000171385 KCND3 BRGDA9|KCND3L|KCND3S|KSHIVB|KV4.3|SCA19|SCA22 potassium voltage-gated channel subfamily D member 3 protein-coding 172.5-33 chr18 6716909 6717410 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -12557 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 173.75-48 chr4 35758285 35758902 + 0.5 NA Intergenic L1MA3|LINE|L1 485346 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 149-23 chr14 51339814 51340271 + 0.5 NA intron (NR_038358, intron 1 of 4) MLT1C|LTR|ERVL-MaLR 6649 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 154-62 chr2 218797754 218798322 + 0.5 NA intron (NM_000784, intron 1 of 8) AluSx|SINE|Alu 15891 NM_000784 1593 Hs.516700 NM_000784 ENSG00000135929 CYP27A1 CP27|CTX|CYP27 cytochrome P450 family 27 subfamily A member 1 protein-coding 150.5-50 chr18 69511116 69511505 + 0.5 NA intron (NM_152721, intron 1 of 7) intron (NM_152721, intron 1 of 7) 41379 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 169.25-46 chr4 150847139 150847598 + 0.5 NA intron (NM_001367550, intron 26 of 56) intron (NM_001367550, intron 26 of 56) 167899 NM_001199282 987 Hs.480938 NM_006726 ENSG00000198589 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS responsive beige-like anchor protein protein-coding 166.75-51 chr3 80518408 80518847 + 0.5 NA Intergenic Intergenic -246270 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 159.25-40 chr2 163751285 163751916 + 0.5 NA Intergenic Intergenic -15592 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 167-69 chr5 54698790 54699344 + 0.5 NA intron (NR_104658, intron 1 of 2) ERV3-16A3_I-int|LTR|ERVL 4257 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 155.75-81 chr4 132899923 132900395 + 0.5 NA Intergenic Intergenic 248957 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 169.25-45 chr4 116637269 116637805 + 0.5 NA Intergenic Intergenic 337812 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 158-30 chr2 4601302 4601689 + 0.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 54727 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 147-3 chr1 80148087 80148603 + 0.5 NA Intergenic LTR101_Mam|LTR|ERVL -387410 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 160.75-32 chr14 21717699 21718057 + 0.5 NA Intergenic Intergenic -46861 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 147.75-34 chr14 49237045 49237434 + 0.5 NA Intergenic THE1C|LTR|ERVL-MaLR 349141 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 198.5-47 chr5 159671471 159671921 + 0.5 NA Intergenic MSTB|LTR|ERVL-MaLR 199688 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 151-86 chr6 162695315 162695667 + 0.5 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -31641 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 155.25-12 chr10 99672366 99672828 + 0.5 NA intron (NM_001349962, intron 4 of 13) AluJb|SINE|Alu 12968 NM_001349963 57089 Hs.28326 NM_020354 ENSG00000198018 ENTPD7 LALP1 ectonucleoside triphosphate diphosphohydrolase 7 protein-coding 153.5-90 chr6 89681590 89682070 + 0.5 NA intron (NM_014611, intron 73 of 101) AluJo|SINE|Alu -43083 NM_020466 57226 Hs.177275 NM_020466 ENSG00000083099 LYRM2 DJ122O8.2 LYR motif containing 2 protein-coding 173-42 chr20 17994435 17995051 + 0.5 NA Intergenic AluJr|SINE|Alu 25725 NM_052865 92667 Hs.320823 NM_052865 ENSG00000125871 MGME1 C20orf72|DDK1|MTDPS11|bA504H3.4 mitochondrial genome maintenance exonuclease 1 protein-coding 171.75-47 chr21 19581510 19581980 + 0.5 NA Intergenic Intergenic 318010 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 158.25-82 chr5 34818722 34819315 + 0.5 NA intron (NM_015577, intron 13 of 17) intron (NM_015577, intron 13 of 17) -20146 NM_144725 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 177.75-15 chr13 83126892 83127454 + 0.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 755220 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 158.25-109 chr8 85496330 85496727 + 0.5 NA Intergenic MIRb|SINE|MIR -31613 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 160.5-76 chr4 113648170 113648759 + 0.5 NA intron (NM_001221, intron 3 of 18) intron (NM_001221, intron 3 of 18) 113274 NM_001321591 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 146-69 chr5 121325352 121325813 + 0.5 NA non-coding (NR_104999, exon 3 of 3) non-coding (NR_104999, exon 3 of 3) 3032 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 175.25-28 chr17 28711163 28711778 + 0.5 NA promoter-TSS (NM_001304952) promoter-TSS (NM_001304952) -171 NM_001366302 147011 Hs.207471 NM_152465 ENSG00000167525 PROCA1 - protein interacting with cyclin A1 protein-coding 161-58 chr3 197138457 197138963 + 0.5 NA intron (NM_001366216, intron 7 of 23) intron (NM_001366216, intron 7 of 23) 45162 NM_001366222 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 150.75-55 chr21 36999314 36999841 + 0.5 NA Intergenic L2a|LINE|L2 -6573 NM_001317768 53820 Hs.254560 NM_018962 ENSG00000183145 RIPPLY3 DSCR6 ripply transcriptional repressor 3 protein-coding 148.5-80 chr5 66917234 66917579 + 0.5 NA intron (NM_015183, intron 3 of 27) L1ME3G|LINE|L1 -41667 NM_001290226 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 200.75-6 chr10 77441735 77442371 + 0.5 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 91181 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 203.75-25 chr3 78717403 78717972 + 0.5 NA intron (NM_002941, intron 6 of 30) intron (NM_002941, intron 6 of 30) 301772 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 189-49 chr4 117523045 117523646 + 0.5 NA intron (NR_125757, intron 2 of 3) intron (NR_125757, intron 2 of 3) 94947 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 154-108 chr8 127202855 127203250 + 0.5 NA Intergenic L1ME3|LINE|L1 -5425 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 172.5-67 chr6 27541420 27541877 + 0.5 NA Intergenic Intergenic -68530 NM_001318891 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 158-55 chr4 62220951 62221321 + 0.5 NA Intergenic LTR8|LTR|ERV1 -59371 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 170.25-30 chr2 80373202 80373680 + 0.5 NA intron (NM_001282599, intron 1 of 11) intron (NM_001282599, intron 1 of 11) 60062 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 195.5-50 chr4 94806521 94807238 + 0.5 NA intron (NM_001203, intron 1 of 12) intron (NM_001203, intron 1 of 12) 48924 NM_001203 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 155.5-106 chr8 112688739 112689312 + 0.5 NA intron (NM_001363185, intron 12 of 66) intron (NM_001363185, intron 12 of 66) 45532 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 224.75-28 chr4 162168879 162169631 + 0.5 NA Intergenic Intergenic -5221 NM_001128427 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 158.5-43 chr2 65495165 65495734 + 0.5 NA Intergenic Intergenic -62850 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 180.25-61 chr6 36632452 36633017 + 0.5 NA Intergenic MER5A|DNA|hAT-Charlie -10222 NR_037491 100500885 NR_037491 ENSG00000263894 MIR3925 - microRNA 3925 ncRNA 168-51 chr3 161741165 161741776 + 0.5 NA Intergenic Intergenic 244662 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 183.25-69 chr7 39583988 39584537 + 0.5 NA intron (NM_001282446, intron 2 of 2) MER20B|DNA|hAT-Charlie 17858 NM_001282446 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 245.25-28 chr9 92368523 92369364 + 0.5 NA intron (NM_001286969, intron 3 of 6) AluJr4|SINE|Alu 35635 NM_014057 4969 Hs.109439 NM_014057 ENSG00000106809 OGN OG|OIF|SLRR3A osteoglycin protein-coding 204.25-14 chr15 77224581 77225299 + 0.5 NA non-coding (NR_026813, exon 1 of 1) non-coding (NR_026813, exon 1 of 1) 464 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 148.25-36 chr16 68528140 68528614 + 0.5 NA Intergenic Intergenic -10836 NM_001305204 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 167-53 chr3 64205034 64205597 + 0.5 NA intron (NM_001370528, intron 1 of 7) intron (NM_001370528, intron 1 of 7) 17771 NR_046702 100874243 Hs.670840 NR_046702 ENSG00000226017 PRICKLE2-AS3 - PRICKLE2 antisense RNA 3 ncRNA 172.75-15 chr11 116747986 116748570 + 0.5 NA 3' UTR (NM_001159736, exon 10 of 10) 3' UTR (NM_001159736, exon 10 of 10) 24709 NM_032725 84811 Hs.437341 NM_032725 ENSG00000137656 BUD13 Cwc26|fSAP71 BUD13 homolog protein-coding 157.25-70 chr4 81652177 81652575 + 0.5 NA Intergenic Intergenic -180469 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 154.75-45 chr2 132659191 132659702 + 0.5 NA intron (NM_144586, intron 2 of 2) intron (NM_144586, intron 2 of 2) 10759 NM_001321234 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 170.75-25 chr18 65103759 65104197 + 0.5 NA Intergenic Intergenic -646274 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 152.25-62 chr3 21004172 21004686 + 0.5 NA Intergenic MER1B|DNA|hAT-Charlie -401297 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 146.5-35 chr16 61267629 61267958 + 0.5 NA Intergenic L1MB8|LINE|L1 -212027 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 182.25-19 chr2 35114049 35114729 + 0.5 NA Intergenic L1M2|LINE|L1 -357016 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 221.75 chr1 42264953 42265546 + 0.5 NA intron (NM_001198850, intron 3 of 12) intron (NM_001198850, intron 3 of 12) 69706 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 192.75-51 chr5 5471201 5471690 + 0.5 NA intron (NM_015325, intron 15 of 18) intron (NM_015325, intron 15 of 18) 48768 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 156.5-50 chr2 52702040 52702434 + 0.5 NA TTS (NR_039630) TTS (NR_039630) 378 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 155.75-60 chr2 214251136 214251654 + 0.5 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -159659 NR_159945 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 164-67 chr5 134217406 134218001 + 0.5 NA intron (NM_002715, intron 1 of 6) intron (NM_002715, intron 1 of 6) 7851 NR_149151 5515 Hs.105818 NM_002715 ENSG00000113575 PPP2CA NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C protein phosphatase 2 catalytic subunit alpha protein-coding 161-51 chr20 13373557 13374090 + 0.5 NA Intergenic L1M4b|LINE|L1 -134136 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 217-28 chr9 30063055 30063624 + 0.5 NA Intergenic Intergenic 345115 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 203.5-60 chr6 52286252 52286825 + 0.5 NA Intergenic MIR3|SINE|MIR -1796 NR_158963 4172 Hs.179565 NM_002388 ENSG00000112118 MCM3 HCC5|P1-MCM3|P1.h|RLFB minichromosome maintenance complex component 3 protein-coding 188.5-73 chr8 134652026 134652688 + 0.5 NA intron (NM_020863, intron 2 of 15) L1MEg|LINE|L1 44198 NM_001029939 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 197.25-12 chr10 57049931 57050581 + 0.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 254303 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 169.75-56 chr4 187096643 187097211 + 0.5 NA Intergenic Intergenic -105059 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 174.25-54 chr5 141118077 141118473 + 0.5 NA Intergenic L1M4|LINE|L1 -3543 NM_018938 56131 Hs.591250 NM_018938 ENSG00000081818 PCDHB4 PCDH-BETA4 protocadherin beta 4 protein-coding 149.25-52 chr2 200853053 200853490 + 0.5 NA non-coding (NR_027855, exon 12 of 12) non-coding (NR_027855, exon 12 of 12) 11290 NM_001162407 1195 Hs.433732 NM_004071 ENSG00000013441 CLK1 CLK|CLK/STY|STY CDC like kinase 1 protein-coding 162-35 chr2 78309410 78309840 + 0.5 NA Intergenic L2b|LINE|L2 -18894 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 174.75-26 chr17 31110291 31110855 + 0.5 NA intron (NM_001042492, intron 1 of 57) L1MEg|LINE|L1 15596 NM_001128147 4763 Hs.113577 NM_000267 ENSG00000196712 NF1 NFNS|VRNF|WSS neurofibromin 1 protein-coding 174-54 chr5 73912430 73913076 + 0.5 NA intron (NM_001177693, intron 35 of 35) intron (NM_001177693, intron 35 of 35) 99207 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 181-12 chr12 12470947 12471469 + 0.5 NA TTS (NM_001330356) TTS (NM_001330356) 91655 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 159.75-103 chr9 73799082 73799424 + 0.5 NA Intergenic L1M2|LINE|L1 -572278 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 163.75-30 chr2 59597261 59597762 + 0.5 NA Intergenic Intergenic 379803 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 334-4 chr5 18470101 18470972 + 0.5 NA Intergenic Intergenic 663262 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 147.75-61 chr20 41080608 41080945 + 0.5 NA intron (NM_003286, intron 6 of 20) intron (NM_003286, intron 6 of 20) 51954 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI DNA topoisomerase I protein-coding 145.75-41 chr17 59509470 59509970 + 0.5 NA intron (NR_110813, intron 1 of 2) AluSx|SINE|Alu 17137 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 177.25-46 chr3 108506703 108507162 + 0.5 NA intron (NM_014981, intron 2 of 41) AluSg|SINE|Alu 22390 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 197.25-41 chr5 45453468 45453975 + 0.5 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 242659 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 166-11 chr11 1264489 1264857 + 0.5 NA Intergenic THE1D|LTR|ERVL-MaLR 8068 NR_106802 102466725 NR_106802 ENSG00000275669 MIR6744 hsa-mir-6744 microRNA 6744 ncRNA 161-85 chr7 159210822 159211310 + 0.5 NA Intergenic Intergenic -66109 NM_001304522 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 167.75-39 chr16 76132466 76132979 + 0.5 NA Intergenic Intergenic -144679 NM_001322181 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 166.5-58 chr4 40074680 40075216 + 0.5 NA intron (NM_001318359, intron 2 of 18) AluSz6|SINE|Alu -17749 NR_027277 344967 Hs.534633 NR_027277 ENSG00000205794 LOC344967 - acyl-CoA thioesterase 7 pseudogene pseudo 250.5-14 chr19 37728682 37729485 + 0.5 NA Intergenic Intergenic -9322 NM_032689 84775 Hs.116622 NM_032689 ENSG00000198182 ZNF607 - zinc finger protein 607 protein-coding 157-100 chr8 117362357 117362960 + 0.5 NA Intergenic Intergenic -158055 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 165.75-57 chr22 36350635 36351064 + 0.5 NA intron (NM_002473, intron 1 of 40) intron (NM_002473, intron 1 of 40) 37218 NM_002473 4627 Hs.474751 NM_002473 ENSG00000100345 MYH9 BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA myosin heavy chain 9 protein-coding 187.25-3 chr1 113655070 113655714 + 0.5 NA intron (NM_001142782, intron 15 of 20) intron (NM_001142782, intron 15 of 20) 103763 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 188.25-28 chr2 118987141 118987687 + 0.5 NA intron (NM_006770, intron 12 of 16) intron (NM_006770, intron 12 of 16) 45245 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 210-54 chr7 101132376 101132920 + 0.5 NA intron (NM_000602, intron 4 of 8) AluSq|SINE|Alu 5559 NM_000602 5054 Hs.414795 NM_000602 ENSG00000106366 SERPINE1 PAI|PAI-1|PAI1|PLANH1 serpin family E member 1 protein-coding 172.75-67 chr8 72351004 72351430 + 0.5 NA Intergenic L1PB1|LINE|L1 -99583 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 191.75-35 chr2 146981868 146982443 + 0.5 NA Intergenic Intergenic 395098 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 146.25-88 chr7 75656112 75656616 + 0.5 NA intron (NM_005338, intron 1 of 30) intron (NM_005338, intron 1 of 30) 82577 NM_001243198 3092 Hs.329266 NM_005338 ENSG00000127946 HIP1 HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma huntingtin interacting protein 1 protein-coding 207.25-24 chr17 58802103 58802595 + 0.5 NA intron (NM_014906, intron 1 of 6) L1M3|LINE|L1 46480 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 214-25 chr4 57415474 57416143 + 0.5 NA Intergenic Intergenic -10064 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 154.25-58 chr4 30341835 30342276 + 0.5 NA Intergenic Intergenic -378314 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 180.75-71 chr8 101110996 101111376 + 0.5 NA Intergenic MLT2B4|LTR|ERVL 59132 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 146.5-88 chr5 98388070 98388532 + 0.5 NA Intergenic Intergenic -227062 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 156.25-83 chr6 144523400 144523857 + 0.5 NA intron (NM_007124, intron 40 of 73) intron (NM_007124, intron 40 of 73) 117973 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 162.5-91 chr9 35743053 35743464 + 0.5 NA intron (NM_020944, intron 3 of 16) MIR|SINE|MIR 5970 NM_001330660 57704 Hs.443134 NM_020944 ENSG00000070610 GBA2 AD035|NLGase|SPG46 glucosylceramidase beta 2 protein-coding 185.5-62 chr5 164353954 164354346 + 0.5 NA Intergenic Intergenic 113252 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 206.25-12 chr12 9837059 9837740 + 0.5 NA intron (NM_001366534, intron 3 of 3) (TATATA)n|Simple_repeat|Simple_repeat 9918 NM_001366534 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 201-38 chr9 70957540 70958229 + 0.5 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -88832 NM_001007470 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 154-22 chr12 77073160 77073668 + 0.5 NA Intergenic Intergenic -7845 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 159.5-99 chr8 117307326 117307918 + 0.5 NA Intergenic MER117|DNA|hAT-Charlie 172627 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 183-65 chrX 96017039 96017505 + 0.5 NA Intergenic L1MB1|LINE|L1 320630 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 155.5-54 chr2 201861979 201862553 + 0.5 NA intron (NM_001366386, intron 10 of 13) intron (NM_001366386, intron 10 of 13) 55687 NM_001261436 65061 Hs.348711 NM_139158 ENSG00000138395 CDK15 ALS2CR7|PFTAIRE2|PFTK2 cyclin dependent kinase 15 protein-coding 164.25 chr1 40745768 40746193 + 0.5 NA intron (NM_001142589, intron 2 of 8) FLAM_C|SINE|Alu 7144 NM_001308114 4802 Hs.713051 NM_014223 ENSG00000066136 NFYC CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC nuclear transcription factor Y subunit gamma protein-coding 226.25-24 chr7 36199967 36200504 + 0.5 NA intron (NM_030636, intron 2 of 7) L1PREC2|LINE|L1 46981 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 192-49 chr5 41411487 41411891 + 0.5 NA intron (NM_001005473, intron 1 of 2) intron (NM_001005473, intron 1 of 2) 98912 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 232.5-24 chr20 950094 951018 + 0.5 NA Intergenic L1ME5|LINE|L1 -34222 NM_001322809 51378 Hs.278973 NM_015985 ENSG00000101280 ANGPT4 ANG3|ANG4 angiopoietin 4 protein-coding 148.5-18 chr12 882657 883116 + 0.5 NA intron (NM_001184985, intron 14 of 27) intron (NM_001184985, intron 14 of 27) 50190 NM_001297420 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 150-11 chr10 62364410 62364780 + 0.5 NA intron (NR_104162, intron 1 of 3) L1ME3A|LINE|L1 -9562 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 146-33 chr17 82109113 82109492 + 0.5 NA intron (NM_001367828, intron 16 of 16) intron (NM_001367828, intron 16 of 16) -11066 NM_004104 2194 Hs.83190 NM_004104 ENSG00000169710 FASN FAS|OA-519|SDR27X1 fatty acid synthase protein-coding 158.25-116 chr8 131831965 131832430 + 0.5 NA Intergenic Intergenic -71896 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 148.25-74 chr6 41824945 41825400 + 0.5 NA intron (NM_001286554, intron 1 of 5) MamTip2|DNA|hAT-Tip100 37729 NM_001134493 100188893 Hs.731633 NM_001134493 ENSG00000214736 TOMM6 OBTP|TOM6 translocase of outer mitochondrial membrane 6 protein-coding 160.75-10 chr1 196296388 196296811 + 0.5 NA intron (NM_001287820, intron 20 of 26) intron (NM_001287820, intron 20 of 26) -207884 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 206.25-6 chr10 51772117 51772735 + 0.5 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) -72831 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 191.5-40 chr4 94186805 94187487 + 0.5 NA intron (NR_125922, intron 1 of 8) MLT1F|LTR|ERVL-MaLR 20410 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 188.25-31 chr3 1569537 1570195 + 0.5 NA Intergenic L1ME1|LINE|L1 476842 NM_001349350 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 176.25-19 chr12 90943057 90943686 + 0.5 NA intron (NR_038868, intron 3 of 4) intron (NR_038868, intron 3 of 4) 11805 NR_130711 196477 Hs.128574 NM_152638 ENSG00000197651 CCER1 C12orf12 coiled-coil glutamate rich protein 1 protein-coding 225-26 chr8 14768371 14769062 + 0.5 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 84794 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 198.75-53 chr9 18148400 18148931 + 0.5 NA Intergenic Intergenic -325488 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 156.5-69 chr4 35761178 35761654 + 0.5 NA Intergenic L1P4b|LINE|L1 482523 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 221.25-3 chr1 103812700 103813207 + 0.5 NA Intergenic MER33|DNA|hAT-Charlie 63112 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 153.75-102 chr9 120070132 120070603 + 0.5 NA Intergenic Intergenic 135307 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 215.5-14 chr14 62356402 62357116 + 0.5 NA Intergenic L1PA4|LINE|L1 -216786 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 205.25-31 chr5 103863787 103864401 + 0.5 NA Intergenic Intergenic -301305 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 165.75-38 chr18 77026591 77026954 + 0.5 NA intron (NM_001025100, intron 3 of 3) AluJr|SINE|Alu -9717 NM_001025092 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 190.75-57 chr5 156468949 156469359 + 0.5 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 141990 NM_001128209 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 198.5-17 chr12 120583582 120584300 + 0.5 NA Intergenic MIR|SINE|MIR -2539 NM_015918 51367 Hs.279913 NM_015918 ENSG00000167272 POP5 HSPC004|RPP2|RPP20|hPop5 POP5 homolog, ribonuclease P/MRP subunit protein-coding 208.75-2 chr1 96934004 96934617 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -161613 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 176.5-13 chr11 83563610 83564120 + 0.5 NA intron (NM_001142699, intron 19 of 27) intron (NM_001142699, intron 19 of 27) 118560 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 156-13 chr10 58756802 58757150 + 0.5 NA intron (NM_001080512, intron 3 of 20) intron (NM_001080512, intron 3 of 20) 41961 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 153-98 chr9 112245796 112246296 + 0.5 NA intron (NM_001244896, intron 6 of 12) AluSz|SINE|Alu -70749 NM_001282640 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 197-5 chr12 75132503 75133235 + 0.5 NA intron (NM_001260499, intron 2 of 3) intron (NM_001260499, intron 2 of 3) 76879 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 149.75-47 chr2 230662681 230663203 + 0.5 NA Intergenic L2a|LINE|L2 37587 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LINC01907 - long intergenic non-protein coding RNA 1907 ncRNA 193.25-55 chr6 62584440 62585020 + 0.5 NA Intergenic L1M7|LINE|L1 -298503 NM_001350622 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 154.5-44 chr2 36860891 36861273 + 0.5 NA intron (NM_003162, intron 13 of 17) intron (NM_003162, intron 13 of 17) 105454 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 197.25-18 chr14 73157612 73158059 + 0.5 NA intron (NM_000021, intron 3 of 11) AluSz6|SINE|Alu 21328 NM_000021 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 164.75-61 chr4 74269581 74270024 + 0.5 NA intron (NR_147097, intron 8 of 9) MER110-int|LTR|ERV1 -38668 NM_001270993 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 164.25-11 chr1 214743373 214743821 + 0.5 NA Intergenic AluSg4|SINE|Alu 140402 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 171.5-98 chr8 104205120 104205719 + 0.5 NA intron (NM_001348498, intron 20 of 24) intron (NM_001348498, intron 20 of 24) -17916 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 159-51 chr3 30478441 30478857 + 0.5 NA Intergenic Intergenic -40219 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 161.5-33 chr14 52725124 52725657 + 0.5 NA intron (NR_158967, intron 14 of 14) intron (NR_158967, intron 14 of 14) -4776 NM_145251 6815 Hs.364980 NM_145251 ENSG00000198252 STYX - serine/threonine/tyrosine interacting protein protein-coding 174.5-52 chr3 97239150 97239728 + 0.5 NA intron (NM_001080448, intron 4 of 17) Tigger2|DNA|TcMar-Tigger -200168 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 171-8 chr10 11751287 11751812 + 0.5 NA intron (NM_024693, intron 3 of 4) intron (NM_024693, intron 3 of 4) 9167 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 189.5-45 chr3 188682491 188683227 + 0.5 NA intron (NM_005578, intron 6 of 10) intron (NM_005578, intron 6 of 10) -5922 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 187.75-44 chr21 31582629 31583109 + 0.5 NA Intergenic Intergenic 23636 NM_001321023 150051 Hs.708976 NM_001321023 LOC150051 - uncharacterized LOC150051 protein-coding 162 chr1 54270021 54270460 + 0.5 NA intron (NM_018070, intron 5 of 16) intron (NM_018070, intron 5 of 16) 33797 NR_103541 619518 Hs.591438 NM_001034847 ENSG00000198711 SSBP3-AS1 C1orf191|MST128|MSTP128 SSBP3 antisense RNA 1 ncRNA 207.25-51 chr7 121008388 121009010 + 0.5 NA intron (NM_001105533, intron 1 of 17) L2a|LINE|L2 19308 NM_001105533 79974 Hs.189652 NM_024913 ENSG00000106034 CPED1 C7orf58 cadherin like and PC-esterase domain containing 1 protein-coding 147-108 chr8 61857604 61858078 + 0.5 NA Intergenic L1MD1|LINE|L1 -31998 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 178.75-74 chrX 42521791 42522465 + 0.5 NA Intergenic L1MC5a|LINE|L1 256035 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 158-50 chr3 82772133 82772543 + 0.5 NA Intergenic Intergenic 786196 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 198.25-43 chr5 65828128 65828543 + 0.5 NA 3' UTR (NM_020726, exon 13 of 13) 3' UTR (NM_020726, exon 13 of 13) -98219 NM_001006600 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 149.75-77 chr5 148833044 148833550 + 0.5 NA Intergenic Intergenic 6704 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 159.5-77 chr5 53084298 53084879 + 0.5 NA intron (NR_073106, intron 27 of 29) (TTGC)n|Simple_repeat|Simple_repeat 25169 NM_004531 4338 Hs.163645 NM_004531 ENSG00000164172 MOCS2 MCBPE|MOCO1|MOCODB|MPTS molybdenum cofactor synthesis 2 protein-coding 156.75-8 chr1 190422579 190423073 + 0.5 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 53184 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 168.5-102 chr9 27488975 27489502 + 0.5 NA intron (NM_024761, intron 1 of 3) intron (NM_024761, intron 1 of 3) -35076 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 171-59 chr6 122335946 122336506 + 0.5 NA Intergenic Intergenic -63325 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 194.75-26 chr22 47278535 47279299 + 0.5 NA Intergenic Intergenic -66654 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 146-75 chr6 14706128 14706687 + 0.5 NA Intergenic Intergenic -420953 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 215-15 chr20 39843440 39844025 + 0.5 NA Intergenic Intergenic -160729 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 213-23 chr4 115805289 115805922 + 0.5 NA Intergenic Intergenic -494120 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 172.5-72 chr7 7914198 7914744 + 0.5 NA Intergenic Intergenic 54281 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 157.75-71 chr3 171396386 171396860 + 0.5 NA intron (NM_001161563, intron 1 of 31) intron (NM_001161563, intron 1 of 31) 63782 NM_001161564 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 166.5-46 chr21 24250325 24250872 + 0.5 NA Intergenic Intergenic 70779 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 217.25 chr1 82160335 82161035 + 0.5 NA Intergenic Intergenic 358232 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 152.5-3 chr1 197216841 197217336 + 0.5 NA intron (NM_001257965, intron 1 of 14) L1MB5|LINE|L1 15584 NM_001257965 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 149.5-8 chr10 9133682 9134049 + 0.5 NA Intergenic MIRb|SINE|MIR -141748 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 196.5-51 chr6 164916429 164916851 + 0.5 NA Intergenic Intergenic -94577 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 189.5-11 chr11 16064644 16065139 + 0.5 NA intron (NM_017508, intron 8 of 14) L1MA2|LINE|L1 -95270 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 152.75-41 chr18 41791073 41791645 + 0.5 NA Intergenic MIRb|SINE|MIR -163875 NM_001308020 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 221.5-30 chr20 19002997 19003560 + 0.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -173075 NR_161342 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 150-74 chr5 34913508 34914088 + 0.5 NA intron (NM_002853, intron 2 of 5) intron (NM_002853, intron 2 of 5) 1706 NR_026591 5810 Hs.38114 NM_002853 ENSG00000113456 RAD1 HRAD1|REC1 RAD1 checkpoint DNA exonuclease protein-coding 157.25-48 chr2 61498212 61498650 + 0.5 NA intron (NM_003400, intron 9 of 24) intron (NM_003400, intron 9 of 24) -27344 NM_014709 9736 Hs.644708 NM_014709 ENSG00000115464 USP34 - ubiquitin specific peptidase 34 protein-coding 203.25-33 chr5 34582872 34583445 + 0.5 NA Intergenic L1ME4c|LINE|L1 -73170 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 168.75-24 chr15 26203331 26203918 + 0.5 NA Intergenic Intergenic 87811 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 163.25-17 chr11 60609027 60609507 + 0.5 NA Intergenic Intergenic -6484 NR_026946 283197 Hs.372650 NM_174939 ENSG00000181995 LINC00301 C11orf64|NCRNA00301 long intergenic non-protein coding RNA 301 ncRNA 153.5-17 chr11 13216237 13216591 + 0.5 NA Intergenic Intergenic -60238 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 188.5-41 chr3 132869018 132869751 + 0.5 NA intron (NR_002811, intron 10 of 10) MER58A|DNA|hAT-Charlie -146925 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 155.75-51 chr2 31730774 31731193 + 0.5 NA Intergenic L1MA4|LINE|L1 72997 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 152.5-55 chr2 158009373 158009909 + 0.5 NA intron (NM_001135098, intron 1 of 8) intron (NM_001135098, intron 1 of 8) 14462 NM_001135098 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 168.75-18 chr11 72444366 72444721 + 0.5 NA Intergenic L1ME1|LINE|L1 -9859 NM_001258394 81570 Hs.523877 NM_030813 ENSG00000162129 CLPB ANKCLB|HSP78|MEGCANN|MGCA7|SKD3 ClpB homolog, mitochondrial AAA ATPase chaperonin protein-coding 168-71 chr9 126991571 126992128 + 0.5 NA intron (NM_001190729, intron 4 of 17) intron (NM_001190729, intron 4 of 17) 29624 NM_001190728 9649 Hs.432842 NM_014636 ENSG00000136828 RALGPS1 RALGEF2|RALGPS1A Ral GEF with PH domain and SH3 binding motif 1 protein-coding 157.5-92 chr6 75133269 75133717 + 0.5 NA intron (NM_080645, intron 18 of 50) intron (NM_080645, intron 18 of 50) -4711 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 172.5-63 chr5 135448581 135449160 + 0.5 NA 3' UTR (NM_001099221, exon 2 of 2) 3' UTR (NM_001099221, exon 2 of 2) -1522 NM_130848 140947 Hs.152477 NM_130848 ENSG00000251380 DCANP1 C5orf20|DCNP1 dendritic cell associated nuclear protein protein-coding 213-15 chr20 50428102 50428695 + 0.5 NA Intergenic Intergenic -81923 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 189-8 chr10 62667074 62667547 + 0.5 NA intron (NM_199451, intron 7 of 7) MLT1L|LTR|ERVL-MaLR -137410 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 170.75-59 chr6 57229183 57229794 + 0.5 NA Intergenic AluSg|SINE|Alu -7174 NM_001278666 51715 Hs.555016 NM_016277 ENSG00000112210 RAB23 HSPC137 RAB23, member RAS oncogene family protein-coding 147.5-64 chr3 149481000 149481489 + 0.5 NA intron (NM_004617, intron 2 of 4) intron (NM_004617, intron 2 of 4) 6547 NM_004617 7104 Hs.133527 NM_004617 ENSG00000169903 TM4SF4 ILTMP|il-TMP transmembrane 4 L six family member 4 protein-coding 183-37 chr4 164140867 164141436 + 0.5 NA intron (NM_001166373, intron 1 of 7) intron (NM_001166373, intron 1 of 7) 56560 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 152-98 chr8 125750621 125751115 + 0.5 NA Intergenic Intergenic 200329 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 200.25-53 chr8 106291826 106292303 + 0.5 NA intron (NM_018002, intron 1 of 15) MER44C|DNA|TcMar-Tigger 21886 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 148.75-80 chr5 117840524 117840912 + 0.5 NA intron (NR_104997, intron 1 of 2) AluSc5|SINE|Alu 110357 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 203.75-19 chr3 29767383 29768163 + 0.5 NA intron (NM_001003792, intron 6 of 13) intron (NM_001003792, intron 6 of 13) 166383 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 187.75-23 chr15 76829886 76830631 + 0.5 NA intron (NR_148227, intron 5 of 32) L2b|LINE|L2 31686 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 168.25-79 chr9 7127642 7128177 + 0.5 NA intron (NR_148679, intron 19 of 22) L1MC4|LINE|L1 370559 NR_148679 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 164.75-25 chr16 58232002 58232466 + 0.5 NA Intergenic Intergenic -17702 NM_001142302 29070 Hs.11614 NM_014157 ENSG00000103021 CCDC113 HSPC065 coiled-coil domain containing 113 protein-coding 156.25-34 chr19 11528121 11528469 + 0.5 NA intron (NM_001142465, intron 1 of 5) AluJo|SINE|Alu 570 NM_001243204 51295 Hs.515146 NM_016581 ENSG00000130159 ECSIT SITPEC ECSIT signalling integrator protein-coding 198.75-30 chr2 66899929 66900444 + 0.5 NA Intergenic Intergenic -4250 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 147.5-18 chr12 53714614 53715056 + 0.5 NA intron (NM_001143682, intron 9 of 13) intron (NM_001143682, intron 9 of 13) 12617 NM_020898 57658 Hs.156667 NM_020898 ENSG00000012822 CALCOCO1 Cocoa|PP13275|calphoglin calcium binding and coiled-coil domain 1 protein-coding 207.5-41 chr7 89112577 89113241 + 0.5 NA intron (NM_181646, intron 1 of 3) L2|LINE|L2 -317172 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 179.5-2 chr1 108355750 108356394 + 0.5 NA Intergenic L1MEc|LINE|L1 -94210 NM_001143987 653149 Hs.712226 NM_001143987 ENSG00000186086 NBPF6 - NBPF member 6 protein-coding 157.75-103 chr7 18612253 18612778 + 0.5 NA intron (NM_001321893, intron 7 of 11) intron (NM_001321893, intron 7 of 11) 103245 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 146.75-63 chr21 14478296 14478826 + 0.5 NA Intergenic Intergenic 67754 NM_022136 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 224.75-31 chr5 41363299 41363916 + 0.5 NA intron (NM_001005473, intron 2 of 2) intron (NM_001005473, intron 2 of 2) -102138 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 180-60 chr7 3354199 3354652 + 0.5 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 53173 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 210-4 chr11 18353134 18353677 + 0.5 NA intron (NM_001142307, intron 12 of 15) L2c|LINE|L2 30838 NM_005316 2965 Hs.577202 NM_005316 ENSG00000110768 GTF2H1 BTF2|P62|TFB1|TFIIH general transcription factor IIH subunit 1 protein-coding 246.75-17 chr5 167074145 167074828 + 0.5 NA intron (NM_001122679, intron 1 of 29) intron (NM_001122679, intron 1 of 29) 1244 NM_001122679 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 185.75-2 chr1 96720564 96721219 + 0.5 NA promoter-TSS (NM_021190) promoter-TSS (NM_021190) -714 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 195.25-66 chr9 70965874 70966350 + 0.5 NA intron (NM_001366143, intron 1 of 25) L1PA13|LINE|L1 -97060 NM_001007470 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 167.25-14 chr11 106567965 106568539 + 0.5 NA Intergenic L2a|LINE|L2 316845 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 155.75-73 chr4 15064985 15065423 + 0.5 NA intron (NM_182646, intron 9 of 9) L1ME4b|LINE|L1 62723 NM_001177384 132864 Hs.656937 NM_182485 ENSG00000137449 CPEB2 CPE-BP2|CPEB-2|hCPEB-2 cytoplasmic polyadenylation element binding protein 2 protein-coding 151-40 chr2 64139451 64139963 + 0.5 NA intron (NM_020651, intron 1 of 6) L2a|LINE|L2 4713 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 168.25-31 chr19 24382659 24383323 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -219544 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 161-40 chr18 60671146 60671506 + 0.5 NA Intergenic Intergenic -298551 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 168-22 chr15 27850495 27851094 + 0.5 NA intron (NM_001300984, intron 21 of 22) intron (NM_001300984, intron 21 of 22) 248521 NM_000275 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 197.5-18 chr14 52885843 52886563 + 0.5 NA intron (NM_006832, intron 4 of 14) L1M5|LINE|L1 64847 NM_001135000 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 201-22 chr22 28475278 28475993 + 0.5 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 15766 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 153-13 chr12 4196399 4196995 + 0.5 NA Intergenic Intergenic -77065 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 153.25-101 chr6 23417520 23417934 + 0.5 NA Intergenic Intergenic -699803 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 192.5-4 chr10 20446580 20447089 + 0.5 NA Intergenic Intergenic -105136 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 191-34 chr22 47755483 47755975 + 0.5 NA intron (NR_122046, intron 8 of 8) MLT1I|LTR|ERVL-MaLR 124055 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 238.25-8 chr15 78488066 78488745 + 0.5 NA intron (NM_001354994, intron 15 of 21) intron (NM_001354994, intron 15 of 21) -19159 NM_001083612 123688 Hs.307962 NM_001013619 ENSG00000188266 HYKK AGPHD1 hydroxylysine kinase protein-coding 150-86 chr8 87758517 87759105 + 0.5 NA Intergenic Intergenic 115204 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 178-3 chr1 216357206 216357729 + 0.5 NA intron (NM_206933, intron 4 of 71) intron (NM_206933, intron 4 of 71) 65929 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 151.75-20 chr11 125029065 125029445 + 0.5 NA intron (NM_025004, intron 13 of 15) MLT2A1|LTR|ERVL -34050 NM_198277 219855 Hs.352661 NM_198277 ENSG00000134955 SLC37A2 pp11662 solute carrier family 37 member 2 protein-coding 196.5-17 chr14 58330001 58330506 + 0.5 NA intron (NM_002892, intron 11 of 23) intron (NM_002892, intron 11 of 23) 31698 NM_002892 5926 Hs.161000 NM_002892 ENSG00000032219 ARID4A RBBP-1|RBBP1|RBP-1|RBP1 AT-rich interaction domain 4A protein-coding 193.75-11 chr11 34212459 34213177 + 0.5 NA intron (NM_145804, intron 1 of 16) intron (NM_145804, intron 1 of 16) 107189 NM_001144030 55226 Hs.577281 NM_024662 ENSG00000135372 NAT10 ALP|Kre33|NET43 N-acetyltransferase 10 protein-coding 159-60 chr4 57157955 57158465 + 0.5 NA intron (NR_034081, intron 1 of 4) intron (NR_034081, intron 1 of 4) -47825 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 173.25-12 chr11 88024969 88025450 + 0.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 150234 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 165.25-9 chr10 97821074 97821624 + 0.5 NA Intergenic Intergenic 28449 NR_108035 100505561 Hs.351904 NR_108035 ENSG00000227356 LINC00866 - long intergenic non-protein coding RNA 866 ncRNA 179.5-58 chr4 97610843 97611204 + 0.5 NA intron (NM_174952, intron 10 of 10) intron (NM_174952, intron 10 of 10) 244097 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 179.75-41 chr4 43270357 43270877 + 0.5 NA Intergenic Intergenic 221926 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 162.75-82 chr8 58928963 58929405 + 0.5 NA intron (NM_014729, intron 3 of 8) intron (NM_014729, intron 3 of 8) 189963 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 174-38 chr3 88501258 88501655 + 0.5 NA Intergenic Intergenic 163000 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 152.25-59 chr22 26406084 26406459 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -22989 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 201.25-51 chr9 24035022 24035501 + 0.5 NA Intergenic Intergenic -184660 NM_001351460 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 167.75-28 chr14 53332250 53332810 + 0.5 NA Intergenic Intergenic 179176 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 169.25-30 chr2 189600127 189600695 + 0.5 NA Intergenic Intergenic -19600 NM_014585 30061 Hs.643005 NM_014585 ENSG00000138449 SLC40A1 FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3 solute carrier family 40 member 1 protein-coding 150.5-55 chr2 24378908 24379500 + 0.5 NA Intergenic AluSp|SINE|Alu -18668 NM_019595 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 185.75-49 chr22 26410528 26411194 + 0.5 NA Intergenic Intergenic -18399 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 207-43 chr5 163379813 163380507 + 0.5 NA Intergenic AluSx|SINE|Alu -57411 NM_001364019 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 167.25-81 chr8 86165107 86165688 + 0.5 NA Intergenic L2a|LINE|L2 64984 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 185.25-13 chr12 62374837 62375425 + 0.5 NA intron (NM_001351165, intron 10 of 23) intron (NM_001351165, intron 10 of 23) -91695 NM_001278470 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 195.5-24 chr16 67902480 67903112 + 0.5 NA intron (NM_006742, intron 1 of 2) intron (NM_006742, intron 1 of 2) 9542 NM_006742 5681 Hs.513683 NM_006742 ENSG00000159792 PSKH1 - protein serine kinase H1 protein-coding 162-60 chr4 155821464 155821969 + 0.5 NA Intergenic MER61B|LTR|ERV1 44561 NM_017419 51802 Hs.381349 NM_017419 ENSG00000256394 ASIC5 ACCN5|HINAC|INAC acid sensing ion channel subunit family member 5 protein-coding 176.25-72 chr9 107616486 107617027 + 0.5 NA Intergenic Intergenic -126987 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 210-18 chr18 11525712 11526291 + 0.5 NA Intergenic Intergenic 35953 NR_110778 101927433 Hs.331210 NR_110778 ENSG00000267252 LINC01255 - long intergenic non-protein coding RNA 1255 ncRNA 149-33 chr19 6795603 6796061 + 0.5 NA intron (NM_001258206, intron 1 of 25) AluSx4|SINE|Alu 23124 NM_005428 7409 Hs.116237 NM_005428 ENSG00000141968 VAV1 VAV vav guanine nucleotide exchange factor 1 protein-coding 175-12 chr13 83716422 83716926 + 0.5 NA Intergenic Intergenic 165719 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 213.25-32 chr4 30879069 30879608 + 0.5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 158969 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 147.5-107 chr8 122513272 122513709 + 0.5 NA intron (NR_131202, intron 2 of 3) MIRc|SINE|MIR 55154 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 195.75-57 chr5 4358522 4359025 + 0.5 NA Intergenic Intergenic -414708 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 171-10 chr10 105744500 105745006 + 0.5 NA intron (NR_120625, intron 3 of 3) MIR|SINE|MIR 75580 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 207.5-45 chr8 136749802 136750384 + 0.5 NA intron (NR_147196, intron 2 of 5) L1M3b|LINE|L1 219295 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 147.5-82 chr5 120719213 120719718 + 0.5 NA Intergenic Intergenic 188001 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 163-82 chr8 88705911 88706430 + 0.5 NA Intergenic Intergenic -378687 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 170.5-15 chr13 42258990 42259619 + 0.5 NA Intergenic Intergenic -12848 NM_016248 11215 Hs.105105 NM_016248 ENSG00000023516 AKAP11 AKAP-11|AKAP220|PPP1R44|PRKA11 A-kinase anchoring protein 11 protein-coding 179.25-56 chr5 7582989 7583389 + 0.5 NA intron (NM_020546, intron 3 of 24) L1MEf|LINE|L1 187051 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 193.5-71 chr7 84848883 84849617 + 0.5 NA Intergenic MSTA|LTR|ERVL-MaLR 272681 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 146-36 chr18 22576581 22577113 + 0.5 NA Intergenic Intergenic -158932 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 155-63 chr3 152818515 152819021 + 0.5 NA Intergenic L1MC1|LINE|L1 -16363 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 217.5-6 chr10 66828025 66828600 + 0.5 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -97724 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 206.75-33 chr20 13148328 13148828 + 0.5 NA intron (NM_001349945, intron 10 of 12) intron (NM_001349945, intron 10 of 12) -72696 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 227.25-17 chr17 70301482 70302144 + 0.5 NA Intergenic L1MCc|LINE|L1 132278 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 197.25-35 chr4 45069426 45069998 + 0.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR -343078 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 213-34 chr8 126956414 126957240 + 0.5 NA Intergenic MIR|SINE|MIR -56327 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 161-26 chr13 54974564 54975113 + 0.5 NA Intergenic LTR49-int|LTR|ERV1 -199616 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 178.5-9 chr10 114945264 114945967 + 0.5 NA intron (NM_139169, intron 2 of 7) MER30|DNA|hAT-Charlie 7420 NM_139169 142940 Hs.21187 NM_139169 ENSG00000165832 TRUB1 PUS4 TruB pseudouridine synthase family member 1 protein-coding 181.75-28 chr15 97662831 97663268 + 0.5 NA Intergenic L1ME2|LINE|L1 -102351 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 200.5-64 chr9 91909047 91909625 + 0.5 NA intron (NM_001318204, intron 1 of 7) intron (NM_001318204, intron 1 of 7) 40892 NM_001318204 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 155.5-5 chr1 222221061 222221545 + 0.5 NA Intergenic LTR19A|LTR|ERV1 -242783 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 149-67 chr3 119408174 119408653 + 0.5 NA intron (NM_020754, intron 10 of 11) intron (NM_020754, intron 10 of 11) 55202 NM_018266 55254 Hs.594171 NM_018266 ENSG00000176142 TMEM39A - transmembrane protein 39A protein-coding 179.5-37 chr2 50754605 50755197 + 0.5 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -58639 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 240-7 chr12 115876649 115877156 + 0.5 NA Intergenic MIRb|SINE|MIR 271752 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 171.75-22 chr13 89793281 89793740 + 0.5 NA Intergenic L1M2|LINE|L1 -229097 NR_046991 100874139 Hs.742173 NR_046991 LINC00353 - long intergenic non-protein coding RNA 353 ncRNA 169.5-57 chr3 105724338 105724757 + 0.5 NA intron (NM_001321822, intron 9 of 19) MIRb|SINE|MIR 143044 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 314.75-7 chr7 32575893 32576876 + 0.5 NA intron (NM_015060, intron 13 of 15) intron (NM_015060, intron 13 of 15) 80895 NM_015060 23080 Hs.128056 NM_015060 ENSG00000105778 AVL9 KIAA0241 AVL9 cell migration associated protein-coding 160.5-23 chr12 26677233 26677699 + 0.5 NA intron (NM_002223, intron 13 of 56) AluJb|SINE|Alu 155728 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 155.25-42 chr2 58988485 58989057 + 0.5 NA intron (NR_033873, intron 6 of 13) L1MEd|LINE|L1 -228937 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 268.5-10 chr17 68720288 68721049 + 0.5 NA Intergenic Intergenic 92514 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 211.5-18 chr15 95708806 95709453 + 0.5 NA Intergenic Intergenic 276036 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 160.75-23 chr11 107560150 107560593 + 0.5 NA intron (NM_138775, intron 2 of 11) MIRb|SINE|MIR 5364 NM_138775 91801 Hs.503763 NM_138775 ENSG00000137760 ALKBH8 ABH8|TRM9|TRMT9|TRMT9A alkB homolog 8, tRNA methyltransferase protein-coding 197.75-22 chr15 67815974 67816447 + 0.5 NA Intergenic L1MB8|LINE|L1 -9299 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 168.75-81 chr5 37993327 37993830 + 0.5 NA Intergenic Intergenic -32119 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 209-23 chr2 88554142 88554924 + 0.5 NA intron (NR_110236, intron 2 of 2) intron (NR_110236, intron 2 of 2) 15813 NR_110236 101928371 Hs.738045 NR_110236 ENSG00000225420 LOC101928371 - uncharacterized LOC101928371 ncRNA 188-35 chr2 211118039 211118713 + 0.5 NA Intergenic Intergenic 500805 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 191-38 chr4 138947396 138948062 + 0.5 NA intron (NR_133945, intron 2 of 2) intron (NR_133945, intron 2 of 2) 64917 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 225.25-32 chr6 35493361 35494194 + 0.5 NA intron (NM_003214, intron 1 of 12) intron (NM_003214, intron 1 of 12) 3302 NM_003214 7005 Hs.485205 NM_003214 ENSG00000007866 TEAD3 DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5 TEA domain transcription factor 3 protein-coding 198.5-45 chr5 143774300 143774807 + 0.5 NA Intergenic MER102b|DNA|hAT-Charlie -37608 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 163-36 chr16 9523192 9523684 + 0.5 NA Intergenic AluSx|SINE|Alu -67933 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 164-77 chr7 41734755 41735208 + 0.5 NA intron (NR_027118, intron 2 of 3) intron (NR_027118, intron 2 of 3) -31891 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 183.25-78 chr8 132466658 132467261 + 0.5 NA intron (NM_004519, intron 1 of 14) LTR16C|LTR|ERVL 14136 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 153.75-66 chr5 98821358 98821764 + 0.5 NA Intergenic L1PB1|LINE|L1 47898 NM_001366508 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 156 chr1 11614426 11614841 + 0.5 NA Intergenic Intergenic 5102 NR_104624 101929181 Hs.568616 NR_104624 ENSG00000235643 LINC01647 - long intergenic non-protein coding RNA 1647 ncRNA 171.75-42 chr2 171491420 171492009 + 0.5 NA Intergenic Intergenic -30519 NM_001256909 79901 Hs.221941 NM_024843 ENSG00000071967 CYBRD1 CYB561A2|DCYTB|FRRS3 cytochrome b reductase 1 protein-coding 160.25-47 chr3 131305319 131305904 + 0.5 NA intron (NM_001353043, intron 17 of 17) L1PA15|LINE|L1 -56234 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 150.75-25 chr15 94693651 94694134 + 0.5 NA Intergenic L2c|LINE|L2 -161471 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 155-50 chr22 27439675 27440073 + 0.5 NA Intergenic Intergenic 129223 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 149-61 chr3 8212630 8213173 + 0.5 NA Intergenic THE1D|LTR|ERVL-MaLR -196594 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 181.5-15 chr11 91386080 91386682 + 0.5 NA Intergenic Intergenic -517179 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 151.25-71 chr4 95117355 95117677 + 0.5 NA intron (NM_001256792, intron 4 of 10) AluJo|SINE|Alu 26025 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 237.25-17 chr5 121510034 121510658 + 0.5 NA Intergenic AluSz6|SINE|Alu 187796 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 146.75-101 chr7 16235444 16235889 + 0.5 NA intron (NM_001101426, intron 8 of 9) intron (NM_001101426, intron 8 of 9) 25180 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 192.75-43 chr4 55111060 55111572 + 0.5 NA intron (NM_002253, intron 7 of 29) L2c|LINE|L2 14279 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 191.5-20 chr14 46522152 46522752 + 0.5 NA Intergenic L1ME3A|LINE|L1 51093 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 155.5-6 chr1 239406970 239407493 + 0.5 NA intron (NM_001347716, intron 1 of 7) L2a|LINE|L2 20663 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 205.5-37 chr5 59189524 59190072 + 0.5 NA intron (NM_006203, intron 3 of 14) intron (NM_006203, intron 3 of 14) 86317 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 165.25-52 chr5 40081044 40081653 + 0.5 NA Intergenic L2c|LINE|L2 29057 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 164.25-5 chr1 98996292 98996904 + 0.5 NA intron (NM_001037317, intron 1 of 5) intron (NM_001037317, intron 1 of 5) -7678 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 157-78 chr5 134815849 134816348 + 0.5 NA intron (NM_001300860, intron 18 of 22) intron (NM_001300860, intron 18 of 22) -29582 NM_152409 134553 Hs.708536 NM_152409 ENSG00000181904 C5orf24 - chromosome 5 open reading frame 24 protein-coding 166.5-62 chr5 12232475 12232936 + 0.5 NA Intergenic Intergenic -328259 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 202-9 chr12 129361899 129362540 + 0.5 NA intron (NM_133448, intron 3 of 8) Tigger18a|DNA|TcMar-Tigger 153618 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 217-6 chr10 128479171 128479660 + 0.5 NA Intergenic Intergenic 193465 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 179.25-45 chr21 23814678 23815122 + 0.5 NA Intergenic GA-rich|Low_complexity|Low_complexity -430065 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 287.25-10 chr4 136080002 136080984 + 0.5 NA Intergenic Intergenic -166813 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 161.5-89 chr8 115029302 115029773 + 0.5 NA Intergenic Intergenic 638476 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 169-75 chr8 137551371 137551960 + 0.5 NA Intergenic L1MC3|LINE|L1 -138077 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 153.5-96 chr7 30067502 30067909 + 0.5 NA intron (NM_001350974, intron 12 of 12) L1ME3C|LINE|L1 22620 NM_001363474 84725 Hs.233495 NM_032639 ENSG00000106086 PLEKHA8 FAPP2 pleckstrin homology domain containing A8 protein-coding 150.5-128 chrX 46650007 46650579 + 0.5 NA intron (NM_001257291, intron 10 of 16) intron (NM_001257291, intron 10 of 16) 76528 NM_019886 56548 Hs.129955 NM_019886 ENSG00000147119 CHST7 C6ST-2|GST-5 carbohydrate sulfotransferase 7 protein-coding 162.25-86 chr7 49897484 49898084 + 0.5 NA intron (NR_136188, intron 2 of 3) L1MD2|LINE|L1 122451 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 194-7 chr10 25562046 25562692 + 0.5 NA intron (NM_020752, intron 6 of 10) L1MDa|LINE|L1 -89343 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 158.75-76 chr7 65237457 65237927 + 0.5 NA Intergenic Intergenic 96662 NR_146905 285905 Hs.567827 NM_182596 ENSG00000164669 INTS4P1 INTS4L1 integrator complex subunit 4 pseudogene 1 pseudo 148-36 chr16 48757244 48757696 + 0.5 NA Intergenic L1MB2|LINE|L1 -147290 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 192-18 chr14 96714763 96715412 + 0.5 NA Intergenic Tigger2a|DNA|TcMar-Tigger -26104 NR_146552 105370646 NR_146552 ENSG00000258979 LINC02299 - long intergenic non-protein coding RNA 2299 ncRNA 158.25-53 chr2 84955886 84956479 + 0.5 NA Intergenic AluSq2|SINE|Alu -14979 NM_020122 56888 Hs.654968 NM_020122 ENSG00000176407 KCMF1 DEBT91|FIGC|PCMF|ZZZ1 potassium channel modulatory factor 1 protein-coding 170.75-6 chr11 84333454 84334057 + 0.5 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -16416 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 154-41 chr18 13647056 13647539 + 0.5 NA 3' UTR (NM_181481, exon 6 of 6) 3' UTR (NM_181481, exon 6 of 6) 5539 NM_001276251 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 216.75-28 chr5 95858961 95859725 + 0.5 NA non-coding (NR_026936, exon 3 of 3) non-coding (NR_026936, exon 3 of 3) 7111 NR_026936 202299 Hs.8373 NM_175616 ENSG00000236882 LINC01554 C5orf27|FIS long intergenic non-protein coding RNA 1554 ncRNA 200.5-53 chr6 101342850 101343610 + 0.5 NA Intergenic Intergenic -55755 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 147.5-16 chr12 13874827 13875339 + 0.5 NA intron (NM_000834, intron 1 of 12) L1PA12|LINE|L1 105273 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 171.5-79 chr5 18941859 18942433 + 0.5 NA Intergenic L1MC3|LINE|L1 944126 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 148.5-11 chr1 244293549 244293930 + 0.5 NA Intergenic AluJr|SINE|Alu -58896 NM_001276348 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 184.75-58 chr4 110529517 110530142 + 0.5 NA intron (NM_001977, intron 10 of 19) AluSq2|SINE|Alu 53674 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 155.75-37 chr15 58594874 58595442 + 0.5 NA 3' UTR (NM_001110, exon 16 of 16) 3' UTR (NM_001110, exon 16 of 16) -96423 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 150.25-45 chr18 44803098 44803441 + 0.5 NA intron (NM_001130110, intron 2 of 3) intron (NM_001130110, intron 2 of 3) 122381 NM_015559 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding 157.5-52 chr2 236944779 236945375 + 0.5 NA Intergenic Intergenic 111090 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 195.25-20 chr18 4672485 4673030 + 0.5 NA Intergenic L1MEd|LINE|L1 -217450 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 192.5-21 chr19 28261022 28261478 + 0.5 NA Intergenic L1PB|LINE|L1 -345438 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 145.75-9 chr10 28808705 28809069 + 0.5 NA TTS (NR_120652) TTS (NR_120652) -12837 NR_038374 100507605 Hs.119207 NR_038374 ENSG00000235824 LINC00837 - long intergenic non-protein coding RNA 837 ncRNA 170-33 chr2 139580184 139580631 + 0.5 NA Intergenic L1MEc|LINE|L1 683083 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 218.25-6 chr10 18324455 18325197 + 0.5 NA intron (NM_000724, intron 1 of 12) AluSz|SINE|Alu -15883 NM_201590 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 171.5-65 chr3 128113032 128113553 + 0.5 NA intron (NM_003707, intron 2 of 10) MIR|SINE|MIR 10520 NM_003707 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 201-26 chr4 106345533 106346263 + 0.5 NA intron (NM_001142416, intron 6 of 6) A-rich|Low_complexity|Low_complexity 21537 NM_001195138 100507096 Hs.722750 NM_001195138 ENSG00000250298 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 162.5-56 chr3 54376965 54377598 + 0.5 NA intron (NM_018398, intron 3 of 37) intron (NM_018398, intron 3 of 37) 254729 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 154.75-109 chr9 110671524 110671987 + 0.5 NA intron (NM_001166281, intron 1 of 11) intron (NM_001166281, intron 1 of 11) 2964 NM_001166281 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 198.75-12 chr12 25546770 25547268 + 0.5 NA intron (NM_001145727, intron 1 of 7) intron (NM_001145727, intron 1 of 7) 6264 NM_001256266 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 185.25-62 chr4 181798878 181799505 + 0.5 NA Intergenic Intergenic 30782 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 148-14 chr10 69205343 69205698 + 0.5 NA intron (NM_001323586, intron 14 of 15) AluJr4|SINE|Alu -14812 NM_025130 80201 Hs.522988 NM_025130 ENSG00000156510 HKDC1 - hexokinase domain containing 1 protein-coding 237.25-6 chr2 5212505 5213284 + 0.5 NA Intergenic Intergenic 478224 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 147.25-85 chr6 95525390 95525896 + 0.5 NA Intergenic Intergenic 51808 NR_104136 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 153.25-35 chr14 54571469 54571874 + 0.5 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 4059 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 149.5-88 chr7 84651007 84651542 + 0.5 NA Intergenic Intergenic 118798 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 187.25-20 chr13 55428226 55428678 + 0.5 NA Intergenic L1M2|LINE|L1 253998 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 151-2 chr1 150409092 150409565 + 0.5 NA intron (NM_015203, intron 1 of 10) intron (NM_015203, intron 1 of 10) 45217 NM_001297674 23248 Hs.213666 NM_015203 ENSG00000163125 RPRD2 HSPC099|KIAA0460 regulation of nuclear pre-mRNA domain containing 2 protein-coding 152.25-87 chr6 27037165 27037652 + 0.5 NA Intergenic Intergenic -17102 NR_026776 100270746 Hs.590428 NR_026776 LOC100270746 - uncharacterized LOC100270746 ncRNA 220.75-44 chrX 100215029 100215876 + 0.5 NA Intergenic Intergenic 194821 NM_001105243 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 180.5-7 chr10 44030754 44031422 + 0.5 NA Intergenic Intergenic 118686 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 182-51 chr7 4442386 4443102 + 0.5 NA Intergenic Intergenic -239551 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 156-37 chr2 4904626 4905235 + 0.5 NA Intergenic Intergenic -248708 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 168.75-9 chr10 50424048 50424440 + 0.5 NA intron (NM_147156, intron 6 of 10) intron (NM_147156, intron 6 of 10) -175634 NM_019893 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 182.5-8 chr11 37563378 37563899 + 0.5 NA Intergenic Intergenic -374963 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 215.5-17 chr15 41484222 41484775 + 0.5 NA TTS (NM_015138) TTS (NM_015138) -9376 NM_002220 3706 Hs.2722 NM_002220 ENSG00000137825 ITPKA IP3-3KA|IP3KA inositol-trisphosphate 3-kinase A protein-coding 190.25-35 chr5 52198811 52199358 + 0.5 NA Intergenic Intergenic 191053 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 150.75-48 chr20 13401816 13402413 + 0.5 NA intron (NM_017714, intron 13 of 13) intron (NM_017714, intron 13 of 13) -162427 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 161.5-87 chr6 166988670 166989158 + 0.5 NA Intergenic LTR19C|LTR|ERV1 8998 NR_037504 100500857 NR_037504 ENSG00000265828 MIR3939 mir-3939 microRNA 3939 ncRNA 161.5-58 chr3 5393088 5393608 + 0.5 NA Intergenic L2a|LINE|L2 -143093 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 230.75-5 chr10 4641709 4642315 + 0.5 NA Intergenic Intergenic -14144 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 148-4 chr1 80970128 80970496 + 0.5 NA Intergenic Intergenic 329025 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 179-51 chr6 72312425 72312965 + 0.5 NA intron (NM_001350433, intron 19 of 25) intron (NM_001350433, intron 19 of 25) -54051 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 242.75-7 chr14 63945867 63946464 + 0.5 NA intron (NM_015180, intron 6 of 114) AluJb|SINE|Alu 93161 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 154.5-27 chr14 56046480 56046963 + 0.5 NA Intergenic L2|LINE|L2 -71690 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 166.5-97 chr9 107339053 107339594 + 0.5 NA Intergenic Intergenic 54554 NM_001244713 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 171-20 chr14 58490193 58490587 + 0.5 NA intron (NM_001329947, intron 25 of 29) intron (NM_001329947, intron 25 of 29) 50709 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 150.75-42 chr2 180752143 180752643 + 0.5 NA intron (NR_104324, intron 3 of 4) L1MD|LINE|L1 60289 NR_104321 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 162.75-36 chr18 75237085 75237559 + 0.5 NA intron (NM_001308210, intron 1 of 1) AluJb|SINE|Alu 25793 NM_001308210 10194 Hs.284217 NM_005786 ENSG00000179981 TSHZ1 CAA|NY-CO-33|SDCCAG33|TSH1 teashirt zinc finger homeobox 1 protein-coding 162-78 chr8 109555684 109556150 + 0.5 NA intron (NM_198120, intron 4 of 6) HAL1|LINE|L1 15291 NM_001278938 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 175.5-7 chr10 15740434 15740977 + 0.5 NA Intergenic Intergenic -20370 NM_001291494 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 173-29 chr14 37416270 37416897 + 0.5 NA intron (NM_138731, intron 11 of 13) Tigger3a|DNA|TcMar-Tigger 178666 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 188.75-2 chr1 96472624 96473258 + 0.5 NA Intergenic L2|LINE|L2 -98816 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 208.5-2 chr1 196466371 196467051 + 0.5 NA intron (NM_001287820, intron 7 of 26) MIRb|SINE|MIR 115770 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 299.5-5 chr14 62565253 62566252 + 0.5 NA Intergenic L2a|LINE|L2 -425779 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 199.75-11 chr11 42890037 42890488 + 0.5 NA Intergenic L1MEd|LINE|L1 379107 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 231.5-18 chr2 230774439 230775308 + 0.5 NA intron (NM_001130850, intron 2 of 8) intron (NM_001130850, intron 2 of 8) 61325 NM_001130850 51719 Hs.603930 NM_016289 ENSG00000135932 CAB39 CGI-66|MO25 calcium binding protein 39 protein-coding 176-27 chr2 6756568 6757120 + 0.5 NA intron (NR_038369, intron 1 of 5) intron (NR_038369, intron 1 of 5) 13467 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 155.25-39 chr2 21963042 21963525 + 0.5 NA Intergenic Intergenic -252631 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 166.25-16 chr11 84122823 84123273 + 0.5 NA intron (NM_001142699, intron 9 of 27) intron (NM_001142699, intron 9 of 27) 150232 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 148.75-103 chr8 134303687 134304012 + 0.5 NA Intergenic Intergenic -294222 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 208.25-27 chr3 191471263 191471817 + 0.5 NA intron (NR_120606, intron 1 of 6) MER2|DNA|TcMar-Tigger 10377 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 227.75-33 chr7 112671170 112671724 + 0.5 NA intron (NR_110158, intron 5 of 7) intron (NR_110158, intron 5 of 7) 49066 NR_110158 101928012 Hs.521131 NR_110158 ENSG00000223646 LOC101928012 - uncharacterized LOC101928012 ncRNA 192.75-14 chr12 1382057 1382754 + 0.5 NA intron (NR_027948, intron 16 of 19) MER102a|DNA|hAT-Charlie -118086 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 165-88 chr8 110125715 110126313 + 0.5 NA Intergenic AluSz|SINE|Alu -150243 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 164-68 chr5 156543367 156544004 + 0.5 NA intron (NM_001128209, intron 3 of 7) MIRb|SINE|MIR 216521 NM_001128209 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 161-68 chr5 7073080 7073559 + 0.5 NA Intergenic L4_A_Mam|LINE|RTE-X 196035 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 176.5-83 chr7 127143531 127144098 + 0.5 NA intron (NR_163850, intron 1 of 9) intron (NR_163850, intron 1 of 9) -71313 NR_110195 101928333 Hs.551332 NR_110194 ENSG00000236340 LOC101928333 - uncharacterized LOC101928333 ncRNA 202.75-30 chr3 168528819 168529250 + 0.5 NA intron (NR_021485, intron 4 of 15) L1MC1|LINE|L1 -22820 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 155.5-17 chr11 99648364 99648980 + 0.5 NA intron (NM_175566, intron 1 of 21) L1MA5A|LINE|L1 92527 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 152.75-29 chr14 29078326 29078811 + 0.5 NA Intergenic L2a|LINE|L2 -292781 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 149.5-82 chr6 131833656 131834162 + 0.5 NA intron (NM_006208, intron 1 of 24) intron (NM_006208, intron 1 of 24) 25889 NM_006208 5167 Hs.527295 NM_006208 ENSG00000197594 ENPP1 ARHR2|COLED|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 protein-coding 149.25-112 chr8 116362472 116363039 + 0.5 NA Intergenic Intergenic -37696 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 204.25-28 chr3 67325327 67326003 + 0.5 NA Intergenic MER47B|DNA|TcMar-Tigger 100201 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 194.25-43 chr7 96438755 96439483 + 0.5 NA Intergenic L1PA16|LINE|L1 64404 NR_163949 326.25-2 chr15 92865195 92866196 + 0.5 NA Intergenic Intergenic -17148 NR_037600 100507217 Hs.622504 NR_037600 LINC01578 - long intergenic non-protein coding RNA 1578 ncRNA 150.5-75 chr3 76516190 76516535 + 0.5 NA Intergenic Intergenic -523737 NM_002942 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 151.25-85 chr7 82194948 82195430 + 0.5 NA intron (NM_000722, intron 3 of 38) intron (NM_000722, intron 3 of 38) 186012 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 165.75-7 chr1 102902861 102903424 + 0.5 NA intron (NM_001854, intron 54 of 66) intron (NM_001854, intron 54 of 66) 205354 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 159-5 chr1 121498732 121499177 + 0.5 NA Intergenic Intergenic -20158 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 155.75-70 chr3 185183319 185183773 + 0.5 NA intron (NR_038990, intron 6 of 6) L1M5|LINE|L1 20645 NR_038990 339926 Hs.567848 NR_038990 ENSG00000223358 EHHADH-AS1 - EHHADH antisense RNA 1 ncRNA 171.75-60 chr4 152201412 152201957 + 0.5 NA Intergenic AluY|SINE|Alu 100866 NR_121627 100996286 Hs.322462 NR_121627 ENSG00000245954 LINC02273 - long intergenic non-protein coding RNA 2273 ncRNA 165-6 chr10 15277659 15278203 + 0.5 NA intron (NM_001010924, intron 2 of 7) AluSq|SINE|Alu 93358 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 211.25-18 chr19 52220983 52221640 + 0.5 NA promoter-TSS (NR_106859) promoter-TSS (NR_106859) -709 NR_106859 102466984 NR_106859 ENSG00000274380 MIR6801 hsa-mir-6801 microRNA 6801 ncRNA 149-90 chr6 45253646 45254071 + 0.5 NA intron (NM_001350325, intron 2 of 10) (AT)n|Simple_repeat|Simple_repeat -56088 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 154.75-99 chr8 79165191 79165536 + 0.5 NA Intergenic Intergenic -166825 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 168-33 chr2 36186929 36187448 + 0.5 NA Intergenic MIR|SINE|MIR 168382 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 176.75-20 chr13 45522165 45522753 + 0.5 NA intron (NM_031431, intron 19 of 22) intron (NM_031431, intron 19 of 22) 57520 NM_031431 83548 Hs.507948 NM_031431 ENSG00000136152 COG3 SEC34 component of oligomeric golgi complex 3 protein-coding 182.5-66 chr6 65504409 65504915 + 0.5 NA intron (NM_001292009, intron 2 of 43) L1MCa|LINE|L1 75142 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 234.75-5 chr1 214322262 214323034 + 0.5 NA intron (NM_020197, intron 5 of 11) intron (NM_020197, intron 5 of 11) 41489 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 197.25-2 chr1 79759370 79759883 + 0.5 NA Intergenic L1MA9|LINE|L1 -752896 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 178-59 chr6 76206567 76207175 + 0.5 NA Intergenic MIRb|SINE|MIR -134193 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 181.25-47 chr5 8745134 8745573 + 0.5 NA Intergenic L1PA3|LINE|L1 -94379 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 203.5-26 chr2 17489886 17490562 + 0.5 NA Intergenic L1PA7|LINE|L1 28216 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 176-52 chr4 136068986 136069500 + 0.5 NA Intergenic Intergenic -155563 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 210.25-26 chr3 4200341 4200960 + 0.5 NA Intergenic MLT2B3|LTR|ERVL -102654 NM_001320677 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 174.75-23 chr15 64695511 64695949 + 0.5 NA intron (NM_002537, intron 1 of 4) intron (NM_002537, intron 1 of 4) 7551 NM_002537 4947 Hs.744924 NM_002537 ENSG00000180304 OAZ2 AZ2 ornithine decarboxylase antizyme 2 protein-coding 161.75-94 chr8 127599931 127600310 + 0.5 NA Intergenic Intergenic -117981 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 174-29 chr2 84818727 84819231 + 0.5 NA intron (NM_001370, intron 76 of 76) AluSz|SINE|Alu 62105 NM_001307978 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 166-12 chr11 5261094 5261628 + 0.5 NA Intergenic L1PA7|LINE|L1 -6580 NM_000184 3048 Hs.302145 NM_000184 ENSG00000196565 HBG2 HBG-T1|TNCY hemoglobin subunit gamma 2 protein-coding 156.25-109 chrX 71891349 71891919 + 0.5 NA Intergenic L1MB4|LINE|L1 -19454 NM_001013627 340527 Hs.397836 NM_001013627 ENSG00000204131 NHSL2 - NHS like 2 protein-coding 160.75-104 chr8 117803725 117804175 + 0.5 NA intron (NM_000127, intron 10 of 10) intron (NM_000127, intron 10 of 10) 116963 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 159-35 chr2 86496932 86497404 + 0.5 NA Intergenic L1M4|LINE|L1 55707 NM_001146688 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 158-66 chr5 42674230 42674804 + 0.5 NA intron (NM_001242403, intron 3 of 9) L1MB7|LINE|L1 -82301 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 157.5-100 chr8 27814790 27815318 + 0.5 NA intron (NM_001278945, intron 6 of 7) intron (NM_001278945, intron 6 of 7) 22763 NM_001363040 55872 Hs.104741 NM_018492 ENSG00000168078 PBK CT84|HEL164|Nori-3|SPK|TOPK PDZ binding kinase protein-coding 250.75-19 chr2 227645987 227646804 + 0.5 NA Intergenic Intergenic -13075 NM_001162483 56918 Hs.283092 NM_020161 ENSG00000042304 C2orf83 - chromosome 2 open reading frame 83 protein-coding 182-5 chr1 246065610 246066095 + 0.5 NA intron (NM_022743, intron 5 of 11) L2c|LINE|L2 351560 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 159.5-20 chr14 69881881 69882399 + 0.5 NA intron (NM_001034852, intron 1 of 11) intron (NM_001034852, intron 1 of 11) 2724 NM_001034852 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 154-71 chr3 151005513 151005864 + 0.5 NA intron (NR_024066, intron 1 of 5) L2a|LINE|L2 -32689 NM_001195794 7401 Hs.745448 NM_052995 ENSG00000163646 CLRN1 RP61|USH3|USH3A clarin 1 protein-coding 199.75-30 chr2 60644633 60645251 + 0.5 NA Intergenic Intergenic -91288 NM_138559 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 164.25-17 chr10 27768490 27769059 + 0.5 NA TTS (NR_121652) TTS (NR_121652) -22955 NM_001242702 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 258-5 chr1 221862177 221862796 + 0.5 NA Intergenic Intergenic -21820 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 167.25-22 chr14 47501026 47501692 + 0.5 NA intron (NM_001113498, intron 1 of 16) L1MC5a|LINE|L1 -158113 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 168.5-97 chr8 83117936 83118503 + 0.5 NA Intergenic Intergenic 206115 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 179.25-60 chr5 33425656 33426117 + 0.5 NA Intergenic L1PA15|LINE|L1 -14810 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 288.5-4 chr2 26127870 26128716 + 0.5 NA intron (NM_016131, intron 5 of 5) MER1B|DNA|hAT-Charlie -44795 NM_001168241 150946 Hs.187912 NM_001168241 ENSG00000157833 GAREM2 FAM59B|GAREML GRB2 associated regulator of MAPK1 subtype 2 protein-coding 177-3 chr1 105734675 105735105 + 0.5 NA Intergenic Intergenic -115955 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 178.75-68 chr8 99505945 99506469 + 0.5 NA intron (NM_017890, intron 27 of 61) intron (NM_017890, intron 27 of 61) 30523 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 184.5-36 chr17 58416872 58417535 + 0.5 NA 5' UTR (NM_017763, exon 1 of 10) 5' UTR (NM_017763, exon 1 of 10) 331 NM_001305544 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 165.5-88 chr7 26783886 26784385 + 0.5 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 73588 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 209-36 chr4 104756773 104757498 + 0.5 NA Intergenic L2b|LINE|L2 -262241 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 145.75-25 chr12 99988156 99988537 + 0.5 NA Intergenic Intergenic -3692 NM_001352186 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 148.25-23 chr12 96590119 96590602 + 0.5 NA intron (NM_001306084, intron 23 of 67) intron (NM_001306084, intron 23 of 67) 100783 NM_001367885 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 193.25-3 chr1 81773161 81773777 + 0.5 NA intron (NM_001366008, intron 4 of 26) L4_C_Mam|LINE|RTE-X -26907 NM_001366005 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 183.5-39 chr21 18831354 18831902 + 0.5 NA Intergenic Intergenic -71816 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 168.5-68 chr3 123181228 123181808 + 0.5 NA Intergenic Intergenic 19724 NR_106960 102465667 NR_106960 ENSG00000284421 MIR7110 hsa-mir-7110 microRNA 7110 ncRNA 159.75-59 chr3 70403445 70403817 + 0.5 NA Intergenic MER58A|DNA|hAT-Charlie -90993 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 163.5-77 chr3 150529628 150530117 + 0.5 NA Intergenic L1MEd|LINE|L1 16624 NM_014445 27230 Hs.518326 NM_014445 ENSG00000120742 SERP1 RAMP4 stress associated endoplasmic reticulum protein 1 protein-coding 174-73 chrX 71102327 71102902 + 0.5 NA 3' UTR (NM_005938, exon 3 of 3) 3' UTR (NM_005938, exon 3 of 3) 4126 NR_033212 158830 Hs.443936 NM_001025265 ENSG00000204165 CXorf65 - chromosome X open reading frame 65 protein-coding 147.75-68 chr3 50993905 50994318 + 0.5 NA intron (NM_004947, intron 5 of 52) intron (NM_004947, intron 5 of 52) 319031 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 184.5-37 chr17 71413886 71414555 + 0.5 NA Intergenic AluJb|SINE|Alu -212041 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 204.5-43 chr8 76177514 76178000 + 0.5 NA Intergenic L1MA5A|LINE|L1 -228897 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 153.5-93 chr6 161830287 161830819 + 0.5 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 359576 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 151-27 chr16 74648100 74648514 + 0.5 NA intron (NM_001370537, intron 4 of 13) MIRb|SINE|MIR 18570 NM_001370543 55159 Hs.567525 NM_018124 ENSG00000168411 RFWD3 FANCW|RNF201 ring finger and WD repeat domain 3 protein-coding 171.75-74 chr7 17284136 17284613 + 0.5 NA Intergenic L1MB7|LINE|L1 -14278 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 156.5-82 chr5 40209315 40209873 + 0.5 NA Intergenic Intergenic 157303 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 220.5-35 chr7 34476494 34477248 + 0.5 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -181347 NM_207172 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 147-113 chr8 82979964 82980481 + 0.5 NA Intergenic Intergenic 68118 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 147-85 chr5 32422410 32422902 + 0.5 NA intron (NM_016107, intron 2 of 19) AluJr|SINE|Alu 22084 NM_016107 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 271-6 chr2 200846745 200847790 + 0.5 NA Intergenic AluSx1|SINE|Alu 17294 NM_001162407 1195 Hs.433732 NM_004071 ENSG00000013441 CLK1 CLK|CLK/STY|STY CDC like kinase 1 protein-coding 196.25-15 chr14 44622701 44623205 + 0.5 NA Intergenic Intergenic 115544 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 268.75-16 chr8 86615019 86615844 + 0.5 NA intron (NM_019098, intron 13 of 17) AluSz6|SINE|Alu 100996 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 146.5-17 chr11 97824794 97825165 + 0.5 NA Intergenic AluY|SINE|Alu -1195970 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 165.5-42 chr18 71176535 71177003 + 0.5 NA Intergenic LOR1a|LTR|ERV1 402187 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 178-32 chr19 55088614 55089171 + 0.5 NA TTS (NM_133180).6 TTS (NM_133180).6 8500 NM_017729 54869 Hs.438862 NM_017729 ENSG00000131037 EPS8L1 DRC3|EPS8R1|PP10566 EPS8 like 1 protein-coding 166-46 chr22 25172065 25172640 + 0.5 NA intron (NM_001145206, intron 5 of 10) intron (NM_001145206, intron 5 of 10) -27506 NM_004076 1417 Hs.533022 NM_004076 ENSG00000100053 CRYBB3 CATCN2|CRYB3|CTRCT22 crystallin beta B3 protein-coding 215.25-26 chr3 18968230 18968893 + 0.5 NA Intergenic Intergenic -179949 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 154-10 chr1 184107999 184108478 + 0.5 NA Intergenic Intergenic 56508 NM_052965 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 193.75-46 chr4 64943347 64943830 + 0.5 NA intron (NR_033976, intron 2 of 6) BLACKJACK|DNA|hAT-Blackjack 60912 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 210.25-38 chr7 143131812 143132285 + 0.5 NA promoter-TSS (NM_002652) promoter-TSS (NM_002652) -29 NM_002652 5304 Hs.99949 NM_002652 ENSG00000159763 PIP GCDFP-15|GCDFP15|GPIP4 prolactin induced protein protein-coding 148.75-81 chr5 128900346 128900799 + 0.5 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -64555 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 148-81 chr6 67972827 67973355 + 0.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR -82260 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 186-19 chr18 69012184 69012768 + 0.5 NA intron (NM_001093729, intron 9 of 9) intron (NM_001093729, intron 9 of 9) 214396 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 156-100 chr9 115151722 115152167 + 0.5 NA intron (NR_163556, intron 1 of 7) intron (NR_163556, intron 1 of 7) 10126 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 161.5-7 chr1 177434791 177435405 + 0.5 NA Intergenic Intergenic 83512 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 157-2 chr1 42882361 42882906 + 0.5 NA intron (NR_104171, intron 3 of 3) L1MEd|LINE|L1 25011 NR_104171 339539 Hs.434301 NR_104171 LOC339539 - uncharacterized LOC339539 ncRNA 157.25-65 chr4 39780837 39781171 + 0.5 NA 3' UTR (NM_001111113, exon 5 of 5) 3' UTR (NM_001111113, exon 5 of 5) 82868 NM_001111112 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 148.25-37 chr16 76030872 76031255 + 0.5 NA Intergenic Intergenic -246338 NM_001322181 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 166-17 chr11 87063136 87063674 + 0.5 NA intron (NR_033149, intron 1 of 13) L1ME4a|LINE|L1 25471 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 181 chr1 9018421 9019016 + 0.5 NA intron (NM_207420, intron 4 of 11) intron (NM_207420, intron 4 of 11) 7627 NM_207420 155184 Hs.531239 NM_207420 ENSG00000197241 SLC2A7 GLUT-7|GLUT7 solute carrier family 2 member 7 protein-coding 150.75-31 chr18 22711703 22712225 + 0.5 NA Intergenic MIR|SINE|MIR 74873 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 218.25-41 chr7 29479995 29480490 + 0.5 NA exon (NM_001039936, exon 1 of 7) exon (NM_001039936, exon 1 of 7) 530 NR_120524 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 176.75-87 chr7 103669767 103670321 + 0.5 NA intron (NM_005045, intron 11 of 64) intron (NM_005045, intron 11 of 64) -223837 NR_135802 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 231.25-28 chr4 76315691 76316296 + 0.5 NA intron (NM_001042784, intron 23 of 23) L1PB1|LINE|L1 9967 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 150.75-63 chr4 46790723 46791123 + 0.5 NA intron (NM_130902, intron 2 of 2) intron (NM_130902, intron 2 of 2) 118322 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 158.25-14 chr10 65959700 65960199 + 0.5 NA intron (NM_001127384, intron 17 of 17) intron (NM_001127384, intron 17 of 17) 388524 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 155-6 chr1 179970134 179970553 + 0.5 NA intron (NM_014810, intron 1 of 37) intron (NM_014810, intron 1 of 37) 15533 NM_014810 9857 Hs.413045 NM_014810 ENSG00000135837 CEP350 CAP350|GM133 centrosomal protein 350 protein-coding 165.75-12 chr1 195876105 195876764 + 0.5 NA Intergenic Charlie1a|DNA|hAT-Charlie 212281 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 182.25-69 chrX 78450917 78451373 + 0.5 NA Intergenic L1MB7|LINE|L1 -123454 NM_001282186 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 168-57 chr5 20596996 20597421 + 0.5 NA Intergenic Intergenic -14632 NR_149120 105374676 Hs.561423 NR_149120 ENSG00000251629 LINC02241 - long intergenic non-protein coding RNA 2241 ncRNA 155-74 chr4 105566244 105566745 + 0.5 NA intron (NR_046840, intron 2 of 2) L1MA2|LINE|L1 4903 NR_046840 100874374 Hs.668908 NR_046840 ENSG00000249885 ARHGEF38-IT1 - ARHGEF38 intronic transcript 1 ncRNA 225-16 chr5 2107277 2108089 + 0.5 NA Intergenic Intergenic 204518 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 176.5-34 chr2 32439790 32440359 + 0.5 NA intron (NM_016252, intron 16 of 73) AluSx|SINE|Alu 83046 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 152.5-30 chr14 76161606 76162153 + 0.5 NA intron (NM_001322028, intron 2 of 9) AluSx|SINE|Alu 7525 NM_017972 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 246-9 chr4 105036220 105036990 + 0.5 NA Intergenic L1MA3|LINE|L1 -109270 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 296.5-2 chr1 112447221 112448027 + 0.5 NA intron (NM_018704, intron 3 of 5) intron (NM_018704, intron 3 of 5) 14209 NR_036210 100422976 NR_036210 ENSG00000283296 MIR4256 - microRNA 4256 ncRNA 209.25-41 chr7 29994035 29994499 + 0.5 NA Intergenic L1MEc|LINE|L1 -3978 NM_001145514 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 165-75 chr6 64874436 64875079 + 0.5 NA intron (NM_001292009, intron 19 of 43) LTR16E1|LTR|ERVL -426661 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 147.5-88 chr6 74439651 74440167 + 0.5 NA intron (NR_110856, intron 2 of 3) intron (NR_110856, intron 2 of 3) 370458 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 147.5-21 chr12 88196170 88196643 + 0.5 NA non-coding (NR_159381, exon 15 of 15) non-coding (NR_159381, exon 15 of 15) 54099 NM_001366579 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 166-67 chr7 33527658 33528094 + 0.5 NA intron (NM_198428, intron 20 of 22) intron (NM_198428, intron 20 of 22) -377039 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 152.75-67 chr4 78399327 78399799 + 0.5 NA intron (NM_001166133, intron 29 of 41) intron (NM_001166133, intron 29 of 41) 110578 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 185.5-46 chr3 95930761 95931256 + 0.5 NA Intergenic Intergenic -247815 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 151-80 chr6 37535908 37536298 + 0.5 NA non-coding (NR_126057, exon 4 of 4) non-coding (NR_126057, exon 4 of 4) 19319 NR_039669 100616413 NR_039669 ENSG00000263926 MIR4462 - microRNA 4462 ncRNA 180-5 chr1 172812243 172812755 + 0.5 NA Intergenic MER65A|LTR|ERV1 153396 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 189.25-19 chr17 58976146 58976899 + 0.5 NA intron (NM_014906, intron 6 of 6) intron (NM_014906, intron 6 of 6) 130358 NM_001353085 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 154-80 chr5 19119289 19119845 + 0.5 NA Intergenic L1PA13|LINE|L1 766705 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 150.25-103 chr8 93490574 93491079 + 0.5 NA intron (NR_033858, intron 7 of 10) MER58B|DNA|hAT-Charlie 209607 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 162.5-53 chr3 15029598 15030199 + 0.5 NA intron (NM_003298, intron 9 of 14) A-rich|Low_complexity|Low_complexity 35417 NR_135247 64432 Hs.657764 NM_022497 ENSG00000131368 MRPS25 MRP-S25|RPMS25 mitochondrial ribosomal protein S25 protein-coding 159.75-35 chr14 80276742 80277197 + 0.5 NA intron (NR_038355, intron 2 of 8) intron (NR_038355, intron 2 of 8) -45912 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 147.25-28 chr12 115747938 115748305 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR 400533 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 157.75-68 chr3 116508146 116508605 + 0.5 NA Intergenic Intergenic -44098 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 196.75-17 chr14 67527927 67528375 + 0.5 NA intron (NM_001348546, intron 1 of 2) intron (NM_001348546, intron 1 of 2) -5139 NM_020715 57475 Hs.594236 NM_020715 ENSG00000054690 PLEKHH1 - pleckstrin homology, MyTH4 and FERM domain containing H1 protein-coding 151.5-49 chr2 53244593 53244987 + 0.5 NA Intergenic Intergenic -522993 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 170-9 chr10 85513131 85513547 + 0.5 NA Intergenic Intergenic 63747 NR_120671 101929684 Hs.554059 NR_120671 ENSG00000230962 LINC01520 - long intergenic non-protein coding RNA 1520 ncRNA 169.75-34 chr15 23527103 23527592 + 0.5 NA Intergenic HERV35I-int|LTR|ERV1 34784 NR_039731 100616275 NR_039731 ENSG00000265673 MIR4508 mir-4508 microRNA 4508 ncRNA 167.25-39 chr2 180664627 180665231 + 0.5 NA Intergenic L1PA16|LINE|L1 -27175 NR_104324 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 157.25-87 chr6 149715846 149716316 + 0.5 NA intron (NM_001350340, intron 1 of 8) intron (NM_001350340, intron 1 of 8) 344 NR_073033 9113 Hs.549084 NM_004690 ENSG00000131023 LATS1 WARTS|wts large tumor suppressor kinase 1 protein-coding 149.25-86 chr5 79596579 79597095 + 0.5 NA Intergenic Intergenic -15580 NM_001114394 167153 Hs.418198 NM_173797 ENSG00000164329 TENT2 APD4|GLD2|PAPD4|TUT2 terminal nucleotidyltransferase 2 protein-coding 202.25-51 chr6 168616312 168617060 + 0.5 NA intron (NM_001166412, intron 9 of 12) intron (NM_001166412, intron 9 of 12) 175502 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 152.5-2 chr1 97485996 97486511 + 0.5 NA intron (NM_000110, intron 13 of 22) Tigger12A|DNA|TcMar-Tigger -310668 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 158.25-110 chr8 85943317 85943834 + 0.5 NA Intergenic Intergenic -115633 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 157-90 chr8 27698499 27698986 + 0.5 NA Intergenic L1ME2|LINE|L1 -2935 NR_037417 100500858 NR_037417 ENSG00000284351 MIR3622A mir-3622a microRNA 3622a ncRNA 185-24 chr15 60500381 60500854 + 0.5 NA intron (NM_134260, intron 10 of 11) X7B_LINE|LINE|CR1 21439 NR_120342 101928784 Hs.655155 NR_120339 ENSG00000245534 RORA-AS1 - RORA antisense RNA 1 ncRNA 173-8 chr1 170320181 170320688 + 0.5 NA Intergenic Intergenic -36226 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 159.25-12 chr12 10407809 10408341 + 0.5 NA intron (NM_001199805, intron 3 of 12) intron (NM_001199805, intron 3 of 12) 1682 NM_013431 8302 Hs.721094 NM_013431 ENSG00000183542 KLRC4 NKG2-F|NKG2F killer cell lectin like receptor C4 protein-coding 172.25-62 chr6 54655516 54655982 + 0.5 NA Intergenic Intergenic -191022 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 192.25-16 chr13 31501585 31502123 + 0.5 NA Intergenic L1M4|LINE|L1 -237672 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 155.75-44 chr17 53613314 53613857 + 0.5 NA Intergenic Intergenic -209342 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 152-45 chr20 18873872 18874227 + 0.5 NA Intergenic L1PB1|LINE|L1 -43846 NR_161342 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 176.75-56 chr3 81356716 81357223 + 0.5 NA Intergenic MLT2B1|LTR|ERVL 363101 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 157-71 chr4 139137630 139138074 + 0.5 NA 5' UTR (NM_001371324, exon 4 of 11) 5' UTR (NM_001371324, exon 4 of 11) 39366 NM_001371324 165.5-36 chr15 50080129 50080640 + 0.5 NA intron (NR_073597, intron 2 of 26) L4_A_Mam|LINE|RTE-X 32995 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 163.5-91 chr5 64817612 64818174 + 0.5 NA intron (NM_005869, intron 10 of 13) intron (NM_005869, intron 10 of 13) 48963 NM_005869 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 185-63 chr6 34703998 34704617 + 0.5 NA Intergenic AluSc5|SINE|Alu 7362 NR_134626 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 156.25-48 chr20 52758609 52759204 + 0.5 NA Intergenic Intergenic 138068 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 174.75-21 chr12 103018396 103018889 + 0.5 NA Intergenic MSTB1-int|LTR|ERVL-MaLR -60201 NM_001354304 5053 Hs.560019 NM_000277 ENSG00000171759 PAH PH|PKU|PKU1 phenylalanine hydroxylase protein-coding 158.25-107 chr7 118759184 118759790 + 0.5 NA Intergenic Intergenic 534783 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 173.75-78 chrY 11328292 11328775 + 0.5 NA Intergenic BSR/Beta|Satellite|Satellite 1093057 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 184.75-57 chr4 91508507 91509222 + 0.5 NA intron (NM_001145065, intron 10 of 10) L1MB7|LINE|L1 768438 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 192.75-9 chr10 89002954 89003463 + 0.5 NA intron (NR_028034, intron 2 of 5) intron (NR_028034, intron 2 of 5) -10233 NR_028371 100302740 Hs.244139 NR_028371 FAS-AS1 FAS-AS|FASAS|SAF FAS antisense RNA 1 ncRNA 185.25-39 chr2 34354888 34355545 + 0.5 NA Intergenic Intergenic 287990 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 183.75-57 chr3 35088183 35088825 + 0.5 NA intron (NR_110817, intron 2 of 3) L1PB1|LINE|L1 305519 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 155.5-34 chr14 71734086 71734604 + 0.5 NA intron (NM_001354286, intron 22 of 24) intron (NM_001354286, intron 22 of 24) 148047 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 206.5-28 chr3 126602576 126603321 + 0.5 NA Intergenic L1MEc|LINE|L1 -44016 NR_130715 152065 Hs.178210 NM_152533 ENSG00000180697 C3orf22 - chromosome 3 open reading frame 22 protein-coding 147.75-93 chr6 65165526 65165906 + 0.5 NA intron (NM_001292009, intron 12 of 43) L1MB7|LINE|L1 -135702 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 146.25-63 chr3 116047605 116047988 + 0.5 NA intron (NM_001318915, intron 2 of 8) L1MA8|LINE|L1 -142670 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 208.75-22 chr3 113549969 113550667 + 0.5 NA intron (NM_001322297, intron 1 of 24) intron (NM_001322297, intron 1 of 24) 17763 NR_136284 54847 Hs.591291 NM_017699 ENSG00000072858 SIDT1 SID-1|SID1 SID1 transmembrane family member 1 protein-coding 267.75-14 chr5 57150703 57151457 + 0.5 NA Intergenic L1M1|LINE|L1 -22868 NM_001331037 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 194-29 chr22 39536091 39536527 + 0.5 NA Intergenic MIR|SINE|MIR -3561 NM_194326 91582 Hs.526933 NM_194326 ENSG00000187051 RPS19BP1 AROS|S19BP ribosomal protein S19 binding protein 1 protein-coding 223.25-21 chr3 88316029 88316751 + 0.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR -22066 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 173.25-3 chr1 212820307 212820823 + 0.5 NA Intergenic AluSz|SINE|Alu 27084 NM_001024601 149643 Hs.153274 NM_001024601 ENSG00000185523 SPATA45 C1orf227 spermatogenesis associated 45 protein-coding 220.75-34 chr5 137771490 137772051 + 0.5 NA Intergenic Intergenic -17407 NM_006805 10949 Hs.96996 NM_006805 ENSG00000177733 HNRNPA0 HNRPA0 heterogeneous nuclear ribonucleoprotein A0 protein-coding 199.75-23 chr17 80813955 80814529 + 0.5 NA intron (NM_020761, intron 7 of 33) intron (NM_020761, intron 7 of 33) -8610 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 185-50 chr3 182408754 182409468 + 0.5 NA Intergenic L1MC2|LINE|L1 77251 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 169.5-92 chr8 80365388 80365933 + 0.5 NA Intergenic Intergenic -119933 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 205-33 chr3 129025928 129026456 + 0.5 NA intron (NM_024768, intron 2 of 7) intron (NM_024768, intron 2 of 7) -22190 NM_001348521 57501 Hs.518247 NM_020741 ENSG00000114656 KIAA1257 - KIAA1257 protein-coding 159.75-44 chr2 12019174 12019708 + 0.5 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) 12325 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 154-74 chr4 68022556 68023014 + 0.5 NA Intergenic L2|LINE|L2 -25346 NR_033737 644759 Hs.646883 NR_033737 ENSG00000229009 TMPRSS11GP - transmembrane serine protease 11G, pseudogene pseudo 155-77 chr4 163977523 163978037 + 0.5 NA intron (NM_001166373, intron 2 of 7) intron (NM_001166373, intron 2 of 7) 219931 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 170.5-24 chr15 32980190 32980634 + 0.5 NA intron (NM_001277313, intron 7 of 20) intron (NM_001277313, intron 7 of 20) 87762 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 164.5-71 chr5 94167457 94167996 + 0.5 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -56027 NM_001163417 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 228.25-24 chr4 154752691 154753249 + 0.5 NA 3' UTR (NM_004744, exon 3 of 3) 3' UTR (NM_004744, exon 3 of 3) 8970 NM_004744 9227 Hs.658427 NM_004744 ENSG00000121207 LRAT LCA14 lecithin retinol acyltransferase protein-coding 152.5-85 chr5 21016227 21016608 + 0.5 NA Intergenic MER66B|LTR|ERV1 -400882 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 148.25-18 chr11 77079165 77079599 + 0.5 NA intron (NM_004055, intron 1 of 12) L1ME3A|LINE|L1 12411 NM_004055 726 Hs.248153 NM_004055 ENSG00000149260 CAPN5 ADNIV|HTRA3|VRNI|nCL-3 calpain 5 protein-coding 201.5-21 chr17 65661956 65662681 + 0.5 NA intron (NM_001353129, intron 24 of 26) intron (NM_001353129, intron 24 of 26) -100670 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 177-13 chr12 3326093 3326522 + 0.5 NA intron (NR_148995, intron 1 of 11) intron (NR_148995, intron 1 of 11) 39815 NR_148995 100128253 Hs.447497 NR_148995 LOC100128253 - uncharacterized LOC100128253 ncRNA 160.75-3 chr1 67046078 67046538 + 0.5 NA intron (NM_015139, intron 7 of 11) intron (NM_015139, intron 7 of 11) 7840 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 147.25-55 chr3 7880767 7881104 + 0.5 NA Intergenic L1PA15|LINE|L1 135372 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 154.5-77 chr5 38946294 38946654 + 0.5 NA exon (NM_152756, exon 33 of 38) exon (NM_152756, exon 33 of 38) 100462 NM_001323506 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 153.25-99 chr5 166847531 166848113 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 78548 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 203.25-32 chr5 4879537 4880033 + 0.5 NA Intergenic Intergenic 106304 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 170.25-57 chr5 27726077 27726570 + 0.5 NA Intergenic Intergenic 254031 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 172.25 chr1 51159014 51159493 + 0.5 NA Intergenic L1MA4|LINE|L1 57025 NM_001136508 284546 Hs.176177 NM_001136508 ENSG00000204006 C1orf185 - chromosome 1 open reading frame 185 protein-coding 147.25-31 chr13 107853093 107853473 + 0.5 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 14213 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155 member A protein-coding 189-60 chr8 116249283 116249860 + 0.5 NA intron (NR_046215, intron 4 of 13) intron (NR_046215, intron 4 of 13) 75488 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 165.25-59 chr6 22144537 22144944 + 0.5 NA intron (NR_034143, intron 2 of 2) intron (NR_034143, intron 2 of 2) 2453 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 155.25-76 chr6 51351098 51351549 + 0.5 NA Intergenic AluSz|SINE|Alu -270547 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 157.5-2 chr1 71709766 71710246 + 0.5 NA intron (NM_173808, intron 3 of 6) L1MA1|LINE|L1 127006 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 164.75-14 chr10 128759721 128760349 + 0.5 NA Intergenic Intergenic -152798 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 147-43 chr2 47014903 47015463 + 0.5 NA intron (NM_001288951, intron 11 of 20) intron (NM_001288951, intron 11 of 20) -73328 NM_001171508 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 180.5-11 chr12 6060991 6061683 + 0.5 NA intron (NM_000552, intron 13 of 51) MIR3|SINE|MIR -21154 NR_145989 109729112 NR_145989 SNORA120 - small nucleolar RNA, H/ACA box 120 snoRNA 164-35 chr2 73132626 73133241 + 0.5 NA Intergenic AluJo|SINE|Alu -19985 NM_001371272 198.5-61 chrX 91475910 91476418 + 0.5 NA Intergenic Intergenic -41165 NR_110659 102724167 Hs.571694 NR_110659 ENSG00000234161 PABPC5-AS1 CXorf46 PABPC5 antisense RNA 1 ncRNA 149.25-93 chr6 135368391 135368918 + 0.5 NA intron (NM_017651, intron 22 of 27) L1PB1|LINE|L1 129086 NM_001134831 54806 Hs.386684 NM_017651 ENSG00000135541 AHI1 AHI-1|JBTS3|ORF1|dJ71N10.1 Abelson helper integration site 1 protein-coding 207-8 chr12 13241367 13242132 + 0.5 NA Intergenic Intergenic 45023 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 161.25-67 chr8 37708978 37709307 + 0.5 NA Intergenic Intergenic -8437 NR_125820 101929622 Hs.127775 NR_125820 LOC101929622 - uncharacterized LOC101929622 ncRNA 165.75-21 chr10 115708683 115709139 + 0.5 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 485878 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 176.75-4 chr1 145964628 145965330 + 0.5 NA promoter-TSS (NM_001039888) promoter-TSS (NM_001039888) 289 NM_032305 84265 Hs.591456 NM_032305 ENSG00000121851 POLR3GL RPC32HOM|flj32422 RNA polymerase III subunit G like protein-coding 162.5-66 chr4 134945758 134946246 + 0.5 NA Intergenic L1MC1|LINE|L1 177557 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 171.75-85 chr8 58387516 58388021 + 0.5 NA Intergenic Intergenic -23496 NM_001330535 137886 Hs.155572 NM_001077619 ENSG00000215114 UBXN2B p37 UBX domain protein 2B protein-coding 191-4 chr1 194964547 194965179 + 0.5 NA Intergenic L1MA7|LINE|L1 1123852 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 161-39 chr18 21483241 21483757 + 0.5 NA intron (NM_001142966, intron 17 of 32) intron (NM_001142966, intron 17 of 32) 117205 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 225.75-33 chr9 28282424 28283206 + 0.5 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 436490 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 146-81 chr6 140940275 140940682 + 0.5 NA Intergenic Intergenic 256664 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 150-90 chr8 121087275 121087693 + 0.5 NA Intergenic Intergenic -275438 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 158.5-80 chr4 169086212 169086622 + 0.5 NA Intergenic AluSc|SINE|Alu -76162 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 193.25-58 chr7 158485768 158486341 + 0.5 NA intron (NM_130842, intron 1 of 21) L1ME4a|LINE|L1 46759 NR_030325 693180 NR_030325 ENSG00000207637 MIR595 MIRN595|hsa-mir-595 microRNA 595 ncRNA 185.5-28 chr14 66612806 66613319 + 0.5 NA intron (NM_001024218, intron 1 of 21) Tigger17a|DNA|TcMar-Tigger 105655 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 158-86 chr7 38383730 38384156 + 0.5 NA 3' UTR (NM_139316, exon 20 of 20) 3' UTR (NM_139316, exon 20 of 20) 42366 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 152-10 chr10 90006638 90007059 + 0.5 NA Intergenic Intergenic -49475 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 201.5-4 chr10 53284955 53285419 + 0.5 NA Intergenic L2a|LINE|L2 -513487 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 265.25 chr1 72105653 72106467 + 0.5 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) 176479 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 155.25-60 chr3 190349217 190349573 + 0.5 NA Intergenic MSTA|LTR|ERVL-MaLR -26949 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 155.75-20 chr11 58571631 58572147 + 0.5 NA intron (NM_001143995, intron 1 of 8) MIR|SINE|MIR 4028 NM_004811 9404 Hs.125474 NM_004811 ENSG00000110031 LPXN LDPL leupaxin protein-coding 178.75-61 chr7 13484474 13485021 + 0.5 NA Intergenic Intergenic 501767 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 172.25-65 chr7 5398199 5398746 + 0.5 NA intron (NM_001080495, intron 2 of 29) AluJr|SINE|Alu 25074 NM_001080495 84629 Hs.520638 NM_001013722 ENSG00000182095 TNRC18 CAGL79|TNRC18A trinucleotide repeat containing 18 protein-coding 189-30 chr2 76965312 76965912 + 0.5 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -20353 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 307.75-7 chr6 140954651 140955502 + 0.5 NA Intergenic Intergenic 271262 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 211.75-23 chr4 32390521 32391165 + 0.5 NA Intergenic Intergenic 39805 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 214.5-32 chr3 142843313 142843851 + 0.5 NA intron (NM_013363, intron 3 of 8) HAL1b|LINE|L1 45501 NM_013363 26577 Hs.8944 NM_013363 ENSG00000163710 PCOLCE2 PCPE2 procollagen C-endopeptidase enhancer 2 protein-coding 180-8 chr10 106171809 106172227 + 0.5 NA intron (NR_134330, intron 1 of 4) MIRb|SINE|MIR 31853 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 176.75-68 chr5 26410451 26411099 + 0.5 NA Intergenic THE1C-int|LTR|ERVL-MaLR 627811 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 193-17 chr12 111870850 111871329 + 0.5 NA exon (NM_139078, exon 7 of 14) exon (NM_139078, exon 7 of 14) -27974 NR_036636 8759 Hs.661708 NR_036636 ADAM1A ADAM1|ADAM1P|FTNAP|Ftna|PH-30a ADAM metallopeptidase domain 1A (pseudogene) pseudo 192.25-22 chr14 72382601 72383132 + 0.5 NA intron (NM_001370288, intron 3 of 16) L1ME3D|LINE|L1 -133954 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 229.75 chr1 174286033 174286740 + 0.5 NA intron (NM_001366445, intron 10 of 13) L1MA9|LINE|L1 11286 NM_001366449 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 168.75-2 chr1 98004741 98005345 + 0.5 NA intron (NR_046105, intron 3 of 4) intron (NR_046105, intron 3 of 4) 40308 NR_039604 100616452 NR_039604 ENSG00000284247 MIR2682 mir-2682 microRNA 2682 ncRNA 178.25-13 chr12 124508556 124509098 + 0.5 NA intron (NM_001077261, intron 2 of 47) intron (NM_001077261, intron 2 of 47) 58785 NM_001206654 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 154.25-38 chr17 60437464 60437917 + 0.5 NA Intergenic AluYm1|SINE|Alu 15201 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 178.75-11 chr12 7449916 7450584 + 0.5 NA Intergenic Intergenic -6065 NM_174941 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 148-44 chr2 14065817 14066275 + 0.5 NA Intergenic Intergenic 334912 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 160-7 chr10 43011114 43011625 + 0.5 NA Intergenic Intergenic 13806 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 235.75-6 chr11 39261091 39261911 + 0.5 NA Intergenic L1MA9|LINE|L1 612643 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 150.25-50 chr2 76214927 76215374 + 0.5 NA Intergenic Intergenic -504235 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 196-47 chr7 109344027 109344419 + 0.5 NA Intergenic Intergenic -459636 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 154.25-55 chr3 132167806 132168337 + 0.5 NA Intergenic Intergenic -128465 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 149.75-74 chr5 74746444 74746883 + 0.5 NA intron (NR_104006, intron 8 of 19) intron (NR_104006, intron 8 of 19) 20454 NM_032380 84340 Hs.277154 NM_032380 ENSG00000164347 GFM2 EF-G2mt|EFG2|MRRF2|MST027|MSTP027|RRF|RRF2|RRF2mt|hEFG2|mEF-G 2 G elongation factor mitochondrial 2 protein-coding 163.25-57 chr4 180146092 180146721 + 0.5 NA Intergenic Intergenic 1012743 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 175.5-49 chr2 139709901 139710572 + 0.5 NA Intergenic MER3|DNA|hAT-Charlie 812912 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 157.75-58 chr2 202429979 202430305 + 0.5 NA intron (NM_001204, intron 1 of 12) MLT1A|LTR|ERVL-MaLR 53815 NM_001204 659 Hs.471119 NM_001204 ENSG00000204217 BMPR2 BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK bone morphogenetic protein receptor type 2 protein-coding 156.75-70 chr4 143569113 143569582 + 0.5 NA Intergenic AluJr4|SINE|Alu 9875 NR_003675 441046 Hs.135705 NM_001011539 ENSG00000236296 GUSBP5 GYPELOC441046 GUSB pseudogene 5 pseudo 156.25-97 chr8 119405399 119405808 + 0.5 NA Intergenic L1PA16|LINE|L1 -10843 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 168.5-12 chr10 58938289 58938796 + 0.5 NA Intergenic Intergenic -60976 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 170.25-26 chr17 51835831 51836370 + 0.5 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 322614 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 152.5-68 chr3 30016130 30016600 + 0.5 NA Intergenic Intergenic -82209 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 153-54 chr3 101454974 101455483 + 0.5 NA intron (NM_020654, intron 4 of 23) intron (NM_020654, intron 4 of 23) 57984 NM_001282803 57337 Hs.529551 NM_020654 ENSG00000138468 SENP7 - SUMO specific peptidase 7 protein-coding 189.75-34 chr18 55778097 55778758 + 0.5 NA non-coding (NR_145453, exon 2 of 2) non-coding (NR_145453, exon 2 of 2) 1994 NR_145453 100132501 Hs.634003 NR_145452 LINC01415 TCONS_00026208 long intergenic non-protein coding RNA 1415 ncRNA 171.75-20 chr12 48229863 48230360 + 0.5 NA Intergenic L1PB1|LINE|L1 -26819 NM_001004134 121275 Hs.446790 NM_001004134 ENSG00000172640 OR10AD1 OR10AD1P|OR12-1 olfactory receptor family 10 subfamily AD member 1 protein-coding 170.5-72 chr7 105840975 105841457 + 0.5 NA intron (NM_152749, intron 2 of 3) MIR|SINE|MIR 35369 NM_020725 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 203.75-13 chr2 186743312 186743939 + 0.5 NA intron (NM_177454, intron 3 of 7) intron (NM_177454, intron 3 of 7) 49565 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 165.75-70 chr4 44776955 44777486 + 0.5 NA Intergenic MER50-int|LTR|ERV1 -50586 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 194.25-38 chr5 96761199 96761663 + 0.5 NA 3' UTR (NM_001349244, exon 20 of 20) 3' UTR (NM_001349244, exon 20 of 20) 17829 NR_104285 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 152.75-50 chr2 120428893 120429469 + 0.5 NA Intergenic Intergenic 37168 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 160.5-65 chr3 135520979 135521513 + 0.5 NA Intergenic L1MC5|LINE|L1 -444482 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 151-71 chr4 140221395 140221784 + 0.5 NA Intergenic L1ME3E|LINE|L1 -35719 NM_032547 60592 Hs.480815 NM_032547 ENSG00000153130 SCOC HRIHFB2072|SCOCO|UNC-69 short coiled-coil protein protein-coding 146.75-31 chr14 65939403 65939755 + 0.5 NA Intergenic Intergenic 468477 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 165.75-14 chr1 241267726 241268333 + 0.5 NA intron (NM_001282778, intron 2 of 16) HAL1|LINE|L1 87797 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 148.75-13 chr10 66670129 66670529 + 0.5 NA intron (NM_001127384, intron 9 of 17) MLT1E2|LTR|ERVL-MaLR -255707 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 147.75-119 chrX 133421929 133422249 + 0.5 NA Intergenic MIRc|SINE|MIR -6600 NM_001448 2239 Hs.58367 NM_001448 ENSG00000076716 GPC4 K-glypican glypican 4 protein-coding 159.25-3 chr1 119677152 119677706 + 0.5 NA Intergenic Intergenic -29163 NM_001080470 90874 Hs.381105 NM_001080470 ENSG00000143067 ZNF697 - zinc finger protein 697 protein-coding 195.75-26 chr16 63079093 63079581 + 0.5 NA Intergenic Tigger7|DNA|TcMar-Tigger -1042899 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 197.25-48 chr8 74543335 74544014 + 0.5 NA Intergenic Intergenic -4869 NR_049860 100847058 NR_049860 ENSG00000266502 MIR5681A - microRNA 5681a ncRNA 217.5-26 chr2 211038287 211038805 + 0.5 NA Intergenic L1PA6|LINE|L1 420975 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 180.5-36 chr2 39446007 39446628 + 0.5 NA intron (NR_037875, intron 1 of 5) Tigger3b|DNA|TcMar-Tigger 8901 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 166-32 chr17 73789202 73789568 + 0.5 NA intron (NR_040020, intron 1 of 6) intron (NR_040020, intron 1 of 6) 2563 NR_040020 400620 Hs.348644 NR_040020 ENSG00000234721 LINC02092 - long intergenic non-protein coding RNA 2092 ncRNA 155-62 chr3 152530869 152531243 + 0.5 NA Intergenic L1PB4|LINE|L1 -190066 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 173-91 chr9 205996 206554 + 0.5 NA Intergenic MER41D|LTR|ERV1 -8590 NM_203447 81704 Hs.132599 NM_203447 ENSG00000107099 DOCK8 HEL-205|MRD2|ZIR8 dedicator of cytokinesis 8 protein-coding 153.5-28 chr14 47275603 47276067 + 0.5 NA intron (NM_001113498, intron 2 of 16) intron (NM_001113498, intron 2 of 16) 67411 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 283.75-4 chr2 197973168 197974037 + 0.5 NA intron (NM_006226, intron 1 of 5) L2a|LINE|L2 169009 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 155.5-50 chr2 160124788 160125230 + 0.5 NA intron (NM_001282390, intron 10 of 13) intron (NM_001282390, intron 10 of 13) -62394 NM_001007267 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 173.5-70 chr5 141152931 141153429 + 0.5 NA 3' UTR (NM_001303145, exon 2 of 2) 3' UTR (NM_001303145, exon 2 of 2) -2819 NR_001280 54661 Hs.284307 NR_001280 ENSG00000255622 PCDHB17P ME4|PCDH-psi1|PCDHB17 protocadherin beta 17 pseudogene pseudo 150.5-79 chr3 150413878 150414234 + 0.5 NA intron (NM_001303264, intron 1 of 2) intron (NM_001303264, intron 1 of 2) 5758 NM_001303264 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 161.75-16 chr14 22128932 22129307 + 0.5 NA Intergenic L1PA13|LINE|L1 303634 NR_148362 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 162.25-73 chr5 97271011 97271562 + 0.5 NA Intergenic L1PA13|LINE|L1 -88039 NM_001159749 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 198.75-13 chr12 91907654 91908394 + 0.5 NA Intergenic LTR84a|LTR|ERVL 233689 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 174.75-6 chr1 195044728 195045201 + 0.5 NA Intergenic Intergenic 1043751 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 216.75-15 chr2 83260614 83261330 + 0.5 NA Intergenic L1PA15|LINE|L1 -261842 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 187-12 chr13 59676637 59677190 + 0.5 NA intron (NM_001258366, intron 26 of 26) intron (NM_001258366, intron 26 of 26) -335805 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 214.25-18 chr2 96366004 96366585 + 0.5 NA intron (NM_001281712, intron 13 of 16) intron (NM_001281712, intron 13 of 16) 30528 NM_001281710 23397 Hs.308045 NM_015341 ENSG00000121152 NCAPH BRRN1|CAP-H|CAPH|MCPH23 non-SMC condensin I complex subunit H protein-coding 181-49 chr8 63335425 63336097 + 0.5 NA Intergenic MER77|LTR|ERVL -130088 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 157.25-113 chrX 56263623 56264070 + 0.5 NA intron (NM_001324100, intron 2 of 3) intron (NM_001324100, intron 2 of 3) 30688 NM_001324099 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 203.75-2 chr11 110144051 110144715 + 0.5 NA intron (NM_033390, intron 2 of 5) MIRb|SINE|MIR 50991 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 150.75-10 chr10 83135783 83136312 + 0.5 NA Intergenic L1MD1|LINE|L1 541042 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 149-62 chr3 9785800 9786330 + 0.5 NA intron (NR_103488, intron 4 of 6) AluY|SINE|Alu -6430 NM_001024960 10093 Hs.323342 NM_005718 ENSG00000241553 ARPC4 ARC20|P20-ARC actin related protein 2/3 complex subunit 4 protein-coding 213.5-17 chr14 42709071 42709761 + 0.5 NA Intergenic Intergenic 1102560 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 170.25-77 chr8 109357228 109357751 + 0.5 NA Intergenic Intergenic -4972 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 167.25-40 chr2 187056400 187057001 + 0.5 NA Intergenic Intergenic -207530 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 151.25-75 chr5 113478243 113478611 + 0.5 NA intron (NM_001085377, intron 1 of 18) L2|LINE|L2 10026 NM_001085377 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 238.75-10 chr14 30141721 30142256 + 0.5 NA Intergenic Intergenic -214141 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 185.75-19 chr14 42136235 42136734 + 0.5 NA Intergenic L1MC3|LINE|L1 529628 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 169.75-29 chr14 25682929 25683418 + 0.5 NA Intergenic Intergenic -632876 NM_001351941 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 202.25-33 chr2 144393337 144393904 + 0.5 NA intron (NM_001171653, intron 8 of 8) intron (NM_001171653, intron 8 of 8) -60551 NM_001354360 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 209.25-32 chr4 20676636 20677165 + 0.5 NA Intergenic Intergenic -19382 NR_133933 133015 Hs.479298 NM_145048 ENSG00000163138 PACRGL C4orf28 parkin coregulated like protein-coding 148.5-24 chr13 65828643 65829078 + 0.5 NA Intergenic L1MC5a|LINE|L1 -37187 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 183.75-83 chr6 62025376 62025863 + 0.5 NA intron (NR_146874, intron 3 of 13) L1MC5|LINE|L1 260606 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 195.25-35 chr22 39127675 39128279 + 0.5 NA Intergenic AluSg|SINE|Alu 24703 NM_175709 23492 Hs.356416 NM_175709 ENSG00000100307 CBX7 - chromobox 7 protein-coding 149.25-74 chr4 57151406 57151911 + 0.5 NA intron (NR_034081, intron 1 of 4) intron (NR_034081, intron 1 of 4) -41273 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 158.75-66 chr5 148312669 148313295 + 0.5 NA intron (NM_032566, intron 1 of 3) intron (NM_032566, intron 1 of 3) 559 NM_032566 84651 Hs.244569 NM_032566 ENSG00000145879 SPINK7 ECG2|ECRG2 serine peptidase inhibitor, Kazal type 7 (putative) protein-coding 146.75-36 chr16 68126335 68126830 + 0.5 NA exon (NM_173165, exon 3 of 10) exon (NM_173165, exon 3 of 10) 41212 NM_173165 4775 Hs.436585 NM_004555 ENSG00000072736 NFATC3 NF-AT4c|NFAT4|NFATX nuclear factor of activated T cells 3 protein-coding 176.5-2 chr1 115050850 115051504 + 0.5 NA intron (NM_001308316, intron 6 of 6) AluJb|SINE|Alu 17231 NM_001277991 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 186.5-64 chr6 151407386 151407950 + 0.5 NA intron (NM_001271937, intron 9 of 10) AluY|SINE|Alu -16109 NM_020861 57621 Hs.520073 NM_020861 ENSG00000181472 ZBTB2 ZNF437 zinc finger and BTB domain containing 2 protein-coding 215.75-42 chr8 129415226 129416014 + 0.5 NA intron (NR_130920, intron 1 of 3) LTR16E2|LTR|ERVL 68522 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 171-47 chr4 69780298 69780843 + 0.5 NA Intergenic Intergenic -19950 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 300.5-13 chr22 16800153 16800965 + 0.5 NA intron (NM_001318251, intron 2 of 3) intron (NM_001318251, intron 2 of 3) 21140 NM_001318251 150165 Hs.356069 NM_175878 ENSG00000172967 XKR3 XRG3|XTES XK related 3 protein-coding 156-12 chr10 51440147 51440674 + 0.5 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 140837 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 424-2 chr8 131172060 131173250 + 0.5 NA Intergenic Intergenic -131746 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 160.75-56 chr2 21833685 21834125 + 0.5 NA Intergenic Intergenic -123253 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 175.5-22 chr13 91474087 91474597 + 0.5 NA intron (NM_004466, intron 2 of 7) intron (NM_004466, intron 2 of 7) 75721 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 159.5-59 chr4 24082582 24083121 + 0.5 NA intron (NM_001330752, intron 2 of 13) intron (NM_001330752, intron 2 of 13) -192804 NR_148984 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 157-8 chr10 14256383 14256855 + 0.5 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 74265 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 233.5-14 chr22 24497237 24498032 + 0.5 NA intron (NM_016327, intron 1 of 9) intron (NM_016327, intron 1 of 9) 2302 NM_016327 51733 Hs.731656 NM_016327 ENSG00000100024 UPB1 BUP1 beta-ureidopropionase 1 protein-coding 180.5-14 chr13 22161649 22162281 + 0.5 NA Intergenic L1MB7|LINE|L1 -48320 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 145.75-46 chr18 69105525 69106042 + 0.5 NA Intergenic Intergenic -295105 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 178.25-22 chr16 12666281 12666744 + 0.5 NA intron (NM_001099455, intron 2 of 2) MER63B|DNA|hAT-Blackjack -53809 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 198-28 chr4 80608652 80609119 + 0.5 NA intron (NM_001206997, intron 4 of 6) (TG)n|Simple_repeat|Simple_repeat 273165 NM_001206997 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 183-32 chr22 35586609 35587131 + 0.5 NA Intergenic MLT1F|LTR|ERVL-MaLR 30459 NM_005368 4151 Hs.517586 NM_005368 ENSG00000198125 MB PVALB|myoglobgin myoglobin protein-coding 174.5-79 chr8 64041036 64041542 + 0.5 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 271859 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 166-22 chr14 62302239 62302796 + 0.5 NA Intergenic Intergenic -162544 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 180-58 chr6 44801085 44801572 + 0.5 NA Intergenic Intergenic -249447 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 159-73 chr6 72384738 72385273 + 0.5 NA intron (NM_001168411, intron 1 of 5) intron (NM_001168411, intron 1 of 5) 18259 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 151.75-80 chr5 125789951 125790323 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 296876 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 148-21 chr11 82329648 82330136 + 0.5 NA intron (NR_120571, intron 3 of 7) L1MDa|LINE|L1 74021 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 150-28 chr14 71146608 71147072 + 0.5 NA Intergenic MIRb|SINE|MIR -173636 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 177-58 chr6 72303256 72303959 + 0.5 NA TTS (NM_001350452) TTS (NM_001350452) -63139 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 198.75-33 chr3 2263510 2264151 + 0.5 NA intron (NM_001206955, intron 1 of 23) L1MA4|LINE|L1 25001 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 244.5-33 chrX 154905905 154906446 + 0.5 NA intron (NM_000132, intron 15 of 25) L1ME4a|LINE|L1 -18717 NR_036259 100422985 NR_036259 ENSG00000221190 MIR1184-2 - microRNA 1184-2 ncRNA 155.25-89 chr8 86818448 86818877 + 0.5 NA Intergenic Intergenic -47753 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 192.5-39 chr3 174725203 174725712 + 0.5 NA Intergenic Intergenic -133877 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 148-90 chr7 98751697 98752065 + 0.5 NA Intergenic Intergenic 118133 NM_001134451 222865 Hs.270753 NM_152913 ENSG00000166448 TMEM130 - transmembrane protein 130 protein-coding 152.25-38 chr2 14177694 14178300 + 0.5 NA Intergenic Intergenic 222961 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 176.5-11 chr11 39919120 39919682 + 0.5 NA Intergenic Intergenic 373729 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 182-31 chr2 181779673 181780196 + 0.5 NA Intergenic Intergenic -99269 NM_002500 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 205.25-35 chr6 106284123 106284805 + 0.5 NA intron (NR_104402, intron 3 of 5) AluJr|SINE|Alu 31802 NR_104403 9474 Hs.486063 NM_004849 ENSG00000057663 ATG5 APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5 autophagy related 5 protein-coding 158.75-71 chr6 131972430 131972938 + 0.5 NA Intergenic MER121|DNA|hAT? -21312 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 190.5-61 chr8 52552635 52553073 + 0.5 NA intron (NM_207413, intron 1 of 4) L1MC3|LINE|L1 12576 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 149.75-66 chr4 150722146 150722561 + 0.5 NA intron (NM_001367550, intron 36 of 56) HAL1b|LINE|L1 140202 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14|MCSKS14 mab-21 like 2 protein-coding 149.25-46 chr2 132801012 132801446 + 0.5 NA intron (NM_207481, intron 11 of 17) MLT1J1|LTR|ERVL-MaLR -114328 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 173-74 chr7 4103069 4103592 + 0.5 NA intron (NM_152744, intron 22 of 44) intron (NM_152744, intron 22 of 44) -26355 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 190.5-46 chr5 13799804 13800274 + 0.5 NA intron (NM_001369, intron 47 of 78) Tigger4|DNA|TcMar-Tigger 144441 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 177-29 chr2 84074030 84074704 + 0.5 NA Intergenic Intergenic -216315 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 161.75-26 chr19 27682163 27682620 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -111040 NR_110691 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 158.5-86 chr5 98810730 98811228 + 0.5 NA Intergenic AluJo|SINE|Alu 37316 NM_001366508 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 149.75-10 chr10 41899772 41900201 + 0.5 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 468059 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 153.25-90 chr5 26497678 26498273 + 0.5 NA Intergenic Intergenic 540611 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 160-49 chr21 22707437 22708042 + 0.5 NA Intergenic Intergenic -371545 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 153.25-51 chr19 53287742 53288128 + 0.5 NA Intergenic Intergenic 3499 NR_159880 112401 Hs.348263 NM_033341 ENSG00000163098 BIRC8 ILP-2|ILP2|RNF136|hILP2 baculoviral IAP repeat containing 8 pseudo 182.75-64 chr6 153206609 153207319 + 0.5 NA Intergenic L1M5|LINE|L1 -75682 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 177.5-56 chr8 86886219 86886649 + 0.5 NA intron (NM_173538, intron 1 of 10) (TATGA)n|Simple_repeat|Simple_repeat 20019 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 184-9 chr10 130325558 130326045 + 0.5 NA Intergenic THE1C|LTR|ERVL-MaLR 189392 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 178.25-55 chr5 88546824 88547261 + 0.5 NA intron (NR_152235, intron 2 of 3) intron (NR_152235, intron 2 of 3) -107952 NR_105021 102546226 Hs.535810 NR_105021 ENSG00000250156 LINC02060 - long intergenic non-protein coding RNA 2060 ncRNA 211-19 chr19 39081729 39082507 + 0.5 NA Intergenic Intergenic -2250 NM_001363687 390928 Hs.448934 NM_001004318 ENSG00000183760 ACP7 PAPL|PAPL1 acid phosphatase 7, tartrate resistant (putative) protein-coding 218.25-21 chr2 227795699 227796475 + 0.5 NA Intergenic Intergenic -17755 NM_001130046 6364 Hs.75498 NM_004591 ENSG00000115009 CCL20 CKb4|Exodus|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38 C-C motif chemokine ligand 20 protein-coding 215.75-23 chr3 168203298 168204020 + 0.5 NA Intergenic SATR2|Satellite|Satellite -45863 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 150.5-35 chr12 85829543 85829921 + 0.5 NA intron (NM_005447, intron 1 of 1) intron (NM_005447, intron 1 of 1) 6677 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 178.75-63 chr7 94506342 94506842 + 0.5 NA Intergenic AluSx|SINE|Alu -3217 NM_022900 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 225.5-36 chr4 121747833 121748361 + 0.5 NA Intergenic Intergenic 16197 NM_001317839 132332 Hs.27524 NM_152399 ENSG00000164112 TMEM155 - transmembrane protein 155 protein-coding 221.25-10 chr12 13715423 13716197 + 0.5 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 264546 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 155.5-81 chr5 9614641 9615258 + 0.5 NA Intergenic L2a|LINE|L2 15402 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 213-16 chr21 14750237 14750986 + 0.5 NA Intergenic Intergenic -107504 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 165.75-69 chr4 32586464 32586921 + 0.5 NA Intergenic Intergenic 235654 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 161.75-95 chr8 136543806 136544241 + 0.5 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 13225 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 169-40 chr21 24981889 24982232 + 0.5 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 141510 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 187.75-17 chr13 57906184 57906770 + 0.5 NA Intergenic L1MEd|LINE|L1 -259350 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 171.25-3 chr1 106407581 106408019 + 0.5 NA Intergenic L2a|LINE|L2 -379547 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 152-47 chr20 54360693 54361253 + 0.5 NA Intergenic Intergenic -114620 NM_018431 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 159.5-18 chr14 47707446 47707960 + 0.5 NA Intergenic MLT1F-int|LTR|ERVL-MaLR -32749 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 187.5-55 chr5 72191839 72192501 + 0.5 NA intron (NM_001324255, intron 3 of 5) intron (NM_001324255, intron 3 of 5) 12383 NM_001324255 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 159.5-89 chr7 86920679 86921185 + 0.5 NA intron (NM_001291991, intron 9 of 20) LTR42|LTR|ERVL 44967 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 168.75-104 chr9 4631464 4632005 + 0.5 NA intron (NR_148443, intron 2 of 7) intron (NR_148443, intron 2 of 7) 30489 NR_148447 55064 Hs.179615 NM_017985 ENSG00000106686 SPATA6L C9orf68|bA6J24.2 spermatogenesis associated 6 like protein-coding 163.5-97 chr6 39744673 39745222 + 0.5 NA Intergenic Intergenic -19524 NM_001351503 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 149.25-90 chr6 108577389 108577970 + 0.5 NA intron (NM_201559, intron 2 of 3) MER5B|DNA|hAT-Charlie 16762 NM_001455 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 166.75-86 chr8 9960530 9960863 + 0.5 NA Intergenic Intergenic -57224 NR_029668 406907 NR_029668 ENSG00000284321 MIR124-1 MIR124A|MIR124A1|MIRN124-1|MIRN124A1|mir-124-1 microRNA 124-1 ncRNA 189.75-61 chr5 108052280 108052697 + 0.5 NA intron (NM_001163315, intron 6 of 8) L1PA8A|LINE|L1 329610 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 161.5-74 chr5 10207047 10207657 + 0.5 NA Intergenic AluSp|SINE|Alu 42536 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 148.75-76 chr5 10529273 10529720 + 0.5 NA Intergenic L1PA10|LINE|L1 -7412 NR_134289 389273 Hs.519206 NR_134289 ENSG00000249160 LINC02213 - long intergenic non-protein coding RNA 2213 ncRNA 215.5-20 chr17 54422364 54422867 + 0.5 NA Intergenic L1PB1|LINE|L1 -478076 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 169.25-2 chr1 147371052 147371631 + 0.5 NA Intergenic L1M5|LINE|L1 128199 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 166-29 chr16 2401810 2402336 + 0.5 NA intron (NR_003574, intron 9 of 16) AluSc|SINE|Alu -27374 NM_001323538 899 Hs.1973 NM_001761 ENSG00000162063 CCNF FBX1|FBXO1 cyclin F protein-coding 165.75-91 chr6 148507742 148508080 + 0.5 NA promoter-TSS (NM_001346508) promoter-TSS (NM_001346508) -588 NM_001346508 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 152.75-40 chr18 6798793 6799230 + 0.5 NA intron (NM_001366230, intron 1 of 17) intron (NM_001366230, intron 1 of 17) -35474 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 202-39 chr5 10616700 10617218 + 0.5 NA intron (NM_001164440, intron 1 of 3) MLT1A0|LTR|ERVL-MaLR 52889 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 196.25-20 chr15 83098303 83099011 + 0.5 NA Intergenic FLAM_C|SINE|Alu -8988 NM_001330385 53346 Hs.513094 NM_023003 ENSG00000136404 TM6SF1 - transmembrane 6 superfamily member 1 protein-coding 230-4 chr13 105509710 105510249 + 0.5 NA Intergenic Intergenic -4298 NR_040247 282706 Hs.558713 NR_040247 ENSG00000232307 DAOA-AS1 DAOA-AS|DAOAAS|G30 DAOA antisense RNA 1 ncRNA 183.75-79 chr6 35787296 35787874 + 0.5 NA intron (NM_001348773, intron 2 of 2) intron (NM_001348773, intron 2 of 2) 6566 NM_001348773 340204 Hs.131296 NM_001010886 ENSG00000204140 CLPSL1 C6orf127|ESP32|dJ510O8.6 colipase like 1 protein-coding 245.5-14 chr15 70777488 70778355 + 0.5 NA Intergenic Intergenic -14363 NM_018003 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 226.5-22 chr4 53284319 53284968 + 0.5 NA intron (NM_152540, intron 3 of 8) intron (NM_152540, intron 3 of 8) 81418 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 186.25-25 chr2 56863380 56863920 + 0.5 NA Intergenic L1MEc|LINE|L1 -677880 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 156-29 chr15 78444534 78444982 + 0.5 NA intron (NM_001354994, intron 2 of 21) L1ME4a|LINE|L1 6337 NM_001320942 3658 Hs.436031 NM_004136 ENSG00000136381 IREB2 ACO3|IRE-BP 2|IRE-BP2|IRP2|IRP2AD|NDCAMA iron responsive element binding protein 2 protein-coding 164.75-92 chr8 109230651 109231179 + 0.5 NA Intergenic Intergenic 99018 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 180.25-31 chr2 62908135 62908528 + 0.5 NA intron (NM_001142615, intron 10 of 22) L1M5|LINE|L1 139380 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 170.25-80 chr8 137002233 137002739 + 0.5 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR 411102 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 153.25-64 chr2 114763363 114763909 + 0.5 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 69912 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 190-44 chr4 62708867 62709624 + 0.5 NA Intergenic Intergenic -547480 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 181.5-24 chr14 65639207 65639768 + 0.5 NA intron (NM_004480, intron 5 of 9) intron (NM_004480, intron 5 of 9) 168385 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 153-92 chr8 124219352 124219853 + 0.5 NA intron (NR_125420, intron 1 of 2) Charlie1a|DNA|hAT-Charlie 27796 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 161.25-43 chr3 1200041 1200559 + 0.5 NA intron (NM_001289080, intron 2 of 22) AluSz|SINE|Alu 107276 NM_001349350 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 194.5-30 chr18 63369329 63369779 + 0.5 NA Intergenic MER77B|LTR|ERVL -2348 NM_002035 2531 Hs.74050 NM_002035 ENSG00000119537 KDSR DHSR|EKVP4|FVT1|SDR35C1 3-ketodihydrosphingosine reductase protein-coding 146-13 chr11 96581542 96581981 + 0.5 NA Intergenic L2|LINE|L2 73336 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 214.25-39 chrX 25481516 25482290 + 0.5 NA Intergenic Intergenic -465938 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 208 chr1 81372574 81373103 + 0.5 NA intron (NM_001366003, intron 2 of 27) intron (NM_001366003, intron 2 of 27) 66443 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 162.5-77 chr6 135879208 135879767 + 0.5 NA intron (NM_018945, intron 1 of 12) intron (NM_018945, intron 1 of 12) 27786 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 194.75-30 chr3 150457160 150457812 + 0.5 NA intron (NR_130136, intron 4 of 4) intron (NR_130136, intron 4 of 4) 49188 NM_001303264 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 202.5-18 chr14 25608582 25609222 + 0.5 NA Intergenic Intergenic -558605 NM_001351941 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 180.25-75 chr8 84461090 84461666 + 0.5 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 45894 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 158.75-5 chr10 31552335 31552693 + 0.5 NA Intergenic Intergenic -152759 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 200-25 chr19 42649554 42650050 + 0.5 NA intron (NR_073180, intron 2 of 2) L1ME3|LINE|L1 -54878 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 146-92 chr8 86911740 86912292 + 0.5 NA intron (NM_173538, intron 3 of 10) L1M2|LINE|L1 45601 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 167.75-104 chrX 81375512 81376035 + 0.5 NA Intergenic MIRc|SINE|MIR 173671 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 162.5-86 chr7 86252963 86253347 + 0.5 NA Intergenic L1MA8|LINE|L1 -390754 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 195.75-61 chr5 112775436 112776126 + 0.5 NA intron (NM_001354895, intron 5 of 15) intron (NM_001354895, intron 5 of 15) 37896 NM_001354899 324 Hs.158932 NM_000038 ENSG00000134982 APC BTPS2|DP2|DP2.5|DP3|GS|PPP1R46 APC regulator of WNT signaling pathway protein-coding 166.5-64 chr5 34615257 34615731 + 0.5 NA Intergenic Intergenic -40834 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 146.25-9 chr10 11592941 11593425 + 0.5 NA intron (NR_125732, intron 2 of 2) intron (NR_125732, intron 2 of 2) -18118 NR_160647 107984208 Hs.590986 NR_160647 LOC107984208 - uncharacterized LOC107984208 ncRNA 222.25-34 chr5 21222527 21223308 + 0.5 NA Intergenic L1MC5|LINE|L1 -236563 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 159-9 chr10 31767604 31768022 + 0.5 NA Intergenic Charlie7|DNA|hAT-Charlie 141113 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 270-2 chr10 115070118 115070890 + 0.5 NA Intergenic MIRc|SINE|MIR -22861 NR_074088 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 215-20 chr3 31787634 31788444 + 0.5 NA intron (NM_001174060, intron 3 of 10) intron (NM_001174060, intron 3 of 10) 83826 NR_049771 100874206 Hs.662428 NR_049771 ENSG00000232490 OSBPL10-AS1 - OSBPL10 antisense RNA 1 ncRNA 191-29 chr2 57536219 57536821 + 0.5 NA Intergenic L1MC2|LINE|L1 -371131 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 176-49 chr4 99290149 99290725 + 0.5 NA intron (NR_037884, intron 6 of 9) intron (NR_037884, intron 6 of 9) 548 NM_000667 124 Hs.654433 NM_000667 ENSG00000187758 ADH1A ADH1 alcohol dehydrogenase 1A (class I), alpha polypeptide protein-coding 168-16 chr10 125264830 125265339 + 0.5 NA Intergenic Intergenic -104054 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 163.5-35 chr14 86129576 86129990 + 0.5 NA TTS (NR_110155) TTS (NR_110155) 195105 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 162.25-99 chr8 102110040 102110522 + 0.5 NA intron (NM_001040624, intron 1 of 7) L1ME4c|LINE|L1 14053 NM_001040628 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 160.5-2 chr1 25123384 25123835 + 0.5 NA Intergenic ORSL|DNA|hAT-Tip100 100106 NR_039623 100616365 NR_039623 ENSG00000264371 MIR4425 - microRNA 4425 ncRNA 181.75-46 chr3 104382613 104383156 + 0.5 NA Intergenic L1MDa|LINE|L1 -858768 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 174-23 chr16 24039478 24040078 + 0.5 NA intron (NM_002738, intron 5 of 16) LTR16A1|LTR|ERVL -163338 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 160.25-78 chr8 137457123 137457706 + 0.5 NA Intergenic Intergenic -43826 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 152.5-90 chr5 67027750 67028167 + 0.5 NA intron (NM_001297651, intron 1 of 25) L2a|LINE|L2 23303 NM_001290227 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 269.25-4 chr10 21874196 21874991 + 0.5 NA intron (NM_022365, intron 8 of 11) L1MB7|LINE|L1 129137 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 151.25-35 chr18 68940526 68941071 + 0.5 NA intron (NM_001093729, intron 8 of 9) intron (NM_001093729, intron 8 of 9) 142718 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 146-74 chr6 9934075 9934528 + 0.5 NA Intergenic Intergenic -470201 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 209.5-19 chr16 62897782 62898359 + 0.5 NA Intergenic Intergenic -861632 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 160.25-79 chr9 86065227 86065706 + 0.5 NA intron (NM_016548, intron 3 of 9) intron (NM_016548, intron 3 of 9) 34092 NM_016548 51280 Hs.494337 NM_016548 ENSG00000135052 GOLM1 C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3 golgi membrane protein 1 protein-coding 186.25-6 chr11 24297718 24298175 + 0.5 NA Intergenic Intergenic -199107 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 169-48 chr4 116603057 116603549 + 0.5 NA Intergenic L1M1|LINE|L1 303578 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 153.5-84 chr5 58848375 58848910 + 0.5 NA intron (NM_138453, intron 4 of 4) MIR|SINE|MIR 151256 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 187.5-4 chr1 110350701 110351357 + 0.5 NA Intergenic Intergenic 11706 NM_022768 64783 Hs.435947 NM_022768 ENSG00000162775 RBM15 OTT|OTT1|SPEN RNA binding motif protein 15 protein-coding 150-93 chr8 134247566 134248035 + 0.5 NA Intergenic L1MA3|LINE|L1 -350271 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 149.75-14 chr10 83506276 83506816 + 0.5 NA Intergenic L1MEc|LINE|L1 170543 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 226.75-9 chr15 98528338 98528960 + 0.5 NA Intergenic Intergenic -14313 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 150.5-60 chr2 61858166 61858573 + 0.5 NA Intergenic Intergenic -4309 NM_001201543 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 168.25-82 chr9 80303710 80304237 + 0.5 NA Intergenic L1M4b|LINE|L1 328950 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 160.25-37 chr2 164930750 164931378 + 0.5 NA intron (NM_001199148, intron 6 of 10) L1PA13|LINE|L1 24461 NM_001351540 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 145.75-74 chr3 42718618 42719122 + 0.5 NA intron (NM_144719, intron 13 of 15) MER41-int|LTR|ERV1 -13705 NR_046732 100874114 Hs.669654 NR_046732 ENSG00000173811 CCDC13-AS1 - CCDC13 antisense RNA 1 ncRNA 248.25-2 chr10 64909515 64910145 + 0.5 NA intron (NR_134456, intron 1 of 1) HAL1ME|LINE|L1 14688 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 189-53 chr6 55619268 55619772 + 0.5 NA Intergenic Intergenic -40306 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 213-17 chr21 43595006 43595575 + 0.5 NA intron (NM_007031, intron 7 of 8) L1MEd|LINE|L1 14699 NR_106718 102464825 NR_106718 ENSG00000278433 MIR6070 hsa-mir-6070 microRNA 6070 ncRNA 152.5-110 chr8 82696719 82697202 + 0.5 NA Intergenic L2c|LINE|L2 -215144 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 206.5 chr1 11058442 11059226 + 0.5 NA exon (NM_003132, exon 3 of 8) exon (NM_003132, exon 3 of 8) 1184 NM_003132 6723 Hs.76244 NM_003132 ENSG00000116649 SRM PAPT|SPDSY|SPS1|SRML1 spermidine synthase protein-coding 242.5-10 chr15 65896137 65896789 + 0.5 NA 3' UTR (NM_032445, exon 23 of 23) 3' UTR (NM_032445, exon 23 of 23) 26972 NM_001206836 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 176.75-94 chrX 138579548 138580071 + 0.5 NA Intergenic Intergenic 87984 NR_030229 574507 NR_030229 ENSG00000207800 MIR504 MIRN504|hsa-mir-504|mir-504 microRNA 504 ncRNA 164.5-64 chr5 29871610 29872015 + 0.5 NA Intergenic L1M1|LINE|L1 -8748 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 163-67 chr5 87664452 87664958 + 0.5 NA intron (NR_149089, intron 1 of 1) intron (NR_149089, intron 1 of 1) 2663 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 216.75-6 chr14 76285512 76286342 + 0.5 NA Intergenic L1MEg|LINE|L1 -85420 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 162-51 chr3 192843291 192843780 + 0.5 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) 74321 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 237.25-11 chr2 211438128 211438911 + 0.5 NA intron (NM_001042599, intron 20 of 26) MIR|SINE|MIR 820948 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 175.25-29 chr17 61304865 61305395 + 0.5 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 62574 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 151.75-16 chr11 75932213 75932659 + 0.5 NA intron (NM_003369, intron 6 of 14) AluSc|SINE|Alu 117226 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 177-61 chr7 3851936 3852554 + 0.5 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -277440 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 228.25-3 chr12 126562642 126563168 + 0.5 NA Intergenic L1MEh|LINE|L1 -113578 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 149.75-59 chr3 131683126 131683603 + 0.5 NA intron (NM_130808, intron 6 of 15) L1MA3|LINE|L1 -180393 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 165.75-51 chr2 222080135 222080524 + 0.5 NA Intergenic Intergenic -217818 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 188.5-62 chr6 149781705 149782298 + 0.5 NA intron (NM_001252050, intron 3 of 6) L1MB2|LINE|L1 32260 NM_001360452 5110 Hs.279257 NM_005389 ENSG00000120265 PCMT1 PIMT protein-L-isoaspartate (D-aspartate) O-methyltransferase protein-coding 168.5-27 chr14 72118509 72119096 + 0.5 NA intron (NM_001370288, intron 2 of 16) Tigger15a|DNA|TcMar-Tigger 185275 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 161.5-26 chr11 131968847 131969337 + 0.5 NA intron (NR_147849, intron 2 of 6) intron (NR_147849, intron 2 of 6) 58274 NM_001352008 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 189.75-33 chr18 22291054 22291663 + 0.5 NA Intergenic L1MEg|LINE|L1 121921 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 152.75-37 chr15 92798057 92798662 + 0.5 NA Intergenic AluSq|SINE|Alu 2875 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 167.5-89 chr7 100066141 100066655 + 0.5 NA intron (NM_017715, intron 5 of 5) AluJo|SINE|Alu 15325 NM_001318136 7551 Hs.435302 NM_017715 ENSG00000166526 ZNF3 A8-51|HF.12|KOX25|PP838|Zfp113 zinc finger protein 3 protein-coding 154.5-83 chr6 72331251 72331797 + 0.5 NA intron (NM_001350466, intron 19 of 24) intron (NM_001350466, intron 19 of 24) -35222 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 150.5-68 chr2 221004231 221004783 + 0.5 NA Intergenic AluJb|SINE|Alu 567797 NM_004438 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 174.75-55 chr6 54993734 54994220 + 0.5 NA Intergenic L1PA15-16|LINE|L1 -112483 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 162.5-94 chrX 53565000 53565548 + 0.5 NA intron (NM_031407, intron 49 of 83) intron (NM_031407, intron 49 of 83) -8000 NR_029484 406889 NR_029484 ENSG00000208012 MIRLET7F2 LET7F2|MIRNLET7F2|let-7f-2 microRNA let-7f-2 ncRNA 250.25-26 chr8 143291493 143292412 + 0.5 NA intron (NM_030895, intron 1 of 2) intron (NM_030895, intron 1 of 2) 535 NM_030895 79943 Hs.512740 NM_030895 ENSG00000185730 ZNF696 - zinc finger protein 696 protein-coding 236.25-21 chr4 97812579 97813229 + 0.5 NA intron (NM_174952, intron 9 of 10) L2|LINE|L2 330572 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 171.25-53 chr6 148965179 148965690 + 0.5 NA promoter-TSS (NR_038408) promoter-TSS (NR_038408) -750 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 210.5-38 chr5 166218147 166218868 + 0.5 NA Intergenic Intergenic 707863 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 202-18 chr2 13982888 13983353 + 0.5 NA Intergenic Intergenic 417838 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 165.75-77 chr5 45416250 45416775 + 0.5 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 279868 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 239.25-16 chr20 31251895 31252618 + 0.5 NA Intergenic L1MA6|LINE|L1 -5408 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 210.75-22 chr15 67738628 67739428 + 0.5 NA intron (NM_001206804, intron 17 of 21) AluJr|SINE|Alu -86481 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 220.25-22 chr2 151252903 151253582 + 0.5 NA intron (NM_198557, intron 2 of 3) L2a|LINE|L2 8621 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 192.25-33 chr2 40657189 40657697 + 0.5 NA Intergenic Intergenic -145008 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 162.75-24 chr14 24942950 24943331 + 0.5 NA intron (NM_001351943, intron 3 of 6) intron (NM_001351943, intron 3 of 6) 105860 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 189.75-40 chr2 143805502 143805884 + 0.5 NA Intergenic Intergenic -131374 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 159.25-43 chr20 58282739 58283369 + 0.5 NA intron (NR_003505, intron 3 of 16) L1MC2|LINE|L1 26385 NR_003505 55370 Hs.473179 NM_018498 PPP4R1L C20orf192|PPP4R1P1|PRO1085 protein phosphatase 4 regulatory subunit 1 like (pseudogene) pseudo 158.75-62 chr5 8878568 8878989 + 0.5 NA intron (NR_109932, intron 1 of 2) L1MA2|LINE|L1 39046 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 180.5-43 chr2 208307688 208308133 + 0.5 NA intron (NM_015040, intron 12 of 41) intron (NM_015040, intron 12 of 41) 41643 NM_152671 200576 Hs.744997 NM_015040 ENSG00000115020 PIKFYVE CFD|FAB1|HEL37|PIP5K|PIP5K3|ZFYVE29 phosphoinositide kinase, FYVE-type zinc finger containing protein-coding 198.25-60 chr8 144376523 144377276 + 0.5 NA intron (NM_174922, intron 1 of 14) intron (NM_174922, intron 1 of 14) 2852 NM_174922 203054 Hs.283374 NM_174922 ENSG00000173137 ADCK5 - aarF domain containing kinase 5 protein-coding 162-80 chr8 131385149 131385728 + 0.5 NA Intergenic L1MB3|LINE|L1 -344529 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 176.75-60 chr3 193150357 193150837 + 0.5 NA Intergenic L1MB3|LINE|L1 -90625 NM_001366112 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 153-89 chr8 31066860 31067208 + 0.5 NA exon (NM_000553, exon 6 of 35) exon (NM_000553, exon 6 of 35) -33678 NM_001323312 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 156.25-92 chr8 78067796 78068304 + 0.5 NA Intergenic Intergenic -448290 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 187-5 chr11 76982574 76983153 + 0.5 NA intron (NM_001300953, intron 3 of 9) L1ME2|LINE|L1 -51535 NM_138706 192134 Hs.352622 NM_138706 ENSG00000198488 B3GNT6 B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding 221.5-14 chr12 113120648 113121471 + 0.5 NA intron (NM_004658, intron 6 of 21) MLT1K|LTR|ERVL-MaLR 14540 NM_001301202 8437 Hs.528693 NM_004658 ENSG00000111344 RASAL1 RASAL RAS protein activator like 1 protein-coding 199.5 chr1 192026143 192026671 + 0.5 NA Intergenic L1PA13|LINE|L1 -132055 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 184.75-15 chr11 103131892 103132461 + 0.5 NA intron (NM_001377, intron 13 of 88) L1MDa|LINE|L1 22750 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 157.75-32 chr13 90749632 90750110 + 0.5 NA Intergenic L2a|LINE|L2 176726 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 184.75-27 chr14 45700980 45701445 + 0.5 NA Intergenic Intergenic 14390 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 172-56 chr3 159542046 159542525 + 0.5 NA intron (NM_001197108, intron 1 of 6) L1ME1|LINE|L1 226327 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 186.75-37 chr17 39599590 39600134 + 0.5 NA Intergenic Intergenic 8058 NM_006160 4761 Hs.322431 NM_006160 ENSG00000171532 NEUROD2 EIEE72|NDRF|bHLHa1 neuronal differentiation 2 protein-coding 197-8 chr15 26322469 26322951 + 0.5 NA Intergenic AluSx1|SINE|Alu 206897 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 179.25-62 chr5 82619879 82620517 + 0.5 NA Intergenic L1MCa|LINE|L1 -219957 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 165.75-41 chr2 35582366 35582941 + 0.5 NA Intergenic Intergenic 111248 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 147.5-41 chr2 66046281 66046836 + 0.5 NA Intergenic HAL1|LINE|L1 311770 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 157.75-59 chr2 210764401 210765021 + 0.5 NA Intergenic MER45A|DNA|hAT-Tip100 147140 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 157-60 chr3 63476413 63476940 + 0.5 NA intron (NR_046677, intron 1 of 4) intron (NR_046677, intron 1 of 4) 33364 NM_144642 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 154.25-15 chr10 97305834 97306318 + 0.5 NA Intergenic Intergenic -13195 NM_005479 10023 Hs.126057 NM_005479 ENSG00000165879 FRAT1 - FRAT regulator of WNT signaling pathway 1 protein-coding 148-12 chr1 246662621 246663101 + 0.5 NA intron (NM_152609, intron 10 of 10) MER33|DNA|hAT-Charlie -61548 NM_016002 51097 Hs.498397 NM_016002 ENSG00000143653 SCCPDH CGI-49|NET11 saccharopine dehydrogenase (putative) protein-coding 169.5-27 chr12 44713976 44714548 + 0.5 NA intron (NM_006159, intron 11 of 20) intron (NM_006159, intron 11 of 20) 161399 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 165.75-80 chr5 74713057 74713694 + 0.5 NA intron (NM_001292004, intron 6 of 13) intron (NM_001292004, intron 6 of 13) 28142 NM_000521 3074 Hs.69293 NM_000521 ENSG00000049860 HEXB ENC-1AS|HEL-248|HEL-S-111 hexosaminidase subunit beta protein-coding 219.75-40 chr7 45571343 45571985 + 0.5 NA Intergenic Intergenic -2476 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 178.25-46 chr4 103611635 103612130 + 0.5 NA intron (NM_001059, intron 3 of 4) L2a|LINE|L2 108103 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 278 chr10 121796935 121797579 + 0.5 NA intron (NM_001001976, intron 10 of 11) intron (NM_001001976, intron 10 of 11) 130774 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 187.5-21 chr16 76836970 76837667 + 0.5 NA Intergenic Intergenic -31618 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 153-65 chr4 79177792 79178273 + 0.5 NA intron (NR_038342, intron 3 of 5) intron (NR_038342, intron 3 of 5) 148029 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 175.25-15 chr12 51112380 51112942 + 0.5 NA intron (NM_005653, intron 4 of 14) AluSx1|SINE|Alu -29065 NR_045072 81566 Hs.524425 NM_030809 ENSG00000110925 CSRNP2 C12orf2|C12orf22|FAM130A1|PPP1R72|TAIP-12 cysteine and serine rich nuclear protein 2 protein-coding 201-4 chr1 65611471 65612210 + 0.5 NA intron (NM_001003679, intron 14 of 19) MER3|DNA|hAT-Charlie 86151 NM_001198689 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 236.25-22 chr4 130656169 130656771 + 0.5 NA Intergenic L1PA8|LINE|L1 280109 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 149.25-26 chr14 40687464 40687789 + 0.5 NA Intergenic L1M5|LINE|L1 -267085 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 209.25-35 chr4 58082007 58082591 + 0.5 NA Intergenic AluJb|SINE|Alu 454029 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 168.75-84 chr5 167744827 167745433 + 0.5 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) -9799 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 162.25-68 chr4 188643106 188643643 + 0.5 NA Intergenic Intergenic -133283 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 148-58 chr20 59480713 59481221 + 0.5 NA Intergenic Intergenic -96542 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 183.75-77 chr5 156215164 156215647 + 0.5 NA Intergenic L1MA8|LINE|L1 -111352 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 156-39 chr2 65086660 65087143 + 0.5 NA TTS (NM_004161) TTS (NM_004161) 30485 NM_001319101 23177 Hs.709257 NM_015147 ENSG00000011523 CEP68 KIAA0582 centrosomal protein 68 protein-coding 170.5-4 chr1 202315725 202316365 + 0.5 NA intron (NM_001017403, intron 17 of 17) L1ME4a|LINE|L1 25891 NM_014176 29089 Hs.5199 NM_014176 ENSG00000077152 UBE2T FANCT|HSPC150|PIG50 ubiquitin conjugating enzyme E2 T protein-coding 173.25-35 chr2 26481163 26481748 + 0.5 NA intron (NM_194248, intron 14 of 46) intron (NM_194248, intron 14 of 46) -3331 NM_194322 9381 Hs.91608 NM_004802 ENSG00000115155 OTOF AUNB1|DFNB6|DFNB9|FER1L2|NSRD9 otoferlin protein-coding 170.5-25 chr15 63739959 63740364 + 0.5 NA intron (NM_003922, intron 12 of 77) AluSz6|SINE|Alu 93787 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 200.5-38 chr3 89857003 89857430 + 0.5 NA Intergenic Charlie10b|DNA|hAT-Charlie 749595 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 151.75-62 chr3 29781346 29781730 + 0.5 NA intron (NM_001003792, intron 6 of 13) intron (NM_001003792, intron 6 of 13) 152618 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 164-28 chr2 7012969 7013577 + 0.5 NA intron (NM_001349184, intron 3 of 8) MIR|SINE|MIR 64607 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 171-27 chr18 64111485 64112110 + 0.5 NA intron (NR_033881, intron 1 of 9) intron (NR_033881, intron 1 of 9) 7706 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 160.5-107 chr7 111188023 111188456 + 0.5 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 97112 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 162.75-16 chr11 83912133 83912592 + 0.5 NA intron (NM_001142700, intron 7 of 19) intron (NM_001142700, intron 7 of 19) -229937 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 175.5-40 chr18 4777463 4778019 + 0.5 NA Intergenic Intergenic -303441 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 208.75-39 chr8 61607214 61607890 + 0.5 NA intron (NM_004318, intron 14 of 24) intron (NM_004318, intron 14 of 24) 82259 NM_001164751 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 183.75-39 chr2 6364886 6365365 + 0.5 NA TTS (NR_110251) TTS (NR_110251) 10297 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 193.25-60 chr8 103537592 103538124 + 0.5 NA intron (NM_001348497, intron 1 of 22) intron (NM_001348497, intron 1 of 22) -35948 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 160.75-63 chr2 78443024 78443444 + 0.5 NA Intergenic Intergenic -102297 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 168.5-74 chr4 91107387 91108054 + 0.5 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 872689 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 159.5-102 chr8 137951532 137951868 + 0.5 NA intron (NR_161374, intron 2 of 7) MIR|SINE|MIR 131845 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 173.25-59 chr4 136198135 136198721 + 0.5 NA Intergenic MER2|DNA|TcMar-Tigger -284748 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 164.25-28 chr14 72886248 72886865 + 0.5 NA intron (NM_001280543, intron 1 of 10) L1MB4|LINE|L1 6093 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 181.75-30 chr17 81941606 81942155 + 0.5 NA intron (NM_001145113, intron 2 of 2) intron (NM_001145113, intron 2 of 2) -4552 NM_001330523 5831 Hs.163451 NM_006907 ENSG00000183010 PYCR1 ARCL2B|ARCL3B|P5C|P5CR|PIG45|PP222|PRO3|PYCR pyrroline-5-carboxylate reductase 1 protein-coding 156.25-17 chr12 78409040 78409582 + 0.5 NA Intergenic Intergenic -49565 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 166.25-71 chr9 100288059 100288538 + 0.5 NA intron (NR_134606, intron 13 of 16) MLT1H-int|LTR|ERVL-MaLR 64273 NM_001161584 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 166.5-80 chr7 77910131 77910550 + 0.5 NA exon (NM_001127358, exon 7 of 18) exon (NM_001127358, exon 7 of 18) 70210 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 222-4 chr10 89577677 89578453 + 0.5 NA Intergenic Intergenic 14762 NR_029524 406901 NR_029524 ENSG00000198997 MIR107 MIRN107|miR-107 microRNA 107 ncRNA 166-47 chr22 28625658 28626132 + 0.5 NA intron (NM_001145418, intron 2 of 22) L1MEa|LINE|L1 53970 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 154.25-20 chr11 81821885 81822451 + 0.5 NA Intergenic Intergenic 68668 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 226.25-14 chr2 148180624 148181261 + 0.5 NA intron (NM_018328, intron 3 of 14) L1ME5|LINE|L1 -159338 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 245.25-4 chr10 63666206 63666792 + 0.5 NA Intergenic AluJo|SINE|Alu -144609 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 211.25-6 chr11 106716799 106717566 + 0.5 NA intron (NM_000855, intron 6 of 7) MLT1K|LTR|ERVL-MaLR 301294 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 147-69 chr3 116966383 116966845 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 45183 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 172.75-76 chr9 112601062 112601495 + 0.5 NA intron (NM_133465, intron 2 of 3) intron (NM_133465, intron 2 of 3) -113634 NM_001350649 100133204 Hs.662552 NM_001350649 C9orf147 - chromosome 9 open reading frame 147 protein-coding 176.75-49 chr22 29701848 29702491 + 0.5 NA Intergenic Intergenic -17834 NM_182527 164633 Hs.643608 NM_182527 ENSG00000100314 CABP7 CALN2 calcium binding protein 7 protein-coding 152.5-87 chr5 41260868 41261450 + 0.5 NA intron (NM_001115131, intron 1 of 17) intron (NM_001115131, intron 1 of 17) 310 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 161.75-32 chr2 142027774 142028201 + 0.5 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 103714 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 146.25-2 chr1 34662113 34662535 + 0.5 NA Intergenic L2|LINE|L2 7370 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 160.25-24 chr16 46974128 46974625 + 0.5 NA promoter-TSS (NM_005880) promoter-TSS (NM_005880) -702 NM_005880 10294 Hs.368078 NM_005880 ENSG00000069345 DNAJA2 CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2 DnaJ heat shock protein family (Hsp40) member A2 protein-coding 285.25-9 chr7 53783303 53784206 + 0.5 NA intron (NR_038371, intron 1 of 5) intron (NR_038371, intron 1 of 5) 28177 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 162.25-37 chr2 187310383 187310974 + 0.5 NA Intergenic Intergenic 137574 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 155.75-23 chr12 2658047 2658615 + 0.5 NA intron (NM_199460, intron 36 of 49).2 L1ME3C|LINE|L1 13889 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 161.5-42 chr17 81055154 81055531 + 0.5 NA intron (NM_001144888, intron 2 of 13) intron (NM_001144888, intron 2 of 13) 20191 NM_017450 10458 Hs.128316 NM_006340 ENSG00000175866 BAIAP2 BAP2|FLAF3|IRSP53 BAI1 associated protein 2 protein-coding 151.75-86 chr6 11461813 11462313 + 0.5 NA Intergenic Intergenic -75686 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 220-13 chr22 33735733 33736285 + 0.5 NA intron (NR_038949, intron 5 of 9) L1MB7|LINE|L1 11023 NR_038950 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 155.25-56 chr3 86763949 86764364 + 0.5 NA Intergenic Intergenic 226993 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 165.25-15 chr15 73339715 73340300 + 0.5 NA intron (NM_005477, intron 2 of 7) intron (NM_005477, intron 2 of 7) 28951 NM_005477 10021 Hs.86941 NM_005477 ENSG00000138622 HCN4 SSS2 hyperpolarization activated cyclic nucleotide gated potassium channel 4 protein-coding 145.75-78 chr3 106084411 106084921 + 0.5 NA Intergenic Intergenic -215265 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 163.5-47 chr17 66178590 66179225 + 0.5 NA intron (NM_001353129, intron 2 of 26) intron (NM_001353129, intron 2 of 26) 12985 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 153.75-52 chr3 192233693 192234082 + 0.5 NA intron (NM_004113, intron 4 of 5) L1PA15|LINE|L1 -4743 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 163-31 chr14 68480554 68481028 + 0.5 NA intron (NM_001321818, intron 10 of 10) MER34B-int|LTR|ERV1 147996 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 152.5-105 chr8 3534605 3535026 + 0.5 NA intron (NM_033225, intron 10 of 69) intron (NM_033225, intron 10 of 69) -806364 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 156.5-101 chr7 9475035 9475583 + 0.5 NA Intergenic Intergenic -158961 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 152.25-74 chr4 146850530 146851103 + 0.5 NA intron (NR_133922, intron 8 of 13) intron (NR_133922, intron 8 of 13) 95048 NR_133922 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 161-16 chr11 100350019 100350481 + 0.5 NA intron (NM_001243270, intron 22 of 23) intron (NM_001243270, intron 22 of 23) -337038 NM_152432 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 170.75-14 chr12 99940937 99941398 + 0.5 NA intron (NM_152788, intron 1 of 25) intron (NM_152788, intron 1 of 25) 43487 NM_001352187 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 150.25-39 chr16 10919761 10920245 + 0.5 NA intron (NR_104444, intron 14 of 17) L2a|LINE|L2 22465 NM_014015 28955 Hs.592051 NM_014015 ENSG00000182108 DEXI MYLE Dexi homolog protein-coding 177.75-55 chr4 114773860 114774302 + 0.5 NA Intergenic L1MA4|LINE|L1 117322 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 153.5-61 chr3 17333544 17334080 + 0.5 NA intron (NM_014744, intron 13 of 21) L2a|LINE|L2 366208 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 193.75-44 chr4 27452514 27453045 + 0.5 NA Intergenic MIR|SINE|MIR 235300 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 150.5-42 chr14 71240780 71241373 + 0.5 NA Intergenic Intergenic -79400 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 145.75-134 chrX 45461505 45461975 + 0.5 NA Intergenic L1PA17|LINE|L1 -43648 NR_104644 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 181.25-6 chr10 65765151 65765625 + 0.5 NA intron (NR_120647, intron 5 of 5) intron (NR_120647, intron 5 of 5) 193963 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 159.25-89 chrX 83145681 83146169 + 0.5 NA Intergenic Intergenic -362365 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 167.5-95 chrX 63909345 63909933 + 0.5 NA Intergenic MIR|SINE|MIR -123552 NR_031567 100302115 NR_031567 ENSG00000222532 MIR1468 MIRN1468|hsa-mir-1468|mir-1468 microRNA 1468 ncRNA 174-10 chr10 57609375 57609955 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -305106 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 164.5-91 chr8 21065678 21066222 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 91964 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LINC02153 - long intergenic non-protein coding RNA 2153 ncRNA 194.25-24 chr20 6209791 6210409 + 0.5 NA Intergenic L1MEd|LINE|L1 -86556 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 194.75-31 chr4 54276386 54276914 + 0.5 NA intron (NM_001347829, intron 12 of 22) intron (NM_001347829, intron 12 of 22) 42690 NM_001347830 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 169.5-42 chr2 41635610 41636144 + 0.5 NA Intergenic (GTTTT)n|Simple_repeat|Simple_repeat -241678 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 164.25-93 chr9 85306563 85307062 + 0.5 NA Intergenic L1M5|LINE|L1 435217 NM_015239 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 178.25-25 chr17 73407924 73408546 + 0.5 NA intron (NM_001144952, intron 18 of 44) AluY|SINE|Alu -96234 NM_012121 23580 Hs.3903 NM_012121 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein 4 protein-coding 154.25-48 chr2 151526908 151527462 + 0.5 NA intron (NM_001271208, intron 148 of 182) intron (NM_001271208, intron 148 of 182) 117283 NM_001177665 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 200.25-9 chr10 106609709 106610199 + 0.5 NA intron (NM_001206569, intron 22 of 25) intron (NM_001206569, intron 22 of 25) 469789 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 147.75-54 chr2 66765976 66766402 + 0.5 NA Intergenic Intergenic -62962 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 278.25-10 chr3 193681401 193682207 + 0.5 NA intron (NM_130831, intron 26 of 27) Tigger1|DNA|TcMar-Tigger -54472 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 197.5-62 chrX 50491713 50492300 + 0.5 NA Intergenic L1ME3G|LINE|L1 -21181 NM_001013742 139189 Hs.38132 NM_001013742 ENSG00000274588 DGKK - diacylglycerol kinase kappa protein-coding 160.25-11 chr10 102942155 102942638 + 0.5 NA intron (NM_199076, intron 1 of 6) L1MB3|LINE|L1 -24061 NR_160733 107984265 NR_160733 LOC107984265 - uncharacterized LOC107984265 ncRNA 147.75-58 chr2 189545419 189545930 + 0.5 NA Intergenic Intergenic 35137 NM_014585 30061 Hs.643005 NM_014585 ENSG00000138449 SLC40A1 FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3 solute carrier family 40 member 1 protein-coding 205.75-55 chr9 20984120 20984600 + 0.5 NA intron (NM_017794, intron 41 of 45) Charlie1|DNA|hAT-Charlie 47280 NM_001321903 401494 Hs.716678 NM_001010915 ENSG00000188921 HACD4 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 protein-coding 192.75-59 chr6 139098316 139099005 + 0.5 NA Intergenic LTR28|LTR|ERV1 -36420 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 195.75-67 chr7 46291680 46292187 + 0.5 NA Intergenic Intergenic -370661 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 199.25-10 chr12 17006091 17006786 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 17691 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 146.75-66 chr22 27883309 27883831 + 0.5 NA intron (NM_001284278, intron 7 of 11) MER5A|DNA|hAT-Charlie 35644 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 180.25-78 chr8 126977273 126977855 + 0.5 NA Intergenic Intergenic -35590 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 156.75-59 chr20 47625726 47626251 + 0.5 NA intron (NM_181659, intron 5 of 22) MER2|DNA|TcMar-Tigger 124101 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 160.25-55 chr4 130951277 130951673 + 0.5 NA Intergenic L1MC1|LINE|L1 575114 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 170.5-56 chr4 83936558 83937126 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR 362327 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 201-13 chr14 29384389 29385055 + 0.5 NA Intergenic Intergenic 542374 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 165.25-6 chr10 39005848 39006328 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 309492 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 147.25-27 chr12 114282193 114282572 + 0.5 NA Intergenic MER53|DNA|hAT -40612 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 174.5-7 chr1 161828073 161828538 + 0.5 NA intron (NM_007348, intron 9 of 15) L1MEd|LINE|L1 61985 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 146.5-14 chr11 28446483 28446865 + 0.5 NA Intergenic Intergenic 30874 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 276.25-18 chrX 95542187 95543086 + 0.5 NA Intergenic L1MB7|LINE|L1 -479410 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 165.25-23 chr2 22882367 22882817 + 0.5 NA Intergenic Intergenic 346113 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 206.75-16 chr15 56930446 56931027 + 0.5 NA intron (NM_207038, intron 3 of 19) intron (NM_207038, intron 3 of 19) 11291 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 188.25-48 chr5 114859152 114859696 + 0.5 NA Intergenic Intergenic -86011 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 231-7 chr15 25358630 25359378 + 0.5 NA intron (NM_001354542, intron 6 of 11) intron (NM_001354542, intron 6 of 11) 79225 NM_001354526 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 184-56 chr8 107048741 107049337 + 0.5 NA Intergenic MER94|DNA|hAT-Blackjack -278795 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 174.5-45 chr20 7379546 7380114 + 0.5 NA Intergenic ERVL-B4-int|LTR|ERVL 8222 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 146.5-48 chr2 40595236 40595774 + 0.5 NA Intergenic Intergenic -83070 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 163.75-79 chrX 83698156 83698752 + 0.5 NA Intergenic L1PB1|LINE|L1 -162672 NM_001271680 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 147.75-91 chr5 158766437 158766934 + 0.5 NA intron (NM_001324107, intron 10 of 15) L1ME4c|LINE|L1 331271 NM_001364159 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 203.25-12 chr14 83770456 83771220 + 0.5 NA Intergenic L1ME3C|LINE|L1 1128206 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 181-24 chr2 155910411 155911108 + 0.5 NA Intergenic Intergenic 344172 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 211.25-29 chr3 86855577 86856146 + 0.5 NA Intergenic Intergenic 135288 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 184.75-32 chr15 72147077 72147502 + 0.5 NA Intergenic L2a|LINE|L2 28886 NM_001172111 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 148.75-21 chr11 107269186 107269769 + 0.5 NA Intergenic MIRc|SINE|MIR 188369 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19 like cell cycle control factor 2 protein-coding 150.25-102 chr8 80472125 80472556 + 0.5 NA Intergenic L1PA5|LINE|L1 -13253 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 177.25-27 chr16 76099384 76099782 + 0.5 NA Intergenic L1MB8|LINE|L1 -177818 NM_001322181 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 157-62 chr3 68404039 68404570 + 0.5 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -96333 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 190.75-44 chr3 108069573 108070029 + 0.5 NA intron (NM_198793, intron 3 of 8) intron (NM_198793, intron 3 of 8) 21287 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 179.25-25 chr13 67243524 67244235 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -13543 NM_001318373 5101 Hs.654709 NM_020403 ENSG00000184226 PCDH9 - protocadherin 9 protein-coding 284.25-11 chr8 136847829 136848777 + 0.5 NA intron (NR_147196, intron 4 of 5) L1PA16|LINE|L1 317505 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 230.25-20 chr2 141567793 141568563 + 0.5 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 563523 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 203.25-11 chr14 43010771 43011361 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 1404210 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 236.75-3 chr1 118747352 118748025 + 0.5 NA Intergenic L1M2|LINE|L1 240655 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 209.75-2 chr1 119818057 119818681 + 0.5 NA Intergenic Intergenic -6909 NM_001159352 83998 Hs.660883 NM_032044 ENSG00000134193 REG4 GISP|REG-IV|RELP regenerating family member 4 protein-coding 167.75-54 chr22 35176953 35177377 + 0.5 NA intron (NR_126356, intron 2 of 5) intron (NR_126356, intron 2 of 5) 53891 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 163.25-65 chr6 45036776 45037223 + 0.5 NA intron (NM_001350327, intron 2 of 9) HAL1|LINE|L1 160771 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 223.25-34 chr8 92246013 92246826 + 0.5 NA Intergenic Intergenic -143034 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 153.75-67 chr5 119484517 119485002 + 0.5 NA intron (NM_001199291, intron 9 of 24) intron (NM_001199291, intron 9 of 24) 32262 NM_001199292 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 149.25-99 chr7 33688211 33688767 + 0.5 NA Intergenic Intergenic -216426 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 210-36 chr22 27149262 27149874 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 -37948 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 176.25-39 chr2 143550923 143551527 + 0.5 NA intron (NM_018460, intron 10 of 13) AluJb|SINE|Alu -385842 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 159.75-63 chr3 95482117 95482684 + 0.5 NA Intergenic MER101B|LTR|ERV1 200793 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 201-17 chr16 61645543 61646190 + 0.5 NA Intergenic MLT2B1|LTR|ERVL 390572 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 175.5-26 chr14 45285150 45285719 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -32232 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 199.25-12 chr13 50625014 50625720 + 0.5 NA Intergenic L1PB3|LINE|L1 -97918 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 235-14 chr3 56766495 56767207 + 0.5 NA intron (NM_001128615, intron 5 of 12) L1ME4a|LINE|L1 8866 NM_001128616 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 221.75-23 chr2 119291760 119292335 + 0.5 NA Intergenic MIRb|SINE|MIR -42976 NR_046721 100874111 Hs.704682 NR_046721 ENSG00000229867 STEAP3-AS1 - STEAP3 antisense RNA 1 ncRNA 232-22 chr5 144620890 144621424 + 0.5 NA Intergenic Intergenic 415766 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 179.5-70 chr7 54188730 54189304 + 0.5 NA Intergenic Intergenic -141680 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 163.25-72 chr7 90935615 90936183 + 0.5 NA intron (NM_012395, intron 7 of 13) AluJo|SINE|Alu 226083 NM_001287136 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 169.75-71 chr7 78986026 78986512 + 0.5 NA intron (NM_001301128, intron 2 of 20) MIRc|SINE|MIR -22719 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 174.25-45 chr3 197263438 197263902 + 0.5 NA intron (NM_001366216, intron 4 of 23) AluSz|SINE|Alu 30278 NR_039960 100616216 NR_039960 ENSG00000265850 MIR4797 - microRNA 4797 ncRNA 188.5-36 chr3 37968470 37968937 + 0.5 NA promoter-TSS (NR_029499) promoter-TSS (NR_029499) -701 NR_029499 407015 NR_029499 ENSG00000199075 MIR26A1 MIR26A|MIRN26A1|mir-26a-1 microRNA 26a-1 ncRNA 182.75-69 chr8 31404143 31404762 + 0.5 NA Intergenic L1MCa|LINE|L1 -235300 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 267.5-21 chr7 8932306 8933143 + 0.5 NA Intergenic Intergenic 499115 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 181.5-78 chrX 83373013 83373535 + 0.5 NA Intergenic L1M3|LINE|L1 -135016 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 167.25-20 chr12 85626484 85626904 + 0.5 NA Intergenic Intergenic 209715 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 146.75-78 chr4 31894880 31895402 + 0.5 NA Intergenic Intergenic -102238 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 226.25-36 chr9 34796404 34797166 + 0.5 NA Intergenic L1ME1|LINE|L1 41801 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 219.5-27 chr7 31574707 31575443 + 0.5 NA intron (NM_194300, intron 6 of 12) MLT1I|LTR|ERVL-MaLR 22073 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 183.25-3 chr1 107604093 107604683 + 0.5 NA intron (NM_006113, intron 22 of 26) intron (NM_006113, intron 22 of 26) 84111 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 148.25-52 chr2 222463835 222464290 + 0.5 NA intron (NM_001320833, intron 2 of 5) MER121|DNA|hAT? 39519 NM_001320833 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 190-35 chr3 67929207 67929699 + 0.5 NA intron (NR_109992, intron 6 of 6) L1ME3G|LINE|L1 -62139 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 198-3 chr10 25794173 25794676 + 0.5 NA Intergenic Intergenic 139286 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 233.5-30 chr7 16844862 16845368 + 0.5 NA Intergenic L2b|LINE|L2 36868 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 249.25-10 chr21 31949112 31949870 + 0.5 NA intron (NM_014586, intron 4 of 10) intron (NM_014586, intron 4 of 10) 76471 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 202.25-42 chr3 156118865 156119401 + 0.5 NA Intergenic Intergenic -1415 NM_172160 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 162-19 chr12 65802934 65803562 + 0.5 NA intron (NR_026825, intron 1 of 1) LTR16A2|LTR|ERVL -21212 NM_003484 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 152.5-63 chr21 26643839 26644349 + 0.5 NA Intergenic L1PREC2|LINE|L1 -70808 NR_135472 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 235 chr1 204605318 204606082 + 0.5 NA Intergenic Intergenic 80038 NM_201630 10446 Hs.26312 NM_006338 ENSG00000170382 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 226.5-2 chr1 67057097 67057613 + 0.5 NA Intergenic L1ME3G|LINE|L1 -3207 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 164.5-96 chr8 98567472 98567976 + 0.5 NA intron (NM_006281, intron 8 of 10) intron (NM_006281, intron 8 of 10) 140766 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 168.25-17 chr13 85533848 85534505 + 0.5 NA intron (NR_046989, intron 2 of 3) intron (NR_046989, intron 2 of 3) 170573 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 162.75-34 chr18 11005888 11006329 + 0.5 NA intron (NM_022068, intron 2 of 51) L2a|LINE|L2 142654 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 151.5-8 chr1 197007251 197007738 + 0.5 NA intron (NM_030787, intron 9 of 9) L1ME4b|LINE|L1 29957 NM_030787 81494 Hs.282594 NM_030787 ENSG00000134389 CFHR5 CFHL5|CFHR5D|FHR-5|FHR5 complement factor H related 5 protein-coding 199.25-50 chr4 171472829 171473439 + 0.5 NA Intergenic Intergenic 165629 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 172-14 chr11 10536927 10537447 + 0.5 NA intron (NM_016422, intron 1 of 5) L3|LINE|CR1 4000 NM_016422 50862 Hs.44685 NM_016422 ENSG00000110315 RNF141 RFP141|ZFP26|ZNF230 ring finger protein 141 protein-coding 155.25-22 chr12 114087754 114088353 + 0.5 NA Intergenic Intergenic -121728 NM_001146699 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 184-23 chr19 44537420 44538120 + 0.5 NA non-coding (NR_027754, exon 8 of 8) non-coding (NR_027754, exon 8 of 8) -8095 NM_001102599 125931 Hs.689632 NM_198444 ENSG00000273777 CEACAM20 UNQ9366 carcinoembryonic antigen related cell adhesion molecule 20 protein-coding 147.75-96 chr6 67501168 67501602 + 0.5 NA Intergenic Intergenic -553966 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 164.25-70 chr4 100038049 100038634 + 0.5 NA TTS (NR_125923) TTS (NR_125923) 87847 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 203.75-5 chr14 70154331 70154996 + 0.5 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -32445 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 172.5-9 chr10 110566967 110567613 + 0.5 NA promoter-TSS (NM_005445) promoter-TSS (NM_005445) -401 NM_005445 9126 Hs.24485 NM_005445 ENSG00000108055 SMC3 BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1 structural maintenance of chromosomes 3 protein-coding 239.75-14 chr19 36415849 36416453 + 0.5 NA intron (NM_001321917, intron 1 of 4) intron (NM_001321917, intron 1 of 4) 2493 NM_133466 284406 Hs.558734 NM_133466 ENSG00000181007 ZFP82 ZNF545 ZFP82 zinc finger protein protein-coding 247.75-4 chr12 17257563 17258396 + 0.5 NA Intergenic Intergenic 269232 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 157.75-6 chr1 119307676 119308136 + 0.5 NA Intergenic Intergenic -20346 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 251.25-4 chr10 53476246 53476819 + 0.5 NA Intergenic MER4B|LTR|ERV1 -704832 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 196.5-40 chr5 15232048 15232600 + 0.5 NA intron (NR_109944, intron 2 of 2) intron (NR_109944, intron 2 of 2) 34236 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 186-31 chr4 39503536 39503948 + 0.5 NA intron (NM_003359, intron 11 of 11) intron (NM_003359, intron 11 of 11) 23487 NR_026854 401127 Hs.383197 NR_026854 ENSG00000224097 LOC401127 - WD repeat domain 5 pseudogene pseudo 151.75-79 chr5 116557525 116558042 + 0.5 NA intron (NM_001300780, intron 1 of 19) intron (NM_001300780, intron 1 of 19) -16635 NR_147170 105379132 NR_147170 SEMA6A-AS2 - SEMA6A antisense RNA 2 ncRNA 175.5-5 chr10 8379943 8380445 + 0.5 NA Intergenic Intergenic -111889 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 155.5-59 chr22 19283796 19284121 + 0.5 NA intron (NM_007098, intron 1 of 32) AluSz|SINE|Alu 7761 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 251-5 chr17 40780484 40781477 + 0.5 NA intron (NM_181537, intron 2 of 7) intron (NM_181537, intron 2 of 7) 1570 NM_181537 342574 Hs.59363 NM_181537 ENSG00000171446 KRT27 K25IRS3|KRT25C keratin 27 protein-coding 161.75-99 chr9 27657336 27657958 + 0.5 NA Intergenic Intergenic -83781 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 152.25-13 chr10 22040363 22040766 + 0.5 NA Intergenic Intergenic -36834 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 154.75-42 chr2 62328951 62329315 + 0.5 NA Intergenic MER34C_|LTR|ERV1 113612 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 193.5-65 chr6 44869763 44870311 + 0.5 NA intron (NM_181356, intron 12 of 12) intron (NM_181356, intron 12 of 12) -318156 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 148.75-58 chr21 27339644 27339999 + 0.5 NA Intergenic Intergenic -372733 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 161-95 chrX 70581440 70581860 + 0.5 NA intron (NM_001003811, intron 26 of 30) LTR37-int|LTR|ERV1 -125656 NR_109801 100873930 Hs.571699 NR_046586 ENSG00000231651 DLG3-AS1 - DLG3 antisense RNA 1 ncRNA 155-11 chr10 77483552 77484120 + 0.5 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 132964 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 208.5-3 chr1 199467242 199467930 + 0.5 NA Intergenic Intergenic 318988 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 252-2 chr1 114678258 114679047 + 0.5 NA intron (NM_001172626, intron 6 of 14) intron (NM_001172626, intron 6 of 14) -8603 NM_198459 163259 Hs.654928 NM_198459 ENSG00000175984 DENND2C dJ1156J9.1 DENN domain containing 2C protein-coding 216.5-38 chr7 46084364 46085173 + 0.5 NA Intergenic L1M4|LINE|L1 -163496 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 166.75-32 chr16 61179498 61179889 + 0.5 NA Intergenic Intergenic -123927 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 184.75-63 chr5 23559866 23560570 + 0.5 NA Intergenic Intergenic 52563 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 167-87 chr8 81913664 81914112 + 0.5 NA Intergenic Intergenic -71602 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 164.25-21 chr11 76873349 76873851 + 0.5 NA intron (NM_001300953, intron 1 of 9) intron (NM_001300953, intron 1 of 9) 12682 NM_018367 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 221.5-13 chr12 55411811 55412669 + 0.5 NA Intergenic Intergenic 11711 NM_001005518 403282 Hs.554553 NM_001005518 ENSG00000205328 OR6C65 - olfactory receptor family 6 subfamily C member 65 protein-coding 163.75-77 chr9 136377485 136377923 + 0.5 NA exon (NM_003086, exon 21 of 23) exon (NM_003086, exon 21 of 23) -4023 NM_052813 64170 Hs.694071 NM_052813 ENSG00000187796 CARD9 CANDF2|hCARD9 caspase recruitment domain family member 9 protein-coding 160 chr1 66574029 66574517 + 0.5 NA intron (NM_001350218, intron 1 of 22) MLT1J2|LTR|ERVL-MaLR 40120 NM_001350218 84251 Hs.132121 NM_032291 ENSG00000118473 SGIP1 - SH3 domain GRB2 like endophilin interacting protein 1 protein-coding 182.25-62 chr8 82039939 82040486 + 0.5 NA Intergenic Intergenic -197926 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 164-16 chr12 61837396 61837779 + 0.5 NA intron (NM_178539, intron 2 of 4) intron (NM_178539, intron 2 of 4) 355252 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 145.75-131 chr9 80951165 80951591 + 0.5 NA Intergenic Intergenic 738157 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 153.75-85 chr8 70703645 70703994 + 0.5 NA intron (NM_001287258, intron 4 of 5) intron (NM_001287258, intron 4 of 5) 34480 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 168.25-20 chr14 73986135 73986801 + 0.5 NA intron (NM_001249, intron 5 of 15) intron (NM_001249, intron 5 of 15) 32820 NM_001321985 957 Hs.655070 NM_001249 ENSG00000187097 ENTPD5 CD39L4|NTPDase-5|PCPH ectonucleoside triphosphate diphosphohydrolase 5 (inactive) protein-coding 151-52 chr21 20950338 20950921 + 0.5 NA Intergenic Intergenic -47780 NM_001352596 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 191.25-33 chr17 12953840 12954592 + 0.5 NA intron (NM_001321164, intron 13 of 20) L1MB3|LINE|L1 -36874 NR_039747 100616494 NR_039747 ENSG00000265503 MIR1269B - microRNA 1269b ncRNA 156.75-40 chr16 73655371 73655911 + 0.5 NA Intergenic L1ME3B|LINE|L1 268836 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 250-14 chr8 60585982 60586615 + 0.5 NA intron (NM_002865, intron 5 of 7) AluJr|SINE|Alu 69311 NM_002865 5862 Hs.369017 NM_002865 ENSG00000104388 RAB2A LHX|RAB2 RAB2A, member RAS oncogene family protein-coding 147-52 chr2 160485469 160485959 + 0.5 NA intron (NM_002897, intron 1 of 13) intron (NM_002897, intron 1 of 13) 8093 NM_002897 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 191-20 chr13 24178871 24179521 + 0.5 NA intron (NM_153023, intron 1 of 11) L1MB8|LINE|L1 16780 NR_031753 100313842 NR_031753 ENSG00000252695 MIR2276 - microRNA 2276 ncRNA 180-75 chr9 88045185 88045881 + 0.5 NA Intergenic AluSq|SINE|Alu 32367 NR_135137 102724156 Hs.633031 NR_135137 LOC102724156 - uncharacterized LOC102724156 ncRNA 172.25-23 chr14 44659017 44659527 + 0.5 NA Intergenic Intergenic 139854 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 161-29 chr14 42843084 42843476 + 0.5 NA Intergenic L1MA1|LINE|L1 1236424 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 156.5-59 chr20 20085389 20085899 + 0.5 NA intron (NM_015585, intron 6 of 26) intron (NM_015585, intron 6 of 26) 28998 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 153-66 chr4 85230388 85230949 + 0.5 NA Intergenic Intergenic -244482 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 245.5-29 chr5 103394251 103394908 + 0.5 NA Intergenic Intergenic 135155 NM_001316968 90355 Hs.482976 NM_033211 ENSG00000181751 C5orf30 - chromosome 5 open reading frame 30 protein-coding 168.25-81 chr9 78900087 78900614 + 0.5 NA Intergenic Intergenic 245316 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 154.25-79 chr7 92204164 92204695 + 0.5 NA promoter-TSS (NR_031616) promoter-TSS (NR_031616) -331 NR_031616 100302218 NR_031616 ENSG00000221520 MIR1285-1 MIRN1285-1|hsa-mir-1285-1 microRNA 1285-1 ncRNA 193.25-21 chr14 62087614 62088173 + 0.5 NA intron (NM_001367661, intron 8 of 8) intron (NM_001367661, intron 8 of 8) -29464 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 170.5-32 chr2 569735 570188 + 0.5 NA Intergenic Intergenic 11760 NR_136169 105373352 NR_136168 LOC105373352 - uncharacterized LOC105373352 ncRNA 155.25-85 chr8 25434610 25435092 + 0.5 NA intron (NM_017634, intron 9 of 11) (TATA)n|Simple_repeat|Simple_repeat -9811 NM_000825 2796 Hs.82963 NM_000825 ENSG00000147437 GNRH1 GNRH|GRH|LHRH|LNRH gonadotropin releasing hormone 1 protein-coding 205.75-23 chr14 81393280 81393985 + 0.5 NA intron (NM_001366850, intron 4 of 7) MIR|SINE|MIR 34143 NM_001256430 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 168.75-16 chr11 14945003 14945673 + 0.5 NA Intergenic Intergenic 26948 NM_001033953 796 Hs.37058 NM_001741 ENSG00000110680 CALCA CALC1|CGRP|CGRP-I|CGRP1|CT|KC|PCT calcitonin related polypeptide alpha protein-coding 241.25-19 chr4 70382828 70383504 + 0.5 NA promoter-TSS (NM_006685) promoter-TSS (NM_006685) 35 NM_006685 10879 Hs.650650 NM_006685 ENSG00000171201 SMR3B P-B|PBII|PRL3|PROL3|SMR1B submaxillary gland androgen regulated protein 3B protein-coding 221.5-34 chr3 36510980 36511751 + 0.5 NA intron (NM_001292049, intron 6 of 8) intron (NM_001292049, intron 6 of 8) 130878 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 190-56 chr5 148729474 148730126 + 0.5 NA Intergenic Intergenic -75273 NM_000870 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 167-50 chr21 29532791 29533364 + 0.5 NA Intergenic Intergenic 37030 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 217.75-25 chr20 38879659 38880203 + 0.5 NA intron (NM_015568, intron 2 of 10) intron (NM_015568, intron 2 of 10) -46486 NM_030919 81610 Hs.726442 NM_030919 ENSG00000101447 FAM83D C20orf129|CHICA|dJ616B8.3 family with sequence similarity 83 member D protein-coding 184.5-74 chrX 102613916 102614388 + 0.5 NA intron (NR_146584, intron 4 of 18) Tigger4a|DNA|TcMar-Tigger 14637 NM_001350268 100528062 Hs.522729 NM_001199818 ENSG00000286237 ARMCX5-GPRASP2 ARMCX5-GPRASP2-BHLHB9-LINC00630|bHLHb9|p60TRP ARMCX5-GPRASP2 readthrough protein-coding 164.5-12 chr12 9694666 9695136 + 0.5 NA non-coding (NR_036693, exon 4 of 4) non-coding (NR_036693, exon 4 of 4) 25188 NR_036693 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 167.75-105 chrX 102024920 102025342 + 0.5 NA Intergenic L1M3c|LINE|L1 -93104 NM_001282400 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 164-55 chr4 44321104 44321602 + 0.5 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 127456 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 147-116 chr8 141106814 141107246 + 0.5 NA Intergenic L1MB5|LINE|L1 -21559 NM_001352890 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 185.25-4 chr1 95089163 95089744 + 0.5 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -3064 NM_001199679 148534 Hs.483512 NM_152487 ENSG00000152078 TLCD4 TMEM56 TLC domain containing 4 protein-coding 177.75-77 chr9 83133209 83133840 + 0.5 NA Intergenic Intergenic -70382 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 195-10 chr10 65703604 65704112 + 0.5 NA intron (NR_120647, intron 4 of 5) L1M5|LINE|L1 132433 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 189.75-5 chr1 80568634 80569374 + 0.5 NA intron (NR_125940, intron 2 of 3) intron (NR_125940, intron 2 of 3) 33249 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 216-11 chr11 84807517 84808218 + 0.5 NA intron (NM_001351274, intron 5 of 26) L1MD1|LINE|L1 -86925 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 165.5-73 chr5 160444647 160445223 + 0.5 NA Intergenic L1MA5|LINE|L1 23025 NM_001282383 9232 Hs.350966 NM_004219 ENSG00000164611 PTTG1 EAP1|HPTTG|PTTG|TUTR1 PTTG1 regulator of sister chromatid separation, securin protein-coding 150.5-66 chr2 197961083 197961609 + 0.5 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 156753 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 199-18 chr2 123584668 123585203 + 0.5 NA Intergenic MLT1E|LTR|ERVL-MaLR 440239 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 210.25-37 chr7 28396540 28397071 + 0.5 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) -15713 NM_182898 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 194-52 chr7 26038944 26039641 + 0.5 NA Intergenic Intergenic -89306 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 148.75-63 chr3 107934468 107934990 + 0.5 NA Intergenic L1MEg|LINE|L1 51524 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 196.75-31 chr3 32177535 32178118 + 0.5 NA Intergenic Intergenic -60853 NM_001320308 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 176.25-37 chr2 56859487 56859945 + 0.5 NA Intergenic L1PA15|LINE|L1 -673946 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 154-98 chr7 41870075 41870549 + 0.5 NA Intergenic Intergenic -167222 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 208.25-34 chr7 85885166 85885802 + 0.5 NA Intergenic Intergenic 464362 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 185-29 chr18 4397134 4397585 + 0.5 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 57907 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 168.25-14 chr12 119371860 119372424 + 0.5 NA intron (NM_178499, intron 1 of 13) AluSz|SINE|Alu 37413 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 203.5-58 chr5 111441466 111442195 + 0.5 NA intron (NM_001744, intron 5 of 10) intron (NM_001744, intron 5 of 10) -70396 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 147-72 chr3 174775996 174776451 + 0.5 NA Intergenic Intergenic -83111 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 156-2 chr1 24251875 24252293 + 0.5 NA Intergenic MIR|SINE|MIR 51844 NR_027087 284632 Hs.638906 NR_027087 ENSG00000230023 LINC02800 - long intergenic non-protein coding RNA 2800 ncRNA 190.25-16 chr2 58952218 58952827 + 0.5 NA intron (NR_033873, intron 6 of 13) intron (NR_033873, intron 6 of 13) -265186 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 172.25-45 chr3 163195693 163196192 + 0.5 NA intron (NR_033945, intron 4 of 6) intron (NR_033945, intron 4 of 6) 107359 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 223-3 chr10 53298867 53299417 + 0.5 NA Intergenic L1MA9|LINE|L1 -527442 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 197.25-9 chr10 32952075 32952590 + 0.5 NA intron (NM_002211, intron 1 of 15) intron (NM_002211, intron 1 of 15) 5562 NM_133376 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 154-7 chr1 114213085 114213669 + 0.5 NA Intergenic Intergenic -59508 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 173-15 chr10 103091660 103092302 + 0.5 NA intron (NM_001351194, intron 14 of 17) MIRc|SINE|MIR 61840 NM_001351191 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 199.25-68 chr8 104531223 104531822 + 0.5 NA intron (NM_001135703, intron 1 of 5) intron (NM_001135703, intron 1 of 5) -47057 NR_030330 693127 NR_030330 ENSG00000208032 MIR548A3 MIRN548A3 microRNA 548a-3 ncRNA 174.75-62 chr7 79033067 79033456 + 0.5 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 24273 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 157.5-9 chr10 63620797 63621330 + 0.5 NA 3' UTR (NM_001001330, exon 8 of 8) 3' UTR (NM_001001330, exon 8 of 8) -99173 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 186-34 chr4 71872688 71873388 + 0.5 NA Intergenic Intergenic -67518 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 164-75 chr7 10437719 10438223 + 0.5 NA Intergenic Arthur1|DNA|hAT-Tip100 -264705 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 163.5-78 chr3 155063079 155063535 + 0.5 NA intron (NM_001354642, intron 1 of 22) (TA)n|Simple_repeat|Simple_repeat -16365 NM_000902 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 183-12 chr12 20812132 20812510 + 0.5 NA intron (NM_019844, intron 1 of 15) intron (NM_019844, intron 1 of 15) 1616 NM_019844 28234 Hs.504966 NM_019844 ENSG00000111700 SLCO1B3 HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 solute carrier organic anion transporter family member 1B3 protein-coding 174.5-72 chr6 133226080 133226741 + 0.5 NA Intergenic Intergenic -14947 NM_004100 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 182-45 chr5 24733610 24734164 + 0.5 NA Intergenic Intergenic -88909 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 173-55 chr4 44306114 44306750 + 0.5 NA intron (NM_198353, intron 1 of 1) MIRb|SINE|MIR 142377 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 187.25-47 chr4 157355577 157356207 + 0.5 NA intron (NM_001083620, intron 12 of 15) (ATAT)n|Simple_repeat|Simple_repeat 135164 NM_000826 2891 Hs.32763 NM_000826 ENSG00000120251 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding 155.25-66 chr4 56503319 56503806 + 0.5 NA non-coding (NR_151856, exon 20 of 20) non-coding (NR_151856, exon 20 of 20) -1647 NM_206919 132946 Hs.444449 NM_206919 ENSG00000196503 ARL9 - ADP ribosylation factor like GTPase 9 protein-coding 202.25-38 chr3 47782090 47782654 + 0.5 NA promoter-TSS (NM_003074) promoter-TSS (NM_003074) -479 NM_003074 6599 Hs.476179 NM_003074 ENSG00000173473 SMARCC1 BAF155|CRACC1|Rsc8|SRG3|SWI3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 protein-coding 155-87 chr6 64001802 64002330 + 0.5 NA intron (NM_001292009, intron 33 of 43) LTR1B1|LTR|ERV1 195230 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 186.25-17 chr17 35711809 35712330 + 0.5 NA intron (NM_001030006, intron 20 of 21) intron (NM_001030006, intron 20 of 21) -19570 NM_033315 91608 Hs.744994 NM_033315 ENSG00000270885 RASL10B RRP17|VTS58635 RAS like family 10 member B protein-coding 168.25-22 chr14 86307922 86308443 + 0.5 NA Intergenic L1MEh|LINE|L1 373504 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 159-64 chr4 141813370 141813972 + 0.5 NA Intergenic Intergenic 177088 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 175.25-2 chr1 69901294 69901772 + 0.5 NA intron (NM_001370785, intron 7 of 26) intron (NM_001370785, intron 7 of 26) -17789 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 166-36 chr2 19484072 19484671 + 0.5 NA Intergenic L1MA10|LINE|L1 -125748 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 186.5-17 chr13 81019542 81020281 + 0.5 NA intron (NR_125770, intron 1 of 3) intron (NR_125770, intron 1 of 3) 1520 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 270.75-15 chr20 58678936 58680013 + 0.5 NA TTS (NM_001134773) TTS (NM_001134773) -9657 NM_001204873 79716 Hs.654868 NM_024663 ENSG00000215440 NPEPL1 bA261P9.2 aminopeptidase like 1 protein-coding 183.25-25 chr15 33084932 33085472 + 0.5 NA intron (NM_001277313, intron 5 of 20) L1PB1|LINE|L1 -17028 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 149-95 chr7 110428001 110428428 + 0.5 NA Intergenic L1ME1|LINE|L1 -468001 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 177.5-15 chr13 86667383 86667953 + 0.5 NA Intergenic Intergenic -244252 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 177.5-48 chr6 153354429 153354994 + 0.5 NA Intergenic MER61-int|LTR|ERV1 -223429 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 157.75-64 chr3 69078831 69079425 + 0.5 NA intron (NM_001363861, intron 1 of 15) MIRb|SINE|MIR 1237 NM_198195 9039 Hs.154320 NM_003968 ENSG00000144744 UBA3 NAE2|UBE1C|hUBA3 ubiquitin like modifier activating enzyme 3 protein-coding 163-59 chr4 65474110 65474705 + 0.5 NA intron (NM_001281767, intron 5 of 16) intron (NM_001281767, intron 5 of 16) 195081 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 147.25-68 chr4 136028208 136028743 + 0.5 NA Intergenic Intergenic -114795 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 158.75-79 chr7 126485724 126486326 + 0.5 NA intron (NM_001371085, intron 9 of 10) MER49|LTR|ERV1 572159 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 214.75-12 chr10 61837187 61837957 + 0.5 NA Intergenic Intergenic -64127 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 184.25-52 chr4 180830465 180830900 + 0.5 NA Intergenic MIR|SINE|MIR 328467 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 149.75-17 chr11 91903103 91903689 + 0.5 NA Intergenic MIR|SINE|MIR -321638 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 150.75-82 chr6 64071881 64072356 + 0.5 NA intron (NM_001292009, intron 32 of 43) HAL1b|LINE|L1 265282 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 147.5-39 chr2 52672246 52672574 + 0.5 NA Intergenic MER67D|LTR|ERV1 30205 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 189.75-15 chr1 215035191 215035783 + 0.5 NA intron (NM_001017424, intron 1 of 6) L1MC3|LINE|L1 29945 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 185.75-58 chr4 154255108 154255555 + 0.5 NA intron (NM_001358235, intron 16 of 19) MIR3|SINE|MIR 236468 NM_001358235 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 206.75-7 chr1 191649110 191649616 + 0.5 NA Intergenic MIR|SINE|MIR -420865 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 160.25-43 chr3 1138292 1138854 + 0.5 NA intron (NM_001349350, intron 3 of 24) intron (NM_001349350, intron 3 of 24) 45549 NM_001349350 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 248.75-18 chr6 95414560 95415436 + 0.5 NA Intergenic Intergenic 162453 NR_104136 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 189.75-23 chr12 81051297 81051816 + 0.5 NA Intergenic LTR106_Mam|LTR|LTR -26523 NM_001330242 79611 Hs.259559 NM_024560 ENSG00000111058 ACSS3 - acyl-CoA synthetase short chain family member 3 protein-coding 151.5-27 chr14 76022156 76022671 + 0.5 NA intron (NR_045664, intron 3 of 7) intron (NR_045664, intron 3 of 7) 36650 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 218.25-11 chr12 89949783 89950594 + 0.5 NA TTS (NR_135019) TTS (NR_135019) 2495 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 160-47 chr20 12336137 12336719 + 0.5 NA Intergenic MIRb|SINE|MIR 418535 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 174-32 chr2 205348605 205349115 + 0.5 NA intron (NM_205863, intron 18 of 21) intron (NM_205863, intron 18 of 21) -333640 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 200.25-28 chr18 37767409 37768036 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 110587 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 150.25-48 chr2 35797989 35798422 + 0.5 NA Intergenic Intergenic 326800 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 191.75-42 chr4 35406134 35406793 + 0.5 NA Intergenic Intergenic 837476 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 155.25-17 chr11 80938407 80938911 + 0.5 NA Intergenic L1MB3|LINE|L1 -175856 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 190-3 chr1 162664044 162664723 + 0.5 NA intron (NM_006182, intron 2 of 17) L1ME4a|LINE|L1 31919 NM_001014796 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10|WRCN discoidin domain receptor tyrosine kinase 2 protein-coding 158.5-32 chr16 74246279 74246697 + 0.5 NA Intergenic HAL1|LINE|L1 -30967 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 146.75-80 chr4 56623461 56623989 + 0.5 NA Intergenic THE1A|LTR|ERVL-MaLR 32797 NM_139211 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 213.75-41 chr8 123332206 123332985 + 0.5 NA intron (NM_014109, intron 24 of 27) L1ME3A|LINE|L1 -15439 NR_037516 100500863 NR_037516 ENSG00000207704 MIR548AA1 - microRNA 548aa-1 ncRNA 255.5-12 chr17 51389528 51390341 + 0.5 NA Intergenic Intergenic -45493 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 160-38 chr2 26335294 26335799 + 0.5 NA intron (NR_135916, intron 1 of 12) L1MB7|LINE|L1 10265 NM_001321975 165082 Hs.631878 NM_153835 ENSG00000173567 ADGRF3 GPR113|PGR23 adhesion G protein-coupled receptor F3 protein-coding 156.25-15 chr11 116444001 116444461 + 0.5 NA Intergenic MER44C|DNA|TcMar-Tigger -195191 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 302.25 chr1 58038450 58039384 + 0.5 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 178336 NR_104364 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 204-33 chr4 58975259 58975933 + 0.5 NA Intergenic Intergenic -8686 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 219.75-15 chr15 48413498 48414169 + 0.5 NA intron (NM_000138, intron 64 of 65) intron (NM_000138, intron 64 of 65) 81636 NM_001948 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 160.25-17 chr12 40522603 40523062 + 0.5 NA intron (NM_173600, intron 102 of 173) intron (NM_173600, intron 102 of 173) 129438 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 154-54 chr2 79485563 79486034 + 0.5 NA Intergenic Intergenic 15046 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 185.75-36 chr2 34686009 34686416 + 0.5 NA intron (NR_126404, intron 1 of 2) MLT2B2|LTR|ERVL 8655 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 146-59 chr4 60681382 60681826 + 0.5 NA Intergenic Intergenic -241015 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 169.5-13 chr10 74635855 74636396 + 0.5 NA intron (NM_001369124, intron 8 of 9) intron (NM_001369124, intron 8 of 9) -106801 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 153.75-43 chr3 69233660 69234084 + 0.5 NA intron (NM_015123, intron 7 of 22) intron (NM_015123, intron 7 of 22) -111277 NM_198271 56203 Hs.350621 NM_198271 ENSG00000163380 LMOD3 NEM10 leiomodin 3 protein-coding 218.5-3 chr1 82871737 82872367 + 0.5 NA Intergenic Intergenic -31131 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 199.25-28 chr18 8201380 8201857 + 0.5 NA intron (NM_002845, intron 14 of 30) MLT1A|LTR|ERVL-MaLR 165416 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 171.5-75 chr4 138653064 138653716 + 0.5 NA Intergenic L1MB7|LINE|L1 343679 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 187-59 chr8 128407408 128408082 + 0.5 NA intron (NR_121672, intron 6 of 7) intron (NR_121672, intron 6 of 7) 156934 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 149.5-62 chr3 105360077 105360541 + 0.5 NA Intergenic Intergenic -6404 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 172.75-3 chr1 95607293 95607914 + 0.5 NA Intergenic Intergenic 97487 NR_110622 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 164-46 chr3 22821886 22822410 + 0.5 NA Intergenic Intergenic 380430 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 170.25-44 chr3 86367701 86368163 + 0.5 NA Intergenic Intergenic -114011 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 221.75-36 chr9 79379683 79380503 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -191680 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 206.5-4 chr1 224211819 224212505 + 0.5 NA intron (NR_110669, intron 1 of 1) AluSz|SINE|Alu 1117 NR_110669 101927143 Hs.638720 NR_110669 ENSG00000232628 LOC101927143 - uncharacterized LOC101927143 ncRNA 149.25-97 chr7 20563669 20564055 + 0.5 NA Intergenic Intergenic -51805 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 193.5-38 chr2 64115406 64115963 + 0.5 NA intron (NM_020651, intron 1 of 6) MIRb|SINE|MIR 28736 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 175.75-69 chr9 85713579 85714002 + 0.5 NA intron (NM_015239, intron 1 of 25) intron (NM_015239, intron 1 of 25) 28239 NM_015239 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 212.5-5 chr10 34629578 34630174 + 0.5 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 185420 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 162.25-31 chr2 67526009 67526517 + 0.5 NA Intergenic Intergenic 128930 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 162.25-98 chr8 91976358 91976745 + 0.5 NA intron (NM_004349, intron 8 of 10) intron (NM_004349, intron 8 of 10) 41129 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 192.75-13 chr11 86094378 86094888 + 0.5 NA Intergenic Zaphod|DNA|hAT-Tip100 -24773 NM_001206947 8301 Hs.163893 NM_007166 ENSG00000073921 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 145.75-37 chr17 12499844 12500332 + 0.5 NA Intergenic AluJr|SINE|Alu -49880 NR_034145 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 151.75-102 chr7 142015287 142015772 + 0.5 NA intron (NM_004668, intron 3 of 47) intron (NM_004668, intron 3 of 47) 19650 NM_004668 8972 Hs.122785 NM_004668 ENSG00000257335 MGAM MG|MGA maltase-glucoamylase protein-coding 157.75-48 chr2 14138086 14138633 + 0.5 NA Intergenic L1MEj|LINE|L1 262599 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 200-41 chr7 38639401 38640001 + 0.5 NA Intergenic L1MB3|LINE|L1 -8134 NM_139316 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 147.25-25 chr12 3076479 3077051 + 0.5 NA promoter-TSS (NM_006675) promoter-TSS (NM_006675) -590 NM_001168320 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 165-36 chr19 45862540 45863137 + 0.5 NA intron (NM_004819, intron 1 of 26) L2b|LINE|L2 309 NM_004819 8189 Hs.515475 NM_004819 ENSG00000125755 SYMPK SPK|SYM symplekin protein-coding 166-69 chr7 49417312 49417809 + 0.5 NA Intergenic L3|LINE|CR1 -356078 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 158.5-64 chr3 2299444 2299891 + 0.5 NA intron (NM_001206955, intron 1 of 23) intron (NM_001206955, intron 1 of 23) 60838 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 205.5-22 chr2 176958927 176959666 + 0.5 NA Intergenic Intergenic 253115 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 167.5-30 chr16 84319640 84320115 + 0.5 NA intron (NM_001282467, intron 4 of 6) MIR|SINE|MIR 24999 NM_021197 58189 Hs.36688 NM_021197 ENSG00000103175 WFDC1 PS20 WAP four-disulfide core domain 1 protein-coding 163.5-2 chr1 10511493 10511874 + 0.5 NA intron (NM_004565, intron 2 of 8) intron (NM_004565, intron 2 of 8) 36733 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 157.5-114 chr9 72201141 72201500 + 0.5 NA intron (NM_001242506, intron 3 of 14) MIRb|SINE|MIR 51880 NM_001351571 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 160-85 chr8 103879657 103880227 + 0.5 NA intron (NR_145711, intron 1 of 21) intron (NR_145711, intron 1 of 21) 60722 NM_001348509 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 157.25-7 chr10 8462647 8463145 + 0.5 NA Intergenic L2a|LINE|L2 131495 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 188-40 chr3 58690611 58691135 + 0.5 NA Intergenic MER124|DNA?|DNA? -24099 NM_138805 131177 Hs.61265 NM_138805 ENSG00000198643 FAM3D EF7|OIT1 family with sequence similarity 3 member D protein-coding 193-54 chr8 120706042 120706780 + 0.5 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -54842 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 171.25-54 chr6 167771513 167772135 + 0.5 NA Intergenic Intergenic -23705 NR_149041 441179 Hs.192711 NR_149041 ENSG00000269155 LOC441179 - uncharacterized LOC441179 ncRNA 163.5-66 chr21 17044532 17044905 + 0.5 NA Intergenic Intergenic -394172 NR_037585 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 181-53 chr8 124279350 124279983 + 0.5 NA Intergenic AluJb|SINE|Alu -32268 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 162.25-39 chr2 191234443 191235032 + 0.5 NA Intergenic Intergenic -10667 NM_001161819 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 170-25 chr17 81353460 81353808 + 0.5 NA Intergenic AluSz|SINE|Alu 31491 NM_001347841 100130370 Hs.646594 NM_001272086 LOC100130370 - uncharacterized LOC100130370 protein-coding 182.5-76 chr8 14134152 14134613 + 0.5 NA intron (NM_001322880, intron 4 of 6) Arthur1|DNA|hAT-Tip100 504692 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 178.5-30 chr15 63401313 63401777 + 0.5 NA intron (NR_120375, intron 4 of 6) intron (NR_120375, intron 4 of 6) 11315 NR_120375 102723344 Hs.569500 NR_120375 LINC02568 - long intergenic non-protein coding RNA 2568 ncRNA 183.5-28 chr2 48691555 48691984 + 0.5 NA intron (NM_000233, intron 10 of 10) AluSx|SINE|Alu 63955 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 151.25-7 chr10 26758178 26758654 + 0.5 NA intron (NM_001178122, intron 7 of 9) intron (NM_001178122, intron 7 of 9) 60715 NM_014317 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 162.25-83 chr7 18497935 18498326 + 0.5 NA intron (NM_058176, intron 1 of 22) intron (NM_058176, intron 1 of 22) 1868 NM_178425 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 240-5 chr11 127984461 127985241 + 0.5 NA Intergenic Intergenic -223915 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 182.5-18 chr14 55152619 55153230 + 0.5 NA intron (NM_001146015, intron 15 of 19) intron (NM_001146015, intron 15 of 19) 15941 NR_003225 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 175.25-5 chr10 72378207 72378709 + 0.5 NA intron (NM_001195519, intron 5 of 6) MSTA|LTR|ERVL-MaLR -23539 NM_001365080 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 200-39 chr6 48383326 48383860 + 0.5 NA Intergenic L1PB3|LINE|L1 -314904 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 219.25-47 chr8 94523385 94523879 + 0.5 NA intron (NM_015496, intron 8 of 23) AluJr|SINE|Alu 29837 NM_015496 25962 Hs.202238 NM_015496 ENSG00000164944 VIRMA KIAA1429|MSTP054|fSAP121 vir like m6A methyltransferase associated protein-coding 181-35 chr5 68988551 68989182 + 0.5 NA intron (NR_130778, intron 1 of 3) MIR3|SINE|MIR 41061 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 214-32 chr6 142427639 142428266 + 0.5 NA intron (NM_198569, intron 22 of 24) THE1B|LTR|ERVL-MaLR 125945 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 164.75-19 chr14 37956905 37957437 + 0.5 NA Intergenic Intergenic -55047 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 151.75-19 chr11 106009257 106009788 + 0.5 NA 3' UTR (NM_032424, exon 3 of 3) 3' UTR (NM_032424, exon 3 of 3) 12718 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 172-47 chr3 2058519 2059159 + 0.5 NA Intergenic Intergenic -39964 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 158.75-9 chr11 10775752 10776361 + 0.5 NA intron (NM_014633, intron 24 of 24) intron (NM_014633, intron 24 of 24) 24810 NM_014633 9646 Hs.725151 NM_014633 ENSG00000198730 CTR9 SH2BP1|TSBP|p150|p150TSP CTR9 homolog, Paf1/RNA polymerase II complex component protein-coding 149.25-19 chr12 42164381 42164848 + 0.5 NA intron (NM_001190977, intron 1 of 2) intron (NM_001190977, intron 1 of 2) -19740 NM_173601 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 146.75-35 chr16 59628866 59629294 + 0.5 NA Intergenic Intergenic 126111 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 146-62 chr4 101010779 101011267 + 0.5 NA Intergenic Intergenic 229849 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 167.75-77 chr6 56147664 56148069 + 0.5 NA intron (NR_134849, intron 10 of 29) intron (NR_134849, intron 10 of 29) -56204 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 226.25-5 chr11 132734678 132735451 + 0.5 NA intron (NM_001319104, intron 1 of 6) MLT1F-int|LTR|ERVL-MaLR 208573 NM_002545 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 145.75-128 chr8 113688009 113688547 + 0.5 NA Intergenic Intergenic -251339 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 180.25-4 chr1 112434133 112434829 + 0.5 NA intron (NM_018704, intron 3 of 5) L2c|LINE|L2 27352 NR_036210 100422976 NR_036210 ENSG00000283296 MIR4256 - microRNA 4256 ncRNA 188 chr1 6823622 6824170 + 0.5 NA intron (NM_001195563, intron 2 of 3) intron (NM_001195563, intron 2 of 3) 38442 NR_146203 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 172.5-78 chr7 144431634 144432036 + 0.5 NA Intergenic Intergenic -21608 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 193.5-61 chr5 95124741 95125384 + 0.5 NA intron (NM_024717, intron 1 of 22) intron (NM_024717, intron 1 of 22) -43196 NM_001002796 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 174.25-43 chr3 86701991 86702655 + 0.5 NA Intergenic Intergenic 220380 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 177.25-17 chr12 76126446 76127087 + 0.5 NA Intergenic AluSx1|SINE|Alu -42081 NM_001330231 4673 Hs.524599 NM_004537 ENSG00000187109 NAP1L1 NAP1|NAP1L|NRP nucleosome assembly protein 1 like 1 protein-coding 183.75-71 chr5 105546626 105547182 + 0.5 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat 447430 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 191.5-55 chr6 139229030 139229595 + 0.5 NA Intergenic Intergenic 62686 NM_153235 167838 Hs.535820 NM_153235 ENSG00000164440 TXLNB C6orf198|LST001|MDP77|dJ522B19.2 taxilin beta protein-coding 220.25-2 chr1 115501261 115501827 + 0.5 NA Intergenic Intergenic -140426 NM_138959 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 188.75-3 chr1 118471824 118472451 + 0.5 NA Intergenic MIR|SINE|MIR -286909 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 191.25-19 chr12 49156251 49156712 + 0.5 NA Intergenic MER21C|LTR|ERVL -25086 NM_006082 10376 Hs.524390 NM_006082 ENSG00000123416 TUBA1B K-ALPHA-1 tubulin alpha 1b protein-coding 173-87 chr8 115809972 115810345 + 0.5 NA Intergenic Intergenic -141183 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 214-28 chr4 130678653 130679438 + 0.5 NA Intergenic Intergenic 302684 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 156.25-42 chr2 106653632 106654087 + 0.5 NA Intergenic L1MEd|LINE|L1 166495 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 151-45 chr2 181723090 181723651 + 0.5 NA Intergenic Intergenic -42705 NM_002500 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 163-70 chr5 147436638 147437148 + 0.5 NA intron (NM_001197294, intron 1 of 13) intron (NM_001197294, intron 1 of 13) 16799 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 157.25-56 chr2 191820801 191821150 + 0.5 NA TTS (NR_157850) TTS (NR_157850) 26113 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 169-14 chr12 23857641 23858088 + 0.5 NA intron (NM_001330785, intron 2 of 14) AluSx1|SINE|Alu 91806 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 207-17 chr2 35157494 35158053 + 0.5 NA Intergenic L2a|LINE|L2 -313632 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 161.5-50 chr2 120164811 120165261 + 0.5 NA intron (NM_001330310, intron 22 of 24) intron (NM_001330310, intron 22 of 24) 58364 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 228.25-23 chr4 98037872 98038502 + 0.5 NA intron (NM_174952, intron 5 of 10) L1ME3Cz|LINE|L1 105289 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 156.75-71 chr5 7696797 7697366 + 0.5 NA intron (NM_020546, intron 6 of 24) MLT1C|LTR|ERVL-MaLR 154052 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 177-43 chr3 173571530 173572052 + 0.5 NA intron (NM_014932, intron 2 of 6) intron (NM_014932, intron 2 of 6) -12643 NM_001365928 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 168.25-39 chr2 170369085 170369608 + 0.5 NA non-coding (NR_045684, exon 9 of 35) non-coding (NR_045684, exon 9 of 35) -18403 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 163.25-38 chr2 43458101 43458565 + 0.5 NA intron (NM_001083953, intron 26 of 37) intron (NM_001083953, intron 26 of 37) 137641 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 283.75-8 chr3 103195145 103195938 + 0.5 NA Intergenic Intergenic 328575 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 152.25-102 chr8 114511173 114511600 + 0.5 NA Intergenic Intergenic -1074447 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 185.75-11 chr11 30124252 30124760 + 0.5 NA Intergenic Intergenic -106508 NM_001018080 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 147-54 chr2 179276263 179276689 + 0.5 NA Intergenic L1MA2|LINE|L1 -11644 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 211.25-17 chr19 35068128 35068728 + 0.5 NA intron (NR_024562, intron 3 of 3) intron (NR_024562, intron 3 of 3) 27922 NM_182983 3249 Hs.182385 NM_002151 ENSG00000105707 HPN TMPRSS1 hepsin protein-coding 175.5-77 chr5 28949782 28950315 + 0.5 NA Intergenic Intergenic 23178 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 173.5-87 chr8 80399069 80399660 + 0.5 NA Intergenic L3|LINE|CR1 -86229 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 197.75-14 chr12 124586414 124587181 + 0.5 NA Intergenic Intergenic -19185 NM_001077261 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 375-4 chr4 92368477 92369622 + 0.5 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 64650 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 171-29 chr18 73791332 73791793 + 0.5 NA Intergenic Intergenic 356272 NM_152676 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 265.75-3 chr12 63985052 63986096 + 0.5 NA intron (NM_001346201, intron 2 of 21) L1MEd|LINE|L1 140874 NM_001346201 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 167-83 chr8 34876163 34876677 + 0.5 NA Intergenic MER2|DNA|TcMar-Tigger 92499 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 171-33 chr2 153225336 153225769 + 0.5 NA Intergenic L1MCa|LINE|L1 253210 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 204-23 chr2 108537203 108537991 + 0.5 NA intron (NM_001193483, intron 1 of 9) intron (NM_001193483, intron 1 of 9) 3242 NM_001193483 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 202.75-41 chr6 156032042 156032823 + 0.5 NA Intergenic MER117|DNA|hAT-Charlie 85635 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 209.75-25 chr3 7669798 7670553 + 0.5 NA intron (NM_000844, intron 8 of 9) intron (NM_000844, intron 8 of 9) -134891 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 251.75-18 chr3 95674955 95675565 + 0.5 NA intron (NR_077228, intron 2 of 4) intron (NR_077228, intron 2 of 4) 7933 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 192.75-46 chr4 88897943 88898330 + 0.5 NA intron (NM_014883, intron 6 of 23) intron (NM_014883, intron 6 of 23) -74775 NM_001265579 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 148-60 chr22 43754849 43755421 + 0.5 NA intron (NM_198856, intron 4 of 29) intron (NM_198856, intron 4 of 29) 57170 NM_022785 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 208.25-18 chr13 105441707 105442499 + 0.5 NA Intergenic Intergenic -23764 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 177.25-45 chr3 1067126 1067729 + 0.5 NA Intergenic L1PA13|LINE|L1 -25597 NM_001349359 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 183.75-22 chr12 20693018 20693573 + 0.5 NA Intergenic L2|LINE|L2 -2060 NM_001145946 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 190.25-20 chr2 221382605 221383161 + 0.5 NA Intergenic Intergenic 189421 NM_004438 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 262.5-13 chr3 42594308 42595280 + 0.5 NA 3' UTR (NM_016305, exon 4 of 4) 3' UTR (NM_016305, exon 4 of 4) 3934 NM_001370300 51188 Hs.534454 NM_016305 ENSG00000008324 SS18L2 KIAA-iso SS18 like 2 protein-coding 205-30 chr3 88943010 88943533 + 0.5 NA Intergenic MER21B|LTR|ERVL -164350 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 150.75-16 chr11 89169779 89170284 + 0.5 NA Intergenic Intergenic -7844 NM_000372 7299 Hs.503555 NM_000372 ENSG00000077498 TYR ATN|CMM8|OCA1|OCA1A|OCAIA|SHEP3 tyrosinase protein-coding 155-37 chr17 62394701 62395171 + 0.5 NA intron (NM_001144933, intron 7 of 11) intron (NM_001144933, intron 7 of 11) 14383 NM_173503 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 151.75-12 chr10 126114291 126114753 + 0.5 NA intron (NM_001288974, intron 6 of 18) AluSq2|SINE|Alu -141249 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 181-18 chr15 65346184 65346904 + 0.5 NA intron (NM_004884, intron 2 of 13) AluSx1|SINE|Alu 31458 NM_004884 9543 Hs.128292 NM_004884 ENSG00000174498 IGDCC3 HsT18880|PUNC immunoglobulin superfamily DCC subclass member 3 protein-coding 228.25-27 chr6 56315057 56315645 + 0.5 NA intron (NM_001318752, intron 1 of 28) MLT1M|LTR|ERVL-MaLR -67771 NR_134851 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 150-97 chr9 35241855 35242325 + 0.5 NA intron (NM_006377, intron 5 of 38) intron (NM_006377, intron 5 of 38) 80081 NM_001371186 147-117 chr9 15816440 15816775 + 0.5 NA intron (NM_001355547, intron 20 of 24) L2|LINE|L2 252629 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 165-47 chr2 212190800 212191373 + 0.5 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 235274 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 180.75-18 chr14 64922963 64923537 + 0.5 NA intron (NM_001204063, intron 1 of 3) FLAM_C|SINE|Alu 8795 NM_001202558 100529261 Hs.325531 NM_001202558 ENSG00000125954 CHURC1-FNTB FNTB|FTase-beta CHURC1-FNTB readthrough protein-coding 201.75-23 chr2 204000965 204001592 + 0.5 NA Intergenic LTR33|LTR|ERVL 64530 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 218.25-5 chr10 11945851 11946538 + 0.5 NA intron (NM_080599, intron 16 of 21) intron (NM_080599, intron 16 of 21) -51484 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 - PROSER2 antisense RNA 1 ncRNA 175.25-11 chr11 58436515 58437156 + 0.5 NA Intergenic L1MEc|LINE|L1 3338 NM_001004733 390191 Hs.553754 NM_001004733 ENSG00000172362 OR5B12 OR11-241|OR5B12P|OR5B16|OST743 olfactory receptor family 5 subfamily B member 12 protein-coding 185.25-27 chr15 92897883 92898325 + 0.5 NA non-coding (NR_037600, exon 5 of 5) non-coding (NR_037600, exon 5 of 5) -2220 NM_001271 1106 Hs.220864 NM_001271 ENSG00000173575 CHD2 EEOC chromodomain helicase DNA binding protein 2 protein-coding 213.75-25 chr4 120907187 120907754 + 0.5 NA intron (NM_001300824, intron 2 of 13) intron (NM_001300824, intron 2 of 13) 15396 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 148.25-10 chr10 95770285 95770872 + 0.5 NA intron (NR_038444, intron 5 of 5) intron (NR_038444, intron 5 of 5) 14415 NM_001776 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 176-46 chr4 19927201 19927674 + 0.5 NA Intergenic Intergenic -324468 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 152-38 chr2 55912407 55912929 + 0.5 NA intron (NM_001039349, intron 4 of 10) intron (NM_001039349, intron 4 of 10) 11114 NM_001039348 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 215.5-51 chr8 110780861 110781659 + 0.5 NA Intergenic Intergenic 246173 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 152-86 chr6 164670396 164670923 + 0.5 NA Intergenic L1MB8|LINE|L1 151404 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 190-8 chr10 101395641 101396196 + 0.5 NA intron (NM_003939, intron 1 of 13) intron (NM_003939, intron 1 of 13) 41753 NM_033637 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 160.5-93 chr5 82149554 82150031 + 0.5 NA intron (NM_031482, intron 3 of 7) MamTip2|DNA|hAT-Tip100 128562 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 219-9 chr2 117192855 117193411 + 0.5 NA Intergenic Intergenic -621558 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 154.25-80 chr7 110738101 110738507 + 0.5 NA intron (NM_001350963, intron 5 of 5) L1PBa|LINE|L1 -352702 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 168.75-105 chr9 37086232 37086665 + 0.5 NA intron (NR_036592, intron 1 of 1) intron (NR_036592, intron 1 of 1) 6552 NR_036592 100506710 Hs.446271 NR_036592 ENSG00000281649 EBLN3P EBLN3 endogenous Bornavirus like nucleoprotein 3, pseudogene pseudo 179.25-83 chrX 27074260 27074762 + 0.5 NA Intergenic Intergenic 388830 NM_207319 139420 Hs.350673 NM_207319 ENSG00000224960 PPP4R3C FLFL3P|PPP4R3CP|SMEK3P|smk1 protein phosphatase 4 regulatory subunit 3C protein-coding 153-31 chr18 54950240 54950629 + 0.5 NA intron (NM_025214, intron 1 of 11) intron (NM_025214, intron 1 of 11) 7614 NM_001143829 80323 Hs.120790 NM_025214 ENSG00000166510 CCDC68 SE57-1 coiled-coil domain containing 68 protein-coding 172.5-7 chr10 77750288 77750806 + 0.5 NA Intergenic AluSz6|SINE|Alu -112739 NM_001322836 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 180-29 chr18 12462081 12462587 + 0.5 NA intron (NM_020148, intron 11 of 15) intron (NM_020148, intron 11 of 15) 29560 NR_136514 105371998 Hs.515283 NR_136514 LOC105371998 - uncharacterized LOC105371998 ncRNA 173.5-39 chr20 2364463 2364975 + 0.5 NA Intergenic AluYf1|SINE|Alu -16182 NM_001254734 343641 Hs.452039 NM_198994 ENSG00000166948 TGM6 SCA35|TG6|TGM3L|TGY|dJ734P14.3 transglutaminase 6 protein-coding 196.25-7 chr12 15369611 15370081 + 0.5 NA intron (NM_030667, intron 1 of 26) AluSx1|SINE|Alu 47338 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 177.25-62 chr5 147204871 147205269 + 0.5 NA intron (NR_147190, intron 1 of 3) MSTD|LTR|ERVL-MaLR 29789 NR_147190 105378217 Hs.162649 NR_147190 STK32A-AS1 - STK32A antisense RNA 1 ncRNA 211.5-26 chr2 56358769 56359356 + 0.5 NA intron (NM_001348515, intron 3 of 3) AluSq|SINE|Alu -173292 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 200.5-22 chr17 32677374 32677881 + 0.5 NA intron (NM_015194, intron 16 of 21) intron (NM_015194, intron 16 of 21) 190634 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 172-41 chr2 123068026 123068644 + 0.5 NA intron (NR_147208, intron 2 of 2) intron (NR_147208, intron 2 of 2) 5146 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 167.25-60 chr5 20244092 20244670 + 0.5 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -61170 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 159-16 chr11 109701415 109701745 + 0.5 NA Intergenic L1PA16|LINE|L1 279390 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 174.5-11 chr1 220354866 220355523 + 0.5 NA Intergenic Intergenic -82741 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 173-58 chr4 111159134 111159809 + 0.5 NA Intergenic L1MA6|LINE|L1 -298824 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 166.75-48 chr21 30641307 30641810 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL -1306 NM_001128077 337985 Hs.580878 NM_001128077 ENSG00000206104 KRTAP20-3 KAP19D|KAP20.3|KRTAP19P4 keratin associated protein 20-3 protein-coding 266.25-13 chr5 44055433 44056151 + 0.5 NA Intergenic Tigger3c|DNA|TcMar-Tigger -332940 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 165.5-77 chr6 47585502 47586035 + 0.5 NA intron (NM_012120, intron 11 of 17) L1MEc|LINE|L1 -70704 NM_001368115 222611 Hs.724860 NM_153839 ENSG00000164393 ADGRF2 GPR111|PGR20|hGPCR35 adhesion G protein-coupled receptor F2 protein-coding 197.5-60 chr8 138323503 138324113 + 0.5 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 173453 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 151.75-30 chr14 77432287 77432642 + 0.5 NA intron (NM_001193315, intron 16 of 19) L1MA7|LINE|L1 -9408 NM_001113475 122945 Hs.97556 NM_138791 ENSG00000165555 NOXRED1 C14orf148 NADP dependent oxidoreductase domain containing 1 protein-coding 153.75-72 chr6 57284068 57284637 + 0.5 NA Intergenic Intergenic -21006 NR_109774 100506188 Hs.485640 NR_109774 LOC100506188 - uncharacterized LOC100506188 ncRNA 149.25-117 chr9 17448145 17448625 + 0.5 NA intron (NM_001365029, intron 18 of 25) intron (NM_001365029, intron 18 of 25) -130681 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 155.5-85 chr5 161597582 161597998 + 0.5 NA Intergenic Intergenic -49386 NM_000813 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 162.25-59 chr4 66633030 66633566 + 0.5 NA Intergenic Intergenic 356474 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 217-26 chr7 48441385 48442183 + 0.5 NA intron (NM_152701, intron 42 of 61) intron (NM_152701, intron 42 of 61) 270326 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 155.75-65 chr3 1379005 1379388 + 0.5 NA intron (NM_001289080, intron 17 of 22) intron (NM_001289080, intron 17 of 22) 286172 NM_001349350 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 175-23 chr20 14821123 14821585 + 0.5 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 108164 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 167.5-94 chr8 139953370 139954006 + 0.5 NA intron (NM_001160372, intron 19 of 22) L1ME1|LINE|L1 146847 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 183.5-74 chr8 119567385 119567845 + 0.5 NA intron (NM_001330600, intron 23 of 25) intron (NM_001330600, intron 23 of 25) 25393 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 212.5-17 chr17 69460107 69460580 + 0.5 NA intron (NM_002758, intron 1 of 11) intron (NM_002758, intron 1 of 11) 25189 NR_145982 105371880 NR_145982 LOC105371880 - uncharacterized LOC105371880 ncRNA 167.5-45 chr2 120710275 120710850 + 0.5 NA Intergenic Intergenic -25306 NM_001371271 209.5-12 chr14 44772045 44772646 + 0.5 NA intron (NR_146457, intron 2 of 4) intron (NR_146457, intron 2 of 4) 26781 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 167.5-81 chr5 134141001 134141475 + 0.5 NA intron (NM_001346450, intron 5 of 9) intron (NM_001346450, intron 5 of 9) 17620 NM_001366502 6932 Hs.573153 NM_003202 ENSG00000081059 TCF7 TCF-1 transcription factor 7 protein-coding 149.25-16 chr11 95977424 95977857 + 0.5 NA 3' UTR (NM_032427, exon 5 of 5) 3' UTR (NM_032427, exon 5 of 5) -53433 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 148.75-51 chr2 153368949 153369473 + 0.5 NA Intergenic L1MEf|LINE|L1 109551 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 215.5-39 chr4 169423869 169424372 + 0.5 NA intron (NM_001199400, intron 28 of 32) intron (NM_001199400, intron 28 of 32) -153164 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 166.5-19 chr14 50347802 50348240 + 0.5 NA intron (NM_001282236, intron 3 of 8) HAL1|LINE|L1 35697 NM_001370605 27109 Hs.438489 NM_015684 ENSG00000125375 DMAC2L ATP5S|ATPW|FB|HSU79253 distal membrane arm assembly complex 2 like protein-coding 203.75-37 chr5 129672656 129673313 + 0.5 NA intron (NM_133638, intron 16 of 22) L1MEf|LINE|L1 -75110 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 204.25-2 chr1 198989350 198989984 + 0.5 NA Intergenic THE1C|LTR|ERVL-MaLR -26466 NR_126351 104266961 Hs.576501 NR_126351 ENSG00000235492 LINC01221 TCONS_00000366 long intergenic non-protein coding RNA 1221 ncRNA 213.5-21 chr17 16085333 16086149 + 0.5 NA intron (NM_001190440, intron 22 of 44) L1ME2z|LINE|L1 67455 NR_145787 109623477 NR_145787 SNORD163 - small nucleolar RNA, C/D box 163 snoRNA 179.5-20 chr14 44918261 44918735 + 0.5 NA Intergenic L1MC5a|LINE|L1 -6581 NR_110050 101927418 Hs.144809 NR_110050 ENSG00000258949 LOC101927418 - uncharacterized LOC101927418 ncRNA 181.5-7 chr1 229442194 229442885 + 0.5 NA intron (NM_018230, intron 25 of 25) intron (NM_018230, intron 25 of 25) -8443 NM_001100 58 Hs.1288 NM_001100 ENSG00000143632 ACTA1 ACTA|ASMA|CFTD|CFTD1|CFTDM|MPFD|NEM1|NEM2|NEM3|SHPM actin alpha 1, skeletal muscle protein-coding 189-24 chr17 59767316 59767777 + 0.5 NA intron (NM_001329400, intron 4 of 9) intron (NM_001329400, intron 4 of 9) 59892 NM_001329397 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 147.5-31 chr16 60677267 60677736 + 0.5 NA Intergenic Intergenic -317708 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 186.25-37 chr4 37217939 37218507 + 0.5 NA Intergenic Intergenic 23768 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 191-53 chr8 130568378 130568801 + 0.5 NA Intergenic Intergenic -124915 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 168.5-108 chrX 155001627 155002226 + 0.5 NA intron (NM_000132, intron 1 of 25) L1MB2|LINE|L1 20797 NM_000132 2157 Hs.632836 NM_000132 ENSG00000185010 F8 AHF|DXS1253E|F8B|F8C|FVIII|HEMA coagulation factor VIII protein-coding 151.25-41 chr2 73575532 73576030 + 0.5 NA intron (NM_015120, intron 16 of 22) L1MB8|LINE|L1 66641 NM_003960 9027 Hs.14637 NM_003960 ENSG00000144035 NAT8 ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510 N-acetyltransferase 8 (putative) protein-coding 154.25-32 chr14 53954045 53954488 + 0.5 NA promoter-TSS (NM_001347915) promoter-TSS (NM_001347915) 234 NM_130851 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 214-27 chr4 97653303 97654106 + 0.5 NA intron (NM_174952, intron 10 of 10) intron (NM_174952, intron 10 of 10) 286778 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 199-30 chr5 109982329 109982887 + 0.5 NA Intergenic AluJb|SINE|Alu 99426 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 150.25-80 chr5 37246137 37246519 + 0.5 NA intron (NM_023073, intron 2 of 51) 7SLRNA|srpRNA|srpRNA -2718 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 161.75-60 chr4 56667860 56668486 + 0.5 NA intron (NM_032495, intron 1 of 3) AluSx1|SINE|Alu -11651 NM_001145459 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 161.5-17 chr10 67829636 67830239 + 0.5 NA intron (NM_021800, intron 1 of 4) intron (NM_021800, intron 1 of 4) 8242 NM_201262 56521 Hs.260720 NM_021800 ENSG00000108176 DNAJC12 HPANBH4|JDP1 DnaJ heat shock protein family (Hsp40) member C12 protein-coding 152.5-52 chr2 77384940 77385480 + 0.5 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 137166 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 146-87 chr7 87334529 87334918 + 0.5 NA intron (NR_015381, intron 2 of 2) L1MB7|LINE|L1 10769 NR_015381 11257 Hs.274329 NM_007233 ENSG00000182165 TP53TG1 LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1 TP53 target 1 ncRNA 157.5-34 chr15 57192530 57192987 + 0.5 NA intron (NM_207038, intron 7 of 19) intron (NM_207038, intron 7 of 19) -26672 NM_001306220 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 188.75-66 chr9 28236161 28236703 + 0.5 NA intron (NM_152570, intron 5 of 6) L1M1|LINE|L1 482873 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 163.5-72 chr3 59965307 59965904 + 0.5 NA intron (NM_001320901, intron 5 of 6) intron (NM_001320901, intron 5 of 6) 115304 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 158.5-99 chr8 109276080 109276584 + 0.5 NA intron (NM_032869, intron 6 of 9) intron (NM_032869, intron 6 of 9) 53601 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 184.25-17 chr13 42846533 42847109 + 0.5 NA intron (NR_126389, intron 3 of 4) intron (NR_126389, intron 3 of 4) 25923 NR_126389 104355147 Hs.633967 NR_126388 LINC00428 - long intergenic non-protein coding RNA 428 ncRNA 147.75-69 chr3 58747139 58747593 + 0.5 NA intron (NM_001351530, intron 15 of 15) intron (NM_001351530, intron 15 of 15) -77105 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 190.75-35 chr2 157752245 157752703 + 0.5 NA intron (NM_001111067, intron 9 of 10) L1PB1|LINE|L1 86156 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 188.75-18 chr13 31399596 31400077 + 0.5 NA Intergenic L1M1|LINE|L1 199861 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 150-63 chr3 100931380 100931972 + 0.5 NA intron (NM_001349332, intron 1 of 35) L1P4|LINE|L1 61814 NM_001349331 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 156.25-12 chr11 78028874 78029387 + 0.5 NA intron (NM_001203261, intron 2 of 2) AluSz|SINE|Alu -5854 NM_023930 65987 Hs.709780 NM_023930 ENSG00000151364 KCTD14 - potassium channel tetramerization domain containing 14 protein-coding 183-30 chr2 139459083 139459510 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 561972 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 241.5-17 chr3 35321033 35321829 + 0.5 NA intron (NR_110817, intron 1 of 3) intron (NR_110817, intron 1 of 3) 72592 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 168.75-91 chr6 138248130 138248603 + 0.5 NA intron (NM_020340, intron 8 of 33) MER90|LTR|ERV1 -29876 NM_021635 59351 Hs.302016 NM_021635 ENSG00000254440 PBOV1 UC28|UROC28|dJ171N11.2 prostate and breast cancer overexpressed 1 protein-coding 147.5-74 chr5 24624317 24624736 + 0.5 NA intron (NM_001362460, intron 1 of 9) intron (NM_001362460, intron 1 of 9) 20452 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 146.25-77 chr5 109367061 109367513 + 0.5 NA intron (NM_014819, intron 5 of 9) intron (NM_014819, intron 5 of 9) -40918 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 172.5-26 chr15 60514808 60515237 + 0.5 NA intron (NM_134260, intron 4 of 11) intron (NM_134260, intron 4 of 11) 35844 NR_120342 101928784 Hs.655155 NR_120339 ENSG00000245534 RORA-AS1 - RORA antisense RNA 1 ncRNA 169.5-10 chr10 35592890 35593344 + 0.5 NA Intergenic Intergenic -12224 NM_153368 219770 Hs.638922 NM_153368 ENSG00000177291 GJD4 CX40.1 gap junction protein delta 4 protein-coding 209.25-5 chr10 95114928 95115385 + 0.5 NA Intergenic L1MA1|LINE|L1 -45659 NM_001198855 1558 Hs.709188 NM_000770 ENSG00000138115 CYP2C8 CPC8|CYP2C8DM|CYPIIC8|MP-12/MP-20 cytochrome P450 family 2 subfamily C member 8 protein-coding 192.25-48 chr4 158636310 158636814 + 0.5 NA intron (NR_045581, intron 12 of 17) MIR|SINE|MIR 35325 NM_001008393 201725 Hs.380920 NM_001008393 ENSG00000205208 C4orf46 RCDG1 chromosome 4 open reading frame 46 protein-coding 155.25-24 chr14 20090107 20090637 + 0.5 NA Intergenic Intergenic -27096 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 190.5-30 chr2 175467255 175467904 + 0.5 NA Intergenic Intergenic -285869 NM_001689 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 156.75-23 chr11 70412405 70412904 + 0.5 NA intron (NM_005231, intron 5 of 17) intron (NM_005231, intron 5 of 17) 14125 NM_001184740 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 182.25-11 chr13 102799257 102799829 + 0.5 NA promoter-TSS (NM_024089) promoter-TSS (NM_024089) 424 NM_001159596 54841 Hs.288809 NM_017693 ENSG00000134897 BIVM - basic, immunoglobulin-like variable motif containing protein-coding 240.5-17 chr3 2983315 2983987 + 0.5 NA intron (NM_175607, intron 13 of 24) MIR|SINE|MIR 77494 NR_046554 100873975 Hs.581502 NR_046554 CNTN4-AS1 - CNTN4 antisense RNA 1 ncRNA 159.75-72 chr4 92961401 92962037 + 0.5 NA intron (NM_001286838, intron 2 of 14) L1MC1|LINE|L1 657320 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 164.25-71 chr5 13577477 13578068 + 0.5 NA Intergenic Intergenic 366708 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 214.75-43 chr6 7815517 7816305 + 0.5 NA intron (NM_001718, intron 1 of 6) intron (NM_001718, intron 1 of 6) 89812 NM_001718 654 Hs.285671 NM_001718 ENSG00000153162 BMP6 VGR|VGR1 bone morphogenetic protein 6 protein-coding 211-13 chr14 41680536 41681284 + 0.5 NA intron (NM_001346173, intron 1 of 4) L1MA3|LINE|L1 74054 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 147.75-114 chr8 126755922 126756483 + 0.5 NA Intergenic AluSx|SINE|Alu -197724 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 231.5-10 chr19 38216161 38216876 + 0.5 NA intron (NM_004647, intron 6 of 10) intron (NM_004647, intron 6 of 10) 7732 NM_001289978 8193 Hs.631576 NM_004647 ENSG00000011332 DPF1 BAF45b|NEUD4|neuro-d4 double PHD fingers 1 protein-coding 155.25-31 chr15 65116858 65117417 + 0.5 NA TTS (NM_005707) TTS (NM_005707) -10778 NM_001163692 390595 Hs.659256 NM_001163692 ENSG00000246922 UBAP1L UBAP-1L ubiquitin associated protein 1 like protein-coding 211-9 chr10 131762252 131762811 + 0.5 NA Intergenic L1MEd|LINE|L1 27668 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 185.5-19 chr11 91674005 91674643 + 0.5 NA Intergenic Intergenic -550710 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 233.75-24 chr4 151901336 151901911 + 0.5 NA Intergenic L1M3de|LINE|L1 -140600 NM_001363341 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 171.5-45 chr2 63116958 63117574 + 0.5 NA TTS (NR_036635) TTS (NR_036635) 2276 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 204.75-10 chr12 20661283 20661977 + 0.5 NA intron (NM_000921, intron 15 of 15) THE1C-int|LTR|ERVL-MaLR -33725 NM_001145946 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 148-5 chr1 115220626 115221025 + 0.5 NA Intergenic Intergenic -62209 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 194-9 chr10 55836840 55837475 + 0.5 NA Intergenic LTR73|LTR|ERV1 -209215 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 165-44 chr2 162630777 162631266 + 0.5 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -137915 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 213.5-38 chr6 46151096 46151704 + 0.5 NA Intergenic L1MEg|LINE|L1 19580 NM_001290072 59084 Hs.35198 NM_021572 ENSG00000112796 ENPP5 NPP-5|NPP5 ectonucleotide pyrophosphatase/phosphodiesterase family member 5 protein-coding 166-27 chr15 36228833 36229327 + 0.5 NA Intergenic Intergenic 302224 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 156.5-113 chr9 23983887 23984317 + 0.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -133501 NM_001351460 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 149.25-72 chr4 32729672 32730146 + 0.5 NA Intergenic L1MA5|LINE|L1 378871 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 177-8 chr10 106442749 106443265 + 0.5 NA Intergenic L1MC3|LINE|L1 302842 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 191.5-33 chr21 21061888 21062497 + 0.5 NA intron (NM_001352595, intron 1 of 14) intron (NM_001352595, intron 1 of 14) 63783 NM_004540 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 176-63 chr7 39837179 39837693 + 0.5 NA Intergenic L1PA15|LINE|L1 103868 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 148.75-5 chr1 194732606 194733145 + 0.5 NA Intergenic Intergenic 1355840 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 159-88 chr9 75736495 75737048 + 0.5 NA Intergenic Intergenic -153873 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 159.25-57 chr4 44495315 44495822 + 0.5 NA Intergenic MLT2A2|LTR|ERVL -46759 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 233.25-36 chr9 79995026 79995734 + 0.5 NA intron (NR_121212, intron 3 of 4) intron (NR_121212, intron 3 of 4) 20357 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 185.75-63 chr5 94187540 94188169 + 0.5 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -76155 NM_001163417 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 185.5-4 chr1 60187119 60187605 + 0.5 NA Intergenic L1MC1|LINE|L1 -113592 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 175.25-64 chr7 6060335 6060746 + 0.5 NA Intergenic Intergenic -1311 NM_001134335 27102 Hs.520205 NM_014413 ENSG00000086232 EIF2AK1 HCR|HRI eukaryotic translation initiation factor 2 alpha kinase 1 protein-coding 159.5-92 chr8 17117498 17117847 + 0.5 NA intron (NR_146233, intron 14 of 15) AluSz|SINE|Alu -38810 NM_016353 51201 Hs.728241 NM_016353 ENSG00000104219 ZDHHC2 DHHC2|ZNF372 zinc finger DHHC-type containing 2 protein-coding 167.25-75 chr8 57666733 57667174 + 0.5 NA Intergenic Intergenic -79196 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 212.25-54 chr9 29506713 29507352 + 0.5 NA Intergenic L1MEd|LINE|L1 -293431 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 209.25-42 chr7 54378047 54378720 + 0.5 NA Intergenic L1MC1|LINE|L1 47686 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 145.75-82 chr3 175787956 175788380 + 0.5 NA intron (NM_207015, intron 13 of 13) AluJb|SINE|Alu -11835 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 167.75-86 chr7 53306674 53307153 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR 271280 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 227.75-34 chr8 32028417 32028944 + 0.5 NA intron (NR_104157, intron 1 of 2) intron (NR_104157, intron 1 of 2) 2462 NR_104157 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 183-25 chr2 29551480 29552048 + 0.5 NA intron (NM_004304, intron 3 of 28) L1ME4a|LINE|L1 -76387 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 163.75-32 chr2 186618932 186619384 + 0.5 NA intron (NM_001145000, intron 2 of 27) intron (NM_001145000, intron 2 of 27) 18953 NM_001144999 3685 Hs.436873 NM_002210 ENSG00000138448 ITGAV CD51|MSK8|VNRA|VTNR integrin subunit alpha V protein-coding 147-13 chr10 93671879 93672372 + 0.5 NA intron (NM_145246, intron 12 of 13) intron (NM_145246, intron 12 of 13) 30447 NM_001347713 118924 Hs.586650 NM_145246 ENSG00000148690 FRA10AC1 C10orf4|F26C11.1-like|FRA10A FRA10A associated CGG repeat 1 protein-coding 153-44 chr2 204862029 204862431 + 0.5 NA intron (NM_205863, intron 2 of 21) MIR3|SINE|MIR 316755 NM_205863 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 150.5-11 chr1 180693892 180694370 + 0.5 NA intron (NR_137330, intron 2 of 12) AluJo|SINE|Alu 62109 NM_004736 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 147.25-67 chr4 109628580 109629049 + 0.5 NA intron (NM_017918, intron 1 of 7) intron (NM_017918, intron 1 of 7) 68568 NM_017918 55013 Hs.234149 NM_017918 ENSG00000005059 MCUB CCDC109B mitochondrial calcium uniporter dominant negative beta subunit protein-coding 179.5-48 chr20 57852658 57853258 + 0.5 NA Intergenic L1MEf|LINE|L1 -141422 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 197-44 chr8 119782016 119782501 + 0.5 NA intron (NM_003184, intron 16 of 25) intron (NM_003184, intron 16 of 25) 50583 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 167-65 chr4 180748026 180748538 + 0.5 NA Intergenic Intergenic 410867 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 154-17 chr11 10120223 10120772 + 0.5 NA intron (NM_030962, intron 2 of 39) L1MB2|LINE|L1 173710 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 199.75-16 chr13 70808764 70809357 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR -206081 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 149.75-69 chr5 6228033 6228496 + 0.5 NA Intergenic Intergenic 109028 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 186.75-48 chr20 51582298 51582837 + 0.5 NA Intergenic L2b|LINE|L2 -19728 NM_001258292 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 159.75-69 chr4 34229824 34230279 + 0.5 NA intron (NR_147184, intron 2 of 3) L1MA3|LINE|L1 39696 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 171.75-73 chr7 2561676 2562037 + 0.5 NA intron (NM_001287501, intron 1 of 19) L1M4|LINE|L1 2877 NM_152558 23288 Hs.520627 NM_152558 ENSG00000106012 IQCE 1700028P05Rik|PAPA7 IQ motif containing E protein-coding 148.5-22 chr12 60073397 60073866 + 0.5 NA Intergenic LTR53-int|LTR|ERVL 384261 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 224-15 chr2 158497275 158497801 + 0.5 NA intron (NM_001005476, intron 1 of 20) intron (NM_001005476, intron 1 of 20) 40586 NM_001005476 8502 Hs.407580 NM_003628 ENSG00000144283 PKP4 p0071 plakophilin 4 protein-coding 176-5 chr10 63873864 63874445 + 0.5 NA Intergenic Intergenic -352264 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 156.5-22 chr10 96303941 96304335 + 0.5 NA promoter-TSS (NM_001017520) promoter-TSS (NM_001017520) -296 NM_004088 1791 Hs.534206 NM_004088 ENSG00000107447 DNTT TDT DNA nucleotidylexotransferase protein-coding 162.5-5 chr1 98866585 98867086 + 0.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR -137441 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 146-71 chr5 128188002 128188515 + 0.5 NA non-coding (NR_046207, exon 27 of 27) non-coding (NR_046207, exon 27 of 27) 104492 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 191.5-34 chr21 27255065 27255648 + 0.5 NA Intergenic Intergenic -288268 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 180-22 chr14 56430552 56431000 + 0.5 NA Intergenic Intergenic -83555 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 217.25-27 chr2 234266056 234266652 + 0.5 NA Intergenic AluY|SINE|Alu 188241 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 157-45 chr18 13418560 13419166 + 0.5 NA TTS (NR_040031) TTS (NR_040031) 8671 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 171.75-77 chr7 41212033 41212604 + 0.5 NA Intergenic L1ME2z|LINE|L1 110714 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 182-30 chr2 170108001 170108543 + 0.5 NA Intergenic Intergenic -69875 NM_138995 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 158.75-18 chr12 128623417 128623783 + 0.5 NA intron (NM_001136103, intron 4 of 8) AluSx1|SINE|Alu 200358 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 202-40 chr5 51418882 51419576 + 0.5 NA Intergenic Intergenic 35781 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 150.5-123 chr8 131505796 131506292 + 0.5 NA Intergenic Intergenic -398049 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 179.5-82 chr9 27393731 27394288 + 0.5 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -96859 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 213.75-38 chr7 55865312 55865973 + 0.5 NA Intergenic AluJo|SINE|Alu -2890 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 201.25-12 chr14 56195807 56196418 + 0.5 NA intron (NM_021255, intron 2 of 5) intron (NM_021255, intron 2 of 5) 77701 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 202.25-29 chr19 53695167 53695927 + 0.5 NA TTS (NR_030191) TTS (NR_030191) 334 NR_030191 574469 NR_030191 ENSG00000207825 MIR519B MIRN519B|mir-519b microRNA 519b ncRNA 182-24 chr16 66718693 66719250 + 0.5 NA Intergenic AluSx|SINE|Alu -22228 NM_181521 146223 Hs.643961 NM_178818 ENSG00000183723 CMTM4 CKLFSF4 CKLF like MARVEL transmembrane domain containing 4 protein-coding 163-38 chr17 17307015 17307452 + 0.5 NA intron (NM_020201, intron 2 of 4) L2a|LINE|L2 3860 NM_020201 56953 Hs.513977 NM_020201 ENSG00000205309 NT5M dNT-2|dNT2|mdN 5',3'-nucleotidase, mitochondrial protein-coding 176.25-23 chr13 79156481 79157062 + 0.5 NA Intergenic Intergenic 249450 NM_001286632 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 170-39 chr3 23557578 23558055 + 0.5 NA intron (NM_001370225, intron 5 of 5) intron (NM_001370225, intron 5 of 5) -248139 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 262.75-5 chr10 92865471 92866435 + 0.5 NA intron (NM_001319195, intron 1 of 21) Tigger2a|DNA|TcMar-Tigger 17433 NM_001319195 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 210.5-4 chr10 19801938 19802512 + 0.5 NA Intergenic Intergenic -14207 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 191-51 chr8 64133154 64133729 + 0.5 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 235117 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 177.75-29 chr2 75040064 75040697 + 0.5 NA Intergenic L2|LINE|L2 -50432 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 166.25-69 chr8 114362692 114363166 + 0.5 NA Intergenic L1PB1|LINE|L1 -925990 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 167.75-80 chr6 130587488 130587871 + 0.5 NA Intergenic Intergenic 150562 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 163.5-95 chr5 161509066 161509581 + 0.5 NA intron (NM_000813, intron 4 of 9) intron (NM_000813, intron 4 of 9) 38801 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 174.5-83 chr8 84868243 84868718 + 0.5 NA intron (NM_001287244, intron 5 of 7) AluJr4|SINE|Alu 162553 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 165.5-94 chr8 77951007 77951626 + 0.5 NA Intergenic Intergenic 500619 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 160-11 chr10 126194364 126194782 + 0.5 NA intron (NM_001288974, intron 3 of 18) Charlie29a|DNA|hAT-Charlie 193904 NM_021641 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 153.75-32 chr2 74845929 74846501 + 0.5 NA intron (NM_000189, intron 1 of 17) intron (NM_000189, intron 1 of 17) 13560 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 191.25 chr1 5626637 5627227 + 0.5 NA Intergenic L1ME1|LINE|L1 235809 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 149.5-86 chr7 34251031 34251367 + 0.5 NA Intergenic AluSz|SINE|Alu 345660 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 154.5-103 chrX 72659028 72659509 + 0.5 NA intron (NM_002637, intron 8 of 31) L1MC4a|LINE|L1 -29681 NR_110391 101928259 Hs.666679 NR_110391 ENSG00000231944 PHKA1-AS1 - PHKA1 antisense RNA 1 ncRNA 205.25-40 chr9 32063289 32063818 + 0.5 NA Intergenic L1PB3|LINE|L1 -321050 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 173.25-2 chr1 173782058 173782579 + 0.5 NA intron (NM_014458, intron 11 of 11) intron (NM_014458, intron 11 of 11) 41814 NM_001171182 91687 Hs.531856 NM_033319 ENSG00000120334 CENPL C1orf155|CENP-L|dJ383J4.3 centromere protein L protein-coding 151.5-46 chr19 51234050 51234573 + 0.5 NA intron (NM_001772, intron 4 of 6) L1MC1|LINE|L1 9231 NM_001177608 945 Hs.83731 NM_001772 ENSG00000105383 CD33 SIGLEC-3|SIGLEC3|p67 CD33 molecule protein-coding 163-25 chr12 49447525 49447920 + 0.5 NA intron (NM_001293285, intron 3 of 14) L1M4a2|LINE|L1 58548 NR_033267 100335030 Hs.687044 NR_033267 LOC100335030 - FGFR1 oncogene partner 2 pseudogene pseudo 167-93 chr9 26097549 26098019 + 0.5 NA intron (NM_001004352, intron 3 of 6) intron (NM_001004352, intron 3 of 6) 31109 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 168.25-63 chr5 155844943 155845551 + 0.5 NA Intergenic Intergenic -481510 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 158-3 chr1 81039409 81039966 + 0.5 NA Intergenic Intergenic -266505 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 171.5-80 chr5 41374697 41375256 + 0.5 NA intron (NM_001005473, intron 2 of 2) intron (NM_001005473, intron 2 of 2) -113507 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 158-29 chr19 28447289 28447770 + 0.5 NA intron (NR_110759, intron 7 of 9) MER51-int|LTR|ERV1 -159159 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 193.75-12 chr11 83877724 83878481 + 0.5 NA intron (NM_001142700, intron 7 of 19) L2c|LINE|L2 -195677 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 161.75-83 chr7 55147234 55147762 + 0.5 NA intron (NM_201284, intron 4 of 15) intron (NM_201284, intron 4 of 15) 37659 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 153.25-84 chr4 64710357 64710732 + 0.5 NA Intergenic Intergenic 293956 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 275-18 chr7 38801038 38802015 + 0.5 NA intron (NM_014396, intron 7 of 28) intron (NM_014396, intron 7 of 28) 107665 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 156.25-13 chr11 103019493 103019974 + 0.5 NA Intergenic GA-rich|Low_complexity|Low_complexity -64001 NM_002427 4322 Hs.2936 NM_002427 ENSG00000137745 MMP13 CLG3|MANDP1|MDST|MMP-13 matrix metallopeptidase 13 protein-coding 230.25-16 chr18 5979498 5980308 + 0.5 NA intron (NR_158609, intron 15 of 17) intron (NR_158609, intron 15 of 17) -83949 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 168.5-49 chr2 48064974 48065419 + 0.5 NA Intergenic LTR33C|LTR|ERVL -159403 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 149.25-31 chr14 64669310 64669809 + 0.5 NA Intergenic Intergenic -34865 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 259.75-14 chr4 66183558 66184312 + 0.5 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -92889 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 175.25-21 chr14 48994062 48994556 + 0.5 NA Intergenic Intergenic 592071 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 151-109 chr9 7204565 7205056 + 0.5 NA Intergenic Intergenic 447460 NR_148679 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 160.75-5 chr1 79551883 79552495 + 0.5 NA Intergenic Intergenic -545459 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 170.5-54 chr3 192565196 192565738 + 0.5 NA intron (NM_004113, intron 2 of 5) Tigger3a|DNA|TcMar-Tigger 50445 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 167.75-47 chr2 181279062 181279703 + 0.5 NA intron (NR_130784, intron 3 of 4) intron (NR_130784, intron 3 of 4) 26270 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 244.5-19 chr2 151226249 151226843 + 0.5 NA Intergenic Helitron3Na_Mam|RC|Helitron 35317 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 182.5-27 chr2 106925718 106926444 + 0.5 NA Intergenic L1MCa|LINE|L1 -38972 NM_001142352 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 175.5-68 chr3 187609685 187610205 + 0.5 NA Intergenic MLT1J|LTR|ERVL-MaLR 60449 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 155.25-50 chr2 232657299 232657674 + 0.5 NA intron (NM_001308395, intron 2 of 4) L1MB3|LINE|L1 23882 NM_001308395 80303 Hs.516769 NM_025202 ENSG00000115468 EFHD1 MST133|MSTP133|PP3051|SWS2 EF-hand domain family member D1 protein-coding 196.5-43 chr5 41018982 41019479 + 0.5 NA intron (NM_173489, intron 24 of 41) intron (NM_173489, intron 24 of 41) 52112 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 152.5-10 chr10 42976725 42977050 + 0.5 NA Intergenic Intergenic 4620 NR_126352 104266963 Hs.559152 NR_126352 ENSG00000229630 LINC01264 - long intergenic non-protein coding RNA 1264 ncRNA 183.25-9 chr10 69190349 69190935 + 0.5 NA intron (NM_001323586, intron 6 of 15) L1MC4|LINE|L1 10408 NR_136626 6832 Hs.106469 NM_003171 ENSG00000156502 SUPV3L1 SUV3 Suv3 like RNA helicase protein-coding 165.25-40 chr3 132166485 132166874 + 0.5 NA Intergenic Intergenic -127073 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 216.5-49 chrX 116170814 116171427 + 0.5 NA intron (NM_000686, intron 2 of 2) intron (NM_000686, intron 2 of 2) 376 NM_000686 186 Hs.405348 NM_000686 ENSG00000180772 AGTR2 AT2|ATGR2|MRX88 angiotensin II receptor type 2 protein-coding 156.75-90 chr7 19415135 19415516 + 0.5 NA Intergenic MER5A|DNA|hAT-Charlie -269904 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 198-37 chr5 139797225 139797966 + 0.5 NA intron (NM_032289, intron 1 of 14) intron (NM_032289, intron 1 of 14) 1787 NM_032289 84249 Hs.21963 NM_032289 ENSG00000146005 PSD2 EFA6C pleckstrin and Sec7 domain containing 2 protein-coding 168-47 chr3 66968945 66969434 + 0.5 NA Intergenic Intergenic -29118 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 148.5-87 chr7 3432607 3433050 + 0.5 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 131576 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 157.25-58 chr20 13838277 13838727 + 0.5 NA Intergenic Intergenic 53474 NR_147982 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 270-8 chr2 220798355 220798987 + 0.5 NA Intergenic UCON105|Unknown|Unknown 773633 NM_004438 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 150.25-63 chr3 84145418 84145830 + 0.5 NA Intergenic Intergenic 723951 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 170-34 chr20 3800858 3801463 + 0.5 NA intron (NM_004358, intron 7 of 15) intron (NM_004358, intron 7 of 15) 1098 NM_001287524 994 Hs.153752 NM_004358 ENSG00000101224 CDC25B - cell division cycle 25B protein-coding 187.75-34 chr2 4669605 4670345 + 0.5 NA Intergenic Intergenic -13753 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 181-51 chr8 82396318 82397031 + 0.5 NA Intergenic Intergenic -515430 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 166.25-17 chr12 3446100 3446529 + 0.5 NA intron (NM_001256536, intron 1 of 9) intron (NM_001256536, intron 1 of 9) -44889 NM_019854 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 258.25-25 chr8 101852158 101852960 + 0.5 NA intron (NM_001040628, intron 4 of 7) intron (NM_001040628, intron 4 of 7) -61590 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 176.5-56 chr4 19582168 19582865 + 0.5 NA Intergenic Intergenic -669389 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 173.25-22 chr13 81763706 81764345 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -537042 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 171.25-67 chr8 141114067 141114560 + 0.5 NA Intergenic L1MA3|LINE|L1 -14276 NM_001352890 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 153.5-89 chr6 56513976 56514351 + 0.5 NA intron (NM_001144770, intron 64 of 94) intron (NM_001144770, intron 64 of 94) -120035 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 265.5-27 chr9 9530467 9531370 + 0.5 NA intron (NM_002839, intron 8 of 45) L1MA4A|LINE|L1 -268474 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 175.5-95 chr8 130261840 130262365 + 0.5 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 34431 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 150-85 chr8 83183744 83184149 + 0.5 NA Intergenic Intergenic -219812 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 175.5-35 chr16 87428501 87428992 + 0.5 NA intron (NM_015144, intron 3 of 12) L1ME1|LINE|L1 36410 NM_022818 81631 Hs.356061 NM_022818 ENSG00000140941 MAP1LC3B ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a microtubule associated protein 1 light chain 3 beta protein-coding 155.75-29 chr13 94852427 94852825 + 0.5 NA intron (NR_110754, intron 2 of 4) intron (NR_110754, intron 2 of 4) 91685 NR_110754 101927284 Hs.551673 NR_110754 LOC101927284 - uncharacterized LOC101927284 ncRNA 152.75-27 chr13 22641830 22642201 + 0.5 NA Intergenic MER45C|DNA|hAT-Tip100 256166 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 185.75-92 chrX 77595972 77596580 + 0.5 NA intron (NM_000489, intron 25 of 34) tRNA-Met_|tRNA|tRNA 148887 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 154-81 chr5 29301425 29301914 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 94307 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 156.5-92 chr5 133545653 133546250 + 0.5 NA intron (NM_015082, intron 3 of 15) MSTB2-int|LTR|ERVL-MaLR 66590 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 164-9 chr11 24633025 24633454 + 0.5 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 136186 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 153.5-7 chr1 191523450 191523818 + 0.5 NA Intergenic L1M5|LINE|L1 -295136 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 158.5-91 chr6 118743601 118744141 + 0.5 NA Intergenic Intergenic -33796 NM_001178035 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 220.25-23 chr2 173679565 173680106 + 0.5 NA Intergenic MSTD|LTR|ERVL-MaLR 284045 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 198-6 chr11 91850179 91850936 + 0.5 NA Intergenic Intergenic -374477 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 185.25-61 chr4 96405709 96406094 + 0.5 NA intron (NR_147149, intron 1 of 3) (ATTA)n|Simple_repeat|Simple_repeat 95198 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 190.5-50 chr5 53235308 53235800 + 0.5 NA Intergenic Intergenic 125712 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 215.75-24 chr4 32652821 32653664 + 0.5 NA Intergenic L1PB1|LINE|L1 302204 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 202.75-37 chr5 64054941 64055469 + 0.5 NA Intergenic Intergenic -92913 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 186.75-49 chr20 56788068 56788514 + 0.5 NA Intergenic Intergenic 158985 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 185.5-59 chr5 68797047 68797592 + 0.5 NA Intergenic LTR104_Mam|LTR|Gypsy 232608 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 150.5-86 chr4 102858319 102858787 + 0.5 NA intron (NM_181890, intron 1 of 7) intron (NM_181890, intron 1 of 7) 10340 NM_181893 7323 Hs.518773 NM_003340 ENSG00000109332 UBE2D3 E2(17)KB3|UBC4/5|UBCH5C ubiquitin conjugating enzyme E2 D3 protein-coding 154.25-75 chr7 11461009 11461455 + 0.5 NA intron (NM_015204, intron 10 of 26) intron (NM_015204, intron 10 of 26) 370966 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 190.25-5 chr10 125987615 125988110 + 0.5 NA intron (NM_001363549, intron 2 of 10) intron (NM_001363549, intron 2 of 10) -14589 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 166.25-27 chr16 12448390 12448924 + 0.5 NA intron (NM_032167, intron 18 of 20) intron (NM_032167, intron 18 of 20) -271664 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 229.5-32 chr6 50086340 50087195 + 0.5 NA Intergenic Intergenic -36838 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 216.25-20 chr21 30858541 30859228 + 0.5 NA Intergenic Intergenic 22696 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 235-20 chr7 113749102 113749955 + 0.5 NA Intergenic L1MCa|LINE|L1 169481 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 165-89 chr8 121068518 121069058 + 0.5 NA Intergenic L1M4b|LINE|L1 -256742 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 191-10 chr11 16576886 16577370 + 0.5 NA intron (NM_001367872, intron 3 of 16) intron (NM_001367872, intron 3 of 16) -100740 NM_033326 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 150.5-6 chr1 79365209 79365737 + 0.5 NA Intergenic Intergenic -358743 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 157.5-64 chr4 31859361 31859865 + 0.5 NA Intergenic L1MCa|LINE|L1 -137766 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 173.75-14 chr11 44187522 44188193 + 0.5 NA intron (NM_207122, intron 8 of 13) MIR3|SINE|MIR 91660 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 167.25-31 chr18 24925278 24925942 + 0.5 NA Intergenic Intergenic 62369 NR_146903 105372030 NR_146903 LINC01894 - long intergenic non-protein coding RNA 1894 ncRNA 168.25-11 chr12 60184679 60185132 + 0.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR 495535 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 155-98 chr7 87983568 87984152 + 0.5 NA intron (NM_001324421, intron 3 of 28) intron (NM_001324421, intron 3 of 28) 49609 NM_001324421 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 159.75-34 chr14 71009078 71009505 + 0.5 NA intron (NM_014982, intron 8 of 35) intron (NM_014982, intron 8 of 35) 101832 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 157-34 chr15 57854903 57855383 + 0.5 NA Intergenic Intergenic 148429 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 150.75-20 chr13 85651666 85652134 + 0.5 NA Intergenic Intergenic 147519 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 198-15 chr2 190075687 190076168 + 0.5 NA Intergenic L1MEc|LINE|L1 -13198 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 182.75-6 chr1 247611757 247612344 + 0.5 NA Intergenic L1MA1|LINE|L1 6464 NM_001001914 81469 Hs.653227 NM_001001914 ENSG00000177476 OR2G3 OR1-33 olfactory receptor family 2 subfamily G member 3 protein-coding 210.75-33 chr4 59817189 59817640 + 0.5 NA Intergenic Intergenic 803841 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 207-7 chr10 126288663 126289395 + 0.5 NA intron (NM_001288974, intron 2 of 18) intron (NM_001288974, intron 2 of 18) 99448 NM_021641 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 240-27 chr7 18266309 18267204 + 0.5 NA intron (NM_001321872, intron 2 of 11) Charlie1a|DNA|hAT-Charlie -23336 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 155-24 chr13 75696190 75696570 + 0.5 NA intron (NM_001306080, intron 1 of 30) AluSx4|SINE|Alu 60050 NM_001306080 4008 Hs.207631 NM_005358 ENSG00000136153 LMO7 FBX20|FBXO20|LMO7b|LOMP LIM domain 7 protein-coding 147.5-102 chr8 76097218 76097763 + 0.5 NA Intergenic Intergenic -309164 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 156.25-3 chr1 186388620 186389203 + 0.5 NA intron (NM_001164246, intron 4 of 12) intron (NM_001164246, intron 4 of 12) -11661 NM_022375 10896 Hs.679230 NM_022375 ENSG00000262180 OCLM TISR oculomedin protein-coding 171.25-39 chr3 94421126 94421533 + 0.5 NA Intergenic L1PA15|LINE|L1 358268 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 152.75-10 chr1 188058602 188058970 + 0.5 NA Intergenic L1MA4A|LINE|L1 615158 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 185-13 chr11 80522582 80523167 + 0.5 NA Intergenic Intergenic 239929 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 183.75-56 chr22 33473406 33473896 + 0.5 NA intron (NM_133642, intron 6 of 14) AluSq2|SINE|Alu -36982 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 177-45 chr4 61362954 61363444 + 0.5 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 161027 NM_001371342 180.75-20 chr15 81395518 81396058 + 0.5 NA intron (NR_120365, intron 6 of 6) intron (NR_120365, intron 6 of 6) -21575 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 175.25-27 chr16 74074723 74075212 + 0.5 NA Intergenic Intergenic 140554 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 196-36 chr4 62761819 62762561 + 0.5 NA Intergenic Intergenic -600425 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 163-79 chr7 119036488 119036965 + 0.5 NA Intergenic Intergenic 812022 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 176.25-71 chr8 139299887 139300376 + 0.5 NA Intergenic Intergenic -386090 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 185.75-57 chr4 74077095 74077710 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 21793 NM_002089 2920 Hs.75765 NM_002089 ENSG00000081041 CXCL2 CINC-2a|GRO2|GROb|MGSA-b|MIP-2a|MIP2|MIP2A|SCYB2 C-X-C motif chemokine ligand 2 protein-coding 190.5-29 chr2 117775704 117776220 + 0.5 NA Intergenic Intergenic -38729 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 151-32 chr17 72650702 72651222 + 0.5 NA intron (NM_001352692, intron 7 of 9) intron (NM_001352692, intron 7 of 9) -10490 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 170.5-49 chr3 97166981 97167621 + 0.5 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) -272306 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 157.5-23 chr12 104756673 104757282 + 0.5 NA exon (NM_001173982, exon 3 of 3) exon (NM_001173982, exon 3 of 3) 165344 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 148.75-106 chr8 141965463 141965920 + 0.5 NA Intergenic Intergenic -179378 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 149-45 chr2 88573977 88574345 + 0.5 NA intron (NM_004836, intron 13 of 16) intron (NM_004836, intron 13 of 16) 35441 NR_110236 101928371 Hs.738045 NR_110236 ENSG00000225420 LOC101928371 - uncharacterized LOC101928371 ncRNA 159.75-92 chr8 88016299 88016910 + 0.5 NA Intergenic Intergenic -142589 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 147.25-39 chr17 32840266 32840805 + 0.5 NA intron (NM_015194, intron 1 of 21) intron (NM_015194, intron 1 of 21) 36589 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 219.25-6 chr10 83371260 83371963 + 0.5 NA Intergenic Intergenic 305478 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 158.5-45 chr2 112003992 112004591 + 0.5 NA intron (NM_006343, intron 13 of 18) intron (NM_006343, intron 13 of 18) -50978 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 175.5-29 chr14 72483237 72483739 + 0.5 NA intron (NM_001370294, intron 12 of 14) intron (NM_001370294, intron 12 of 14) -33332 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 152.75-13 chr1 234010474 234010906 + 0.5 NA intron (NM_173508, intron 2 of 7) L1M2|LINE|L1 106014 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 170.25-75 chr8 84546788 84547176 + 0.5 NA intron (NM_001354308, intron 3 of 9) L1PA8|LINE|L1 131498 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 149.25-79 chr4 117552667 117553024 + 0.5 NA intron (NR_125757, intron 2 of 3) L2c|LINE|L2 124447 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 241.5-27 chr6 144393802 144394471 + 0.5 NA intron (NM_007124, intron 1 of 73) intron (NM_007124, intron 1 of 73) -11519 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 158-84 chr7 19805564 19806070 + 0.5 NA Intergenic Intergenic -32200 NM_001366626 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 243.75-2 chr11 82684129 82685069 + 0.5 NA Intergenic MIRb|SINE|MIR 49265 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 147.5-78 chr5 60348485 60349005 + 0.5 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) 23918 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 171.75-69 chr6 41702199 41702621 + 0.5 NA intron (NM_001167827, intron 1 of 8) intron (NM_001167827, intron 1 of 8) 31200 NR_162107 113218489 NR_162107 MIR10398 - microRNA 10398 ncRNA 187.5-52 chr4 110554303 110555026 + 0.5 NA intron (NM_001977, intron 18 of 19) intron (NM_001977, intron 18 of 19) 60794 NR_147203 110231149 Hs.436030 NR_147203 ENSG00000250103 PANCR - PITX2 adjacent non-coding RNA ncRNA 171-14 chr11 86382731 86383288 + 0.5 NA intron (NM_001156474, intron 1 of 14) intron (NM_001156474, intron 1 of 14) 8122 NM_001156474 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 167.5-20 chr13 109337454 109337858 + 0.5 NA Intergenic L1M5|LINE|L1 -63040 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 148.75-16 chr10 96589641 96589954 + 0.5 NA Intergenic Intergenic -2785 NM_020123 56889 Hs.500674 NM_020123 ENSG00000077147 TM9SF3 EP70-P-iso|SMBP transmembrane 9 superfamily member 3 protein-coding 149.75-90 chr7 17470072 17470585 + 0.5 NA intron (NR_110013, intron 2 of 3) MLT1A0|LTR|ERVL-MaLR 88581 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 158.5-3 chr1 188229830 188230352 + 0.5 NA Intergenic Intergenic 786463 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 158.25-34 chr13 82020226 82020789 + 0.5 NA Intergenic L1MC2|LINE|L1 -793524 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 167.75-96 chr8 116857503 116858146 + 0.5 NA intron (NM_006265, intron 5 of 13) intron (NM_006265, intron 5 of 13) -16600 NR_033886 644660 Hs.706174 NR_033886 ENSG00000253327 RAD21-AS1 C8orf81|NCRNA00255 RAD21 antisense RNA 1 ncRNA 173.75-44 chr3 30589411 30589829 + 0.5 NA Intergenic L1MD1|LINE|L1 -16882 NM_001024847 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 179.25-44 chr21 14232722 14233210 + 0.5 NA Intergenic Intergenic 16809 NR_135309 54033 Hs.283828 NM_144770 ENSG00000185272 RBM11 - RNA binding motif protein 11 protein-coding 157.75-22 chr11 77833379 77833701 + 0.5 NA intron (NM_001316960, intron 2 of 4) MER1A|DNA|hAT-Charlie -7598 NM_001363564 28971 Hs.745040 NM_024684 ENSG00000087884 AAMDC C11orf67|CK067|PTD015 adipogenesis associated Mth938 domain containing protein-coding 200.75-21 chr17 42272327 42273010 + 0.5 NA intron (NM_012448, intron 1 of 18) intron (NM_012448, intron 1 of 18) 3738 NM_012448 6777 Hs.595276 NM_012448 ENSG00000173757 STAT5B STAT5 signal transducer and activator of transcription 5B protein-coding 169.75-4 chr1 88382177 88382717 + 0.5 NA Intergenic Intergenic -301697 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 146.25-57 chr3 14703415 14703984 + 0.5 NA intron (NM_001184957, intron 6 of 16) intron (NM_001184957, intron 6 of 16) 28558 NM_001184957 84077 Hs.661452 NM_032137 ENSG00000131379 C3orf20 - chromosome 3 open reading frame 20 protein-coding 302.5-2 chr1 185015265 185015966 + 0.5 NA Intergenic Intergenic 14088 NR_146489 101929069 Hs.497170 NR_146489 ENSG00000260976 LINC01633 GS1-120K12.4 long intergenic non-protein coding RNA 1633 ncRNA 236.25-5 chr10 84216835 84217454 + 0.5 NA 3' UTR (NM_033100, exon 17 of 17) 3' UTR (NM_033100, exon 17 of 17) 8400 NM_001017924 340745 Hs.450425 NM_001017924 ENSG00000204033 LRIT2 LRRC22 leucine rich repeat, Ig-like and transmembrane domains 2 protein-coding 146-78 chr6 53890313 53890759 + 0.5 NA intron (NM_018214, intron 4 of 13) intron (NM_018214, intron 4 of 13) -39446 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 187.25-22 chr14 64660544 64661097 + 0.5 NA Intergenic L1MC4|LINE|L1 -43604 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 160-39 chr2 30454884 30455283 + 0.5 NA intron (NM_001304446, intron 1 of 5) intron (NM_001304446, intron 1 of 5) 7837 NM_001304445 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 183-11 chr11 134698608 134699181 + 0.5 NA Intergenic Intergenic -37051 NR_147836 729305 Hs.148365 NR_147836 ENSG00000251226 LINC02714 - long intergenic non-protein coding RNA 2714 ncRNA 222-6 chr13 25621010 25621833 + 0.5 NA intron (NM_016529, intron 24 of 36) intron (NM_016529, intron 24 of 36) 152647 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 156-95 chr8 106247336 106247787 + 0.5 NA Intergenic Charlie3|DNA|hAT-Charlie -22617 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 187.25-62 chr7 36674336 36674906 + 0.5 NA intron (NM_001177507, intron 1 of 19) intron (NM_001177507, intron 1 of 19) 49873 NM_001637 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 170-65 chr8 84770933 84771377 + 0.5 NA intron (NM_001287244, intron 1 of 7) L1PB1|LINE|L1 65228 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 158.25-119 chr9 124165961 124166555 + 0.5 NA Intergenic L1MEf|LINE|L1 -91348 NM_001166167 10783 Hs.197071 NM_014397 ENSG00000119408 NEK6 SID6-1512 NIMA related kinase 6 protein-coding 201.75-20 chr2 83128656 83129279 + 0.5 NA Intergenic Intergenic 272164 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 187.25-42 chr3 94458239 94458861 + 0.5 NA Intergenic Intergenic 395489 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 196.25-50 chr7 17088591 17089248 + 0.5 NA Intergenic Intergenic -206936 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 248.5-10 chr2 192458005 192458925 + 0.5 NA Intergenic Intergenic -263532 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 169.5-35 chr16 52860321 52860944 + 0.5 NA Intergenic Intergenic 192241 NR_136518 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 158.25-33 chr13 63551377 63551779 + 0.5 NA Intergenic Intergenic -185857 NR_002171 283491 Hs.363054 NR_002171 OR7E156P - olfactory receptor family 7 subfamily E member 156 pseudogene pseudo 153.25-61 chr2 68630420 68630948 + 0.5 NA Intergenic Intergenic -12904 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 218.75-13 chr2 167345557 167346310 + 0.5 NA Intergenic Intergenic 158561 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 171.25-49 chr6 23112783 23113387 + 0.5 NA Intergenic HUERS-P3b-int|LTR|ERV1 -395161 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 192.75-18 chr13 33507766 33508278 + 0.5 NA intron (NM_001243476, intron 4 of 17) Tigger2a|DNA|TcMar-Tigger 168772 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 206-23 chr3 123935258 123935930 + 0.5 NA intron (NM_001366336, intron 5 of 8) L1ME3G|LINE|L1 25635 NM_001366339 64770 Hs.645028 NM_022757 ENSG00000175455 CCDC14 - coiled-coil domain containing 14 protein-coding 163.5-7 chr1 106359585 106359987 + 0.5 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -331533 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 150.5-3 chr1 50834015 50834372 + 0.5 NA intron (NM_007051, intron 2 of 18) MSTA|LTR|ERVL-MaLR 126074 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 176-37 chr2 180626832 180627372 + 0.5 NA Intergenic L2b|LINE|L2 -65002 NR_104324 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 157.5-10 chr10 89545021 89545414 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -9623 NM_213606 387700 Hs.530338 NM_213606 ENSG00000152779 SLC16A12 CJMG|CRT2|CTRCT47|MCT12 solute carrier family 16 member 12 protein-coding 174.5-20 chr12 30565123 30565635 + 0.5 NA Intergenic L2a|LINE|L2 111865 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 151-87 chr7 11785285 11785613 + 0.5 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 46749 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 167.25-74 chr8 14059868 14060355 + 0.5 NA Intergenic Intergenic 430421 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 162.5-36 chr18 21023433 21023907 + 0.5 NA exon (NM_005406, exon 11 of 33) exon (NM_005406, exon 11 of 33) 88143 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 169.75-62 chr5 105976036 105976454 + 0.5 NA Intergenic Intergenic 876771 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 155.5-8 chr10 41911007 41911587 + 0.5 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 456748 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 151-13 chr12 30276116 30276534 + 0.5 NA Intergenic L1MEc|LINE|L1 400919 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 145.75-73 chr3 41152645 41153109 + 0.5 NA Intergenic Intergenic -46628 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 195-35 chr4 80149328 80149784 + 0.5 NA Intergenic Arthur1B|DNA|hAT-Tip100 -35714 NM_020226 56978 Hs.373642 NM_020226 ENSG00000152784 PRDM8 EPM10|KMT8D|PFM5 PR/SET domain 8 protein-coding 146.75-112 chr7 97443946 97444359 + 0.5 NA Intergenic Intergenic -287934 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 165.25-53 chr5 41625361 41625942 + 0.5 NA Intergenic Intergenic -115050 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 157.75-4 chr1 105691207 105691632 + 0.5 NA Intergenic Intergenic -72484 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 163.5-100 chr6 50140659 50141209 + 0.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -91005 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 177.75-78 chr9 86961344 86961960 + 0.5 NA intron (NR_049794, intron 2 of 6) intron (NR_049794, intron 2 of 6) 12954 NR_049794 100506834 Hs.553987 NR_049794 ENSG00000226237 GAS1RR LncRNA-Hh GAS1 adjacent regulatory RNA ncRNA 155-107 chr8 115679271 115679766 + 0.5 NA Intergenic Intergenic -10543 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 200.75-26 chr2 80963331 80963895 + 0.5 NA Intergenic L1PA13|LINE|L1 503333 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 177-65 chr7 104112929 104113501 + 0.5 NA Intergenic L1MB7|LINE|L1 94798 NM_002553 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 240.25-16 chr3 120871046 120871628 + 0.5 NA Intergenic Intergenic -34980 NR_135571 101926983 Hs.553055 NR_135570 ENSG00000243593 LINC02049 - long intergenic non-protein coding RNA 2049 ncRNA 159.75-58 chr3 44080247 44080751 + 0.5 NA Intergenic Intergenic -33713 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 147.25-42 chr18 62806875 62807312 + 0.5 NA intron (NM_194449, intron 1 of 16) intron (NM_194449, intron 1 of 16) 91552 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 146-34 chr18 5859908 5860262 + 0.5 NA Intergenic L1MA2|LINE|L1 19390 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 153-18 chr13 65210159 65210751 + 0.5 NA Intergenic MLT1G|LTR|ERVL-MaLR -655592 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 151.25-22 chr13 47173186 47173698 + 0.5 NA Intergenic Intergenic -276366 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 173.5-24 chr14 70213141 70213549 + 0.5 NA intron (NR_135825, intron 2 of 3) intron (NR_135825, intron 2 of 3) -24275 NM_033262 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 148.75-24 chr14 26647482 26647879 + 0.5 NA intron (NR_147061, intron 2 of 6) MER129|LTR?|LTR? 49033 NR_147061 102725045 Hs.143441 NR_147061 LINC02588 C14orf22|NOVA1-AS1 long intergenic non-protein coding RNA 2588 ncRNA 149.25-67 chr3 134261312 134261756 + 0.5 NA Intergenic HAL1|LINE|L1 -10790 NM_001005861 6259 Hs.654562 NM_002958 ENSG00000163785 RYK D3S3195|JTK5|JTK5A|RYK1 receptor like tyrosine kinase protein-coding 221.75-22 chr2 82615757 82616512 + 0.5 NA Intergenic Intergenic -240669 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 164.25-61 chr3 170083671 170084298 + 0.5 NA exon (NM_014373, exon 4 of 4) exon (NM_014373, exon 4 of 4) 45989 NM_014373 26996 Hs.231320 NM_014373 ENSG00000173890 GPR160 GPCR1|GPCR150 G protein-coupled receptor 160 protein-coding 152.25-33 chr17 39087963 39088402 + 0.5 NA intron (NM_020405, intron 7 of 13) intron (NM_020405, intron 7 of 13) 31163 NR_036551 100131347 Hs.676510 NR_036551 ENSG00000263818 RDM1P5 - RDM1 pseudogene 5 pseudo 178.25-66 chr7 126230152 126230763 + 0.5 NA Intergenic Intergenic 827727 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 173-23 chr12 26363896 26364435 + 0.5 NA intron (NM_002223, intron 55 of 56) intron (NM_002223, intron 55 of 56) 168592 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 147.25-30 chr13 90186947 90187352 + 0.5 NA Intergenic Intergenic -44033 NR_030754 693207 NR_030754 ENSG00000283783 MIR622 MIRN622|hsa-mir-622 microRNA 622 ncRNA 378.5-3 chr18 33969634 33970629 + 0.5 NA intron (NM_001353232, intron 6 of 9) intron (NM_001353232, intron 6 of 9) 78481 NM_001353236 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 175.25-48 chr4 187582036 187582566 + 0.5 NA intron (NR_110436, intron 2 of 2) L1ME4c|LINE|L1 -76688 NR_038931 339975 Hs.639361 NR_038931 LOC339975 - uncharacterized LOC339975 ncRNA 146.5-6 chr1 178926116 178926526 + 0.5 NA Intergenic L1M3|LINE|L1 -55244 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 189.25-8 chr10 44531475 44532021 + 0.5 NA Intergenic L1MB5|LINE|L1 -146651 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 154-21 chr12 20064475 20064918 + 0.5 NA intron (NR_040098, intron 2 of 2) intron (NR_040098, intron 2 of 2) 50011 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 207-53 chr8 131458289 131458952 + 0.5 NA Intergenic MIRb|SINE|MIR -417711 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 164.5-38 chr2 204654886 204655438 + 0.5 NA intron (NM_205863, intron 1 of 21) intron (NM_205863, intron 1 of 21) 109687 NM_205863 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 169-8 chr10 107797705 107798301 + 0.5 NA Intergenic Intergenic 271290 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 162-45 chr22 46454148 46454637 + 0.5 NA intron (NM_014246, intron 2 of 34) intron (NM_014246, intron 2 of 34) 83228 NM_014246 9620 Hs.252387 NM_014246 ENSG00000075275 CELSR1 ADGRC1|CDHF9|FMI2|HFMI2|ME2 cadherin EGF LAG seven-pass G-type receptor 1 protein-coding 171.75-92 chr9 10517103 10517689 + 0.5 NA intron (NM_002839, intron 2 of 45) L1MB1|LINE|L1 95606 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 157.75-53 chr2 163929505 163929967 + 0.5 NA Intergenic Intergenic -193728 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 237.5-11 chr17 79643172 79643692 + 0.5 NA Intergenic L1MEf|LINE|L1 -32381 NM_001350453 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 161.5-20 chr11 40489986 40490438 + 0.5 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -197082 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 169.25-8 chr12 27476080 27476604 + 0.5 NA intron (NM_001145010, intron 5 of 8) L1M2|LINE|L1 9532 NM_001145010 341346 Hs.282121 NM_001145010 ENSG00000165935 SMCO2 C12orf70 single-pass membrane protein with coiled-coil domains 2 protein-coding 157.5-86 chr6 9916008 9916614 + 0.5 NA Intergenic AluSx|SINE|Alu -488191 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 187.5-68 chr8 112314161 112314895 + 0.5 NA exon (NM_198124, exon 49 of 72) exon (NM_198124, exon 49 of 72) -328965 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 173-41 chr20 9978807 9979440 + 0.5 NA Intergenic THE1C|LTR|ERVL-MaLR -7210 NR_109861 101929371 Hs.619265 NR_109861 PARAL1 - PPARG activating RBM14 associated lncRNA 1 ncRNA 209-12 chr12 29858131 29858831 + 0.5 NA Intergenic Intergenic -73722 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 147.25-70 chr5 45370104 45370562 + 0.5 NA intron (NM_021072, intron 4 of 7) intron (NM_021072, intron 4 of 7) 326047 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 153.25-74 chr22 34412859 34413391 + 0.5 NA Intergenic L1MA9|LINE|L1 -490237 NM_001362951 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 171.5-19 chr11 31396808 31397307 + 0.5 NA intron (NM_181706, intron 2 of 4) L2c|LINE|L2 27197 NM_181706 120526 Hs.187269 NM_181706 ENSG00000170946 DNAJC24 DPH4|JJJ3|ZCSL3 DnaJ heat shock protein family (Hsp40) member C24 protein-coding 182.75-51 chr4 146956510 146957036 + 0.5 NA Intergenic LTR16B2|LTR|ERVL -10887 NM_031956 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 172-12 chr10 44022424 44022939 + 0.5 NA Intergenic Intergenic 110279 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 156.25-52 chr22 26740906 26741524 + 0.5 NA intron (NR_110543, intron 2 of 5) intron (NR_110543, intron 2 of 5) 68372 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 149.5-68 chr4 126639540 126639881 + 0.5 NA Intergenic Intergenic -993247 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 155.75-58 chr2 177417052 177417463 + 0.5 NA intron (NM_003659, intron 1 of 19) Tigger4b|DNA|TcMar-Tigger 24484 NM_003659 8540 Hs.516543 NM_003659 ENSG00000018510 AGPS ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY|RCDP3 alkylglycerone phosphate synthase protein-coding 189.75-67 chr6 139911687 139912199 + 0.5 NA Intergenic MER30|DNA|hAT-Charlie 57093 NR_138541 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 191-48 chr7 124035132 124035599 + 0.5 NA Intergenic Charlie7a|DNA|hAT-Charlie -2298 NM_001136002 730130 Hs.450249 NM_001136002 ENSG00000234224 TMEM229A - transmembrane protein 229A protein-coding 145.75-81 chr3 114436305 114436755 + 0.5 NA intron (NM_001348805, intron 7 of 10) intron (NM_001348805, intron 7 of 10) -17063 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 156.5-70 chr4 36095599 36095926 + 0.5 NA intron (NR_146894, intron 27 of 32) L2|LINE|L2 148177 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 213.5-20 chr16 79671582 79672072 + 0.5 NA Intergenic Intergenic -71090 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 159.25-24 chr15 59636718 59637118 + 0.5 NA Intergenic Intergenic 20387 NM_001320929 2958 Hs.512934 NM_004492 ENSG00000140307 GTF2A2 HsT18745|T18745|TF2A2|TFIIA|TFIIA-12|TFIIA-gamma|TFIIAS general transcription factor IIA subunit 2 protein-coding 160-51 chr3 47241027 47241374 + 0.5 NA intron (NM_022342, intron 15 of 19) intron (NM_022342, intron 15 of 19) 9409 NR_145712 109617025 NR_145712 SNORD13J - small nucleolar RNA, C/D box 13J snoRNA 162-81 chr8 142320445 142320901 + 0.5 NA intron (NM_001366903, intron 6 of 9) intron (NM_001366903, intron 6 of 9) 82509 NM_145003 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 188-30 chr2 56563440 56563893 + 0.5 NA Intergenic HAL1|LINE|L1 -377896 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 146.75-89 chr5 94399040 94399559 + 0.5 NA intron (NM_001145678, intron 16 of 20) intron (NM_001145678, intron 16 of 20) 219305 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 157.5-37 chr16 59193209 59193546 + 0.5 NA Intergenic Intergenic -459061 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 159.5-78 chr5 106199294 106199791 + 0.5 NA Intergenic L1MCa|LINE|L1 811472 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 157-24 chr11 105355626 105356130 + 0.5 NA Intergenic Intergenic -216109 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 166.75-95 chr8 120028734 120029377 + 0.5 NA intron (NM_022783, intron 8 of 8) AluSq2|SINE|Alu -96047 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 170.75-63 chr7 7315635 7316207 + 0.5 NA Intergenic Intergenic 60767 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 224.25-18 chr2 40249378 40249986 + 0.5 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 180622 NM_021097 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 160-30 chr17 69970170 69970661 + 0.5 NA intron (NR_110875, intron 2 of 4) intron (NR_110875, intron 2 of 4) 8708 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 147.75-52 chr2 43197772 43198324 + 0.5 NA Intergenic AluSq2|SINE|Alu 28558 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein like 2 protein-coding 151.25-63 chr3 158846890 158847420 + 0.5 NA Intergenic Intergenic 45101 NM_001289406 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 160-23 chr15 89347545 89348150 + 0.5 NA Intergenic Intergenic -13023 NM_001126131 5428 Hs.706868 NM_002693 ENSG00000140521 POLG MDP1|MIRAS|MTDPS4A|MTDPS4B|PEO|POLG1|POLGA|SANDO|SCAE DNA polymerase gamma, catalytic subunit protein-coding 195.5-59 chr6 73014896 73015401 + 0.5 NA intron (NM_001160132, intron 2 of 13) (ATGAGAA)n|Simple_repeat|Simple_repeat -47395 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 149-44 chr2 84933659 84934188 + 0.5 NA Intergenic L1MCa|LINE|L1 28267 NM_021103 9168 Hs.446574 NM_021103 ENSG00000034510 TMSB10 MIG12|TB10 thymosin beta 10 protein-coding 147.75-84 chr5 12464586 12464954 + 0.5 NA Intergenic Intergenic -110087 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 202-15 chr16 89108886 89109383 + 0.5 NA intron (NR_104293, intron 4 of 10) AluSz|SINE|Alu 15282 NM_174917 197322 Hs.461727 NM_174917 ENSG00000176715 ACSF3 - acyl-CoA synthetase family member 3 protein-coding 161.5-66 chr4 44652109 44652566 + 0.5 NA promoter-TSS (NM_182592) promoter-TSS (NM_182592) -696 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 157-16 chr10 82704799 82705221 + 0.5 NA intron (NR_163253, intron 3 of 10) HAL1ME|LINE|L1 -472090 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 198.5-3 chr1 96462921 96463644 + 0.5 NA Intergenic MIR3|SINE|MIR -89157 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 216.5-30 chr4 154840155 154840909 + 0.5 NA Intergenic L1MB2|LINE|L1 59027 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 167.5-63 chr4 27747052 27747632 + 0.5 NA Intergenic L1MCc|LINE|L1 529863 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 149.25-65 chr3 89523578 89524094 + 0.5 NA Intergenic Intergenic 416215 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 181.25-20 chr18 5880992 5881628 + 0.5 NA Intergenic Intergenic 14644 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 161.25-39 chr2 146030430 146030941 + 0.5 NA Intergenic L1ME3D|LINE|L1 -556372 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 168.75-74 chr4 63865968 63866436 + 0.5 NA Intergenic Intergenic 543248 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 148.75-96 chr7 49914090 49914471 + 0.5 NA 3' UTR (NM_198570, exon 4 of 4) 3' UTR (NM_198570, exon 4 of 4) 138947 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 153-84 chr7 43193845 43194333 + 0.5 NA intron (NM_015052, intron 2 of 29) MER4D0|LTR|ERV1 43194 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 173.5-19 chr12 129404374 129404902 + 0.5 NA intron (NM_133448, intron 3 of 8) MSTB|LTR|ERVL-MaLR 196037 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 176-65 chr8 4917696 4918320 + 0.5 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 76906 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 166.75-40 chr2 51817021 51817585 + 0.5 NA intron (NR_135237, intron 6 of 10) intron (NR_135237, intron 6 of 10) -553345 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 177.5-22 chr15 87667375 87667915 + 0.5 NA Intergenic HUERS-P1-int|LTR|ERV1 90716 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 188.5-15 chr12 1419927 1420597 + 0.5 NA intron (NR_027948, intron 18 of 19) intron (NR_027948, intron 18 of 19) -80229 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 173.25-17 chr12 15022815 15023340 + 0.5 NA Intergenic L1MD1|LINE|L1 21244 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 206-5 chr10 52928690 52929174 + 0.5 NA Intergenic Intergenic -157232 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 222-3 chr10 72411440 72412083 + 0.5 NA intron (NM_001195519, intron 4 of 6) intron (NM_001195519, intron 4 of 6) -56842 NM_001365080 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 220-34 chr8 124107374 124108049 + 0.5 NA intron (NM_001039112, intron 39 of 40) intron (NM_001039112, intron 39 of 40) 63811 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 147.5-69 chr4 69982200 69982636 + 0.5 NA Intergenic Intergenic -13548 NM_001009181 6779 Hs.654495 NM_003154 ENSG00000126549 STATH STR statherin protein-coding 183.75-30 chr14 73821048 73821629 + 0.5 NA Intergenic AluJb|SINE|Alu 8797 NR_135238 100506498 Hs.569330 NR_135238 ENSG00000258586 LINC02274 - long intergenic non-protein coding RNA 2274 ncRNA 170-30 chr2 34735280 34735770 + 0.5 NA Intergenic Intergenic 57968 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 165.75-5 chr1 69574922 69575357 + 0.5 NA intron (NM_001366842, intron 1 of 7) MIR3|SINE|MIR 5798 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 149-57 chr22 33649469 33649896 + 0.5 NA intron (NM_133642, intron 3 of 14) intron (NM_133642, intron 3 of 14) 55238 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 239.25-21 chr5 87961336 87962232 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 299742 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 166.75-97 chr9 32529442 32529855 + 0.5 NA Intergenic MER57E2|LTR|ERV1 -3452 NM_014314 23586 Hs.190622 NM_014314 ENSG00000107201 DDX58 RIG-I|RIG1|RIGI|RLR-1|SGMRT2 DExD/H-box helicase 58 protein-coding 280.25-11 chr6 133912851 133913805 + 0.5 NA Intergenic L1MDa|LINE|L1 24206 NM_003206 6943 Hs.78061 NM_003206 ENSG00000118526 TCF21 POD1|bHLHa23 transcription factor 21 protein-coding 154-110 chr9 9311856 9312430 + 0.5 NA intron (NM_002839, intron 9 of 45) MIRc|SINE|MIR 454125 NR_121599 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 203.5-73 chr8 120331857 120332393 + 0.5 NA intron (NM_021110, intron 40 of 47) intron (NM_021110, intron 40 of 47) 113025 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 239.75-16 chr2 211116594 211117312 + 0.5 NA Intergenic Intergenic 499382 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 154.5-57 chr3 6058418 6058817 + 0.5 NA Intergenic Intergenic 746832 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 148-75 chr5 112977526 112977890 + 0.5 NA intron (NR_038352, intron 1 of 8) intron (NR_038352, intron 1 of 8) 910 NM_001242377 167227 Hs.443875 NM_152624 ENSG00000172795 DCP2 NUDT20 decapping mRNA 2 protein-coding 169-32 chr2 18388714 18389336 + 0.5 NA Intergenic Intergenic 171628 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 159.75-98 chr8 133839179 133839712 + 0.5 NA Intergenic AluY|SINE|Alu -47051 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 154.75-51 chr2 185721075 185721519 + 0.5 NA intron (NR_110217, intron 2 of 2) Tigger3b|DNA|TcMar-Tigger 17422 NR_110216 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 152-71 chr5 43456645 43457113 + 0.5 NA intron (NM_022483, intron 1 of 2) L1ME1|LINE|L1 26986 NM_022483 64417 Hs.732093 NM_022483 ENSG00000151881 TMEM267 C5orf28 transmembrane protein 267 protein-coding 230-2 chr10 64852896 64853808 + 0.5 NA Intergenic Intergenic 27824 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 217 chr1 73818947 73819436 + 0.5 NA Intergenic Intergenic 144512 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 223.75-13 chr18 14102827 14103624 + 0.5 NA 3' UTR (NM_145287, exon 3 of 3) 3' UTR (NM_145287, exon 3 of 3) 29210 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 157-59 chr3 23100903 23101316 + 0.5 NA Intergenic L3|LINE|CR1 101469 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 151.5-108 chr9 81677866 81678440 + 0.5 NA intron (NM_005077, intron 4 of 19) intron (NM_005077, intron 4 of 19) 11382 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 164.5-94 chr8 86762040 86762536 + 0.5 NA Intergenic MER68|LTR|ERVL -18613 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 169-17 chr14 49917910 49918399 + 0.5 NA Intergenic Intergenic 25072 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 185.25-63 chr4_GL000008v2_random 1147 1684 + 0.5 NA Intergenic Intergenic 176756 NR_046228 100874392 Hs.648245 NR_046228 ANKRD20A12P - ankyrin repeat domain 20 family member A12, pseudogene pseudo 168.25-5 chr10 12230695 12231176 + 0.5 NA intron (NM_006023, intron 6 of 12) intron (NM_006023, intron 6 of 12) 34747 NM_006023 8872 Hs.412842 NM_006023 ENSG00000151465 CDC123 C10orf7|D123 cell division cycle 123 protein-coding 145.75-58 chr2 144260627 144261091 + 0.5 NA intron (NM_001354354, intron 1 of 12) intron (NM_001354354, intron 1 of 12) -12160 NR_148872 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 185-47 chr3 137425553 137426058 + 0.5 NA Intergenic L1ME1|LINE|L1 -338510 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 171.25-33 chr2 77932480 77932975 + 0.5 NA intron (NR_110288, intron 1 of 3) L1PA8|LINE|L1 16793 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 180.25-74 chr8 72186622 72187252 + 0.5 NA Intergenic L1PA8|LINE|L1 64697 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 211.25-24 chr2 196668934 196669410 + 0.5 NA intron (NM_001080539, intron 7 of 27) L2c|LINE|L2 29457 NM_001353339 284992 Hs.132519 NM_173466 ENSG00000144395 CCDC150 - coiled-coil domain containing 150 protein-coding 146.75-83 chr4 131304421 131304760 + 0.5 NA Intergenic L1PB4|LINE|L1 -460248 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 203.5-49 chr4 64475122 64475778 + 0.5 NA Intergenic Intergenic -65990 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 177.25-56 chr5 44667092 44667666 + 0.5 NA Intergenic Intergenic 141414 NR_109864 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 159.75-66 chr3 133689368 133689795 + 0.5 NA intron (NM_001354703, intron 2 of 22) L1M5|LINE|L1 27583 NM_001354703 7018 Hs.518267 NM_001063 ENSG00000091513 TF HEL-S-71p|PRO1557|PRO2086|TFQTL1 transferrin protein-coding 333.75-2 chr2 95067510 95068509 + 0.5 NA Intergenic AluSp|SINE|Alu 42301 NM_002371 4118 Hs.80395 NM_002371 ENSG00000172005 MAL MVP17|VIP17 mal, T cell differentiation protein protein-coding 173.25-10 chr11 79402873 79403343 + 0.5 NA promoter-TSS (NR_030598) promoter-TSS (NR_030598) -999 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 154.25-7 chr10 24629648 24630017 + 0.5 NA intron (NM_001367452, intron 4 of 22) intron (NM_001367452, intron 4 of 22) -6989 NM_001367455 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 252.25-2 chr11 17532362 17533054 + 0.5 NA intron (NR_123738, intron 2 of 19) L2c|LINE|L2 11708 NR_123738 10083 Hs.502072 NM_005709 ENSG00000006611 USH1C AIE-75|DFNB18|DFNB18A|NY-CO-37|NY-CO-38|PDZ-45|PDZ-73|PDZ-73/NY-CO-38|PDZ73|PDZD7C|ush1cpst USH1 protein network component harmonin protein-coding 167.5-21 chr14 45183050 45183418 + 0.5 NA intron (NM_001308133, intron 15 of 21) intron (NM_001308133, intron 15 of 21) 47295 NM_001308134 57697 Hs.509229 NM_020937 ENSG00000187790 FANCM FAAP250|KIAA1596|POF15|SPGF28 FA complementation group M protein-coding 199.25-26 chr17 59469075 59469824 + 0.5 NA intron (NR_110813, intron 2 of 2) Tigger5b|DNA|TcMar-Tigger 57408 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 210.5-8 chr10 106265400 106265993 + 0.5 NA Intergenic Intergenic 125531 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 161-20 chr11 115255967 115256492 + 0.5 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -77348 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 249.75-14 chr4 85186469 85187000 + 0.5 NA Intergenic THE1D|LTR|ERVL-MaLR 219250 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 177.5-21 chr15 27412273 27412773 + 0.5 NA intron (NM_001270873, intron 5 of 5) intron (NM_001270873, intron 5 of 5) -251204 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 182-11 chr11 39144910 39145331 + 0.5 NA Intergenic Intergenic 496262 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 158.25-42 chr15 86796826 86797229 + 0.5 NA intron (NM_152336, intron 23 of 24) MIRb|SINE|MIR -135853 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 148-38 chr17 58733142 58733712 + 0.5 NA intron (NM_058216, intron 8 of 8) intron (NM_058216, intron 8 of 8) -22427 NM_014906 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 216.5-13 chr16 65850430 65850928 + 0.5 NA Intergenic Intergenic -274379 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 247.25-22 chr8 19133515 19134311 + 0.5 NA Intergenic Intergenic 111609 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 192.5-16 chr15 57936594 57937138 + 0.5 NA Intergenic L1PREC2|LINE|L1 77157 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 151.25-4 chr1 227673509 227674081 + 0.5 NA intron (NR_102302, intron 5 of 5) intron (NR_102302, intron 5 of 5) 23912 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 209-46 chr8 124693087 124693821 + 0.5 NA intron (NM_001282971, intron 3 of 14) MER5A|DNA|hAT-Charlie 35019 NM_001363294 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 176.5-18 chr14 45678295 45678924 + 0.5 NA Intergenic Intergenic 36993 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 198.5-56 chr8 113822259 113822977 + 0.5 NA Intergenic Intergenic -385679 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 177.75-73 chr8 67971377 67972022 + 0.5 NA intron (NM_024870, intron 1 of 39) intron (NM_024870, intron 1 of 39) 19653 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 162-84 chr9 70382625 70383223 + 0.5 NA Intergenic L2a|LINE|L2 31733 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 153.75-7 chr11 55781676 55782289 + 0.5 NA Intergenic L1PA15-16|LINE|L1 8544 NM_001001967 390142 Hs.553743 NM_001001967 ENSG00000279761 OR5D13 - olfactory receptor family 5 subfamily D member 13 (gene/pseudogene) protein-coding 175.5-37 chr17 69881543 69882084 + 0.5 NA intron (NR_109971, intron 5 of 5) intron (NR_109971, intron 5 of 5) -79894 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 170.5-42 chr20 21876737 21877147 + 0.5 NA Intergenic Intergenic 171278 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 159.5-9 chr10 44603445 44603961 + 0.5 NA Intergenic L1ME3|LINE|L1 -218606 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 162.25-46 chr20 54196581 54197023 + 0.5 NA Intergenic Intergenic -11285 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 163-66 chr5 85911020 85911448 + 0.5 NA Intergenic L1PA15-16|LINE|L1 -371210 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 151.25-101 chr8 134059506 134059973 + 0.5 NA Intergenic L1MA7|LINE|L1 173243 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 172.25-25 chr14 64755770 64756191 + 0.5 NA intron (NM_001024858, intron 31 of 34) LTR60B|LTR|ERV1 29706 NR_107009 102465841 NR_107009 ENSG00000284269 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 228.5-43 chr7 3441865 3442357 + 0.5 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 140859 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 178-13 chr11 110163866 110164338 + 0.5 NA intron (NM_033390, intron 5 of 5) AluSz6|SINE|Alu 70710 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 194.5-56 chr8 75016538 75017083 + 0.5 NA intron (NM_031461, intron 7 of 14) intron (NM_031461, intron 7 of 14) 16655 NM_001286777 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 155.5-13 chr10 126911331 126911821 + 0.5 NA intron (NM_001290223, intron 1 of 51) intron (NM_001290223, intron 1 of 51) 6167 NM_001380 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 223.25-31 chr7 116139850 116140633 + 0.5 NA Intergenic Intergenic -70298 NM_015641 26136 Hs.592286 NM_015641 ENSG00000135269 TES TESS|TESS-2 testin LIM domain protein protein-coding 193.25-40 chr3 145411298 145411903 + 0.5 NA Intergenic L1PB2|LINE|L1 657585 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 163-24 chr12 34417098 34417584 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 394845 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 160-60 chr4 48791610 48792122 + 0.5 NA Intergenic Intergenic -11567 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 147.5-45 chr2 117048728 117049119 + 0.5 NA Intergenic Intergenic -765768 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 159.5-3 chr1 57136673 57137169 + 0.5 NA intron (NM_001365793, intron 3 of 14) intron (NM_001365793, intron 3 of 14) -170781 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 202-21 chr2 105332170 105332754 + 0.5 NA Intergenic Intergenic -2727 NM_001142621 9392 Hs.446350 NM_004257 ENSG00000135966 TGFBRAP1 TRAP-1|TRAP1|VPS3 transforming growth factor beta receptor associated protein 1 protein-coding 197.25-32 chr20 53832920 53833627 + 0.5 NA Intergenic LTR47A|LTR|ERVL 42436 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 197.5-29 chr2 24607704 24608247 + 0.5 NA intron (NM_001362950, intron 3 of 23) intron (NM_001362950, intron 3 of 23) 23498 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 173-7 chr1 99059123 99059562 + 0.5 NA intron (NR_033940, intron 1 of 2) intron (NR_033940, intron 1 of 2) -54481 NM_001010861 163404 Hs.483948 NM_001010861 ENSG00000117598 PLPPR5 LPPR5|PAP2|PAP2D|PRG5 phospholipid phosphatase related 5 protein-coding 165.75-30 chr13 64792862 64793222 + 0.5 NA Intergenic Intergenic -717031 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 153.75-44 chr3 98332222 98332758 + 0.5 NA Intergenic L2|LINE|L2 -21364 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 172.75-27 chr16 3682926 3683381 + 0.5 NA intron (NM_001272049, intron 3 of 16) AluSp|SINE|Alu 28449 NM_001351825 1773 Hs.629638 NM_005223 ENSG00000213918 DNASE1 DNL1|DRNI deoxyribonuclease 1 protein-coding 149.75-39 chr2 122864884 122865307 + 0.5 NA Intergenic Intergenic 208386 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 189-50 chr5 123079494 123080132 + 0.5 NA Intergenic MER63B|DNA|hAT-Blackjack -9428 NM_001136239 93166 Hs.135118 NM_001136239 ENSG00000061455 PRDM6 KMT8C|PDA3|PRISM PR/SET domain 6 protein-coding 149.75-40 chr2 163551676 163552054 + 0.5 NA Intergenic Intergenic 184143 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 155-55 chr3 69749441 69749946 + 0.5 NA intron (NM_001354605, intron 1 of 9) intron (NM_001354605, intron 1 of 9) 10229 NM_001354607 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 155-26 chr13 111363062 111363529 + 0.5 NA Intergenic Intergenic 42653 NM_152324 121793 Hs.210677 NM_152324 ENSG00000153495 TEX29 C13orf16|bA474D23.1 testis expressed 29 protein-coding 179-4 chr10 82540324 82540906 + 0.5 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -307695 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 152-30 chr18 65747923 65748366 + 0.5 NA Intergenic Intergenic -2108 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 159.75-64 chr3 102430839 102431442 + 0.5 NA Intergenic Intergenic -3875 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 252.75-12 chr18 69709156 69710128 + 0.5 NA intron (NM_152721, intron 5 of 7) intron (NM_152721, intron 5 of 7) 238231 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 204-18 chr17 70990834 70991334 + 0.5 NA Intergenic AluSz|SINE|Alu 211095 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 169-59 chr6 130009678 130010143 + 0.5 NA Intergenic L2c|LINE|L2 -8459 NM_032438 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 151.5-103 chr8 138477630 138478074 + 0.5 NA intron (NM_001362965, intron 1 of 19) MLT1J|LTR|ERVL-MaLR 19409 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 232.5-17 chr18 61863752 61864268 + 0.5 NA intron (NM_173557, intron 1 of 1) intron (NM_173557, intron 1 of 1) 28997 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 177.5-31 chr2 149381673 149382197 + 0.5 NA intron (NM_194317, intron 1 of 4) intron (NM_194317, intron 1 of 4) 51348 NM_194317 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 206.5-44 chr7 51285409 51285843 + 0.5 NA intron (NM_015198, intron 1 of 12) L1PA16|LINE|L1 31183 NM_015198 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 177.25-37 chr2 68729854 68730316 + 0.5 NA Intergenic L1ME4a|LINE|L1 -4726 NM_001007231 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 166.25-57 chr6 147667675 147668159 + 0.5 NA Intergenic Intergenic 159227 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 170-50 chr5 93997167 93997845 + 0.5 NA intron (NR_028080, intron 3 of 8) intron (NR_028080, intron 3 of 8) 114157 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 156.75-38 chr15 57652793 57653234 + 0.5 NA intron (NR_104367, intron 11 of 15) Charlie19a|DNA|hAT-Charlie -53508 NM_001018102 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 167-10 chr11 24173579 24174124 + 0.5 NA Intergenic MER61B|LTR|ERV1 -323202 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 215.25-3 chr1 181789051 181789716 + 0.5 NA intron (NM_001205293, intron 43 of 47) intron (NM_001205293, intron 43 of 47) 272329 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 191.5-23 chr16 9546882 9547459 + 0.5 NA Intergenic Intergenic -91665 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 196.5-65 chrX 55034969 55035493 + 0.5 NA Intergenic Intergenic -4254 NM_000032 212 Hs.522666 NM_000032 ENSG00000158578 ALAS2 ALAS-E|ALASE|ANH1|ASB|SIDBA1|XLDPP|XLEPP|XLSA 5'-aminolevulinate synthase 2 protein-coding 147.5-57 chr3 7489695 7490119 + 0.5 NA intron (NM_000844, intron 7 of 9) intron (NM_000844, intron 7 of 9) 45377 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 166.5-49 chr3 30731757 30732272 + 0.5 NA intron (NM_207359, intron 14 of 14) intron (NM_207359, intron 14 of 14) 125413 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 215.5-42 chr6 50852542 50853048 + 0.5 NA Intergenic Intergenic 33924 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 231.75-32 chrX 84720036 84720694 + 0.5 NA Intergenic L1M1|LINE|L1 -213786 NR_024062 100131816 Hs.460809 NM_178567 ENSG00000229547 UBE2DNL - ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) pseudo 157.25-59 chr21 14525263 14525727 + 0.5 NA intron (NM_001286523, intron 1 of 8) L1MC5|LINE|L1 20820 NM_022136 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 184.25-66 chr9 95881311 95881819 + 0.5 NA intron (NM_020207, intron 2 of 18) intron (NM_020207, intron 2 of 18) 5557 NM_001010895 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 149 chr1 46995713 46996195 + 0.5 NA intron (NM_001320289, intron 1 of 11) intron (NM_001320289, intron 1 of 11) -8232 NM_001320290 260293 Hs.439760 NM_178033 ENSG00000186377 CYP4X1 CYPIVX1 cytochrome P450 family 4 subfamily X member 1 protein-coding 188.75-26 chr18 34850550 34850995 + 0.5 NA intron (NM_032980, intron 5 of 13) L1MC|LINE|L1 32391 NM_032980 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 191.5-4 chr1 147157728 147158232 + 0.5 NA non-coding (NR_103871, exon 7 of 7) non-coding (NR_103871, exon 7 of 7) 14490 NM_005399 5565 Hs.50732 NM_005399 ENSG00000131791 PRKAB2 - protein kinase AMP-activated non-catalytic subunit beta 2 protein-coding 153-71 chr4 180413687 180414146 + 0.5 NA Intergenic Intergenic 745233 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 167-13 chr11 87818056 87818492 + 0.5 NA Intergenic Intergenic -98863 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 148.75-22 chr13 26033878 26034354 + 0.5 NA Intergenic Intergenic 16944 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 203-25 chr20 39773301 39773971 + 0.5 NA Intergenic Intergenic -230825 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 185.75-86 chr8 116931857 116932569 + 0.5 NA Intergenic AluY|SINE|Alu -5994 NM_001025357 441376 Hs.437551 NM_001025357 ENSG00000205002 AARD C8orf85 alanine and arginine rich domain containing protein protein-coding 192.5-48 chr5 117630022 117630471 + 0.5 NA Intergenic L1MA5|LINE|L1 -100115 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 222.25-29 chr4 64414497 64415160 + 0.5 NA Intergenic Ricksha_c|DNA|MULE-MuDR -5368 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 155.5-63 chr3 88966183 88966758 + 0.5 NA Intergenic Intergenic -141151 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 163-86 chr8 125578694 125579336 + 0.5 NA Intergenic Intergenic 146806 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 184.25-14 chr11 66158802 66159319 + 0.5 NA intron (NM_018026, intron 1 of 23) HAL1|LINE|L1 88788 NM_018026 55690 Hs.644326 NM_018026 ENSG00000175115 PACS1 MRD17|SHMS phosphofurin acidic cluster sorting protein 1 protein-coding 158.25-87 chr5 73315634 73316194 + 0.5 NA Intergenic AluJr|SINE|Alu -21992 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 149-86 chr5 155712684 155713102 + 0.5 NA Intergenic Intergenic -613864 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 183-17 chr14 83914384 83914946 + 0.5 NA Intergenic Intergenic 1272033 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 196-34 chr4 31100029 31100690 + 0.5 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -70785 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 200.75-33 chr21 22939739 22940301 + 0.5 NA Intergenic Intergenic -139264 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 235-19 chr7 39791664 39792242 + 0.5 NA non-coding (NR_026999, exon 12 of 12) non-coding (NR_026999, exon 12 of 12) 58385 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 152.5-78 chr4 41503894 41504375 + 0.5 NA intron (NM_001289122, intron 2 of 25) intron (NM_001289122, intron 2 of 25) -34023 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 167.5-62 chr3 158665072 158665579 + 0.5 NA intron (NM_001308164, intron 12 of 18) intron (NM_001308164, intron 12 of 18) 7323 NM_020169 56925 Hs.478067 NM_020169 ENSG00000079257 LXN ECI|TCI latexin protein-coding 163-21 chr11 91621791 91622202 + 0.5 NA Intergenic Intergenic -603038 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 183-51 chr7 115722669 115723338 + 0.5 NA Intergenic Intergenic -141562 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 159.75-84 chr6 42830541 42831108 + 0.5 NA intron (NM_001318819, intron 7 of 13) AluJo|SINE|Alu 9768 NM_015349 23506 Hs.658033 NM_015349 ENSG00000112624 BICRAL GLTSCR1L|KIAA0240 BRD4 interacting chromatin remodeling complex associated protein like protein-coding 178-40 chr2 222661537 222662157 + 0.5 NA Intergenic Intergenic -5755 NR_130154 10056 Hs.471452 NM_005687 ENSG00000116120 FARSB FARSLB|FRSB|HSPC173|NEDBLLA|PheHB|PheRS|RILDBC phenylalanyl-tRNA synthetase subunit beta protein-coding 176.75-18 chr12 45468436 45468869 + 0.5 NA Intergenic Intergenic 175962 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 189.25-57 chr9 72319549 72320014 + 0.5 NA intron (NR_110952, intron 2 of 4) MLT1B|LTR|ERVL-MaLR 14345 NR_110952 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 148.25-62 chr4 42723611 42723964 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -66682 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 203.5-72 chr8 119747272 119747958 + 0.5 NA intron (NM_003184, intron 22 of 25) intron (NM_003184, intron 22 of 25) -74225 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 153.25-110 chr8 59163068 59163588 + 0.5 NA Intergenic Intergenic 44118 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 190-41 chr4 30552916 30553471 + 0.5 NA Intergenic Intergenic -167176 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 164.75-2 chr1 13718403 13718851 + 0.5 NA intron (NM_012231, intron 2 of 9) intron (NM_012231, intron 2 of 9) 13772 NM_012231 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 178.25-41 chr3 142890558 142891024 + 0.5 NA Intergenic Intergenic -1708 NM_013363 26577 Hs.8944 NM_013363 ENSG00000163710 PCOLCE2 PCPE2 procollagen C-endopeptidase enhancer 2 protein-coding 158.5-106 chrX 80705850 80706220 + 0.5 NA intron (NM_153252, intron 22 of 40) Tigger3b|DNA|TcMar-Tigger 103842 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 160-42 chr2 68477682 68478068 + 0.5 NA intron (NM_173545, intron 1 of 9) THE1B|LTR|ERVL-MaLR 10290 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 252.5-3 chr10 34114822 34115645 + 0.5 NA intron (NM_001184789, intron 22 of 22) intron (NM_001184789, intron 22 of 22) -342553 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 153-72 chr5 37058933 37059326 + 0.5 NA exon (NM_133433, exon 44 of 47) exon (NM_133433, exon 44 of 47) 182360 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 150.75-35 chr2 6477331 6477854 + 0.5 NA Intergenic Intergenic -102170 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 167.5-46 chr2 150663601 150664074 + 0.5 NA Intergenic Intergenic 34940 NR_110247 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 203-35 chr5 18828818 18829309 + 0.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR 1021789 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 176.75-76 chr6 75929960 75930368 + 0.5 NA intron (NM_001563, intron 15 of 16) intron (NM_001563, intron 15 of 16) 142498 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 184.75-75 chr8 56836866 56837475 + 0.5 NA Intergenic Intergenic 156697 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 169.25-38 chr4 43369082 43369665 + 0.5 NA Intergenic Intergenic 123170 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 158.25-65 chr3 88432640 88433163 + 0.5 NA intron (NM_001368168, intron 2 of 2) L1M5|LINE|L1 94445 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 177-50 chr5 40909710 40910315 + 0.5 NA intron (NM_000587, intron 1 of 17) intron (NM_000587, intron 1 of 17) 515 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 169.25-49 chr5 115960242 115960776 + 0.5 NA Intergenic Intergenic -1966 NM_173800 206338 Hs.98288 NM_173800 ENSG00000172901 LVRN APQ|AQPEP|TAQPEP laeverin protein-coding 162.75-14 chr11 39367409 39367980 + 0.5 NA Intergenic Intergenic 718836 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 171.5-8 chr1 186429656 186430118 + 0.5 NA Intergenic Intergenic -5274 NR_126002 102724919 Hs.576493 NR_126002 ENSG00000229739 LOC102724919 - uncharacterized LOC102724919 ncRNA 147.75-20 chr11 22818114 22818537 + 0.5 NA TTS (NM_148893) TTS (NM_148893) 11054 NR_135213 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 146.5-99 chr7 116002102 116002544 + 0.5 NA intron (NM_012252, intron 1 of 7) L1MA3|LINE|L1 28440 NM_001018058 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 166.75-62 chr4 47361714 47362155 + 0.5 NA intron (NM_000812, intron 5 of 8) L2|LINE|L2 101768 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 154.5-15 chr11 17591293 17591691 + 0.5 NA exon (NM_001292063, exon 25 of 56) exon (NM_001292063, exon 25 of 56) 44119 NM_001277269 340990 Hs.688380 NM_198497 ENSG00000188162 OTOG DFNB18B|MLEMP|OTGN otogelin protein-coding 174.5-8 chr1 166655958 166656385 + 0.5 NA Intergenic Intergenic 52255 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 215.5-33 chr22 17666615 17667360 + 0.5 NA intron (NR_073068, intron 2 of 4) L1MA1|LINE|L1 11325 NR_073069 23786 Hs.631672 NM_015367 ENSG00000099968 BCL2L13 BCL-RAMBO|Bcl2-L-13|MIL1 BCL2 like 13 protein-coding 264.5-14 chr2 55395161 55396015 + 0.5 NA intron (NM_001254943, intron 2 of 33) L2c|LINE|L2 24268 NM_001135597 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL coiled-coil domain containing 88A protein-coding 165.25-4 chr10 8496359 8496979 + 0.5 NA Intergenic Intergenic 97722 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 147.75-103 chr7 86870450 86870954 + 0.5 NA Intergenic L1MA7|LINE|L1 95197 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 161.5-49 chr2 102510201 102510634 + 0.5 NA intron (NM_001011552, intron 6 of 11) MLT2C1|LTR|ERVL 37191 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 156.5-100 chr7 4542897 4543382 + 0.5 NA Intergenic MLT1G3|LTR|ERVL-MaLR -139156 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 155.75-24 chr12 50822966 50823532 + 0.5 NA Intergenic AluSz6|SINE|Alu -19677 NM_182559 283471 Hs.125571 NM_182559 ENSG00000186452 TMPRSS12 CT151 transmembrane serine protease 12 protein-coding 156.5-62 chr22 43869795 43870316 + 0.5 NA Intergenic L1MD1|LINE|L1 -7542 NM_014351 25830 Hs.189810 NM_014351 ENSG00000130540 SULT4A1 BR-STL-1|BRSTL1|DJ388M5.3|NST|SULTX3|hBR-STL-1 sulfotransferase family 4A member 1 protein-coding 167-99 chrX 119936712 119937280 + 0.5 NA intron (NM_024528, intron 2 of 8) L3b|LINE|CR1 6755 NM_024528 79576 Hs.522771 NM_024528 ENSG00000101882 NKAP - NFKB activating protein protein-coding 156.5-10 chr1 110780800 110781335 + 0.5 NA Intergenic Intergenic -90132 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 149.75-62 chr4 5669169 5669749 + 0.5 NA intron (NM_147127, intron 7 of 21) intron (NM_147127, intron 7 of 21) 39100 NM_147127 132884 Hs.87306 NM_147127 ENSG00000173040 EVC2 LBN|WAD EvC ciliary complex subunit 2 protein-coding 145.75-116 chr7 68558621 68559086 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL 538600 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 234.5-3 chr12 113654952 113655868 + 0.5 NA Intergenic MLT1H1|LTR|ERVL-MaLR 118273 NR_110025 100506465 Hs.211461 NR_110025 ENSG00000249550 LINC01234 LCAL84|onco-lncRNA-32 long intergenic non-protein coding RNA 1234 ncRNA 214.5-2 chr1 105045782 105046361 + 0.5 NA Intergenic L1M5|LINE|L1 572864 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 198.75-8 chr11 36891862 36892412 + 0.5 NA Intergenic Intergenic -293858 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 186-54 chr8 124135359 124135963 + 0.5 NA intron (NR_103547, intron 1 of 4) MSTB|LTR|ERVL-MaLR 35861 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 193-53 chr7 133432619 133433383 + 0.5 NA intron (NM_021807, intron 7 of 17) intron (NM_021807, intron 7 of 17) 142120 NR_106749 102465139 NR_106749 ENSG00000276137 MIR6133 hsa-mir-6133 microRNA 6133 ncRNA 164.5-78 chr6 61863059 61863487 + 0.5 NA intron (NM_001350622, intron 6 of 9) L1PA12|LINE|L1 289143 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 165-48 chr2 230501372 230502017 + 0.5 NA intron (NM_001080391, intron 19 of 28) intron (NM_001080391, intron 19 of 28) 84938 NM_001206704 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 151-61 chr3 62161552 62162023 + 0.5 NA intron (NM_002841, intron 7 of 29) intron (NM_002841, intron 7 of 29) 157160 NR_038282 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 178-42 chr3 82086901 82087601 + 0.5 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 101109 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 201.5-44 chr4 42917630 42918140 + 0.5 NA intron (NM_001080476, intron 1 of 3) intron (NM_001080476, intron 1 of 3) 24619 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 192.75-39 chr3 115180799 115181431 + 0.5 NA Intergenic MLT2A2|LTR|ERVL -33827 NM_001348800 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 220-12 chr22 19218693 19219384 + 0.5 NA intron (NM_007098, intron 18 of 32) intron (NM_007098, intron 18 of 32) -40175 NR_046298 6576 Hs.111024 NM_005984 ENSG00000100075 SLC25A1 CMS23|CTP|D2L2AD|SEA|SLC20A3 solute carrier family 25 member 1 protein-coding 168.75-61 chr22 40768673 40769094 + 0.5 NA TTS (NM_001282727) TTS (NM_001282727) 45075 NR_039923 100616283 NR_039923 ENSG00000266594 MIR4766 mir-4766 microRNA 4766 ncRNA 150.75-97 chr8 84901596 84901994 + 0.5 NA intron (NM_001287244, intron 7 of 7) MER92B|LTR|ERV1 195868 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 174.75-67 chr8 109258871 109259357 + 0.5 NA intron (NM_032869, intron 8 of 9) LTR40b|LTR|ERVL 70819 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 211-31 chr5 84682268 84682779 + 0.5 NA Intergenic Intergenic -297643 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 152.5-73 chr3 134830647 134831151 + 0.5 NA intron (NM_004441, intron 1 of 15) intron (NM_004441, intron 1 of 15) 35639 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 146.25-18 chr12 16083471 16083805 + 0.5 NA Intergenic Intergenic 172306 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 172.75-58 chr6 53331826 53332347 + 0.5 NA intron (NM_001242830, intron 1 of 6) MSTB1|LTR|ERVL-MaLR 5531 NR_046241 647190 Hs.520189 NR_046241 RPS16P5 RPS16_3_702 ribosomal protein S16 pseudogene 5 pseudo 157.75-54 chr2 165577732 165578169 + 0.5 NA intron (NM_024969, intron 1 of 4) intron (NM_024969, intron 1 of 4) 5614 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 200.5-39 chr3 112258525 112259281 + 0.5 NA intron (NM_001320531, intron 9 of 27).2 MSTA|LTR|ERVL-MaLR 35313 NM_183061 285335 Hs.680112 NM_183061 ENSG00000172139 SLC9C1 NHE|NHE-10|SLC9A10|sperm-NHE solute carrier family 9 member C1 protein-coding 280.25-7 chr3 53421183 53422145 + 0.5 NA Intergenic HERV16-int|LTR|ERVL -72947 NM_000720 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 193-6 chr1 193968887 193969390 + 0.5 NA Intergenic Intergenic 664393 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 228.25-10 chr17 72706283 72706975 + 0.5 NA intron (NM_001352692, intron 7 of 9) intron (NM_001352692, intron 7 of 9) -66157 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 160.5-82 chr5 4681215 4681760 + 0.5 NA Intergenic L1MA9|LINE|L1 -91994 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 150.25-97 chr7 48735466 48735975 + 0.5 NA Intergenic Intergenic -188827 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 156.25-23 chr14 70391818 70392224 + 0.5 NA intron (NM_001202549, intron 1 of 4) intron (NM_001202549, intron 1 of 4) 25069 NM_018373 55333 Hs.443661 NM_018373 ENSG00000213463 SYNJ2BP ARIP2|OMP25 synaptojanin 2 binding protein protein-coding 174-70 chr8 133622072 133622531 + 0.5 NA Intergenic MIRc|SINE|MIR -50414 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 154.25-73 chr6 102818293 102818769 + 0.5 NA Intergenic L1MC4|LINE|L1 1419546 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 361.25-4 chr2 215367665 215368859 + 0.5 NA intron (NM_212482, intron 41 of 45) intron (NM_212482, intron 41 of 45) 56203 NM_004044 471 Hs.90280 NM_004044 ENSG00000138363 ATIC AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 258-12 chr5 12955050 12955645 + 0.5 NA intron (NR_147005, intron 2 of 4) intron (NR_147005, intron 2 of 4) 77539 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 151.75-22 chr12 70145074 70145498 + 0.5 NA Intergenic Intergenic -97744 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 182.25-9 chr12 9027984 9028530 + 0.5 NA Intergenic AluSq2|SINE|Alu 36813 NR_034140 253128 Hs.408739 NM_001039381 ENSG00000214851 LINC00612 C12orf33 long intergenic non-protein coding RNA 612 ncRNA 237.75-16 chr3 96475123 96475762 + 0.5 NA Intergenic MER105|DNA|hAT-Charlie 115478 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 181.25-15 chr14 71629766 71630236 + 0.5 NA intron (NM_001354286, intron 8 of 24) L4_C_Mam|LINE|RTE-X 43703 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 176.5-50 chr3 88125224 88125910 + 0.5 NA intron (NM_001350135, intron 3 of 6) intron (NM_001350135, intron 3 of 6) 24299 NM_001195308 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 159.25-35 chr2 122429027 122429544 + 0.5 NA Intergenic Intergenic 644196 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 213.75-13 chr2 52814543 52815281 + 0.5 NA Intergenic L1PA15-16|LINE|L1 -112297 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 230-23 chr4 69747467 69748197 + 0.5 NA intron (NM_014465, intron 4 of 7) L1PA15|LINE|L1 12788 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 170-46 chr4 148487196 148487783 + 0.5 NA Intergenic Intergenic -42791 NM_001354819 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 157.5-102 chr8 75256857 75257448 + 0.5 NA intron (NR_103849, intron 1 of 1) intron (NR_103849, intron 1 of 1) 21329 NR_103850 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 182-32 chr2 209586527 209587049 + 0.5 NA intron (NM_001039538, intron 3 of 14) MER5A1|DNA|hAT-Charlie 7109 NM_031845 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 149.25-39 chr18 4079501 4080006 + 0.5 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 117400 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 200.75-32 chr20 46441834 46442518 + 0.5 NA intron (NR_146919, intron 3 of 3) MER41G|LTR|ERV1 15467 NR_045983 100130934 Hs.712133 NM_173643 ZNF663P ZNF663 zinc finger protein 663, pseudogene pseudo 196.5-37 chr4 36150811 36151338 + 0.5 NA intron (NR_146894, intron 15 of 32) intron (NR_146894, intron 15 of 32) 92865 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 145.75-55 chr2 88604582 88605051 + 0.5 NA intron (NM_004836, intron 2 of 16) intron (NM_004836, intron 2 of 16) 20113 NM_001313915 9451 Hs.591589 NM_004836 ENSG00000172071 EIF2AK3 PEK|PERK|WRS eukaryotic translation initiation factor 2 alpha kinase 3 protein-coding 185-51 chr3 189575942 189576470 + 0.5 NA Intergenic Intergenic -20540 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 155.75-87 chr5 154503388 154503789 + 0.5 NA Intergenic Intergenic -25361 NM_004821 9421 Hs.152531 NM_004821 ENSG00000113196 HAND1 Hxt|Thing1|bHLHa27|eHand heart and neural crest derivatives expressed 1 protein-coding 233.5-29 chr6 65243948 65244597 + 0.5 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -57146 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 172.75-59 chr6 53499244 53499871 + 0.5 NA intron (NM_001498, intron 15 of 15) intron (NM_001498, intron 15 of 15) 45544 NM_001197115 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 213.5-10 chr11 28608635 28609276 + 0.5 NA Intergenic Intergenic -131407 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 163.75-45 chr3 188030684 188031058 + 0.5 NA Intergenic Charlie7|DNA|hAT-Charlie -54464 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 192-43 chr3 182255354 182255818 + 0.5 NA Intergenic Intergenic 230776 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 173.5-66 chr5 41070487 41071046 + 0.5 NA intron (NM_173489, intron 1 of 41) intron (NM_173489, intron 1 of 41) 576 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 155-90 chr6 156399562 156400056 + 0.5 NA Intergenic Intergenic 21059 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 161-30 chr14 58691506 58691957 + 0.5 NA Intergenic FLAM_C|SINE|Alu 52894 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 172-61 chr4 72663333 72664005 + 0.5 NA Intergenic L2a|LINE|L2 -94448 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 285-2 chr2 77881243 77882036 + 0.5 NA intron (NR_110288, intron 1 of 3) L1MD1|LINE|L1 -34295 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 146.25-103 chr9 32195341 32195890 + 0.5 NA Intergenic L1MA4A|LINE|L1 -188988 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 165-58 chr3 112996820 112997290 + 0.5 NA intron (NM_014170, intron 4 of 5) intron (NM_014170, intron 4 of 5) 6071 NM_014170 29083 Hs.127496 NM_014170 ENSG00000163607 GTPBP8 HSPC135 GTP binding protein 8 (putative) protein-coding 204.5-4 chr1 205878916 205879615 + 0.5 NA intron (NR_046097, intron 1 of 2) L1PB4|LINE|L1 -10755 NR_046098 284581 NR_046097 LOC284581 - uncharacterized LOC284581 ncRNA 199.75-19 chr14 67108877 67109534 + 0.5 NA intron (NM_001024218, intron 12 of 21) Tigger3a|DNA|TcMar-Tigger -80235 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 148.75-18 chr11 43824124 43824467 + 0.5 NA intron (NM_016142, intron 6 of 10) intron (NM_016142, intron 6 of 10) -56536 NM_139178 221120 Hs.720708 NM_139178 ENSG00000166199 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1|hABH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding 164.75-88 chr8 85048696 85049135 + 0.5 NA Intergenic Intergenic -58323 NM_001349636 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 160.5-9 chr1 199617717 199618209 + 0.5 NA Intergenic LTR32|LTR|ERVL -409747 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 190.25-19 chr2 117304986 117305567 + 0.5 NA Intergenic L1MA2|LINE|L1 -509415 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 162.5-81 chr7 45896354 45896829 + 0.5 NA Intergenic ERVL-B4-int|LTR|ERVL 8103 NM_000596 3484 Hs.642938 NM_000596 ENSG00000146678 IGFBP1 AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1 insulin like growth factor binding protein 1 protein-coding 172.5-81 chr8 62314591 62315017 + 0.5 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 65950 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 180.5-56 chr5 3003780 3004338 + 0.5 NA Intergenic Intergenic 86205 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 149.25-92 chr6 132402330 132402741 + 0.5 NA Intergenic Intergenic -1060 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 165.75-99 chr8 59745612 59746081 + 0.5 NA Intergenic Intergenic 535554 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 174.5-44 chr2 225870350 225870750 + 0.5 NA Intergenic (TATTT)n|Simple_repeat|Simple_repeat -272244 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 202.75-33 chr4 81383508 81384153 + 0.5 NA Intergenic Intergenic 88077 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 259.5-18 chr8 90826375 90827074 + 0.5 NA intron (NM_022351, intron 3 of 12) (ATATTT)n|Simple_repeat|Simple_repeat 34949 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 156-20 chr12 119614377 119614936 + 0.5 NA intron (NM_001136534, intron 1 of 2) intron (NM_001136534, intron 1 of 2) 20882 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 149-7 chr10 108155342 108155845 + 0.5 NA Intergenic L2c|LINE|L2 -86300 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 155-18 chr11 99937878 99938220 + 0.5 NA intron (NM_001243270, intron 6 of 23) intron (NM_001243270, intron 6 of 23) 381904 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 145.75-118 chr7 77756007 77756436 + 0.5 NA intron (NM_198467, intron 3 of 7) AluSx3|SINE|Alu 42213 NM_032936 85025 Hs.19025 NM_032936 ENSG00000135211 TMEM60 C7orf35|DC32 transmembrane protein 60 protein-coding 192.25-18 chr13 82133303 82133900 + 0.5 NA Intergenic L1PA16|LINE|L1 -906618 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 172-6 chr1 178815233 178815645 + 0.5 NA intron (NM_152663, intron 6 of 19) L1ME3E|LINE|L1 55638 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 161.75-93 chr8 124669463 124670005 + 0.5 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 58739 NM_001363294 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 180.5-42 chr2 167012452 167013019 + 0.5 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 124248 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 176.5-88 chr8 106633972 106634611 + 0.5 NA intron (NM_018002, intron 3 of 15) intron (NM_018002, intron 3 of 15) -23517 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 160-84 chr8 100168948 100169368 + 0.5 NA intron (NM_003114, intron 3 of 18) L1MEc|LINE|L1 10823 NM_003114 6674 Hs.591866 NM_003114 ENSG00000104450 SPAG1 CILD28|CT140|HEL-S-268|HSD-3.8|SP75|TPIS sperm associated antigen 1 protein-coding 159.5-48 chr20 13817786 13818243 + 0.5 NA non-coding (NR_029377, exon 12 of 12) non-coding (NR_029377, exon 12 of 12) 32986 NR_147982 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 166.5-52 chr3 85437339 85437834 + 0.5 NA intron (NM_001167674, intron 1 of 9) L1MC1|LINE|L1 51876 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 177.25-76 chr8 127298911 127299526 + 0.5 NA intron (NR_117100, intron 5 of 5) LTR9|LTR|ERV1 54581 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 187.5-17 chr14 79863981 79864486 + 0.5 NA non-coding (NR_158973, exon 23 of 23) non-coding (NR_158973, exon 23 of 23) -347186 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 211.25-5 chr11 98834126 98834697 + 0.5 NA Intergenic L2a|LINE|L2 -186538 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 165.5-74 chr5 172200386 172200922 + 0.5 NA exon (NM_001171183, exon 3 of 4) exon (NM_001171183, exon 3 of 4) 6482 NM_001171183 285588 Hs.716824 NM_001171183 ENSG00000214360 EFCAB9 - EF-hand calcium binding domain 9 protein-coding 160.25-8 chr10 24552577 24553162 + 0.5 NA Intergenic Intergenic 69974 NR_160025 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 186.25-38 chr4 41767092 41767620 + 0.5 NA Intergenic Intergenic -18386 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 156.75-64 chr3 89982604 89983090 + 0.5 NA Intergenic MLT2A1|LTR|ERVL 875226 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 168.25-40 chr2 212725510 212726152 + 0.5 NA Intergenic Intergenic -69500 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 166-14 chr11 66620411 66620906 + 0.5 NA intron (NM_001198846, intron 1 of 1) intron (NM_001198846, intron 1 of 1) 4028 NM_006328 10432 Hs.533712 NM_006328 ENSG00000239306 RBM14 COAA|PSP2|SIP|SYTIP1|TMEM137 RNA binding motif protein 14 protein-coding 188.75-40 chr3 39159913 39160621 + 0.5 NA Intergenic AluJo|SINE|Alu -5626 NM_001320560 64651 Hs.370950 NM_033027 ENSG00000144655 CSRNP1 AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1 cysteine and serine rich nuclear protein 1 protein-coding 259.5-8 chr20 32231299 32231920 + 0.5 NA intron (NM_015352, intron 6 of 6) MIR|SINE|MIR -6186 NR_031726 100302183 NR_031726 ENSG00000284125 MIR1825 MIRN1825|hsa-mir-1825 microRNA 1825 ncRNA 164.5-100 chr9 13242305 13242742 + 0.5 NA intron (NM_003829, intron 3 of 45) intron (NM_003829, intron 3 of 45) 37041 NM_003829 8777 Hs.169378 NM_003829 ENSG00000107186 MPDZ HYC2|MUPP1 multiple PDZ domain crumbs cell polarity complex component protein-coding 163-32 chr14 70530989 70531631 + 0.5 NA intron (NM_003814, intron 1 of 1) L1PA8|LINE|L1 3694 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 146.75-109 chr7 86919110 86919605 + 0.5 NA intron (NM_001291991, intron 9 of 20) intron (NM_001291991, intron 9 of 20) 46542 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 206-16 chr2 68018663 68019398 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 43974 NM_001190265 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 158.25-83 chr5 40952299 40952799 + 0.5 NA intron (NM_000587, intron 9 of 17) L1PA5|LINE|L1 43052 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 181.5-52 chr3 178731245 178731803 + 0.5 NA intron (NM_001278911, intron 1 of 4) L1MC5|LINE|L1 128881 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 175.25-4 chr10 54415350 54415780 + 0.5 NA intron (NM_001142773, intron 2 of 31) intron (NM_001142773, intron 2 of 31) -70665 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 170.25-42 chr3 21407560 21407987 + 0.5 NA Intergenic Intergenic 2047 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 178.75-26 chr19 49346290 49346968 + 0.5 NA intron (NM_001256660, intron 10 of 12) AluSx1|SINE|Alu 11223 NM_001040031 951 Hs.166556 NM_001774 ENSG00000104894 CD37 GP52-40|TSPAN26 CD37 molecule protein-coding 202.25-7 chr11 4771195 4771901 + 0.5 NA Intergenic Intergenic -1610 NM_001004752 256892 NM_001004752 ENSG00000280021 OR51F1 OR11-21|OR51F1P olfactory receptor family 51 subfamily F member 1 (gene/pseudogene) protein-coding 161.5-96 chr9 97963914 97964477 + 0.5 NA Intergenic Intergenic -19146 NM_006401 10541 Hs.730654 NM_006401 ENSG00000136938 ANP32B APRIL|PHAPI2|SSP29 acidic nuclear phosphoprotein 32 family member B protein-coding 181.25-54 chr7 51171565 51172101 + 0.5 NA intron (NM_015198, intron 5 of 12) Charlie2b|DNA|hAT-Charlie 144976 NM_015198 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 173.25-20 chr12 97911163 97911700 + 0.5 NA Intergenic Intergenic 27690 NR_039716 100616287 NR_039716 ENSG00000265861 MIR4495 - microRNA 4495 ncRNA 166.5-24 chr14 72887852 72888446 + 0.5 NA intron (NM_001280543, intron 1 of 10) intron (NM_001280543, intron 1 of 10) 4500 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 155.5-69 chr3 182145342 182145782 + 0.5 NA Intergenic L1ME4a|LINE|L1 193198 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 205.5-41 chr6 122862751 122863567 + 0.5 NA Intergenic Intergenic 73901 NM_006714 10924 Hs.486357 NM_006714 ENSG00000172594 SMPDL3A ASM3A|ASML3a|yR36GH4.1 sphingomyelin phosphodiesterase acid like 3A protein-coding 162.25-77 chr5 111437920 111438535 + 0.5 NA intron (NM_001744, intron 5 of 10) L2c|LINE|L2 -73999 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 167.75-2 chr1 62243052 62243532 + 0.5 NA intron (NM_181712, intron 9 of 9) intron (NM_181712, intron 9 of 9) 48443 NM_001164835 54596 Hs.685462 NM_019079 ENSG00000240563 L1TD1 ECAT11 LINE1 type transposase domain containing 1 protein-coding 157-68 chr4 78466164 78466635 + 0.5 NA exon (NM_025074, exon 50 of 74) exon (NM_025074, exon 50 of 74) -85371 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 199.25-14 chr14 60522674 60523272 + 0.5 NA Intergenic Intergenic 13827 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 146.75-95 chr6 38209528 38209943 + 0.5 NA intron (NM_052893, intron 10 of 11) intron (NM_052893, intron 10 of 11) -271861 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 199.75-40 chr4 76736057 76736743 + 0.5 NA intron (NM_020859, intron 4 of 10) 7SK|RNA|RNA 160849 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 197.5-58 chr8 78518956 78519634 + 0.5 NA intron (NM_181839, intron 1 of 2) intron (NM_181839, intron 1 of 2) 2955 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 149.25-48 chr2 155333336 155333845 + 0.5 NA Intergenic Intergenic 634895 NM_002239 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 268.75-13 chr7 50127633 50128589 + 0.5 NA intron (NM_001161834, intron 2 of 8) L1MA4|LINE|L1 32025 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 160.5-47 chr2 31893896 31894354 + 0.5 NA intron (NM_001137602, intron 4 of 7) L1M4a1|LINE|L1 -90145 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 170.25-82 chr9 106139866 106140398 + 0.5 NA Intergenic Intergenic 445591 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 172-52 chr3 87776152 87776636 + 0.5 NA Intergenic L1PB1|LINE|L1 -16312 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 151-90 chr7 76247383 76247868 + 0.5 NA intron (NM_001110199, intron 2 of 14) intron (NM_001110199, intron 2 of 14) 45729 NM_001110199 222183 Hs.511025 NM_001039212 ENSG00000177679 SRRM3 - serine/arginine repetitive matrix 3 protein-coding 212-24 chr20 45765955 45766779 + 0.5 NA Intergenic Intergenic 25516 NM_080614 140686 Hs.419126 NM_080614 ENSG00000124116 WFDC3 WAP14|dJ447F3.3 WAP four-disulfide core domain 3 protein-coding 155-59 chr3 117188118 117188581 + 0.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR 266918 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 203.75-29 chr4 49105561 49106188 + 0.5 NA Intergenic (CATTC)n|Satellite|Satellite 119232 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 172.25-77 chrX 73410528 73411066 + 0.5 NA Intergenic Intergenic -36457 NM_005193 1046 Hs.553488 NM_005193 ENSG00000131264 CDX4 - caudal type homeobox 4 protein-coding 189.5-24 chr18 60379086 60379737 + 0.5 NA Intergenic L2c|LINE|L2 -6636 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 277.75-14 chr5 53729551 53730542 + 0.5 NA Intergenic L1MB2|LINE|L1 89636 NR_147167 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 174.5-81 chr8 72823348 72823754 + 0.5 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 91506 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 168-73 chrX 37327881 37328463 + 0.5 NA Intergenic Intergenic -21158 NM_001173489 5638 Hs.190341 NM_000950 ENSG00000130962 PRRG1 PRGP1 proline rich and Gla domain 1 protein-coding 165.75-65 chr3 113011534 113012092 + 0.5 NA intron (NR_134969, intron 3 of 5) intron (NR_134969, intron 3 of 5) 7858 NR_134969 25871 Hs.591288 NM_015412 ENSG00000163608 NEPRO C3orf17|NET17 nucleolus and neural progenitor protein protein-coding 152-55 chr3 121646071 121646532 + 0.5 NA intron (NM_001292041, intron 4 of 12) (TA)n|Simple_repeat|Simple_repeat 14602 NM_005335 3059 Hs.14601 NM_005335 ENSG00000180353 HCLS1 CTTNL|HS1|lckBP1|p75 hematopoietic cell-specific Lyn substrate 1 protein-coding 180.75-54 chr6 49171973 49172556 + 0.5 NA Intergenic Intergenic 290989 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 256.75-9 chr13 66441860 66442626 + 0.5 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) 223993 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 211-5 chr1 177417229 177417867 + 0.5 NA Intergenic Intergenic 65962 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 151-110 chr9 37225095 37225522 + 0.5 NA intron (NM_001289120, intron 2 of 8) L1ME1|LINE|L1 104710 NM_001289121 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 189.5-25 chr18 76186353 76187001 + 0.5 NA Intergenic Intergenic -22833 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 149.5-31 chr16 11367084 11367436 + 0.5 NA Intergenic AluSg4|SINE|Alu 21801 NM_152308 116028 Hs.347524 NM_152308 ENSG00000175643 RMI2 BLAP18|C16orf75 RecQ mediated genome instability 2 protein-coding 178.5-36 chr2 14138816 14139209 + 0.5 NA Intergenic L2a|LINE|L2 261946 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 189.75-57 chr5 18930519 18931096 + 0.5 NA Intergenic L1MB7|LINE|L1 955465 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 153.25-27 chr11 108252199 108252785 + 0.5 NA intron (NM_001351834, intron 12 of 63) intron (NM_001351834, intron 12 of 63) 28963 NM_001351836 472 Hs.367437 NM_000051 ENSG00000149311 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 158-71 chr5 106228803 106229170 + 0.5 NA Intergenic Intergenic 782028 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 201.75-16 chr17 13518894 13519692 + 0.5 NA intron (NM_006042, intron 1 of 1) intron (NM_006042, intron 1 of 1) 24353 NR_031679 100302287 NR_031679 ENSG00000221698 MIR548H3 MIR548H-3|MIRN548H3|hsa-mir-548h-3 microRNA 548h-3 ncRNA 177.25-19 chr13 63015274 63015873 + 0.5 NA Intergenic L1PA13|LINE|L1 -208214 NR_120403 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 186.25-9 chr12 23134265 23134741 + 0.5 NA Intergenic Intergenic -41133 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 197.5-57 chr7 145242404 145242904 + 0.5 NA Intergenic Intergenic -406601 NM_022445 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 180.75-58 chr7 20487969 20488468 + 0.5 NA Intergenic AluSc|SINE|Alu -127449 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 152.25-14 chr10 30976680 30977190 + 0.5 NA intron (NR_026560, intron 1 of 6) intron (NR_026560, intron 1 of 6) 22582 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 148.75-7 chr1 217730600 217731044 + 0.5 NA intron (NM_138796, intron 5 of 10) intron (NM_138796, intron 5 of 10) 54298 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 163.5-62 chr2 190700066 190700519 + 0.5 NA Intergenic Intergenic 41134 NM_001321314 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 165.5-33 chr14 74792404 74792938 + 0.5 NA intron (NM_019589, intron 4 of 20) HAL1|LINE|L1 29355 NM_019589 56252 Hs.531111 NM_019589 ENSG00000119596 YLPM1 C14orf170|PPP1R169|ZAP113|ZAP3 YLP motif containing 1 protein-coding 161.25-34 chr2 37349627 37350150 + 0.5 NA intron (NM_012413, intron 1 of 6) intron (NM_012413, intron 1 of 6) 5258 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 149.75-36 chr2 17232219 17232745 + 0.5 NA Intergenic Intergenic 285958 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 187.25-67 chr8 69065762 69066376 + 0.5 NA intron (NR_039986, intron 2 of 4) intron (NR_039986, intron 2 of 4) 38121 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 193.5-11 chr11 29670547 29671090 + 0.5 NA Intergenic Intergenic 52016 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 151-95 chr8 14454748 14455151 + 0.5 NA intron (NM_001322881, intron 2 of 6) L1MC4a|LINE|L1 398561 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 212-17 chr18 13919559 13920179 + 0.5 NA Intergenic Intergenic -4162 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 178-14 chr11 111808180 111808810 + 0.5 NA intron (NR_147984, intron 14 of 15) intron (NR_147984, intron 14 of 15) -42106 NM_002716 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 161.5-22 chr11 47073994 47074563 + 0.5 NA intron (NM_001003677, intron 3 of 8) AluJo|SINE|Alu 102601 NM_032389 84364 Hs.436204 NM_032389 ENSG00000149182 ARFGAP2 IRZ|NBLA10535|ZFP289|ZNF289 ADP ribosylation factor GTPase activating protein 2 protein-coding 204.5-31 chr5 26740546 26741025 + 0.5 NA Intergenic Intergenic 297801 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 175.75-48 chr3 140226282 140226930 + 0.5 NA intron (NM_022131, intron 2 of 16) intron (NM_022131, intron 2 of 16) 282183 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 181.25-45 chr4 77787823 77788265 + 0.5 NA intron (NM_001365006, intron 1 of 11) intron (NM_001365006, intron 1 of 11) 31020 NM_001365007 246175 Hs.592519 NM_144571 ENSG00000138767 CNOT6L CCR4b CCR4-NOT transcription complex subunit 6 like protein-coding 148.75-94 chr7 34427250 34427740 + 0.5 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -230723 NM_207172 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 164-43 chr21 19273851 19274393 + 0.5 NA Intergenic Intergenic -514310 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 176.5 chr1 52585256 52585646 + 0.5 NA Intergenic FLAM_C|SINE|Alu -16920 NM_015696 2882 Hs.43728 NM_015696 ENSG00000116157 GPX7 CL683|GPX6|GPx-7|GSHPx-7|NPGPx glutathione peroxidase 7 protein-coding 183.5-30 chr2 60591935 60592407 + 0.5 NA Intergenic L1MA4|LINE|L1 -38517 NM_138559 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 150.5-96 chr5 78292182 78292550 + 0.5 NA intron (NM_003664, intron 1 of 26) intron (NM_003664, intron 1 of 26) 2332 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 151-88 chr7 46969943 46970473 + 0.5 NA Intergenic MER66B|LTR|ERV1 -273086 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 150.75-26 chr15 96335478 96335894 + 0.5 NA intron (NM_021005, intron 2 of 2) intron (NM_021005, intron 2 of 2) 1921 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 245.75-8 chr14 92823748 92824656 + 0.5 NA intron (NM_005113, intron 8 of 12) intron (NM_005113, intron 8 of 12) 29897 NM_005113 9950 Hs.104320 NM_005113 ENSG00000066455 GOLGA5 GOLIM5|RFG5|ret-II golgin A5 protein-coding 147.25-102 chr9 8389160 8389492 + 0.5 NA exon (NM_001040712, exon 21 of 30) exon (NM_001040712, exon 21 of 30) 344620 NM_130392 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 151.5-56 chr20 20630588 20631035 + 0.5 NA intron (NM_020343, intron 9 of 39) intron (NM_020343, intron 9 of 39) 81833 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 214.75-2 chr1 73445179 73445738 + 0.5 NA Intergenic Intergenic 139288 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 178.5-18 chr12 57359335 57359943 + 0.5 NA intron (NM_001351217, intron 1 of 21) L1ME1|LINE|L1 -17183 NM_001351214 22864 Hs.443673 NM_014925 ENSG00000179912 R3HDM2 CAG6|PR01365 R3H domain containing 2 protein-coding 163.75-37 chr21 24651935 24652554 + 0.5 NA Intergenic L1ME3A|LINE|L1 -188306 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 234.25-15 chr3 179430893 179431686 + 0.5 NA intron (NM_021629, intron 1 of 9) AluSz6|SINE|Alu 20181 NM_021629 59345 Hs.173030 NM_021629 ENSG00000114450 GNB4 CMTD1F G protein subunit beta 4 protein-coding 267-6 chr4 22211351 22211941 + 0.5 NA Intergenic Intergenic 128020 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 168.25-61 chr5 133661509 133661892 + 0.5 NA Intergenic Intergenic -49159 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 148.25-99 chr9 28074676 28075149 + 0.5 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -501046 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 173-70 chr6 101822350 101822997 + 0.5 NA intron (NM_001166247, intron 9 of 16) MIRb|SINE|MIR 423688 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 191-7 chr10 29294483 29295134 + 0.5 NA intron (NM_032517, intron 3 of 4) MER44A|DNA|TcMar-Tigger 5738 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 176.75-13 chr11 56467271 56467823 + 0.5 NA Intergenic Intergenic 2991 NM_001004742 219482 Hs.553631 NM_001004742 ENSG00000174937 OR5M3 OR11-191 olfactory receptor family 5 subfamily M member 3 protein-coding 145.75-129 chr8 142687664 142688064 + 0.5 NA Intergenic PABL_A-int|LTR|ERV1 7369 NM_005672 8000 Hs.652235 NM_005672 ENSG00000167653 PSCA PRO232 prostate stem cell antigen protein-coding 157-56 chr21 27651170 27651682 + 0.5 NA Intergenic Intergenic -70953 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 165.25-51 chr5 30148271 30148786 + 0.5 NA Intergenic Intergenic 267968 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 150.5-24 chr11 6347240 6347673 + 0.5 NA Intergenic LTR79|LTR|ERVL -26955 NM_145040 112464 Hs.434044 NM_145040 ENSG00000170955 CAVIN3 HSRBC|PRKCDBP|SRBC|cavin-3 caveolae associated protein 3 protein-coding 195.75-32 chr2 22803784 22804458 + 0.5 NA Intergenic Intergenic 267642 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 185.25-42 chr2 57517157 57517847 + 0.5 NA Intergenic Intergenic -390149 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 154-8 chr1 115139814 115140419 + 0.5 NA Intergenic Intergenic -50613 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 158-5 chr1 189224070 189224473 + 0.5 NA Intergenic L1MA10|LINE|L1 1251739 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 156.75-93 chr7 36985273 36985675 + 0.5 NA promoter-TSS (NM_001039459) promoter-TSS (NM_001039459) -362 NM_001039459 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 167-8 chr10 33903005 33903408 + 0.5 NA Intergenic Intergenic -130526 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 148.25-100 chr9 79131256 79131715 + 0.5 NA Intergenic Intergenic 14181 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 185.75-41 chr2 145489734 145490451 + 0.5 NA Intergenic L1ME2z|LINE|L1 822125 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 209.25-25 chr2 137342022 137342646 + 0.5 NA intron (NM_001316349, intron 12 of 27) L1MA7|LINE|L1 576789 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 145.75-126 chr8 91628945 91629504 + 0.5 NA Intergenic Intergenic 379905 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 228.25-9 chr16 87121701 87122609 + 0.5 NA Intergenic Charlie16a|DNA|hAT-Charlie 64371 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 150-80 chr6 169560941 169561340 + 0.5 NA intron (NR_146875, intron 19 of 20) MLT1A0|LTR|ERVL-MaLR 140889 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 170.5-14 chr12 59109572 59110088 + 0.5 NA Intergenic L2a|LINE|L2 -189292 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 217.75-31 chr4 73138293 73138833 + 0.5 NA intron (NM_198889, intron 14 of 32) intron (NM_198889, intron 14 of 32) -68804 NM_001300729 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 159.75-71 chr4 92698181 92698762 + 0.5 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 394072 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 155-28 chr14 37858069 37858563 + 0.5 NA Intergenic MIRc|SINE|MIR 43808 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 167-19 chr13 102731645 102732219 + 0.5 NA exon (NM_001146197, exon 4 of 4) exon (NM_001146197, exon 4 of 4) 27140 NM_001146197 643677 Hs.368382 NM_001146197 ENSG00000175820 CCDC168 C13orf40 coiled-coil domain containing 168 protein-coding 148-61 chr3 60153205 60153668 + 0.5 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -72527 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 248.25 chr1 84268330 84269189 + 0.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -29779 NM_001010971 148418 Hs.591445 NM_001010971 ENSG00000203943 SAMD13 HSD-41|HSD-42 sterile alpha motif domain containing 13 protein-coding 154.75-30 chr16 77905243 77905775 + 0.5 NA intron (NM_020927, intron 7 of 8) intron (NM_020927, intron 7 of 8) 116945 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 152-40 chr2 116808825 116809272 + 0.5 NA Intergenic Intergenic -1005643 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 175-52 chr8 14085911 14086549 + 0.5 NA 3' UTR (NM_001322881, exon 7 of 7) 3' UTR (NM_001322881, exon 7 of 7) 456540 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 155.5-60 chr3 39718169 39718616 + 0.5 NA Intergenic Intergenic -90522 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 241.5-36 chr9 3386642 3387323 + 0.5 NA intron (NM_134428, intron 3 of 17) intron (NM_134428, intron 3 of 17) 8614 NM_002919 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 161.25-16 chr12 38418416 38418849 + 0.5 NA Intergenic Intergenic 101858 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 175.5-14 chr11 24132916 24133370 + 0.5 NA Intergenic L1PREC2|LINE|L1 -363910 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 179.5-10 chr10 85331459 85332141 + 0.5 NA Intergenic MLT1C|LTR|ERVL-MaLR 100972 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 158.5-85 chr5 81936231 81936821 + 0.5 NA Intergenic Intergenic -35497 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 176.25-33 chr16 75580833 75581233 + 0.5 NA Intergenic Intergenic 14654 NM_007285 11345 Hs.461379 NM_007285 ENSG00000034713 GABARAPL2 ATG8|ATG8C|GATE-16|GATE16|GEF-2|GEF2 GABA type A receptor associated protein like 2 protein-coding 185.5-5 chr1 76025817 76026305 + 0.5 NA Intergenic Intergenic 14737 NR_125939 101927342 Hs.216363 NR_125939 LOC101927342 - uncharacterized LOC101927342 ncRNA 268-20 chr9 103423769 103424587 + 0.5 NA Intergenic Intergenic -99145 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 206.75-26 chr2 160104193 160104783 + 0.5 NA intron (NM_001282390, intron 13 of 13) intron (NM_001282390, intron 13 of 13) -41873 NM_001007267 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 249.5-25 chr6 135713791 135714627 + 0.5 NA intron (NR_152842, intron 5 of 5) MLT1D|LTR|ERVL-MaLR -137492 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 190.5-38 chr3 159127793 159128295 + 0.5 NA intron (NM_001197113, intron 1 of 10) intron (NM_001197113, intron 1 of 10) 58725 NM_001042706 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 165.75-89 chr6 123350745 123351281 + 0.5 NA 3' UTR (NM_001251987, exon 21 of 21) 3' UTR (NM_001251987, exon 21 of 21) -88591 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 183.25-79 chr8 141151459 141151868 + 0.5 NA exon (NM_001352890, exon 7 of 23) exon (NM_001352890, exon 7 of 23) 23074 NR_148197 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 320.25-2 chr14 70846633 70847597 + 0.5 NA Intergenic AluSx1|SINE|Alu -37602 NM_033141 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 146.25-40 chr19 27972565 27972907 + 0.5 NA intron (NR_146734, intron 6 of 7) L2a|LINE|L2 -178796 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 164.25-40 chr18 69276073 69276543 + 0.5 NA Intergenic MER65-int|LTR|ERV1 -124580 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 218.25-38 chr6 65098076 65098863 + 0.5 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -202949 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 151.25-2 chr1 159999684 160000108 + 0.5 NA Intergenic Intergenic 32094 NM_145167 93183 Hs.552810 NM_145167 ENSG00000143315 PIGM GPI-MT-I phosphatidylinositol glycan anchor biosynthesis class M protein-coding 160.5-92 chr5 81204426 81204849 + 0.5 NA intron (NM_006909, intron 19 of 26) intron (NM_006909, intron 19 of 26) -28683 NM_001825 1160 Hs.80691 NM_001825 ENSG00000131730 CKMT2 SMTCK creatine kinase, mitochondrial 2 protein-coding 194.25-51 chr8 110850957 110851720 + 0.5 NA Intergenic AluSx3|SINE|Alu 176095 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 151.5-23 chr12 102924210 102924700 + 0.5 NA intron (NM_001354304, intron 1 of 13) intron (NM_001354304, intron 1 of 13) -7211 NM_000277 5053 Hs.560019 NM_000277 ENSG00000171759 PAH PH|PKU|PKU1 phenylalanine hydroxylase protein-coding 155.5-45 chr2 45331800 45332253 + 0.5 NA Intergenic Intergenic -77085 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 159-17 chr12 101394285 101394842 + 0.5 NA 3' UTR (NM_001177, exon 6 of 6) 3' UTR (NM_001177, exon 6 of 6) 13209 NM_001177 400 Hs.372616 NM_001177 ENSG00000120805 ARL1 ARFL1 ADP ribosylation factor like GTPase 1 protein-coding 155.75-8 chr1 204127725 204128198 + 0.5 NA TTS (NM_005686) TTS (NM_005686) -13447 NR_123739 101929441 Hs.736889 NR_123739 ENSG00000230550 ERLNC1 ElncRNA1|TC0101441 estrogen receptor responsive lncRNA 1 ncRNA 162-32 chr2 12457773 12458265 + 0.5 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) -258853 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 161-37 chr17 55061292 55061803 + 0.5 NA intron (NM_178509, intron 12 of 17) intron (NM_178509, intron 12 of 17) -92762 NM_001321518 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 158.5-50 chr2 166016091 166016606 + 0.5 NA intron (NR_110598, intron 2 of 3) intron (NR_110598, intron 2 of 3) 58930 NR_110598 102724058 Hs.570269 NR_110598 ENSG00000236107 LOC102724058 - uncharacterized LOC102724058 ncRNA 168.25-45 chr3 94824228 94824602 + 0.5 NA Intergenic Intergenic -113848 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 172-44 chr20 10701679 10702364 + 0.5 NA Intergenic L1MC4|LINE|L1 -28022 NM_000214 182 Hs.224012 NM_000214 ENSG00000101384 JAG1 AGS|AGS1|AHD|AWS|CD339|DCHE|HJ1|JAGL1 jagged canonical Notch ligand 1 protein-coding 148-20 chr11 80400062 80400596 + 0.5 NA Intergenic Intergenic 362474 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 218.25-4 chr1 224163297 224164158 + 0.5 NA Intergenic Intergenic -19513 NM_001321541 8560 Hs.299878 NM_003676 ENSG00000143753 DEGS1 DEGS|DEGS-1|DES1|Des-1|FADS7|HLD18|MIG15|MLD delta 4-desaturase, sphingolipid 1 protein-coding 158.5-54 chr2 221649577 221649963 + 0.5 NA Intergenic Intergenic -75568 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 202 chr1 99699954 99700539 + 0.5 NA intron (NR_031666, intron 1 of 4) L1MB2|LINE|L1 12707 NR_031666 100302152 NR_031666 ENSG00000221669 MIR548N MIRN548N|hsa-mir-548n microRNA 548n ncRNA 150.25-8 chr1 195842381 195842909 + 0.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 246070 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 222.5-57 chr9 123086365 123086999 + 0.5 NA intron (NM_012197, intron 19 of 25) intron (NM_012197, intron 19 of 25) 24961 NR_030331 693185 NR_030331 ENSG00000283941 MIR600 MIRN600|hsa-mir-600 microRNA 600 ncRNA 186-43 chr6 103047840 103048422 + 0.5 NA Intergenic L1MC2|LINE|L1 1649146 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 187.5-58 chr6 23488488 23488895 + 0.5 NA Intergenic HAL1b|LINE|L1 -637524 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 154.5-14 chr10 104726662 104727253 + 0.5 NA intron (NM_014978, intron 1 of 26) intron (NM_014978, intron 1 of 26) -60741 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 198.25-10 chr12 40149292 40149788 + 0.5 NA Intergenic Intergenic -6699 NR_146526 105369734 NR_146526 LINC02471 - long intergenic non-protein coding RNA 2471 ncRNA 164.5-98 chr8 107155990 107156350 + 0.5 NA Intergenic MIR|SINE|MIR 180345 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 198.5-41 chr5 32602351 32603067 + 0.5 NA 3' UTR (NM_006713, exon 5 of 5) 3' UTR (NM_006713, exon 5 of 5) 17152 NM_006713 10923 Hs.229641 NM_006713 ENSG00000113387 SUB1 P15|PC4|p14 SUB1 regulator of transcription protein-coding 222.5-40 chr4 91400658 91401161 + 0.5 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 876393 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 156-19 chr12 93225526 93225975 + 0.5 NA intron (NR_040096, intron 2 of 4) L1ME3Cz|LINE|L1 51384 NR_120492 102724933 Hs.663947 NR_120492 ENSG00000258171 LINC02412 - long intergenic non-protein coding RNA 2412 ncRNA 167-36 chr18 60089157 60089556 + 0.5 NA Intergenic AluSx4|SINE|Alu 189360 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 158.5-25 chr15 26595861 26596297 + 0.5 NA intron (NM_001191320, intron 2 of 6) LTR47A|LTR|ERVL 33011 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 179.75-66 chr8 117768582 117769015 + 0.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR 152115 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 175.25-45 chr4 30935200 30935835 + 0.5 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) 215148 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 149-73 chr4 43369727 43370312 + 0.5 NA Intergenic Intergenic 122524 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 186-30 chr3 157440017 157440548 + 0.5 NA intron (NM_002852, intron 2 of 2) intron (NM_002852, intron 2 of 2) 3432 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 195.75-6 chr10 21934963 21935617 + 0.5 NA intron (NM_022365, intron 1 of 11) L1M4|LINE|L1 68440 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 157.5-24 chr13 71785398 71785956 + 0.5 NA intron (NM_080759, intron 1 of 10) intron (NM_080759, intron 1 of 10) 81515 NM_080760 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 263.5-22 chr8 88706554 88707260 + 0.5 NA Intergenic Intergenic -379424 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 178.25-3 chr1 103827821 103828358 + 0.5 NA Intergenic L1M4c|LINE|L1 78248 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 170-53 chr6 84169541 84170085 + 0.5 NA intron (NM_001286206, intron 17 of 26) intron (NM_001286206, intron 17 of 26) 57830 NM_014895 22832 Hs.485865 NM_014895 ENSG00000135315 CEP162 C6orf84|KIAA1009|QN1 centrosomal protein 162 protein-coding 178.75-29 chr2 79338764 79339424 + 0.5 NA Intergenic L2a|LINE|L2 161750 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 186.75-78 chr7 40688105 40688548 + 0.5 NA intron (NM_024728, intron 13 of 14) intron (NM_024728, intron 13 of 14) 291613 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 188.25-59 chr7 87139692 87140221 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR 12361 NR_136252 101927420 Hs.633960 NR_136252 ENSG00000224046 LOC101927420 - uncharacterized LOC101927420 ncRNA 157.75-39 chr16 51984743 51985323 + 0.5 NA Intergenic L1MA5|LINE|L1 88902 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 200.75-52 chr7 95847495 95848043 + 0.5 NA intron (NM_004411, intron 5 of 16) L2c|LINE|L2 75263 NM_001135557 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 162-77 chr8 84316887 84317326 + 0.5 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) -98378 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 161.75-50 chr3 113777645 113778161 + 0.5 NA intron (NM_001690, intron 1 of 14) L2a|LINE|L2 30868 NM_001690 523 Hs.477155 NM_001690 ENSG00000114573 ATP6V1A ARCL2D|ATP6A1|ATP6V1A1|HO68|IECEE3|VA68|VPP2|Vma1 ATPase H+ transporting V1 subunit A protein-coding 146-3 chr1 90037839 90038209 + 0.5 NA Intergenic L1ME3G|LINE|L1 42914 NM_001320185 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 145.75-16 chr11 25092063 25092494 + 0.5 NA Intergenic Intergenic 595225 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 152.25-94 chr8 78023321 78023718 + 0.5 NA Intergenic L2a|LINE|L2 -492821 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 249.75-16 chr4 89603156 89603872 + 0.5 NA Intergenic Intergenic -232887 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 235.5-33 chr7 22559903 22560558 + 0.5 NA Intergenic Intergenic -3107 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 333.5-2 chr10 60226389 60227307 + 0.5 NA intron (NM_001204403, intron 9 of 43) L1MEf|LINE|L1 -85832 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 249.75-7 chr2 123175199 123176141 + 0.5 NA Intergenic L1MC5a|LINE|L1 -102189 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 188.25-61 chr8 78936429 78937161 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR 99266 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 195.25-34 chr21 34573273 34573795 + 0.5 NA intron (NM_004414, intron 1 of 3) intron (NM_004414, intron 1 of 3) 40309 NM_001285389 1827 Hs.282326 NM_004414 ENSG00000159200 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 204-19 chr18 9212981 9213536 + 0.5 NA intron (NM_001204056, intron 5 of 11) intron (NM_001204056, intron 5 of 11) 75695 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 159-18 chr13 35065547 35065994 + 0.5 NA intron (NM_015678, intron 8 of 57) intron (NM_015678, intron 8 of 57) 123483 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 187-2 chr10 99721347 99721813 + 0.5 NA intron (NM_004376, intron 5 of 8) intron (NM_004376, intron 5 of 8) -10654 NM_015960 51076 Hs.16606 NM_015960 ENSG00000119929 CUTC CGI-32 cutC copper transporter protein-coding 146.5-30 chr14 88360493 88360867 + 0.5 NA Intergenic THE1C|LTR|ERVL-MaLR -24964 NM_001040428 55812 Hs.525518 NM_018418 ENSG00000042317 SPATA7 HEL-S-296|HSD-3.1|HSD3|LCA3 spermatogenesis associated 7 protein-coding 154.5-80 chr6 1216355 1216740 + 0.5 NA Intergenic Intergenic -95551 NM_033260 94234 Hs.591352 NM_033260 ENSG00000164379 FOXQ1 HFH1 forkhead box Q1 protein-coding 146-95 chr8 107663457 107663801 + 0.5 NA Intergenic A-rich|Low_complexity|Low_complexity -165711 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 157.75-90 chr5 102740591 102741214 + 0.5 NA Intergenic Intergenic -13881 NM_001319943 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 174.75-14 chr11 26349987 26350651 + 0.5 NA intron (NM_031418, intron 1 of 26) intron (NM_031418, intron 1 of 26) 18189 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 178-6 chr10 30511725 30512183 + 0.5 NA Intergenic AluSz6|SINE|Alu 77308 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 170.5-41 chr20 14040037 14040538 + 0.5 NA intron (NM_001351663, intron 2 of 17) Tigger3c|DNA|TcMar-Tigger 44771 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 192.5-25 chr2 81936843 81937482 + 0.5 NA Intergenic Intergenic -470216 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 230.25-26 chr4 59145907 59146485 + 0.5 NA Intergenic L1PA11|LINE|L1 132623 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 168.25-27 chr18 9320643 9321193 + 0.5 NA Intergenic Intergenic -13855 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 153.25-53 chr2 14135899 14136377 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 264820 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 166-42 chr2 205262003 205262514 + 0.5 NA intron (NM_057177, intron 16 of 21) intron (NM_057177, intron 16 of 21) -420242 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 169.25-37 chr3 170497645 170498168 + 0.5 NA intron (NM_020949, intron 4 of 7) intron (NM_020949, intron 4 of 7) 30621 NR_135557 101928583 Hs.407600 NR_135555 ENSG00000285051 SLC7A14-AS1 - SLC7A14 antisense RNA 1 ncRNA 203.75-12 chr2 164759042 164759608 + 0.5 NA intron (NM_001365670, intron 2 of 13) intron (NM_001365670, intron 2 of 13) -71548 NR_033309 100337591 Hs.664357 NR_033309 ENSG00000206869 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 184.5-72 chr9 35418628 35419063 + 0.5 NA intron (NR_003582, intron 2 of 10) L1PB3|LINE|L1 12090 NR_003581 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 158.25-17 chr11 10565038 10565576 + 0.5 NA intron (NM_006691, intron 1 of 5) intron (NM_006691, intron 1 of 5) 3358 NM_006691 10894 Hs.655332 NM_006691 ENSG00000133800 LYVE1 CRSBP-1|HAR|LYVE-1|XLKD1 lymphatic vessel endothelial hyaluronan receptor 1 protein-coding 177-42 chr3 116822301 116822756 + 0.5 NA Intergenic Intergenic 27839 NR_039649 100616485 NR_039649 ENSG00000265433 MIR4447 - microRNA 4447 ncRNA 155.75-22 chr11 98497727 98498208 + 0.5 NA Intergenic L2|LINE|L2 -522982 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 147.25-80 chr5 175437197 175437634 + 0.5 NA Intergenic Intergenic 6767 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 175.25-50 chr5 54726973 54727362 + 0.5 NA intron (NR_104658, intron 1 of 2) intron (NR_104658, intron 1 of 2) 17091 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 146.5-98 chr6 167197895 167198287 + 0.5 NA Intergenic L1P3|LINE|L1 27472 NM_001145121 401285 NM_001013683 ENSG00000166984 TCP10L2 - t-complex 10 like 2 protein-coding 146-79 chr6 56822063 56822550 + 0.5 NA intron (NM_001144770, intron 2 of 94) L1MEc|LINE|L1 21359 NM_183380 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 206.25-17 chr18 73570932 73571484 + 0.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 246267 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 277.25-12 chr8 15260240 15260971 + 0.5 NA Intergenic L2a|LINE|L2 -22174 NM_001322879 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 166.75-70 chr5 62845901 62846445 + 0.5 NA Intergenic L1M2|LINE|L1 267354 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 173-33 chr16 82869712 82870254 + 0.5 NA intron (NM_001220490, intron 2 of 12) L1MA4|LINE|L1 96664 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 169-22 chr16 63781633 63782117 + 0.5 NA Intergenic THE1D|LTR|ERVL-MaLR 1340188 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 208.25-3 chr1 90144846 90145476 + 0.5 NA Intergenic L2a|LINE|L2 150051 NM_001320185 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 186.75-21 chr12 47702716 47703155 + 0.5 NA intron (NM_024604, intron 1 of 16) intron (NM_024604, intron 1 of 16) 3095 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 200-48 chr9 25520626 25521232 + 0.5 NA Intergenic Intergenic 157929 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 185.25-81 chr9 28027608 28028030 + 0.5 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -453953 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 163.5-42 chr16 75505575 75505974 + 0.5 NA Intergenic Intergenic -10333 NR_163481 4166 Hs.655622 NM_021615 ENSG00000183196 CHST6 C-GlcNAc6ST|GST4-beta|MCDC1|glcNAc6ST-5|gn6st-5|hCGn6ST carbohydrate sulfotransferase 6 protein-coding 165.25-10 chr10 114941754 114942324 + 0.5 NA intron (NM_139169, intron 1 of 7) AluY|SINE|Alu 3844 NM_139169 142940 Hs.21187 NM_139169 ENSG00000165832 TRUB1 PUS4 TruB pseudouridine synthase family member 1 protein-coding 165-24 chr13 87482973 87483466 + 0.5 NA intron (NR_033829, intron 2 of 5) L1ME2|LINE|L1 135521 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 183.75-100 chrX 77387419 77388039 + 0.5 NA Intergenic L1MA2|LINE|L1 -59660 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 155.5-14 chr11 25958436 25958922 + 0.5 NA Intergenic MIRb|SINE|MIR -230444 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 152.25-61 chr3 343975 344462 + 0.5 NA intron (NM_001253388, intron 6 of 24) intron (NM_001253388, intron 6 of 24) 24535 NM_001253388 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 152-59 chr4 58703789 58704345 + 0.5 NA Intergenic L2c|LINE|L2 -167739 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 168.75-45 chr2 63154677 63155117 + 0.5 NA intron (NR_148704, intron 16 of 18) L1ME1|LINE|L1 -35355 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 169-79 chr9 89265660 89266111 + 0.5 NA Intergenic Intergenic -45310 NM_001827 1164 Hs.83758 NM_001827 ENSG00000123975 CKS2 CKSHS2 CDC28 protein kinase regulatory subunit 2 protein-coding 176.5-31 chr19 20642105 20642774 + 0.5 NA intron (NM_001076675, intron 3 of 3) AluSx4|SINE|Alu 19132 NM_001076675 199777 Hs.657001 NM_145297 ENSG00000188171 ZNF626 - zinc finger protein 626 protein-coding 177.25-72 chr7 115679173 115679778 + 0.5 NA Intergenic Intergenic -98034 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 166-70 chr7 78442392 78442989 + 0.5 NA intron (NM_001301128, intron 6 of 20) intron (NM_001301128, intron 6 of 20) 95448 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 149.25-15 chr11 87036826 87037185 + 0.5 NA promoter-TSS (NM_022918) promoter-TSS (NM_022918) -929 NM_022918 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 151-10 chr10 89859064 89859652 + 0.5 NA intron (NR_149080, intron 1 of 1) L1ME2|LINE|L1 5452 NR_149080 105378425 Hs.559891 NR_149079 ENSG00000280560 LINC01374 TCONS_00018278 long intergenic non-protein coding RNA 1374 ncRNA 156.25-105 chr9 70695311 70695687 + 0.5 NA intron (NM_001366143, intron 8 of 25) (GTCT)n|Simple_repeat|Simple_repeat 114585 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 155.75-6 chr1 102355304 102355642 + 0.5 NA Intergenic Intergenic -358239 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 167.5-60 chr3 143784391 143785050 + 0.5 NA intron (NM_173653, intron 4 of 15) intron (NM_173653, intron 4 of 15) 63748 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 187.5-47 chr3 166623524 166624086 + 0.5 NA Intergenic MIRc|SINE|MIR -274878 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 162.75-6 chr1 219797918 219798466 + 0.5 NA Intergenic MER5A|DNA|hAT-Charlie 130459 NM_018713 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 165.75-44 chr2 105065570 105066041 + 0.5 NA intron (NM_182640, intron 2 of 10) intron (NM_182640, intron 2 of 10) -27309 NR_110603 102724691 Hs.606390 NR_110603 ENSG00000224509 LOC102724691 - uncharacterized LOC102724691 ncRNA 165-12 chr11 5060272 5060751 + 0.5 NA promoter-TSS (NM_001005164) promoter-TSS (NM_001005164) -884 NM_001005164 119678 Hs.553557 NM_001005164 ENSG00000176787 OR52E2 - olfactory receptor family 52 subfamily E member 2 protein-coding 188-39 chr3 19427974 19428627 + 0.5 NA intron (NM_144633, intron 7 of 15) intron (NM_144633, intron 7 of 15) -113369 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 197-2 chr10 54654015 54654646 + 0.5 NA intron (NR_134503, intron 4 of 5) intron (NR_134503, intron 4 of 5) -46373 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 168-30 chr2 12451211 12451708 + 0.5 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 252329 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 193.75-3 chr1 188470723 188471197 + 0.5 NA Intergenic L1M5|LINE|L1 1027332 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 183.25-42 chr3 104562575 104563250 + 0.5 NA Intergenic Intergenic -803801 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 147.75-64 chr22 45341336 45341810 + 0.5 NA non-coding (NR_146323, exon 12 of 12) non-coding (NR_146323, exon 12 of 12) 23130 NM_001349913 55007 Hs.265018 NM_017911 ENSG00000100376 FAM118A C22orf8 family with sequence similarity 118 member A protein-coding 152.75-22 chr11 111699875 111700344 + 0.5 NA intron (NM_015191, intron 4 of 14) intron (NM_015191, intron 4 of 14) 66280 NM_001177562 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 181.25-26 chr2 108069196 108069642 + 0.5 NA Intergenic Intergenic -16664 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 173-30 chr14 53747870 53748403 + 0.5 NA Intergenic Intergenic 200348 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 151-34 chr19 28775861 28776449 + 0.5 NA Intergenic AluSp|SINE|Alu -48461 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 208.5-31 chr2 54752034 54752681 + 0.5 NA intron (NM_001039753, intron 1 of 40) L1ME3|LINE|L1 27345 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 182-7 chr10 31958682 31959218 + 0.5 NA Intergenic MER83B-int|LTR|ERV1 -30074 NM_001270695 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 159.75-30 chr14 35867583 35867964 + 0.5 NA intron (NM_032352, intron 8 of 9) intron (NM_032352, intron 8 of 9) 41435 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 154-52 chr2 43979217 43979618 + 0.5 NA intron (NM_133259, intron 3 of 37) L1ME4b|LINE|L1 16572 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 217.75-35 chr5 59033851 59034507 + 0.5 NA intron (NM_006203, intron 6 of 14) intron (NM_006203, intron 6 of 14) 5297 NM_001197221 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 198.25-18 chr2 19284696 19285389 + 0.5 NA Intergenic L1PREC2|LINE|L1 -63387 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 194-23 chr16 8978236 8978953 + 0.5 NA Intergenic AluJb|SINE|Alu -14688 NM_003470 7874 Hs.386939 NM_003470 ENSG00000187555 USP7 HAUSP|TEF1 ubiquitin specific peptidase 7 protein-coding 194.25-18 chr2 42822766 42823314 + 0.5 NA Intergenic L2b|LINE|L2 -30457 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 240.75-10 chr15 62063189 62063778 + 0.5 NA Intergenic MIR3|SINE|MIR 2980 NR_135690 101928907 Hs.552949 NR_135690 LOC101928907 - uncharacterized LOC101928907 ncRNA 177-32 chr2 184769475 184770021 + 0.5 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 171219 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 170.5-28 chr18 4805139 4805614 + 0.5 NA Intergenic Intergenic -275806 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 200-51 chrX 93602632 93603146 + 0.5 NA Intergenic L1ME1|LINE|L1 70689 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 151.75-29 chr14 67102189 67102590 + 0.5 NA intron (NM_001024218, intron 12 of 21) AluSp|SINE|Alu -87051 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 151.5-38 chr17 53990416 53990843 + 0.5 NA Intergenic Intergenic 167702 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 147.25-4 chr1 82123949 82124433 + 0.5 NA Intergenic Intergenic 321738 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 243.5-11 chr17 63084910 63085710 + 0.5 NA intron (NM_025185, intron 3 of 25) L1MCa|LINE|L1 119075 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 173.75-61 chr6 160941080 160941664 + 0.5 NA Intergenic Intergenic -50355 NR_120425 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 200.25-11 chr12 45710102 45710657 + 0.5 NA Intergenic Intergenic 17542 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 171.75-64 chr5 108718212 108718659 + 0.5 NA Intergenic MIRb|SINE|MIR 9826 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 218.5-11 chr14 66472549 66473123 + 0.5 NA Intergenic Intergenic -13535 NR_110307 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 177-21 chr15 96287226 96287786 + 0.5 NA intron (NR_102743, intron 3 of 7) L2a|LINE|L2 -38540 NM_001145155 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 172-62 chr4 85513540 85514221 + 0.5 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 38730 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 153.75-35 chr2 147316653 147317104 + 0.5 NA Intergenic HERV9-int|LTR|ERV1 -527639 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 211-17 chr17 58462004 58462473 + 0.5 NA intron (NM_001080439, intron 4 of 5) intron (NM_001080439, intron 4 of 5) 26170 NM_001080439 124535 Hs.380061 NM_001080439 ENSG00000176160 HSF5 HSF 5|HSTF 5 heat shock transcription factor 5 protein-coding 148.25 chr1 40083613 40084155 + 0.5 NA intron (NM_001363695, intron 5 of 7) AluJb|SINE|Alu 13368 NM_001363695 5538 Hs.3873 NM_000310 ENSG00000131238 PPT1 CLN1|INCL|PPT palmitoyl-protein thioesterase 1 protein-coding 168.75-83 chr5 128219036 128219709 + 0.5 NA Intergenic Intergenic 135606 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 206.25-40 chr7 18890513 18890999 + 0.5 NA intron (NM_058176, intron 21 of 22) intron (NM_058176, intron 21 of 22) 226880 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 214.75-14 chr11 5086726 5087267 + 0.5 NA Intergenic Tigger17c|DNA|TcMar-Tigger 17624 NM_001348221 79296 NM_001348221 ENSG00000273085 OR52E1 OR52E1P olfactory receptor family 52 subfamily E member 1 (gene/pseudogene) protein-coding 165.25-28 chr2 203224109 203224694 + 0.5 NA Intergenic Intergenic -14040 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 318.5-5 chr3 35183961 35184777 + 0.5 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 209654 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 193-18 chr13 45699443 45700063 + 0.5 NA intron (NR_125786, intron 1 of 3) LTR49-int|LTR|ERV1 1431 NR_125786 103752581 NR_125786 LINC01055 - long intergenic non-protein coding RNA 1055 ncRNA 149.5-59 chr3 19417212 19417626 + 0.5 NA intron (NM_144633, intron 7 of 15) intron (NM_144633, intron 7 of 15) -102488 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 174.75-39 chr3 77486238 77486659 + 0.5 NA intron (NM_001290039, intron 4 of 26) L1PA10|LINE|L1 388436 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 210.25-41 chr9 16718835 16719558 + 0.5 NA intron (NM_001317940, intron 2 of 5) intron (NM_001317940, intron 2 of 5) -7618 NR_151723 111216284 Hs.609218 NR_151723 ENSG00000234779 BNC2-AS1 - BNC2 antisense RNA 1 ncRNA 179-38 chr3 13912856 13913271 + 0.5 NA Intergenic L1PB2|LINE|L1 -19993 NR_036481 100132526 Hs.637770 NR_036481 ENSG00000275340 FGD5P1 - FYVE, RhoGEF and PH domain containing 5 pseudogene 1 pseudo 174.25-40 chr3 30116719 30117289 + 0.5 NA Intergenic Intergenic -182848 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 277.75-3 chr10 30328478 30329289 + 0.5 NA intron (NM_018109, intron 4 of 8) intron (NM_018109, intron 4 of 8) 20455 NM_018109 55149 Hs.173946 NM_018109 ENSG00000107951 MTPAP PAPD1|SPAX4|TENT6 mitochondrial poly(A) polymerase protein-coding 236.5-22 chr4 29008900 29009710 + 0.5 NA intron (NR_146499, intron 2 of 2) intron (NR_146499, intron 2 of 2) 12521 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 187.75-67 chr7 29357614 29358281 + 0.5 NA intron (NM_001293071, intron 2 of 11) intron (NM_001293071, intron 2 of 11) -121765 NM_001293075 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 165.25-19 chr18 1839935 1840463 + 0.5 NA Intergenic AluSz|SINE|Alu -480570 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 195.5-66 chr8 68606757 68607423 + 0.5 NA intron (NR_146186, intron 7 of 12) intron (NR_146186, intron 7 of 12) -275599 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 187.25-48 chr5 27145070 27145518 + 0.5 NA Intergenic Intergenic -106708 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 206.75-24 chr2 78555494 78556040 + 0.5 NA intron (NR_136311, intron 2 of 2) L1MEg|LINE|L1 10236 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 297.75-2 chr11 111862699 111863713 + 0.5 NA intron (NR_147984, intron 4 of 15) AluSc8|SINE|Alu 8075 NM_001352415 79796 Hs.745155 NM_024740 ENSG00000086848 ALG9 CDG1L|DIBD1|GIKANIS|LOH11CR1J ALG9 alpha-1,2-mannosyltransferase protein-coding 177.75-35 chr2 200194008 200194486 + 0.5 NA Intergenic Intergenic -111632 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 181.75-36 chr2 226178088 226178611 + 0.5 NA intron (NR_046102, intron 5 of 6) intron (NR_046102, intron 5 of 6) 35555 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 146.25-54 chr3 6092074 6092529 + 0.5 NA Intergenic Intergenic 713148 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 169.5-88 chr8 24332918 24333357 + 0.5 NA intron (NM_014265, intron 13 of 22) L1MA9|LINE|L1 39068 NM_001304351 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 173-62 chr5 81912203 81912679 + 0.5 NA Intergenic L1MB8|LINE|L1 -59582 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 165.75-29 chr12 68361656 68362200 + 0.5 NA Intergenic Intergenic -29514 NM_001354971 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 156.25-44 chr2 199296392 199296823 + 0.5 NA intron (NM_001172509, intron 10 of 10) AluJb|SINE|Alu 161332 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 187-6 chr11 81767117 81767755 + 0.5 NA Intergenic Intergenic 123400 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 173.25-79 chr9 87221884 87222369 + 0.5 NA Intergenic L1ME3G|LINE|L1 73482 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 209.25-51 chr8 121440323 121441030 + 0.5 NA Intergenic L1ME1|LINE|L1 -198670 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 172.75 chr1 3047994 3048440 + 0.5 NA Intergenic L1MEc|LINE|L1 19508 NR_024371 440556 Hs.531041 NM_198543 ENSG00000177133 PRDM16-DT LINC00982|lnc-dPrdm16 PRDM16 divergent transcript ncRNA 152-82 chr6 67860628 67861083 + 0.5 NA Intergenic MER4-int|LTR|ERV1 -194496 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 206-29 chr6 75141988 75142597 + 0.5 NA intron (NM_080645, intron 11 of 50) intron (NM_080645, intron 11 of 50) -13510 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 149.25-36 chr17 32444988 32445463 + 0.5 NA intron (NM_002815, intron 1 of 13) intron (NM_002815, intron 1 of 13) 715 NM_001270482 5717 Hs.443379 NM_002815 ENSG00000108671 PSMD11 Rpn6|S9|p44.5 proteasome 26S subunit, non-ATPase 11 protein-coding 147-60 chr22 47985605 47985955 + 0.5 NA Intergenic L1MB7|LINE|L1 -288584 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 164-11 chr11 42607689 42608151 + 0.5 NA Intergenic Intergenic -354230 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 175.25-46 chr4 77223309 77223741 + 0.5 NA Intergenic L1MA9|LINE|L1 66318 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 150.5-20 chr10 65210681 65211199 + 0.5 NA Intergenic Intergenic -286422 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 187.25-51 chr5 81981198 81981662 + 0.5 NA intron (NM_001131028, intron 2 of 8) intron (NM_001131028, intron 2 of 8) 9407 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 164.75-30 chr17 63215793 63216231 + 0.5 NA intron (NM_025185, intron 6 of 25) AluY|SINE|Alu 224255 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 204.75-14 chr13 32619842 32620304 + 0.5 NA intron (NM_015032, intron 1 of 34) AluSq2|SINE|Alu 33621 NM_015032 23047 Hs.744901 NM_015032 ENSG00000083642 PDS5B APRIN|AS3|CG008 PDS5 cohesin associated factor B protein-coding 146.5-89 chr5 111364016 111364568 + 0.5 NA intron (NM_001323376, intron 2 of 8) intron (NM_001323376, intron 2 of 8) 139908 NM_001323376 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 188.5-29 chr20 42044449 42044889 + 0.5 NA Intergenic MIR|SINE|MIR -426292 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 225-19 chr5 175301661 175302163 + 0.5 NA Intergenic Intergenic 142270 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 157-79 chr5 146111008 146111438 + 0.5 NA Intergenic AluSg4|SINE|Alu -5646 NM_001029869 153770 Hs.162369 NM_001029869 ENSG00000173261 PLAC8L1 - PLAC8 like 1 protein-coding 193.25-8 chr10 44366937 44367614 + 0.5 NA Intergenic Intergenic 17822 NM_001033886 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 156-43 chr2 206692340 206692760 + 0.5 NA intron (NM_001093730, intron 9 of 11) L1ME4a|LINE|L1 25846 NM_001093730 391475 Hs.640667 NM_001093730 ENSG00000232125 DYTN - dystrotelin protein-coding 181.5-18 chr12 70561449 70562083 + 0.5 NA intron (NM_001109754, intron 16 of 33) L2a|LINE|L2 48258 NM_001206972 5787 Hs.201030 NM_002837 ENSG00000127329 PTPRB HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP protein tyrosine phosphatase receptor type B protein-coding 171.25-29 chr2 16147171 16147689 + 0.5 NA Intergenic (TATATAT)n|Simple_repeat|Simple_repeat 97003 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 193.75-40 chr20 1252452 1253024 + 0.5 NA intron (NM_001136566, intron 13 of 13) HAL1|LINE|L1 -13556 NM_014723 9751 Hs.323833 NM_014723 ENSG00000101298 SNPH - syntaphilin protein-coding 185.75-26 chr16 77729486 77730181 + 0.5 NA intron (NM_001243661, intron 2 of 2) AluSx|SINE|Alu 7319 NM_001105663 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 216-21 chr18 75591058 75591555 + 0.5 NA Intergenic AluYa5|SINE|Alu 121097 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 164.5-67 chr5 58295457 58295947 + 0.5 NA Intergenic L2a|LINE|L2 164384 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 230.75-42 chr8 89321253 89322001 + 0.5 NA Intergenic Intergenic 436084 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 257.75-5 chr11 112088179 112088864 + 0.5 NA intron (NM_001276503, intron 2 of 2) intron (NM_001276503, intron 2 of 2) 1648 NM_001276504 6392 Hs.356270 NM_003002 ENSG00000204370 SDHD CBT1|CII-4|CWS3|PGL|PGL1|QPs3|SDH4|cybS succinate dehydrogenase complex subunit D protein-coding 189.75-68 chr6 145252360 145252868 + 0.5 NA Intergenic Intergenic 434263 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 179-58 chr7 16338878 16339416 + 0.5 NA intron (NM_001101417, intron 2 of 8) L1MC1|LINE|L1 82391 NM_001368197 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 183.25-64 chr6 7362026 7362689 + 0.5 NA intron (NM_001170692, intron 9 of 13) intron (NM_001170692, intron 9 of 13) 27385 NM_205864 285782 Hs.721486 NM_175745 ENSG00000164304 CAGE1 CT3|CT95|CTAG3|bA69L16.7 cancer antigen 1 protein-coding 158.75-14 chr12 13938582 13939107 + 0.5 NA intron (NM_000834, intron 1 of 12) L1ME2|LINE|L1 41512 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 162.25-75 chr5 106137491 106137968 + 0.5 NA Intergenic Intergenic 873285 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 217.75-10 chr10 115844816 115845657 + 0.5 NA intron (NM_207303, intron 27 of 28) intron (NM_207303, intron 27 of 28) 349553 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 167.5-24 chr14 74484577 74484995 + 0.5 NA intron (NM_001363688, intron 2 of 3) intron (NM_001363688, intron 2 of 3) -4582 NR_039858 100616211 NR_039858 ENSG00000283944 MIR4709 mir-4709 microRNA 4709 ncRNA 176.5-32 chr19 30386796 30387396 + 0.5 NA intron (NM_014717, intron 1 of 4) intron (NM_014717, intron 1 of 4) 14712 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 158.75-70 chr6 96581788 96582294 + 0.5 NA intron (NM_020482, intron 2 of 6) intron (NM_020482, intron 2 of 6) 18916 NM_001322467 9457 Hs.632608 NM_020482 ENSG00000112214 FHL5 1700027G07Rik|ACT|FHL-5|dJ393D12.2 four and a half LIM domains 5 protein-coding 200.25-18 chr14 77348726 77349413 + 0.5 NA intron (NM_001346133, intron 2 of 5) L2c|LINE|L2 24530 NM_001363703 2954 Hs.655292 NM_001513 ENSG00000100577 GSTZ1 GSTZ1-1|MAAI|MAAID|MAI glutathione S-transferase zeta 1 protein-coding 166.75-29 chr15 56297047 56297432 + 0.5 NA Intergenic Intergenic -52157 NM_001370561 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 149.5-7 chr10 5879617 5880051 + 0.5 NA intron (NM_001009943, intron 5 of 5) intron (NM_001009943, intron 5 of 5) -9738 NM_001258452 84893 Hs.498543 NM_032807 ENSG00000134452 FBH1 FBXO18|Fbx18|hFBH1 F-box DNA helicase 1 protein-coding 152.5-33 chr15 72074078 72074537 + 0.5 NA intron (NM_006901, intron 1 of 41) L1MC2|LINE|L1 -39951 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 178.25-81 chrX 100108152 100108863 + 0.5 NA Intergenic Intergenic 301766 NM_001105243 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 206.5-46 chr7 94598743 94599417 + 0.5 NA intron (NM_001346717, intron 7 of 9) intron (NM_001346717, intron 7 of 9) 57053 NM_001301139 8910 Hs.371199 NM_003919 ENSG00000127990 SGCE DYT11|ESG|epsilon-SG sarcoglycan epsilon protein-coding 192.75-29 chr2 101494430 101494936 + 0.5 NA Intergenic Intergenic -19571 NM_001367508 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 157-14 chr10 49638455 49639050 + 0.5 NA intron (NM_001142929, intron 7 of 14) L1MD1|LINE|L1 24715 NM_001142934 1103 Hs.302002 NM_020549 ENSG00000070748 CHAT CHOACTASE|CMS1A|CMS1A2|CMS6 choline O-acetyltransferase protein-coding 170.25-58 chr5 43573509 43573966 + 0.5 NA non-coding (NR_073113, exon 3 of 3) non-coding (NR_073113, exon 3 of 3) -16318 NM_183323 10605 Hs.482038 NM_006451 ENSG00000172239 PAIP1 - poly(A) binding protein interacting protein 1 protein-coding 154-73 chr4 63728515 63729003 + 0.5 NA Intergenic L1MA5|LINE|L1 680691 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 183.5-3 chr1 112184026 112184426 + 0.5 NA Intergenic Intergenic 193690 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 181-37 chr5 133160091 133160738 + 0.5 NA Intergenic MLT1H2|LTR|ERVL-MaLR 108401 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 173-67 chr6 83974105 83974545 + 0.5 NA Intergenic LTR19C|LTR|ERV1 -59447 NM_001346543 112609 Hs.370055 NM_138409 ENSG00000135324 MRAP2 C6orf117|bA51G5.2 melanocortin 2 receptor accessory protein 2 protein-coding 158.25-48 chr2 3969935 3970360 + 0.5 NA intron (NR_037881, intron 1 of 2) MIRb|SINE|MIR 3885 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 162.5-24 chr13 113243116 113243689 + 0.5 NA intron (NM_001008895, intron 11 of 19) intron (NM_001008895, intron 11 of 19) -19518 NR_107042 102465874 NR_107042 ENSG00000277942 MIR8075 hsa-mir-8075 microRNA 8075 ncRNA 233.25-30 chr8 51169478 51170284 + 0.5 NA Intergenic MLT2D|LTR|ERVL 639564 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 192-24 chr18 50008417 50008876 + 0.5 NA intron (NM_001080467, intron 4 of 39) intron (NM_001080467, intron 4 of 39) 117917 NR_036204 100422865 NR_036204 ENSG00000283343 MIR4320 - microRNA 4320 ncRNA 204.75-11 chr12 42705754 42706517 + 0.5 NA intron (NR_135028, intron 2 of 3) intron (NR_135028, intron 2 of 3) 13919 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 153.5-45 chr2 57516159 57516526 + 0.5 NA Intergenic Intergenic -391309 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 186.75-38 chr18 2465737 2466164 + 0.5 NA Intergenic Intergenic 105555 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 175.5-94 chr8 127616243 127616914 + 0.5 NA Intergenic Intergenic 117389 NR_117101 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 146.75-102 chr7 19541595 19542027 + 0.5 NA Intergenic Intergenic 163625 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 148-26 chr14 36053266 36053672 + 0.5 NA Intergenic Intergenic -16958 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 155.25-74 chr5 84770888 84771461 + 0.5 NA Intergenic L1M4|LINE|L1 -386294 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 153.25-80 chr4 28590717 28591269 + 0.5 NA Intergenic Intergenic -228589 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 152.75-103 chr8 121063700 121064113 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -251860 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 413.5-2 chr8 98672276 98673305 + 0.5 NA intron (NM_001256313, intron 4 of 8) intron (NM_001256313, intron 4 of 8) 152881 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 165.5-2 chr1 30114373 30114873 + 0.5 NA Intergenic Intergenic -77011 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 195.25-39 chr3 121448929 121449632 + 0.5 NA intron (NM_199420, intron 26 of 29) intron (NM_199420, intron 26 of 29) 96708 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 156.25-74 chr5 101800648 101801235 + 0.5 NA Intergenic L1MC1|LINE|L1 495343 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 196-24 chr2 111627624 111628205 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR -132753 NR_136166 541471 Hs.560805 NR_015395 ENSG00000172965 MIR4435-2HG AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH MIR4435-2 host gene ncRNA 193.75-37 chr2 162784329 162785082 + 0.5 NA non-coding (NR_110258, exon 3 of 5) non-coding (NR_110258, exon 3 of 5) 15769 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 146.5-10 chr10 58218885 58219453 + 0.5 NA intron (NM_152230, intron 3 of 5) intron (NM_152230, intron 3 of 5) 48725 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 149.5-21 chr13 72061777 72062273 + 0.5 NA Intergenic L1M1|LINE|L1 -194821 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 159.5-72 chr5 23934788 23935417 + 0.5 NA Intergenic L1MC5|LINE|L1 -16246 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 149.5-81 chr6 124103681 124104065 + 0.5 NA intron (NM_001040214, intron 1 of 6) AluY|SINE|Alu -179132 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 172-82 chr7 83603487 83604129 + 0.5 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 37623 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 156.75-101 chr8 124430323 124430877 + 0.5 NA Intergenic L2a|LINE|L2 -20220 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 194-31 chr3 115419316 115420088 + 0.5 NA Intergenic Intergenic -203808 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 156.5-21 chr10 86891736 86892326 + 0.5 NA intron (NM_004329, intron 4 of 12) intron (NM_004329, intron 4 of 12) -63728 NM_001330120 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 146.75-104 chr7 48982453 48982930 + 0.5 NA Intergenic L1MEc|LINE|L1 58144 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 161.25-62 chr6 12304721 12305282 + 0.5 NA Intergenic Intergenic 14640 NM_001168319 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 175.5-92 chr8 25845536 25846087 + 0.5 NA intron (NM_022659, intron 15 of 15) intron (NM_022659, intron 15 of 15) 199602 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 154.75-59 chr21 15638276 15638713 + 0.5 NA Intergenic Intergenic -91440 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 202.5-9 chr11 38648989 38649658 + 0.5 NA intron (NR_120553, intron 1 of 2) intron (NR_120553, intron 1 of 2) 465 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 167-48 chr20 48861897 48862511 + 0.5 NA Intergenic AluSx|SINE|Alu -34205 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 146.25-62 chr3 105698090 105698498 + 0.5 NA intron (NR_135809, intron 13 of 18) intron (NR_135809, intron 13 of 18) 169297 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 180.5-34 chr2 33313658 33314263 + 0.5 NA intron (NM_206943, intron 23 of 33) MamRTE1|LINE|RTE-BovB -104556 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 172.25-16 chr12 29029330 29029820 + 0.5 NA Intergenic AluSp|SINE|Alu -119703 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 255-4 chr15 66998344 66999021 + 0.5 NA intron (NR_135686, intron 2 of 5) L1PREC2|LINE|L1 -42167 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 205-38 chr4 129776188 129776910 + 0.5 NA intron (NR_151713, intron 1 of 16) intron (NR_151713, intron 1 of 16) 4930 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 173-80 chr7 112019434 112019938 + 0.5 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 186713 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 190 chr1 13921621 13922128 + 0.5 NA Intergenic AluY|SINE|Alu 172459 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 157-46 chr2 51270495 51270999 + 0.5 NA intron (NR_135237, intron 2 of 10) MLT1G3-int|LTR|ERVL-MaLR 238146 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 202.75-2 chr1 67699077 67699802 + 0.5 NA Intergenic Intergenic 14238 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 195.25-42 chr4 38682102 38682668 + 0.5 NA intron (NM_016531, intron 2 of 5) intron (NM_016531, intron 2 of 5) -17757 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 153.25-11 chr1 102130199 102130741 + 0.5 NA Intergenic Intergenic -133236 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 182-50 chr7 3547185 3547731 + 0.5 NA intron (NM_152744, intron 1 of 44) Charlie23a|DNA|hAT-Charlie 246206 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 165.25-35 chr22 44210018 44210486 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 29327 NM_022141 64098 Hs.658995 NM_022141 ENSG00000138964 PARVG - parvin gamma protein-coding 249.5-28 chr7 95403116 95404055 + 0.5 NA Intergenic L1PA16|LINE|L1 -7210 NM_000940 5446 Hs.440967 NM_000940 ENSG00000105852 PON3 - paraoxonase 3 protein-coding 168 chr1 60537705 60538308 + 0.5 NA intron (NR_146508, intron 6 of 7) L1MCc|LINE|L1 84679 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 184.25-36 chr20 9200182 9200707 + 0.5 NA intron (NM_001172646, intron 1 of 37) L2a|LINE|L2 -16946 NM_182797 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 153.5-79 chr5 36643678 36644147 + 0.5 NA intron (NM_004172, intron 3 of 9) AluSg|SINE|Alu 37306 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 208.25-39 chr9 92315803 92316622 + 0.5 NA intron (NM_001256394, intron 7 of 17) intron (NM_001256394, intron 7 of 17) 9138 NM_017948 55035 Hs.442199 NM_017948 ENSG00000198000 NOL8 C9orf34|NOP132|bA62C3.3|bA62C3.4 nucleolar protein 8 protein-coding 162.75-32 chr16 51000471 51001029 + 0.5 NA intron (NR_039672, intron 2 of 6) intron (NR_039672, intron 2 of 6) -17008 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 207.25-10 chr10 72614520 72615111 + 0.5 NA intron (NM_006077, intron 1 of 11) L1MB3|LINE|L1 11264 NM_001195518 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 244.5-26 chr4 164879356 164880270 + 0.5 NA intron (NM_001297550, intron 2 of 2) intron (NM_001297550, intron 2 of 2) 2635 NM_001297550 100506013 Hs.105196 NM_001297550 ENSG00000248329 APELA ELA|Ende|tdl apelin receptor early endogenous ligand protein-coding 191.25-22 chr13 80227842 80228496 + 0.5 NA Intergenic Cheshire|DNA|hAT-Charlie 111490 NM_001318538 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 168-58 chr5 26582613 26583199 + 0.5 NA Intergenic Intergenic 455680 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 169.75-35 chr15 62158993 62159461 + 0.5 NA Intergenic MSTC|LTR|ERVL-MaLR 6058 NM_001007595 388125 Hs.144372 NM_001007595 ENSG00000205502 C2CD4B FAM148B|NLF2 C2 calcium dependent domain containing 4B protein-coding 165.5-23 chr12 53798688 53799272 + 0.5 NA Intergenic Intergenic -41946 NR_104332 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 148.5-28 chr14 71974986 71975495 + 0.5 NA intron (NM_001370288, intron 2 of 16) L1MEg|LINE|L1 41713 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 194.75-8 chr11 16552293 16553010 + 0.5 NA intron (NM_001367872, intron 3 of 16) intron (NM_001367872, intron 3 of 16) -76263 NM_033326 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 167.5-91 chr7 141757817 141758281 + 0.5 NA Intergenic L1ME4a|LINE|L1 -6048 NM_016943 50831 Hs.676011 NM_016943 ENSG00000127362 TAS2R3 T2R3 taste 2 receptor member 3 protein-coding 260.5-21 chr9 36511795 36512680 + 0.5 NA Intergenic AluSp|SINE|Alu -60625 NM_001256685 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 193.5-53 chr4 71988231 71988658 + 0.5 NA Intergenic Intergenic -43360 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 162.5-15 chr10 126237147 126237559 + 0.5 NA intron (NM_001288974, intron 3 of 18) (TTCTA)n|Simple_repeat|Simple_repeat 151124 NM_021641 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 193.25-2 chr1 58385304 58385732 + 0.5 NA Intergenic Intergenic -134971 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 153.75-21 chr16 62185760 62186223 + 0.5 NA Intergenic Intergenic -149553 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 255-11 chr5 78028801 78029459 + 0.5 NA intron (NM_003664, intron 24 of 26) L1ME3Cz|LINE|L1 70883 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 200.25-17 chr14 46130142 46130845 + 0.5 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 66334 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 209.25-10 chr12 63848725 63849260 + 0.5 NA intron (NM_001346201, intron 1 of 21) intron (NM_001346201, intron 1 of 21) 4292 NM_001346201 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 200.25-6 chr10 42678866 42679486 + 0.5 NA intron (NR_120659, intron 4 of 4) AluJr|SINE|Alu 12583 NR_120656 101929397 Hs.729796 NR_120656 LINC01518 - long intergenic non-protein coding RNA 1518 ncRNA 179.25-79 chr9 3433278 3433690 + 0.5 NA intron (NM_001282116, intron 1 of 16) Tigger2|DNA|TcMar-Tigger -37888 NM_002919 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 161.5-56 chr22 34687824 34688451 + 0.5 NA Intergenic L2b|LINE|L2 309779 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 205.5-23 chr2 180457453 180458234 + 0.5 NA Intergenic MamGypLTR1d|LTR|Gypsy -234261 NR_104324 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 166.75-79 chr6 142771210 142771770 + 0.5 NA exon (NM_006734, exon 5 of 10) exon (NM_006734, exon 5 of 10) -133601 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 224.25-25 chr3 6922250 6922793 + 0.5 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -28504 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 145.75-43 chr18 13686664 13687025 + 0.5 NA intron (NM_152352, intron 1 of 3) L1MC2|LINE|L1 39714 NM_001098801 125228 Hs.13034 NM_152352 ENSG00000177150 FAM210A C18orf19|HsT2329 family with sequence similarity 210 member A protein-coding 161-90 chr8 133516898 133517355 + 0.5 NA intron (NM_003033, intron 2 of 8) intron (NM_003033, intron 2 of 8) 54761 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 195.25-6 chr12 47957651 47958254 + 0.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR -5595 NM_001143841 79022 Hs.596726 NM_024056 ENSG00000134291 TMEM106C - transmembrane protein 106C protein-coding 161.75-27 chr19 35200068 35200520 + 0.5 NA Intergenic AluSq2|SINE|Alu 28431 NM_152481 148109 Hs.128069 NM_152481 ENSG00000177558 FAM187B TMEM162 family with sequence similarity 187 member B protein-coding 171 chr1 51352725 51353369 + 0.5 NA Intergenic MIRb|SINE|MIR -7931 NM_001144832 22996 Hs.112949 NM_001080494 ENSG00000085831 TTC39A C1orf34|DEME-6 tetratricopeptide repeat domain 39A protein-coding 153-70 chr4 164645208 164645652 + 0.5 NA Intergenic Intergenic -108701 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 154.5-28 chr14 60927384 60927827 + 0.5 NA intron (NM_001177963, intron 6 of 6) MER45C|DNA|hAT-Tip100 53474 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 163.5-61 chr2 135459430 135459945 + 0.5 NA intron (NM_001286569, intron 2 of 21) intron (NM_001286569, intron 2 of 21) 70898 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 179.75-21 chr17 43799943 43800614 + 0.5 NA TTS (NM_001330233) TTS (NM_001330233) 19843 NM_001353400 284067 Hs.252707 NM_001136483 ENSG00000231256 CFAP97D1 C17orf105 CFAP97 domain containing 1 protein-coding 181.25-56 chr8 68281890 68282553 + 0.5 NA Intergenic L1MD1|LINE|L1 -48152 NM_001195639 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 180.25-81 chrX 68313296 68313749 + 0.5 NA intron (NM_002547, intron 2 of 24) L1MA3|LINE|L1 119973 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 146.25-12 chr10 53364064 53364551 + 0.5 NA Intergenic MIRb|SINE|MIR -592607 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 239.25-2 chr1 108881427 108882174 + 0.5 NA intron (NM_001321038, intron 1 of 14) intron (NM_001321038, intron 1 of 14) 4815 NM_001321038 29899 Hs.584901 NM_013296 ENSG00000121957 GPSM2 CMCS|DFNB82|LGN|PINS G protein signaling modulator 2 protein-coding 158.5-24 chr14 81473160 81473718 + 0.5 NA 3' UTR (NM_005065, exon 21 of 21) 3' UTR (NM_005065, exon 21 of 21) -23282 NR_109999 100506700 Hs.116304 NR_109999 ENSG00000258675 LINC02308 - long intergenic non-protein coding RNA 2308 ncRNA 157.5-39 chr17 65591197 65591819 + 0.5 NA Intergenic AluSz|SINE|Alu -29860 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 156-45 chr20 5903481 5904067 + 0.5 NA Intergenic Intergenic -7736 NM_001819 1114 Hs.516874 NM_001819 ENSG00000089199 CHGB SCG1 chromogranin B protein-coding 215.25-14 chr16 56398906 56399667 + 0.5 NA intron (NM_001144, intron 8 of 13) L1MB5|LINE|L1 25703 NM_001323511 267 Hs.295137 NM_001144 ENSG00000159461 AMFR GP78|RNF45 autocrine motility factor receptor protein-coding 147.75-19 chr10 107690732 107691301 + 0.5 NA Intergenic Intergenic 378277 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 231.75-3 chr10 8902863 8903543 + 0.5 NA intron (NR_131944, intron 2 of 3) intron (NR_131944, intron 2 of 3) 5214 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 228.25-32 chr8 38304933 38305636 + 0.5 NA exon (NM_023034, exon 13 of 24) exon (NM_023034, exon 13 of 24) -36052 NM_001354454 84513 Hs.567619 NM_032483 ENSG00000147535 PLPP5 DPPL1|HTPAP|PPAPDC1B phospholipid phosphatase 5 protein-coding 177.25-77 chr8 141152129 141152801 + 0.5 NA intron (NM_001362798, intron 7 of 21) L1MB7|LINE|L1 23876 NR_148197 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 158-7 chr10 16651270 16651768 + 0.5 NA intron (NM_152724, intron 7 of 7) intron (NM_152724, intron 7 of 7) -129640 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 237.25-24 chr9 36757195 36757933 + 0.5 NA Intergenic MLT1J1|LTR|ERVL-MaLR 66035 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 176.5-41 chr2 139734272 139734855 + 0.5 NA Intergenic L1ME2z|LINE|L1 837239 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 158-83 chr7 3705575 3706025 + 0.5 NA intron (NM_152744, intron 4 of 44) L1PBa|LINE|L1 404548 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 226-16 chr3 7097406 7097890 + 0.5 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -203631 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 162.75-56 chr4 103772003 103772640 + 0.5 NA Intergenic MIR|SINE|MIR -52336 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 163.5-94 chr5 122197537 122198125 + 0.5 NA Intergenic Intergenic 37655 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 165.5-98 chr8 138430001 138430358 + 0.5 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 67082 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 201.25-19 chr19 49675324 49676013 + 0.5 NA Intergenic AluSx4|SINE|Alu -1484 NM_001536 3276 Hs.20521 NM_001536 ENSG00000126457 PRMT1 ANM1|HCP1|HRMT1L2|IR1B4 protein arginine methyltransferase 1 protein-coding 155.75-36 chr15 57827044 57827639 + 0.5 NA Intergenic Intergenic 120627 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 199.25-36 chr2 228968316 228968992 + 0.5 NA Intergenic MLT1F1|LTR|ERVL-MaLR 263438 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 155.25-88 chr8 85952828 85953263 + 0.5 NA Intergenic Intergenic 116623 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 157-93 chr8 79917731 79918196 + 0.5 NA TTS (NM_014018) TTS (NM_014018) -46226 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 207-11 chr14 60220670 60221285 + 0.5 NA Intergenic LTR53|LTR|ERVL -24773 NM_177952 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 214.25-3 chr1 114747999 114748754 + 0.5 NA intron (NM_001130523, intron 2 of 19) intron (NM_001130523, intron 2 of 19) 9608 NM_001007553 7812 Hs.69855 NM_007158 ENSG00000009307 CSDE1 D1S155E|UNR cold shock domain containing E1 protein-coding 174.75-31 chr2 55392374 55392914 + 0.5 NA intron (NM_001254943, intron 2 of 33) L1M5|LINE|L1 27212 NM_001135597 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL coiled-coil domain containing 88A protein-coding 154-102 chr8 21381271 21381880 + 0.5 NA Intergenic L1ME3D|LINE|L1 83336 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 175.25-56 chr6 37534729 37535162 + 0.5 NA non-coding (NR_126057, exon 3 of 4) non-coding (NR_126057, exon 3 of 4) 20477 NR_039669 100616413 NR_039669 ENSG00000263926 MIR4462 - microRNA 4462 ncRNA 185-16 chr12 15343869 15344502 + 0.5 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 21677 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 183.75-2 chr1 29064844 29065275 + 0.5 NA exon (NM_203342, exon 16 of 21) exon (NM_203342, exon 16 of 21) 57442 NM_001171868 399474 Hs.712722 NM_001003682 ENSG00000253304 TMEM200B TTMB transmembrane protein 200B protein-coding 168.25-47 chr3 123774676 123775139 + 0.5 NA intron (NM_053025, intron 4 of 33) intron (NM_053025, intron 4 of 33) 85263 NR_046629 100873940 Hs.667316 NR_046629 ENSG00000250174 MYLK-AS2 - MYLK antisense RNA 2 ncRNA 174-63 chr7 33598420 33598870 + 0.5 NA intron (NR_145411, intron 22 of 23) L1MC2|LINE|L1 -306270 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 152.25-10 chr1 216408326 216408840 + 0.5 NA intron (NM_206933, intron 3 of 71) MER44C|DNA|TcMar-Tigger 14813 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 158.25-21 chr11 41422776 41423392 + 0.5 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 36552 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 256.25-9 chr14 43682095 43682999 + 0.5 NA Intergenic Intergenic 824736 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 170-38 chr3 543486 544062 + 0.5 NA Intergenic L2c|LINE|L2 -48331 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 147.5-94 chr7 33679355 33679905 + 0.5 NA Intergenic HAL1|LINE|L1 -225285 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 178.75-16 chr14 42816380 42816836 + 0.5 NA Intergenic L1M3|LINE|L1 1209752 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 154-72 chr4 14300148 14300474 + 0.5 NA Intergenic Intergenic 188343 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 157.5-7 chr10 61065224 61065800 + 0.5 NA Intergenic Intergenic 49237 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 189.75-35 chr19 42241262 42241809 + 0.5 NA intron (NM_019884, intron 1 of 10) intron (NM_019884, intron 1 of 10) 1067 NM_019884 2931 Hs.466828 NM_019884 ENSG00000105723 GSK3A - glycogen synthase kinase 3 alpha protein-coding 156.75-34 chr13 101922547 101922896 + 0.5 NA intron (NM_175929, intron 1 of 4) intron (NM_175929, intron 1 of 4) -6076 NM_004115 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 240.5-30 chr9 28151846 28152738 + 0.5 NA intron (NM_152570, intron 5 of 6) MSTB1|LTR|ERVL-MaLR 567013 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 187.5-8 chr10 122102713 122103293 + 0.5 NA intron (NM_001291877, intron 5 of 19) intron (NM_001291877, intron 5 of 19) -9882 NM_001291879 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 194-13 chr11 5168674 5169294 + 0.5 NA Intergenic Intergenic 9727 NM_001348257 283110 NM_001348257 OR52Z1 OR52Z1P olfactory receptor family 52 subfamily Z member 1 (gene/pseudogene) protein-coding 170-49 chr5 72872138 72872557 + 0.5 NA intron (NM_001364293, intron 6 of 24) intron (NM_001364293, intron 6 of 24) -6244 NR_039968 100616152 NR_039968 ENSG00000263593 MIR4804 - microRNA 4804 ncRNA 164.75-37 chr2 55237056 55237566 + 0.5 NA exon (NM_001321002, exon 15 of 16) exon (NM_001321002, exon 15 of 16) 3147 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 187.25-10 chr10 90776490 90777042 + 0.5 NA intron (NM_019860, intron 1 of 2) intron (NM_019860, intron 1 of 2) 81273 NM_019859 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 170-6 chr1 151440284 151440798 + 0.5 NA intron (NM_001194938, intron 2 of 17) intron (NM_001194938, intron 2 of 17) 1664 NM_207171 23126 Hs.489873 NM_015100 ENSG00000143442 POGZ MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m pogo transposable element derived with ZNF domain protein-coding 159.25-19 chr14 58957298 58957735 + 0.5 NA intron (NR_110547, intron 4 of 5) intron (NR_110547, intron 4 of 5) 129228 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 155.75-103 chr8 114376049 114376444 + 0.5 NA Intergenic L1PA16|LINE|L1 -939307 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 164.25-78 chr6 126003076 126003620 + 0.5 NA intron (NM_001031712, intron 7 of 12) MER30|DNA|hAT-Charlie 16808 NR_146804 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 148-70 chr4 43570458 43570962 + 0.5 NA Intergenic Intergenic -78167 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 181.75-13 chr10 92330406 92330887 + 0.5 NA intron (NM_017824, intron 2 of 5) intron (NM_017824, intron 2 of 5) 39479 NM_017824 54708 Hs.573490 NM_017824 ENSG00000198060 MARCH5 MARCH-V|MITOL|RNF153 membrane associated ring-CH-type finger 5 protein-coding 181.25-64 chr9 104242031 104242397 + 0.5 NA Intergenic AluY|SINE|Alu -28015 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 177.75-53 chr4 97764640 97765085 + 0.5 NA intron (NM_174952, intron 9 of 10) intron (NM_174952, intron 9 of 10) 378614 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 168-17 chr11 9195483 9195908 + 0.5 NA intron (NR_145966, intron 4 of 21) intron (NR_145966, intron 4 of 21) 69631 NR_145966 23258 Hs.501857 NM_015213 ENSG00000184014 DENND5A EIEE49|RAB6IP1 DENN domain containing 5A protein-coding 174-31 chr2 198001562 198002196 + 0.5 NA intron (NM_006226, intron 1 of 5) MER1A|DNA|hAT-Charlie 197286 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 149.5-70 chr5 14072222 14072801 + 0.5 NA Intergenic Intergenic -70831 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 165.25-41 chr3 138796643 138797126 + 0.5 NA intron (NM_006219, intron 1 of 23) intron (NM_006219, intron 1 of 23) 38044 NM_006219 5291 Hs.239818 NM_006219 ENSG00000051382 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding 200.5-13 chr11 66934995 66935694 + 0.5 NA promoter-TSS (NR_036121) promoter-TSS (NR_036121) -838 NR_036121 100423029 NR_036121 ENSG00000266423 MIR3163 - microRNA 3163 ncRNA 155-101 chr8 70321972 70322412 + 0.5 NA intron (NM_001321703, intron 1 of 22) intron (NM_001321703, intron 1 of 22) 81198 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 207.25-50 chr6 127103166 127103639 + 0.5 NA Intergenic Intergenic -15269 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 150.5-62 chr2 80509756 80510254 + 0.5 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 196626 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 158.25-23 chr11 90888707 90889135 + 0.5 NA intron (NR_104190, intron 6 of 6) MIRc|SINE|MIR -19719 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 151.5-18 chr11 100798939 100799454 + 0.5 NA intron (NM_152432, intron 3 of 23) intron (NM_152432, intron 3 of 23) -111241 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 189.75-41 chr2 193126385 193126816 + 0.5 NA Intergenic Intergenic 376755 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 163-57 chr3 133971009 133971438 + 0.5 NA intron (NM_005630, intron 3 of 13) intron (NM_005630, intron 3 of 13) -41411 NR_161373 80111 Hs.287691 NM_025041 ENSG00000174640 C3orf36 - chromosome 3 open reading frame 36 ncRNA 173.5-83 chr7 51888698 51889384 + 0.5 NA Intergenic Intergenic -495785 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 155-41 chr2 42761467 42762008 + 0.5 NA TTS (NM_148962) TTS (NM_148962) 2524 NM_148962 165140 Hs.168439 NM_148962 ENSG00000162881 OXER1 GPCR|GPR170|TG1019 oxoeicosanoid receptor 1 protein-coding 197.75-55 chr5 64271707 64272313 + 0.5 NA intron (NM_001113561, intron 5 of 7) intron (NM_001113561, intron 5 of 7) 106167 NM_001323292 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 238.25-16 chr2 119276072 119276836 + 0.5 NA Intergenic L1M8|LINE|L1 -27383 NR_046721 100874111 Hs.704682 NR_046721 ENSG00000229867 STEAP3-AS1 - STEAP3 antisense RNA 1 ncRNA 164.75-36 chr2 32329449 32329952 + 0.5 NA Intergenic AluSp|SINE|Alu -27328 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 186-55 chr9 96651171 96651694 + 0.5 NA exon (NM_153698, exon 4 of 6) exon (NM_153698, exon 4 of 6) 3885 NM_153698 195827 Hs.44640 NM_153698 ENSG00000158122 PRXL2C AAED1|C9orf21 peroxiredoxin like 2C protein-coding 197.5-46 chr4 46114889 46115442 + 0.5 NA intron (NM_173536, intron 1 of 8) intron (NM_173536, intron 1 of 8) 8889 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 202.25-47 chr6 87350783 87351523 + 0.5 NA intron (NM_001010868, intron 3 of 4) intron (NM_001010868, intron 3 of 4) 6340 NM_001010868 206412 Hs.646309 NM_001010868 ENSG00000203872 C6orf163 - chromosome 6 open reading frame 163 protein-coding 184-49 chr6 121257982 121258529 + 0.5 NA intron (NR_104452, intron 15 of 35) L1MC5a|LINE|L1 76225 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 181.25-27 chr2 123663463 123663919 + 0.5 NA Intergenic Intergenic 361483 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 163.5-69 chr22 46814621 46815132 + 0.5 NA intron (NM_001284305, intron 4 of 12) AluSx1|SINE|Alu 40949 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 159-69 chr6 5626769 5627216 + 0.5 NA intron (NM_006567, intron 6 of 6) Tigger3c|DNA|TcMar-Tigger 68280 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 152.5-111 chr8 105570865 105571453 + 0.5 NA intron (NM_001362837, intron 4 of 7) MamRTE1|LINE|RTE-BovB 251616 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 257.75-19 chr4 89422710 89423732 + 0.5 NA Intergenic Intergenic -115421 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 149.5-10 chr10 21477510 21478090 + 0.5 NA Intergenic AluSx|SINE|Alu 18841 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 165.75-87 chr6 71208511 71209099 + 0.5 NA Intergenic L1ME1|LINE|L1 -80006 NM_024576 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 194-8 chr10 52507230 52507810 + 0.5 NA Intergenic LOR1-int|LTR|ERV1 -36987 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 161.75-30 chr2 36714424 36714914 + 0.5 NA intron (NM_001177969, intron 1 of 14) Zaphod3|DNA|hAT-Tip100 17962 NM_001328661 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 172.25-11 chr11 48136168 48136551 + 0.5 NA intron (NM_002843, intron 9 of 24) intron (NM_002843, intron 9 of 24) 39577 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 156.5-71 chr4 40069521 40070004 + 0.5 NA intron (NM_001318359, intron 1 of 18) AluJr|SINE|Alu -12563 NR_027277 344967 Hs.534633 NR_027277 ENSG00000205794 LOC344967 - acyl-CoA thioesterase 7 pseudogene pseudo 145.75-39 chr17 47350319 47350825 + 0.5 NA intron (NM_152347, intron 9 of 24) intron (NM_152347, intron 9 of 24) 26617 NM_001195192 124989 Hs.463303 NM_152347 ENSG00000178852 EFCAB13 C17orf57 EF-hand calcium binding domain 13 protein-coding 186.75-76 chr6 35727170 35727584 + 0.5 NA intron (NR_027117, intron 9 of 9) intron (NR_027117, intron 9 of 9) 1206 NM_001145775 2289 Hs.407190 NM_004117 ENSG00000096060 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FKBP prolyl isomerase 5 protein-coding 146.25-7 chr1 220075950 220076496 + 0.5 NA intron (NM_001286149, intron 1 of 7) AluY|SINE|Alu 13565 NM_001286149 10380 Hs.406134 NM_006085 ENSG00000162813 BPNT1 HEL20|PIP 3'(2'), 5'-bisphosphate nucleotidase 1 protein-coding 160.5-113 chr8 106880356 106880786 + 0.5 NA Intergenic Intergenic -110327 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 159.5-42 chr2 86787293 86787785 + 0.5 NA intron (NM_001145873, intron 8 of 8) MIRb|SINE|MIR 4175 NM_171827 925 Hs.85258 NM_001768 ENSG00000153563 CD8A CD8|Leu2|p32 CD8a molecule protein-coding 146.75-93 chr5 153128224 153128678 + 0.5 NA Intergenic Intergenic -156102 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 174.25-4 chr10 22582005 22582632 + 0.5 NA intron (NM_005028, intron 4 of 9) intron (NM_005028, intron 4 of 9) 131790 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 153.75-11 chr12 60918494 60918918 + 0.5 NA Intergenic L1ME3|LINE|L1 1229336 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 174-19 chr14 69005675 69006299 + 0.5 NA Intergenic Intergenic 26305 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 209.25-9 chr12 59865830 59866268 + 0.5 NA Intergenic LTR82B|LTR|ERVL 176679 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 232.5-49 chr7 109447869 109448465 + 0.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 512046 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 209.5-22 chr18 2590763 2591391 + 0.5 NA intron (NM_006101, intron 10 of 16) intron (NM_006101, intron 10 of 16) 19520 NM_006101 10403 Hs.414407 NM_006101 ENSG00000080986 NDC80 HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80 NDC80 kinetochore complex component protein-coding 189.25-48 chr6 145085327 145085753 + 0.5 NA Intergenic HAL1|LINE|L1 601337 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 154.5-88 chr7 38442524 38443010 + 0.5 NA intron (NM_001635, intron 11 of 20) L1ME1|LINE|L1 101190 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 159.75-51 chr2 206389653 206390087 + 0.5 NA Intergenic MER68|LTR|ERVL -53662 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 152.75-75 chr5 41120073 41120460 + 0.5 NA Intergenic L2b|LINE|L2 -48924 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 198.25-13 chr13 49715385 49716027 + 0.5 NA intron (NM_002267, intron 10 of 16) L1MC5a|LINE|L1 -24219 NR_103802 84650 Hs.433278 NM_032565 ENSG00000123179 EBPL EBRP EBP like protein-coding 199.25-47 chr4 84571251 84571716 + 0.5 NA Intergenic L2a|LINE|L2 -11644 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 169-55 chr6 43795790 43796288 + 0.5 NA Intergenic MER53|DNA|hAT 24071 NM_001287044 7422 Hs.73793 NM_003376 ENSG00000112715 VEGFA MVCD1|VEGF|VPF vascular endothelial growth factor A protein-coding 160.75-49 chr18 27290032 27290366 + 0.5 NA Intergenic Intergenic 52457 NR_134589 105372038 Hs.722107 NR_134589 ENSG00000264151 LOC105372038 - uncharacterized LOC105372038 ncRNA 170.75-28 chr2 29428950 29429483 + 0.5 NA intron (NM_004304, intron 4 of 28) L1M4b|LINE|L1 46161 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 190.75-66 chr8 15192117 15192662 + 0.5 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 46042 NM_139167 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 243.5-15 chr2 220684912 220685666 + 0.5 NA Intergenic Intergenic -778724 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 188.75-41 chr3 55501698 55502220 + 0.5 NA Intergenic Intergenic -14317 NM_003392 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 157.25-80 chr6 49244290 49244729 + 0.5 NA Intergenic AluJr|SINE|Alu 218744 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 185-42 chr21 27191263 27191812 + 0.5 NA Intergenic Intergenic -224449 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 172.75-51 chr5 28065273 28065842 + 0.5 NA Intergenic Intergenic 222108 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 203.5-47 chr3 188656024 188656752 + 0.5 NA intron (NM_005578, intron 6 of 10) intron (NM_005578, intron 6 of 10) -32393 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 174.75-37 chr20 15965082 15965616 + 0.5 NA intron (NM_001351663, intron 12 of 17) intron (NM_001351663, intron 12 of 17) 20533 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 209.25-26 chr2 171427437 171428201 + 0.5 NA intron (NM_001321157, intron 1 of 10) L2a|LINE|L2 6171 NM_001321162 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 208.25-7 chr1 188462125 188462563 + 0.5 NA Intergenic Charlie25|DNA|hAT-Charlie 1018716 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 202.75-9 chr11 47778084 47778869 + 0.5 NA non-coding (NR_134636, exon 36 of 36) non-coding (NR_134636, exon 36 of 36) -11135 NM_001318339 23360 Hs.6834 NM_015308 ENSG00000109920 FNBP4 FBP30 formin binding protein 4 protein-coding 172.5-61 chr5 37508580 37509183 + 0.5 NA intron (NM_001345998, intron 8 of 17) L1MD|LINE|L1 129563 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 219.75-26 chr22 19266314 19266923 + 0.5 NA intron (NM_007098, intron 2 of 32) L1PA8|LINE|L1 25101 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 172-43 chr2 198267537 198268137 + 0.5 NA Intergenic MIR|SINE|MIR 107260 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 171-25 chr16 53611590 53611998 + 0.5 NA intron (NM_001127897, intron 22 of 24) intron (NM_001127897, intron 22 of 24) 92065 NM_015272 23322 Hs.298382 NM_015272 ENSG00000103494 RPGRIP1L CORS3|FTM|JBTS7|MKS5|NPHP8|PPP1R134 RPGRIP1 like protein-coding 158.5-68 chr3 108085396 108085879 + 0.5 NA intron (NM_198793, intron 1 of 8) L2c|LINE|L2 5451 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 172-38 chr2 80653689 80654200 + 0.5 NA Intergenic L1MB4|LINE|L1 340565 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 162-29 chr15 80726835 80727364 + 0.5 NA intron (NM_021214, intron 1 of 2) intron (NM_021214, intron 1 of 2) 31789 NM_021214 58489 Hs.459072 NM_021214 ENSG00000136379 ABHD17C FAM108C1 abhydrolase domain containing 17C protein-coding 172.75-60 chr6 61939889 61940429 + 0.5 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 346066 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 171-48 chr4 104667853 104668468 + 0.5 NA intron (NR_125926, intron 6 of 9) THE1B-int|LTR|ERVL-MaLR -173266 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 150-96 chr9 27394795 27395260 + 0.5 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -97877 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 149.25-98 chr7 23347734 23348324 + 0.5 NA intron (NM_006547, intron 6 of 14) intron (NM_006547, intron 6 of 14) -48417 NR_145734 109616981 NR_145734 ENSG00000212264 SNORD65C - small nucleolar RNA, C/D box 65C snoRNA 224.5-26 chr5 163226056 163226774 + 0.5 NA Intergenic L1ME3G|LINE|L1 -211156 NM_001364019 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 169-37 chr2 76646201 76646765 + 0.5 NA Intergenic L1MB5|LINE|L1 -339482 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 151.25-43 chr2 103684353 103684930 + 0.5 NA Intergenic Intergenic -700212 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 165.5-30 chr13 36870647 36871224 + 0.5 NA intron (NM_001127217, intron 3 of 6) MER44B|DNA|TcMar-Tigger 49303 NM_005905 4093 Hs.123119 NM_005905 ENSG00000120693 SMAD9 MADH6|MADH9|PPH2|SMAD8|SMAD8/9|SMAD8A|SMAD8B SMAD family member 9 protein-coding 156.25-85 chr7 39933566 39933978 + 0.5 NA Intergenic Intergenic 15647 NR_158201 112267983 Hs.587424 NR_158201 LOC112267983 - uncharacterized LOC112267983 ncRNA 162-46 chr3 94100955 94101365 + 0.5 NA intron (NM_022072, intron 5 of 5) AluJr|SINE|Alu 38099 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 171.75-76 chr7 37226856 37227514 + 0.5 NA intron (NM_001206480, intron 8 of 21) intron (NM_001206480, intron 8 of 21) 126483 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 147.75-62 chr21 30678496 30678804 + 0.5 NA Intergenic Intergenic 35786 NM_001128077 337985 Hs.580878 NM_001128077 ENSG00000206104 KRTAP20-3 KAP19D|KAP20.3|KRTAP19P4 keratin associated protein 20-3 protein-coding 253.25-5 chr14 42801062 42801884 + 0.5 NA Intergenic Intergenic 1194617 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 147.5-97 chr7 77957212 77957558 + 0.5 NA 3' UTR (NM_001127358, exon 18 of 18) 3' UTR (NM_001127358, exon 18 of 18) 117255 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 165.5-57 chr3 24907393 24907834 + 0.5 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 78290 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 172.25-74 chr9 71372576 71373262 + 0.5 NA intron (NM_001366143, intron 1 of 25) L1PA10|LINE|L1 74052 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 159.25-39 chr2 158554928 158555284 + 0.5 NA intron (NM_001005476, intron 2 of 20) intron (NM_001005476, intron 2 of 20) 98154 NM_001005476 8502 Hs.407580 NM_003628 ENSG00000144283 PKP4 p0071 plakophilin 4 protein-coding 155-2 chr1 38535732 38536221 + 0.5 NA Intergenic L2b|LINE|L2 60780 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 172 chr1 30041263 30041882 + 0.5 NA Intergenic MER63B|DNA|hAT-Blackjack -3960 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 184.75-46 chr2 178922389 178923009 + 0.5 NA intron (NM_001316745, intron 6 of 11) intron (NM_001316745, intron 6 of 11) -115276 NM_133432 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 220.5-17 chr17 27154551 27155197 + 0.5 NA Intergenic Intergenic -65633 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 152.25-97 chr8 91876619 91877091 + 0.5 NA Intergenic L2a|LINE|L2 140825 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 232-7 chr10 23901611 23902129 + 0.5 NA intron (NM_001098500, intron 1 of 18) AluSz|SINE|Alu 207143 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 149.25-83 chr5 34546022 34546483 + 0.5 NA Intergenic LTR26B|LTR|ERV1 -110076 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 170.5-48 chr3 85601182 85601803 + 0.5 NA intron (NM_001256503, intron 2 of 9) intron (NM_001256503, intron 2 of 9) 96433 NM_001256502 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 188.5-46 chr4 30615582 30616272 + 0.5 NA Intergenic Intergenic -104442 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 198-49 chr9 28768764 28769463 + 0.5 NA intron (NM_001354574, intron 2 of 5) HAL1M8|LINE|L1 -49808 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 184.25-32 chr2 135711342 135711768 + 0.5 NA intron (NM_001282798, intron 22 of 25) AluJo|SINE|Alu -30300 NM_014607 23190 Hs.591242 NM_014607 ENSG00000144224 UBXN4 UBXD2|UBXDC1|erasin UBX domain protein 4 protein-coding 151-38 chr2 43804556 43805115 + 0.5 NA intron (NM_016008, intron 11 of 12) intron (NM_016008, intron 11 of 12) 30796 NM_015522 51626 Hs.371597 NM_015522 ENSG00000138036 DYNC2LI1 CGI-60|D2LIC|LIC3 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 147.5 chr1 73362207 73362715 + 0.5 NA Intergenic Intergenic 56291 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 218.5-25 chr3 187279279 187279771 + 0.5 NA intron (NR_033519, intron 1 of 9) intron (NR_033519, intron 1 of 9) -11747 NR_135551 101929130 NR_135551 ENSG00000283175 LOC101929130 - uncharacterized LOC101929130 ncRNA 196-31 chr3 18822097 18822606 + 0.5 NA Intergenic MER103C|DNA|hAT-Charlie -326159 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 147-88 chr5 105406503 105407060 + 0.5 NA Intergenic L1MEc|LINE|L1 307307 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 202.75-40 chr6 46374725 46375261 + 0.5 NA intron (NM_001251973, intron 2 of 4) AluSx1|SINE|Alu -49101 NM_005822 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 155-91 chr6 163158292 163158758 + 0.5 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) 33477 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 164.5-55 chr3 165468760 165469351 + 0.5 NA intron (NR_125764, intron 3 of 5) intron (NR_125764, intron 3 of 5) 262095 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 182.75-63 chr6 140177103 140177601 + 0.5 NA Intergenic Intergenic -27900 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 194.5-7 chr10 62469209 62469727 + 0.5 NA intron (NM_199451, intron 4 of 7) HSMAR2|DNA|TcMar-Mariner -50980 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 154.75-40 chr2 51080756 51081287 + 0.5 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 48420 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 161-45 chr2 49025320 49025887 + 0.5 NA intron (NM_000145, intron 2 of 9) intron (NM_000145, intron 2 of 9) -34000 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 183.25-10 chr10 100083335 100083891 + 0.5 NA Intergenic Intergenic -1744 NM_001308 1369 Hs.2246 NM_001308 ENSG00000120054 CPN1 CPN|SCPN carboxypeptidase N subunit 1 protein-coding 146-99 chr8 136084261 136084774 + 0.5 NA Intergenic MIRb|SINE|MIR -446281 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 178-71 chr8 125244233 125244855 + 0.5 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) 152684 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 203.5-15 chr12 84596963 84597630 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR 315503 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 198.75-6 chr10 112242473 112243205 + 0.5 NA Intergenic L1MA3|LINE|L1 -40561 NM_058222 6975 Hs.345485 NM_058222 ENSG00000119913 TECTB - tectorin beta protein-coding 165-53 chr22 33508762 33509375 + 0.5 NA intron (NM_133642, intron 6 of 14) intron (NM_133642, intron 6 of 14) -72399 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 153.75-60 chr4 86243327 86243753 + 0.5 NA intron (NM_001363657, intron 2 of 13) L2a|LINE|L2 111104 NM_001318067 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 160.5-31 chr14 59913368 59913992 + 0.5 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -6033 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 148.25-27 chr13 81818796 81819200 + 0.5 NA Intergenic AluSc8|SINE|Alu -592015 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 146.25-24 chr13 102483858 102484301 + 0.5 NA Intergenic L1M4|LINE|L1 -81636 NM_001321947 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 212-4 chr1 113596227 113596888 + 0.5 NA intron (NM_001142782, intron 6 of 20) L1MB7|LINE|L1 162598 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 245.5-36 chr8 86059147 86059880 + 0.5 NA intron (NM_033126, intron 2 of 2) MLT1D|LTR|ERVL-MaLR 10155 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 215.25-49 chr8 124165755 124166469 + 0.5 NA intron (NR_103547, intron 1 of 4) intron (NR_103547, intron 1 of 4) 5410 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 202-23 chr2 117452383 117452944 + 0.5 NA Intergenic L1MEd|LINE|L1 -362028 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 150.25-36 chr14 59220769 59221229 + 0.5 NA intron (NM_001270520, intron 1 of 24) MLT2B2|LTR|ERVL 32332 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 226.5-16 chr2 192560469 192561239 + 0.5 NA Intergenic L1MC3|LINE|L1 -188991 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 208.75-40 chr8 98492058 98492654 + 0.5 NA intron (NM_006281, intron 10 of 10) intron (NM_006281, intron 10 of 10) 65398 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 149.25-68 chr3 177527622 177528130 + 0.5 NA intron (NR_047568, intron 1 of 3) MER50|LTR|ERV1 85955 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 185.5-16 chr11 18834528 18835171 + 0.5 NA Intergenic L1PA15-16|LINE|L1 -42128 NM_001278236 84867 Hs.79092 NM_006906 ENSG00000110786 PTPN5 PTPSTEP|STEP|STEP61 protein tyrosine phosphatase non-receptor type 5 protein-coding 176-58 chr5 149750734 149751432 + 0.5 NA intron (NM_001172698, intron 1 of 10) intron (NM_001172698, intron 1 of 10) 18258 NR_029870 494327 NR_029870 ENSG00000199047 MIR378A MIR378|MIRN378|hsa-mir-378|hsa-mir-378a|miRNA378 microRNA 378a ncRNA 160.5-117 chr9 16869766 16870386 + 0.5 NA intron (NM_001317940, intron 1 of 5) intron (NM_001317940, intron 1 of 5) 594 NM_001317939 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 158.5-31 chr16 66950831 66951159 + 0.5 NA Intergenic AluSx|SINE|Alu -10271 NM_001185177 23491 Hs.268700 NM_012122 ENSG00000172828 CES3 ES31 carboxylesterase 3 protein-coding 191.75-5 chr10 13593793 13594547 + 0.5 NA intron (NM_003675, intron 1 of 9) Charlie1a|DNA|hAT-Charlie 7205 NM_003675 8559 Hs.660649 NM_003675 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 176.75-83 chr7 38562660 38563365 + 0.5 NA intron (NM_001635, intron 1 of 20) intron (NM_001635, intron 1 of 20) 68361 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 157-70 chr4 123356788 123357247 + 0.5 NA Intergenic Intergenic -39778 NM_199327 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 158.5-35 chr17 78255637 78256207 + 0.5 NA Intergenic AluJo|SINE|Alu 22570 NR_073178 100996291 Hs.744493 NR_073178 ENSG00000204277 LINC01993 - long intergenic non-protein coding RNA 1993 ncRNA 177-24 chr2 27362010 27362535 + 0.5 NA Intergenic AluSp|SINE|Alu -5238 NM_001035521 2976 Hs.75782 NM_001521 ENSG00000115207 GTF3C2 TFIIIC-BETA|TFIIIC110 general transcription factor IIIC subunit 2 protein-coding 150.25-95 chr6 156815846 156816258 + 0.5 NA intron (NM_020732, intron 1 of 19) intron (NM_020732, intron 1 of 19) -36321 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA 184.75-77 chr9 11994221 11994768 + 0.5 NA Intergenic Intergenic -698891 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 175-42 chr5 103493780 103494296 + 0.5 NA Intergenic L1MB1|LINE|L1 47947 NR_104670 102467212 Hs.641885 NR_104670 ENSG00000248757 LINC02115 - long intergenic non-protein coding RNA 2115 ncRNA 166-82 chr9 18081466 18082017 + 0.5 NA Intergenic (ATTTATA)n|Simple_repeat|Simple_repeat -392412 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 160-24 chr15 93498984 93499533 + 0.5 NA Intergenic Intergenic 293192 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 163.75-9 chr10 8108738 8109245 + 0.5 NA Intergenic AluJo|SINE|Alu 54303 NM_002051 2625 Hs.524134 NM_002051 ENSG00000107485 GATA3 HDR|HDRS GATA binding protein 3 protein-coding 179.25-72 chr8 48733996 48734541 + 0.5 NA intron (NM_024593, intron 1 of 5) intron (NM_024593, intron 1 of 5) 1000 NM_024593 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 173.5-3 chr1 88732593 88733229 + 0.5 NA intron (NM_001320708, intron 1 of 20) L1MA6|LINE|L1 -47707 NR_110682 101927891 Hs.637231 NR_110682 ENSG00000237505 PKN2-AS1 - PKN2 antisense RNA 1 ncRNA 171.25-58 chr8 56475081 56475590 + 0.5 NA intron (NR_125813, intron 1 of 3) L1ME3Cz|LINE|L1 -28694 NM_001135690 5179 Hs.339831 NM_006211 ENSG00000181195 PENK PE|PENK-A proenkephalin protein-coding 193.75-34 chr2 21639885 21640530 + 0.5 NA Intergenic L2c|LINE|L2 70445 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 167.5-66 chr4 53396818 53397244 + 0.5 NA intron (NM_001134937, intron 8 of 17) intron (NM_001134937, intron 8 of 17) 19378 NM_001134937 81608 Hs.555109 NM_030917 ENSG00000145216 FIP1L1 FIP1|Rhe|hFip1 factor interacting with PAPOLA and CPSF1 protein-coding 146-55 chr3 120600537 120600972 + 0.5 NA intron (NM_004547, intron 1 of 2) CR1_Mam|LINE|CR1 4418 NM_004547 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 159-11 chr11 9367996 9368557 + 0.5 NA Intergenic MER20B|DNA|hAT-Charlie -16376 NM_006391 10527 Hs.744911 NM_006391 ENSG00000205339 IPO7 Imp7|RANBP7 importin 7 protein-coding 146.5-13 chr10 116073964 116074387 + 0.5 NA intron (NM_145793, intron 7 of 8) MIR|SINE|MIR 120614 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 157.75-81 chr4 143188618 143189005 + 0.5 NA intron (NM_032557, intron 2 of 9) Kanga1|DNA|TcMar-Tc2 3894 NM_001290326 84640 Hs.480848 NM_032557 ENSG00000170185 USP38 HP43.8KD ubiquitin specific peptidase 38 protein-coding 186.25-29 chr20 22413757 22414260 + 0.5 NA intron (NR_027089, intron 1 of 3) intron (NR_027089, intron 1 of 3) 6635 NR_027090 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 179.25-47 chr3 115286044 115286571 + 0.5 NA Intergenic Intergenic -139019 NM_001348800 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 244.25-21 chr7 36977178 36977925 + 0.5 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) 7561 NM_001039459 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 172.75-42 chr3 69119568 69120012 + 0.5 NA exon (NM_198271, exon 2 of 3) exon (NM_198271, exon 2 of 3) 2805 NM_001304418 56203 Hs.350621 NM_198271 ENSG00000163380 LMOD3 NEM10 leiomodin 3 protein-coding 156.75-76 chr5 97347283 97347759 + 0.5 NA Intergenic L1PA13|LINE|L1 -157175 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 146.25-47 chr2 213242451 213242912 + 0.5 NA Intergenic Intergenic 41528 NR_144752 100130451 Hs.608433 NR_144752 SPAG16-DT - SPAG16 divergent transcript ncRNA 173.25-8 chr10 98615068 98615496 + 0.5 NA intron (NM_021828, intron 8 of 11) intron (NM_021828, intron 8 of 11) -168319 NM_001322487 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 206.25-2 chr1 105752383 105753194 + 0.5 NA Intergenic Intergenic -133853 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 176.5-72 chr6 48255707 48256267 + 0.5 NA Intergenic MIR|SINE|MIR -187298 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 159.75-79 chr4 181815636 181816145 + 0.5 NA Intergenic Intergenic 14083 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 152.5-109 chr8 33408717 33409099 + 0.5 NA intron (NM_032664, intron 3 of 4) L1ME2|LINE|L1 64238 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 173-5 chr1 74503410 74503932 + 0.5 NA intron (NM_015978, intron 23 of 24) intron (NM_015978, intron 23 of 24) 8943 NM_001364666 105378803 NM_001364665 ENSG00000162621 LRRC53 - leucine rich repeat containing 53 protein-coding 170.25-64 chr7 4031567 4032013 + 0.5 NA intron (NM_152744, intron 17 of 44) AluSx|SINE|Alu -97895 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 280.5-5 chr2 59374906 59375833 + 0.5 NA Intergenic L1MD1|LINE|L1 157661 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 278.5-14 chr5 163345803 163346646 + 0.5 NA Intergenic (TTTGT)n|Simple_repeat|Simple_repeat -91347 NM_001364019 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 187.75-12 chr11 26365590 26366318 + 0.5 NA intron (NM_031418, intron 1 of 26) MSTA-int|LTR|ERVL-MaLR 33824 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 185-17 chr12 17466336 17467015 + 0.5 NA Intergenic L1M4|LINE|L1 122403 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 208.25-13 chr11 91659932 91660743 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -564697 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 156.5-118 chrX 94339854 94340266 + 0.5 NA Intergenic Intergenic 665854 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 174-18 chr14 64119890 64120428 + 0.5 NA intron (NM_015180, intron 67 of 114) intron (NM_015180, intron 67 of 114) -25034 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 188-45 chr4 86986478 86987045 + 0.5 NA intron (NM_001166693, intron 2 of 20) L1MC5a|LINE|L1 -20227 NM_001313960 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 154.75-11 chr10 67540739 67541134 + 0.5 NA intron (NM_001127384, intron 3 of 17) MIR|SINE|MIR 124724 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 313.25-7 chr7 89206576 89207555 + 0.5 NA intron (NM_181646, intron 1 of 3) THE1B-int|LTR|ERVL-MaLR -411328 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 150.25-5 chr1 90739884 90740237 + 0.5 NA Intergenic Intergenic -22758 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 172.5-27 chr15 97026026 97026693 + 0.5 NA Intergenic ERVL-B4-int|LTR|ERVL 242924 NR_158221 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 168.5-40 chr18 1159125 1159553 + 0.5 NA Intergenic Intergenic 200290 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 251.25-2 chr1 61955357 61955927 + 0.5 NA intron (NM_001350145, intron 27 of 43) intron (NM_001350145, intron 27 of 43) 109567 NR_162146 113219465 NR_162146 MIR12132 - microRNA 12132 ncRNA 214.5-54 chrX 68621903 68622366 + 0.5 NA Intergenic L1MA2|LINE|L1 -25535 NM_001142503 9754 Hs.95140 NM_014725 ENSG00000130052 STARD8 ARHGAP38|DLC3|STARTGAP3 StAR related lipid transfer domain containing 8 protein-coding 156.5-99 chr6 131050102 131050622 + 0.5 NA intron (NM_001135554, intron 1 of 14) intron (NM_001135554, intron 1 of 14) 12883 NM_001431 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 180.75-21 chr16 61383489 61384092 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -328024 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 242.5-17 chr2 227962694 227963373 + 0.5 NA Intergenic MER50|LTR|ERV1 91402 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 145.75-87 chr4 82432218 82432645 + 0.5 NA intron (NM_021204, intron 1 of 5) AluSz|SINE|Alu 1841 NM_001292017 58478 Hs.18442 NM_021204 ENSG00000145293 ENOPH1 E1|MASA|MST145|mtnC enolase-phosphatase 1 protein-coding 210.75-13 chr13 37433381 37434029 + 0.5 NA Intergenic L2c|LINE|L2 51079 NR_125762 103695431 Hs.550637 NR_125762 ENSG00000230390 LINC01048 - long intergenic non-protein coding RNA 1048 ncRNA 198.5-29 chr2 156387195 156387765 + 0.5 NA Intergenic Intergenic -45360 NR_147695 440918 Hs.641142 NR_147695 FLJ46875 - uncharacterized LOC440918 ncRNA 203-12 chr11 77032275 77032681 + 0.5 NA Intergenic AluSx|SINE|Alu -1920 NM_138706 192134 Hs.352622 NM_138706 ENSG00000198488 B3GNT6 B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding 168.25-41 chr21 20289599 20290099 + 0.5 NA Intergenic L1MA3|LINE|L1 -31164 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 291.5-2 chr14_GL000225v1_random 101988 102848 + 0.5 NA NA BSR/Beta|Satellite|Satellite NA NA 146.75-22 chr11 98652106 98652578 + 0.5 NA Intergenic Intergenic -368607 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 184.25-62 chr7 30851868 30852344 + 0.5 NA intron (NR_037598, intron 12 of 19) intron (NR_037598, intron 12 of 19) -59588 NM_198098 358 Hs.76152 NM_000385 ENSG00000240583 AQP1 AQP-CHIP|CHIP28|CO aquaporin 1 (Colton blood group) protein-coding 146-31 chr17 57804830 57805225 + 0.5 NA Intergenic AluJr4|SINE|Alu 45017 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 213.75-44 chrX 99316555 99317391 + 0.5 NA Intergenic Intergenic 1093300 NM_001105243 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 147.5-77 chr5 56190115 56190582 + 0.5 NA intron (NM_024669, intron 2 of 11) L1MB3|LINE|L1 42982 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 215.25-19 chr2 169375976 169376562 + 0.5 NA Intergenic L1MEg|LINE|L1 -13735 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 164.75-72 chr6 53015192 53015841 + 0.5 NA intron (NM_014920, intron 8 of 13) MIRc|SINE|MIR 19896 NR_001445 125050 NR_001445 ENSG00000202198 RN7SK 7SK RNA component of 7SK nuclear ribonucleoprotein snRNA 184.75-72 chr6 168695114 168695840 + 0.5 NA Intergenic Intergenic 254293 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 192.5-17 chr15 69420941 69421418 + 0.5 NA intron (NM_138555, intron 3 of 22) AluSq2|SINE|Alu -6150 NR_132971 145694 Hs.147229 NR_132969 ENSG00000259426 LOC145694 - uncharacterized LOC145694 ncRNA 179.5-19 chr14 36493649 36494333 + 0.5 NA intron (NR_161365, intron 1 of 4) intron (NR_161365, intron 1 of 4) 19544 NR_161362 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H|SPH surfactant associated 3 ncRNA 146-73 chr5 131077992 131078323 + 0.5 NA Intergenic (GTTAG)n|Simple_repeat|Simple_repeat 87099 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 148.25-82 chr7 7547195 7547751 + 0.5 NA Intergenic L1PA2|LINE|L1 -11600 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 156.25-46 chr2 224965429 224965827 + 0.5 NA intron (NM_014689, intron 1 of 55) intron (NM_014689, intron 1 of 55) 16799 NM_001363762 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 215.75-32 chr6 50634510 50635094 + 0.5 NA Intergenic L1MA8|LINE|L1 -78742 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 222.5-49 chr7 79466408 79467058 + 0.5 NA non-coding (NR_038343, exon 4 of 4) non-coding (NR_038343, exon 4 of 4) 12773 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 193.5 chr1 45421091 45421667 + 0.5 NA intron (NM_007170, intron 3 of 10) intron (NM_007170, intron 3 of 10) 69784 NM_007170 10420 Hs.591499 NM_007170 ENSG00000070759 TESK2 - testis associated actin remodelling kinase 2 protein-coding 166-55 chr5 20516973 20517589 + 0.5 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 58432 NM_001349558 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 174.75-35 chr2 143820737 143821180 + 0.5 NA Intergenic Intergenic -116109 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 162.75-11 chr10 98206385 98206721 + 0.5 NA intron (NM_001256620, intron 3 of 8) L3|LINE|CR1 61641 NM_032211 84171 Hs.306814 NM_032211 ENSG00000138131 LOXL4 LOXC lysyl oxidase like 4 protein-coding 154.75-79 chr5 8310029 8310408 + 0.5 NA Intergenic Intergenic 147346 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 147-55 chr2 196949138 196949677 + 0.5 NA Intergenic Intergenic -22700 NM_001321100 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 146.5-52 chr2 83927104 83927487 + 0.5 NA Intergenic Intergenic -363387 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 165.5-19 chr11 58242863 58243253 + 0.5 NA Intergenic Intergenic -14140 NM_001004471 219960 Hs.553646 NM_001004471 ENSG00000180475 OR10Q1 OR11-233 olfactory receptor family 10 subfamily Q member 1 protein-coding 222.25-46 chrX 111576081 111576606 + 0.5 NA Intergenic LTR49-int|LTR|ERV1 64698 NM_001354473 401613 Hs.98581 NM_001354473 ENSG00000260802 SERTM2 DKFZp686D0853|LINC00890 serine rich and transmembrane domain containing 2 protein-coding 186.75-34 chr16 55127339 55127812 + 0.5 NA Intergenic Intergenic 196376 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 149-65 chr3 55684524 55684940 + 0.5 NA intron (NR_132749, intron 15 of 17) intron (NR_132749, intron 15 of 17) -25263 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 171.75-28 chr15 57405199 57405648 + 0.5 NA intron (NM_032866, intron 1 of 18) intron (NM_032866, intron 1 of 18) 28918 NM_032866 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 195.25-33 chr20 34586495 34587245 + 0.5 NA intron (NM_080476, intron 8 of 11) intron (NM_080476, intron 8 of 11) 28152 NM_032514 84557 Hs.632273 NM_032514 ENSG00000101460 MAP1LC3A ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3 microtubule associated protein 1 light chain 3 alpha protein-coding 171.5-46 chr2 101856036 101856433 + 0.5 NA intron (NM_145686, intron 13 of 30) (CATACA)n|Simple_repeat|Simple_repeat -127231 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 147-114 chr8 119097487 119097966 + 0.5 NA intron (NM_001324095, intron 5 of 7) intron (NM_001324095, intron 5 of 7) -28944 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 183.75-92 chr8 88624235 88624907 + 0.5 NA Intergenic L2|LINE|L2 -297088 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 181-44 chr7 16248479 16248915 + 0.5 NA intron (NR_038946, intron 2 of 4) L1PA6|LINE|L1 38211 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 195-30 chr20 29713424 29713943 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 164964 NR_133643 105379478 Hs.98121 NR_133643 FAM242B - family with sequence similarity 242 member B ncRNA 146.75-7 chr1 215810224 215810611 + 0.5 NA intron (NM_206933, intron 49 of 71) intron (NM_206933, intron 49 of 71) 243113 NM_016121 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 147.25-11 chr1 179416001 179416309 + 0.5 NA intron (NR_073544, intron 12 of 25) L1MA4|LINE|L1 50111 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 209.5-46 chr6 101532493 101533249 + 0.5 NA intron (NM_001166247, intron 1 of 16) L2c|LINE|L2 133886 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 155-10 chr10 55006450 55006948 + 0.5 NA intron (NM_001354404, intron 3 of 34) MST-int|LTR|ERVL-MaLR -205408 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 147.25-72 chr5 63404682 63405063 + 0.5 NA Intergenic L1MA10|LINE|L1 557420 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 180.75-32 chr2 79640947 79641504 + 0.5 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 8134 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 161.25-35 chr2 37995878 37996334 + 0.5 NA intron (NM_001170793, intron 6 of 9) L1ME3F|LINE|L1 40235 NR_102712 101410544 Hs.591566 NR_102712 RMDN2-AS1 - RMDN2 antisense RNA 1 ncRNA 176.25-42 chr20 11334139 11334562 + 0.5 NA Intergenic L3|LINE|CR1 -60967 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 211.75-32 chr5 101573957 101574625 + 0.5 NA Intergenic Intergenic -671009 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 158.75-7 chr10 88397824 88398457 + 0.5 NA intron (NM_018363, intron 4 of 6) MER74A|LTR|ERVL 185178 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 166-7 chr10 50331814 50332402 + 0.5 NA intron (NM_147156, intron 7 of 10) L2b|LINE|L2 -83498 NM_019893 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 271.5-15 chr6 56752244 56752864 + 0.5 NA intron (NM_001144770, intron 2 of 94) L1ME2|LINE|L1 91111 NM_183380 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 268.5 chr1 119387790 119388494 + 0.5 NA intron (NM_001005783, intron 6 of 8) intron (NM_001005783, intron 6 of 8) 19196 NR_046780 100874270 NR_046780 ENSG00000230921 HAO2-IT1 - HAO2 intronic transcript 1 ncRNA 155.5-74 chr4 62504854 62505295 + 0.5 NA Intergenic Intergenic -343309 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 154.5-13 chr10 44774228 44774631 + 0.5 NA Intergenic Intergenic -136887 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 178-33 chr2 63246576 63247091 + 0.5 NA intron (NR_148705, intron 13 of 16) Tigger4|DNA|TcMar-Tigger -127291 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 147.75-107 chr8 55211236 55211798 + 0.5 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 109489 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 151.5-85 chr6 117782073 117782391 + 0.5 NA Intergenic Intergenic 106763 NM_138459 116150 Hs.289008 NM_138459 ENSG00000153989 NUS1 C6orf68|CDG1AA|MGC:7199|MRD55|NgBR|TANGO14 NUS1 dehydrodolichyl diphosphate synthase subunit protein-coding 149.75-98 chr8 78507050 78507466 + 0.5 NA Intergenic Intergenic -9082 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 207-16 chr2 30059093 30059848 + 0.5 NA Intergenic L1M5|LINE|L1 -87537 NM_016061 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 146.75-69 chr3 6459098 6459430 + 0.5 NA Intergenic L1MB8|LINE|L1 346185 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 168.5-5 chr1 170617022 170617545 + 0.5 NA Intergenic Intergenic -46848 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 160-44 chr2 115495899 115496484 + 0.5 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 152376 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 171.75-90 chr8 123286458 123287049 + 0.5 NA Intergenic AluJr|SINE|Alu -11212 NR_037873 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 178.25-57 chr5 101127170 101127699 + 0.5 NA Intergenic Intergenic -224152 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 181.5-21 chr14 26885872 26886519 + 0.5 NA intron (NR_110041, intron 3 of 3) L1MB3|LINE|L1 13062 NR_110041 101927081 Hs.97955 NR_110041 ENSG00000257612 MIR4307HG - MIR4307 host gene ncRNA 246.25-6 chr10 28647687 28648238 + 0.5 NA Intergenic L1MA5A|LINE|L1 -29559 NM_012342 25805 Hs.533336 NM_012342 ENSG00000095739 BAMBI NMA BMP and activin membrane bound inhibitor protein-coding 178.75-66 chr8 83807537 83808121 + 0.5 NA Intergenic MER61B|LTR|ERV1 -374958 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 167-15 chr12 80018434 80019058 + 0.5 NA Intergenic Intergenic -80791 NM_001368062 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 230.75-11 chr13 63154343 63154942 + 0.5 NA Intergenic Intergenic 173452 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 151.75-95 chr7 4490910 4491463 + 0.5 NA Intergenic AluSq2|SINE|Alu -191109 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 157.75-110 chr8 123215987 123216567 + 0.5 NA promoter-TSS (NR_039808) promoter-TSS (NR_039808) -414 NR_039808 100616260 NR_039808 ENSG00000266324 MIR4663 - microRNA 4663 ncRNA 192-37 chr3 64123981 64124439 + 0.5 NA intron (NM_001370528, intron 7 of 7) Tigger1|DNA|TcMar-Tigger 20740 NR_046701 100874242 Hs.668874 NR_046701 PRICKLE2-AS2 - PRICKLE2 antisense RNA 2 ncRNA 227.25-29 chr8 131434915 131435568 + 0.5 NA Intergenic L1MDa|LINE|L1 -394332 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 226.75-12 chr2 41751157 41751768 + 0.5 NA Intergenic Intergenic -126093 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 193.75-6 chr10 2325922 2326309 + 0.5 NA Intergenic Intergenic -11041 NR_038884 399708 Hs.521270 NR_038884 LINC00701 - long intergenic non-protein coding RNA 701 ncRNA 178-34 chr2 76314231 76314811 + 0.5 NA Intergenic Intergenic -603606 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 192.25-40 chr22 24788112 24788635 + 0.5 NA Intergenic AluSq2|SINE|Alu -13653 NM_001008496 440822 Hs.448343 NM_001008496 ENSG00000184571 PIWIL3 HIWI3 piwi like RNA-mediated gene silencing 3 protein-coding 152-24 chr14 86089734 86090097 + 0.5 NA intron (NR_110155, intron 2 of 3) intron (NR_110155, intron 2 of 3) 155237 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 159.75-68 chr4 30661259 30661725 + 0.5 NA Intergenic MER4E1|LTR|ERV1 -58877 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 160.5-121 chr9 109094263 109094727 + 0.5 NA intron (NM_032012, intron 3 of 17) intron (NM_032012, intron 3 of 17) 25452 NM_032012 23731 Hs.308074 NM_032012 ENSG00000106771 TMEM245 C9orf5|CG-2|CG2 transmembrane protein 245 protein-coding 154.75-28 chr16 7502908 7503249 + 0.5 NA intron (NM_145893, intron 1 of 13) intron (NM_145893, intron 1 of 13) 170233 NM_145892 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 178-70 chr8 115911849 115912310 + 0.5 NA Intergenic L1MA10|LINE|L1 -243104 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 150-92 chr8 132467650 132467987 + 0.5 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 13277 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 160-88 chr8 122478633 122479065 + 0.5 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 89795 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 155.5-68 chr3 165493338 165493837 + 0.5 NA intron (NR_125764, intron 4 of 5) intron (NR_125764, intron 4 of 5) 286627 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 154.75-37 chr2 18752974 18753479 + 0.5 NA Intergenic Intergenic -163646 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 154.75-54 chr20 882218 882800 + 0.5 NA intron (NM_015985, intron 4 of 8) intron (NM_015985, intron 4 of 8) 33825 NM_015985 51378 Hs.278973 NM_015985 ENSG00000101280 ANGPT4 ANG3|ANG4 angiopoietin 4 protein-coding 219.25-14 chr15 85282110 85282863 + 0.5 NA Intergenic Intergenic 42135 NM_001310153 100133220 Hs.454625 NM_001310153 GOLGA6L3 - golgin A6 family like 3 protein-coding 202-41 chr5 117294838 117295341 + 0.5 NA Intergenic MIRc|SINE|MIR -120423 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 155.25-26 chr14 42825679 42826184 + 0.5 NA Intergenic L1M1|LINE|L1 1219075 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 256.75-11 chr14 26783671 26784282 + 0.5 NA intron (NR_147061, intron 6 of 6) intron (NR_147061, intron 6 of 6) -25372 NR_110556 102724890 Hs.569381 NR_110556 ENSG00000257185 LINC02293 - long intergenic non-protein coding RNA 2293 ncRNA 192.75-16 chr12 126089218 126089842 + 0.5 NA Intergenic L1MEc|LINE|L1 -6462 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 167-75 chr6 34864831 34865413 + 0.5 NA intron (NM_017754, intron 15 of 20) L1MA8|LINE|L1 22920 NM_005643 6882 Hs.112444 NM_005643 ENSG00000064995 TAF11 MGC:15243|PRO2134|TAF2I|TAFII28 TATA-box binding protein associated factor 11 protein-coding 190.25-59 chr8 113266538 113267286 + 0.5 NA intron (NM_001363185, intron 3 of 66) L1MA4A|LINE|L1 110240 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 244-14 chr2 158392790 158393549 + 0.5 NA intron (NM_138803, intron 1 of 13) intron (NM_138803, intron 1 of 13) 63584 NM_001301684 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 258.25-20 chr6 162834382 162835381 + 0.5 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 106911 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 152.75-32 chr14 84180116 84180528 + 0.5 NA Intergenic Intergenic -1091610 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 190-67 chr8 63804486 63804877 + 0.5 NA Intergenic Intergenic 35251 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 263-5 chr15 42944126 42945087 + 0.5 NA 3' UTR (NM_174916, exon 47 of 47) 3' UTR (NM_174916, exon 47 of 47) -23828 NM_173500 146057 Hs.646511 NM_173500 ENSG00000128881 TTBK2 SCA11|TTBK tau tubulin kinase 2 protein-coding 155.5-10 chr10 66400368 66400737 + 0.5 NA intron (NM_001127384, intron 11 of 17) (AT)n|Simple_repeat|Simple_repeat -525484 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 166-64 chr6 137899031 137899494 + 0.5 NA Intergenic Intergenic -31029 NR_049793 100130476 Hs.598050 NR_049793 ENSG00000237499 WAKMAR2 lnc-TNFAIP3 wound and keratinocyte migration associated lncRNA 2 ncRNA 157.25 chr1 64731226 64731723 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -13499 NM_001366165 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 190.75-6 chr1 208931765 208932260 + 0.5 NA Intergenic MER5A1|DNA|hAT-Charlie -40442 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 149.75-57 chr3 103313414 103313856 + 0.5 NA Intergenic Intergenic 210481 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 182.5-16 chr14 50606949 50607670 + 0.5 NA intron (NM_015915, intron 6 of 13) intron (NM_015915, intron 6 of 13) 47284 NM_015915 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 178.75-14 chr12 98769231 98769709 + 0.5 NA intron (NM_001352221, intron 8 of 9) intron (NM_001352221, intron 8 of 9) 124170 NM_181869 317 Hs.552567 NM_001160 ENSG00000120868 APAF1 APAF-1|CED4 apoptotic peptidase activating factor 1 protein-coding 167.75-94 chr8 111534883 111535385 + 0.5 NA Intergenic Intergenic 158495 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 164.5-10 chr11 81831325 81831776 + 0.5 NA Intergenic L1MA4A|LINE|L1 59286 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 243.25-14 chr22 25148502 25149118 + 0.5 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) -36118 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 175.5-46 chr2 112066616 112067273 + 0.5 NA exon (NM_032824, exon 4 of 19) exon (NM_032824, exon 4 of 19) 11675 NM_032824 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 165.5-66 chr4 59267710 59268245 + 0.5 NA Intergenic Tigger2|DNA|TcMar-Tigger 254404 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 168.75-44 chr2 59866355 59866884 + 0.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 516417 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 147.25-9 chr1 119150130 119150584 + 0.5 NA intron (NR_125975, intron 3 of 6) MIR3|SINE|MIR -9685 NM_015836 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 NEMMLAS|TrpRS|mtTrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 192.25-28 chr17 52704130 52704869 + 0.5 NA Intergenic L1MA7|LINE|L1 -157622 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 155.25-7 chr1 210286091 210286700 + 0.5 NA Intergenic Intergenic -41857 NM_001122834 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 172.75-22 chr14 81229904 81230358 + 0.5 NA Intergenic Tigger7|DNA|TcMar-Tigger -8741 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 203.75-46 chr8 82588909 82589546 + 0.5 NA Intergenic Intergenic -322877 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 187.25-63 chr7 50495772 50496342 + 0.5 NA intron (NM_001242888, intron 6 of 12) intron (NM_001242888, intron 6 of 12) -35702 NR_033845 100129427 Hs.680434 NR_033845 ENSG00000226122 DDC-AS1 - DDC antisense RNA 1 ncRNA 151.5-100 chr8 86786757 86787252 + 0.5 NA Intergenic L2a|LINE|L2 -43329 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 153.5-94 chr7 13381022 13381507 + 0.5 NA Intergenic L1MA1|LINE|L1 605250 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 270.75-5 chr10 69920444 69921232 + 0.5 NA intron (NM_001368895, intron 18 of 34) MIRc|SINE|MIR 118932 NM_001368897 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 148.5-88 chr7 7684331 7684690 + 0.5 NA intron (NM_001302350, intron 3 of 4) MER2|DNA|TcMar-Tigger 34097 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 173.25-6 chr10 67802132 67802598 + 0.5 NA intron (NM_021800, intron 4 of 4) MER65C|LTR|ERV1 35814 NM_201262 56521 Hs.260720 NM_021800 ENSG00000108176 DNAJC12 HPANBH4|JDP1 DnaJ heat shock protein family (Hsp40) member C12 protein-coding 157.5-31 chr14 72717221 72717626 + 0.5 NA intron (NM_001280544, intron 5 of 9) MIRb|SINE|MIR 175226 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 172.75-18 chr12 44258161 44258805 + 0.5 NA intron (NM_001286213, intron 4 of 6) intron (NM_001286213, intron 4 of 6) 422402 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 147-112 chr8 81115970 81116348 + 0.5 NA Intergenic Intergenic -4091 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 192.5-44 chr4 66506951 66507546 + 0.5 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 230424 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 199-16 chr2 109156223 109156794 + 0.5 NA intron (NM_001099289, intron 1 of 9) AluSq|SINE|Alu -14920 NR_036223 100422863 NR_036223 ENSG00000264934 MIR4265 - microRNA 4265 ncRNA 171.25-17 chr12 89205672 89206154 + 0.5 NA Intergenic Intergenic 146588 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 148.75-40 chr19 37995580 37996046 + 0.5 NA intron (NM_015073, intron 1 of 21) intron (NM_015073, intron 1 of 21) 88605 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 154.25-86 chr8 79457760 79458348 + 0.5 NA Intergenic Intergenic 125866 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 194.75-34 chr4 82596049 82596635 + 0.5 NA Intergenic HAL1b|LINE|L1 25095 NR_024088 439934 Hs.457189 NM_001033661 ENSG00000231782 LINC00575 C4orf11 long intergenic non-protein coding RNA 575 ncRNA 149-11 chr11 41057819 41058215 + 0.5 NA intron (NM_001258419, intron 1 of 6) MER52A|LTR|ERV1 401619 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 157.25-94 chr8 4243220 4243663 + 0.5 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 751473 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 150.25-12 chr10 19352453 19352880 + 0.5 NA intron (NM_001142308, intron 26 of 39) intron (NM_001142308, intron 26 of 39) 303865 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 164.25-29 chr14 78161083 78161558 + 0.5 NA Intergenic Intergenic -9053 NM_001366425 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 149.75-78 chr5 153757267 153757679 + 0.5 NA intron (NM_000827, intron 11 of 15) L1MA6|LINE|L1 141514 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 200-50 chr9 116919159 116919817 + 0.5 NA intron (NM_014010, intron 9 of 21) LTR107_Mam|LTR|LTR 232183 NM_001099679 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|LGMDR8|TATIP tripartite motif containing 32 protein-coding 166.75-54 chr3 98027532 98028181 + 0.5 NA intron (NM_001105580, intron 2 of 9) Charlie2b|DNA|hAT-Charlie 7448 NM_001105580 200959 Hs.534578 NM_001105580 ENSG00000183185 GABRR3 - gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene) protein-coding 183.25-33 chr18 41350133 41350687 + 0.5 NA Intergenic MIR|SINE|MIR 170267 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 156.5-58 chr2 235611650 235612144 + 0.5 NA intron (NM_001037131, intron 1 of 17) intron (NM_001037131, intron 1 of 17) -93976 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 185.75-51 chr3 74315268 74315955 + 0.5 NA intron (NM_020872, intron 12 of 21) L1MCa|LINE|L1 205529 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 178.25-14 chr13 28492699 28493399 + 0.5 NA intron (NM_002019, intron 1 of 29) intron (NM_002019, intron 1 of 29) 2079 NM_002019 2321 Hs.594454 NM_002019 ENSG00000102755 FLT1 FLT|FLT-1|VEGFR-1|VEGFR1 fms related tyrosine kinase 1 protein-coding 231.5-29 chr5 163195581 163196496 + 0.5 NA Intergenic Intergenic -241533 NM_001364019 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 158.75-88 chr9 24087134 24087572 + 0.5 NA Intergenic Intergenic -236752 NM_001351460 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 159.75-65 chr3 110083926 110084381 + 0.5 NA Intergenic L3|LINE|CR1 481325 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 222.5-3 chr1 68564993 68565558 + 0.5 NA Intergenic LTR78|LTR|ERV1 -68193 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 172-64 chr5 13446850 13447315 + 0.5 NA Intergenic L2a|LINE|L2 -414196 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 205.75-46 chr4 101311102 101311780 + 0.5 NA intron (NM_001130691, intron 1 of 12) intron (NM_001130691, intron 1 of 12) 18973 NR_031656 100302193 NR_031656 ENSG00000221265 MIR1255A MIRN1255A|hsa-mir-1255a microRNA 1255a ncRNA 202.5-40 chr3 45742700 45743159 + 0.5 NA intron (NM_001319071, intron 19 of 19) 7SLRNA|srpRNA|srpRNA 53533 NM_001319073 22908 Hs.156509 NM_014016 ENSG00000211456 SACM1L SAC1 SAC1 like phosphatidylinositide phosphatase protein-coding 151.75-109 chr8 113009716 113010274 + 0.5 NA intron (NM_198123, intron 6 of 70) intron (NM_198123, intron 6 of 70) 366502 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 172.5-46 chr3 97122618 97123009 + 0.5 NA intron (NM_001080448, intron 3 of 17) (TA)n|Simple_repeat|Simple_repeat 308219 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 154.5-90 chr7 107149224 107149728 + 0.5 NA intron (NM_002736, intron 6 of 10) MLT1A0|LTR|ERVL-MaLR -19485 NM_001244262 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 187.25-33 chr2 26997819 26998534 + 0.5 NA intron (NR_149018, intron 1 of 5) L3|LINE|CR1 16412 NR_149018 100129724 Hs.666730 NR_149018 ENSG00000205500 LOC100129724 - uncharacterized LOC100129724 ncRNA 158.5-29 chr15 70023177 70023659 + 0.5 NA Intergenic Intergenic 56050 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 172.5-30 chr17 14424088 14424571 + 0.5 NA Intergenic Intergenic 120589 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 159.75-60 chr3 77655143 77655596 + 0.5 NA Intergenic Intergenic 393594 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 175.5-27 chr14 47855714 47856144 + 0.5 NA Intergenic Intergenic -60915 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 203.25-25 chr21 24392354 24393014 + 0.5 NA Intergenic Intergenic -36056 NR_135520 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 155.5-49 chr2 139839583 139839975 + 0.5 NA Intergenic L1MA1|LINE|L1 746906 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 189.25-13 chr12 57097028 57097702 + 0.5 NA intron (NM_001178080, intron 18 of 20) MIR3|SINE|MIR 8251 NM_001330305 4665 Hs.159223 NM_005967 ENSG00000166886 NAB2 MADER NGFI-A binding protein 2 protein-coding 198.25-8 chr12 14344671 14345158 + 0.5 NA Intergenic HAL1|LINE|L1 -20718 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 175.25-59 chr6 120933485 120933878 + 0.5 NA Intergenic Intergenic 400799 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 151.25-94 chr8 115716303 115716784 + 0.5 NA Intergenic Intergenic -47568 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 216.5-4 chr10 32694367 32694872 + 0.5 NA intron (NM_001321115, intron 24 of 43) intron (NM_001321115, intron 24 of 43) 206853 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 161-66 chr4 180193665 180194110 + 0.5 NA Intergenic Intergenic 965262 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 145.75-114 chr7 41481209 41481622 + 0.5 NA Intergenic L1ME4a|LINE|L1 -212504 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 231.75-10 chr14 102740427 102740961 + 0.5 NA Intergenic AluJr|SINE|Alu -36755 NM_003300 7187 Hs.510528 NM_003300 ENSG00000131323 TRAF3 CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118 TNF receptor associated factor 3 protein-coding 202.25-17 chr13 109508887 109509641 + 0.5 NA Intergenic Intergenic 108568 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 160.75-89 chr5 111862596 111863103 + 0.5 NA intron (NM_001142474, intron 2 of 3) L2b|LINE|L2 -49659 NR_046678 100873948 Hs.147716 NR_046678 ENSG00000250095 NREP-AS1 - NREP antisense RNA 1 ncRNA 194.25-17 chr2 5583565 5584148 + 0.5 NA Intergenic AluY|SINE|Alu 107262 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 148-85 chr7 37022778 37023252 + 0.5 NA intron (NM_001206480, intron 15 of 21) L1ME3A|LINE|L1 25219 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 154.75-2 chr1 37523043 37523430 + 0.5 NA Intergenic MER65-int|LTR|ERV1 -8470 NR_073092 64769 Hs.17118 NM_022756 ENSG00000163875 MEAF6 C1orf149|CENP-28|EAF6|NY-SAR-91 MYST/Esa1 associated factor 6 protein-coding 233-3 chr10 62859212 62859935 + 0.5 NA Intergenic AluSx1|SINE|Alu -40406 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 203.75-23 chr3 60206477 60206988 + 0.5 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -125823 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 149.25-123 chrX 82554652 82555113 + 0.5 NA Intergenic Intergenic -953408 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 166-19 chr12 126041963 126042512 + 0.5 NA Intergenic Intergenic -53755 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 146.5-84 chr5 22611727 22612214 + 0.5 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 241374 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 239.25-15 chr2 214408581 214409421 + 0.5 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -2053 NR_159945 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 161-72 chr5 129506871 129507234 + 0.5 NA intron (NM_133638, intron 2 of 22) intron (NM_133638, intron 2 of 22) -46363 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 201.75-8 chr11 106898065 106898677 + 0.5 NA intron (NM_001256424, intron 4 of 8) L1MC1|LINE|L1 120105 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 164-78 chr7 47230850 47231373 + 0.5 NA Intergenic L1M4|LINE|L1 233692 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 154.25-34 chr15 59200296 59200857 + 0.5 NA intron (NM_004998, intron 16 of 27) FLAM_C|SINE|Alu -6267 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 169.75-31 chr14 52850710 52851199 + 0.5 NA Intergenic AluY|SINE|Alu -59347 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 249-14 chr6 148857614 148858247 + 0.5 NA intron (NM_005715, intron 1 of 7) intron (NM_005715, intron 1 of 7) 106754 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 204.5-20 chr2 209433243 209433817 + 0.5 NA intron (NM_001039538, intron 1 of 14) intron (NM_001039538, intron 1 of 14) 9483 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 153.75-46 chr3 110196448 110196970 + 0.5 NA Intergenic Intergenic 593881 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 157.75-61 chr20 54427988 54428395 + 0.5 NA Intergenic L2a|LINE|L2 -47402 NM_018431 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 213.25-44 chr7 89146020 89146843 + 0.5 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -350694 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 182.25-40 chr4 54121221 54121828 + 0.5 NA Intergenic L1MEd|LINE|L1 21361 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 264.75-5 chr14 65327838 65328507 + 0.5 NA Intergenic AluSx1|SINE|Alu 7011 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 182-21 chr15 81297836 81298276 + 0.5 NA intron (NR_148035, intron 13 of 18) intron (NR_148035, intron 13 of 18) 1086 NM_004513 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 149.25-60 chr3 27146078 27146518 + 0.5 NA intron (NM_001304384, intron 10 of 16) intron (NM_001304384, intron 10 of 16) 70225 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 171-15 chr11 110730291 110730899 + 0.5 NA Intergenic Intergenic -17406 NM_001258418 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 152.5-98 chr6 112855726 112856170 + 0.5 NA Intergenic Intergenic 508618 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 207 chr1 49667526 49667971 + 0.5 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) -195663 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 163.5-34 chr14 75786276 75786672 + 0.5 NA intron (NM_015072, intron 26 of 31) L1MB7|LINE|L1 125228 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 154-84 chr5 41172120 41172508 + 0.5 NA exon (NM_001115131, exon 9 of 18) exon (NM_001115131, exon 9 of 18) 41218 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 171.25-21 chr14 70882392 70882871 + 0.5 NA Intergenic Intergenic -24828 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 192-27 chr2 54906627 54907301 + 0.5 NA intron (NM_001039753, intron 23 of 40) intron (NM_001039753, intron 23 of 40) 103308 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 158.25-29 chr12 827335 827887 + 0.5 NA intron (NM_001184985, intron 3 of 27) AluSz|SINE|Alu 74688 NM_001184985 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 174.75-72 chr9 99876585 99877005 + 0.5 NA Intergenic MIRb|SINE|MIR 29806 NR_038853 441461 Hs.163155 NR_038853 ENSG00000255145 STX17-AS1 - STX17 antisense RNA 1 ncRNA 203.5-68 chr7 54912401 54912999 + 0.5 NA Intergenic L1M5|LINE|L1 -106317 NM_005228 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 192.25-10 chr11 11453535 11454107 + 0.5 NA intron (NM_001363464, intron 1 of 9) THE1B|LTR|ERVL-MaLR -100571 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 187.75-62 chr6 62270610 62270999 + 0.5 NA intron (NR_146874, intron 1 of 13) MIRc|SINE|MIR 15421 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 234-15 chr5 83550780 83551696 + 0.5 NA intron (NM_001164098, intron 9 of 13) AluSx|SINE|Alu 11076 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 180.25-53 chr4 122661125 122661657 + 0.5 NA intron (NR_104126, intron 10 of 10) intron (NR_104126, intron 10 of 10) -40325 NM_021803 59067 Hs.567559 NM_021803 ENSG00000138684 IL21 CVID11|IL-21|Za11 interleukin 21 protein-coding 204.75-59 chr8 133894516 133895089 + 0.5 NA intron (NR_125424, intron 1 of 3) L2c|LINE|L2 8306 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 150.5-90 chr5 3714389 3714737 + 0.5 NA Intergenic MER34|LTR|ERV1 118731 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 147-61 chr3 25422823 25423272 + 0.5 NA intron (NM_001290300, intron 1 of 7) MER58A|DNA|hAT-Charlie -5216 NM_016152 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 211-20 chr2 73594251 73594745 + 0.5 NA intron (NM_015120, intron 16 of 22) L3|LINE|CR1 47924 NM_003960 9027 Hs.14637 NM_003960 ENSG00000144035 NAT8 ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510 N-acetyltransferase 8 (putative) protein-coding 157.75-21 chr11 5432750 5433353 + 0.5 NA intron (NM_001005567, intron 1 of 4) intron (NM_001005567, intron 1 of 4) 8502 NM_001005288 390063 Hs.553732 NM_001005288 ENSG00000167359 OR51I1 - olfactory receptor family 51 subfamily I member 1 protein-coding 148.75-60 chr3 12705868 12706288 + 0.5 NA Intergenic L1M5|LINE|L1 -41877 NM_002880 5894 Hs.159130 NM_002880 ENSG00000132155 RAF1 CMD1NN|CRAF|NS5|Raf-1|c-Raf Raf-1 proto-oncogene, serine/threonine kinase protein-coding 156-84 chr7 4955645 4956257 + 0.5 NA intron (NR_072989, intron 1 of 8) AluSx1|SINE|Alu 3236 NR_072989 221938 Hs.558694 NM_198403 ENSG00000136297 MMD2 PAQR10 monocyte to macrophage differentiation associated 2 protein-coding 151.75-24 chr13 37696978 37697547 + 0.5 NA intron (NM_001135958, intron 2 of 9) intron (NM_001135958, intron 2 of 9) -98418 NM_001135935 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 168.75-93 chr7 15760236 15760857 + 0.5 NA Intergenic L1M4|LINE|L1 72168 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 151.75-54 chr2 202814115 202814560 + 0.5 NA intron (NM_001288623, intron 8 of 12) MSTB2|LTR|ERVL-MaLR 14897 NM_001288624 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 179.25-48 chr3 122447544 122448066 + 0.5 NA intron (NR_026698, intron 10 of 14) L1PA6|LINE|L1 31599 NR_125405 102723582 Hs.675056 NR_125405 ENSG00000272758 LOC102723582 - uncharacterized LOC102723582 ncRNA 155.25-73 chr5 84576012 84576560 + 0.5 NA Intergenic L1MA7|LINE|L1 -191406 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 154-89 chr5 105430608 105431139 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 331399 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 179-61 chr8 110826184 110826681 + 0.5 NA Intergenic Intergenic 201001 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 156.25-37 chr2 53656633 53657115 + 0.5 NA Intergenic L1MC5|LINE|L1 -110909 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 162-28 chr15 64056127 64056759 + 0.5 NA Intergenic MER5A|DNA|hAT-Charlie -9958 NM_014326 23604 Hs.237886 NM_014326 ENSG00000035664 DAPK2 DRP-1|DRP1 death associated protein kinase 2 protein-coding 157.75-102 chr7 16437027 16437548 + 0.5 NA Intergenic Intergenic -15749 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 195.25-44 chr4 121622945 121623452 + 0.5 NA Intergenic Intergenic 73782 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 184.5-15 chr10 115610735 115611347 + 0.5 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 517676 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 177.25-53 chr4 143267456 143267990 + 0.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR -69153 NM_207123 2549 Hs.80720 NM_002039 ENSG00000109458 GAB1 DFNB26 GRB2 associated binding protein 1 protein-coding 232.5 chr1 42544921 42545690 + 0.5 NA intron (NM_001080850, intron 4 of 16) intron (NM_001080850, intron 4 of 16) 12285 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 168-49 chr3 97215766 97216303 + 0.5 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) -223573 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 148-91 chr8 89772840 89773397 + 0.5 NA intron (NM_003821, intron 6 of 10) L2a|LINE|L2 15302 NM_003821 8767 Hs.103755 NM_003821 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor interacting serine/threonine kinase 2 protein-coding 164-7 chr10 70416107 70416508 + 0.5 NA intron (NM_004096, intron 1 of 2) AluSc|SINE|Alu 12162 NM_004096 1979 Hs.621200 NM_004096 ENSG00000148730 EIF4EBP2 4EBP2|PHASII eukaryotic translation initiation factor 4E binding protein 2 protein-coding 156.75-20 chr11 30611409 30611935 + 0.5 NA Intergenic L1ME2|LINE|L1 -25319 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 153.25-13 chr1 171009455 171009952 + 0.5 NA intron (NM_001163629, intron 15 of 21) L1MC5a|LINE|L1 74169 NM_025063 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 158-31 chr2 34620123 34620480 + 0.5 NA Intergenic Intergenic -57256 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 151.5-68 chr3 115991243 115991716 + 0.5 NA intron (NM_001318915, intron 3 of 8) intron (NM_001318915, intron 3 of 8) -86353 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 190.25-39 chr5 138559513 138560214 + 0.5 NA promoter-TSS (NR_145752) promoter-TSS (NR_145752) -822 NR_145752 109617013 NR_145752 ENSG00000222937 SNORD63B - small nucleolar RNA, C/D box 63B snoRNA 211.5-6 chr10 36784459 36785032 + 0.5 NA Intergenic Intergenic -341112 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 199.75-5 chr1 224112245 224112953 + 0.5 NA Intergenic L1MC4|LINE|L1 -1512 NM_001136115 23219 Hs.64691 NM_015176 ENSG00000143756 FBXO28 CENP-30|Fbx28 F-box protein 28 protein-coding 171.25-35 chr2 167459710 167460163 + 0.5 NA Intergenic L1MB3|LINE|L1 272564 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 167-29 chr15 77765872 77766267 + 0.5 NA intron (NM_001301186, intron 2 of 5) intron (NM_001301186, intron 2 of 5) 20980 NM_001301195 84894 Hs.656765 NM_032808 ENSG00000169783 LINGO1 LERN1|LRRN6A|MRT64|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 182.75-65 chr6 164844221 164844734 + 0.5 NA Intergenic L1ME3A|LINE|L1 -22414 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 179.5-60 chr5 19719014 19719433 + 0.5 NA intron (NM_001349562, intron 5 of 13) intron (NM_001349562, intron 5 of 13) 167049 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 209-9 chr11 21552399 21553113 + 0.5 NA intron (NM_001288713, intron 17 of 20) intron (NM_001288713, intron 17 of 20) -640329 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 238.25-27 chr6 62464585 62465323 + 0.5 NA Intergenic Intergenic -178727 NM_001350622 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 172.75-40 chr21 29020494 29021131 + 0.5 NA Intergenic L1ME2z|LINE|L1 -1441 NM_001320724 10069 Hs.713123 NM_016940 ENSG00000156253 RWDD2B C21orf6|GL011 RWD domain containing 2B protein-coding 164.75-75 chr6 121726802 121727207 + 0.5 NA Intergenic MIR|SINE|MIR 291358 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 161.75-19 chr15 57062816 57063335 + 0.5 NA intron (NM_001322164, intron 3 of 19) intron (NM_001322164, intron 3 of 19) 143630 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 161-63 chr4 73450568 73450940 + 0.5 NA intron (NM_001354717, intron 11 of 14) intron (NM_001354717, intron 11 of 14) 14533 NM_001354717 174 Hs.518808 NM_001134 ENSG00000081051 AFP AFPD|FETA|HPAFP alpha fetoprotein protein-coding 154-61 chr2 212311930 212312370 + 0.5 NA intron (NM_001042599, intron 1 of 26) HAL1ME|LINE|L1 114210 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 167.5-16 chr11 40217399 40217781 + 0.5 NA intron (NM_020929, intron 3 of 4) MIRb|SINE|MIR 75540 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 159.75-93 chr8 123003501 123004114 + 0.5 NA Intergenic AluSz|SINE|Alu 21965 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 213-24 chr4 156849845 156850609 + 0.5 NA non-coding (NR_036641, exon 3 of 7) non-coding (NR_036641, exon 3 of 7) 121572 NM_016205 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 147-78 chr4 61700827 61701275 + 0.5 NA intron (NM_001371342, intron 4 of 20) intron (NM_001371342, intron 4 of 20) 460714 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 185.5-57 chr5 20351316 20351796 + 0.5 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 46005 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 151.25-37 chr2 45735238 45735611 + 0.5 NA intron (NM_005400, intron 1 of 14) MIRb|SINE|MIR 83749 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 185.5-76 chr9 31193275 31194004 + 0.5 NA Intergenic LTR45C|LTR|ERV1 187851 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 146.25-38 chr18 11438175 11438613 + 0.5 NA Intergenic L1MA4A|LINE|L1 -16084 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 159.25-33 chr2 25876784 25877357 + 0.5 NA intron (NM_018263, intron 1 of 11) L1ME4a|LINE|L1 1417 NM_018263 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 153-10 chr10 66821903 66822364 + 0.5 NA intron (NM_001127384, intron 7 of 17) (ATAATAT)n|Simple_repeat|Simple_repeat -103903 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 161.5-63 chr3 43763562 43763912 + 0.5 NA Intergenic L1ME3A|LINE|L1 -72143 NM_001346469 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 158-82 chr6 164929844 164930263 + 0.5 NA Intergenic MIRb|SINE|MIR -107990 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 188.5-70 chr8 104295326 104295959 + 0.5 NA Intergenic Intergenic -44154 NM_001257317 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 159.75-23 chr11 133156540 133157081 + 0.5 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) -213042 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 163.25-40 chr2 61240288 61240847 + 0.5 NA intron (NM_014709, intron 53 of 79) AluY|SINE|Alu 63149 NR_152212 130872 Hs.655602 NM_152392 ENSG00000173209 AHSA2P AHA1|AHSA2|Hch1 activator of HSP90 ATPase homolog 2, pseudogene pseudo 161-73 chr6 54662089 54662608 + 0.5 NA Intergenic L1MA7|LINE|L1 -184423 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 170.75-20 chr14 58988798 58989317 + 0.5 NA intron (NR_110547, intron 4 of 5) intron (NR_110547, intron 4 of 5) 160769 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 254.25-4 chr12 22201951 22202618 + 0.5 NA intron (NM_003034, intron 4 of 4) intron (NM_003034, intron 4 of 4) 132430 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 167.75-66 chr4 99790277 99790684 + 0.5 NA Intergenic L2c|LINE|L2 -26347 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 194.75-36 chr4 116487394 116487984 + 0.5 NA Intergenic L1MA3|LINE|L1 187964 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 165.75-19 chr10 94807988 94808489 + 0.5 NA intron (NM_000769, intron 5 of 8) L1MA5|LINE|L1 45557 NM_000769 1557 Hs.282409 NM_000769 ENSG00000165841 CYP2C19 CPCJ|CYP2C|CYPIIC17|CYPIIC19|P450C2C|P450IIC19 cytochrome P450 family 2 subfamily C member 19 protein-coding 149-20 chr14 20553846 20554265 + 0.5 NA Intergenic AluSx|SINE|Alu 6876 NM_001110359 390443 Hs.533972 NM_001001673 ENSG00000188655 RNASE9 HEL128|RAK1|h461 ribonuclease A family member 9 (inactive) protein-coding 145.75-63 chr20 16072230 16072618 + 0.5 NA Intergenic Intergenic -86542 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 219.25-17 chr16 79680259 79680971 + 0.5 NA Intergenic L1ME2z|LINE|L1 -79878 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 149.75-68 chr4 168170336 168170675 + 0.5 NA intron (NM_007193, intron 6 of 11) intron (NM_007193, intron 6 of 11) 77968 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 251.5-10 chr14 57128088 57128905 + 0.5 NA Intergenic AluSx3|SINE|Alu 140409 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 148.5-5 chr1 150137276 150137749 + 0.5 NA intron (NR_103998, intron 13 of 13) L2a|LINE|L2 -11922 NM_001304722 51177 Hs.438824 NM_016274 ENSG00000023902 PLEKHO1 CKIP-1|CKIP1|JBP|OC120 pleckstrin homology domain containing O1 protein-coding 190-55 chr5 128626660 128627398 + 0.5 NA Intergenic Intergenic -88784 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 148.5-7 chr1 156512392 156512800 + 0.5 NA Intergenic L3|LINE|CR1 -11821 NM_005920 4209 Hs.314327 NM_005920 ENSG00000116604 MEF2D - myocyte enhancer factor 2D protein-coding 191.75-9 chr10 90977621 90978218 + 0.5 NA intron (NR_131214, intron 3 of 5) intron (NR_131214, intron 3 of 5) 30619 NR_131214 105378427 NR_131214 XLOC_008559 - uncharacterized LOC105378427 ncRNA 189.75-65 chr6 102058606 102059102 + 0.5 NA intron (NM_021956, intron 15 of 15) intron (NM_021956, intron 15 of 15) 659869 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 199.75-51 chr7 16310674 16311196 + 0.5 NA intron (NM_001101417, intron 2 of 8) HAL1|LINE|L1 100449 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 160-90 chr9 11094177 11094613 + 0.5 NA Intergenic Intergenic 481189 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 208-25 chr4 109095100 109095570 + 0.5 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 207323 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 238.25-20 chr20 55795743 55796418 + 0.5 NA Intergenic LTR7B|LTR|ERV1 209439 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 168-28 chr19 34413700 34414136 + 0.5 NA intron (NM_032346, intron 5 of 6) intron (NM_032346, intron 5 of 6) 9519 NM_032346 84306 Hs.515344 NM_032346 ENSG00000126249 PDCD2L - programmed cell death 2 like protein-coding 149.5-78 chr6 36098227 36098664 + 0.5 NA intron (NM_139014, intron 9 of 10) AluJo|SINE|Alu -32068 NR_072996 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 151.25-80 chr6 62509367 62509848 + 0.5 NA Intergenic Intergenic -223380 NM_001350622 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 151.75-87 chr6 11567896 11568430 + 0.5 NA intron (NM_001100829, intron 2 of 2) GA-rich|Low_complexity|Low_complexity 30414 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 182.75-29 chr17 1874529 1875170 + 0.5 NA intron (NM_001355120, intron 6 of 16) intron (NM_001355120, intron 6 of 16) 44844 NM_001355121 6117 Hs.461925 NM_002945 ENSG00000132383 RPA1 HSSB|MST075|REPA1|RF-A|RP-A|RPA70 replication protein A1 protein-coding 186.5-25 chr2 55508691 55509427 + 0.5 NA Intergenic Intergenic -10536 NM_001282761 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 167-64 chr4 149235984 149236409 + 0.5 NA intron (NR_125887, intron 9 of 12) L1ME2|LINE|L1 81901 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 166.25-4 chr1 182729677 182730130 + 0.5 NA Intergenic Intergenic 17041 NR_146548 105371644 Hs.496952 NR_146548 ENSG00000227181 LINC01688 - long intergenic non-protein coding RNA 1688 ncRNA 165-70 chr5 144045670 144046118 + 0.5 NA Intergenic LTR17|LTR|ERV1 124765 NM_030799 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 200.5-17 chr12 123178498 123179097 + 0.5 NA intron (NR_103517, intron 15 of 23) AluSx|SINE|Alu 54344 NR_103517 10198 Hs.577404 NM_022782 ENSG00000051825 MPHOSPH9 MPP-9|MPP9 M-phase phosphoprotein 9 protein-coding 187-56 chr7 52663095 52663611 + 0.5 NA Intergenic Intergenic -372280 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 188.75-64 chr8 100272070 100272753 + 0.5 NA intron (NM_001353837, intron 3 of 9) intron (NM_001353837, intron 3 of 9) 29782 NM_001353837 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 180.75-74 chr8 134652762 134653355 + 0.5 NA intron (NM_020863, intron 2 of 15) L1M5|LINE|L1 43497 NM_001029939 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 168.25-28 chr18 11297364 11297964 + 0.5 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -148902 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 243.5-4 chr10 115412892 115413731 + 0.5 NA intron (NM_207303, intron 20 of 28) intron (NM_207303, intron 20 of 28) 319946 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 153.25-43 chr15 90769965 90770291 + 0.5 NA intron (NM_001287246, intron 13 of 22) intron (NM_001287246, intron 13 of 22) 52782 NM_001287248 641 Hs.725208 NM_000057 ENSG00000197299 BLM BS|MGRISCE1|RECQ2|RECQL2|RECQL3 BLM RecQ like helicase protein-coding 188.5-42 chr3 164317152 164317825 + 0.5 NA Intergenic Intergenic -145932 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 198.75-27 chr17 48282296 48282776 + 0.5 NA intron (NM_001075099, intron 4 of 12) AluJo|SINE|Alu -11811 NR_131240 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 171-22 chr14 66958693 66959173 + 0.5 NA intron (NM_020806, intron 8 of 22) L1MB5|LINE|L1 -230507 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 162.5-59 chr3 102868088 102868645 + 0.5 NA Intergenic Intergenic 433351 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 152.25-24 chr14 39212687 39213160 + 0.5 NA Intergenic L4_A_Mam|LINE|RTE-X -20992 NM_001329214 4253 Hs.287694 NM_005930 ENSG00000150527 MIA2 CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI MIA SH3 domain ER export factor 2 protein-coding 196-25 chr2 158003895 158004553 + 0.5 NA intron (NM_001135098, intron 1 of 8) intron (NM_001135098, intron 1 of 8) 9045 NM_001135098 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 150.75-12 chr11 18496367 18496806 + 0.5 NA intron (NM_006292, intron 7 of 9) AluJb|SINE|Alu 30356 NM_006292 7251 Hs.523512 NM_006292 ENSG00000074319 TSG101 TSG10|VPS23 tumor susceptibility 101 protein-coding 164.5-70 chr5 89838058 89838493 + 0.5 NA Intergenic Intergenic 178445 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 146.5-40 chr17 64523232 64523709 + 0.5 NA intron (NM_138363, intron 8 of 19) L1ME4a|LINE|L1 16493 NR_133644 90799 Hs.569713 NM_138363 ENSG00000258890 CEP95 CCDC45 centrosomal protein 95 protein-coding 187.5-6 chr10 66876033 66876733 + 0.5 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -49653 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 162.75-2 chr1 163700216 163700755 + 0.5 NA Intergenic Intergenic -277294 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 218.75-6 chr12 14195311 14195853 + 0.5 NA Intergenic AluSz|SINE|Alu -170050 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 152.5-29 chr14 75435926 75436444 + 0.5 NA intron (NM_001135049, intron 1 of 3) intron (NM_001135049, intron 1 of 3) 4051 NM_001135049 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 150.75-98 chr8 90930584 90931134 + 0.5 NA intron (NM_022351, intron 8 of 12) intron (NM_022351, intron 8 of 12) 54218 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 172.25-48 chr4 32298121 32298617 + 0.5 NA Intergenic L1ME2|LINE|L1 -52669 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 214-23 chr3 36677876 36678522 + 0.5 NA Intergenic L1M4|LINE|L1 61662 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 160-34 chr19 28658262 28658706 + 0.5 NA intron (NR_110759, intron 5 of 9) L1PA15-16|LINE|L1 51796 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 155.75-14 chr10 68146470 68146923 + 0.5 NA intron (NR_045663, intron 4 of 17) intron (NR_045663, intron 4 of 17) 37208 NR_045663 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|NEM11|RCM4 myopalladin protein-coding 174-41 chr3 165853362 165854003 + 0.5 NA Intergenic L3|LINE|CR1 -16259 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 150-10 chr10 27769512 27769939 + 0.5 NA Intergenic Intergenic -23906 NM_001242702 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 147.25-34 chr14 85377066 85377497 + 0.5 NA Intergenic Intergenic -9994 NR_135155 105370605 NR_135155 ENSG00000258814 LINC02329 - long intergenic non-protein coding RNA 2329 ncRNA 156.25-107 chr9 110131210 110131580 + 0.5 NA intron (NM_001136562, intron 1 of 3) intron (NM_001136562, intron 1 of 3) 5894 NM_001136562 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 194.5-12 chr11 29754199 29754742 + 0.5 NA Intergenic Intergenic 135668 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 163.75-6 chr1 190953147 190953694 + 0.5 NA Intergenic L1MCa|LINE|L1 275078 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 185.5-67 chr7 79209057 79209607 + 0.5 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 200344 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 157-105 chr9 102494233 102494587 + 0.5 NA Intergenic Intergenic -25227 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 209-42 chr7 25897698 25898250 + 0.5 NA Intergenic Intergenic 52012 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 156.25-57 chr3 144809612 144810118 + 0.5 NA Intergenic Intergenic 836784 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 173.5-81 chr7 41456785 41457417 + 0.5 NA Intergenic L1MC4a|LINE|L1 -236818 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 147.75-44 chr17 32625252 32625730 + 0.5 NA intron (NM_015194, intron 20 of 21) MIRb|SINE|MIR 138498 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 237-20 chr9 29167287 29167856 + 0.5 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 44728 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 179.5-84 chr9 34358055 34358501 + 0.5 NA Intergenic L1MA7|LINE|L1 18620 NM_020702 57462 Hs.522083 NM_020702 ENSG00000164976 MYORG IBGC7|KIAA1161|NET37 myogenesis regulating glycosidase (putative) protein-coding 182-12 chr12 9882781 9883354 + 0.5 NA intron (NM_001190765, intron 1 of 5) intron (NM_001190765, intron 1 of 5) 1578 NM_001190765 100431172 Hs.725113 NM_001190765 ENSG00000256797 KLRF2 NKp65 killer cell lectin like receptor F2 protein-coding 177.25-14 chr12 18194760 18195457 + 0.5 NA Intergenic L1MC4|LINE|L1 -66432 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 156-77 chr5 106812849 106813185 + 0.5 NA Intergenic L1PA5|LINE|L1 197997 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 155.25-61 chr4 30604533 30605021 + 0.5 NA Intergenic Intergenic -115592 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 166-3 chr1 104496747 104497367 + 0.5 NA Intergenic Intergenic 424034 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 175.75-49 chr4 27388980 27389531 + 0.5 NA Intergenic Charlie8|DNA|hAT-Charlie 171776 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 159.5-10 chr10 52070977 52071309 + 0.5 NA intron (NM_001098512, intron 7 of 17) L1PA17|LINE|L1 242985 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 223-18 chr4 133190883 133191437 + 0.5 NA 3' UTR (NM_032961, exon 5 of 5) 3' UTR (NM_032961, exon 5 of 5) 41866 NM_020815 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 146.75-25 chr14 19926946 19927381 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL 6556 NM_001005483 79317 Hs.554585 NM_001005483 ENSG00000176281 OR4K5 OR14-16 olfactory receptor family 4 subfamily K member 5 protein-coding 145.75-83 chr3 187396434 187396894 + 0.5 NA Intergenic MLT1G1|LTR|ERVL-MaLR 28279 NM_022147 64108 Hs.43388 NM_022147 ENSG00000136514 RTP4 IFRG28|Z3CXXC4 receptor transporter protein 4 protein-coding 166.5-35 chr18 72672335 72672998 + 0.5 NA Intergenic Intergenic -128324 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 192-25 chr18 67592258 67592861 + 0.5 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) -75839 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4|DE-epi2 dermatan sulfate epimerase like protein-coding 168.75-21 chr14 26703333 26703738 + 0.5 NA intron (NR_147061, intron 2 of 6) L1MC5a|LINE|L1 104888 NR_147061 102725045 Hs.143441 NR_147061 LINC02588 C14orf22|NOVA1-AS1 long intergenic non-protein coding RNA 2588 ncRNA 153.75-18 chr14 83805329 83805833 + 0.5 NA Intergenic Intergenic 1162949 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 196.25-52 chr7 111806706 111807199 + 0.5 NA intron (NM_001363540, intron 30 of 52) intron (NM_001363540, intron 30 of 52) -1553 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 154-59 chr2 205984694 205985002 + 0.5 NA Intergenic Intergenic 101326 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 204-30 chr4 19923459 19924170 + 0.5 NA Intergenic MER65-int|LTR|ERV1 -328091 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 201.75-35 chr6 38392663 38393145 + 0.5 NA intron (NM_052893, intron 7 of 11) AluSx|SINE|Alu -88692 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 191-13 chr11 106070289 106070882 + 0.5 NA intron (NM_152433, intron 1 of 2) L1MD1|LINE|L1 6762 NM_198439 143879 Hs.101949 NM_152433 ENSG00000182359 KBTBD3 BKLHD3 kelch repeat and BTB domain containing 3 protein-coding 155.25-36 chr19 15540561 15541162 + 0.5 NA intron (NM_173483, intron 8 of 13) AluJo|SINE|Alu 32336 NM_173483 126410 Hs.156452 NM_173483 ENSG00000171954 CYP4F22 ARCI5|INLNE|LI3 cytochrome P450 family 4 subfamily F member 22 protein-coding 149.25-121 chr9 84313989 84314468 + 0.5 NA intron (NM_022127, intron 2 of 18) intron (NM_022127, intron 2 of 18) 26530 NR_037638 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 155.25-2 chr1 88353106 88353652 + 0.5 NA Intergenic Intergenic -330765 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 150.5-69 chr2 222382670 222383133 + 0.5 NA Intergenic Intergenic -41087 NM_001320834 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 178-46 chr3 184698559 184699178 + 0.5 NA Intergenic Intergenic 13196 NM_022149 64110 Hs.306123 NM_022149 ENSG00000177383 MAGEF1 MAGE-F1 MAGE family member F1 protein-coding 261.5-11 chr2 43899396 43900101 + 0.5 NA intron (NM_133259, intron 32 of 37) intron (NM_133259, intron 32 of 37) 60777 NM_022437 64241 Hs.413931 NM_022437 ENSG00000143921 ABCG8 GBD4|STSL ATP binding cassette subfamily G member 8 protein-coding 243.75-4 chr12 46313313 46314113 + 0.5 NA Intergenic L1MB3|LINE|L1 -44670 NM_030674 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 173.75-30 chr18 73622783 73623312 + 0.5 NA Intergenic Intergenic 298106 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 164.75-69 chr5 37210616 37211112 + 0.5 NA intron (NM_023073, intron 16 of 51) intron (NM_023073, intron 16 of 51) -38182 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 175.5-9 chr10 82364191 82364870 + 0.5 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -131610 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 163.5-41 chr16 61811474 61811986 + 0.5 NA intron (NM_001796, intron 7 of 11) L1MB1|LINE|L1 224708 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 190-14 chr14 72471171 72471914 + 0.5 NA intron (NM_001370288, intron 8 of 16) intron (NM_001370288, intron 8 of 16) -45278 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 253.25-13 chr21 27146218 27146912 + 0.5 NA Intergenic Intergenic -179477 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 155-68 chr4 16862705 16863190 + 0.5 NA intron (NM_001304435, intron 1 of 7) (AGGAAG)n|Simple_repeat|Simple_repeat 35698 NM_001290 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 187.75-61 chr6 21037537 21037959 + 0.5 NA intron (NM_017774, intron 11 of 15) intron (NM_017774, intron 11 of 15) 474144 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 182.5-62 chr5 127610179 127610660 + 0.5 NA Intergenic L1MC4a|LINE|L1 -38602 NM_001048252 613212 Hs.66194 NM_001048252 ENSG00000205279 CTXN3 KABE cortexin 3 protein-coding 203.25-43 chr7 106428250 106428938 + 0.5 NA Intergenic Intergenic -143611 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 176-48 chr4 71309146 71309624 + 0.5 NA intron (NM_001098484, intron 3 of 25) L1PA8|LINE|L1 -29668 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 153-96 chr9 29196527 29197046 + 0.5 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 15513 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 150.25-9 chr1 217720300 217720844 + 0.5 NA intron (NM_138796, intron 5 of 10) 7SLRNA|srpRNA|srpRNA 64548 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 152.75-38 chr17 59090977 59091547 + 0.5 NA intron (NM_001320990, intron 3 of 23) intron (NM_001320990, intron 3 of 23) 15618 NM_001353085 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 302.25-9 chr3 152094471 152095324 + 0.5 NA Intergenic L1MEc|LINE|L1 110532 NR_136178 101928166 NR_136178 LOC101928166 - uncharacterized LOC101928166 ncRNA 149.25-50 chr2 174587340 174587762 + 0.5 NA intron (NM_001077269, intron 1 of 7) intron (NM_001077269, intron 1 of 7) -29479 NR_004394 26827 NR_004394 ENSG00000206625 RNU6-1 RNU6|RNU6A|U6|U6-1 RNA, U6 small nuclear 1 snRNA 196.75-23 chr2 49486834 49487554 + 0.5 NA Intergenic Intergenic -332667 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 146.25-61 chr3 97488218 97488662 + 0.5 NA intron (NM_001080448, intron 10 of 17) intron (NM_001080448, intron 10 of 17) 48833 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 231.5-31 chr7 27428284 27428789 + 0.5 NA Intergenic AluSx1|SINE|Alu -181307 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 191.25-17 chr11 80300471 80300984 + 0.5 NA Intergenic Intergenic 462076 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 147-32 chr17 63555449 63555842 + 0.5 NA intron (NR_073585, intron 1 of 7) intron (NR_073585, intron 1 of 7) 5168 NM_005828 10238 Hs.410596 NM_005828 ENSG00000136485 DCAF7 AN11|HAN11|SWAN-1|WDR68 DDB1 and CUL4 associated factor 7 protein-coding 169.5-77 chr5 121380472 121380992 + 0.5 NA Intergenic Intergenic 58182 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 149.25-120 chr9 80873977 80874365 + 0.5 NA Intergenic Intergenic 815364 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 152.5-46 chr18 61437035 61437543 + 0.5 NA intron (NM_031891, intron 1 of 11) intron (NM_031891, intron 1 of 11) 103859 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 171.75-72 chr6 148817712 148818319 + 0.5 NA intron (NM_005715, intron 1 of 7) MER58B|DNA|hAT-Charlie 70985 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 201.25-9 chr13 27602610 27603102 + 0.5 NA intron (NM_153371, intron 1 of 9) L1ME2z|LINE|L1 17673 NM_153371 222484 Hs.132359 NM_153371 ENSG00000139517 LNX2 PDZRN1 ligand of numb-protein X 2 protein-coding 166-37 chr2 54702712 54703177 + 0.5 NA Intergenic L1MA3|LINE|L1 -22068 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 163.25-73 chr7 99961609 99961981 + 0.5 NA Intergenic SATR1|Satellite|Satellite 14236 NM_001185 563 Hs.546239 NM_001185 ENSG00000160862 AZGP1 ZA2G|ZAG alpha-2-glycoprotein 1, zinc-binding protein-coding 254.5-19 chr2 156097236 156097806 + 0.5 NA intron (NR_110250, intron 1 of 3) MER117|DNA|hAT-Charlie 157410 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 157.25-13 chr11 58671649 58671978 + 0.5 NA Intergenic AluSx1|SINE|Alu 49148 NM_000614 1270 Hs.524920 NM_000614 ENSG00000242689 CNTF HCNTF ciliary neurotrophic factor protein-coding 167.25-66 chr5 145674949 145675473 + 0.5 NA Intergenic L1MC5|LINE|L1 160131 NM_138492 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 146-56 chr3 125186405 125186911 + 0.5 NA intron (NM_001195483, intron 3 of 12) intron (NM_001195483, intron 3 of 12) 24741 NM_001195483 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 199.75-7 chr10 27080127 27080622 + 0.5 NA intron (NM_014915, intron 6 of 33) intron (NM_014915, intron 6 of 33) 20124 NM_001256053 22852 Hs.361041 NM_014915 ENSG00000107890 ANKRD26 THC2|bA145E8.1 ankyrin repeat domain 26 protein-coding 156-34 chr18 44764191 44764649 + 0.5 NA intron (NM_001130110, intron 2 of 3) L2a|LINE|L2 83532 NM_015559 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding 211-28 chr4 31989208 31989761 + 0.5 NA Intergenic MER50|LTR|ERV1 -7895 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 239.75-10 chr13 45424509 45425187 + 0.5 NA Intergenic (TATAAATATA)n|Simple_repeat|Simple_repeat -6393 NM_001286806 253512 Hs.591230 NM_001010875 ENSG00000174032 SLC25A30 KMCP1 solute carrier family 25 member 30 protein-coding 150.5-17 chr10 18062512 18063103 + 0.5 NA Intergenic L1MB4|LINE|L1 -52245 NR_038419 100129213 Hs.568816 NR_038419 ENSG00000226083 SLC39A12-AS1 - SLC39A12 antisense RNA 1 ncRNA 236-13 chr16 11890163 11890777 + 0.5 NA intron (NM_002094, intron 6 of 14) intron (NM_002094, intron 6 of 14) 25486 NM_002094 2935 Hs.528780 NM_002094 ENSG00000103342 GSPT1 551G9.2|ETF3A|GST1|eRF3a G1 to S phase transition 1 protein-coding 181.25-63 chr9 26708518 26709103 + 0.5 NA Intergenic Intergenic 183992 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 147.75-82 chr4 178707577 178708144 + 0.5 NA Intergenic Intergenic -799924 NR_108093 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 166.25-23 chr13 60795219 60795737 + 0.5 NA Intergenic Intergenic 122523 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 215-27 chr5 24877320 24878173 + 0.5 NA Intergenic L1M5|LINE|L1 -37163 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 164.5-32 chr2 66562254 66562715 + 0.5 NA intron (NM_002398, intron 9 of 12) intron (NM_002398, intron 9 of 12) -11546 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 199.75-10 chr11 41197989 41198722 + 0.5 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 261281 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 147.5-108 chr8 130281279 130281743 + 0.5 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 15022 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 184 chr1 61037839 61038380 + 0.5 NA Intergenic L1ME3B|LINE|L1 -39118 NM_001145511 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA BRMUTD|CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 159.75-45 chr2 23756005 23756494 + 0.5 NA intron (NR_125717, intron 26 of 28) intron (NR_125717, intron 26 of 28) 170874 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 160.5-104 chr7 15790740 15791286 + 0.5 NA Intergenic AluY|SINE|Alu 102635 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 172.25-59 chr5 89820305 89820803 + 0.5 NA Intergenic Intergenic 196166 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 210-13 chr14 87144138 87144680 + 0.5 NA Intergenic Charlie1a|DNA|hAT-Charlie 238631 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 215.5-8 chr11 13015534 13016239 + 0.5 NA Intergenic Intergenic 6570 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 256.25-2 chr10 13571535 13572310 + 0.5 NA Intergenic AluJb|SINE|Alu -15043 NM_003675 8559 Hs.660649 NM_003675 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 148.75-59 chr22 21802280 21802652 + 0.5 NA intron (NM_002745, intron 3 of 8) intron (NM_002745, intron 3 of 8) 65214 NM_002745 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 153-68 chr4 95066519 95067054 + 0.5 NA intron (NM_001256793, intron 1 of 10) MER5A|DNA|hAT-Charlie 15109 NM_001256793 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 204.75-51 chr6 166082475 166083069 + 0.5 NA Intergenic L1M2|LINE|L1 -14948 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 149.25-21 chr12 121227068 121227548 + 0.5 NA intron (NR_046373, intron 4 of 10) intron (NR_046373, intron 4 of 10) 17179 NM_001256796 5025 Hs.321709 NM_002560 ENSG00000135124 P2RX4 P2X4|P2X4R purinergic receptor P2X 4 protein-coding 147.5-28 chr14 84095032 84095483 + 0.5 NA Intergenic Intergenic -1176675 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 159.5-12 chr10 59067852 59068445 + 0.5 NA Intergenic Intergenic 68630 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 153.25-69 chr2 222912516 222913010 + 0.5 NA intron (NM_004457, intron 4 of 16) intron (NM_004457, intron 4 of 16) 51727 NM_001354159 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 162.5-92 chr9 77285251 77285743 + 0.5 NA intron (NM_001018038, intron 31 of 68) intron (NM_001018038, intron 31 of 68) -107580 NR_026668 100286938 Hs.662256 NR_026668 ENSG00000232998 VPS13A-AS1 - VPS13A antisense RNA 1 ncRNA 183-35 chr4 42648912 42649464 + 0.5 NA intron (NM_001105529, intron 1 of 35) intron (NM_001105529, intron 1 of 35) 7917 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 174.5-61 chr4 114370862 114371378 + 0.5 NA Intergenic Intergenic -227282 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 181.75-59 chr6 140826837 140827468 + 0.5 NA Intergenic Intergenic 143338 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 155.25-72 chr5 37057213 37057777 + 0.5 NA intron (NM_015384, intron 43 of 45) intron (NM_015384, intron 43 of 45) 180726 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 173.5-61 chr4 98077875 98078336 + 0.5 NA intron (NM_174952, intron 5 of 10) intron (NM_174952, intron 5 of 10) 65371 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 231.25 chr1 8109529 8110235 + 0.5 NA Intergenic AluSx|SINE|Alu -83573 NM_018948 54206 Hs.605445 NM_018948 ENSG00000116285 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 190.5-43 chr4 60527092 60527719 + 0.5 NA Intergenic Intergenic -395214 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 157-9 chr10 19518458 19518922 + 0.5 NA intron (NM_001142308, intron 31 of 39) intron (NM_001142308, intron 31 of 39) 209860 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 147.75-102 chr7 42707313 42707760 + 0.5 NA Intergenic L1ME3F|LINE|L1 -1089 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 168.25-6 chr10 30868499 30869021 + 0.5 NA intron (NM_001143771, intron 5 of 7) intron (NM_001143771, intron 5 of 7) 130757 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 195-45 chr8 90687400 90687908 + 0.5 NA Intergenic MER51B|LTR|ERV1 -41571 NM_001008495 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 152-69 chr4 178584867 178585427 + 0.5 NA Intergenic (TTTGT)n|Simple_repeat|Simple_repeat -677211 NR_108093 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 168.25-37 chr2 123789248 123789729 + 0.5 NA Intergenic Intergenic 235686 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 158-65 chr5 38225193 38225587 + 0.5 NA Intergenic Intergenic -33169 NM_152403 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 182.5-46 chr4 48397394 48397934 + 0.5 NA intron (NM_020846, intron 6 of 7) L1PA10|LINE|L1 56135 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 216.75-14 chr2 24760553 24761178 + 0.5 NA intron (NM_001362950, intron 21 of 23) AluSx|SINE|Alu -32250 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 181.5-40 chr2 183407340 183407888 + 0.5 NA Intergenic Intergenic 283171 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 168.75-20 chr13 90711883 90712440 + 0.5 NA Intergenic Intergenic 214436 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 190.5-54 chr5 129113805 129114222 + 0.5 NA TTS (NM_016048) TTS (NM_016048) 16325 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 213.5-23 chr2 80448004 80448598 + 0.5 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 134922 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 165.25-49 chr5 7312031 7312644 + 0.5 NA Intergenic Intergenic -5623 NR_033906 442132 Hs.727388 NM_001034846 LOC442132 - golgin A6 family-like 1 pseudogene pseudo 191-43 chr5 96756301 96756791 + 0.5 NA intron (NM_001042446, intron 17 of 26) Tigger4a|DNA|TcMar-Tigger 12944 NR_104285 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 169-60 chr6 142406143 142406772 + 0.5 NA intron (NM_198569, intron 15 of 24) intron (NM_198569, intron 15 of 24) 104450 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 231.5-41 chrX 85166202 85166803 + 0.5 NA intron (NM_001367858, intron 2 of 11) L1MA1|LINE|L1 -44204 NR_110651 101928128 Hs.636014 NR_110651 LOC101928128 - uncharacterized LOC101928128 ncRNA 197.25-27 chr2 103787160 103787728 + 0.5 NA Intergenic L3|LINE|CR1 620888 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 166-9 chr10 87958088 87958624 + 0.5 NA intron (NM_001304717, intron 8 of 9) intron (NM_001304717, intron 8 of 9) 94731 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 231.5-36 chr8 54329085 54329651 + 0.5 NA Intergenic L1MB3|LINE|L1 -1318 NR_004385 26766 NR_004385 ENSG00000199212 RNU105C E1-5|E1-6 RNA, U105C small nucleolar snoRNA 220-14 chr3 49410427 49410951 + 0.5 NA intron (NM_001313941, intron 1 of 5) intron (NM_001313941, intron 1 of 5) 1287 NM_001313947 387 Hs.247077 NM_001664 ENSG00000067560 RHOA ARH12|ARHA|RHO12|RHOH12 ras homolog family member A protein-coding 153.75-58 chr4 71303399 71303942 + 0.5 NA intron (NM_001098484, intron 3 of 25) intron (NM_001098484, intron 3 of 25) -35383 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 153.75-45 chr3 98414119 98414702 + 0.5 NA Intergenic L1PA11|LINE|L1 23744 NM_001005516 403277 Hs.554709 NM_001005516 ENSG00000206536 OR5K3 - olfactory receptor family 5 subfamily K member 3 protein-coding 160.25-36 chr2 162952898 162953422 + 0.5 NA Intergenic Intergenic -114393 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 252.75-30 chr9 33340784 33341675 + 0.5 NA intron (NM_002504, intron 12 of 23) THE1B|LTR|ERVL-MaLR 50713 NM_002504 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 195-31 chr3 68108683 68109148 + 0.5 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 104668 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 161.5-93 chr9 34414010 34414560 + 0.5 NA intron (NM_001184942, intron 1 of 5) intron (NM_001184942, intron 1 of 5) -16475 NM_032596 84688 Hs.50334 NM_032596 ENSG00000164972 C9orf24 CBE1|NYD-SP22|SMRP1|bA573M23.4 chromosome 9 open reading frame 24 protein-coding 171.75-5 chr1 151452858 151453414 + 0.5 NA intron (NM_001194938, intron 1 of 17) AluSg|SINE|Alu 6358 NM_015100 23126 Hs.489873 NM_015100 ENSG00000143442 POGZ MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m pogo transposable element derived with ZNF domain protein-coding 165.75-79 chr5 67714760 67715276 + 0.5 NA Intergenic L1MB4|LINE|L1 -68229 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 168-18 chr12 59996840 59997434 + 0.5 NA Intergenic Intergenic 307767 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 212.75-22 chr4 42712528 42713166 + 0.5 NA Intergenic LTR79|LTR|ERVL -55742 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 150.5-115 chr8 66262023 66262501 + 0.5 NA Intergenic L1MA8|LINE|L1 70148 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 165.5-84 chr6 149674729 149675212 + 0.5 NA intron (NM_001350339, intron 8 of 9) intron (NM_001350339, intron 8 of 9) -26166 NM_001204076 11104 Hs.450175 NM_007044 ENSG00000186625 KATNA1 - katanin catalytic subunit A1 protein-coding 166.25-29 chr16 55623738 55624324 + 0.5 NA Intergenic Intergenic -32033 NM_001172501 6530 Hs.78036 NM_001043 ENSG00000103546 SLC6A2 NAT1|NET|NET1|SLC6A5 solute carrier family 6 member 2 protein-coding 149.75-13 chr10 80048792 80049325 + 0.5 NA non-coding (NR_027428, exon 6 of 6) non-coding (NR_027428, exon 6 of 6) -29588 NM_001270371 80195 Hs.169982 NM_025125 ENSG00000133678 TMEM254 C10orf57|bA369J21.6 transmembrane protein 254 protein-coding 247.25-6 chr11 104523620 104524268 + 0.5 NA Intergenic Intergenic 85358 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 161.25-63 chr6 105025495 105025882 + 0.5 NA intron (NM_001004317, intron 2 of 3) FLAM_C|SINE|Alu 68581 NM_001004317 389421 Hs.23616 NM_001004317 ENSG00000187772 LIN28B CSDD2 lin-28 homolog B protein-coding 151-85 chr6 153395190 153395641 + 0.5 NA Intergenic Intergenic -264133 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 156.5-63 chr3 16053427 16053874 + 0.5 NA Intergenic L2a|LINE|L2 -121030 NM_001319051 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 191.75-10 chr10 120094143 120094797 + 0.5 NA Intergenic Intergenic 135957 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 193-7 chr10 64330607 64331147 + 0.5 NA Intergenic Intergenic -494651 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 192-54 chr8 84126269 84126693 + 0.5 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 -56306 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 193.25-4 chr1 116391544 116392040 + 0.5 NA intron (NM_001160234, intron 10 of 22) intron (NM_001160234, intron 10 of 22) 8422 NM_001160234 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 177.75-64 chr5 150900965 150901407 + 0.5 NA 3' UTR (NM_001346557, exon 4 of 4) 3' UTR (NM_001346557, exon 4 of 4) 3797 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 213-4 chr10 63673278 63673967 + 0.5 NA Intergenic L1ME4a|LINE|L1 -151732 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 164.25-80 chr7 3524128 3524706 + 0.5 NA intron (NM_152744, intron 1 of 44) L2a|LINE|L2 223165 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 150-94 chr8 137745440 137745927 + 0.5 NA Intergenic L1MA3|LINE|L1 -332095 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 162-10 chr10 97546047 97546503 + 0.5 NA intron (NM_024954, intron 1 of 2) intron (NM_024954, intron 1 of 2) -26166 NM_001291218 26287 Hs.73708 NM_020349 ENSG00000165887 ANKRD2 ARPP ankyrin repeat domain 2 protein-coding 187-53 chr6 42933177 42933648 + 0.5 NA intron (NR_134881, intron 2 of 7) intron (NR_134881, intron 2 of 7) 3932 NR_134892 107080644 Hs.144914 NM_001318856 CNPY3-GNMT - CNPY3-GNMT readthrough protein-coding 180-3 chr1 91309728 91310254 + 0.5 NA intron (NM_001017975, intron 30 of 38) L1MC5|LINE|L1 94846 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 157-65 chr3 190716013 190716455 + 0.5 NA Intergenic Intergenic 146460 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 149.25-108 chr8 54400668 54401201 + 0.5 NA Intergenic Intergenic -57001 NM_022454 64321 Hs.98367 NM_022454 ENSG00000164736 SOX17 VUR3 SRY-box transcription factor 17 protein-coding 148-19 chr11 18056779 18057294 + 0.5 NA Intergenic MIR|SINE|MIR -16248 NM_004179 7166 Hs.591999 NM_004179 ENSG00000129167 TPH1 TPRH|TRPH tryptophan hydroxylase 1 protein-coding 198-26 chr4 53373988 53374522 + 0.5 NA Intergenic Intergenic -3386 NM_030917 81608 Hs.555109 NM_030917 ENSG00000145216 FIP1L1 FIP1|Rhe|hFip1 factor interacting with PAPOLA and CPSF1 protein-coding 159.25-58 chr4 70538733 70539349 + 0.5 NA Intergenic Arthur1B|DNA|hAT-Tip100 20472 NM_001286731 401138 Hs.453069 NM_212557 ENSG00000187689 AMTN AI3B|UNQ689 amelotin protein-coding 182.25 chr1 55751869 55752417 + 0.5 NA Intergenic L1MEd|LINE|L1 192820 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 157.5-66 chr4 69577959 69578414 + 0.5 NA Intergenic Intergenic -52172 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 153.25-68 chr2 187574276 187574710 + 0.5 NA Intergenic Intergenic -19988 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 151.75-14 chr11 22731370 22731750 + 0.5 NA intron (NM_005256, intron 3 of 6) intron (NM_005256, intron 3 of 6) 56786 NM_005256 2620 Hs.711297 NM_005256 ENSG00000148935 GAS2 GAS-2 growth arrest specific 2 protein-coding 173.25-67 chr7 40746889 40747455 + 0.5 NA intron (NM_024728, intron 13 of 14) intron (NM_024728, intron 13 of 14) 232767 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 275.75-9 chr3 35835922 35836765 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 91867 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 149.25-7 chr10 24478404 24478832 + 0.5 NA intron (NM_001282770, intron 2 of 11) intron (NM_001282770, intron 2 of 11) 12087 NM_001282770 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 211-14 chr15 95765535 95766119 + 0.5 NA Intergenic Intergenic 332734 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 186.75-84 chr9 100495361 100495814 + 0.5 NA intron (NM_003692, intron 1 of 9) intron (NM_003692, intron 1 of 9) 22438 NM_003692 8577 Hs.598100 NM_003692 ENSG00000241697 TMEFF1 C9orf2|CT120.1|H7365|TR-1 transmembrane protein with EGF like and two follistatin like domains 1 protein-coding 177-25 chr2 39910449 39910946 + 0.5 NA Intergenic Intergenic -6937 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 157.25-14 chr11 74596625 74597076 + 0.5 NA intron (NR_046409, intron 2 of 10) L1MA8|LINE|L1 4268 NM_001363597 10714 Hs.82502 NM_006591 ENSG00000077514 POLD3 P66|P68|PPP1R128 DNA polymerase delta 3, accessory subunit protein-coding 183.5-6 chr11 10293323 10293820 + 0.5 NA intron (NM_030962, intron 1 of 39) intron (NM_030962, intron 1 of 39) 636 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 161.5-64 chr3 176402838 176403294 + 0.5 NA Intergenic Intergenic -112037 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 147.25-7 chr1 102538317 102538714 + 0.5 NA Intergenic Intergenic -541281 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 149.5-28 chr15 27816732 27817221 + 0.5 NA intron (NM_001300984, intron 22 of 22) intron (NM_001300984, intron 22 of 22) 282339 NM_000275 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 156-74 chr5 25316682 25317298 + 0.5 NA Intergenic Intergenic 126037 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 147.75-26 chr11 87750280 87750753 + 0.5 NA Intergenic Intergenic -31105 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 158.25-41 chr15 82777271 82777743 + 0.5 NA intron (NM_001007122, intron 6 of 12) L1MB1|LINE|L1 21562 NR_003011 677778 Hs.743895 NR_003011 ENSG00000277864 SCARNA15 ACA45 small Cajal body-specific RNA 15 ncRNA 162.25-57 chr4 63556847 63557411 + 0.5 NA Intergenic Intergenic 852321 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 177.75-38 chr21 14836866 14837356 + 0.5 NA intron (NR_146322, intron 2 of 3) intron (NR_146322, intron 2 of 3) 81557 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 155-8 chr1 191744410 191744897 + 0.5 NA Intergenic A-rich|Low_complexity|Low_complexity -413809 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 162.75-12 chr10 98662928 98663388 + 0.5 NA intron (NM_021828, intron 6 of 11) intron (NM_021828, intron 6 of 11) -216195 NM_001322487 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 160-57 chr4 18542429 18542944 + 0.5 NA Intergenic Intergenic -520811 NM_001365659 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 196.25-51 chr7 37071322 37072050 + 0.5 NA intron (NM_001206480, intron 15 of 21) intron (NM_001206480, intron 15 of 21) 73890 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 182.75-9 chr10 61382453 61382972 + 0.5 NA Intergenic L1MEi|LINE|L1 -69927 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 155.25-16 chr11 55910675 55911039 + 0.5 NA Intergenic Intergenic 3725 NM_001001960 390148 Hs.554526 NM_001001960 ENSG00000187612 OR5W2 OR5W2P|OR5W3P olfactory receptor family 5 subfamily W member 2 protein-coding 162.5-74 chr6 85638428 85638903 + 0.5 NA intron (NM_001159676, intron 3 of 10) intron (NM_001159676, intron 3 of 10) 2786 NM_001159676 10492 Hs.571177 NM_006372 ENSG00000135316 SYNCRIP GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q synaptotagmin binding cytoplasmic RNA interacting protein protein-coding 163-15 chr11 25768489 25768873 + 0.5 NA Intergenic Intergenic -420442 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 227-5 chr17 33858031 33858749 + 0.5 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 298416 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 159.25-65 chr5 122254734 122255201 + 0.5 NA Intergenic L1PB3|LINE|L1 -56724 NR_131762 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 154-15 chr10 108673015 108673352 + 0.5 NA Intergenic AluSg|SINE|Alu -603890 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 167.25-56 chr4 137591505 137592053 + 0.5 NA intron (NR_146553, intron 1 of 1) intron (NR_146553, intron 1 of 1) 46048 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 168-35 chr2 49162671 49163042 + 0.5 NA Intergenic Intergenic -8329 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 231.25-35 chr7 44392442 44392991 + 0.5 NA intron (NM_015332, intron 4 of 5) intron (NM_015332, intron 4 of 5) -67085 NM_172079 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 183-53 chr8 56643038 56643640 + 0.5 NA Intergenic Intergenic -83516 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 158.5-39 chr19 39937705 39938216 + 0.5 NA Intergenic L1MD|LINE|L1 -3334 NM_003890 8857 Hs.111732 NM_003890 FCGBP FC(GAMMA)BP Fc fragment of IgG binding protein protein-coding 166.75-33 chr17 60148503 60149103 + 0.5 NA Intergenic Intergenic -1170 NR_137422 762 Hs.89485 NM_000717 ENSG00000167434 CA4 CAIV|Car4|RP17 carbonic anhydrase 4 protein-coding 230.75-33 chr5 41163452 41164096 + 0.5 NA intron (NM_000065, intron 9 of 17) intron (NM_000065, intron 9 of 17) 49758 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 157.25-51 chr2 124868446 124868963 + 0.5 NA intron (NM_130773, intron 20 of 23) intron (NM_130773, intron 20 of 23) 843417 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 232-21 chr4 161799472 161800080 + 0.5 NA intron (NM_001128428, intron 4 of 14) MIR|SINE|MIR -222957 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 175.25-70 chr8 83983511 83984065 + 0.5 NA Intergenic L1ME3A|LINE|L1 -198999 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 228.25-11 chr18 3205668 3206524 + 0.5 NA intron (NM_019856, intron 2 of 36) intron (NM_019856, intron 2 of 36) 13872 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 190-19 chr18 41888078 41888502 + 0.5 NA Intergenic Intergenic -66944 NM_001308020 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 236.75-4 chr10 20157494 20158096 + 0.5 NA intron (NM_032812, intron 6 of 13) intron (NM_032812, intron 6 of 13) 341363 NM_032812 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 183-24 chr2 26985683 26986230 + 0.5 NA intron (NR_149018, intron 5 of 5) MLT1C|LTR|ERVL-MaLR 15319 NM_012326 22924 Hs.515860 NM_012326 ENSG00000084764 MAPRE3 EB3|EBF3|EBF3-S|RP3 microtubule associated protein RP/EB family member 3 protein-coding 156.25-56 chr3 87377161 87377632 + 0.5 NA Intergenic Intergenic -100812 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 156.75-55 chr2 156917463 156917896 + 0.5 NA Intergenic L1ME1|LINE|L1 -340026 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 151.25-62 chr3 124177813 124178171 + 0.5 NA intron (NM_001024660, intron 1 of 59) MER5A|DNA|hAT-Charlie 45063 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 155.75-49 chr19 27980857 27981294 + 0.5 NA intron (NR_146734, intron 6 of 7) intron (NR_146734, intron 6 of 7) -187135 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 178.75-50 chr4 86098697 86099307 + 0.5 NA intron (NM_001318069, intron 8 of 13) intron (NM_001318069, intron 8 of 13) -20804 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 179.5-67 chr6 122125297 122125897 + 0.5 NA Intergenic AluJr|SINE|Alu -273954 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 168.25-8 chr10 120985370 120985971 + 0.5 NA Intergenic Intergenic 134308 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 191-28 chr2 40498630 40499056 + 0.5 NA intron (NM_001112802, intron 1 of 7) L3|LINE|CR1 13592 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 182.5-37 chr3 9540885 9541460 + 0.5 NA intron (NM_198560, intron 2 of 3) AluSx3|SINE|Alu 12650 NM_198560 375323 Hs.56782 NM_198560 ENSG00000156959 LHFPL4 GARLH4 LHFPL tetraspan subfamily member 4 protein-coding 176.5-58 chr4 36099574 36100239 + 0.5 NA intron (NR_146894, intron 27 of 32) intron (NR_146894, intron 27 of 32) 144033 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 150.25-24 chr12 23908426 23908999 + 0.5 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) 40958 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 159.5-26 chr15 85577266 85577705 + 0.5 NA intron (NM_007200, intron 6 of 36) intron (NM_007200, intron 6 of 36) -42465 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 173.75-55 chr5 68241708 68242120 + 0.5 NA intron (NM_181523, intron 2 of 15) intron (NM_181523, intron 2 of 15) 26158 NM_181523 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 164.5-61 chr4 113754334 113754944 + 0.5 NA 3' UTR (NM_001321592, exon 3 of 3) 3' UTR (NM_001321592, exon 3 of 3) 7099 NM_001321591 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 166.75-68 chr5 20147970 20148532 + 0.5 NA intron (NM_001291956, intron 2 of 14) AluY|SINE|Alu -157300 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 167.25-65 chr5 143743099 143743721 + 0.5 NA Intergenic Intergenic 63550 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 183.75-82 chr6 51286666 51287344 + 0.5 NA Intergenic Intergenic -334865 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 224.5-17 chr19 51066540 51067147 + 0.5 NA Intergenic LTR37A|LTR|ERV1 -1751 NM_001348177 26085 Hs.165296 NM_015596 ENSG00000167759 KLK13 KLK-L4|KLKL4 kallikrein related peptidase 13 protein-coding 145.75-56 chr2 98478681 98479183 + 0.5 NA intron (NM_001351428, intron 1 of 24) intron (NM_001351428, intron 1 of 24) 32922 NM_001351429 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 157-63 chr3 80141657 80142070 + 0.5 NA Intergenic L1MEg|LINE|L1 -373865 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 153.25-72 chr21 21632836 21633323 + 0.5 NA Intergenic Intergenic 104240 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 155.25-5 chr1 173600350 173600955 + 0.5 NA intron (NM_178527, intron 2 of 27) MER47A|DNA|TcMar-Tigger 2420 NM_178527 284525 Hs.494981 NM_178527 ENSG00000162753 SLC9C2 SLC9A11 solute carrier family 9 member C2 (putative) protein-coding 167.5-15 chr11 13422751 13423130 + 0.5 NA intron (NM_001297741, intron 1 of 7) intron (NM_001297741, intron 1 of 7) 17339 NM_001297742 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 194-24 chr17 55926915 55927519 + 0.5 NA Intergenic MIR|SINE|MIR 176112 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 154-109 chr8 133965939 133966444 + 0.5 NA Intergenic LTR33|LTR|ERVL 79695 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 151.25-66 chr3 190207581 190208004 + 0.5 NA Intergenic Charlie2a|DNA|hAT-Charlie -85355 NM_001134418 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 222-16 chr3 189063439 189064025 + 0.5 NA Intergenic L1MD1|LINE|L1 -108239 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 164.75-54 chr3 116374913 116375366 + 0.5 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) 15115 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 260.75-15 chr2 116748960 116749643 + 0.5 NA Intergenic Intergenic -1065390 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 158.25-112 chr8 90316368 90316971 + 0.5 NA intron (NR_051989, intron 2 of 3) LTR33C|LTR|ERVL 95181 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 184.5-26 chr12 52474603 52475133 + 0.5 NA Intergenic AluSx1|SINE|Alu -1063 NM_173086 286887 Hs.709234 NM_173086 ENSG00000170465 KRT6C K6E|KRT6E|PPKNEFD keratin 6C protein-coding 158.25-18 chr11 18129370 18129763 + 0.5 NA intron (NM_054031, intron 1 of 2) L1PB1|LINE|L1 -3005 NM_001370464 117195 Hs.380177 NM_054031 ENSG00000179826 MRGPRX3 GPCR|MRGX3|SNSR1|SNSR2 MAS related GPR family member X3 protein-coding 173.5-75 chr6 131598379 131598934 + 0.5 NA exon (NM_004830, exon 19 of 29) exon (NM_004830, exon 19 of 29) 25430 NM_000045 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 160.5-17 chr10 60810177 60810705 + 0.5 NA Intergenic Intergenic 31963 NM_001786 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 165.5-96 chr8 89753004 89753618 + 0.5 NA intron (NR_125822, intron 1 of 4) L1MC4a|LINE|L1 4400 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 250.25-12 chr19 41069461 41070128 + 0.5 NA Intergenic L1PA15|LINE|L1 -18657 NM_000766 1553 Hs.567252 NM_000766 ENSG00000197838 CYP2A13 CPAD|CYP2A|CYPIIA13 cytochrome P450 family 2 subfamily A member 13 protein-coding 186.75-74 chr5 155518652 155519079 + 0.5 NA Intergenic L1MA3|LINE|L1 505110 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 158.5-33 chr17 67958871 67959404 + 0.5 NA intron (NM_182641, intron 23 of 27) L3|LINE|CR1 34469 NM_181656 284018 Hs.90790 NM_181655 ENSG00000186665 C17orf58 - chromosome 17 open reading frame 58 protein-coding 148-51 chr2 96812000 96812467 + 0.5 NA TTS (NM_020184) TTS (NM_020184) 1424 NR_149141 100506036 Hs.656228 NR_149141 ENSG00000273265 CNNM3-DT - CNNM3 divergent transcript ncRNA 199-8 chr14 59768809 59769289 + 0.5 NA intron (NM_021136, intron 1 of 8) MER81|DNA|hAT-Blackjack 101727 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 168-43 chr21 31060610 31061051 + 0.5 NA Intergenic Intergenic -22354 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 157-102 chr8 122255598 122256203 + 0.5 NA Intergenic Intergenic 312744 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 187.5-10 chr11 96147351 96147958 + 0.5 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -193784 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 216.25-32 chr8 135558599 135559336 + 0.5 NA intron (NM_006558, intron 5 of 8) MLT1D|LTR|ERVL-MaLR 101511 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 171.75-50 chr3 18324885 18325337 + 0.5 NA Intergenic L1ME1|LINE|L1 100228 NM_002971 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 186.5-14 chr12 21256151 21256687 + 0.5 NA Intergenic L1M4c|LINE|L1 78498 NM_021094 6579 Hs.46440 NM_005075 ENSG00000084453 SLCO1A2 OATP|OATP-A|OATP1A2|SLC21A3 solute carrier organic anion transporter family member 1A2 protein-coding 163-75 chr7 27900429 27900938 + 0.5 NA intron (NM_175061, intron 2 of 4) intron (NM_175061, intron 2 of 4) 160588 NM_001206902 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 164.75-3 chr1 51175456 51175943 + 0.5 NA Intergenic Intergenic 59397 NR_147076 105378716 NR_147076 ENSG00000203356 LINC01562 - long intergenic non-protein coding RNA 1562 ncRNA 230.5-37 chr9 24309677 24310446 + 0.5 NA Intergenic Intergenic 235615 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 196.5-26 chr2 77066829 77067338 + 0.5 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 81118 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 163-88 chr8 139537903 139538370 + 0.5 NA Intergenic Intergenic 164987 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 172.75-9 chr10 98596672 98597333 + 0.5 NA intron (NM_021828, intron 9 of 11) THE1C|LTR|ERVL-MaLR -150039 NM_001322487 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 159.75-50 chr2 203519805 203520291 + 0.5 NA intron (NM_001329728, intron 1 of 15) AluJb|SINE|Alu 15253 NM_001329728 65059 Hs.471162 NM_025252 ENSG00000173166 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 202.75-19 chr14 50632198 50632917 + 0.5 NA 3' UTR (NM_001127713, exon 14 of 14) 3' UTR (NM_001127713, exon 14 of 14) 35749 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 193-16 chr12 40873156 40873672 + 0.5 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) -34943 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 153.75-65 chr5 86447976 86448452 + 0.5 NA Intergenic Intergenic 165770 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 181.5-27 chr14 104991154 104991843 + 0.5 NA exon (NM_174891, exon 3 of 5) exon (NM_174891, exon 3 of 5) 5219 NM_001364170 122616 Hs.27183 NM_174891 ENSG00000140104 CLBA1 C14orf79 clathrin binding box of aftiphilin containing 1 protein-coding 161.75-62 chr4 62320165 62320605 + 0.5 NA Intergenic MIR|SINE|MIR -158620 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 164.25-46 chr2 161449453 161449898 + 0.5 NA Intergenic AluSx4|SINE|Alu 33378 NM_006593 10716 Hs.210862 NM_006593 ENSG00000136535 TBR1 IDDAS|TBR-1|TES-56 T-box brain transcription factor 1 protein-coding 157.25-46 chr2 55967071 55967576 + 0.5 NA intron (NR_126406, intron 2 of 2) intron (NR_126406, intron 2 of 2) 15753 NR_029630 406999 NR_029630 ENSG00000207548 MIR217 MIRN217|mir-217 microRNA 217 ncRNA 165.5-79 chr6 48470790 48471204 + 0.5 NA Intergenic Intergenic -402308 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 152.5-45 chr18 55273266 55273796 + 0.5 NA intron (NM_001348216, intron 3 of 12) intron (NM_001348216, intron 3 of 12) 29129 NM_001348216 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 200.75-55 chr9 25269860 25270528 + 0.5 NA Intergenic Intergenic 408664 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 171.75-75 chr7 27088865 27089278 + 0.5 NA Intergenic Intergenic 6929 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 146.5-28 chr14 62154831 62155368 + 0.5 NA Intergenic L1PA16|LINE|L1 -15126 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 162.25-67 chr4 174168082 174168638 + 0.5 NA intron (NR_125896, intron 1 of 4) intron (NR_125896, intron 1 of 4) 52038 NR_125896 101928509 Hs.147719 NR_125896 ENSG00000248174 LINC02268 - long intergenic non-protein coding RNA 2268 ncRNA 150.25-105 chr8 130359989 130360470 + 0.5 NA intron (NM_001362925, intron 2 of 29) L2a|LINE|L2 -63696 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 151.25-107 chr9 106667776 106668277 + 0.5 NA intron (NR_104145, intron 5 of 6) MER53|DNA|hAT 51968 NR_104145 100996590 Hs.147110 NR_104145 ENSG00000234323 LINC01505 - long intergenic non-protein coding RNA 1505 ncRNA 152.75-42 chr18 57535921 57536319 + 0.5 NA Intergenic Intergenic 50582 NM_000140 2235 Hs.365365 NM_000140 ENSG00000066926 FECH EPP|EPP1|FCE ferrochelatase protein-coding 189.5-55 chr5 117419790 117420254 + 0.5 NA intron (NR_046089, intron 1 of 5) L1MB3|LINE|L1 4510 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 151 chr1 96619154 96619701 + 0.5 NA Intergenic MLT2A2|LTR|ERVL -102178 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 147.25-105 chr9 102857002 102857367 + 0.5 NA Intergenic Intergenic -138149 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 201.75-27 chr3 78193416 78194029 + 0.5 NA Intergenic Intergenic -144759 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 149.25-14 chr11 82462104 82462604 + 0.5 NA Intergenic L2c|LINE|L2 -58441 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 223-7 chr11 130469541 130470155 + 0.5 NA intron (NM_139055, intron 5 of 7) Charlie4a|DNA|hAT-Charlie 20874 NM_139055 170689 Hs.534221 NM_139055 ENSG00000166106 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif 15 protein-coding 160.5-55 chr20 41018047 41018512 + 0.5 NA intron (NR_145525, intron 2 of 2) L2c|LINE|L2 -10543 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI DNA topoisomerase I protein-coding 167.75-79 chr6 126660676 126661200 + 0.5 NA Intergenic Intergenic 176307 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 163-54 chr22 40931378 40931922 + 0.5 NA 3' UTR (NM_022098, exon 10 of 10) 3' UTR (NM_022098, exon 10 of 10) -19728 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 187.25-19 chr12 85856520 85857152 + 0.5 NA Intergenic MER52A|LTR|ERV1 -17459 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 162-22 chr13 67196004 67196543 + 0.5 NA intron (NM_001318372, intron 2 of 4) intron (NM_001318372, intron 2 of 4) 34063 NM_001318372 5101 Hs.654709 NM_020403 ENSG00000184226 PCDH9 - protocadherin 9 protein-coding 174-49 chr5 19957023 19957461 + 0.5 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) 30958 NM_001349560 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 212-14 chr15 83438272 83438963 + 0.5 NA Intergenic Intergenic -8611 NR_136711 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 173.25-53 chr3 185650849 185651412 + 0.5 NA intron (NR_138486, intron 12 of 15) AluJo|SINE|Alu -62122 NR_126326 646600 Hs.647949 NR_027317 ENSG00000163915 IGF2BP2-AS1 C3orf65 IGF2BP2 antisense RNA 1 ncRNA 173-63 chr5 111564687 111565136 + 0.5 NA intron (NR_040093, intron 1 of 6) intron (NR_040093, intron 1 of 6) -52314 NM_001308058 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 194-10 chr10 55957104 55957616 + 0.5 NA Intergenic Charlie11|DNA|hAT-Charlie -329418 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 160.25-70 chr7 23404314 23404716 + 0.5 NA intron (NM_006547, intron 3 of 14) intron (NM_006547, intron 3 of 14) 8069 NR_145734 109616981 NR_145734 ENSG00000212264 SNORD65C - small nucleolar RNA, C/D box 65C snoRNA 165.25-47 chr4 162124126 162124685 + 0.5 NA intron (NM_001128428, intron 1 of 14) intron (NM_001128428, intron 1 of 14) 39595 NM_020116 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 240.25-7 chr12 6754473 6755096 + 0.5 NA Intergenic AluSg|SINE|Alu -1643 NR_026581 8079 Hs.524214 NM_005439 ENSG00000089693 MLF2 NTN4 myeloid leukemia factor 2 protein-coding 150-82 chr7 89162332 89162710 + 0.5 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -366784 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 180.75-48 chr4 88029108 88029598 + 0.5 NA intron (NR_156488, intron 2 of 13) intron (NR_156488, intron 2 of 13) 21718 NR_156488 5311 Hs.181272 NM_000297 ENSG00000118762 PKD2 APKD2|PC2|PKD4|Pc-2|TRPP2 polycystin 2, transient receptor potential cation channel protein-coding 184.75-33 chr16 69837794 69838384 + 0.5 NA promoter-TSS (NM_001270453) promoter-TSS (NM_001270453) -648 NM_001270453 11060 Hs.408458 NM_007014 ENSG00000198373 WWP2 AIP2|WWp2-like WW domain containing E3 ubiquitin protein ligase 2 protein-coding 246-14 chr9 11809926 11810481 + 0.5 NA Intergenic L1PA15|LINE|L1 -883182 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 219.5 chr1 32969397 32970197 + 0.5 NA Intergenic Intergenic -4988 NM_153341 127544 Hs.591504 NM_153341 ENSG00000116514 RNF19B IBRDC3|NKLAM ring finger protein 19B protein-coding 173.75-77 chrX 103464739 103465423 + 0.5 NA Intergenic Intergenic 54408 NM_080879 142684 Hs.706904 NM_080879 ENSG00000172476 RAB40A RAR2|RAR2A RAB40A, member RAS oncogene family protein-coding 162.5-18 chr11 82117958 82118373 + 0.5 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) -227329 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 201.5-17 chr16 87340441 87341133 + 0.5 NA intron (NM_024735, intron 5 of 8) AluJb|SINE|Alu 23278 NR_135180 101928659 Hs.667450 NR_135180 ENSG00000270006 LOC101928659 - uncharacterized LOC101928659 ncRNA 158.25-38 chr14 70590377 70590864 + 0.5 NA intron (NM_001284210, intron 5 of 6) intron (NM_001284210, intron 5 of 6) 10070 NM_001284210 10001 Hs.497353 NM_005466 ENSG00000133997 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 161-83 chr7 108300735 108301231 + 0.5 NA intron (NM_001371126, intron 3 of 32) intron (NM_001371126, intron 3 of 32) 27543 NM_001371179 188.25-47 chr5 99903617 99904048 + 0.5 NA Intergenic Intergenic 369842 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 217.25-4 chr1 160803965 160804586 + 0.5 NA intron (NM_002348, intron 2 of 9) L1PB4|LINE|L1 8101 NM_002348 4063 Hs.403857 NM_002348 ENSG00000122224 LY9 CD229|SLAMF3|hly9|mLY9 lymphocyte antigen 9 protein-coding 177.5-27 chr2 25733148 25733636 + 0.5 NA TTS (NM_018263) TTS (NM_018263) -59718 NM_001256304 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 152-22 chr14 72027899 72028311 + 0.5 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 94578 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 293-10 chr8 81979324 81980138 + 0.5 NA Intergenic L3|LINE|CR1 -137445 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 242.75-11 chr15 56907732 56908386 + 0.5 NA intron (NR_015419, intron 2 of 3) intron (NR_015419, intron 2 of 3) -10031 NM_001322151 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 149.75-19 chr11 125632027 125632431 + 0.5 NA intron (NM_001274, intron 5 of 12) intron (NM_001274, intron 5 of 12) 5873 NM_001274 1111 Hs.24529 NM_001274 ENSG00000149554 CHEK1 CHK1 checkpoint kinase 1 protein-coding 240.75-27 chrX 27335708 27336416 + 0.5 NA Intergenic Intergenic 127279 NM_207319 139420 Hs.350673 NM_207319 ENSG00000224960 PPP4R3C FLFL3P|PPP4R3CP|SMEK3P|smk1 protein phosphatase 4 regulatory subunit 3C protein-coding 207.25-32 chr2 62360071 62360708 + 0.5 NA Intergenic AluSq|SINE|Alu 144868 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 156.5-96 chr6 54341070 54341666 + 0.5 NA intron (NM_014464, intron 4 of 10) intron (NM_014464, intron 4 of 10) 32927 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 166.75-25 chr14 49845660 49846072 + 0.5 NA intron (NM_001301732, intron 4 of 31) intron (NM_001301732, intron 4 of 31) 6922 NM_004713 9147 Hs.655964 NM_004713 ENSG00000165525 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 163.25-62 chr5 134829349 134829975 + 0.5 NA non-coding (NR_125341, exon 23 of 23) non-coding (NR_125341, exon 23 of 23) -16018 NM_152409 134553 Hs.708536 NM_152409 ENSG00000181904 C5orf24 - chromosome 5 open reading frame 24 protein-coding 167-39 chr2 50002386 50003028 + 0.5 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) -28504 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 240.75-14 chr3 14529998 14530573 + 0.5 NA intron (NM_001080423, intron 1 of 23) L1MEd|LINE|L1 10057 NM_001080423 80852 Hs.517819 NM_001080423 ENSG00000144596 GRIP2 - glutamate receptor interacting protein 2 protein-coding 148.5-96 chr8 59375431 59375786 + 0.5 NA Intergenic Intergenic 256398 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 164.25-26 chr14 21054706 21055128 + 0.5 NA intron (NM_001282211, intron 1 of 14) intron (NM_001282211, intron 1 of 14) -2905 NM_138331 122665 Hs.553572 NM_138331 ENSG00000173431 RNASE8 RAE2 ribonuclease A family member 8 protein-coding 182.25-43 chr5 124553999 124554522 + 0.5 NA Intergenic MamRep137|DNA|TcMar-Tigger -115740 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 191.25-29 chr16 7740981 7741553 + 0.5 NA Intergenic MIR|SINE|MIR 408422 NM_145892 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 220.5-36 chr8 24678179 24678805 + 0.5 NA Intergenic L1M4|LINE|L1 -129874 NR_125808 101929294 Hs.637673 NR_125808 LOC101929294 - uncharacterized LOC101929294 ncRNA 165.5-12 chr10 9606639 9607292 + 0.5 NA Intergenic FLAM_C|SINE|Alu -311372 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 197.25-13 chr10 116869537 116869981 + 0.5 NA intron (NM_001242699, intron 8 of 13) intron (NM_001242699, intron 8 of 13) -20037 NM_001330164 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 193-52 chr7 95315970 95316509 + 0.5 NA intron (NM_000446, intron 3 of 8) intron (NM_000446, intron 3 of 8) 8293 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 202.5-62 chr8 118416150 118416582 + 0.5 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -204635 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 244.25-15 chr3 106473271 106474004 + 0.5 NA Intergenic AluSx1|SINE|Alu -604236 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 195-51 chrX 40994523 40995111 + 0.5 NA Intergenic AluSx3|SINE|Alu -90628 NM_001039591 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9 X-linked protein-coding 165 chr1 35549624 35550129 + 0.5 NA intron (NM_024874, intron 2 of 20) L2a|LINE|L2 7527 NM_024874 79932 Hs.456507 NM_024874 ENSG00000142687 KIAA0319L AAVR|AAVRL KIAA0319 like protein-coding 152.5-60 chr20 6531181 6531654 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 104685 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 148.75-105 chr8 138465197 138465604 + 0.5 NA intron (NM_001362965, intron 1 of 19) MIRb|SINE|MIR 31861 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 179-57 chr6 163778619 163779160 + 0.5 NA Intergenic Intergenic -107405 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 178.5-39 chr2 106230041 106230651 + 0.5 NA Intergenic L1MC5|LINE|L1 -36007 NR_045607 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 185.5-61 chr5 155078102 155078625 + 0.5 NA Intergenic Intergenic 64608 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 190.5-39 chr3 182312763 182313171 + 0.5 NA Intergenic L1PA10|LINE|L1 173395 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 208.25-38 chr9 37554433 37554986 + 0.5 NA intron (NM_012166, intron 1 of 10) L1ME2z|LINE|L1 21671 NM_012166 26267 Hs.709527 NM_012166 ENSG00000147912 FBXO10 FBX10|PRMT11 F-box protein 10 protein-coding 244-2 chr10 61415776 61416640 + 0.5 NA intron (NR_134508, intron 4 of 6) L3|LINE|CR1 -36431 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 155.5-116 chrX 126667745 126668129 + 0.5 NA Intergenic L1ME4a|LINE|L1 -115123 NM_178470 139170 Hs.120403 NM_178470 ENSG00000198889 DCAF12L1 KIAA1892L|WDR40B DDB1 and CUL4 associated factor 12 like 1 protein-coding 222.75-23 chr3 70505446 70506051 + 0.5 NA Intergenic Intergenic -193110 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 218.75-8 chr17 57581537 57582145 + 0.5 NA intron (NM_001322250, intron 7 of 13) intron (NM_001322250, intron 7 of 13) 26571 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 257.25-24 chr8 62251046 62251786 + 0.5 NA intron (NM_001304533, intron 1 of 6) MER63C|DNA|hAT-Blackjack 2562 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 186.75-82 chr9 26180098 26180551 + 0.5 NA Intergenic L4_B_Mam|LINE|RTE-X 113649 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 267-4 chr20 25668759 25669587 + 0.5 NA intron (NR_126465, intron 2 of 3) intron (NR_126465, intron 2 of 3) 17766 NM_001290261 26152 Hs.61881 NM_015655 ENSG00000130684 ZNF337 - zinc finger protein 337 protein-coding 178.75-69 chr8 103701332 103701868 + 0.5 NA intron (NM_001348497, intron 2 of 22) L1MA4|LINE|L1 -117620 NM_001348503 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 150.25-89 chr5 177234115 177234547 + 0.5 NA intron (NM_172349, intron 6 of 23) Tigger4|DNA|TcMar-Tigger 69388 NM_001031677 53917 Hs.16258 NM_130781 ENSG00000169228 RAB24 - RAB24, member RAS oncogene family protein-coding 157-26 chr11 128215731 128216183 + 0.5 NA intron (NR_146647, intron 3 of 3) intron (NR_146647, intron 3 of 3) 7191 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 199.25-52 chr5 65273540 65274255 + 0.5 NA intron (NM_197941, intron 11 of 24) intron (NM_197941, intron 11 of 24) 208023 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 174.25-59 chr6 78713829 78714261 + 0.5 NA Intergenic (TGTTT)n|Simple_repeat|Simple_repeat -153506 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 151.75-81 chr5 128920212 128920804 + 0.5 NA Intergenic Intergenic -44619 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 168.25-38 chr2 150432695 150433153 + 0.5 NA Intergenic Intergenic 54771 NM_001254738 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 251.75-11 chr17 53898721 53899317 + 0.5 NA Intergenic Intergenic 76092 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 149.75-43 chr2 178826729 178827072 + 0.5 NA Intergenic L1M4|LINE|L1 -19477 NM_133432 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 232.75-13 chr2 134613822 134614551 + 0.5 NA intron (NM_030923, intron 2 of 7) L1M4|LINE|L1 104814 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 248 chr1 218472033 218472773 + 0.5 NA intron (NR_031644, intron 2 of 6) MER58D|DNA|hAT-Charlie 29777 NR_125715 103611157 Hs.133379 NR_125715 ENSG00000281453 TGFB2-OT1 - TGFB2 overlapping transcript 1 ncRNA 236.5-20 chr3 90045705 90046279 + 0.5 NA Intergenic ERVL-B4-int|LTR|ERVL 938371 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 166.5-37 chr2 12529510 12530015 + 0.5 NA intron (NR_110196, intron 4 of 5) L1M4|LINE|L1 -187110 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 181.5-60 chr6 66569948 66570412 + 0.5 NA Intergenic MER50|LTR|ERV1 782301 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 199.25-25 chr17 51881430 51882201 + 0.5 NA intron (NM_001082533, intron 4 of 9) L1ME3G|LINE|L1 276899 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 267-14 chr9 102214235 102214882 + 0.5 NA Intergenic Intergenic -305079 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 148-41 chr18 10985598 10986052 + 0.5 NA intron (NM_022068, intron 2 of 51) L1MA10|LINE|L1 162937 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 182.5-24 chr2 27329427 27329979 + 0.5 NA intron (NM_001318909, intron 12 of 18) intron (NM_001318909, intron 12 of 18) -5839 NR_038427 100505624 Hs.666503 NR_038427 ENSG00000234945 GTF3C2-AS1 - GTF3C2 antisense RNA 1 ncRNA 199.75-33 chr20 39535541 39536043 + 0.5 NA Intergenic Intergenic -311044 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 188-20 chr13 101473353 101474028 + 0.5 NA intron (NM_001271755, intron 2 of 9) L1MA3|LINE|L1 -16262 NM_001271756 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 145.75-49 chr2 52678151 52678611 + 0.5 NA Intergenic Intergenic 24234 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 177.5-46 chr6 45293387 45294076 + 0.5 NA intron (NM_001350325, intron 2 of 10) L1PB1|LINE|L1 -34586 NM_001015051 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 146.75-55 chr2 132741341 132741838 + 0.5 NA intron (NM_207481, intron 14 of 17) intron (NM_207481, intron 14 of 17) -70063 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 199-7 chr13 90729080 90729616 + 0.5 NA Intergenic Intergenic 197249 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 208.25-25 chr3 12513123 12513773 + 0.5 NA intron (NM_025265, intron 6 of 11) intron (NM_025265, intron 6 of 11) 28919 NM_001321279 80746 Hs.335550 NM_025265 ENSG00000154743 TSEN2 PCH2B|SEN2|SEN2L tRNA splicing endonuclease subunit 2 protein-coding 160.75-17 chr11 62106303 62106740 + 0.5 NA Intergenic Intergenic -17490 NM_001040694 3619 Hs.142179 NM_020238 ENSG00000149503 INCENP - inner centromere protein protein-coding 150.25-86 chr5 149795834 149796255 + 0.5 NA intron (NM_001172699, intron 1 of 10) L2a|LINE|L2 24104 NM_001172699 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 164.5-54 chr3 89136960 89137474 + 0.5 NA intron (NM_182644, intron 2 of 6) intron (NM_182644, intron 2 of 6) 29596 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 184-5 chr1 208109902 208110555 + 0.5 NA intron (NM_025179, intron 4 of 31) intron (NM_025179, intron 4 of 31) 134156 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 146-50 chr3 24330398 24330818 + 0.5 NA intron (NM_001252634, intron 2 of 11) L1ME3Cz|LINE|L1 -163479 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 160-65 chr5 37958969 37959495 + 0.5 NA Intergenic L1MEc|LINE|L1 10741 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 151.75-120 chr9 75776242 75776718 + 0.5 NA Intergenic L1MA3|LINE|L1 -114164 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 190.5-67 chr8 126241119 126241741 + 0.5 NA Intergenic Intergenic -84065 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 149.5-66 chr4 41752797 41753305 + 0.5 NA Intergenic Intergenic -4081 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 231.25-10 chr12 9104086 9104868 + 0.5 NA intron (NM_000014, intron 10 of 35) L2a|LINE|L2 11752 NM_001347424 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 147-14 chr10 105949618 105949952 + 0.5 NA Intergenic Intergenic -129452 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 188.5-27 chr2 37033638 37034184 + 0.5 NA intron (NM_019024, intron 21 of 35) Tigger15a|DNA|TcMar-Tigger 50461 NM_019024 54497 Hs.744084 NM_019024 ENSG00000008869 HEATR5B - HEAT repeat containing 5B protein-coding 195-19 chr14 63444841 63445418 + 0.5 NA intron (NR_104104, intron 2 of 12) MIR3|SINE|MIR 63109 NM_001282181 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 150.75-43 chr2 182590513 182590902 + 0.5 NA Intergenic Intergenic -67862 NM_001258312 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 223-10 chr14 52660607 52661389 + 0.5 NA intron (NM_014584, intron 9 of 15) intron (NM_014584, intron 9 of 15) 34560 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 211.25-43 chr7 13982755 13983509 + 0.5 NA intron (NM_001370556, intron 3 of 11) intron (NM_001370556, intron 3 of 11) 3382 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 179-59 chr7 28825421 28825897 + 0.5 NA 3' UTR (NM_004904, exon 11 of 11) 3' UTR (NM_004904, exon 11 of 11) 132671 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 225-23 chr7 29567068 29567775 + 0.5 NA TTS (NM_175887) TTS (NM_175887) 1888 NM_001329997 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 156-67 chr4 74368846 74369400 + 0.5 NA intron (NM_001432, intron 1 of 4) intron (NM_001432, intron 1 of 4) 3978 NM_001432 2069 Hs.115263 NM_001432 ENSG00000124882 EREG EPR|ER|Ep epiregulin protein-coding 165.75-46 chr2 121012590 121013048 + 0.5 NA Intergenic L1MB5|LINE|L1 220538 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 150-48 chr20 35457235 35457631 + 0.5 NA intron (NM_007186, intron 1 of 34) AluJr|SINE|Alu 1835 NM_007186 11190 Hs.443976 NM_007186 ENSG00000126001 CEP250 C-NAP1|CEP2|CNAP1|CRDHL2 centrosomal protein 250 protein-coding 178.5-20 chr12 114245413 114245957 + 0.5 NA Intergenic LTR33|LTR|ERVL -3915 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 170-37 chr21 31633599 31634097 + 0.5 NA Intergenic L1MB1|LINE|L1 -25774 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 157.75-94 chr5 148370551 148371072 + 0.5 NA intron (NR_105057, intron 2 of 4) MIRc|SINE|MIR 13039 NR_105057 102546294 Hs.660461 NR_105057 ENSG00000247199 LOC102546294 - uncharacterized LOC102546294 ncRNA 146.25-67 chr3 158183865 158184225 + 0.5 NA intron (NM_001271834, intron 3 of 8) intron (NM_001271834, intron 3 of 8) 73956 NM_001271838 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|MRT70|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 182-54 chr7 80788670 80789319 + 0.5 NA intron (NM_006379, intron 12 of 17) intron (NM_006379, intron 12 of 17) 130057 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 162.5 chr1 19305602 19306158 + 0.5 NA intron (NM_001320979, intron 5 of 5) intron (NM_001320979, intron 5 of 5) 6266 NM_003689 8574 Hs.571886 NM_003689 ENSG00000053371 AKR7A2 AFAR|AFAR1|AFB1-AR1|AKR7 aldo-keto reductase family 7 member A2 protein-coding 176.75-64 chr4 61160928 61161542 + 0.5 NA Intergenic Intergenic 17579 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 161.75-86 chr7 137474685 137475160 + 0.5 NA intron (NM_001321710, intron 24 of 32) MIRb|SINE|MIR -131189 NM_001321387 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 238.25-10 chr17 58703050 58703814 + 0.5 NA intron (NM_058216, intron 4 of 8) intron (NM_058216, intron 4 of 8) 10830 NM_058216 5889 Hs.412587 NM_002876 ENSG00000108384 RAD51C BROVCA3|FANCO|R51H3|RAD51L2 RAD51 paralog C protein-coding 147.25-58 chr3 105287104 105287638 + 0.5 NA Intergenic Intergenic -79342 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 152-28 chr17 59789102 59789435 + 0.5 NA intron (NM_001329400, intron 5 of 9) intron (NM_001329400, intron 5 of 9) -51998 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 155.75-105 chr8 119098054 119098612 + 0.5 NA intron (NM_001324095, intron 5 of 7) intron (NM_001324095, intron 5 of 7) -29551 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 168.75-64 chr3 18670529 18671032 + 0.5 NA Intergenic Intergenic -225188 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 149.25-94 chr6 155214289 155214827 + 0.5 NA intron (NM_012454, intron 14 of 25) intron (NM_012454, intron 14 of 25) -2408 NM_001010927 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 190-60 chr6 152179865 152180480 + 0.5 NA exon (NM_033071, exon 128 of 146) exon (NM_033071, exon 128 of 146) 5206 NM_001347701 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 149.75-46 chr2 193262326 193262786 + 0.5 NA Intergenic Intergenic 512711 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 170.5-40 chr2 174867090 174867759 + 0.5 NA intron (NR_038133, intron 5 of 11) intron (NR_038133, intron 5 of 11) -19806 NM_001206602 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 186.5-62 chr5 153237136 153237570 + 0.5 NA Intergenic Intergenic -253171 NM_001258019 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 165.75-75 chr4 130624471 130624941 + 0.5 NA Intergenic Intergenic 248345 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 163-44 chr2 100005687 100006264 + 0.5 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 99608 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 162.25-41 chr2 196775560 196776178 + 0.5 NA intron (NM_012086, intron 12 of 17) intron (NM_012086, intron 12 of 17) 23814 NM_012086 9330 Hs.470996 NM_012086 ENSG00000119041 GTF3C3 TFIIIC102|TFIIICgamma|TFiiiC2-102 general transcription factor IIIC subunit 3 protein-coding 186.5-3 chr1 56719822 56720396 + 0.5 NA intron (NM_001004303, intron 18 of 19) intron (NM_001004303, intron 18 of 19) -74791 NR_135111 101929935 NR_135111 LOC101929935 - uncharacterized LOC101929935 ncRNA 169.5-22 chr11 82751456 82752056 + 0.5 NA Intergenic L2a|LINE|L2 -17892 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 277.75-7 chr2 205741532 205742468 + 0.5 NA intron (NM_018534, intron 8 of 15) intron (NM_018534, intron 8 of 15) 59499 NM_201266 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 170.5-6 chr10 16643467 16643968 + 0.5 NA intron (NM_152724, intron 7 of 7) MIR|SINE|MIR -121838 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 156.25-79 chr6 39157048 39157516 + 0.5 NA Intergenic Intergenic -42096 NM_018322 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 153.25-109 chr8 56480107 56480687 + 0.5 NA intron (NR_125813, intron 1 of 3) L1M5|LINE|L1 -33756 NM_001135690 5179 Hs.339831 NM_006211 ENSG00000181195 PENK PE|PENK-A proenkephalin protein-coding 191.75-66 chr8 117627611 117628239 + 0.5 NA Intergenic L2a|LINE|L2 107212 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 149.25-58 chr3 6220544 6220994 + 0.5 NA Intergenic MER45B|DNA|hAT-Tip100 584680 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 146.25-105 chrX 18704245 18704638 + 0.5 NA intron (NM_152226, intron 3 of 17) intron (NM_152226, intron 3 of 17) -11754 NR_046642 100874004 NR_046642 PPEF1-AS1 - PPEF1 antisense RNA 1 ncRNA 166.75-31 chr16 46713561 46714098 + 0.5 NA intron (NM_182493, intron 9 of 12) L1MA8|LINE|L1 24170 NM_014321 23594 Hs.49760 NM_014321 ENSG00000091651 ORC6 ORC6L origin recognition complex subunit 6 protein-coding 156.75-24 chr11 77060503 77060873 + 0.5 NA Intergenic MSTB1|LTR|ERVL-MaLR -6283 NM_004055 726 Hs.248153 NM_004055 ENSG00000149260 CAPN5 ADNIV|HTRA3|VRNI|nCL-3 calpain 5 protein-coding 163.25-67 chr7 24888868 24889422 + 0.5 NA intron (NR_104111, intron 1 of 21) L1MA8|LINE|L1 3476 NR_104111 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 158-79 chr6 139366490 139367078 + 0.5 NA Intergenic AluSc|SINE|Alu 7429 NM_001168389 10370 Hs.82071 NM_006079 ENSG00000164442 CITED2 ASD8|MRG-1|MRG1|P35SRJ|VSD2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 protein-coding 158.25-16 chr10 126537866 126538221 + 0.5 NA intron (NM_001350922, intron 2 of 8) THE1B|LTR|ERVL-MaLR -16550 NM_001004298 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 166.75-65 chr4 169030540 169031024 + 0.5 NA Intergenic Intergenic -20527 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 207-52 chr8 91066826 91067629 + 0.5 NA TTS (NR_110439) TTS (NR_110439) 2962 NR_110439 100506365 Hs.153412 NR_110438 ENSG00000253738 OTUD6B-AS1 GS1-251I9.4 OTUD6B antisense RNA 1 (head to head) ncRNA 357.25-4 chr8 127678920 127680018 + 0.5 NA Intergenic Intergenic 54498 NR_117101 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 190-43 chr4 58354802 58355282 + 0.5 NA Intergenic Intergenic 181286 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 164-13 chr11 74899171 74899721 + 0.5 NA intron (NM_001270381, intron 8 of 15) L1MA2|LINE|L1 49645 NM_182969 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 169.75-3 chr1 84615979 84616455 + 0.5 NA intron (NR_125761, intron 2 of 2) L1MA6|LINE|L1 4814 NR_125761 103695366 Hs.576097 NR_125761 LINC01461 TCONS_00001552 long intergenic non-protein coding RNA 1461 ncRNA 153.5-117 chr9 14088035 14088646 + 0.5 NA intron (NR_161384, intron 7 of 7) intron (NR_161384, intron 7 of 7) 92462 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 158.25-86 chr5 64616163 64616757 + 0.5 NA Intergenic Intergenic 40810 NR_073511 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 147.5-75 chr5 26684029 26684478 + 0.5 NA Intergenic Intergenic 354333 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 169.25-13 chr14 73992050 73992571 + 0.5 NA intron (NM_001249, intron 3 of 15) intron (NM_001249, intron 3 of 15) 26978 NM_001321985 957 Hs.655070 NM_001249 ENSG00000187097 ENTPD5 CD39L4|NTPDase-5|PCPH ectonucleoside triphosphate diphosphohydrolase 5 (inactive) protein-coding 173.25-19 chr12 76816861 76817277 + 0.5 NA intron (NM_015336, intron 7 of 16) intron (NM_015336, intron 7 of 16) 52811 NM_001359626 23390 Hs.4014 NM_015336 ENSG00000186908 ZDHHC17 DHHC-17|HIP14|HIP3|HSPC294|HYPH zinc finger DHHC-type containing 17 protein-coding 149.25-53 chr2 208707323 208707724 + 0.5 NA intron (NR_136588, intron 3 of 5) L1ME1|LINE|L1 164881 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 165.5-64 chr4 33453672 33454255 + 0.5 NA Intergenic L1PA15-16|LINE|L1 585930 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 169.25-36 chr3 126432857 126433459 + 0.5 NA exon (NM_182628, exon 14 of 17) exon (NM_182628, exon 14 of 17) 38249 NM_182628 348807 Hs.591305 NM_182628 ENSG00000163885 CFAP100 CCDC37|MIA1 cilia and flagella associated protein 100 protein-coding 151-25 chr16 14206078 14206605 + 0.5 NA intron (NM_001365411, intron 1 of 14) intron (NM_001365411, intron 1 of 14) 19655 NM_001365414 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 200.25-7 chr10 82830068 82830551 + 0.5 NA intron (NR_163252, intron 3 of 8) intron (NR_163252, intron 3 of 8) -597389 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 176-47 chr4 33065094 33065691 + 0.5 NA Intergenic Intergenic 714354 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 161.5-70 chr4 116421225 116421821 + 0.5 NA Intergenic MSTC|LTR|ERVL-MaLR 121798 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 241.75-7 chr14 58160661 58161511 + 0.5 NA Intergenic L2a|LINE|L2 -8873 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 153.75-78 chr6 127542313 127542852 + 0.5 NA Intergenic Intergenic -23558 NM_001012279 387104 Hs.319247 NM_001012279 ENSG00000255330 SOGA3 C6orf174|dJ403A15.3 SOGA family member 3 protein-coding 166-8 chr10 63725682 63726110 + 0.5 NA Intergenic L1PA17|LINE|L1 -204006 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 200.25-21 chr16 9020202 9020683 + 0.5 NA Intergenic AluSx|SINE|Alu -56536 NM_003470 7874 Hs.386939 NM_003470 ENSG00000187555 USP7 HAUSP|TEF1 ubiquitin specific peptidase 7 protein-coding 191.25-5 chr1 93584933 93585441 + 0.5 NA promoter-TSS (NM_001308251) promoter-TSS (NM_001308251) -25 NM_001308251 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 AND-34|NSP2|SH2D3B BCAR3 adaptor protein, NSP family member protein-coding 186.75-71 chr5 89023811 89024287 + 0.5 NA intron (NR_136221, intron 3 of 6) intron (NR_136221, intron 3 of 6) -119944 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 159-90 chr9 104913373 104913904 + 0.5 NA intron (NM_005502, intron 1 of 49) intron (NM_005502, intron 1 of 49) 14517 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 152.25-84 chr5 132702319 132702806 + 0.5 NA exon (NM_001300791, exon 14 of 19) exon (NM_001300791, exon 14 of 19) -19933 NR_134248 105379176 Hs.73917 NR_134248 LOC105379176 - uncharacterized LOC105379176 ncRNA 150.25-71 chr4 103647326 103647795 + 0.5 NA intron (NM_001059, intron 3 of 4) intron (NM_001059, intron 3 of 4) 72425 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 146.75-100 chr7 15671935 15672465 + 0.5 NA intron (NR_134258, intron 1 of 3) intron (NR_134258, intron 1 of 3) 4253 NR_134258 105375166 Hs.658822 NR_134258 ENSG00000237070 LOC105375166 - uncharacterized LOC105375166 ncRNA 164-4 chr1 197609434 197609812 + 0.5 NA intron (NR_125340, intron 11 of 19) intron (NR_125340, intron 11 of 19) 165857 NR_125340 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 147-66 chr3 95296297 95296664 + 0.5 NA Intergenic Intergenic 358217 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 149.5-45 chr2 99364559 99365108 + 0.5 NA intron (NM_015904, intron 6 of 23) intron (NM_015904, intron 6 of 23) 27444 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 306.5-3 chr2 138625384 138626246 + 0.5 NA Intergenic Intergenic 124045 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 156.75-41 chr16 83900329 83900672 + 0.5 NA intron (NM_012213, intron 1 of 4) AluJb|SINE|Alu 1385 NM_012213 23417 Hs.644610 NM_012213 ENSG00000103150 MLYCD MCD malonyl-CoA decarboxylase protein-coding 187.75-60 chr6 10391280 10391941 + 0.5 NA Intergenic Intergenic -12892 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 158.5-76 chr4 84797060 84797531 + 0.5 NA intron (NM_014991, intron 18 of 67) intron (NM_014991, intron 18 of 67) -168321 NR_152774 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 160.25-6 chr1 241511795 241512230 + 0.5 NA exon (NM_000143, exon 4 of 10) exon (NM_000143, exon 4 of 10) 7773 NM_000143 2271 Hs.592490 NM_000143 ENSG00000091483 FH FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1 fumarate hydratase protein-coding 198.25 chr1 190568827 190569477 + 0.5 NA Intergenic L1MA9|LINE|L1 -55738 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 149-54 chr21 18252224 18252659 + 0.5 NA intron (NM_001204174, intron 1 of 5) intron (NM_001204174, intron 1 of 5) 6566 NM_001204174 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 194.5-6 chr10 55466999 55467576 + 0.5 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -131755 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 202.75-46 chr8 123828091 123828774 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR -23555 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 210.75-2 chr1 111580386 111580891 + 0.5 NA intron (NM_001370216, intron 1 of 7) AluSg4|SINE|Alu -16635 NM_001302680 57413 Hs.281342 NM_020683 ENSG00000121933 TMIGD3 AD026 transmembrane and immunoglobulin domain containing 3 protein-coding 164.25-50 chr2 224651930 224652519 + 0.5 NA Intergenic AluSq2|SINE|Alu -66827 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 164.75-4 chr1 106921479 106921891 + 0.5 NA Intergenic Intergenic 103446 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 155.5-19 chr11 112385095 112385511 + 0.5 NA Intergenic L1ME1|LINE|L1 -96929 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 182.75-32 chr18 76069884 76070571 + 0.5 NA Intergenic L1MEg|LINE|L1 -52771 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 157.5-29 chr14 51615283 51615858 + 0.5 NA intron (NM_001042481, intron 2 of 14) intron (NM_001042481, intron 2 of 14) -15618 NR_051990 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 157-61 chr3 66299460 66300025 + 0.5 NA intron (NM_001350992, intron 4 of 8) intron (NM_001350992, intron 4 of 8) 78739 NM_001350991 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 166-76 chr8 76929247 76929752 + 0.5 NA Intergenic L1M4|LINE|L1 37351 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 154.75-108 chr9 85251745 85252237 + 0.5 NA Intergenic Intergenic 490038 NM_015239 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 158.5-61 chr22 27367136 27367562 + 0.5 NA Intergenic Intergenic 56698 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 148.5-93 chr7 112275299 112275809 + 0.5 NA intron (NM_021994, intron 1 of 11) intron (NM_021994, intron 1 of 11) 68859 NM_021994 11179 Hs.655904 NM_021994 ENSG00000198839 ZNF277 NRIF4|ZNF277P zinc finger protein 277 protein-coding 194-2 chr1 90369595 90370080 + 0.5 NA Intergenic AluJr|SINE|Alu -287913 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 164.25-24 chr12 119102933 119103528 + 0.5 NA intron (NM_194286, intron 2 of 12) intron (NM_194286, intron 2 of 12) 73254 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 228-30 chr8 78631049 78631835 + 0.5 NA Intergenic FordPrefect|DNA|hAT-Tip100 -34647 NM_001362969 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 147.75-50 chr2 12516220 12516711 + 0.5 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) -200407 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 158.25-61 chr22 27665408 27665904 + 0.5 NA Intergenic Intergenic 136100 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 166.75-75 chr6 45704356 45704764 + 0.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR 233037 NR_045674 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 194-38 chr5 15502513 15502918 + 0.5 NA intron (NM_001278317, intron 1 of 3) intron (NM_001278317, intron 1 of 3) 1277 NM_001278317 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 147-64 chr3 73204189 73204568 + 0.5 NA Intergenic Intergenic 142719 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 215.5-28 chr2 103997772 103998410 + 0.5 NA Intergenic Intergenic 410241 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 190.25-18 chr2 103523548 103524104 + 0.5 NA Intergenic HAL1ME|LINE|L1 -539397 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 186.5-37 chr3 35119656 35120379 + 0.5 NA intron (NR_110817, intron 2 of 3) MLT1J|LTR|ERVL-MaLR 274006 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 160.25-74 chr7 124596096 124596581 + 0.5 NA Intergenic L2|LINE|L2 169454 NM_005302 2861 Hs.406094 NM_005302 ENSG00000170775 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 protein-coding 160.25-52 chr4 42355230 42355735 + 0.5 NA intron (NR_134668, intron 1 of 1) intron (NR_134668, intron 1 of 1) 35786 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 190.5-69 chrX 41888782 41889449 + 0.5 NA intron (NM_003688, intron 1 of 26) intron (NM_003688, intron 1 of 26) 33919 NM_003688 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 202.5-53 chr5 173998969 173999472 + 0.5 NA intron (NM_001144954, intron 2 of 4) MIRb|SINE|MIR 10050 NM_001144954 133491 Hs.131469 NM_001144954 ENSG00000185056 C5orf47 - chromosome 5 open reading frame 47 protein-coding 195.25-50 chr7 31801207 31801912 + 0.5 NA intron (NM_001322057, intron 17 of 17) L1MEc|LINE|L1 114344 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 146-48 chr2 235535032 235535394 + 0.5 NA intron (NM_001037131, intron 1 of 17) CpG -17292 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 213.25-45 chr7 97960971 97961525 + 0.5 NA intron (NR_147989, intron 1 of 18) SATR2|Satellite|Satellite -2410 NR_049875 100847066 NR_049875 ENSG00000266318 MIR5692A1 - microRNA 5692a-1 ncRNA 215.5-46 chr6 138981039 138981695 + 0.5 NA intron (NM_031922, intron 1 of 19) intron (NM_031922, intron 1 of 19) 6894 NM_031922 85021 Hs.334603 NM_031922 ENSG00000135597 REPS1 NBIA7|RALBP1 RALBP1 associated Eps domain containing 1 protein-coding 160.5-49 chr2 58151268 58151842 + 0.5 NA intron (NM_001130482, intron 12 of 12) L1ME2|LINE|L1 89825 NM_001114636 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 158.5-77 chr4 90711707 90712270 + 0.5 NA intron (NM_207491, intron 6 of 7) L1PA11|LINE|L1 476957 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 197.75-5 chr1 162037964 162038650 + 0.5 NA Intergenic L2|LINE|L2 -13842 NM_015441 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 193.75-2 chr1 188209564 188210130 + 0.5 NA Intergenic Intergenic 766219 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 157.25-62 chr3 113469898 113470444 + 0.5 NA intron (NM_001331078, intron 7 of 17) MLT1D-int|LTR|ERVL-MaLR -28657 NM_018338 55779 Hs.584936 NM_018338 ENSG00000206530 CFAP44 SPGF20|WDR52 cilia and flagella associated protein 44 protein-coding 173.5-85 chr7 117077573 117078038 + 0.5 NA intron (NR_109980, intron 2 of 4) intron (NR_109980, intron 2 of 4) 12976 NR_109980 93654 Hs.628891 NR_002331 ENSG00000226367 ST7-AS2 ST7AS2|ST7OT2 ST7 antisense RNA 2 ncRNA 230.5-13 chr17 52003958 52004423 + 0.5 NA intron (NM_001082533, intron 3 of 9) intron (NM_001082533, intron 3 of 9) 154524 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 162.75-61 chr5 54030016 54030500 + 0.5 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) -78659 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 211.25-45 chr8 115400434 115401218 + 0.5 NA Intergenic Intergenic 267187 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 198.5-59 chr9 104290607 104291236 + 0.5 NA Intergenic L1MA4|LINE|L1 20692 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 224-7 chr10 66848044 66848925 + 0.5 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -77552 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 157-87 chr7 16089922 16090355 + 0.5 NA non-coding (NR_160656, exon 8 of 8) non-coding (NR_160656, exon 8 of 8) -120348 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 167-66 chr5 24564947 24565381 + 0.5 NA intron (NM_001362460, intron 2 of 9) intron (NM_001362460, intron 2 of 9) 79814 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 192.25-51 chr5 37544966 37545533 + 0.5 NA intron (NM_001345998, intron 9 of 17) intron (NM_001345998, intron 9 of 17) 165931 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 176.75-50 chr3 6917827 6918462 + 0.5 NA intron (NM_000844, intron 1 of 9) MIRc|SINE|MIR -24127 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 147.25-10 chr1 169747150 169747729 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -13360 NM_000450 6401 Hs.82848 NM_000450 ENSG00000007908 SELE CD62E|ELAM|ELAM1|ESEL|LECAM2 selectin E protein-coding 164.25-95 chrX 87419475 87419967 + 0.5 NA Intergenic L1PREC2|LINE|L1 -98081 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 245.5-37 chr8 121196197 121197078 + 0.5 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR -384591 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 199.25-24 chr17 32770563 32771080 + 0.5 NA intron (NM_015194, intron 6 of 21) intron (NM_015194, intron 6 of 21) 106303 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 165.25-34 chr21 26287826 26288345 + 0.5 NA Intergenic Intergenic -105550 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 174-40 chr3 138515011 138515445 + 0.5 NA intron (NM_001320599, intron 11 of 17) Tigger17a|DNA|TcMar-Tigger 76728 NM_001320600 80321 Hs.531962 NM_024491 ENSG00000114107 CEP70 BITE centrosomal protein 70 protein-coding 155.25-27 chr14 66195122 66195738 + 0.5 NA Intergenic LTR27B|LTR|ERV1 -290941 NR_110307 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 175.5-32 chr15 86364731 86365082 + 0.5 NA intron (NM_152336, intron 17 of 24) intron (NM_152336, intron 17 of 24) -47938 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 221.25-32 chr8 119346898 119347467 + 0.5 NA Intergenic L1MC1|LINE|L1 22011 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 243.25-10 chr2 57822765 57823492 + 0.5 NA Intergenic L1MC1|LINE|L1 -84523 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 198-8 chr14 58366881 58367510 + 0.5 NA intron (NM_002892, intron 23 of 23) intron (NM_002892, intron 23 of 23) -28735 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 184.25-27 chr18 80152790 80153367 + 0.5 NA intron (NR_028340, intron 1 of 2) AluY|SINE|Alu 5154 NR_028339 100130522 Hs.352602 NM_001145731 ENSG00000267270 PARD6G-AS1 - PARD6G antisense RNA 1 ncRNA 169.5-20 chr11 30490474 30491057 + 0.5 NA intron (NM_001584, intron 3 of 5) intron (NM_001584, intron 3 of 5) 89728 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 183-47 chr7 31989428 31989934 + 0.5 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 80726 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 158.5-51 chr2 171716241 171716695 + 0.5 NA intron (NM_001271787, intron 5 of 15) intron (NM_001271787, intron 5 of 15) 28713 NM_001320884 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 173-6 chr1 74902699 74903289 + 0.5 NA Intergenic L1ME1|LINE|L1 -169586 NM_001130043 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 153.25-21 chr11 24770268 24770730 + 0.5 NA intron (NM_001252010, intron 5 of 9) intron (NM_001252010, intron 5 of 9) 273446 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 230.75-18 chr18 35434774 35435511 + 0.5 NA Intergenic L1M4a1|LINE|L1 -57805 NM_001322291 252884 Hs.351005 NM_145756 ENSG00000186496 ZNF396 ZSCAN14 zinc finger protein 396 protein-coding 204.25-41 chr5 114976029 114976831 + 0.5 NA Intergenic Intergenic 193478 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 177-5 chr10 44360539 44361210 + 0.5 NA Intergenic Intergenic 24223 NM_001033886 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 159-43 chr2 207950752 207951339 + 0.5 NA intron (NM_001080475, intron 3 of 7) intron (NM_001080475, intron 3 of 7) 74482 NM_001080475 389072 Hs.159188 NM_001080475 ENSG00000178385 PLEKHM3 DAPR|PLEKHM1L pleckstrin homology domain containing M3 protein-coding 236.5-5 chr11 97344202 97344699 + 0.5 NA Intergenic Intergenic 836025 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 166.75-78 chr6 93292920 93293585 + 0.5 NA intron (NM_004440, intron 5 of 16) intron (NM_004440, intron 5 of 16) 126307 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 194.25-40 chr5 129832310 129832979 + 0.5 NA Intergenic L1MEg1|LINE|L1 -71821 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 189.75-82 chr9 115604352 115604810 + 0.5 NA Intergenic L2c|LINE|L2 139658 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 204-2 chr1 41640423 41641080 + 0.5 NA intron (NM_001127714, intron 1 of 7) MIRb|SINE|MIR -156068 NR_126098 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 149.75-56 chr3 97495659 97496112 + 0.5 NA intron (NM_001080448, intron 10 of 17) L3|LINE|CR1 56278 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 165.25-44 chr4 39546398 39546830 + 0.5 NA 3' UTR (NM_001317897, exon 5 of 5) 3' UTR (NM_001317897, exon 5 of 5) 18775 NR_047679 100885776 Hs.640769 NR_047679 ENSG00000249348 UGDH-AS1 - UGDH antisense RNA 1 ncRNA 225.5-23 chr2 155166389 155167176 + 0.5 NA Intergenic Intergenic 468087 NM_002239 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 157.75-67 chr3 96948893 96949408 + 0.5 NA intron (NM_001080448, intron 2 of 17) intron (NM_001080448, intron 2 of 17) 134556 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 157-29 chr13 72939284 72939836 + 0.5 NA intron (NR_146206, intron 14 of 16) L1MB5|LINE|L1 -115416 NM_001286818 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 182.75-44 chr3 170962595 170963161 + 0.5 NA Intergenic Intergenic -54241 NM_020390 56648 Hs.164144 NM_020390 ENSG00000163577 EIF5A2 EIF-5A2|eIF5AII eukaryotic translation initiation factor 5A2 protein-coding 167.5-67 chr4 85519291 85519754 + 0.5 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 44372 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 275.75-14 chr5 65889989 65890869 + 0.5 NA Intergenic L1MC5a|LINE|L1 -36125 NM_001006600 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 146.5-107 chr8 135812322 135812905 + 0.5 NA Intergenic Intergenic 355157 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 195.5-49 chr4 67609339 67610097 + 0.5 NA Intergenic L1ME3B|LINE|L1 50991 NM_012108 26228 Hs.435579 NM_012108 ENSG00000035720 STAP1 BRDG1|STAP-1 signal transducing adaptor family member 1 protein-coding 145.75-70 chr3 12774512 12775007 + 0.5 NA Intergenic MIRb|SINE|MIR -5302 NM_001284406 55287 Hs.475502 NM_018306 ENSG00000088726 TMEM40 - transmembrane protein 40 protein-coding 187-23 chr2 209092037 209092561 + 0.5 NA Intergenic L1PBa|LINE|L1 -331748 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 160.5-7 chr1 169211700 169212113 + 0.5 NA intron (NR_104229, intron 10 of 12) intron (NR_104229, intron 10 of 12) 105216 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 196.25-14 chr13 54979409 54980174 + 0.5 NA Intergenic Intergenic -194663 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 176.5-16 chr12 127645601 127646049 + 0.5 NA Intergenic L1PB4|LINE|L1 -9358 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 159-33 chr2 60239624 60240212 + 0.5 NA Intergenic HSMAR2|DNA|TcMar-Mariner 143118 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 187 chr1 204906977 204907563 + 0.5 NA intron (NM_001160332, intron 1 of 27) L1ME1|LINE|L1 -36956 NM_001160331 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 164.75-23 chr15 85415901 85416315 + 0.5 NA intron (NM_007200, intron 1 of 36) intron (NM_007200, intron 1 of 36) 35505 NM_007200 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 174.25-66 chr7 107928730 107929389 + 0.5 NA intron (NM_002291, intron 31 of 33) intron (NM_002291, intron 31 of 33) 37876 NM_000108 1738 Hs.131711 NM_000108 ENSG00000091140 DLD DLDD|DLDH|E3|GCSL|LAD|PHE3 dihydrolipoamide dehydrogenase protein-coding 176.75-82 chr7 15021935 15022427 + 0.5 NA Intergenic Intergenic -47323 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 173.75-20 chr12 102367221 102367795 + 0.5 NA Intergenic Intergenic 111042 NM_001111284 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 182.25-18 chr2 15931489 15931934 + 0.5 NA intron (NR_125783, intron 2 of 2) intron (NR_125783, intron 2 of 2) -8839 NM_001293231 4613 Hs.25960 NM_005378 ENSG00000134323 MYCN MODED|N-myc|NMYC|ODED|bHLHe37 MYCN proto-oncogene, bHLH transcription factor protein-coding 162.75-31 chr16 47404993 47405442 + 0.5 NA intron (NM_030790, intron 6 of 17) intron (NM_030790, intron 6 of 17) 55846 NM_030790 81533 Hs.42217 NM_030790 ENSG00000129636 ITFG1 2310047C21Rik|CDA08|LNKN-1|TIP integrin alpha FG-GAP repeat containing 1 protein-coding 149.25-41 chr18 76096597 76097004 + 0.5 NA Intergenic AluY|SINE|Alu -26198 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 162.25-43 chr20 3337617 3338061 + 0.5 NA intron (NM_001009984, intron 10 of 36) L1MCa|LINE|L1 69823 NM_001009984 25943 Hs.516853 NM_001009984 ENSG00000088854 C20orf194 - chromosome 20 open reading frame 194 protein-coding 153-35 chr2 73409020 73409425 + 0.5 NA intron (NM_015120, intron 2 of 22) intron (NM_015120, intron 2 of 22) 23464 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 197.75-69 chr9 28140244 28140832 + 0.5 NA intron (NM_152570, intron 5 of 6) L2c|LINE|L2 -566672 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 165-51 chr21 28800981 28801465 + 0.5 NA Intergenic L1ME4b|LINE|L1 84144 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 158.25-45 chr16 71172367 71172957 + 0.5 NA intron (NM_017558, intron 5 of 19) intron (NM_017558, intron 5 of 19) 58060 NM_001270974 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 211.5-23 chr2 13331164 13331728 + 0.5 NA Intergenic Intergenic -324433 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 176.5-10 chr11 37150417 37151017 + 0.5 NA Intergenic Intergenic -552438 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 164.5-27 chr17 67972957 67973449 + 0.5 NA intron (NM_182641, intron 26 of 27) AluY|SINE|Alu 20403 NM_181656 284018 Hs.90790 NM_181655 ENSG00000186665 C17orf58 - chromosome 17 open reading frame 58 protein-coding 214.25-34 chr7 31854058 31854767 + 0.5 NA intron (NM_001191059, intron 8 of 18) intron (NM_001191059, intron 8 of 18) 167197 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 172.25-72 chr8 105509625 105510169 + 0.5 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 190354 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 150-34 chr18 58225853 58226329 + 0.5 NA intron (NM_001144966, intron 1 of 29) intron (NM_001144966, intron 1 of 29) 4520 NM_001144966 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 176.75-7 chr1 199412831 199413305 + 0.5 NA Intergenic L1ME3|LINE|L1 264470 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 165.25-43 chr4 38924202 38924749 + 0.5 NA intron (NM_001350633, intron 7 of 12) intron (NM_001350633, intron 7 of 12) 56443 NR_030300 693159 NR_030300 ENSG00000207944 MIR574 MIR574-3p|MIRN574|hsa-mir-574|mir-574 microRNA 574 ncRNA 147-93 chr5 160464686 160465249 + 0.5 NA Intergenic ORSL-2b|DNA|hAT-Tip100 -3284 NR_132748 107075116 Hs.735831 NR_132748 ENSG00000253522 MIR3142HG - MIR3142 host gene ncRNA 149.75-8 chr1 213521363 213521809 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -403163 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 146.25-31 chr15 87367091 87367465 + 0.5 NA Intergenic MIR|SINE|MIR -209651 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 145.75-20 chr11 102773260 102773616 + 0.5 NA intron (NM_002425, intron 7 of 9) intron (NM_002425, intron 7 of 9) 7190 NM_002425 4319 Hs.2258 NM_002425 ENSG00000166670 MMP10 SL-2|STMY2 matrix metallopeptidase 10 protein-coding 148-30 chr14 73440653 73441180 + 0.5 NA intron (NM_001005743, intron 1 of 12) FLAM_C|SINE|Alu 17664 NM_003744 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 217.5-30 chr4 103110657 103111435 + 0.5 NA intron (NM_001813, intron 46 of 48) intron (NM_001813, intron 46 of 48) -11212 NM_020139 56898 Hs.124696 NM_020139 ENSG00000164039 BDH2 DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308 3-hydroxybutyrate dehydrogenase 2 protein-coding 167.5-65 chr4 40181470 40181905 + 0.5 NA Intergenic AluSx|SINE|Alu -9393 NM_001278368 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 165.25-45 chr4 40055014 40055561 + 0.5 NA intron (NR_027277, intron 1 of 2) intron (NR_027277, intron 1 of 2) -1563 NM_018177 55728 Hs.391463 NM_018177 ENSG00000078177 N4BP2 B3BP NEDD4 binding protein 2 protein-coding 181.5-4 chr1 194376901 194377461 + 0.5 NA Intergenic Intergenic 1072436 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 146.25-16 chr10 83631079 83631629 + 0.5 NA Intergenic L1MB7|LINE|L1 45735 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 223.5-32 chr5 13442049 13442562 + 0.5 NA Intergenic Intergenic -409419 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 182.75-3 chr1 116149516 116150038 + 0.5 NA Intergenic Intergenic 38022 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 164.5-16 chr14 46151431 46151823 + 0.5 NA intron (NR_102702, intron 1 of 3) L1PA11|LINE|L1 87468 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 164.75-95 chr9 72426194 72426712 + 0.5 NA Intergenic Intergenic -61245 NM_006007 7763 Hs.406096 NM_006007 ENSG00000107372 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger AN1-type containing 5 protein-coding 162.25-79 chr5 147114063 147114472 + 0.5 NA Intergenic Intergenic -32747 NM_001271900 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 165-37 chr19 52596753 52597155 + 0.5 NA non-coding (NR_023311, exon 1 of 3) non-coding (NR_023311, exon 1 of 3) 270 NR_023311 7696 Hs.373648 NM_003438 ZNF137P ZNF137|pHZ-30 zinc finger protein 137, pseudogene pseudo 175.5-65 chr3 175420300 175420906 + 0.5 NA intron (NM_207015, intron 5 of 13) intron (NM_207015, intron 5 of 13) 51063 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 222.75-8 chr11 85930794 85931335 + 0.5 NA Intergenic LTR22|LTR|ERVK 75963 NM_173556 220047 Hs.567774 NM_173556 ENSG00000150676 CCDC83 CT148|HSD9|KP-CoT-23 coiled-coil domain containing 83 protein-coding 175.75-8 chr11 96130555 96131013 + 0.5 NA intron (NM_032427, intron 1 of 4) L3|LINE|CR1 -206577 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 164.75-52 chr3 81590665 81591166 + 0.5 NA intron (NM_000158, intron 9 of 15) intron (NM_000158, intron 9 of 15) 170730 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 167-96 chr9 99474408 99474855 + 0.5 NA Intergenic Intergenic -99374 NR_102270 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 201.25-47 chr8 35446653 35447327 + 0.5 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) -97402 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 169.5-39 chr18 27982901 27983364 + 0.5 NA intron (NM_001308176, intron 12 of 14) intron (NM_001308176, intron 12 of 14) 53509 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 172.75-13 chr11 90563661 90564312 + 0.5 NA intron (NR_104190, intron 2 of 6) L1PA16|LINE|L1 -8129 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 156.25-38 chr2 54454089 54454649 + 0.5 NA Intergenic Intergenic -1958 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 146.5-58 chr2 178098613 178099079 + 0.5 NA intron (NM_001077197, intron 2 of 20) intron (NM_001077197, intron 2 of 20) 9493 NM_001077197 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 146.75-85 chr4 176330905 176331406 + 0.5 NA 3' UTR (NM_021928, exon 5 of 5) 3' UTR (NM_021928, exon 5 of 5) 11189 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 161.25-30 chr18 2264821 2265361 + 0.5 NA Intergenic AluSz|SINE|Alu 306414 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 161.75-69 chr4 110847590 110848193 + 0.5 NA Intergenic Intergenic 12756 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 183.75-64 chr4 30636429 30636988 + 0.5 NA Intergenic L2a|LINE|L2 -83661 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 161-57 chr3 132923387 132924014 + 0.5 NA Intergenic MER5A1|DNA|hAT-Charlie -114588 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 174.75-2 chr1 63866561 63867190 + 0.5 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 92858 NM_001083592 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 151.75-105 chr8 71040927 71041259 + 0.5 NA Intergenic Intergenic 315613 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 159.75-74 chr4 125358620 125359230 + 0.5 NA intron (NM_001291303, intron 1 of 16) intron (NM_001291303, intron 1 of 16) 42513 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 151.75-106 chr8 98898574 98899105 + 0.5 NA intron (NM_001256312, intron 1 of 12) intron (NM_001256312, intron 1 of 12) 43771 NM_001256312 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 181.5-25 chr14 70267731 70268317 + 0.5 NA Intergenic L1ME3E|LINE|L1 -20223 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 163.75-33 chr2 193783897 193784383 + 0.5 NA Intergenic L1MC1|LINE|L1 -560129 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 168-40 chr2 185537179 185537674 + 0.5 NA Intergenic Intergenic 201293 NR_110216 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 150.75-75 chr5 43777687 43778014 + 0.5 NA Intergenic L1MA3|LINE|L1 -174620 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 181-45 chr7 69000497 69000954 + 0.5 NA Intergenic Intergenic 596899 NR_148926 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 181.25-60 chr8 132539212 132539763 + 0.5 NA Intergenic L2c|LINE|L2 21992 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 214-10 chr14 65640926 65641464 + 0.5 NA intron (NM_004480, intron 5 of 9) L1ME1|LINE|L1 170093 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 171.25-28 chr18 66450230 66450902 + 0.5 NA Intergenic ERVL-B4-int|LTR|ERVL 153524 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 154-103 chr8 91719027 91719470 + 0.5 NA Intergenic Intergenic 298432 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 156-66 chr4 61736979 61737502 + 0.5 NA intron (NM_001371343, intron 8 of 23) intron (NM_001371343, intron 8 of 23) 424525 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 180-44 chr3 81098725 81099242 + 0.5 NA Intergenic Intergenic 105115 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 150-32 chr18 225159 225512 + 0.5 NA intron (NM_005131, intron 13 of 20) intron (NM_005131, intron 13 of 20) 42712 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 210.5-14 chr14 59269976 59270479 + 0.5 NA intron (NM_001270520, intron 2 of 24) MSTB1|LTR|ERVL-MaLR 6786 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 184.25-7 chr1 189771217 189771666 + 0.5 NA Intergenic Intergenic 704569 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 149.5-69 chr4 138251199 138251682 + 0.5 NA Intergenic L1ME4b|LINE|L1 -9091 NM_014331 23657 Hs.390594 NM_014331 ENSG00000151012 SLC7A11 CCBR1|xCT solute carrier family 7 member 11 protein-coding 172-25 chr15 26896825 26897271 + 0.5 NA intron (NM_001165037, intron 6 of 10) intron (NM_001165037, intron 6 of 10) 29922 NM_001165037 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 150.25-99 chr7 89396644 89397234 + 0.5 NA Intergenic L2a|LINE|L2 -601202 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 177-22 chr19 14938822 14939324 + 0.5 NA Intergenic L1MD|LINE|L1 -2416 NM_012377 26658 Hs.589620 NM_012377 ENSG00000127529 OR7C2 CIT-HSP-87M17|OR19-18|OR7C3 olfactory receptor family 7 subfamily C member 2 protein-coding 174.5-65 chr5 99791480 99791912 + 0.5 NA Intergenic ERV3-16A3_LTR|LTR|ERVL 257706 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 245.75-11 chr2 53266862 53267465 + 0.5 NA Intergenic HAL1|LINE|L1 -500620 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 191-41 chr5 37042101 37042810 + 0.5 NA intron (NM_015384, intron 34 of 45) intron (NM_015384, intron 34 of 45) 165686 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 197-28 chr3 17495559 17496069 + 0.5 NA intron (NM_001349081, intron 2 of 21) intron (NM_001349081, intron 2 of 21) 204206 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 166.75 chr1 56584231 56584737 + 0.5 NA Intergenic MIRc|SINE|MIR -4921 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 208.5-26 chr18 4058097 4058673 + 0.5 NA intron (NM_001242761, intron 2 of 11) MER50-int|LTR|ERV1 96032 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 151-70 chr4 105252887 105253308 + 0.5 NA intron (NM_001127208, intron 6 of 10) L1MC1|LINE|L1 99784 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 164-71 chr6 128899724 128900217 + 0.5 NA intron (NM_000426, intron 1 of 64) intron (NM_000426, intron 1 of 64) 16829 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 208.5-27 chr19 5924801 5925330 + 0.5 NA intron (NM_003624, intron 10 of 16) intron (NM_003624, intron 10 of 16) 10811 NM_004058 828 Hs.584744 NM_004058 ENSG00000105519 CAPS CAPS1 calcyphosine protein-coding 148.25-81 chr6 162657382 162657949 + 0.5 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -69467 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 173.5-64 chr5 23227742 23228277 + 0.5 NA Intergenic MER70A|LTR|ERVL -279600 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 160.5-103 chr6 126314389 126314954 + 0.5 NA Intergenic LTR78|LTR|ERV1 -25118 NM_001286524 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 181.25-34 chr20 49648892 49649574 + 0.5 NA intron (NM_004776, intron 2 of 8) intron (NM_004776, intron 2 of 8) 64645 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 190-15 chr14 80550610 80551189 + 0.5 NA intron (NM_152446, intron 21 of 24) Charlie2a|DNA|hAT-Charlie -319842 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 214-36 chr9 34197108 34197803 + 0.5 NA intron (NM_001171204, intron 2 of 7) L1M3b|LINE|L1 18412 NM_016525 51271 Hs.268963 NM_016525 ENSG00000165006 UBAP1 NAG20|SPG80|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 172.75-32 chr19 30323727 30324205 + 0.5 NA Intergenic Intergenic -48418 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 160.75-100 chr7 26001797 26002359 + 0.5 NA Intergenic Intergenic -52092 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 146-16 chr12 62121805 62122122 + 0.5 NA intron (NM_178539, intron 1 of 4) L1PREC2|LINE|L1 70876 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 173 chr1 28474893 28475366 + 0.5 NA intron (NM_023923, intron 6 of 12) AluJr|SINE|Alu -30814 NR_036473 8420 Hs.469723 NR_002909 ENSG00000242125 SNHG3 NCRNA00014|RNU17C|RNU17D|U17HG|U17HG-A|U17HG-AB small nucleolar RNA host gene 3 ncRNA 172.75-50 chr5 11727984 11728526 + 0.5 NA intron (NM_001288717, intron 2 of 20) AluSg|SINE|Alu -139189 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 219.25-39 chr5 64206612 64207107 + 0.5 NA intron (NM_001113561, intron 2 of 7) MLT1B|LTR|ERVL-MaLR 41016 NM_001323292 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 200.5-18 chr13 76519341 76519801 + 0.5 NA Intergenic MER51E|LTR|ERV1 366834 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 218.5-5 chr1 163488909 163489644 + 0.5 NA Intergenic Intergenic -66085 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 177.25-79 chrX 93789143 93789712 + 0.5 NA Intergenic Intergenic 115221 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 195.25-18 chr17 77541485 77541977 + 0.5 NA Intergenic AluSz|SINE|Alu -5210 NR_040050 100507351 Hs.514518 NR_040050 LOC100507351 - uncharacterized LOC100507351 ncRNA 164.75-22 chr15 66916657 66917227 + 0.5 NA Intergenic L1MEd|LINE|L1 39573 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 194.25-11 chr15 61339174 61339888 + 0.5 NA Intergenic MER5A1|DNA|hAT-Charlie -110229 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 167.5-83 chr5 158591276 158591814 + 0.5 NA Intergenic Intergenic -181772 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 187.75-38 chr2 210454525 210455090 + 0.5 NA intron (NR_110605, intron 3 of 5) intron (NR_110605, intron 3 of 5) 21898 NM_001136574 10314 Hs.13351 NM_006055 ENSG00000115365 LANCL1 GPR69A|p40 LanC like 1 protein-coding 166.75-94 chr8 117168511 117169131 + 0.5 NA intron (NM_173851, intron 6 of 7) MIR|SINE|MIR 33826 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 151.25-72 chr4 114267985 114268380 + 0.5 NA Intergenic Intergenic -288535 NM_024590 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 160-80 chr7 145705777 145706353 + 0.5 NA Intergenic Charlie2a|DNA|hAT-Charlie -870012 NM_022445 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 182-28 chr2 113718866 113719299 + 0.5 NA intron (NM_001330315, intron 15 of 16) intron (NM_001330315, intron 15 of 16) 2286 NR_039943 100616208 NR_039943 ENSG00000265429 MIR4782 - microRNA 4782 ncRNA 158-47 chr3 6275172 6275647 + 0.5 NA Intergenic MLT2B3|LTR|ERVL 530040 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 181-3 chr1 219113052 219113618 + 0.5 NA intron (NR_038845, intron 3 of 4) L1PA13|LINE|L1 60453 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 187.75-18 chr13 92704569 92705024 + 0.5 NA intron (NR_049776, intron 3 of 3) (TA)n|Simple_repeat|Simple_repeat 15159 NR_049776 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 149.25-118 chr9 23755770 23756251 + 0.5 NA intron (NM_004432, intron 2 of 6) Charlie15b|DNA|hAT-Charlie 65299 NM_001351471 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 162-58 chr4 127480571 127481050 + 0.5 NA Intergenic Intergenic -152147 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 153.25-96 chr5 131066542 131067052 + 0.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR 98459 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 188.25-32 chr3 30073358 30074041 + 0.5 NA Intergenic Intergenic -139543 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 157.75-100 chr6 144678109 144678507 + 0.5 NA intron (NM_007124, intron 50 of 73) intron (NM_007124, intron 50 of 73) 272653 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 174.25-39 chr3 24029043 24029514 + 0.5 NA Intergenic Intergenic 73969 NR_026834 152024 Hs.385606 NR_026834 ENSG00000224074 LINC00691 - long intergenic non-protein coding RNA 691 ncRNA 147-120 chr9 103736655 103737133 + 0.5 NA Intergenic FLAM_A|SINE|Alu -262815 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 185.5-47 chr3 99491344 99491755 + 0.5 NA Intergenic L1MA1|LINE|L1 -147045 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 156.75-87 chr6 144718063 144718572 + 0.5 NA intron (NM_007124, intron 52 of 73) AluJr|SINE|Alu 312662 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 179.75-45 chr5 56875520 56876084 + 0.5 NA intron (NM_005921, intron 10 of 19) intron (NM_005921, intron 10 of 19) -33458 NM_001323022 133383 Hs.85950 NM_153706 ENSG00000155542 SETD9 C5orf35 SET domain containing 9 protein-coding 158.5-94 chr8 65768054 65768496 + 0.5 NA intron (NM_001242318, intron 3 of 12) intron (NM_001242318, intron 3 of 12) 20782 NM_002603 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 189-10 chr11 5541258 5541993 + 0.5 NA Intergenic L1MA7|LINE|L1 3898 NM_001005289 390067 Hs.554540 NM_001005289 ENSG00000181616 OR52H1 OR11-41|OR11-45 olfactory receptor family 52 subfamily H member 1 protein-coding 149.5 chr1 24493462 24493935 + 0.5 NA Intergenic AluJb|SINE|Alu -8646 NM_001251979 11123 Hs.656799 NM_013441 ENSG00000117602 RCAN3 DSCR1L2|MCIP3|RCN3|hRCN3 RCAN family member 3 protein-coding 166-83 chr9 27437898 27438379 + 0.5 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -86176 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 173.75-60 chr6 131516135 131516612 + 0.5 NA Intergenic L1PA15-16|LINE|L1 -56853 NM_001244438 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 148.5-12 chr10 36345437 36345850 + 0.5 NA Intergenic Intergenic 567341 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 215-13 chr2 170984279 170984865 + 0.5 NA Intergenic Intergenic 55319 NM_015530 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 259.25-9 chr4 30792153 30792814 + 0.5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 72114 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 179.5-33 chr18 4609849 4610550 + 0.5 NA Intergenic MIRc|SINE|MIR -154892 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 160.25-44 chr3 29893896 29894460 + 0.5 NA intron (NM_001003792, intron 8 of 13) MLT1A|LTR|ERVL-MaLR 39978 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 190.75-31 chr2 22361172 22361875 + 0.5 NA Intergenic Intergenic -174956 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 150.5-16 chr1 239842698 239843128 + 0.5 NA intron (NM_001347716, intron 7 of 7) L2c|LINE|L2 56959 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 223.5-10 chr11 101152719 101153504 + 0.5 NA intron (NR_073144, intron 4 of 4) L1MA6|LINE|L1 -23298 NM_001271162 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 230-27 chr5 57826963 57827752 + 0.5 NA Intergenic Intergenic 71805 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 209-32 chr3 187569731 187570224 + 0.5 NA Intergenic Intergenic 100417 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 270.25-19 chr8 123760431 123761183 + 0.5 NA Intergenic Intergenic -7632 NM_001317918 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 179.75-2 chr1 163329752 163330412 + 0.5 NA intron (NM_145697, intron 5 of 13) L1MC1|LINE|L1 8128 NM_031423 83540 Hs.651950 NM_031423 ENSG00000143228 NUF2 CDCA1|CT106|NUF2R NUF2 component of NDC80 kinetochore complex protein-coding 201-37 chr6 155459682 155460213 + 0.5 NA Intergenic Intergenic -4108 NM_015718 50508 Hs.247776 NM_015718 ENSG00000074771 NOX3 GP91-3|MOX-2 NADPH oxidase 3 protein-coding 196.25-41 chr3 152044242 152044727 + 0.5 NA Intergenic Intergenic -116309 NR_110203 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 229.5 chr1 56012533 56013256 + 0.5 NA Intergenic L1PREC2|LINE|L1 67807 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 149-100 chr8 99429926 99430436 + 0.5 NA intron (NM_017890, intron 21 of 61) intron (NM_017890, intron 21 of 61) 106549 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 220.75-20 chr2 215973220 215973968 + 0.5 NA intron (NM_018000, intron 2 of 4) intron (NM_018000, intron 2 of 4) 39957 NM_018000 55686 Hs.620391 NM_018000 ENSG00000118242 MREG DSU|WDT2 melanoregulin protein-coding 185-7 chr10 26766235 26766711 + 0.5 NA intron (NM_001012752, intron 5 of 9) intron (NM_001012752, intron 5 of 9) 68772 NM_014317 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 148.75-15 chr10 95947577 95948032 + 0.5 NA intron (NM_001349008, intron 9 of 34) intron (NM_001349008, intron 9 of 34) 39839 NM_001130446 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 217.75-8 chr10 58635328 58636162 + 0.5 NA intron (NM_001080512, intron 2 of 20) intron (NM_001080512, intron 2 of 20) -79270 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 174.25-82 chrX 67167882 67168443 + 0.5 NA Intergenic L1ME4a|LINE|L1 -375859 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 155.25-18 chr11 119735472 119735985 + 0.5 NA intron (NR_120587, intron 2 of 3) intron (NR_120587, intron 2 of 3) 6145 NR_120587 102724301 Hs.637640 NR_120587 ENSG00000254854 LOC102724301 - uncharacterized LOC102724301 ncRNA 164.25-42 chr2 56481549 56482042 + 0.5 NA Intergenic MLT1O|LTR|ERVL-MaLR -296025 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 253.75-9 chr14 59066279 59066979 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -122038 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 225.25-29 chr4 67197171 67197866 + 0.5 NA Intergenic Intergenic 224482 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 164.5-62 chr4 134770047 134770633 + 0.5 NA Intergenic ERVL-B4-int|LTR|ERVL 346472 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 156-58 chr3 173443118 173443698 + 0.5 NA intron (NM_014932, intron 2 of 6) intron (NM_014932, intron 2 of 6) 45664 NM_001365932 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 186.75-56 chr3 113722694 113723086 + 0.5 NA intron (NM_025146, intron 4 of 4) intron (NM_025146, intron 4 of 4) 23359 NM_025146 80218 Hs.372378 NM_025146 ENSG00000121579 NAA50 MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNaa50p N(alpha)-acetyltransferase 50, NatE catalytic subunit protein-coding 172.75-24 chr15 76992637 76993181 + 0.5 NA Intergenic Intergenic -1771 NM_001321137 9051 Hs.129758 NM_003978 ENSG00000140368 PSTPIP1 CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP proline-serine-threonine phosphatase interacting protein 1 protein-coding 179.75-43 chr4 125886546 125887103 + 0.5 NA Intergenic Intergenic 379565 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 164.25-31 chr15 49190275 49190820 + 0.5 NA intron (NM_002044, intron 1 of 9) LTR54|LTR|ERV1 20300 NM_002044 2585 Hs.122006 NM_002044 ENSG00000156958 GALK2 GK2 galactokinase 2 protein-coding 173-77 chr7 70339296 70339724 + 0.5 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) 741035 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 180-16 chr12 121959677 121960228 + 0.5 NA intron (NM_001178003, intron 13 of 17) AluJb|SINE|Alu 41360 NM_144668 144406 Hs.709837 NM_144668 ENSG00000158023 WDR66 CFAP251|CaM-IP4|SPGF33 WD repeat domain 66 protein-coding 184.5-53 chr3 84020014 84020651 + 0.5 NA Intergenic L1M4c|LINE|L1 849243 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 253-11 chr7 33549946 33550876 + 0.5 NA intron (NM_001362679, intron 21 of 21) intron (NM_001362679, intron 21 of 21) -354504 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 185.5-66 chr6 104779244 104779726 + 0.5 NA intron (NR_146790, intron 14 of 23) intron (NR_146790, intron 14 of 23) 80061 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 176.25-56 chr7 111665787 111666478 + 0.5 NA Intergenic Intergenic -103615 NM_001350963 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 149-46 chr2 148878057 148878426 + 0.5 NA intron (NM_004522, intron 1 of 25) L1ME3A|LINE|L1 3014 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 196-32 chr3 110472763 110473425 + 0.5 NA Intergenic MER50|LTR|ERV1 596865 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 182.75 chr1 65174553 65175281 + 0.5 NA intron (NM_001330616, intron 1 of 4) intron (NM_001330616, intron 1 of 4) 25923 NM_001330616 205 Hs.10862 NM_013410 ENSG00000162433 AK4 AK 4|AK3|AK3L1|AK3L2 adenylate kinase 4 protein-coding 162.75-5 chr1 190656609 190657118 + 0.5 NA intron (NR_033922, intron 1 of 4) AluJb|SINE|Alu 31973 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 210.75-36 chr5 99938536 99939053 + 0.5 NA Intergenic Intergenic 404804 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 170.25-60 chr6 47963150 47963639 + 0.5 NA intron (NM_207499, intron 2 of 2) L1MA9|LINE|L1 105295 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 157.25-91 chr7 91798911 91799526 + 0.5 NA Intergenic Intergenic 81484 NM_001301134 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 217.25-45 chr8 140018509 140018989 + 0.5 NA intron (NM_001160372, intron 18 of 22) L1ME2|LINE|L1 81786 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 221.25-28 chr5 75508922 75509509 + 0.5 NA intron (NM_031361, intron 1 of 16) intron (NM_031361, intron 1 of 16) 2414 NM_005713 10087 Hs.270437 NM_005713 ENSG00000113163 CERT1 CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11 ceramide transporter 1 protein-coding 147-118 chr9 26164657 26165123 + 0.5 NA Intergenic LTR1F2|LTR|ERV1 98215 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 174.5-59 chr4 55570341 55570932 + 0.5 NA intron (NM_152401, intron 3 of 5) MIR|SINE|MIR 21609 NM_152401 132954 Hs.223712 NM_152401 ENSG00000163440 PDCL2 GCPHLP phosducin like 2 protein-coding 162.75-21 chr12 89522012 89522492 + 0.5 NA 3' UTR (NM_003774, exon 1 of 1) 3' UTR (NM_003774, exon 1 of 1) 2544 NM_003774 8693 Hs.25130 NM_003774 ENSG00000257594 GALNT4 GALNAC-T4|GALNACT4 polypeptide N-acetylgalactosaminyltransferase 4 protein-coding 175.75-70 chr9 107581748 107582413 + 0.5 NA Intergenic L1M5|LINE|L1 -92311 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 194.75-5 chr10 25269090 25269605 + 0.5 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -93071 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 177.5-49 chr7 42307732 42308364 + 0.5 NA Intergenic L1M2|LINE|L1 -70839 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 196.25-6 chr11 85479083 85479495 + 0.5 NA intron (NM_001142699, intron 3 of 27) MLT1A0|LTR|ERVL-MaLR 147981 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 157.25-64 chr3 178473136 178473546 + 0.5 NA Intergenic Intergenic 54140 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 153.5-43 chr2 13960684 13961072 + 0.5 NA Intergenic Intergenic 440080 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 206.75-27 chr2 169036233 169036885 + 0.5 NA Intergenic Intergenic -5235 NM_003742 8647 Hs.158316 NM_003742 ENSG00000073734 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP binding cassette subfamily B member 11 protein-coding 205-26 chr2 105834176 105834706 + 0.5 NA intron (NM_003581, intron 2 of 4) L1MA5|LINE|L1 -17406 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 156.75-33 chr13 94863078 94863577 + 0.5 NA intron (NR_110754, intron 2 of 4) intron (NR_110754, intron 2 of 4) -96714 NR_047487 100861544 Hs.48706 NR_047487 ENSG00000260962 LINC00557 - long intergenic non-protein coding RNA 557 ncRNA 190.25-43 chr6 129900118 129900684 + 0.5 NA Intergenic L2c|LINE|L2 -39086 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 205.5-26 chr21 18225141 18225627 + 0.5 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) -19449 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 204.5-14 chr14 43239460 43240032 + 0.5 NA Intergenic Intergenic 1267537 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 165.5-22 chr12 40341240 40341787 + 0.5 NA intron (NM_198578, intron 41 of 50) intron (NM_198578, intron 41 of 50) -51881 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 220.5-7 chr12 21662024 21662779 + 0.5 NA Intergenic LTR12C|LTR|ERV1 -4546 NM_001315537 3945 Hs.446149 NM_002300 ENSG00000111716 LDHB HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5 lactate dehydrogenase B protein-coding 183-56 chr8 130631025 130631483 + 0.5 NA Intergenic L3|LINE|CR1 -187580 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 227.75-32 chr7 105172780 105173366 + 0.5 NA intron (NM_182692, intron 3 of 15) intron (NM_182692, intron 3 of 15) 96004 NM_001350745 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 181-23 chr2 122440506 122441038 + 0.5 NA Intergenic L1ME3A|LINE|L1 632709 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 247.75-8 chr14 42690624 42691422 + 0.5 NA Intergenic Intergenic 1084167 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 159.25-47 chr3 19524707 19525043 + 0.5 NA intron (NM_144633, intron 15 of 15) LTR33|LTR|ERVL -209944 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 160.75-4 chr1 76940723 76941251 + 0.5 NA intron (NM_001320274, intron 2 of 2) intron (NM_001320274, intron 2 of 2) 73507 NM_001320273 81849 Hs.149201 NM_030965 ENSG00000117069 ST6GALNAC5 SIAT7-E|SIAT7E|ST6GalNAcV ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 198.5-15 chr12 26699883 26700444 + 0.5 NA intron (NM_002223, intron 9 of 56) L2c|LINE|L2 133031 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 152.75-82 chr6 40089562 40090005 + 0.5 NA Intergenic Intergenic -155321 NM_001358529 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 175.75-64 chr7 48365496 48366124 + 0.5 NA intron (NM_152701, intron 31 of 61) L1MA4|LINE|L1 194352 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 180-59 chr6 93122880 93123446 + 0.5 NA Intergenic Intergenic 296396 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 189-46 chr4 76427821 76428378 + 0.5 NA Intergenic MLT2B2|LTR|ERVL -7130 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 159.75-104 chr9 87113127 87113448 + 0.5 NA Intergenic L1M5|LINE|L1 -28062 NR_036691 494127 Hs.626316 NR_036691 LOC494127 - NFYC pseudogene pseudo 148-67 chr3 167076536 167076979 + 0.5 NA Intergenic Intergenic 178074 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 200.75-20 chr16 19269143 19269614 + 0.5 NA Intergenic MSTB|LTR|ERVL-MaLR -16353 NM_001256720 728276 Hs.632180 NM_001256720 ENSG00000261210 CLEC19A - C-type lectin domain containing 19A protein-coding 163.5-57 chr2 99631598 99632154 + 0.5 NA intron (NM_001025108, intron 12 of 23) L1MB3|LINE|L1 -141859 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 226.25-4 chr10 85247139 85247732 + 0.5 NA Intergenic MLT1G3|LTR|ERVL-MaLR -48497 NR_120667 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 208.5-54 chr5 157144833 157145535 + 0.5 NA Intergenic L1ME4c|LINE|L1 -2319 NM_004270 9443 Hs.279902 NM_004270 ENSG00000155868 MED7 ARC34|CRSP33|CRSP9 mediator complex subunit 7 protein-coding 149-60 chr3 1519471 1519906 + 0.5 NA Intergenic Intergenic 426664 NM_001349350 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 146.75-18 chr11 22938203 22938671 + 0.5 NA Intergenic MLT1J1|LTR|ERVL-MaLR -77963 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 162.25-88 chr7 96507004 96507622 + 0.5 NA intron (NR_163953, intron 2 of 5) intron (NR_163953, intron 2 of 5) -3790 NM_001201451 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 145.75-17 chr11 55072934 55073438 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -188969 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 171.75-84 chr8 49444869 49445389 + 0.5 NA Intergenic AluJo|SINE|Alu 67051 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 147.25-44 chr2 18679606 18679975 + 0.5 NA Intergenic MIRc|SINE|MIR -90210 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 188.75-17 chr12 105685811 105686311 + 0.5 NA Intergenic Intergenic -18142 NR_110108 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 281.25-10 chr20 58177915 58178864 + 0.5 NA Intergenic Intergenic 27487 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 219-15 chr3 115611257 115611909 + 0.5 NA Intergenic Arthur1B|DNA|hAT-Tip100 -11927 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 179.5-81 chr8 122158473 122158964 + 0.5 NA Intergenic Intergenic 409926 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 150-91 chr8 124223209 124223758 + 0.5 NA intron (NR_125420, intron 1 of 2) intron (NR_125420, intron 1 of 2) 23915 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 197.75-30 chr18 46575204 46575661 + 0.5 NA intron (NM_144612, intron 14 of 39) MLT1C|LTR|ERVL-MaLR -16120 NM_001145472 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 168.25-72 chr7 4033033 4033476 + 0.5 NA intron (NM_152744, intron 17 of 44) L1MC5a|LINE|L1 -96431 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 155.25 chr1 72041474 72041927 + 0.5 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) -204688 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 149-38 chr2 34544360 34544849 + 0.5 NA Intergenic L1PA8|LINE|L1 -132953 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 191.75-48 chr5 81800065 81800562 + 0.5 NA Intergenic Intergenic -49060 NM_001256735 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 151.75-36 chr17 59107614 59108148 + 0.5 NA Intergenic Intergenic -1001 NM_001353084 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 205.75-47 chr5 79677725 79678382 + 0.5 NA intron (NM_001349553, intron 14 of 16) intron (NM_001349553, intron 14 of 16) -11783 NM_153610 202333 Hs.482625 NM_153610 ENSG00000164309 CMYA5 C5orf10|SPRYD2|TRIM76 cardiomyopathy associated 5 protein-coding 217.5-14 chr14 47705195 47705913 + 0.5 NA Intergenic LOR1-int|LTR|ERV1 -30600 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 154.75-77 chr4 114800218 114800737 + 0.5 NA Intergenic Intergenic 143718 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 147.25-86 chr6 96672608 96672933 + 0.5 NA Intergenic Intergenic 109645 NM_001322467 9457 Hs.632608 NM_020482 ENSG00000112214 FHL5 1700027G07Rik|ACT|FHL-5|dJ393D12.2 four and a half LIM domains 5 protein-coding 153.5-14 chr10 82575696 82576025 + 0.5 NA intron (NR_163253, intron 3 of 10) L2a|LINE|L2 -342940 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 165.75-27 chr12 34649638 34650251 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 627448 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 225.25 chr1 15685817 15686429 + 0.5 NA intron (NM_015164, intron 1 of 19) intron (NM_015164, intron 1 of 19) 1803 NM_015164 23207 Hs.646775 NM_015164 ENSG00000116786 PLEKHM2 SKIP pleckstrin homology and RUN domain containing M2 protein-coding 163.5-43 chr17 12662279 12662798 + 0.5 NA Intergenic AluSx|SINE|Alu -3352 NM_001146312 93649 Hs.462257 NM_153604 ENSG00000141052 MYOCD MYCD myocardin protein-coding 169.75-48 chr3 29684119 29684612 + 0.5 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 249791 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 168.75-57 chr2 213988296 213988746 + 0.5 NA intron (NR_047660, intron 11 of 14) L1MD|LINE|L1 230454 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 146.75-86 chr5 20287989 20288447 + 0.5 NA intron (NM_001349556, intron 1 of 13) intron (NM_001349556, intron 1 of 13) -17333 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 175-50 chr7 83123463 83123927 + 0.5 NA intron (NM_033026, intron 3 of 24) L1MA3|LINE|L1 39189 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 202.75-12 chr11 108780980 108781490 + 0.5 NA intron (NM_004398, intron 13 of 17) L1PA16|LINE|L1 116166 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 163.75-13 chr11 37484871 37485460 + 0.5 NA Intergenic THE1A|LTR|ERVL-MaLR -453436 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 194.25-45 chr8 19587769 19588473 + 0.5 NA intron (NM_001354480, intron 2 of 10) AluSq2|SINE|Alu 14424 NR_148901 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 255.5-30 chr4 135623926 135624913 + 0.5 NA Intergenic L1PA11|LINE|L1 263674 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 170-22 chr16 51460775 51461417 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -301423 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 162.75-79 chr7 52652496 52652959 + 0.5 NA Intergenic Intergenic -382906 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 167.5-42 chr2 100551187 100551614 + 0.5 NA Intergenic Intergenic -11593 NM_024065 79031 Hs.469459 NM_024065 ENSG00000115539 PDCL3 HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1 phosducin like 3 protein-coding 147-83 chr4 185445880 185446296 + 0.5 NA intron (NM_001145411, intron 5 of 5) AluSp|SINE|Alu 16754 NM_001346007 441054 Hs.549398 NM_001114357 ENSG00000205129 C4orf47 - chromosome 4 open reading frame 47 protein-coding 151.25-50 chr2 240824279 240824679 + 0.5 NA Intergenic MER45B|DNA|hAT-Tip100 -4171 NM_004321 547 Hs.516802 NM_004321 ENSG00000130294 KIF1A ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104 kinesin family member 1A protein-coding 180-68 chr8 75682090 75682654 + 0.5 NA Intergenic MER91A|DNA|hAT-Tip100 142404 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 191.75-43 chr4 42350012 42350483 + 0.5 NA intron (NR_134668, intron 1 of 1) FLAM_C|SINE|Alu 41021 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 160.5-27 chr13 62917952 62918330 + 0.5 NA Intergenic Intergenic -110782 NR_120403 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 196.75-43 chr5 119906866 119907293 + 0.5 NA Intergenic LTR54B|LTR|ERV1 277520 NM_182761 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 160.5-96 chr5 94320942 94321466 + 0.5 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -209505 NM_001163417 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 158.25-46 chr17 70302572 70303107 + 0.5 NA Intergenic L1MCc|LINE|L1 133304 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 206 chr1 79312052 79312592 + 0.5 NA Intergenic Intergenic -305592 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 171.25-6 chr10 4461656 4462077 + 0.5 NA Intergenic Intergenic 55397 NR_108056 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 161-43 chr2 11477146 11477766 + 0.5 NA Intergenic Intergenic -11279 NM_001278277 1876 Hs.603093 NM_198256 ENSG00000169016 E2F6 E2F-6 E2F transcription factor 6 protein-coding 158.75 chr1 61276841 61277237 + 0.5 NA intron (NM_001134673, intron 2 of 10) intron (NM_001134673, intron 2 of 10) -23521 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 196.5-62 chr9 27583109 27583763 + 0.5 NA Intergenic L2c|LINE|L2 -9570 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 190.25-66 chrX 70673808 70674502 + 0.5 NA intron (NM_001003811, intron 16 of 30) L1PA14|LINE|L1 172140 NR_145758 109617015 NR_145758 ENSG00000280704 SNORD3E - small nucleolar RNA, C/D box 3E snoRNA 179.5-88 chrX 76968536 76968939 + 0.5 NA intron (NR_110403, intron 1 of 3) intron (NR_110403, intron 1 of 3) 36764 NR_029905 442899 NR_029905 ENSG00000207995 MIR325 MIRN325|hsa-mir-325 microRNA 325 ncRNA 183.75-88 chr7 37883044 37883472 + 0.5 NA intron (NM_016616, intron 12 of 17) intron (NM_016616, intron 12 of 17) 33559 NM_003014 6424 Hs.658169 NM_003014 ENSG00000106483 SFRP4 FRP-4|FRPHE|FRZB-2|PYL|sFRP-4 secreted frizzled related protein 4 protein-coding 167-98 chrX 98516854 98517283 + 0.5 NA Intergenic Intergenic -952533 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 209.75-6 chr11 29273828 29274550 + 0.5 NA Intergenic MLT1G|LTR|ERVL-MaLR -320224 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 150 chr1 49174109 49174576 + 0.5 NA intron (NM_001323575, intron 4 of 12) L2a|LINE|L2 -83069 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 149-104 chr9 80336059 80336541 + 0.5 NA Intergenic L1MC1|LINE|L1 361277 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 153-29 chr17 60452750 60453077 + 0.5 NA intron (NM_006380, intron 11 of 12) AluJo|SINE|Alu 30424 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 235.5-30 chr6 56713786 56714470 + 0.5 NA intron (NM_001144770, intron 3 of 94) intron (NM_001144770, intron 3 of 94) -71239 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 151.25-58 chr3 42489103 42489589 + 0.5 NA promoter-TSS (NM_001251882) promoter-TSS (NM_001251882) 47 NM_001251882 7433 Hs.348500 NM_004624 ENSG00000114812 VIPR1 HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R vasoactive intestinal peptide receptor 1 protein-coding 158.25-52 chr2 53541120 53541645 + 0.5 NA Intergenic Intergenic -226401 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 202.5-29 chr2 64058772 64059340 + 0.5 NA Intergenic AluY|SINE|Alu -39628 NM_001005739 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 185.5-37 chr2 104009721 104010127 + 0.5 NA Intergenic L1ME3A|LINE|L1 398408 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 196.5-50 chr6 163433057 163433527 + 0.5 NA intron (NM_206853, intron 1 of 6) intron (NM_206853, intron 1 of 6) 18574 NM_206853 9444 Hs.510324 NM_006775 ENSG00000112531 QKI Hqk|QK|QK1|QK3|hqkI QKI, KH domain containing RNA binding protein-coding 158.25-103 chr7 51874359 51874985 + 0.5 NA Intergenic MIR|SINE|MIR -481416 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 148.5-41 chr2 55359655 55360166 + 0.5 NA intron (NM_001254943, intron 7 of 33) intron (NM_001254943, intron 7 of 33) 59946 NM_001135597 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL coiled-coil domain containing 88A protein-coding 183.25-53 chr4 58718708 58719303 + 0.5 NA Intergenic Intergenic -182677 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 171-4 chr1 166817498 166817884 + 0.5 NA Intergenic Intergenic -21784 NM_017542 57645 Hs.432752 NM_017542 ENSG00000143157 POGK BASS2|KRBOX2|LST003 pogo transposable element derived with KRAB domain protein-coding 208.5-8 chr11 73867028 73867848 + 0.5 NA Intergenic L1ME2z|LINE|L1 -9261 NM_001267806 80227 Hs.525017 NM_025155 ENSG00000175575 PAAF1 PAAF|Rpn14|WDR71 proteasomal ATPase associated factor 1 protein-coding 146.25-80 chr5 128545226 128545660 + 0.5 NA Intergenic Intergenic -7198 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 170.5-64 chr6 150780745 150781249 + 0.5 NA intron (NM_001329803, intron 3 of 13) AluSx|SINE|Alu 59898 NM_001329806 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 165-79 chr7 8028444 8029046 + 0.5 NA intron (NM_138426, intron 3 of 7) L1MA2|LINE|L1 59949 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 146.25-94 chr8 64314864 64315331 + 0.5 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 53461 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 189.5-7 chr10 36234093 36234739 + 0.5 NA Intergenic L1MB1|LINE|L1 456114 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 175.5-84 chr7 1408136 1408685 + 0.5 NA Intergenic Intergenic 51060 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 150.75-44 chr2 195162351 195162921 + 0.5 NA Intergenic LTR33A_|LTR|ERVL 432041 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 225.5-3 chr1 118945419 118945950 + 0.5 NA intron (NM_152380, intron 1 of 7) intron (NM_152380, intron 1 of 7) 42659 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 165.5-49 chr2 127499473 127499978 + 0.5 NA intron (NM_017969, intron 5 of 13) intron (NM_017969, intron 5 of 13) 26764 NM_017969 55677 Hs.469879 NM_017969 ENSG00000163166 IWS1 - interacts with SUPT6H, CTD assembly factor 1 protein-coding 172-20 chr13 106815993 106816616 + 0.5 NA Intergenic Intergenic 162424 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 206.25-33 chr4 124140528 124141302 + 0.5 NA Intergenic L1M1|LINE|L1 366651 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 181.25-65 chr9 131855622 131856329 + 0.5 NA Intergenic Intergenic -116031 NM_001304275 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 174.5-68 chr5 164967305 164967918 + 0.5 NA Intergenic Intergenic 497332 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 146-54 chr3 112482596 112483125 + 0.5 NA intron (NM_001085357, intron 1 of 3) intron (NM_001085357, intron 1 of 3) 16612 NM_001085357 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 186.5-2 chr1 38180547 38181069 + 0.5 NA Intergenic LTR33A_|LTR|ERVL 33959 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 164-17 chr14 97134988 97135369 + 0.5 NA Intergenic Intergenic -19679 NR_146554 105370648 NR_146554 ENSG00000259110 LINC02304 - long intergenic non-protein coding RNA 2304 ncRNA 164.5-69 chr5 79021311 79021756 + 0.5 NA non-coding (NR_104003, exon 10 of 10) non-coding (NR_104003, exon 10 of 10) -35575 NM_198709 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 151.25-30 chr15 82973598 82974096 + 0.5 NA Intergenic AluSx|SINE|Alu -12363 NM_031452 83640 Hs.80624 NM_031452 ENSG00000169612 RAMAC C15orf18|FAM103A1|HsT19360|RAM|RAMMET RNA guanine-7 methyltransferase activating subunit protein-coding 175.25-54 chr5 106641383 106641789 + 0.5 NA Intergenic Intergenic 369428 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 148.75-37 chr16 82477409 82477929 + 0.5 NA Intergenic Intergenic -149300 NM_001220489 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 177.75-46 chr3 86700784 86701397 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 219147 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 192.5-42 chr4 32346813 32347390 + 0.5 NA Intergenic L1MA9|LINE|L1 -3937 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 160.5-15 chr1 248153879 248154437 + 0.5 NA Intergenic Intergenic 9010 NM_001004690 127059 Hs.553580 NM_001004690 ENSG00000162727 OR2M5 OR2M5P olfactory receptor family 2 subfamily M member 5 protein-coding 212-7 chr11 54970933 54971398 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 264333 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 174.5-32 chr17 44710051 44710693 + 0.5 NA intron (NM_145663, intron 2 of 13) L1MEh|LINE|L1 1707 NR_148206 80174 Hs.369998 NM_025104 ENSG00000161692 DBF4B ASKL1|CHIFB|DRF1|ZDBF1B DBF4 zinc finger B protein-coding 197.75-28 chr18 22354111 22354626 + 0.5 NA Intergenic L1PB4|LINE|L1 63547 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 157.5-116 chr9 124830880 124831378 + 0.5 NA Intergenic MIR|SINE|MIR -22288 NM_001276374 401551 Hs.343383 NM_001045476 ENSG00000136918 WDR38 - WD repeat domain 38 protein-coding 165-27 chr14 60123565 60124092 + 0.5 NA intron (NM_001330177, intron 8 of 10) intron (NM_001330177, intron 8 of 10) 31905 NM_001330177 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 159-50 chr3 30003606 30004141 + 0.5 NA 3' UTR (NM_001177711, exon 14 of 14) 3' UTR (NM_001177711, exon 14 of 14) -69717 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 217.25-5 chr1 194198882 194199702 + 0.5 NA Intergenic Intergenic 894547 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 185.25-20 chr14 33649109 33649757 + 0.5 NA intron (NM_001165893, intron 4 of 10) intron (NM_001165893, intron 4 of 10) -59504 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 183.5-34 chr2 179666249 179666895 + 0.5 NA intron (NR_148056, intron 3 of 9) MIR3|SINE|MIR -6378 NM_001352812 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 153.5-76 chr4 152787218 152787631 + 0.5 NA intron (NM_001025595, intron 1 of 8) Tigger4|DNA|TcMar-Tigger 7470 NM_001025595 27236 Hs.416089 NM_014447 ENSG00000164144 ARFIP1 HSU52521 ADP ribosylation factor interacting protein 1 protein-coding 195.5-32 chr2 216444581 216445291 + 0.5 NA intron (NM_001127207, intron 10 of 17) intron (NM_001127207, intron 10 of 17) 32171 NM_001127207 50485 Hs.516674 NM_014140 ENSG00000138375 SMARCAL1 HARP|HHARP SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 protein-coding 181.25-9 chr11 64902670 64903104 + 0.5 NA promoter-TSS (NR_106807) promoter-TSS (NR_106807) -432 NR_106807 102466727 NR_106807 ENSG00000274314 MIR6749 hsa-mir-6749 microRNA 6749 ncRNA 242.25-25 chr9 136089409 136090174 + 0.5 NA intron (NM_144653, intron 1 of 5) intron (NM_144653, intron 1 of 5) 5498 NM_144653 138151 Hs.112895 NM_144653 ENSG00000148411 NACC2 BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB NACC family member 2 protein-coding 154.5-7 chr1 113146586 113147057 + 0.5 NA Intergenic Intergenic 59432 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 261.5-7 chr16 18789050 18789722 + 0.5 NA intron (NM_001030009, intron 1 of 4) intron (NM_001030009, intron 1 of 4) 948 NM_001019 6210 Hs.370504 NM_001019 ENSG00000134419 RPS15A DBA20|S15a ribosomal protein S15a protein-coding 210.5-15 chr14 61552474 61553018 + 0.5 NA Intergenic MIR|SINE|MIR 17448 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 155.5-35 chr15 46869455 46869949 + 0.5 NA Intergenic Intergenic -314387 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 152.5-106 chr8 13709614 13710015 + 0.5 NA Intergenic L1M1|LINE|L1 80124 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 161-82 chr7 98319044 98319461 + 0.5 NA intron (NM_018842, intron 5 of 13) intron (NM_018842, intron 5 of 13) 37566 NM_015379 25798 Hs.567438 NM_015379 ENSG00000164713 BRI3 I3 brain protein I3 protein-coding 255.25-20 chr5 16374750 16375508 + 0.5 NA intron (NR_104625, intron 8 of 8) intron (NR_104625, intron 8 of 8) 65973 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 173.75-37 chr2 178564148 178564638 + 0.5 NA exon (NM_133432, exon 155 of 192) exon (NM_133432, exon 155 of 192) 41202 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 179.25-12 chr10 106489403 106489966 + 0.5 NA Intergenic Intergenic 349519 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 241.25-20 chr5 32903492 32904117 + 0.5 NA Intergenic L1ME3|LINE|L1 -43639 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 174.25-63 chr7 55326282 55326785 + 0.5 NA Intergenic Intergenic -38915 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 244-19 chr3 50961049 50961788 + 0.5 NA intron (NM_004947, intron 5 of 52) L2a|LINE|L2 286338 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 162.5-43 chr2 105367609 105367991 + 0.5 NA intron (NM_001318898, intron 3 of 5) intron (NM_001318898, intron 3 of 5) 30260 NM_001286537 79074 Hs.549577 NM_024093 ENSG00000135974 C2orf49 asw chromosome 2 open reading frame 49 protein-coding 176-25 chr18 44861930 44862365 + 0.5 NA intron (NM_001130110, intron 2 of 3) intron (NM_001130110, intron 2 of 3) 108019 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA 206.25-18 chr2 41325088 41325715 + 0.5 NA Intergenic MLT1A|LTR|ERVL-MaLR -552154 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 190.5 chr1 38890564 38891253 + 0.5 NA intron (NM_001304746, intron 6 of 7) AluJb|SINE|Alu -9282 NR_037636 100527950 Hs.591506 NR_037633 GJA9-MYCBP Cx58|Cx59|GJA10|GJA9 GJA9-MYCBP readthrough ncRNA 170.75-68 chr8 62380498 62381046 + 0.5 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 131918 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 213.5-44 chr8 122638579 122639343 + 0.5 NA Intergenic Intergenic 55145 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 185-6 chr1 208687180 208687824 + 0.5 NA Intergenic Intergenic -41186 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 152-52 chr3 82220164 82220562 + 0.5 NA intron (NR_147146, intron 3 of 8) L1PA16|LINE|L1 234221 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 161-13 chr10 85369229 85369771 + 0.5 NA Intergenic L1PA13|LINE|L1 63272 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 205-20 chr17 61035365 61036117 + 0.5 NA intron (NM_001330413, intron 18 of 25) MER44B|DNA|TcMar-Tigger 331963 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 172-51 chr3 82024134 82024609 + 0.5 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 38229 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 162.5-37 chr19 632456 633025 + 0.5 NA intron (NM_005035, intron 2 of 20) CpG 797 NM_005035 5442 Hs.254113 NM_005035 ENSG00000099821 POLRMT APOLMT|MTRNAP|MTRPOL|h-mtRPOL RNA polymerase mitochondrial protein-coding 180.25-58 chr5 80894380 80894812 + 0.5 NA Intergenic HERV4_I-int|LTR|ERV1 -65767 NM_006909 5924 Hs.162129 NM_006909 ENSG00000113319 RASGRF2 GRF2|RAS-GRF2 Ras protein specific guanine nucleotide releasing factor 2 protein-coding 160.25-66 chr6 146380904 146381401 + 0.5 NA intron (NM_001278065, intron 6 of 9) L1MA1|LINE|L1 -162681 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 159.25-4 chr1 170258665 170259236 + 0.5 NA Intergenic Intergenic 25258 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 242.25-17 chr6 118147681 118148512 + 0.5 NA intron (NM_001029858, intron 1 of 7) intron (NM_001029858, intron 1 of 7) 62193 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 150.25-66 chr3 120643521 120643893 + 0.5 NA intron (NM_000187, intron 10 of 13) (TTA)n|Simple_repeat|Simple_repeat 38532 NM_000187 3081 Hs.368254 NM_000187 ENSG00000113924 HGD AKU|HGO homogentisate 1,2-dioxygenase protein-coding 159.75-48 chr2 51720591 51721228 + 0.5 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) -649739 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 162.75-46 chr21 23485133 23485688 + 0.5 NA Intergenic Intergenic -100575 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 150.5-61 chr2 72807194 72807638 + 0.5 NA intron (NR_135774, intron 1 of 19) L1PA16|LINE|L1 18617 NM_001321730 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 152.25-12 chr10 21031383 21031973 + 0.5 NA intron (NM_001173484, intron 2 of 6) intron (NM_001173484, intron 2 of 6) -134076 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 170.75-13 chr12 99341459 99341969 + 0.5 NA intron (NM_152788, intron 12 of 25) intron (NM_152788, intron 12 of 25) -186624 NM_001352190 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 202.25-9 chr11 24129152 24129768 + 0.5 NA Intergenic L1PB4|LINE|L1 -367593 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 151.25-38 chr2 49760026 49760600 + 0.5 NA Intergenic Intergenic 213890 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 179.25-19 chr11 77681728 77682165 + 0.5 NA intron (NM_016578, intron 11 of 15) Tigger9b|DNA|TcMar-Tigger -44140 NM_001311199 1207 Hs.430733 NM_001293 ENSG00000074201 CLNS1A CLCI|CLNS1B|ICln chloride nucleotide-sensitive channel 1A protein-coding 179.25-38 chr19 30804408 30804878 + 0.5 NA Intergenic MER41B|LTR|ERV1 -362867 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 162.75-68 chr6 56623272 56623848 + 0.5 NA intron (NM_001723, intron 22 of 23) intron (NM_001723, intron 22 of 23) 19329 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 175-11 chr12 118802335 118802824 + 0.5 NA Intergenic L1MB7|LINE|L1 30957 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 160.75-38 chr15 57575538 57575957 + 0.5 NA Intergenic Intergenic -16157 NR_104371 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 187.25-45 chr4 72475501 72476163 + 0.5 NA intron (NM_014243, intron 3 of 21) L1MD1|LINE|L1 93389 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 152.75-33 chr14 84798999 84799353 + 0.5 NA Intergenic Intergenic -472756 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 205.5-39 chr5 147059108 147059763 + 0.5 NA intron (NM_181677, intron 2 of 10) intron (NM_181677, intron 2 of 10) -3298 NM_181676 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 152.75-30 chr14 68725544 68725902 + 0.5 NA Intergenic MIRc|SINE|MIR 68191 NM_001244698 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 146.5-22 chr13 66495634 66496065 + 0.5 NA intron (NM_001318373, intron 3 of 3) MIR|SINE|MIR 277599 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 197-40 chr6 154801164 154801906 + 0.5 NA intron (NM_014892, intron 6 of 19) intron (NM_014892, intron 6 of 19) -51825 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 148-45 chr2 18929909 18930389 + 0.5 NA Intergenic MER63A|DNA|hAT-Blackjack 96822 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 161-22 chr12 32566409 32566899 + 0.5 NA intron (NM_001370297, intron 2 of 14) intron (NM_001370297, intron 2 of 14) 32361 NM_001304480 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 172.25-49 chr4 33298608 33299183 + 0.5 NA Intergenic Intergenic 740998 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 155.25-91 chr8 92508298 92508759 + 0.5 NA Intergenic Intergenic 146966 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 268.75-5 chr13 113657793 113658404 + 0.5 NA promoter-TSS (NM_000705) promoter-TSS (NM_000705) 100 NM_000705 496 Hs.434202 NM_000705 ENSG00000186009 ATP4B ATP6B ATPase H+/K+ transporting subunit beta protein-coding 188.75-31 chr2 53473381 53474045 + 0.5 NA Intergenic Intergenic -294070 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 167.25-36 chr2 103537733 103538133 + 0.5 NA Intergenic AluJb|SINE|Alu -553504 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 171.5-94 chr7 51934551 51935131 + 0.5 NA Intergenic L1MA8|LINE|L1 -541585 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 171.5-56 chr21 19614908 19615476 + 0.5 NA Intergenic L1MEg2|LINE|L1 284563 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 168-46 chr3 20873787 20874146 + 0.5 NA Intergenic L1PA4|LINE|L1 531498 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 190.5-63 chr8 85208480 85209054 + 0.5 NA intron (NM_001083588, intron 5 of 7) intron (NM_001083588, intron 5 of 7) 11607 NM_001099673 401466 Hs.443072 NM_001099670 ENSG00000176731 RBIS C8orf59 ribosomal biogenesis factor protein-coding 164.25-90 chr8 131921467 131921860 + 0.5 NA intron (NM_001323557, intron 1 of 22) intron (NM_001323557, intron 1 of 22) 4890 NM_001323557 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 245.25-24 chr8 28163970 28164653 + 0.5 NA intron (NM_018091, intron 14 of 14) intron (NM_018091, intron 14 of 14) 71172 NM_018091 55140 Hs.491336 NM_018091 ENSG00000134014 ELP3 KAT9 elongator acetyltransferase complex subunit 3 protein-coding 149.75-75 chr5 82022576 82023080 + 0.5 NA intron (NM_031482, intron 2 of 7) MIRb|SINE|MIR 50805 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 193-30 chr22 29809547 29810117 + 0.5 NA intron (NM_001369943, intron 6 of 17) intron (NM_001369943, intron 6 of 17) 28442 NM_001369940 84164 Hs.731754 NM_032204 ENSG00000100325 ASCC2 ASC1p100|p100 activating signal cointegrator 1 complex subunit 2 protein-coding 171.5-67 chr3 142621180 142621557 + 0.5 NA intron (NM_001145319, intron 1 of 15) intron (NM_001145319, intron 1 of 15) -2056 NM_002670 5357 Hs.203637 NM_002670 ENSG00000120756 PLS1 - plastin 1 protein-coding 265.5-26 chr9 9498766 9499599 + 0.5 NA intron (NM_002839, intron 8 of 45) MIRc|SINE|MIR -300210 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 151-36 chr2 35132367 35132789 + 0.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR -338827 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 154-92 chr6 73796107 73796524 + 0.5 NA intron (NM_001159588, intron 22 of 31) L2a|LINE|L2 100112 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 174-9 chr10 36864681 36865195 + 0.5 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -260919 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 185.25-52 chr3 3214840 3215244 + 0.5 NA Intergenic Intergenic -35325 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 156.5-79 chr4 105107480 105107997 + 0.5 NA Intergenic MamRep1527|LTR|LTR -38137 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 197.5-49 chr5 22911159 22911913 + 0.5 NA Intergenic Intergenic -58192 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 153.5-2 chr1 65854213 65854736 + 0.5 NA intron (NM_002600, intron 1 of 16) L1MEc|LINE|L1 -58771 NM_001297441 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 228.25-17 chr20 12914720 12915549 + 0.5 NA intron (NR_109868, intron 6 of 11) intron (NR_109868, intron 6 of 11) 21829 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 155.75-17 chr11 27367477 27367897 + 0.5 NA 3' UTR (NM_001346432, exon 17 of 17) 3' UTR (NM_001346432, exon 17 of 17) -4439 NM_080654 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 L15|NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 168.25-75 chr8 4027701 4028232 + 0.5 NA intron (NM_033225, intron 4 of 69) intron (NM_033225, intron 4 of 69) 966948 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 183.75-90 chr8 68341796 68342411 + 0.5 NA intron (NR_146187, intron 1 of 13) L1MA7|LINE|L1 -10612 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 181-31 chr3 24795309 24795946 + 0.5 NA Intergenic Intergenic -33696 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 261.75-16 chr5 21731385 21732270 + 0.5 NA Intergenic Intergenic -152627 NR_132787 106635539 NR_132787 SNORA105A - small nucleolar RNA, H/ACA box 105A snoRNA 271-8 chr4 43401857 43402812 + 0.5 NA Intergenic Intergenic 90209 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 156.75-54 chr2 154600132 154600514 + 0.5 NA Intergenic L1MEd|LINE|L1 -98258 NM_001260508 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 150-44 chr2 191208244 191208727 + 0.5 NA Intergenic L1ME4a|LINE|L1 -36919 NM_001161819 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 208-36 chr7 135577545 135578169 + 0.5 NA exon (NM_015135, exon 6 of 43) exon (NM_015135, exon 6 of 43) 19940 NM_015135 23165 Hs.743250 NM_015135 ENSG00000155561 NUP205 C7orf14|NPHS13 nucleoporin 205 protein-coding 149.75-82 chr6 70545848 70546317 + 0.5 NA intron (NM_020819, intron 19 of 20) intron (NM_020819, intron 19 of 20) -20848 NM_145267 135154 Hs.418495 NM_145267 ENSG00000154079 SDHAF4 C6orf57|Sdh8 succinate dehydrogenase complex assembly factor 4 protein-coding 203.5-14 chr12 59266586 59267351 + 0.5 NA Intergenic Intergenic -329061 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 163.25-26 chr13 98349769 98350184 + 0.5 NA intron (NM_005766, intron 3 of 26) intron (NM_005766, intron 3 of 26) 141452 NR_036129 100422881 NR_036129 ENSG00000263399 MIR3170 mir-3170 microRNA 3170 ncRNA 165.25-55 chr5 128255683 128256137 + 0.5 NA Intergenic Intergenic 172144 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 160.5-32 chr14 69001751 69002150 + 0.5 NA Intergenic MER5A1|DNA|hAT-Charlie 22268 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 162.5-63 chr4 52945417 52946008 + 0.5 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 83395 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 163.5-18 chr11 30251747 30252235 + 0.5 NA Intergenic MER76|LTR|ERVL 20977 NM_000510 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 207.25-39 chr3 50076395 50076905 + 0.5 NA intron (NM_001349194, intron 17 of 17) AluSz6|SINE|Alu -12269 NR_036627 10181 Hs.439480 NM_005778 ENSG00000003756 RBM5 G15|H37|LUCA-15|LUCA15|RMB5 RNA binding motif protein 5 protein-coding 145.75-28 chr13 49191847 49192230 + 0.5 NA intron (NM_001079673, intron 19 of 25) MIRb|SINE|MIR -28300 NM_001507 2862 Hs.248126 NM_001507 ENSG00000102539 MLNR GPR38|MTLR1 motilin receptor protein-coding 173-72 chr6 164362099 164362679 + 0.5 NA Intergenic Intergenic 459674 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 155.25-13 chr11 23951666 23952139 + 0.5 NA Intergenic Intergenic -532712 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 162-12 chr11 5614692 5615231 + 0.5 NA intron (NM_001003819, intron 7 of 13) L1MCb|LINE|L1 -4983 NM_001003827 53840 Hs.729048 NM_021616 ENSG00000258659 TRIM34 IFP1|RNF21 tripartite motif containing 34 protein-coding 166.5-56 chr4 31595003 31595540 + 0.5 NA Intergenic Intergenic 88727 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 193.5-24 chr16 8358438 8359101 + 0.5 NA Intergenic MIR1_Amn|SINE|MIR 231069 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 265-15 chr6 56857893 56858647 + 0.5 NA intron (NM_001144769, intron 3 of 96) intron (NM_001144769, intron 3 of 96) -6354 NM_001144770 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 179.25-41 chr2 157735396 157735859 + 0.5 NA TTS (NM_001105) TTS (NM_001105) 103003 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 151.5-50 chr2 59780910 59781486 + 0.5 NA Intergenic Intergenic 563490 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 158-37 chr2 122992232 122992777 + 0.5 NA Intergenic Intergenic 80977 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 203.5-4 chr1 96554060 96554686 + 0.5 NA Intergenic Intergenic -167232 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 161.25-13 chr11 96649930 96650343 + 0.5 NA Intergenic MLT1E2|LTR|ERVL-MaLR 141711 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 185.75-18 chr14 38574375 38574992 + 0.5 NA Intergenic L1PB1|LINE|L1 -307913 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 159.25-6 chr11 3704140 3704613 + 0.5 NA intron (NR_157590, intron 22 of 31) intron (NR_157590, intron 22 of 31) -32992 NM_001303034 57053 Hs.732806 NM_020402 ENSG00000129749 CHRNA10 - cholinergic receptor nicotinic alpha 10 subunit protein-coding 175.75-23 chr16 60114192 60114610 + 0.5 NA Intergenic A-rich|Low_complexity|Low_complexity 245392 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 168.75-6 chr1 229403686 229404194 + 0.5 NA Intergenic Intergenic 30156 NM_001100 58 Hs.1288 NM_001100 ENSG00000143632 ACTA1 ACTA|ASMA|CFTD|CFTD1|CFTDM|MPFD|NEM1|NEM2|NEM3|SHPM actin alpha 1, skeletal muscle protein-coding 183.75 chr1 10387762 10388366 + 0.5 NA Intergenic Intergenic -11000 NM_001304452 5226 Hs.464071 NM_002631 ENSG00000142657 PGD 6PGD phosphogluconate dehydrogenase protein-coding 245.75-12 chr2 188013010 188013824 + 0.5 NA Intergenic Intergenic 274274 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 184.25-51 chr4 114919002 114919542 + 0.5 NA intron (NM_022569, intron 6 of 13) intron (NM_022569, intron 6 of 13) 194348 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 150-89 chr8 113998662 113999256 + 0.5 NA Intergenic Intergenic -562020 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 154.75-32 chr17 61068439 61069045 + 0.5 NA intron (NM_001330413, intron 20 of 25) intron (NM_001330413, intron 20 of 25) 298962 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 196.25-25 chr17 61852548 61853057 + 0.5 NA intron (NM_032043, intron 4 of 19) L1ME3A|LINE|L1 10757 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 232-5 chr1 117981801 117982544 + 0.5 NA intron (NM_206996, intron 42 of 48) intron (NM_206996, intron 42 of 48) 52433 NM_006784 10885 Hs.310809 NM_006784 ENSG00000065183 WDR3 DIP2|UTP12 WD repeat domain 3 protein-coding 199.25-13 chr13 51638783 51639225 + 0.5 NA intron (NM_052950, intron 1 of 11) intron (NM_052950, intron 1 of 11) 54542 NM_052950 115825 Hs.46506 NM_052950 ENSG00000139668 WDFY2 PROF|WDF2|ZFYVE22 WD repeat and FYVE domain containing 2 protein-coding 157.5-17 chr12 54838113 54838682 + 0.5 NA Intergenic L1PB3|LINE|L1 -16119 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 173.5-20 chr13 39429453 39430016 + 0.5 NA intron (NM_005780, intron 2 of 3) L2-3_Crp|LINE|L2 173459 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 179.75-22 chr17 73126486 73127021 + 0.5 NA Intergenic Intergenic -34065 NM_001352692 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 154.5-56 chr3 1510949 1511357 + 0.5 NA Intergenic L2a|LINE|L2 418129 NM_001349350 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 217.25-8 chr10 6104872 6105436 + 0.5 NA intron (NM_032905, intron 4 of 11) intron (NM_032905, intron 4 of 11) 15808 NM_001145547 84991 Hs.498548 NM_032905 ENSG00000134453 RBM17 SPF45 RNA binding motif protein 17 protein-coding 156.75-91 chr7 26086026 26086497 + 0.5 NA Intergenic LTR32|LTR|ERVL -65937 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 205.25-28 chr4 98732349 98732804 + 0.5 NA Intergenic Intergenic 73674 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 211.25-23 chr2 180469322 180470048 + 0.5 NA Intergenic L1MB1|LINE|L1 -222419 NR_104324 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 151.5-82 chr5 110652014 110652394 + 0.5 NA intron (NM_001039763, intron 2 of 13) intron (NM_001039763, intron 2 of 13) 74467 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 151-105 chr8 121268174 121268563 + 0.5 NA Intergenic MER5A|DNA|hAT-Charlie -370978 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 152.5-82 chr4 114475893 114476313 + 0.5 NA Intergenic Intergenic -122299 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 195.5-9 chr11 40761687 40762314 + 0.5 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -468870 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 164.5-73 chr5 112751633 112752091 + 0.5 NA intron (NM_001354904, intron 2 of 15) L1M5|LINE|L1 13977 NM_001354899 324 Hs.158932 NM_000038 ENSG00000134982 APC BTPS2|DP2|DP2.5|DP3|GS|PPP1R46 APC regulator of WNT signaling pathway protein-coding 208-35 chr7 93301480 93302085 + 0.5 NA intron (NM_001257998, intron 17 of 28) L1M4|LINE|L1 69416 NM_017667 55610 Hs.202424 NM_017667 ENSG00000004766 VPS50 CCDC132|VPS54L VPS50 subunit of EARP/GARPII complex protein-coding 173.25-26 chr16 10142967 10143632 + 0.5 NA intron (NM_001134408, intron 2 of 13) MER113A|DNA|hAT-Charlie 38768 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 149.75-109 chrX 38868225 38868744 + 0.5 NA Intergenic Intergenic -64601 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 218.5-43 chr8 114459906 114460512 + 0.5 NA Intergenic L1MD3|LINE|L1 -1023270 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 148.25-4 chr1 163201183 163201646 + 0.5 NA intron (NM_001254748, intron 2 of 5) intron (NM_001254748, intron 2 of 5) 1502 NM_003617 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 146-35 chr18 14119063 14119434 + 0.5 NA intron (NM_145287, intron 2 of 2) L1M3a|LINE|L1 13187 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 193.25-31 chr2 116827953 116828518 + 0.5 NA Intergenic L1MA9|LINE|L1 -986456 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 155-78 chr5 3295906 3296312 + 0.5 NA Intergenic MLT1C|LTR|ERVL-MaLR 118274 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 153.25-20 chr10 117971908 117972373 + 0.5 NA Intergenic AluJb|SINE|Alu -74681 NR_026940 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 148.75-112 chrX 71446571 71447012 + 0.5 NA intron (NR_104394, intron 33 of 39) intron (NR_104394, intron 33 of 39) 45658 NR_002226 27160 Hs.721806 NR_002226 ENSG00000243468 INGX ING1-like|ING2 inhibitor of growth family, X-linked (pseudogene) pseudo 198-35 chr5 116257435 116258141 + 0.5 NA intron (NM_001308080, intron 5 of 6) intron (NM_001308080, intron 5 of 6) 2045 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 160.5-61 chr3 78272916 78273252 + 0.5 NA Intergenic L2c|LINE|L2 -224121 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 180-71 chr8 87835432 87836025 + 0.5 NA Intergenic Intergenic 38287 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 256.75-17 chr3 86337892 86338718 + 0.5 NA Intergenic Intergenic -143638 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 186.25-10 chr12 29237334 29237947 + 0.5 NA intron (NM_001271784, intron 1 of 10) Charlie1a|DNA|hAT-Charlie 13974 NM_001271784 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 168.75-73 chr4 51961374 51961819 + 0.5 NA Intergenic Intergenic 58767 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 250-2 chr1 195159807 195160373 + 0.5 NA Intergenic MER41A|LTR|ERV1 928625 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 190.75-11 chr10 72905349 72906040 + 0.5 NA intron (NR_130125, intron 3 of 7) intron (NR_130125, intron 3 of 7) 11955 NM_152635 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 162.5-51 chr21 28596292 28596760 + 0.5 NA Intergenic Intergenic 57208 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 208.25-20 chr14 67333752 67334479 + 0.5 NA 3' UTR (NM_022474, exon 15 of 15) 3' UTR (NM_022474, exon 15 of 15) 25689 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 177.5-53 chr8 38983508 38983969 + 0.5 NA intron (NM_153692, intron 8 of 8) MER33|DNA|hAT-Charlie 9510 NM_153692 203100 Hs.661014 NM_153692 ENSG00000169495 HTRA4 - HtrA serine peptidase 4 protein-coding 152.75-110 chr9 112642401 112642936 + 0.5 NA intron (NM_001287036, intron 3 of 4) intron (NM_001287036, intron 3 of 4) 75449 NM_001329585 58493 Hs.658575 NM_021218 ENSG00000148153 INIP C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1 INTS3 and NABP interacting protein protein-coding 170.5-43 chr20 63258104 63258633 + 0.5 NA non-coding (NR_024389, exon 1 of 1) non-coding (NR_024389, exon 1 of 1) -3905 NM_152864 128414 Hs.46627 NM_152864 ENSG00000101198 NKAIN4 C20orf58|FAM77A|bA261N11.2 sodium/potassium transporting ATPase interacting 4 protein-coding 151.25-89 chr8 19537296 19537736 + 0.5 NA intron (NM_001354497, intron 1 of 7) MER72B|LTR|ERV1 65029 NR_148901 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 174.5-17 chr10 107952283 107952670 + 0.5 NA intron (NR_125760, intron 4 of 4) intron (NR_125760, intron 4 of 4) 116817 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 181.75-38 chr20 18124256 18124857 + 0.5 NA Intergenic L1MB4|LINE|L1 -13307 NM_001164811 100303755 Hs.488051 NM_001164811 ENSG00000232838 PET117 CSRP2BP PET117 cytochrome c oxidase chaperone protein-coding 176.25-31 chr16 19533492 19534070 + 0.5 NA intron (NM_014711, intron 4 of 14) MER4CL34|LTR|ERV1 9839 NM_001323570 9738 Hs.279912 NM_014711 ENSG00000103540 CCP110 CP110|Cep110 centriolar coiled-coil protein 110 protein-coding 146.5-37 chr17 32720090 32720538 + 0.5 NA intron (NM_015194, intron 15 of 21) MIR|SINE|MIR 156810 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 192.75-17 chr12 129062904 129063536 + 0.5 NA Intergenic Intergenic -46470 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 149.5-104 chrX 122450840 122451169 + 0.5 NA Intergenic A-rich|Low_complexity|Low_complexity -733239 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 148.75-53 chr2 163506618 163507123 + 0.5 NA Intergenic L1MA3|LINE|L1 229138 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 159.5-96 chr8 84242283 84242691 + 0.5 NA intron (NM_001354320, intron 2 of 9) L1PA11|LINE|L1 57821 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 148.25-11 chr10 115393185 115393776 + 0.5 NA intron (NM_207303, intron 19 of 28) intron (NM_207303, intron 19 of 28) 300115 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 147.25-60 chr3 144812835 144813254 + 0.5 NA Intergenic Intergenic 839963 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 188-58 chr9 29103422 29104026 + 0.5 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 108575 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 256.25-12 chr20 38488174 38489044 + 0.5 NA exon (NM_001282918, exon 2 of 30) exon (NM_001282918, exon 2 of 30) 15766 NM_020336 57148 Hs.598850 NM_020336 ENSG00000170471 RALGAPB KIAA1219|RalGAPbeta Ral GTPase activating protein non-catalytic beta subunit protein-coding 153.25-44 chr16 11287799 11288297 + 0.5 NA Intergenic AluY|SINE|Alu -6718 NM_002761 5619 Hs.2909 NM_002761 ENSG00000175646 PRM1 CT94.1|P1 protamine 1 protein-coding 202.25-49 chr6 135810175 135810618 + 0.5 NA Intergenic Intergenic -41305 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 160.5-58 chr22 24753987 24754393 + 0.5 NA non-coding (NR_045648, exon 9 of 22) non-coding (NR_045648, exon 9 of 22) -10311 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 147.25-16 chr10 74818277 74818775 + 0.5 NA Intergenic Intergenic -6729 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 156.75-84 chr6 44526526 44526965 + 0.5 NA Intergenic Intergenic 25136 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 158-92 chr8 89560167 89560793 + 0.5 NA Intergenic MER4D1|LTR|ERV1 197231 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 167.25-7 chr10 43006765 43007273 + 0.5 NA Intergenic L1MD|LINE|L1 9456 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 167.5-4 chr1 66326614 66327262 + 0.5 NA intron (NM_001037340, intron 5 of 14) intron (NM_001037340, intron 5 of 14) -5170 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 178-57 chr6 55362202 55362912 + 0.5 NA intron (NM_207410, intron 6 of 8) intron (NM_207410, intron 6 of 8) 35088 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 153.75-12 chr12 105119362 105119781 + 0.5 NA intron (NM_001293640, intron 7 of 32) intron (NM_001293640, intron 7 of 32) 11840 NM_001293640 23325 Hs.12144 NM_015275 ENSG00000136051 WASHC4 KIAA1033|MRT43|SWIP WASH complex subunit 4 protein-coding 189-3 chr1 201078385 201079111 + 0.5 NA intron (NM_000069, intron 10 of 43) L2c|LINE|L2 33678 NM_000069 779 Hs.1294 NM_000069 ENSG00000081248 CACNA1S CACNL1A3|CCHL1A3|Cav1.1|HOKPP|HOKPP1|MHS5|TTPP1|hypoPP calcium voltage-gated channel subunit alpha1 S protein-coding 208.5-35 chr2 186366178 186366656 + 0.5 NA Intergenic Intergenic -119843 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 215.75-19 chr2 111995740 111996272 + 0.5 NA intron (NM_006343, intron 9 of 18) intron (NM_006343, intron 9 of 18) -59263 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 163.25-13 chr10 64634651 64635068 + 0.5 NA Intergenic L1M5|LINE|L1 -190669 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 168-20 chr13 104083038 104083571 + 0.5 NA Intergenic Intergenic 658104 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 175.5-62 chr3 106377783 106378321 + 0.5 NA Intergenic Intergenic -508651 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 153.75-75 chr6 64287469 64287875 + 0.5 NA intron (NM_001292009, intron 30 of 43) intron (NM_001292009, intron 30 of 43) 480836 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 148.25-39 chr18 66726666 66727233 + 0.5 NA Intergenic MIRb|SINE|MIR -122859 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 188-5 chr1 56715385 56715780 + 0.5 NA TTS (NM_006252) TTS (NM_006252) -70264 NR_135111 101929935 NR_135111 LOC101929935 - uncharacterized LOC101929935 ncRNA 181.5-42 chr2 190162863 190163325 + 0.5 NA intron (NM_001042520, intron 1 of 1) intron (NM_001042520, intron 1 of 1) 12848 NM_001042520 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 212.25-4 chr1 200617043 200617783 + 0.5 NA intron (NM_014875, intron 2 of 29) intron (NM_014875, intron 2 of 29) 1425 NM_001305792 9928 Hs.3104 NM_014875 ENSG00000118193 KIF14 MCPH20|MKS12 kinesin family member 14 protein-coding 179.25-57 chr5 24133179 24133876 + 0.5 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 182179 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 178.5-58 chr7 53042985 53043484 + 0.5 NA Intergenic Intergenic 7601 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 165-93 chr9 79286144 79286550 + 0.5 NA Intergenic MIR|SINE|MIR -140681 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 157.5-91 chr6 73309237 73309716 + 0.5 NA intron (NR_027005, intron 2 of 4) intron (NR_027005, intron 2 of 4) 683 NM_001251874 80759 Hs.433062 NM_030568 ENSG00000135314 KHDC1 C6orf147|C6orf148|Em:AC019205.8|KHDC1L|NDG1|bA257K9.4 KH domain containing 1 protein-coding 193.75-30 chr17 60750758 60751265 + 0.5 NA intron (NM_001330413, intron 6 of 25) intron (NM_001330413, intron 6 of 25) 73160 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 196.5-55 chr7 140737129 140737830 + 0.5 NA intron (NR_148928, intron 17 of 17) L1ME3G|LINE|L1 -40402 NR_024454 100134713 Hs.534141 NR_024454 ENSG00000240889 NDUFB2-AS1 - NDUFB2 antisense RNA 1 ncRNA 210.5-32 chr5 24871645 24872304 + 0.5 NA Intergenic Intergenic -31391 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 208-15 chr2 44247420 44248247 + 0.5 NA Intergenic Intergenic -27647 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 160.5-38 chr15 99461301 99461720 + 0.5 NA Intergenic L1MC3|LINE|L1 -103907 NM_001352617 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 212.5-50 chr7 53343675 53344323 + 0.5 NA Intergenic L2a|LINE|L2 308366 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 155-49 chr20 36615451 36615959 + 0.5 NA intron (NM_175077, intron 5 of 7) L1ME3E|LINE|L1 9926 NR_026562 55969 Hs.584985 NM_018840 ENSG00000101084 RAB5IF C20orf24|PNAS-11|RIP5 RAB5 interacting factor protein-coding 160-16 chr13 28178537 28179004 + 0.5 NA intron (NM_175854, intron 4 of 18) intron (NM_175854, intron 4 of 18) -39596 NR_029383 100288730 Hs.123191 NR_029383 PAN3-AS1 - PAN3 antisense RNA 1 ncRNA 146.75-110 chr7 89892036 89892548 + 0.5 NA intron (NR_110029, intron 2 of 2) L1ME2|LINE|L1 -227108 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 155.25-94 chr8 132356633 132357108 + 0.5 NA intron (NM_004519, intron 1 of 14) L3|LINE|CR1 90392 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 159-8 chr10 21846855 21847323 + 0.5 NA intron (NM_022365, intron 8 of 11) intron (NM_022365, intron 8 of 11) 156641 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 188.75-4 chr1 150141010 150141529 + 0.5 NA intron (NR_103998, intron 13 of 13) intron (NR_103998, intron 13 of 13) -8165 NM_001304722 51177 Hs.438824 NM_016274 ENSG00000023902 PLEKHO1 CKIP-1|CKIP1|JBP|OC120 pleckstrin homology domain containing O1 protein-coding 153-52 chr3 31197631 31198113 + 0.5 NA Intergenic L2c|LINE|L2 -36085 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 166.75-84 chr7 122410339 122410951 + 0.5 NA intron (NM_001363400, intron 20 of 30) MIRc|SINE|MIR -105895 NM_001024613 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 168.75-32 chr17 78010292 78010828 + 0.5 NA intron (NM_018996, intron 2 of 20) intron (NM_018996, intron 2 of 20) 6323 NM_018996 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 161.75-78 chr5 68616111 68616555 + 0.5 NA Intergenic AluY|SINE|Alu 323756 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 170.25-79 chr8 129889527 129890047 + 0.5 NA intron (NM_001353307, intron 4 of 13) Tigger1|DNA|TcMar-Tigger 50024 NM_001353295 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 148.25-63 chr4 61786904 61787350 + 0.5 NA intron (NM_001371343, intron 8 of 23) intron (NM_001371343, intron 8 of 23) 374638 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 151-56 chr22 46630055 46630657 + 0.5 NA intron (NM_015124, intron 2 of 18) L1MB7|LINE|L1 9970 NM_015124 23151 Hs.475150 NM_015124 ENSG00000075240 GRAMD4 DIP GRAM domain containing 4 protein-coding 201.5-40 chr3 96596253 96596919 + 0.5 NA Intergenic MIR|SINE|MIR -218008 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 195.5-12 chr12 46812672 46813267 + 0.5 NA intron (NM_018018, intron 1 of 16) intron (NM_018018, intron 1 of 16) 13028 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 174-47 chr4 182456884 182457465 + 0.5 NA intron (NM_001080477, intron 3 of 27) AluSx|SINE|Alu 213772 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 254.75-10 chr17 39441102 39441808 + 0.5 NA intron (NM_004774, intron 3 of 16) L1MB3|LINE|L1 9808 NM_004774 5469 Hs.643754 NM_004774 ENSG00000125686 MED1 CRSP1|CRSP200|DRIP205|DRIP230|PBP|PPARBP|PPARGBP|RB18A|TRAP220|TRIP2 mediator complex subunit 1 protein-coding 152-42 chr2 158836316 158836830 + 0.5 NA Intergenic AluJo|SINE|Alu 41256 NM_001017920 92196 Hs.59761 NM_001017920 ENSG00000163331 DAPL1 - death associated protein like 1 protein-coding 189.25-4 chr1 218876538 218877103 + 0.5 NA intron (NR_031644, intron 6 of 6) intron (NR_031644, intron 6 of 6) 41691 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 244.25-8 chr14 39104459 39105035 + 0.5 NA TTS (NR_146545) TTS (NR_146545) -1512 NM_006364 10484 Hs.272927 NM_006364 ENSG00000100934 SEC23A CLSD|hSec23A Sec23 homolog A, coat complex II component protein-coding 155.75-27 chr13 37130565 37130941 + 0.5 NA Intergenic Tigger11a|DNA|TcMar-Tigger -25089 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 237.75-13 chr2 77505092 77505719 + 0.5 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 16971 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 149.25-104 chr8 27682550 27682923 + 0.5 NA Intergenic L1ME2|LINE|L1 -18941 NR_037417 100500858 NR_037417 ENSG00000284351 MIR3622A mir-3622a microRNA 3622a ncRNA 179.75-44 chr5 12752568 12753166 + 0.5 NA intron (NR_033383, intron 3 of 3) L1ME1|LINE|L1 85008 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 168.5-45 chr19 36876778 36877206 + 0.5 NA exon (NM_003419, exon 3 of 3) exon (NM_003419, exon 3 of 3) 25341 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 153-67 chr4 87558468 87558901 + 0.5 NA Intergenic L1MD2|LINE|L1 -29181 NM_004684 8404 Hs.62886 NM_004684 ENSG00000152583 SPARCL1 MAST 9|MAST9|PIG33|SC1 SPARC like 1 protein-coding 174-24 chr16 61412932 61413584 + 0.5 NA Intergenic Intergenic -357492 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 153-88 chr8 26326072 26326639 + 0.5 NA intron (NM_001177591, intron 2 of 9) L2|LINE|L2 33139 NM_001177591 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 160.25-38 chr2 169519371 169519958 + 0.5 NA intron (NM_006063, intron 4 of 5) AluJr4|SINE|Alu 9962 NM_006063 10324 Hs.50550 NM_006063 ENSG00000239474 KLHL41 KBTBD10|Krp1|SARCOSIN kelch like family member 41 protein-coding 166.5-30 chr16 57891954 57892498 + 0.5 NA intron (NM_001297, intron 31 of 32) Tigger17a|DNA|TcMar-Tigger 78902 NM_001135639 1258 Hs.147062 NM_001297 ENSG00000070729 CNGB1 CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45 cyclic nucleotide gated channel beta 1 protein-coding 185.5-11 chr10 27721909 27722376 + 0.5 NA intron (NM_001242702, intron 5 of 6) intron (NM_001242702, intron 5 of 6) -22473 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 148-96 chrX 117511118 117511470 + 0.5 NA Intergenic Intergenic 462444 NM_033495 90293 Hs.348262 NM_033495 ENSG00000003096 KLHL13 BKLHD2 kelch like family member 13 protein-coding 166.75-96 chr8 125829822 125830345 + 0.5 NA Intergenic L1MA4A|LINE|L1 121114 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 173.5-11 chr10 58786212 58786865 + 0.5 NA intron (NM_001080512, intron 4 of 20) intron (NM_001080512, intron 4 of 20) 71523 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 199.25-21 chr15 94000165 94000720 + 0.5 NA intron (NR_120320, intron 3 of 8) (TATATA)n|Simple_repeat|Simple_repeat 99741 NR_120322 101927129 Hs.652658 NR_120322 ENSG00000258785 LINC01580 - long intergenic non-protein coding RNA 1580 ncRNA 175.25-57 chr6 48499709 48500206 + 0.5 NA Intergenic Intergenic -431268 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 213.5-14 chr12 49826944 49827644 + 0.5 NA intron (NM_001368048, intron 1 of 13) intron (NM_001368048, intron 1 of 13) 1119 NM_001037806 57701 Hs.143067 NM_001037806 ENSG00000167566 NCKAP5L Cep169|FP1193|KIAA1602 NCK associated protein 5 like protein-coding 168.5-87 chr6 46331423 46331984 + 0.5 NA intron (NR_125838, intron 2 of 3) L1MC5|LINE|L1 -5811 NM_005822 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 151.25-60 chr3 109197909 109198507 + 0.5 NA Intergenic L1ME4a|LINE|L1 20043 NR_026767 677779 Hs.618669 NM_001040054 ENSG00000214381 LINC00488 C3orf66 long intergenic non-protein coding RNA 488 ncRNA 222.25-35 chr5 35447661 35448504 + 0.5 NA Intergenic L1PB1|LINE|L1 -169781 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 159.5-76 chr5 45511859 45512408 + 0.5 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 184247 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 147.5-83 chr5 122163792 122164275 + 0.5 NA intron (NM_001195535, intron 1 of 2) MamTip2|DNA|hAT-Tip100 3857 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 167-74 chr5 147732077 147732685 + 0.5 NA intron (NM_001270934, intron 1 of 20) intron (NM_001270934, intron 1 of 20) 50347 NM_001270941 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 158-38 chr2 124841864 124842391 + 0.5 NA intron (NM_130773, intron 19 of 23) intron (NM_130773, intron 19 of 23) 816840 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 164-83 chr8 46544472 46545022 + 0.5 NA Intergenic Intergenic 72896 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 252.5-24 chr6 96995989 96996807 + 0.5 NA intron (NM_001286251, intron 3 of 8) (AAC)n|Simple_repeat|Simple_repeat -13678 NM_001323262 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 193.75-24 chr15 76834108 76834577 + 0.5 NA intron (NR_148227, intron 5 of 32) L1PA15|LINE|L1 27602 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 156.25 chr1 76190212 76190832 + 0.5 NA intron (NM_001349108, intron 1 of 3) intron (NM_001349108, intron 1 of 3) 115776 NM_001349106 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 168.25 chr1 78720137 78720732 + 0.5 NA Intergenic Intergenic 70603 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 209.5-51 chr8 106887227 106887838 + 0.5 NA Intergenic L2a|LINE|L2 -117288 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 179.25-2 chr1 62914128 62914676 + 0.5 NA Intergenic Intergenic 96523 NR_146607 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 151.25-42 chr2 77523797 77524302 + 0.5 NA Intergenic Intergenic -1616 NM_001282924 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 154.25-88 chr8 109904637 109905240 + 0.5 NA Intergenic L1MA8|LINE|L1 70833 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 163-13 chr10 94622199 94622623 + 0.5 NA Intergenic MER4A|LTR|ERV1 -61318 NM_001128925 1562 Hs.511872 NM_000772 ENSG00000108242 CYP2C18 CPCI|CYP2C|CYP2C17|P450-6B/29C|P450IIC17 cytochrome P450 family 2 subfamily C member 18 protein-coding 188-41 chr3 103659770 103660387 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -135962 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 161.5-43 chr19 10538329 10538709 + 0.5 NA Intergenic AluJo|SINE|Alu -5385 NR_104024 84971 Hs.512799 NM_032885 ENSG00000130734 ATG4D APG4-D|APG4D|AUTL4 autophagy related 4D cysteine peptidase protein-coding 155.25-35 chr18 4244834 4245268 + 0.5 NA intron (NM_001242761, intron 1 of 11) MADE2|DNA|TcMar-Mariner -19551 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 296-3 chr17 29862421 29863408 + 0.5 NA intron (NM_001282129, intron 1 of 15) intron (NM_001282129, intron 1 of 15) -66989 NM_001145053 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 162.25-4 chr1 191114802 191115291 + 0.5 NA Intergenic L1PA15|LINE|L1 113452 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 165.25-56 chr5 148200158 148200663 + 0.5 NA Intergenic Intergenic -2384 NM_001195290 404203 Hs.334274 NM_205841 ENSG00000178172 SPINK6 BUSI2|UNQ844 serine peptidase inhibitor, Kazal type 6 protein-coding 212-30 chr5 40266799 40267356 + 0.5 NA Intergenic MLT2A2|LTR|ERVL 214786 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 253-12 chr8 121311769 121312511 + 0.5 NA Intergenic L1MA8|LINE|L1 -327206 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 193.25-27 chr2 66595294 66595833 + 0.5 NA intron (NR_110156, intron 1 of 5) L1MC4|LINE|L1 21533 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 146.25-35 chr17 57476170 57476729 + 0.5 NA intron (NM_001322250, intron 6 of 13) intron (NM_001322250, intron 6 of 13) 47148 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 154.5-59 chr3 84292832 84293285 + 0.5 NA Intergenic Intergenic 576517 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 197.25-52 chr9 28967771 28968339 + 0.5 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) -79100 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 151-44 chr2 124015054 124015449 + 0.5 NA intron (NR_147976, intron 2 of 2) intron (NR_147976, intron 2 of 2) 9923 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 201.75-32 chr5 147758676 147759324 + 0.5 NA intron (NM_001270934, intron 1 of 20) intron (NM_001270934, intron 1 of 20) 23728 NM_001270941 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 197-25 chr20 33533394 33534123 + 0.5 NA intron (NM_001032999, intron 1 of 10) AluSx|SINE|Alu -28607 NM_005093 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 partner transcriptional co-repressor 2 protein-coding 175.25-7 chr10 114951995 114952639 + 0.5 NA intron (NM_139169, intron 3 of 7) AluSz|SINE|Alu 14122 NM_139169 142940 Hs.21187 NM_139169 ENSG00000165832 TRUB1 PUS4 TruB pseudouridine synthase family member 1 protein-coding 183.75-72 chr5 107997229 107997707 + 0.5 NA intron (NM_001163315, intron 7 of 8) intron (NM_001163315, intron 7 of 8) -326531 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 148.75-29 chr14 49119405 49119938 + 0.5 NA Intergenic L1PA4|LINE|L1 466709 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 146.75-125 chr9 68872043 68872591 + 0.5 NA intron (NM_003558, intron 5 of 15) intron (NM_003558, intron 5 of 15) 92252 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 154-75 chr4 92378274 92378850 + 0.5 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 74163 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 146.5-16 chr11 77878481 77878919 + 0.5 NA TTS (NM_033547) TTS (NM_033547) 37562 NM_001363564 28971 Hs.745040 NM_024684 ENSG00000087884 AAMDC C11orf67|CK067|PTD015 adipogenesis associated Mth938 domain containing protein-coding 191.25-32 chr16 75076209 75076652 + 0.5 NA intron (NM_032268, intron 1 of 4) intron (NM_032268, intron 1 of 4) 40342 NM_194436 197257 Hs.380929 NM_153486 ENSG00000166816 LDHD DLACD|DLD lactate dehydrogenase D protein-coding 166.5-95 chr9 76526305 76526695 + 0.5 NA Intergenic Intergenic 25867 NM_001097636 2650 Hs.521568 NM_001490 ENSG00000187210 GCNT1 C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2 glucosaminyl (N-acetyl) transferase 1 protein-coding 181.25-3 chr1 104420169 104420609 + 0.5 NA Intergenic Intergenic 347366 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 172.5-70 chr6 131110272 131110760 + 0.5 NA Intergenic MER58A|DNA|hAT-Charlie -24951 NM_016377 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 175.75-46 chr3 101839044 101839706 + 0.5 NA intron (NM_001005474, intron 2 of 12) intron (NM_001005474, intron 2 of 12) -10139 NM_031419 64332 Hs.319171 NM_031419 ENSG00000144802 NFKBIZ IKBZ|INAP|MAIL NFKB inhibitor zeta protein-coding 152.5-91 chr5 107230845 107231184 + 0.5 NA Intergenic L1MC1|LINE|L1 -220000 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 158.5-67 chr3 46652170 46652613 + 0.5 NA Intergenic L1MCa|LINE|L1 39866 NM_001195442 100132146 Hs.679623 NM_001195442 ENSG00000283473 FAM240A - family with sequence similarity 240 member A protein-coding 154.25-19 chr11 80814977 80815355 + 0.5 NA Intergenic Intergenic -52363 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 186.5-42 chr3 163783936 163784486 + 0.5 NA Intergenic L1PB1|LINE|L1 387345 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 172.25-9 chr11 33285234 33285578 + 0.5 NA intron (NM_001278162, intron 1 of 15) intron (NM_001278162, intron 1 of 15) 27075 NM_001278162 10114 Hs.201918 NM_005734 ENSG00000110422 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 153.25-78 chr3 76659529 76660025 + 0.5 NA Intergenic Intergenic -380322 NM_002942 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 153-87 chr8 18718485 18719067 + 0.5 NA intron (NM_015310, intron 9 of 15) intron (NM_015310, intron 9 of 15) 90091 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 193.25-20 chr14 58246419 58246982 + 0.5 NA intron (NR_038123, intron 1 of 9) L2a|LINE|L2 1857 NM_002788 5684 Hs.558799 NM_002788 ENSG00000100567 PSMA3 HC8|PSC3 proteasome subunit alpha 3 protein-coding 148.75-19 chr11 77160132 77160627 + 0.5 NA intron (NM_001127180, intron 11 of 48) intron (NM_001127180, intron 11 of 48) 32133 NM_000260 4647 Hs.370421 NM_000260 ENSG00000137474 MYO7A DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B myosin VIIA protein-coding 209.25-8 chr12 2330632 2331391 + 0.5 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 61235 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 148.25-66 chr4 168041385 168041961 + 0.5 NA Intergenic Intergenic -50864 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 185-73 chr9 88479067 88479617 + 0.5 NA TTS (NM_006717) TTS (NM_006717) -55759 NM_001161625 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2|RdCVF2L nucleoredoxin like 2 protein-coding 151-79 chr6 9960146 9960544 + 0.5 NA Intergenic Intergenic -444157 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 184.5-27 chr12 97094531 97095104 + 0.5 NA Intergenic Intergenic 187351 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 151.25-18 chr12 52429656 52430195 + 0.5 NA intron (NM_004693, intron 5 of 8) intron (NM_004693, intron 5 of 8) 4446 NM_004693 9119 Hs.697046 NM_004693 ENSG00000170454 KRT75 K6HF|KB18|PFB keratin 75 protein-coding 194.5-41 chr3 163070316 163070847 + 0.5 NA Intergenic Intergenic 232720 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 153.75-89 chr8 126320380 126320701 + 0.5 NA Intergenic Intergenic -4955 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 174-16 chr14 31389770 31390389 + 0.5 NA intron (NM_015473, intron 6 of 35) L2a|LINE|L2 30471 NM_015473 25938 Hs.744979 NM_015473 ENSG00000129493 HEATR5A C14orf125 HEAT repeat containing 5A protein-coding 197-37 chr5 102915763 102916345 + 0.5 NA intron (NR_157231, intron 6 of 14) intron (NR_157231, intron 6 of 14) 50231 NM_000919 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 158-33 chr2 47928960 47929480 + 0.5 NA Intergenic L2c|LINE|L2 -23427 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 191.5-44 chr5 22842330 22843034 + 0.5 NA intron (NM_001364105, intron 1 of 15) intron (NM_001364105, intron 1 of 15) 10662 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 168.25-77 chr8 107608559 107609151 + 0.5 NA Intergenic Intergenic -110937 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 175-45 chr5 133235518 133236177 + 0.5 NA intron (NM_015082, intron 7 of 15) intron (NM_015082, intron 7 of 15) 183834 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 235.25-5 chr14 42443089 42443894 + 0.5 NA Intergenic Intergenic 836635 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 160.25-9 chr10 32481317 32481893 + 0.5 NA intron (NR_109826, intron 9 of 16) L1M4c|LINE|L1 35465 NR_109826 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 145.75-62 chr2 234198623 234199069 + 0.5 NA Intergenic Intergenic 148144 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 201.75-41 chr8 92024905 92025665 + 0.5 NA intron (NM_001198633, intron 1 of 10) intron (NM_001198633, intron 1 of 10) -7605 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 186.25-47 chr5 8623524 8624193 + 0.5 NA Intergenic L1MB7|LINE|L1 162933 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 192.75 chr1 188431624 188432091 + 0.5 NA Intergenic Intergenic 988229 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 165.75-115 chr9 27559940 27560495 + 0.5 NA TTS (NM_145005) TTS (NM_145005) 13264 NM_018325 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 180-15 chr12 90804465 90805075 + 0.5 NA Intergenic L1ME1|LINE|L1 -113253 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 146.75-47 chr2 5304905 5305431 + 0.5 NA Intergenic L1MD1|LINE|L1 385950 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 169.5-47 chr2 80590921 80591361 + 0.5 NA intron (NM_001282599, intron 9 of 11) intron (NM_001282599, intron 9 of 11) 277762 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 171.5-100 chr8 112613174 112613776 + 0.5 NA intron (NM_001363185, intron 20 of 66) intron (NM_001363185, intron 20 of 66) -30018 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 193.25-28 chr2 74744795 74745558 + 0.5 NA Intergenic MIR|SINE|MIR -87479 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 174-25 chr17 43199466 43199986 + 0.5 NA intron (NM_005899, intron 16 of 20) intron (NM_005899, intron 16 of 20) -12149 NM_001291587 113277 Hs.536474 NM_145041 ENSG00000184988 TMEM106A - transmembrane protein 106A protein-coding 326-3 chr5 50928921 50929730 + 0.5 NA Intergenic Intergenic 40862 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 158.25-26 chr11 111263613 111263972 + 0.5 NA intron (NM_198498, intron 2 of 4) MIR|SINE|MIR 18067 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 160-25 chr16 1595122 1595503 + 0.5 NA intron (NM_014714, intron 4 of 30) AluY|SINE|Alu 14785 NR_135176 105371046 Hs.663325 NR_135176 ENSG00000260989 LOC105371046 - uncharacterized LOC105371046 ncRNA 169.25-14 chr15 53387198 53387702 + 0.5 NA Intergenic Intergenic 153402 NR_102336 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 302-7 chr8 136207338 136208352 + 0.5 NA Intergenic L2|LINE|L2 -322953 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 181.75-51 chr4 135365975 135366419 + 0.5 NA Intergenic L1MD2|LINE|L1 -242638 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 229.25 chr1 41688662 41689310 + 0.5 NA intron (NM_001127714, intron 1 of 7) L2c|LINE|L2 -204303 NR_126098 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 211.5-2 chr1 74338884 74339506 + 0.5 NA intron (NM_015978, intron 7 of 24) intron (NM_015978, intron 7 of 24) 103808 NM_015978 51086 Hs.480085 NM_015978 ENSG00000116783 TNNI3K CARK|CCDD TNNI3 interacting kinase protein-coding 164.5-6 chr10 62857497 62858100 + 0.5 NA Intergenic Intergenic -38631 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 181.25-32 chr2 229503481 229504058 + 0.5 NA intron (NM_139072, intron 6 of 12) AluJb|SINE|Alu 210786 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 151.25-106 chr9 98230544 98231002 + 0.5 NA intron (NR_051978, intron 3 of 11) AluSz|SINE|Alu -1556 NR_106913 102465514 NR_106913 ENSG00000278412 MIR6854 hsa-mir-6854 microRNA 6854 ncRNA 175.75-29 chr18 13816304 13816777 + 0.5 NA Intergenic Intergenic -7609 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 237.75-8 chr14 77120754 77121394 + 0.5 NA Intergenic Intergenic 19670 NM_001364172 283576 Hs.525485 NM_174976 ENSG00000177108 ZDHHC22 C14orf59 zinc finger DHHC-type containing 22 protein-coding 171.25-31 chr2 50042496 50042925 + 0.5 NA intron (NM_001330093, intron 21 of 22) L2a|LINE|L2 -68507 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 146.75-26 chr14 25831853 25832290 + 0.5 NA Intergenic Intergenic 721359 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 297-2 chr2 164814883 164815708 + 0.5 NA intron (NM_001278458, intron 2 of 16) AluSz|SINE|Alu -25454 NR_110574 101929633 Hs.570267 NR_110574 LOC101929633 - uncharacterized LOC101929633 ncRNA 179.25-51 chr4 61527740 61528383 + 0.5 NA intron (NM_001371343, intron 4 of 23) MIR|SINE|MIR 325889 NM_001371342 162.5-29 chr15 24590762 24591209 + 0.5 NA Intergenic HERV35I-int|LTR|ERV1 32828 NR_026646 791114 Hs.720900 NR_026646 ENSG00000259905 PWRN1 NCRNA00198 Prader-Willi region non-protein coding RNA 1 ncRNA 230.5-18 chr20 53792587 53793126 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR 82853 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 147.75-63 chr22 35284387 35284800 + 0.5 NA intron (NM_001003681, intron 6 of 10) MER47A|DNA|TcMar-Tigger -14682 NM_001135729 10043 Hs.474705 NM_005488 ENSG00000100284 TOM1 - target of myb1 membrane trafficking protein protein-coding 199.75-38 chr3 109009629 109010254 + 0.5 NA intron (NM_014429, intron 17 of 27) L1M7|LINE|L1 -56062 NM_005459 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 171.75-68 chr6 39755277 39755742 + 0.5 NA Intergenic L1ME1|LINE|L1 -30086 NM_001351503 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 148.75-91 chr6 92433328 92433857 + 0.5 NA Intergenic Intergenic -743164 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 164.25-66 chr4 36599402 36599804 + 0.5 NA intron (NR_149124, intron 2 of 4) L1ME3Cz|LINE|L1 42297 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 155-44 chr2 140346381 140346989 + 0.5 NA intron (NM_018557, intron 77 of 90) intron (NM_018557, intron 77 of 90) 240000 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 226.25-21 chr6 129063029 129063759 + 0.5 NA intron (NM_000426, intron 3 of 64) intron (NM_000426, intron 3 of 64) 180253 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 247.5-33 chr8 10084438 10085015 + 0.5 NA intron (NM_001135670, intron 1 of 4) MIR|SINE|MIR -10925 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 189.25-28 chr2 67983592 67984230 + 0.5 NA Intergenic AluSq2|SINE|Alu 79093 NM_001190265 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 148.5-4 chr1 104311335 104311728 + 0.5 NA Intergenic L2a|LINE|L2 238508 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 184.5-10 chr1 173350402 173351029 + 0.5 NA intron (NR_037845, intron 2 of 2) intron (NR_037845, intron 2 of 2) 110647 NR_125960 101928673 Hs.674889 NR_125960 ENSG00000203739 LOC101928673 - uncharacterized LOC101928673 ncRNA 230.25-27 chr5 40120685 40121592 + 0.5 NA Intergenic LTR27B|LTR|ERV1 68847 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 169-38 chr20 31786814 31787288 + 0.5 NA intron (NM_012112, intron 12 of 17) MIRb|SINE|MIR -32324 NM_033118 85366 Hs.86092 NM_033118 ENSG00000101306 MYLK2 KMLC|MLCK|MLCK2|skMLCK myosin light chain kinase 2 protein-coding 206.75-57 chr9 84413365 84414102 + 0.5 NA Intergenic AluSz|SINE|Alu -45006 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 204.25-7 chr12 62053397 62054170 + 0.5 NA intron (NM_178539, intron 1 of 4) MIR|SINE|MIR 139056 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 161.5-38 chr15 79279401 79279928 + 0.5 NA intron (NR_038997, intron 1 of 1) intron (NR_038997, intron 1 of 1) -3058 NM_001146341 390616 Hs.531231 NM_001146341 ENSG00000235711 ANKRD34C - ankyrin repeat domain 34C protein-coding 180.5-45 chr22 36463849 36464453 + 0.5 NA Intergenic Intergenic 17489 NM_012473 25828 Hs.211929 NM_012473 ENSG00000100348 TXN2 COXPD29|MT-TRX|MTRX|TRX2|TXN thioredoxin 2 protein-coding 200.25-43 chr5 155669672 155670204 + 0.5 NA Intergenic Intergenic 656183 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 261.5-20 chr5 45571616 45572244 + 0.5 NA intron (NM_021072, intron 2 of 7) AluSq2|SINE|Alu 124450 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 172.5-64 chr5 141087448 141087928 + 0.5 NA Intergenic Intergenic -6927 NM_018936 56133 Hs.533023 NM_018936 ENSG00000112852 PCDHB2 PCDH-BETA2 protocadherin beta 2 protein-coding 221-20 chr3 120828727 120829579 + 0.5 NA intron (NR_135570, intron 1 of 1) intron (NR_135570, intron 1 of 1) 7204 NR_135570 101926983 Hs.553055 NR_135570 ENSG00000243593 LINC02049 - long intergenic non-protein coding RNA 2049 ncRNA 183.25-80 chr9 25707563 25708182 + 0.5 NA Intergenic Intergenic -29014 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 149.5-33 chr17 61653618 61654035 + 0.5 NA Intergenic AluSx|SINE|Alu -62607 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 157.75-10 chr1 199397487 199397926 + 0.5 NA Intergenic Intergenic 249108 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 194.25-54 chrX 40692635 40693368 + 0.5 NA intron (NM_004229, intron 13 of 30) intron (NM_004229, intron 13 of 30) -42395 NM_001289773 100873985 Hs.460579 NM_001289773 MED14OS MED14-AS1 MED14 opposite strand protein-coding 215-22 chr3 174117681 174118347 + 0.5 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -197218 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 182-38 chr4 59813982 59814663 + 0.5 NA Intergenic LTR16E2|LTR|ERVL 800749 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 192.75-72 chrX 36208602 36209198 + 0.5 NA intron (NM_001304548, intron 45 of 63) AluSq2|SINE|Alu 231392 NR_110412 101928627 Hs.590831 NR_110412 ENSG00000226484 LOC101928627 - uncharacterized LOC101928627 ncRNA 215.25-46 chr8 80376695 80377227 + 0.5 NA Intergenic Intergenic -108632 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 235-3 chr10 15339406 15339887 + 0.5 NA intron (NM_001010924, intron 1 of 7) L1MC3|LINE|L1 31643 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 162.25-27 chr18 11791456 11792081 + 0.5 NA intron (NM_001369387, intron 4 of 11) intron (NM_001369387, intron 4 of 11) 39683 NM_001369387 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 147.25-84 chr6 87012636 87013141 + 0.5 NA intron (NM_000865, intron 1 of 1) MIR|SINE|MIR 75360 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 160.25-31 chr2 52731676 52732192 + 0.5 NA Intergenic MER5A|DNA|hAT-Charlie -29319 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 154-13 chr10 16092619 16093063 + 0.5 NA Intergenic L1ME2|LINE|L1 -232308 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 164.25-59 chr3 110056823 110057413 + 0.5 NA Intergenic Intergenic 454290 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 153.25-102 chr6 66547650 66548190 + 0.5 NA Intergenic Intergenic 760041 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 161.5-29 chr13 57323515 57323937 + 0.5 NA Intergenic L1PB4|LINE|L1 156529 NM_001130404 729233 Hs.723090 NM_001130404 ENSG00000204918 PRR20B PRR20|PRR20A|PRR20C|PRR20D|PRR20E proline rich 20B protein-coding 169-45 chr3 182516183 182516705 + 0.5 NA Intergenic Intergenic -9320 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 161.75-21 chr16 76525250 76525647 + 0.5 NA intron (NM_001322179, intron 17 of 22) intron (NM_001322179, intron 17 of 22) -109550 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 162.5-55 chr3 50835175 50835581 + 0.5 NA intron (NM_004947, intron 2 of 52) MER41-int|LTR|ERV1 160298 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 163.75-41 chr3 124043150 124043692 + 0.5 NA Intergenic L2|LINE|L2 -51251 NR_133919 54763 Hs.567516 NM_017578 ENSG00000065371 ROPN1 CT91|ODF6|RHPNAP1|ROPN1A|ropporin rhophilin associated tail protein 1 protein-coding 147.5-26 chr14 39649835 39650297 + 0.5 NA Intergenic Intergenic -217566 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 165.75-71 chr4 48701714 48702225 + 0.5 NA intron (NM_015030, intron 2 of 63) intron (NM_015030, intron 2 of 63) 78330 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 146.75-73 chr3 97397771 97398313 + 0.5 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -41565 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 193.25-24 chr19 28929974 28930498 + 0.5 NA Intergenic AluJr4|SINE|Alu -34895 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 207-21 chr2 202249674 202250285 + 0.5 NA Intergenic LTR9B|LTR|ERV1 -11382 NM_003352 7341 Hs.81424 NM_003352 ENSG00000116030 SUMO1 DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1 small ubiquitin like modifier 1 protein-coding 168.75-13 chr10 100948356 100948900 + 0.5 NA intron (NM_018121, intron 15 of 19) AluY|SINE|Alu -23901 NM_001203244 57715 Hs.591923 NM_017893 ENSG00000095539 SEMA4G - semaphorin 4G protein-coding 152.5-83 chr4 145768070 145768599 + 0.5 NA intron (NM_178835, intron 11 of 14) AluSz|SINE|Alu 88130 NM_001080531 646603 NM_001080531 ENSG00000237136 C4orf51 - chromosome 4 open reading frame 51 protein-coding 204.75-25 chr2 81444115 81444880 + 0.5 NA Intergenic Intergenic 22449 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 183.75-36 chr18 2794587 2795095 + 0.5 NA intron (NM_015295, intron 45 of 47) L1ME4a|LINE|L1 -52165 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 232-14 chr15 87387818 87388387 + 0.5 NA Intergenic Intergenic -188827 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 160.75-65 chr2 143376439 143376905 + 0.5 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 247253 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 150.75-7 chr10 33499227 33499594 + 0.5 NA Intergenic Intergenic -164505 NR_045259 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 171-63 chr7 69458986 69459609 + 0.5 NA Intergenic Intergenic 138327 NR_148926 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 224.25-9 chr13 84920218 84920886 + 0.5 NA Intergenic L1MD|LINE|L1 136898 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 153.25-108 chr8 34325960 34326411 + 0.5 NA Intergenic Intergenic -457736 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 155.25-14 chr11 40508487 40508900 + 0.5 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -215563 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 161.25-36 chr2 40592892 40593527 + 0.5 NA Intergenic LTR83|LTR|ERVL -80774 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 156-51 chr3 24624774 24625328 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR -129343 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 219.75-5 chr1 206123758 206124497 + 0.5 NA Intergenic L1MB7|LINE|L1 -6739 NM_000707 553 Hs.1372 NM_000707 ENSG00000198049 AVPR1B AVPR3|V1bR arginine vasopressin receptor 1B protein-coding 173.25-77 chr8 139216192 139216758 + 0.5 NA Intergenic Intergenic -302434 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 176.5-60 chr4 69810042 69810635 + 0.5 NA Intergenic Intergenic -49718 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 168.75-106 chr9 76176672 76177124 + 0.5 NA intron (NR_120409, intron 13 of 19) L1MD|LINE|L1 217528 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 186.25-63 chr8 102335473 102336173 + 0.5 NA intron (NM_001282873, intron 9 of 58) AluSx|SINE|Alu 76866 NM_001282873 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 186.75-23 chr13 36511791 36512354 + 0.5 NA Intergenic Intergenic 79577 NM_003914 8900 Hs.417050 NM_003914 ENSG00000133101 CCNA1 CT146 cyclin A1 protein-coding 146-32 chr17 70221150 70221627 + 0.5 NA Intergenic Intergenic 51853 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 184-7 chr10 72694985 72695553 + 0.5 NA intron (NM_001270680, intron 1 of 7) intron (NM_001270680, intron 1 of 7) 2650 NM_001270680 90550 Hs.591366 NM_138357 ENSG00000156026 MCU C10orf42|CCDC109A|HsMCU mitochondrial calcium uniporter protein-coding 209-28 chr21 15343810 15344402 + 0.5 NA Intergenic Intergenic -279106 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 156.25-10 chr10 130985995 130986417 + 0.5 NA Intergenic Intergenic -23538 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 238.5-37 chr8 88298489 88299380 + 0.5 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 28549 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 152.75-51 chr2 122519568 122520015 + 0.5 NA Intergenic Intergenic 553690 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 188-29 chr2 55119319 55119969 + 0.5 NA intron (NM_001321904, intron 1 of 9) intron (NM_001321904, intron 1 of 9) 18187 NM_001321904 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 149.25-96 chr7 3752011 3752429 + 0.5 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) -377465 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 151-5 chr10 13509063 13509496 + 0.5 NA intron (NM_001370075, intron 1 of 8) Charlie16a|DNA|hAT-Charlie -6303 NM_152751 222389 Hs.498740 NM_152751 ENSG00000165626 BEND7 C10orf30 BEN domain containing 7 protein-coding 179.5-61 chr5 46225947 46226499 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -529843 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 146.5-85 chr5 30327062 30327487 + 0.5 NA Intergenic Intergenic 446714 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 188.75-36 chr22 39668445 39669055 + 0.5 NA intron (NM_001003406, intron 23 of 35) intron (NM_001003406, intron 23 of 35) 97997 NM_021096 8911 Hs.125116 NM_021096 ENSG00000100346 CACNA1I Cav3.3|ca(v)3.3 calcium voltage-gated channel subunit alpha1 I protein-coding 187.25-7 chr1 232481338 232481868 + 0.5 NA intron (NM_020808, intron 4 of 20) intron (NM_020808, intron 4 of 20) 34005 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 152-61 chr4 59664615 59664985 + 0.5 NA Intergenic Intergenic 651227 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 339 chr2 123745085 123746108 + 0.5 NA Intergenic L1MB8|LINE|L1 279578 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 240.5-31 chrX 8974400 8975341 + 0.5 NA Intergenic L1MA7|LINE|L1 59257 NM_205849 171483 Hs.733351 NM_173696 ENSG00000177138 FAM9B TEX39B family with sequence similarity 9 member B protein-coding 188.75-12 chr11 99552590 99553275 + 0.5 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -3213 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 158.75-31 chr15 78020464 78020951 + 0.5 NA intron (NM_144572, intron 6 of 12) intron (NM_144572, intron 6 of 12) -26482 NR_026998 91450 Hs.406766 NR_026998 LOC91450 - uncharacterized LOC91450 ncRNA 253.75-11 chr15 54548579 54549215 + 0.5 NA intron (NM_001329919, intron 26 of 31) L2a|LINE|L2 -507850 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 169.25-25 chr2 76511179 76511770 + 0.5 NA Intergenic L1MA8|LINE|L1 -474491 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 198.75-36 chr3 159489800 159490541 + 0.5 NA intron (NM_001197108, intron 1 of 6) L1MA4A|LINE|L1 207524 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 179.5-25 chr15 42222241 42222820 + 0.5 NA intron (NM_015497, intron 15 of 19) intron (NM_015497, intron 15 of 19) -14226 NM_015289 23339 Hs.88025 NM_015289 ENSG00000166887 VPS39 TLP|VAM6|hVam6p VPS39 subunit of HOPS complex protein-coding 160.25-25 chr16 64469214 64469666 + 0.5 NA Intergenic Intergenic 652623 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 167.75-70 chr5 12170601 12170993 + 0.5 NA Intergenic Intergenic -266351 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 168.75-77 chr4 98060903 98061414 + 0.5 NA intron (NM_174952, intron 5 of 10) L1PA14|LINE|L1 82318 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 152-85 chr6 119268711 119269125 + 0.5 NA intron (NM_005907, intron 5 of 12) intron (NM_005907, intron 5 of 12) 80843 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 155.75-71 chr3 189673422 189674036 + 0.5 NA intron (NM_003722, intron 1 of 13) intron (NM_003722, intron 1 of 13) 42340 NM_001114978 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 172-74 chr6 42803028 42803647 + 0.5 NA intron (NM_001318819, intron 2 of 13) intron (NM_001318819, intron 2 of 13) -17719 NM_015349 23506 Hs.658033 NM_015349 ENSG00000112624 BICRAL GLTSCR1L|KIAA0240 BRD4 interacting chromatin remodeling complex associated protein like protein-coding 150.25-2 chr1 65322790 65323342 + 0.5 NA intron (NM_001256864, intron 1 of 18) intron (NM_001256864, intron 1 of 18) 13523 NM_001256864 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 170.25-72 chr8 30365105 30365633 + 0.5 NA Intergenic MIRc|SINE|MIR -19132 NM_001008712 11030 Hs.334587 NM_006867 ENSG00000157110 RBPMS HERMES RNA binding protein, mRNA processing factor protein-coding 172-84 chr8 87444215 87444805 + 0.5 NA Intergenic Intergenic 429505 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 241.75-10 chr17 61534901 61535656 + 0.5 NA Intergenic L1M5|LINE|L1 55941 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 155-39 chr18 38990259 38990757 + 0.5 NA Intergenic Intergenic 631667 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 153.5-88 chr6 53936424 53936887 + 0.5 NA intron (NR_125842, intron 1 of 3) intron (NR_125842, intron 1 of 3) 6673 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 153.5-23 chr12 61687694 61688133 + 0.5 NA Intergenic Intergenic 504926 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 151.75-57 chr20 8518610 8519055 + 0.5 NA intron (NM_182734, intron 3 of 32) MER1A|DNA|hAT-Charlie 270128 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 178.5-42 chr2 209922714 209923263 + 0.5 NA intron (NM_032504, intron 34 of 63) L1M4|LINE|L1 -79577 NM_006916 6120 Hs.282260 NM_006916 ENSG00000197713 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 236.75-16 chr3 47165039 47165782 + 0.5 NA intron (NR_033373, intron 1 of 6) AluSx|SINE|Alu 1040 NR_033373 285352 Hs.570631 NR_033373 KIF9-AS1 - KIF9 antisense RNA 1 ncRNA 231-28 chr8 86542267 86542950 + 0.5 NA intron (NM_003909, intron 8 of 16) (AT)n|Simple_repeat|Simple_repeat 28173 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 206.75-54 chr8 80871541 80872068 + 0.5 NA intron (NM_001033723, intron 1 of 8) intron (NM_001033723, intron 1 of 8) 2664 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 161.5-71 chr4 125795928 125796415 + 0.5 NA Intergenic L1MEi|LINE|L1 288912 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 172-85 chr8 108693967 108694587 + 0.5 NA intron (NR_136411, intron 1 of 3) L1MB5|LINE|L1 93317 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 167.25-42 chr2 239963553 239964059 + 0.5 NA intron (NM_001322020, intron 8 of 8) intron (NM_001322020, intron 8 of 8) -20712 NR_039949 100616417 NR_039949 ENSG00000264279 MIR4786 mir-4786 microRNA 4786 ncRNA 155.75-104 chr8 118826254 118826757 + 0.5 NA Intergenic LTR79|LTR|ERVL 125380 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 147.75-87 chr5 38068482 38069006 + 0.5 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 43047 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 152-77 chr5 130849308 130849773 + 0.5 NA Intergenic Intergenic 315716 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 183.25-37 chr2 183768164 183768651 + 0.5 NA Intergenic Intergenic -610568 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 152.25-88 chr6 47408104 47408709 + 0.5 NA Intergenic Intergenic -69383 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 148.25-61 chr3 105780057 105780622 + 0.5 NA intron (NR_135809, intron 3 of 18) intron (NR_135809, intron 3 of 18) 87252 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 176.5-19 chr14 52998997 52999422 + 0.5 NA Intergenic L1ME4b|LINE|L1 -48112 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 173.75-45 chr3 103865851 103866539 + 0.5 NA Intergenic MER20|DNA|hAT-Charlie -342079 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 269.25-18 chr7 35012427 35013066 + 0.5 NA intron (NM_015283, intron 4 of 21) intron (NM_015283, intron 4 of 21) 24739 NM_001366673 23333 Hs.408623 NM_015283 ENSG00000173852 DPY19L1 - dpy-19 like C-mannosyltransferase 1 protein-coding 205.25-3 chr1 71129600 71130300 + 0.5 NA intron (NR_046217, intron 2 of 3) L1MA9|LINE|L1 48626 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 183-13 chr13 52987494 52988138 + 0.5 NA Intergenic L1ME3E|LINE|L1 -40997 NM_006418 10562 Hs.508113 NM_006418 ENSG00000102837 OLFM4 GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD olfactomedin 4 protein-coding 220.75-15 chr19 36057313 36057826 + 0.5 NA intron (NM_001083961, intron 1 of 31) AluSx3|SINE|Alu 2672 NM_173636 284403 Hs.116244 NM_173636 ENSG00000075702 WDR62 C19orf14|MCPH2 WD repeat domain 62 protein-coding 174-67 chr8 68448100 68448567 + 0.5 NA intron (NR_146187, intron 3 of 13) L1M4a1|LINE|L1 -116842 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 192-59 chrX 104991034 104991589 + 0.5 NA intron (NM_017416, intron 2 of 10) intron (NM_017416, intron 2 of 10) 229382 NM_031274 56157 Hs.567543 NM_031274 ENSG00000268629 TEX13A - testis expressed 13A protein-coding 186.25-52 chr5 174626166 174626627 + 0.5 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 -98186 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 162-11 chr10 118028446 118028912 + 0.5 NA intron (NM_014904, intron 3 of 4) intron (NM_014904, intron 3 of 4) -18142 NR_026940 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 154-45 chr18 58937376 58937842 + 0.5 NA intron (NM_001353534, intron 4 of 8) intron (NM_001353534, intron 4 of 8) 72732 NM_001353527 55205 Hs.529023 NM_018181 ENSG00000074657 ZNF532 - zinc finger protein 532 protein-coding 169.5-80 chr6 146637296 146637725 + 0.5 NA intron (NM_024694, intron 2 of 35) intron (NM_024694, intron 2 of 35) 38538 NM_024694 79747 Hs.720870 NM_024694 ENSG00000118492 ADGB C6orf103|CAPN16 androglobin protein-coding 150.75-18 chr12 3541215 3541667 + 0.5 NA intron (NM_019854, intron 2 of 9) MamRep1879|DNA|hAT-Tip100? -48622 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 203.75-33 chr4 163769432 163770020 + 0.5 NA intron (NM_001166373, intron 3 of 7) intron (NM_001166373, intron 3 of 7) -156192 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 210.75-29 chr3 17292218 17293023 + 0.5 NA intron (NM_014744, intron 14 of 21) intron (NM_014744, intron 14 of 21) 359424 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 185-31 chr18 77341571 77342008 + 0.5 NA Intergenic Intergenic 91941 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 200.5-49 chr5 16690865 16691433 + 0.5 NA intron (NM_012334, intron 27 of 40) AluYf1|SINE|Alu -74091 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 217.25-35 chr4 20041583 20042432 + 0.5 NA Intergenic Intergenic -209898 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 161-21 chr12 24797384 24797909 + 0.5 NA Intergenic Intergenic 104576 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 187.75-58 chr5 95653021 95653664 + 0.5 NA intron (NM_001131066, intron 3 of 5) LTR84b|LTR|ERVL 6463 NM_173362 317671 Hs.399758 NM_173362 ENSG00000175449 RFESD - Rieske Fe-S domain containing protein-coding 173.25-34 chr2 26259039 26259616 + 0.5 NA intron (NM_001281512, intron 3 of 14) LTR22A|LTR|ERVK 14388 NM_000183 3032 Hs.515848 NM_000183 ENSG00000138029 HADHB ECHB|MSTP029|MTPB|TP-BETA hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta protein-coding 193-49 chr7 10657478 10658224 + 0.5 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) -44825 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 156-83 chr7 2752269 2752649 + 0.5 NA intron (NM_007353, intron 2 of 3) L1MEf|LINE|L1 10681 NM_001282440 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 188.75-62 chr7 119439087 119439612 + 0.5 NA Intergenic L2a|LINE|L2 468026 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 165.75-109 chr8 105893200 105893658 + 0.5 NA intron (NR_125796, intron 2 of 7) L1MC4a|LINE|L1 167074 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 183-39 chr5 25222762 25223186 + 0.5 NA intron (NR_136209, intron 1 of 3) intron (NR_136209, intron 1 of 3) 32021 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 189.75-76 chr8 59205470 59205941 + 0.5 NA Intergenic Intergenic 86495 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 186.75-81 chr8 83873950 83874455 + 0.5 NA Intergenic Intergenic -308585 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 205-50 chr9 75468191 75468762 + 0.5 NA Intergenic Intergenic 379962 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 206.75-8 chr1 225534152 225534810 + 0.5 NA intron (NM_001008493, intron 3 of 14) intron (NM_001008493, intron 3 of 14) -105626 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 151.5-97 chr8 57338416 57338876 + 0.5 NA Intergenic MIRb|SINE|MIR -5141 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 208.25-2 chr1 76035812 76036360 + 0.5 NA Intergenic Charlie26a|DNA|hAT-Charlie 24762 NR_125939 101927342 Hs.216363 NR_125939 LOC101927342 - uncharacterized LOC101927342 ncRNA 176.75-34 chr2 40933336 40933792 + 0.5 NA Intergenic L1ME4b|LINE|L1 -421129 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 200.25-26 chr17 62667586 62668149 + 0.5 NA intron (NM_006039, intron 6 of 29) L2c|LINE|L2 -38339 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 260.25-12 chr20 55559002 55559761 + 0.5 NA Intergenic MER2|DNA|TcMar-Tigger -132184 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 147.75-80 chr4 97484360 97484672 + 0.5 NA intron (NR_102713, intron 4 of 5) L1PB1|LINE|L1 117590 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 158.5-66 chr3 34572814 34573354 + 0.5 NA Intergenic Intergenic 774454 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 182.5-51 chr4 163833128 163833799 + 0.5 NA intron (NM_001166373, intron 3 of 7) L1PA4|LINE|L1 -219929 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 293.75-4 chr2 95371929 95372820 + 0.5 NA intron (NM_001034914, intron 1 of 7) L1ME5|LINE|L1 25716 NM_001034914 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 170.5-7 chr11 21278710 21279207 + 0.5 NA intron (NM_201551, intron 14 of 18) L1MC1|LINE|L1 609372 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 189.5-72 chr8 104948485 104948946 + 0.5 NA Intergenic Intergenic -359691 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 178-65 chr7 111667276 111667970 + 0.5 NA Intergenic Intergenic -105106 NM_001350963 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 187.25-57 chr6 95412328 95412962 + 0.5 NA Intergenic Intergenic 164806 NR_104136 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 160.25-45 chr3 37812544 37812970 + 0.5 NA intron (NM_002207, intron 27 of 27) intron (NM_002207, intron 27 of 27) 49023 NR_110531 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 201-11 chr13 76483310 76483903 + 0.5 NA Intergenic L1M5|LINE|L1 402799 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 149-35 chr2 28841126 28841537 + 0.5 NA TTS (NM_001008779) TTS (NM_001008779) 25334 NM_001008779 245711 Hs.511956 NM_182756 ENSG00000163806 SPDYA RINGO3|RINGOA|SPDY1|SPY1 speedy/RINGO cell cycle regulator family member A protein-coding 177.25-44 chr22 46151338 46151825 + 0.5 NA intron (NM_001362873, intron 1 of 8) intron (NM_001362873, intron 1 of 8) 786 NM_001362873 5465 Hs.103110 NM_005036 ENSG00000186951 PPARA NR1C1|PPAR|PPARalpha|hPPAR peroxisome proliferator activated receptor alpha protein-coding 288.75-9 chr3 186953613 186954568 + 0.5 NA intron (NM_173216, intron 1 of 7) L1PA10|LINE|L1 23564 NM_173217 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 154.5-68 chr4 12864420 12864807 + 0.5 NA Intergenic L2a|LINE|L2 619727 NM_001017979 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 240.75-4 chr11 4828590 4829348 + 0.5 NA Intergenic Intergenic 7648 NM_001004753 119694 Hs.553562 NM_001004753 ENSG00000176925 OR51F2 OR11-23 olfactory receptor family 51 subfamily F member 2 protein-coding 206.5-33 chr4 105531430 105532082 + 0.5 NA Intergenic L1MC5|LINE|L1 -20864 NM_017700 54848 Hs.585224 NM_017700 ENSG00000236699 ARHGEF38 - Rho guanine nucleotide exchange factor 38 protein-coding 158-20 chr14 45073372 45073951 + 0.5 NA non-coding (NR_131765, exon 20 of 20) non-coding (NR_131765, exon 20 of 20) -10455 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 208.5-66 chrX 155155891 155156385 + 0.5 NA Intergenic MER2|DNA|TcMar-Tigger -40869 NM_001303544 7411 Hs.436803 NM_003372 ENSG00000155959 VBP1 HIBBJ46|PFD3|PFDN3|VBP-1 VHL binding protein 1 protein-coding 152.5-49 chr2 31358306 31358826 + 0.5 NA intron (NM_000379, intron 24 of 35) L1MDa|LINE|L1 56176 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 198.25-58 chr8 128370056 128370718 + 0.5 NA Intergenic LTR8B|LTR|ERV1 194292 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 148-42 chr18 76746512 76746976 + 0.5 NA Intergenic L1PB1|LINE|L1 56715 NR_122073 400661 Hs.514963 NR_122073 ENSG00000276397 LINC01879 - long intergenic non-protein coding RNA 1879 ncRNA 170.5-84 chrX 121886626 121887237 + 0.5 NA Intergenic Zaphod|DNA|hAT-Tip100 515959 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 163.5-33 chr14 71974066 71974595 + 0.5 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 40803 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 160.5-84 chr5 24647326 24647790 + 0.5 NA Intergenic Intergenic -2580 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 161.75-49 chr3 109993987 109994608 + 0.5 NA Intergenic Intergenic 391469 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 212.5-20 chr18 75023040 75023885 + 0.5 NA intron (NM_017757, intron 7 of 7) intron (NM_017757, intron 7 of 7) 182051 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 170.5-51 chr3 104004184 104004620 + 0.5 NA Intergenic Intergenic -480286 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 160.25-58 chr5 56165298 56165842 + 0.5 NA intron (NM_024669, intron 5 of 11) MIRb|SINE|MIR 67760 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 178.5-31 chr16 48186320 48186877 + 0.5 NA intron (NM_001370497, intron 22 of 29) intron (NM_001370497, intron 22 of 29) -39828 NM_033226 94160 Hs.410111 NM_033226 ENSG00000140798 ABCC12 MRP9 ATP binding cassette subfamily C member 12 protein-coding 178.25-50 chr5 2573470 2574011 + 0.5 NA Intergenic L1ME1|LINE|L1 -138851 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 149.25-34 chr15 101680192 101680561 + 0.5 NA intron (NM_152334, intron 12 of 18) L1MDa|LINE|L1 -27985 NM_001307960 80213 Hs.288912 NM_025141 ENSG00000184277 TM2D3 BLP2 TM2 domain containing 3 protein-coding 257-10 chr5 7343584 7344269 + 0.5 NA Intergenic THE1A|LTR|ERVL-MaLR 4051 NR_134277 101929261 Hs.308202 NR_134277 ENSG00000250668 LINC02123 - long intergenic non-protein coding RNA 2123 ncRNA 156.75-35 chr13 109021835 109022221 + 0.5 NA intron (NM_015011, intron 23 of 34) intron (NM_015011, intron 23 of 34) 145275 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 161-28 chr14 34978422 34979024 + 0.5 NA intron (NR_151701, intron 1 of 4) intron (NR_151701, intron 1 of 4) 3843 NR_151701 100506157 NR_151701 SRP54-AS1 - SRP54 antisense RNA 1 (head to head) ncRNA 213.75-18 chr3 52910553 52911150 + 0.5 NA intron (NM_016329, intron 17 of 20) MER58C|DNA|hAT-Charlie -13303 NM_198563 375346 Hs.744189 NM_198563 ENSG00000213533 STIMATE TMEM110 STIM activating enhancer protein-coding 193.25-46 chr4 58331457 58332124 + 0.5 NA Intergenic Intergenic 204538 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 158.25-3 chr1 100619668 100620122 + 0.5 NA Intergenic AluJb|SINE|Alu 27109 NR_038914 100128787 Hs.536050 NR_038914 LINC01349 - long intergenic non-protein coding RNA 1349 ncRNA 151-60 chr3 51718037 51718580 + 0.5 NA non-coding (NR_146059, exon 4 of 4) non-coding (NR_146059, exon 4 of 4) 11240 NM_001349116 2912 Hs.121510 NM_000839 ENSG00000164082 GRM2 GLUR2|GPRC1B|MGLUR2|mGlu2 glutamate metabotropic receptor 2 protein-coding 189.75-50 chr3 103831822 103832481 + 0.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -308035 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 230-11 chr2 58721328 58722003 + 0.5 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 200912 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 209.75-34 chr5 131436563 131437345 + 0.5 NA intron (NM_001164389, intron 24 of 24) intron (NM_001164389, intron 24 of 24) 172945 NM_020240 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 261.25-8 chr3 171067759 171068645 + 0.5 NA intron (NM_001161563, intron 29 of 31) intron (NM_001161563, intron 29 of 31) 38557 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 163.5-85 chr4 105379165 105379575 + 0.5 NA intron (NM_176869, intron 10 of 11) (AT)n|Simple_repeat|Simple_repeat -26489 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 200.75-5 chr10 62402461 62403014 + 0.5 NA TTS (NM_014951) TTS (NM_014951) -27610 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 149-3 chr1 66339390 66339913 + 0.5 NA intron (NM_001037339, intron 1 of 9) intron (NM_001037339, intron 1 of 9) 7543 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 173-36 chr2 41052112 41052648 + 0.5 NA Intergenic Intergenic -539945 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 157.25-24 chr14 82578580 82579207 + 0.5 NA Intergenic Charlie5|DNA|hAT-Charlie -63739 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 148-34 chr16 2719209 2719636 + 0.5 NA intron (NM_001318395, intron 1 of 4) intron (NM_001318395, intron 1 of 4) 802 NM_031948 83886 Hs.332878 NM_031948 ENSG00000172382 PRSS27 CAPH2|MPN serine protease 27 protein-coding 207.25-23 chr16 17040414 17040855 + 0.5 NA Intergenic Intergenic -93870 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 160.75-21 chr11 95991006 95991581 + 0.5 NA intron (NM_032427, intron 3 of 4) intron (NM_032427, intron 3 of 4) -67086 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 153-91 chr8 87923352 87923795 + 0.5 NA Intergenic Intergenic -49558 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 264.25-3 chr11 76187439 76188346 + 0.5 NA intron (NM_004626, intron 4 of 4) AluSz6|SINE|Alu 18610 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 147.75-40 chr15 85133462 85133951 + 0.5 NA intron (NM_001243137, intron 20 of 21) intron (NM_001243137, intron 20 of 21) 101075 NR_158179 101929479 Hs.681665 NR_158179 LOC101929479 - golgin A2 pseudogene pseudo 156-88 chr7 96672713 96673248 + 0.5 NA intron (NR_163952, intron 2 of 6) MIR|SINE|MIR -8642 NR_038948 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 151-41 chr2 73366634 73366980 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL -18951 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 175.5-82 chr6 65453071 65453752 + 0.5 NA intron (NM_198283, intron 4 of 9) L1MA6|LINE|L1 126393 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 156.25-84 chr7 14482650 14483241 + 0.5 NA intron (NM_001350717, intron 19 of 24) L1M4|LINE|L1 358505 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 177.75-8 chr10 25310899 25311486 + 0.5 NA intron (NM_020752, intron 2 of 10) L1MC4a|LINE|L1 -134916 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 267.75-5 chr14 48847906 48848895 + 0.5 NA Intergenic AluSz|SINE|Alu 737980 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 230-31 chr8 80972470 80973031 + 0.5 NA 3' UTR (NM_018440, exon 9 of 9) 3' UTR (NM_018440, exon 9 of 9) -97969 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 218.75-7 chr12 21540128 21540642 + 0.5 NA intron (NM_021957, intron 14 of 15) intron (NM_021957, intron 14 of 15) 12460 NR_135188 80763 Hs.130692 NM_030572 ENSG00000134548 SPX C12orf39 spexin hormone protein-coding 276.5-8 chr17 61768916 61769910 + 0.5 NA intron (NM_032043, intron 14 of 19) intron (NM_032043, intron 14 of 19) 94146 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 204.75-21 chr18 34924641 34925147 + 0.5 NA Intergenic L1M4b|LINE|L1 -52034 NM_001143826 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 167.25-63 chr5 73778350 73778932 + 0.5 NA intron (NM_001177693, intron 6 of 35) intron (NM_001177693, intron 6 of 35) -34905 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 152-88 chr7 20317639 20318140 + 0.5 NA Intergenic Intergenic -13011 NM_002214 3696 Hs.592171 NM_002214 ENSG00000105855 ITGB8 - integrin subunit beta 8 protein-coding 238.75-37 chrX 101459766 101460302 + 0.5 NA intron (NR_028407, intron 4 of 15) MER5A|DNA|hAT-Charlie -25422 NR_045861 100131755 Hs.729062 NM_152583 ENSG00000196440 ARMCX4 CXorf35|GASP4 armadillo repeat containing X-linked 4 protein-coding 195.5-22 chr16 34596946 34597378 + 0.5 NA Intergenic Intergenic -215682 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 167.75-101 chr9 83494210 83494757 + 0.5 NA intron (NM_174938, intron 1 of 13) Tigger19b|DNA|TcMar-Tigger -26741 NM_001244960 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 152.75-77 chr5 72207894 72208374 + 0.5 NA 3' UTR (NM_005909, exon 7 of 7) 3' UTR (NM_005909, exon 7 of 7) 28347 NM_001324255 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 146.75-108 chr7 85024951 85025440 + 0.5 NA intron (NM_152754, intron 10 of 16) intron (NM_152754, intron 10 of 16) 96736 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 169.25-39 chr4 53672941 53673376 + 0.5 NA Intergenic Intergenic -22743 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 153.25-18 chr10 67403580 67404077 + 0.5 NA promoter-TSS (NR_106973) promoter-TSS (NR_106973) -418 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 163.25-87 chr8 133008429 133008842 + 0.5 NA intron (NM_003235, intron 35 of 47) intron (NM_003235, intron 35 of 47) 37946 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 176-54 chr5 25890325 25890909 + 0.5 NA Intergenic LTR37-int|LTR|ERV1 699664 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 148-8 chr1 164883062 164883494 + 0.5 NA intron (NM_001353131, intron 7 of 7) intron (NM_001353131, intron 7 of 7) -108637 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 194.75-43 chr6 162550277 162550865 + 0.5 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -176561 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 146.5-57 chr2 153506752 153507219 + 0.5 NA Intergenic L1PB1|LINE|L1 -28223 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 157.75-111 chr8 132157274 132157828 + 0.5 NA intron (NM_001204824, intron 9 of 14) intron (NM_001204824, intron 9 of 14) -52286 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 165.75-17 chr10 32616396 32616775 + 0.5 NA intron (NM_001321115, intron 19 of 43) L1PB4|LINE|L1 170445 NR_109826 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 198.75-26 chr16 24968195 24968741 + 0.5 NA intron (NM_001006634, intron 5 of 19) intron (NM_001006634, intron 5 of 19) 46901 NM_018054 55114 Hs.373793 NM_018054 ENSG00000140750 ARHGAP17 MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15 Rho GTPase activating protein 17 protein-coding 152.25-46 chr2 69849254 69849745 + 0.5 NA intron (NM_178439, intron 7 of 13) intron (NM_178439, intron 7 of 13) 19839 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 199.75-25 chr19 47792655 47793291 + 0.5 NA Intergenic AluJr|SINE|Alu 10631 NM_198479 284355 Hs.629812 NM_198479 ENSG00000178928 TPRX1 TPRX tetrapeptide repeat homeobox 1 protein-coding 155.75-43 chr17 7522642 7523103 + 0.5 NA Intergenic MER61B|LTR|ERV1 -26186 NM_003809 8742 Hs.54673 NM_003809 ENSG00000239697 TNFSF12 APO3L|DR3LG|TNLG4A|TWEAK TNF superfamily member 12 protein-coding 163.5-53 chr2 14764691 14765039 + 0.5 NA Intergenic MLT1J|LTR|ERVL-MaLR 132148 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 157.25-104 chr8 110499413 110500006 + 0.5 NA Intergenic AluSg|SINE|Alu -523938 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 145.75-80 chr3 111368588 111369021 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -173393 NM_005816 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 161.5-97 chr9 109048755 109049378 + 0.5 NA intron (NM_032012, intron 14 of 17) intron (NM_032012, intron 14 of 17) -2768 NR_029506 407036 NR_029506 ENSG00000207698 MIR32 MIRN32|hsa-mir-32|miR-32|miRNA32 microRNA 32 ncRNA 263-7 chr18 69799759 69800448 + 0.5 NA intron (NM_152721, intron 7 of 7) intron (NM_152721, intron 7 of 7) 147770 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 168.75-48 chr2 109672904 109673276 + 0.5 NA Intergenic Intergenic 58726 NM_023016 65124 Hs.355455 NM_023016 ENSG00000198142 SOWAHC ANKRD57|C2orf26 sosondowah ankyrin repeat domain family member C protein-coding 281.75-15 chr5 102902793 102903529 + 0.5 NA intron (NR_157231, intron 5 of 14) intron (NR_157231, intron 5 of 14) 37338 NM_000919 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 230-34 chrX 51076755 51077514 + 0.5 NA Intergenic L1ME3B|LINE|L1 94287 NR_110382 101926971 Hs.657995 NR_110382 ENSG00000230317 LINC01284 - long intergenic non-protein coding RNA 1284 ncRNA 214.25-4 chr10 26301369 26301955 + 0.5 NA 3' UTR (NM_001134366, exon 16 of 16) 3' UTR (NM_001134366, exon 16 of 16) 84888 NM_001134366 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 190-16 chr15 39662538 39663164 + 0.5 NA intron (NM_152597, intron 10 of 11) intron (NM_152597, intron 10 of 11) 81772 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 208.75-11 chr15 76530915 76531372 + 0.5 NA intron (NR_148227, intron 23 of 32) intron (NR_148227, intron 23 of 32) -55504 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 174.25-38 chr22 47922971 47923534 + 0.5 NA Intergenic G-rich|Low_complexity|Low_complexity 291578 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 201-20 chr18 6195347 6195783 + 0.5 NA intron (NM_001365769, intron 12 of 16) intron (NM_001365769, intron 12 of 16) -61179 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 187.5-37 chr2 126659051 126659460 + 0.5 NA intron (NM_016815, intron 1 of 2) L1ME4b|LINE|L1 3097 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 162-25 chr14 43513999 43514615 + 0.5 NA Intergenic Intergenic 992976 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 222.5-35 chr3 173590473 173591124 + 0.5 NA intron (NM_001365928, intron 1 of 6) intron (NM_001365928, intron 1 of 6) 6364 NM_001365927 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 161.75-68 chr4 96272950 96273294 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL -37581 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 173.75-21 chr13 83875985 83876539 + 0.5 NA TTS (NM_052910) TTS (NM_052910) 6131 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 167.5-12 chr1 221773292 221773866 + 0.5 NA Intergenic Intergenic -31403 NR_111940 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 147-41 chr2 3784935 3785355 + 0.5 NA intron (NM_001287444, intron 10 of 10) intron (NM_001287444, intron 10 of 10) 78303 NM_001365580 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 180.25-37 chr2 164051154 164051775 + 0.5 NA Intergenic Intergenic -315456 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 150.75-21 chr13 90158739 90159197 + 0.5 NA Intergenic Intergenic -39251 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 152.75-90 chr7 41005689 41006082 + 0.5 NA Intergenic Intergenic -25946 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 231.25-5 chr10 67532146 67532686 + 0.5 NA intron (NM_001127384, intron 4 of 17) intron (NM_001127384, intron 4 of 17) -129006 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 158.75-35 chr18 60681019 60681382 + 0.5 NA Intergenic L1MC|LINE|L1 -308425 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 149.25-22 chr12 127860157 127860597 + 0.5 NA Intergenic L1ME3A|LINE|L1 -21240 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 156.75-60 chr21 14856085 14856581 + 0.5 NA intron (NR_146322, intron 2 of 3) intron (NR_146322, intron 2 of 3) 62335 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 148.25-41 chr2 13442373 13442911 + 0.5 NA Intergenic HERV16-int|LTR|ERVL -435629 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 177-73 chr9 27079522 27080087 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -29337 NM_001290078 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 146.25-53 chr21 35147621 35148109 + 0.5 NA Intergenic Intergenic -98567 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 192.25-45 chr4 53035941 53036397 + 0.5 NA intron (NM_152540, intron 5 of 8) L1PA6|LINE|L1 173852 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 189-47 chr4 88634165 88634670 + 0.5 NA intron (NM_001318505, intron 3 of 8) L1PA8|LINE|L1 41937 NM_014606 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 251-14 chr9 98195230 98196112 + 0.5 NA Intergenic Intergenic -3034 NM_052820 7464 Hs.113094 NM_003389 ENSG00000106789 CORO2A CLIPINB|IR10|WDR2 coronin 2A protein-coding 198.75-18 chr13 104064797 104065564 + 0.5 NA Intergenic MIR|SINE|MIR 639980 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 156.25-36 chr2 53389166 53389503 + 0.5 NA Intergenic Intergenic -378449 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 174.5-74 chr7 40515026 40515507 + 0.5 NA intron (NM_001193312, intron 11 of 12) L1MD2|LINE|L1 380290 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 166.5-32 chr16 79573305 79573956 + 0.5 NA Intergenic L2c|LINE|L2 27107 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 199.25-19 chr15 49994584 49995114 + 0.5 NA intron (NR_073597, intron 9 of 26) MLT1I|LTR|ERVL-MaLR 118530 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 202.25-31 chr2 43588942 43589376 + 0.5 NA intron (NM_001083953, intron 4 of 37) L1MB2|LINE|L1 6815 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 204-40 chr8 20452634 20453333 + 0.5 NA Intergenic Intergenic -149020 NM_021020 11178 Hs.521432 NM_021020 ENSG00000061337 LZTS1 F37|FEZ1 leucine zipper tumor suppressor 1 protein-coding 176.5-33 chr19 47149235 47149626 + 0.5 NA intron (NM_005500, intron 2 of 8) AluSx|SINE|Alu 18595 NM_001145714 10055 Hs.515500 NM_005500 ENSG00000142230 SAE1 AOS1|HSPC140|SUA1|UBLE1A SUMO1 activating enzyme subunit 1 protein-coding 146.25-87 chr7 53081315 53081760 + 0.5 NA Intergenic L1MD2|LINE|L1 45904 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 146.75-82 chr4 119794714 119795053 + 0.5 NA Intergenic LTR22A|LTR|ERVK 9632 NR_110660 101927007 Hs.143958 NR_110660 ENSG00000250772 LINC01365 - long intergenic non-protein coding RNA 1365 ncRNA 146.75-90 chr5 98038531 98038994 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 122477 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 292-5 chr5 130130968 130131923 + 0.5 NA intron (NM_175856, intron 2 of 2) L2a|LINE|L2 226980 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 196.5-56 chr8 15497909 15498597 + 0.5 NA Intergenic L2a|LINE|L2 -41834 NM_178234 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 164.5-28 chr18 64271412 64271842 + 0.5 NA intron (NR_033881, intron 3 of 9) intron (NR_033881, intron 3 of 9) -11572 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 156-32 chr17 53491800 53492300 + 0.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR -330877 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 154-4 chr1 63414202 63414810 + 0.5 NA intron (NM_013339, intron 10 of 14) AluSx1|SINE|Alu 46879 NM_013339 29929 Hs.258501 NM_013339 ENSG00000088035 ALG6 CDG1C ALG6 alpha-1,3-glucosyltransferase protein-coding 157.25-3 chr1 84950583 84951116 + 0.5 NA intron (NM_153259, intron 6 of 13) intron (NM_153259, intron 6 of 13) 46264 NM_001330647 255231 Hs.591446 NM_153259 ENSG00000153898 MCOLN2 TRP-ML2|TRPML2 mucolipin 2 protein-coding 154.75-86 chr5 111547229 111547755 + 0.5 NA intron (NR_040093, intron 1 of 6) intron (NR_040093, intron 1 of 6) -34895 NM_001308058 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 171.75-66 chr5 144296710 144297204 + 0.5 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 91566 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 166.5-63 chr5 27127649 27128233 + 0.5 NA Intergenic Intergenic -89355 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 169.5-15 chr10 91497597 91498138 + 0.5 NA intron (NM_182765, intron 15 of 20) intron (NM_182765, intron 15 of 20) 87582 NR_145526 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 190.25-15 chr18 10995651 10996313 + 0.5 NA intron (NM_022068, intron 2 of 51) intron (NM_022068, intron 2 of 51) 152780 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 187.5-43 chr3 80782219 80782687 + 0.5 NA intron (NR_147143, intron 2 of 4) L1MB8|LINE|L1 11749 NR_147145 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 163.5-59 chr2 121091307 121091817 + 0.5 NA Intergenic AluJr|SINE|Alu 193640 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 188.75-42 chr3 85324249 85324728 + 0.5 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -61222 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 224-10 chr11 83312030 83312641 + 0.5 NA Intergenic Intergenic -25928 NM_001286120 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 148.75-79 chr5 107326220 107326727 + 0.5 NA Intergenic LTR16C|LTR|ERVL -315459 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 158-17 chr12 20037486 20037948 + 0.5 NA intron (NR_040098, intron 2 of 2) Charlie1a|DNA|hAT-Charlie 23032 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 166.75-56 chr3 116424957 116425477 + 0.5 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) 20270 NM_001318915 4045 Hs.26409 NM_002338 ENSG00000185565 LSAMP IGLON3|LAMP limbic system associated membrane protein protein-coding 200.25-42 chr5 149758932 149759552 + 0.5 NA intron (NM_001172698, intron 1 of 10) intron (NM_001172698, intron 1 of 10) -12698 NM_001172699 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 186.5-39 chr3 82918422 82918901 + 0.5 NA Intergenic Intergenic 932519 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 154.5-55 chr21 26017444 26017817 + 0.5 NA intron (NM_001204301, intron 6 of 16) intron (NM_001204301, intron 6 of 16) 122760 NM_001136016 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 180.75-35 chr2 153030068 153030670 + 0.5 NA Intergenic Intergenic 311732 NR_146430 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 154.75-49 chr2 167385406 167385867 + 0.5 NA Intergenic MIR|SINE|MIR 198264 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 146-80 chr6 65380132 65380531 + 0.5 NA intron (NM_198283, intron 7 of 9) L1PA8|LINE|L1 78913 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 242-24 chr9 100727649 100728574 + 0.5 NA Intergenic Intergenic 150032 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 207.5-42 chr8 74884134 74884960 + 0.5 NA Intergenic Intergenic 60013 NM_001324403 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 190.5-57 chr7 17209506 17210241 + 0.5 NA Intergenic L1MC5a|LINE|L1 -88779 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 186.5-44 chr3 175764769 175765271 + 0.5 NA intron (NM_207015, intron 13 of 13) intron (NM_207015, intron 13 of 13) 11313 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 190-42 chr4 37889416 37889861 + 0.5 NA Intergenic MIRb|SINE|MIR -1446 NM_001253912 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 176-40 chr21 21207903 21208514 + 0.5 NA intron (NM_001352597, intron 1 of 10) intron (NM_001352597, intron 1 of 10) 61046 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 242-10 chr16 19525968 19526757 + 0.5 NA intron (NM_014711, intron 2 of 14) intron (NM_014711, intron 2 of 14) 2420 NM_001323570 9738 Hs.279912 NM_014711 ENSG00000103540 CCP110 CP110|Cep110 centriolar coiled-coil protein 110 protein-coding 192.25-66 chrX 5930592 5931055 + 0.5 NA intron (NM_001282145, intron 4 of 6) intron (NM_001282145, intron 4 of 6) -295535 NR_136577 105373156 Hs.21107 NR_136577 LOC105373156 - uncharacterized LOC105373156 ncRNA 211.5-36 chr3 95557935 95558635 + 0.5 NA Intergenic Tigger3c|DNA|TcMar-Tigger 124908 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 153.75-48 chr3 124592256 124592767 + 0.5 NA intron (NM_007064, intron 1 of 26) intron (NM_007064, intron 1 of 26) 7852 NM_001322997 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 167.5-2 chr1 41988720 41989192 + 0.5 NA intron (NR_038261, intron 1 of 3) L1MA8|LINE|L1 46978 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 177-30 chr2 132406285 132406816 + 0.5 NA Intergenic L1MA9|LINE|L1 -10255 NM_001508 2863 Hs.432395 NM_001508 ENSG00000183840 GPR39 - G protein-coupled receptor 39 protein-coding 232.5-45 chr6 132430638 132431231 + 0.5 NA Intergenic Intergenic -29459 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 154.75-55 chr20 7604941 7605507 + 0.5 NA Intergenic L1MA2|LINE|L1 233616 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 215-3 chr10 8786704 8787413 + 0.5 NA Intergenic MLT2B1|LTR|ERVL -110931 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 180.25-26 chr18 61586004 61586542 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -161903 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 198-16 chr20 38043527 38043986 + 0.5 NA intron (NM_021215, intron 2 of 6) L2a|LINE|L2 10010 NM_021215 58490 Hs.278839 NM_021215 ENSG00000101413 RPRD1B C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2 regulation of nuclear pre-mRNA domain containing 1B protein-coding 149-105 chr9 80423055 80423461 + 0.5 NA Intergenic Intergenic 448235 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 145.75-123 chr8 40537075 40537651 + 0.5 NA intron (NM_024645, intron 6 of 6) intron (NM_024645, intron 6 of 6) -194000 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 148-66 chr3 166263551 166264011 + 0.5 NA Intergenic Intergenic -426358 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 193-33 chr3 86307166 86307617 + 0.5 NA Intergenic L2b|LINE|L2 -174552 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 166.5-47 chr21 28168244 28168712 + 0.5 NA intron (NR_126012, intron 4 of 5) intron (NR_126012, intron 4 of 5) 60189 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 179.5-87 chr9 132109566 132110098 + 0.5 NA Intergenic Intergenic -29965 NM_001253882 9442 Hs.374262 NM_004269 ENSG00000160563 MED27 CRAP34|CRSP34|CRSP8|MED3|TRAP37 mediator complex subunit 27 protein-coding 166.5-61 chr4 134010211 134010799 + 0.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR 191284 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 151.75-59 chr22 41520616 41521000 + 0.5 NA intron (NM_001098, intron 9 of 17) AluSc8|SINE|Alu 23662 NM_001018050 171568 Hs.712617 NM_138338 ENSG00000100413 POLR3H RPC22.9|RPC8 RNA polymerase III subunit H protein-coding 149.75-24 chr13 88780043 88780580 + 0.5 NA Intergenic Intergenic 153458 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 147.75-111 chr8 82604435 82604916 + 0.5 NA Intergenic L1MC4a|LINE|L1 -307429 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 180.25-19 chr14 53734224 53734939 + 0.5 NA Intergenic MSTB2|LTR|ERVL-MaLR 213903 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 157.5-33 chr15 47720756 47721254 + 0.5 NA intron (NM_153618, intron 1 of 18) intron (NM_153618, intron 1 of 18) 2516 NM_153619 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 199.75-35 chr21 16459444 16460208 + 0.5 NA intron (NR_136550, intron 1 of 3) intron (NR_136550, intron 1 of 3) 39531 NR_136550 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 191.25-39 chr2 118055074 118055818 + 0.5 NA Intergenic Intergenic -32972 NM_001321331 51141 Hs.7089 NM_016133 ENSG00000125629 INSIG2 INSIG-2 insulin induced gene 2 protein-coding 174-51 chr5 53403722 53404383 + 0.5 NA Intergenic Intergenic -76577 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 146.25-84 chr7 25091054 25091553 + 0.5 NA Intergenic Intergenic 34058 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 158.75-83 chr8 103699885 103700487 + 0.5 NA intron (NM_001348497, intron 2 of 22) L1MEc|LINE|L1 -119034 NM_001348503 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 169.5-65 chr4 54869293 54869790 + 0.5 NA Intergenic AluJr|SINE|Alu 211613 NM_001093772 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 149.75-107 chr9 34807061 34807593 + 0.5 NA Intergenic FordPrefect|DNA|hAT-Tip100 31259 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 162.5-22 chr12 123589194 123589660 + 0.5 NA intron (NM_001321445, intron 3 of 4) intron (NM_001321445, intron 3 of 4) 4875 NM_001321445 10959 Hs.733403 NM_006815 ENSG00000086598 TMED2 P24A|RNP24|p24|p24b1|p24beta1 transmembrane p24 trafficking protein 2 protein-coding 154.5-8 chr1 157857585 157858099 + 0.5 NA Intergenic L1ME2|LINE|L1 -16034 NM_001347698 922 Hs.134035 NM_005894 ENSG00000073754 CD5L AIM|API6|CT-2|PRO229|SP-ALPHA|Spalpha|hAIM CD5 molecule like protein-coding 153.75-64 chr5 59646733 59647108 + 0.5 NA intron (NM_001165899, intron 3 of 16) AluSc8|SINE|Alu 56783 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 207-33 chr4 72421209 72421791 + 0.5 NA intron (NM_014243, intron 3 of 21) L2|LINE|L2 147721 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 153.5-51 chr2 137420470 137421018 + 0.5 NA intron (NM_001316349, intron 14 of 27) MLT1D|LTR|ERVL-MaLR 507188 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 150.75-39 chr2 71326757 71327172 + 0.5 NA Intergenic L2a|LINE|L2 -4791 NM_001252612 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 152.75-95 chr7 127902152 127902598 + 0.5 NA intron (NM_014390, intron 13 of 23) intron (NM_014390, intron 13 of 23) -95134 NR_027330 27099 Hs.657377 NM_014411 ENSG00000279078 SND1-IT1 C7orf54|NAG8|NSG-X SND1 intronic transcript 1 ncRNA 157.75-36 chr14 62033118 62033561 + 0.5 NA intron (NM_001367661, intron 4 of 8) intron (NM_001367661, intron 4 of 8) -84018 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 194.75-47 chr7 97610553 97611102 + 0.5 NA Intergenic Intergenic -121259 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 171-3 chr1 75166250 75166878 + 0.5 NA Intergenic Intergenic 32176 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 219.25-37 chr4 129935886 129936597 + 0.5 NA intron (NR_151713, intron 13 of 16) intron (NR_151713, intron 13 of 16) 164622 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 173.25-37 chr2 99795997 99796407 + 0.5 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) -306185 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 170.25-32 chr2 162311171 162311767 + 0.5 NA intron (NM_022168, intron 1 of 15) intron (NM_022168, intron 1 of 15) 7215 NM_022168 64135 Hs.163173 NM_022168 ENSG00000115267 IFIH1 AGS7|Hlcd|IDDM19|MDA-5|MDA5|RLR-2|SGMRT1 interferon induced with helicase C domain 1 protein-coding 150.5-23 chr10 96190395 96190862 + 0.5 NA intron (NR_138482, intron 3 of 4) intron (NR_138482, intron 3 of 4) 60006 NM_001330734 9849 Hs.600823 NM_014803 ENSG00000177853 ZNF518A ZNF518 zinc finger protein 518A protein-coding 172.75-21 chr14 69114000 69114565 + 0.5 NA intron (NM_003861, intron 5 of 8) L1ME4b|LINE|L1 38317 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 176.75-75 chr6 66323595 66324149 + 0.5 NA Intergenic AluJr4|SINE|Alu 535993 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 155.25-82 chr7 33611355 33611818 + 0.5 NA intron (NM_001348041, intron 22 of 22) (TAATATA)n|Simple_repeat|Simple_repeat -293329 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 165.5-46 chr2 95118600 95119093 + 0.5 NA intron (NR_136152, intron 1 of 10) L1MB7|LINE|L1 2711 NM_001321997 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 156.5-42 chr18 1891036 1891542 + 0.5 NA Intergenic L1MC3|LINE|L1 -531660 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 209.25-47 chr8 51072136 51072612 + 0.5 NA Intergenic Intergenic 737071 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 175.5-34 chr16 60545636 60546309 + 0.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -186179 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 214.5-27 chr20 6625771 6626463 + 0.5 NA Intergenic L1ME1|LINE|L1 110019 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 167-88 chr8 102693840 102694388 + 0.5 NA Intergenic Intergenic 37866 NR_160672 101927245 NR_160672 LOC101927245 - uncharacterized LOC101927245 ncRNA 188.25-56 chr7 24322755 24323209 + 0.5 NA Intergenic Intergenic 38792 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 209.25-27 chr2 224587106 224587647 + 0.5 NA Intergenic MIR|SINE|MIR -1979 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 146-61 chr4 97886670 97887112 + 0.5 NA intron (NM_174952, intron 8 of 10) MSTA|LTR|ERVL-MaLR 256585 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 170.75-23 chr15 87089165 87089627 + 0.5 NA Intergenic L1ME4c|LINE|L1 -100970 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 189.75-16 chr10 60154190 60154746 + 0.5 NA intron (NM_001204404, intron 23 of 43) intron (NM_001204404, intron 23 of 43) -13452 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 289.75-3 chr11 41044545 41045394 + 0.5 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 414667 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 194-39 chr5 27100194 27100844 + 0.5 NA Intergenic Intergenic -61933 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 179-13 chr14 42031534 42032107 + 0.5 NA Intergenic Tigger4|DNA|TcMar-Tigger 424964 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 175.25-62 chr6 141393305 141393764 + 0.5 NA Intergenic MIRb|SINE|MIR 695265 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 167.75-49 chr2 188771845 188772331 + 0.5 NA intron (NR_161166, intron 1 of 1) ERVL-E-int|LTR|ERVL 18035 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 213.5-3 chr1 61926702 61927207 + 0.5 NA intron (NM_001350145, intron 26 of 43) intron (NM_001350145, intron 26 of 43) 80879 NR_162146 113219465 NR_162146 MIR12132 - microRNA 12132 ncRNA 157.5-32 chr15 47456148 47456638 + 0.5 NA intron (NM_001198999, intron 2 of 19) Charlie4a|DNA|hAT-Charlie -261112 NM_001358352 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 154.75-83 chr5 87710905 87711512 + 0.5 NA Intergenic Intergenic 49166 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 182-18 chr14 50497842 50498492 + 0.5 NA intron (NM_198794, intron 3 of 31) intron (NM_198794, intron 3 of 31) 34402 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 183.25-65 chr6 13130868 13131538 + 0.5 NA intron (NM_001322308, intron 4 of 13) (AC)n|Simple_repeat|Simple_repeat 117649 NM_001322314 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 154.5-11 chr1 228250599 228251023 + 0.5 NA intron (NM_052843, intron 14 of 80) HERVL-int|LTR|ERVL -37147 NR_073154 574407 Hs.650039 NM_001025495 ENSG00000162913 OBSCN-AS1 C1orf145 OBSCN antisense RNA 1 ncRNA 187.75-31 chr18 32605414 32605889 + 0.5 NA Intergenic Intergenic 93988 NR_003558 441818 Hs.549773 NR_003558 ENSG00000260389 WBP11P1 HsT3017 WW domain binding protein 11 pseudogene 1 pseudo 218.25-33 chr5 9532830 9533461 + 0.5 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) 12930 NM_003966 9037 Hs.27621 NM_003966 ENSG00000112902 SEMA5A SEMAF|semF semaphorin 5A protein-coding 216-16 chr14 63685217 63685950 + 0.5 NA 3' UTR (NM_030791, exon 3 of 3).2 3' UTR (NM_030791, exon 3 of 3).2 42482 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 154.25-74 chr6 164593633 164594004 + 0.5 NA Intergenic (TTTTG)n|Simple_repeat|Simple_repeat 228245 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 203-40 chr7 8681173 8681809 + 0.5 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 247882 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 164-30 chr2 17990684 17991288 + 0.5 NA Intergenic L1MD|LINE|L1 112319 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 199.25-51 chr5 29311970 29312719 + 0.5 NA Intergenic Intergenic 83632 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 243-17 chr5 9244536 9245256 + 0.5 NA intron (NM_003966, intron 5 of 22) intron (NM_003966, intron 5 of 22) -191001 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 174-72 chr9 32970421 32970918 + 0.5 NA Intergenic Intergenic 30907 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 200.75-38 chr4 99736216 99736951 + 0.5 NA Intergenic Intergenic -80244 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 215-17 chr21 29287868 29288422 + 0.5 NA TTS (NR_027072) TTS (NR_027072) -10777 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 218.5-16 chr17 59459184 59459897 + 0.5 NA intron (NR_110813, intron 2 of 2) Arthur1|DNA|hAT-Tip100 67317 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 296.75-6 chr8 115288373 115289178 + 0.5 NA Intergenic MER39B|LTR|ERV1 379238 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 176.25-15 chr12 14071078 14071662 + 0.5 NA Intergenic MLT1G|LTR|ERVL-MaLR -91014 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 172.5-40 chr20 42250799 42251273 + 0.5 NA intron (NM_007050, intron 13 of 30) intron (NM_007050, intron 13 of 30) -434447 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 163.5-60 chr2 128309256 128309674 + 0.5 NA intron (NM_004807, intron 1 of 1) intron (NM_004807, intron 1 of 1) 9403 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 147-56 chr20 55980389 55980900 + 0.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR 24875 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 169.5-25 chr12 5876719 5877220 + 0.5 NA intron (NM_001278596, intron 3 of 25) L1PA7|LINE|L1 68290 NM_001278596 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 173.5-50 chr3 44755571 44756241 + 0.5 NA intron (NM_001320334, intron 1 of 2).2 intron (NM_001320334, intron 1 of 2).2 5713 NM_001320334 57456 Hs.744955 NM_020696 ENSG00000163807 KIAA1143 - KIAA1143 protein-coding 192.25-12 chr11 27357282 27358009 + 0.5 NA intron (NM_030771, intron 1 of 5) intron (NM_030771, intron 1 of 5) 5570 NM_030771 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 L15|NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 147.5-12 chr10 74100258 74100705 + 0.5 NA intron (NM_014000, intron 13 of 21) intron (NM_014000, intron 13 of 21) 50347 NM_001320264 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 148.75-114 chrX 103471053 103471528 + 0.5 NA Intergenic Intergenic 48199 NM_080879 142684 Hs.706904 NM_080879 ENSG00000172476 RAB40A RAR2|RAR2A RAB40A, member RAS oncogene family protein-coding 146.5-56 chr2 144743030 144743580 + 0.5 NA intron (NR_033870, intron 1 of 4) intron (NR_033870, intron 1 of 4) 75338 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 158.5-73 chr4 59435807 59436243 + 0.5 NA Intergenic Intergenic 422452 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 156.75-72 chr5 14093737 14094293 + 0.5 NA Intergenic Intergenic -49327 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 162-17 chr11 125611315 125611826 + 0.5 NA intron (NM_152713, intron 11 of 17) intron (NM_152713, intron 11 of 17) -13566 NM_001114121 1111 Hs.24529 NM_001274 ENSG00000149554 CHEK1 CHK1 checkpoint kinase 1 protein-coding 181.75-64 chr8 83454507 83455134 + 0.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 51062 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 176-13 chr12 79572125 79572701 + 0.5 NA Intergenic AluSz|SINE|Alu 118167 NM_001354732 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 190-17 chr16 53095130 53095691 + 0.5 NA intron (NM_025134, intron 1 of 38) AluJr|SINE|Alu -35602 NM_001352127 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 208.5-25 chr17 70541954 70542575 + 0.5 NA Intergenic MER41A|LTR|ERV1 372729 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 145.75-100 chr6 62132858 62133237 + 0.5 NA intron (NR_146874, intron 2 of 13) MER58A|DNA|hAT-Charlie 153178 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 182-59 chr8 122145504 122145992 + 0.5 NA Intergenic Intergenic 422896 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 198.75-21 chr14 61325956 61326516 + 0.5 NA intron (NM_006255, intron 1 of 13) L1ME1|LINE|L1 4793 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 241.25-27 chr8 137294172 137294841 + 0.5 NA Intergenic Intergenic 119082 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 228.75-23 chr7 70400219 70400989 + 0.5 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) -731540 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 172.5-16 chr12 25770235 25770756 + 0.5 NA Intergenic Intergenic 103584 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 173.5-42 chr20 62940536 62941083 + 0.5 NA intron (NM_017896, intron 1 of 4) MER46C|DNA|TcMar-Tigger 2662 NM_017896 54994 Hs.353013 NM_017896 ENSG00000101193 GID8 C20orf11|TWA1 GID complex subunit 8 homolog protein-coding 167.75-31 chr15 46161927 46162573 + 0.5 NA Intergenic L1MA1|LINE|L1 457055 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 198.25-9 chr12 38886232 38886788 + 0.5 NA intron (NM_153634, intron 1 of 19) intron (NM_153634, intron 1 of 19) 19081 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 193.25-30 chr2 114367029 114367660 + 0.5 NA Intergenic Intergenic -75297 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 171-55 chr5 134954027 134954533 + 0.5 NA intron (NM_032151, intron 2 of 3) intron (NM_032151, intron 2 of 3) -13627 NM_178019 347732 Hs.631804 NM_178019 ENSG00000152705 CATSPER3 CACRC cation channel sperm associated 3 protein-coding 315.5-6 chr18 5339801 5340502 + 0.5 NA Intergenic L1M4|LINE|L1 -43098 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 167-59 chr4 60864415 60864993 + 0.5 NA Intergenic Intergenic -57915 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 171.75-29 chr15 63311705 63312382 + 0.5 NA Intergenic L1MCb|LINE|L1 34438 NM_031301 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 184.25-33 chr2 157320401 157320806 + 0.5 NA 3' UTR (NM_001304345, exon 4 of 4) 3' UTR (NM_001304345, exon 4 of 4) 5221 NM_001304346 57471 Hs.443894 NM_020711 ENSG00000136541 ERMN JN|KIAA1189 ermin protein-coding 175.5-17 chr11 117579162 117579847 + 0.5 NA intron (NM_020693, intron 3 of 32) L2a|LINE|L2 217712 NM_001367904 57453 Hs.659513 NM_020693 ENSG00000177103 DSCAML1 DSCAM2 DS cell adhesion molecule like 1 protein-coding 180.5-25 chr16 52954372 52954774 + 0.5 NA Intergenic Intergenic 98300 NR_136518 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 165-11 chr10 121529050 121529533 + 0.5 NA intron (NM_001320654, intron 2 of 16) AluSz|SINE|Alu 2023 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 182.25-32 chr20 10615893 10616400 + 0.5 NA intron (NM_001009608, intron 6 of 7) L2a|LINE|L2 33549 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 197.75-41 chr3 68385766 68386359 + 0.5 NA intron (NM_001252216, intron 2 of 4) MER58A|DNA|hAT-Charlie -114575 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 150.25-15 chr10 68947398 68947785 + 0.5 NA TTS (NM_024045) TTS (NM_024045) -8579 NM_004728 9188 Hs.223141 NM_004728 ENSG00000165732 DDX21 GUA|GURDB|RH-II/GU|RH-II/GuA DExD-box helicase 21 protein-coding 151.5-88 chr7 22766011 22766456 + 0.5 NA Intergenic L1MC1|LINE|L1 -38613 NR_131935 541472 Hs.512234 NR_131935 ENSG00000179428 LOC541472 - uncharacterized LOC541472 ncRNA 177.25-59 chr5 63266807 63267254 + 0.5 NA Intergenic L1ME3G|LINE|L1 688211 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 152.5-97 chr6 109151379 109151958 + 0.5 NA intron (NM_001083535, intron 6 of 12) L1MEc|LINE|L1 -14163 NR_152435 221262 Hs.373914 NM_173671 ENSG00000203799 CCDC162P C6orf183|C6orf184|C6orf185|CCDC162 coiled-coil domain containing 162, pseudogene pseudo 153.25-42 chr15 62370599 62371020 + 0.5 NA Intergenic AluSx|SINE|Alu 27780 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 148.25-94 chr8 87481073 87481621 + 0.5 NA Intergenic MamGypLTR1a|LTR|Gypsy 392668 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 153.75-3 chr1 188354730 188355220 + 0.5 NA Intergenic Intergenic 911347 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 152.75-80 chr5 81894360 81894684 + 0.5 NA Intergenic Tigger13a|DNA|TcMar-Tigger -77501 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 170.75-30 chr2 39682096 39682560 + 0.5 NA intron (NM_152390, intron 1 of 3) Tigger15a|DNA|TcMar-Tigger 16411 NM_152390 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 209.5-9 chr14 21689862 21690629 + 0.5 NA Intergenic Intergenic -19228 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 163.25-53 chr4 38423420 38424064 + 0.5 NA intron (NR_110951, intron 7 of 7) intron (NR_110951, intron 7 of 7) 56828 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 163.25-28 chr14 52333601 52334211 + 0.5 NA Intergenic MER50|LTR|ERV1 19594 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 155.25-41 chr2 54476284 54476806 + 0.5 NA intron (NM_003128, intron 1 of 35) MER103C|DNA|hAT-Charlie 20218 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 190.5-9 chr10 63509840 63510359 + 0.5 NA intron (NM_001322258, intron 1 of 24) AluY|SINE|Alu -11302 NM_001001330 221035 Hs.499833 NM_001001330 ENSG00000165476 REEP3 C10orf74|Yip2b receptor accessory protein 3 protein-coding 147.75-14 chr10 16502314 16502672 + 0.5 NA intron (NM_001261837, intron 4 of 4) intron (NM_001261837, intron 4 of 4) 19386 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 153 chr1 65480664 65481170 + 0.5 NA intron (NM_001003679, intron 2 of 19) intron (NM_001003679, intron 2 of 19) -44734 NM_001198687 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 166.75-67 chr5 17797503 17797935 + 0.5 NA Intergenic Intergenic -9555 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 157.5-93 chr6 81526559 81527138 + 0.5 NA Intergenic L2b|LINE|L2 225833 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 157.25-88 chr7 41043654 41044179 + 0.5 NA Intergenic (ATTTT)n|Simple_repeat|Simple_repeat -57688 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 180.25-42 chr3 14161681 14162252 + 0.5 NA intron (NM_001354726, intron 6 of 14) L1MB5|LINE|L1 16635 NR_148950 7508 Hs.475538 NM_004628 ENSG00000154767 XPC RAD4|XP3|XPCC|p125 XPC complex subunit, DNA damage recognition and repair factor protein-coding 154.25-67 chr6 47492197 47492534 + 0.5 NA intron (NM_012120, intron 1 of 17) AluJr|SINE|Alu 14576 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 189.75-10 chr1 109671654 109672088 + 0.5 NA intron (NM_001142368, intron 7 of 8) AluSx1|SINE|Alu 3814 NM_000848 2946 Hs.279837 NM_000848 ENSG00000213366 GSTM2 GST4|GSTM|GSTM2-2|GTHMUS glutathione S-transferase mu 2 protein-coding 183.5-69 chr7 94916087 94916579 + 0.5 NA intron (NM_017650, intron 2 of 15) MER5A1|DNA|hAT-Charlie 6435 NM_001166163 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 205-44 chr6 76207997 76208602 + 0.5 NA Intergenic Intergenic -135621 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 231-3 chr1 246774461 246774999 + 0.5 NA Intergenic L1ME3B|LINE|L1 -14887 NR_015422 149134 Hs.720494 NM_207326 LINC01341 - long intergenic non-protein coding RNA 1341 ncRNA 160.5-44 chr17 78711537 78711955 + 0.5 NA intron (NM_004762, intron 1 of 12) intron (NM_004762, intron 1 of 12) 5286 NM_001292019 9267 Hs.191215 NM_004762 ENSG00000108669 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 151.25-78 chr6 24076679 24077108 + 0.5 NA Intergenic L1PB3|LINE|L1 -49322 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 168.5-44 chr19 31198298 31198650 + 0.5 NA intron (NR_147209, intron 3 of 4) L1MC1|LINE|L1 30964 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 237.5-2 chr11 34106379 34107089 + 0.5 NA intron (NM_001144030, intron 1 of 26) intron (NM_001144030, intron 1 of 26) 1105 NM_001144030 55226 Hs.577281 NM_024662 ENSG00000135372 NAT10 ALP|Kre33|NET43 N-acetyltransferase 10 protein-coding 159.5-101 chr8 134147321 134147886 + 0.5 NA Intergenic Intergenic 261107 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 200.5-43 chr4 33657641 33658122 + 0.5 NA Intergenic MLT1E|LTR|ERVL-MaLR 382012 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 170.75-46 chr4 33301041 33301508 + 0.5 NA Intergenic Intergenic 738619 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 167.75-99 chr8 139602404 139603005 + 0.5 NA intron (NR_104210, intron 3 of 3) Helitron3Na_Mam|RC|Helitron 100419 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 177-23 chr2 1070240 1070737 + 0.5 NA intron (NM_018968, intron 1 of 16) MIRb|SINE|MIR -119096 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 252.75-23 chr4 64736067 64736813 + 0.5 NA Intergenic Intergenic 268060 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 157.25-100 chr8 79926784 79927218 + 0.5 NA intron (NM_014018, intron 2 of 2) intron (NM_014018, intron 2 of 2) -55264 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 173-45 chr22 25777525 25778110 + 0.5 NA intron (NM_001318245, intron 8 of 43) intron (NM_001318245, intron 8 of 43) 35629 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 169.25-15 chr15 86769454 86770129 + 0.5 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -163089 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 146.75-21 chr11 90216550 90217058 + 0.5 NA intron (NM_012124, intron 2 of 10) intron (NM_012124, intron 2 of 10) 6245 NM_012124 26973 Hs.22857 NM_012124 ENSG00000110172 CHORDC1 CHP1 cysteine and histidine rich domain containing 1 protein-coding 191.5-21 chr14 52404107 52404777 + 0.5 NA Intergenic L2a|LINE|L2 90130 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 152-60 chr4 58861820 58862188 + 0.5 NA Intergenic L1M5|LINE|L1 -122278 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 199.25-40 chr22 25392044 25392656 + 0.5 NA Intergenic Intergenic -10773 NM_001135772 91355 Hs.634058 NM_182492 ENSG00000100068 LRP5L - LDL receptor related protein 5 like protein-coding 170.5-82 chr9 105682634 105683261 + 0.5 NA Intergenic L1ME3A|LINE|L1 -11594 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 185.5-60 chr5 83169070 83169609 + 0.5 NA intron (NM_001318012, intron 3 of 7) intron (NM_001318012, intron 3 of 7) 91792 NM_001318012 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 168.75-79 chr4 136338578 136339187 + 0.5 NA Intergenic L1PA15|LINE|L1 -425202 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 159.25-26 chr15 64144807 64145304 + 0.5 NA TTS (NM_148955) TTS (NM_148955) -6676 NM_024798 79856 Hs.744250 NM_024798 ENSG00000157734 SNX22 - sorting nexin 22 protein-coding 165.25-25 chr2 125105324 125105983 + 0.5 NA Intergenic L1MC3|LINE|L1 1012332 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 197.5-42 chr3 88343705 88344406 + 0.5 NA intron (NM_001368167, intron 2 of 2) intron (NM_001368167, intron 2 of 2) 5599 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 273.25-9 chr16 34581582 34582262 + 0.5 NA Intergenic Intergenic -200442 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 243.5-6 chr12 83884009 83884625 + 0.5 NA Intergenic MER46C|DNA|TcMar-Tigger 1028482 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 173-81 chr7 136618081 136618619 + 0.5 NA Intergenic Intergenic -250302 NM_001006627 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 146.5-80 chr4 102174846 102175158 + 0.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR 149310 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 155 chr1 7325706 7326189 + 0.5 NA intron (NM_001349608, intron 4 of 21) AluSz|SINE|Alu 63807 NR_146199 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 188.75-6 chr1 215394563 215395268 + 0.5 NA Intergenic LTR12D|LTR|ERV1 -172389 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 159.5-88 chr7 84396184 84396726 + 0.5 NA Intergenic L1MEd|LINE|L1 -136021 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 158.25-50 chr2 43453492 43453816 + 0.5 NA intron (NM_001083953, intron 26 of 37) intron (NM_001083953, intron 26 of 37) 142320 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 153.25-62 chr2 73763006 73763375 + 0.5 NA intron (NM_003584, intron 8 of 8) intron (NM_003584, intron 8 of 8) 16967 NM_003584 8446 Hs.14611 NM_003584 ENSG00000144048 DUSP11 PIR1 dual specificity phosphatase 11 protein-coding 208.75-14 chr17 60682166 60682655 + 0.5 NA intron (NM_001330413, intron 2 of 25) intron (NM_001330413, intron 2 of 25) 4559 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 168.5-4 chr1 84867574 84868186 + 0.5 NA intron (NM_012152, intron 1 of 2) L1ME4a|LINE|L1 25326 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 152.5-65 chr22 26046093 26046666 + 0.5 NA Intergenic Intergenic -123083 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 182.5-11 chr11 134316324 134316873 + 0.5 NA intron (NM_001080407, intron 18 of 19) intron (NM_001080407, intron 18 of 19) -15276 NM_138342 89944 Hs.436178 NM_138342 ENSG00000149328 GLB1L2 MST114|MSTP114 galactosidase beta 1 like 2 protein-coding 187-48 chr5 126179777 126180375 + 0.5 NA intron (NR_105042, intron 1 of 3) MLT1J-int|LTR|ERVL-MaLR 499 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 154.75-84 chr5 95816121 95816560 + 0.5 NA intron (NM_002064, intron 2 of 2) intron (NM_002064, intron 2 of 2) 6386 NM_001243658 2745 Hs.28988 NM_002064 ENSG00000173221 GLRX GRX|GRX1 glutaredoxin protein-coding 171-69 chr8 83429923 83430365 + 0.5 NA Intergenic Intergenic 26386 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 151.25-104 chr9 34265078 34265617 + 0.5 NA intron (NM_194313, intron 8 of 12) AluJr|SINE|Alu 63921 NM_194313 347240 Hs.710246 NM_194313 ENSG00000186638 KIF24 C9orf48|bA571F15.4 kinesin family member 24 protein-coding 145.75-104 chr6 112691670 112692227 + 0.5 NA Intergenic Intergenic 344618 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 166.75-99 chr9 75469116 75469644 + 0.5 NA Intergenic Intergenic 380866 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 168-36 chr2 71298083 71298631 + 0.5 NA Intergenic Penelope1_Vert|LINE|Penelope -33398 NM_001252612 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 169.25-20 chr17 13573374 13574030 + 0.5 NA intron (NM_006042, intron 1 of 1) MLT1A|LTR|ERVL-MaLR 28227 NM_006042 9955 Hs.462270 NM_006042 ENSG00000153976 HS3ST3A1 3-OST-3A|3OST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 protein-coding 298.25-10 chrX 79127576 79128199 + 0.5 NA Intergenic L1MB8|LINE|L1 -43085 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 172.75-78 chrX 58300060 58300475 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -389634 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 204.5-42 chr7 83240662 83241473 + 0.5 NA Intergenic Intergenic -78183 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 187-30 chr3 48175879 48176387 + 0.5 NA intron (NM_201567, intron 7 of 13) AluSx|SINE|Alu 12284 NM_201567 993 Hs.437705 NM_001789 ENSG00000164045 CDC25A CDC25A2 cell division cycle 25A protein-coding 204.25 chr1 43246367 43246936 + 0.5 NA intron (NM_001195831, intron 23 of 23) L1M3|LINE|L1 -23332 NM_001320244 128218 Hs.104476 NM_144626 ENSG00000179178 TMEM125 - transmembrane protein 125 protein-coding 156.75-99 chr8 90059248 90059608 + 0.5 NA 3' UTR (NM_004929, exon 11 of 11) 3' UTR (NM_004929, exon 11 of 11) 23451 NM_001366795 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 189.5-8 chr10 41906067 41906779 + 0.5 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 461622 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 164-76 chr7 27121437 27121939 + 0.5 NA promoter-TSS (NR_122069) promoter-TSS (NR_122069) -231 NR_122069 285943 Hs.714774 NR_122069 HOXA-AS2 HOXA3as HOXA cluster antisense RNA 2 ncRNA 153.75-80 chr7 52921769 52922305 + 0.5 NA Intergenic Intergenic -113596 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 147.5-54 chr21 30303486 30304011 + 0.5 NA Intergenic L1MC3|LINE|L1 -14234 NM_001128598 100131902 Hs.580882 NM_001128598 ENSG00000232263 KRTAP25-1 KAP25.1 keratin associated protein 25-1 protein-coding 152.5-58 chr2 228812533 228813117 + 0.5 NA Intergenic L1MA1|LINE|L1 -201430 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 187.5-64 chr7 49451484 49452135 + 0.5 NA Intergenic Intergenic -321829 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 182.75-71 chr8 53742544 53743130 + 0.5 NA intron (NM_213620, intron 13 of 13) intron (NM_213620, intron 13 of 13) 100205 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 183-2 chr1 88856345 88856926 + 0.5 NA intron (NM_001514, intron 6 of 6) intron (NM_001514, intron 6 of 6) 34932 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 188-32 chr2 149119850 149120326 + 0.5 NA intron (NM_001317002, intron 2 of 7) intron (NM_001317002, intron 2 of 7) 1914 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 154-51 chr2 43722835 43723307 + 0.5 NA intron (NM_172069, intron 16 of 29) intron (NM_172069, intron 16 of 29) -46642 NM_001101330 728819 NM_001101330 ENSG00000223658 C1GALT1C1L - C1GALT1 specific chaperone 1 like protein-coding 238.5-8 chr10 91256515 91257274 + 0.5 NA intron (NM_001256549, intron 6 of 9) L1MB7|LINE|L1 36231 NM_032373 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 160.25-82 chr9 97298537 97299054 + 0.5 NA intron (NR_036528, intron 14 of 50) L1ME3A|LINE|L1 -8542 NM_001348010 100499483 Hs.435629 NM_020893 ENSG00000197816 CCDC180 C9orf174 coiled-coil domain containing 180 protein-coding 169.5-71 chr4 151555447 151555942 + 0.5 NA intron (NM_001109977, intron 3 of 13) intron (NM_001109977, intron 3 of 13) 146518 NM_001348694 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160 member A1 protein-coding 195.75-50 chr4 62800851 62801553 + 0.5 NA Intergenic L1PA15-16|LINE|L1 -639437 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 177.5-28 chr2 32510689 32511146 + 0.5 NA intron (NM_016252, intron 53 of 73) intron (NM_016252, intron 53 of 73) -21236 NR_030285 693143 NR_030285 ENSG00000207653 MIR558 MIRN558|hsa-mir-558 microRNA 558 ncRNA 160.75-52 chr18 69099377 69099930 + 0.5 NA Intergenic Intergenic -301235 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 183.25-58 chr5 9327965 9328395 + 0.5 NA intron (NM_003966, intron 4 of 22) intron (NM_003966, intron 4 of 22) -183153 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 179-36 chr21 28362905 28363454 + 0.5 NA Intergenic L1MB1|LINE|L1 -134512 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 198.25-41 chr5 64551808 64552249 + 0.5 NA intron (NM_001029875, intron 2 of 5) intron (NM_001029875, intron 2 of 5) -23622 NM_001271891 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 164.25-83 chr7 108144313 108144774 + 0.5 NA Intergenic L2a|LINE|L2 -14182 NM_001318048 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 179.5-21 chr14 56175205 56175762 + 0.5 NA intron (NM_021255, intron 1 of 5) L2b|LINE|L2 57072 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 173.75-19 chr12 87809471 87809995 + 0.5 NA Intergenic Intergenic -25022 NR_033410 400058 Hs.572212 NR_033410 MKRN9P MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3 makorin ring finger protein 9, pseudogene pseudo 191.75-26 chr15 57750442 57750923 + 0.5 NA Intergenic Intergenic 43968 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 157.75-87 chr5 23078572 23079140 + 0.5 NA Intergenic Intergenic -225512 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 174.75-16 chr11 114041962 114042485 + 0.5 NA Intergenic Intergenic -17488 NM_006006 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 154.25-54 chr3 104189828 104190206 + 0.5 NA Intergenic Intergenic -665901 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 163.75-26 chr18 1307973 1308353 + 0.5 NA intron (NR_023926, intron 2 of 5) THE1B|LTR|ERVL-MaLR 51466 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 174.5-85 chr8 109559365 109559914 + 0.5 NA intron (NM_198120, intron 5 of 6) AluJr|SINE|Alu 19013 NM_001278938 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 196.5-53 chr7 94771142 94771666 + 0.5 NA Intergenic L1MC3|LINE|L1 115034 NM_001172438 23089 Hs.147492 NM_015068 ENSG00000242265 PEG10 EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3|RTL2|SIRH1 paternally expressed 10 protein-coding 169.5-99 chr8 142262651 142263186 + 0.5 NA intron (NM_001366901, intron 12 of 13) L1MEd|LINE|L1 64562 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 203-36 chr5 80849183 80849741 + 0.5 NA intron (NM_002439, intron 20 of 23) THE1B-int|LTR|ERVL-MaLR -110901 NM_006909 5924 Hs.162129 NM_006909 ENSG00000113319 RASGRF2 GRF2|RAS-GRF2 Ras protein specific guanine nucleotide releasing factor 2 protein-coding 150.25-10 chr1 240426700 240427157 + 0.5 NA intron (NM_020066, intron 15 of 17) AluSx|SINE|Alu 185227 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 161.5-86 chr6 126172986 126173466 + 0.5 NA Intergenic Intergenic -166563 NM_001286524 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 207.5-24 chr2 107337218 107337732 + 0.5 NA intron (NR_049853, intron 1 of 3) L2|LINE|L2 12050 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 174.5-30 chr15 93567405 93567922 + 0.5 NA Intergenic L1ME4b|LINE|L1 -288897 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 158.5-17 chr12 116063283 116063774 + 0.5 NA intron (NM_015335, intron 4 of 30) AluJo|SINE|Alu 85126 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 158.5-44 chr2 105758838 105759436 + 0.5 NA intron (NM_003581, intron 1 of 4) intron (NM_003581, intron 1 of 4) 14074 NM_001004722 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 170.75-9 chr11 116190421 116190907 + 0.5 NA Intergenic Intergenic -430464 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 186.5-72 chr8 78422342 78422797 + 0.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -93771 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 236.25-36 chr8 124551422 124552245 + 0.5 NA 3' UTR (NM_001363302, exon 13 of 13) 3' UTR (NM_001363302, exon 13 of 13) 12710 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 159.25-71 chr7 49062958 49063536 + 0.5 NA Intergenic L2b|LINE|L2 138700 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 181.75-11 chr10 63280178 63280644 + 0.5 NA intron (NM_001322258, intron 2 of 24) AluSc8|SINE|Alu -11168 NM_001318153 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 255.75-6 chr14 22321389 22322276 + 0.5 NA Intergenic HAL1|LINE|L1 110921 NR_148362 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 151.25-100 chr8 133821434 133822010 + 0.5 NA Intergenic MSTA|LTR|ERVL-MaLR -44370 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 171.5-30 chr14 57065187 57065621 + 0.5 NA Intergenic Intergenic 203501 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 152.75-92 chr7 92793649 92794182 + 0.5 NA intron (NM_001259, intron 2 of 7) L1MB8|LINE|L1 40044 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 156.75-56 chr20 21394846 21395248 + 0.5 NA TTS (NM_033176) TTS (NM_033176) 2479 NM_033176 644524 NM_033176 ENSG00000125816 NKX2-4 NKX2.4|NKX2D NK2 homeobox 4 protein-coding 150.25-14 chr10 46544687 46545285 + 0.5 NA 3' UTR (NM_014696, exon 3 of 3) 3' UTR (NM_014696, exon 3 of 3) 11085 NM_014696 9721 Hs.523375 NM_014696 ENSG00000204175 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 152.25-77 chr5 18337520 18338093 + 0.5 NA Intergenic Intergenic 530532 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 151-12 chr11 65760278 65760744 + 0.5 NA Intergenic Intergenic 20465 NM_138368 91056 Hs.591957 NM_138368 ENSG00000254470 AP5B1 AP-5|PP1030 adaptor related protein complex 5 subunit beta 1 protein-coding 165-80 chr7 28681854 28682456 + 0.5 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -3978 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 171.75-53 chr4 32196939 32197434 + 0.5 NA Intergenic L1MB8|LINE|L1 -153852 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 163.25-81 chr8 80896963 80897446 + 0.5 NA Intergenic Intergenic -22423 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 171-30 chr19 52148067 52148602 + 0.5 NA Intergenic MER4-int|LTR|ERV1 -8396 NR_135823 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 229.5-37 chr7 3864853 3865544 + 0.5 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -264487 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 226.5-24 chr6 36205214 36206021 + 0.5 NA intron (NM_015695, intron 3 of 12) intron (NM_015695, intron 3 of 12) 8873 NM_015695 27154 Hs.520096 NM_015695 ENSG00000096070 BRPF3 - bromodomain and PHD finger containing 3 protein-coding 267.25-8 chr5 155154197 155154910 + 0.5 NA Intergenic MLT1H2|LTR|ERVL-MaLR 140798 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 181.5-54 chr5 27250262 27250885 + 0.5 NA Intergenic Intergenic -211987 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 151.25 chr1 65625437 65625907 + 0.5 NA intron (NM_002303, intron 19 of 19) intron (NM_002303, intron 19 of 19) 99983 NM_001198689 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 184-19 chr17 40827410 40827893 + 0.5 NA intron (NR_160886, intron 1 of 2) MIR|SINE|MIR -5037 NM_000421 3858 Hs.99936 NM_000421 ENSG00000186395 KRT10 BCIE|BIE|CK10|EHK|K10|KPP keratin 10 protein-coding 150.5-2 chr1 45615615 45616003 + 0.5 NA intron (NM_002482, intron 11 of 14) Tigger4a|DNA|TcMar-Tigger 8245 NM_001114938 149483 Hs.18912 NM_152500 ENSG00000159588 CCDC17 - coiled-coil domain containing 17 protein-coding 221-29 chr5 153058565 153059206 + 0.5 NA Intergenic Intergenic -86536 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 169.5-81 chr7 733379 733783 + 0.5 NA intron (NR_075098, intron 2 of 12) AluY|SINE|Alu -5905 NM_001164759 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 147.75-99 chr7 25141921 25142386 + 0.5 NA intron (NM_138811, intron 9 of 9) intron (NM_138811, intron 9 of 9) -16792 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 174.25-9 chr10 51268741 51269290 + 0.5 NA intron (NM_001098512, intron 2 of 17) L1PB2|LINE|L1 -30558 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 177.75-80 chrX 94393723 94394100 + 0.5 NA Intergenic L1MA2|LINE|L1 669315 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 146.5-20 chr13 20446984 20447303 + 0.5 NA intron (NM_015974, intron 3 of 7) intron (NM_015974, intron 3 of 7) -13297 NR_039721 100616304 NR_039721 ENSG00000263978 MIR4499 - microRNA 4499 ncRNA 185.25-18 chr13 68637805 68638296 + 0.5 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 247275 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 174.5-42 chr2 158924758 158925311 + 0.5 NA Intergenic L1MD|LINE|L1 -43600 NM_001350065 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 206.25-32 chr4 110994857 110995313 + 0.5 NA Intergenic Intergenic -134438 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 211.5-15 chr13 92958773 92959423 + 0.5 NA Intergenic Intergenic -86243 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 192-38 chr3 66087528 66088151 + 0.5 NA Intergenic AluJb|SINE|Alu -45771 NM_173471 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 173.25-39 chr2 211483737 211484417 + 0.5 NA intron (NM_001042599, intron 20 of 26) L1MEc|LINE|L1 866506 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 186-10 chr14 73447206 73447942 + 0.5 NA intron (NM_001005743, intron 1 of 12) FLAM_C|SINE|Alu 11006 NM_003744 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 152.5-81 chr4 86781279 86781670 + 0.5 NA intron (NM_080685, intron 36 of 47) intron (NM_080685, intron 36 of 47) 67910 NM_197965 345274 Hs.452996 NM_197965 ENSG00000145283 SLC10A6 SOAT solute carrier family 10 member 6 protein-coding 161-25 chr13 44093738 44094148 + 0.5 NA Intergenic Intergenic -16606 NR_104065 101929212 Hs.534877 NR_104064 ENSG00000227258 SMIM2-AS1 C13orf44-AS1|C3orf81-AS1 SMIM2 antisense RNA 1 ncRNA 219.25-31 chr22 24742524 24743042 + 0.5 NA intron (NM_001008496, intron 12 of 20) L1PB1|LINE|L1 -21718 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 146.75-103 chr7 41166510 41167068 + 0.5 NA Intergenic Intergenic 65185 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 153.25-12 chr1 104716291 104716877 + 0.5 NA Intergenic L1MA4A|LINE|L1 643561 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 210.25-15 chr18 5589595 5590332 + 0.5 NA intron (NM_001281535, intron 3 of 21) intron (NM_001281535, intron 3 of 21) 39028 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 185.75-70 chr6 67896795 67897342 + 0.5 NA Intergenic (TAT)n|Simple_repeat|Simple_repeat -158283 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 207.5-7 chr10 60165067 60165574 + 0.5 NA intron (NM_001204404, intron 23 of 43) intron (NM_001204404, intron 23 of 43) -24304 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 166.5-6 chr10 52105424 52105792 + 0.5 NA intron (NM_001098512, intron 7 of 17) intron (NM_001098512, intron 7 of 17) 208520 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 158.25-59 chr20 46856400 46856978 + 0.5 NA Intergenic L1ME4a|LINE|L1 -37935 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 152.5-41 chr17 65942182 65942492 + 0.5 NA intron (NM_001353129, intron 18 of 26) MER1B|DNA|hAT-Charlie -115794 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 165.75-8 chr1 111634577 111635106 + 0.5 NA intron (NM_001010935, intron 2 of 8) AluSc5|SINE|Alu -14443 NR_160737 107985184 NR_160737 LOC107985184 - uncharacterized LOC107985184 ncRNA 315.5-11 chr8 101524244 101525143 + 0.5 NA intron (NM_001330593, intron 1 of 15) L1MEd|LINE|L1 32254 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 154-93 chr6 133794052 133794597 + 0.5 NA intron (NR_109982, intron 2 of 8) L1PREC2|LINE|L1 -26823 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 148.75-89 chr6 66204117 66204574 + 0.5 NA Intergenic L1MC5a|LINE|L1 416466 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 146.75-34 chr16 7541393 7541959 + 0.5 NA intron (NM_145893, intron 2 of 13) intron (NM_145893, intron 2 of 13) 208831 NM_145892 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 173.5-56 chr3 147224753 147225303 + 0.5 NA Intergenic L1ME1|LINE|L1 167402 NR_040762 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 164.5-83 chr6 145596282 145596851 + 0.5 NA Intergenic HAL1|LINE|L1 90311 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 155.75-16 chr11 2203021 2203421 + 0.5 NA Intergenic Intergenic 30158 NR_039834 100616126 NR_039834 ENSG00000265258 MIR4686 - microRNA 4686 ncRNA 157-50 chr2 104458484 104458946 + 0.5 NA intron (NR_015399, intron 1 of 3) L1MD2|LINE|L1 24368 NR_015399 150568 Hs.107284 NR_015399 ENSG00000235597 LINC01102 - long intergenic non-protein coding RNA 1102 ncRNA 259.25-13 chr8 83257714 83258634 + 0.5 NA Intergenic Intergenic -145584 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 156.75-37 chr14 103667849 103668276 + 0.5 NA intron (NM_182923, intron 5 of 14) MIRb|SINE|MIR 38874 NM_005552 3831 Hs.20107 NM_005552 ENSG00000126214 KLC1 KLC|KNS2|KNS2A kinesin light chain 1 protein-coding 161.25-37 chr2 41072203 41072639 + 0.5 NA Intergenic MER2|DNA|TcMar-Tigger -559986 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 158.5-2 chr1 174135159 174135610 + 0.5 NA intron (NR_121197, intron 3 of 3) L2c|LINE|L2 23903 NR_121197 102724601 Hs.563791 NR_121197 ENSG00000227373 RABGAP1L-DT - RABGAP1L divergent transcript ncRNA 153.5-109 chr8 92388038 92388400 + 0.5 NA Intergenic MIRb|SINE|MIR 267275 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 181.25-8 chr10 127723805 127724418 + 0.5 NA Intergenic L1MA1|LINE|L1 -13074 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 147.5-33 chr17 74626051 74626470 + 0.5 NA TTS (NR_158152) TTS (NR_158152) -2522 NM_181449 342510 Hs.158954 NM_181449 ENSG00000186407 CD300E CD300LE|CLM-2|CLM2|CMRF35-A5|IREM-2|IREM2|PIgR-2|PIgR2 CD300e molecule protein-coding 150.25-67 chr3 177803762 177804269 + 0.5 NA Intergenic (TGTTAT)n|Simple_repeat|Simple_repeat -12850 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 149-96 chr7 132961451 132961910 + 0.5 NA intron (NM_001317177, intron 4 of 8) L1MA9|LINE|L1 73235 NR_037427 100500804 NR_037427 ENSG00000284135 MIR3654 - microRNA 3654 ncRNA 219.25-51 chr8 138340443 138341176 + 0.5 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 156452 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 214-33 chr6 162183998 162184584 + 0.5 NA intron (NM_004562, intron 4 of 11) intron (NM_004562, intron 4 of 11) -542841 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 210-33 chr20 50919034 50919740 + 0.5 NA intron (NM_001347511, intron 1 of 4) AluJr|SINE|Alu -9596 NM_001282532 23394 Hs.293736 NM_015339 ENSG00000101126 ADNP ADNP1|HVDAS|MRD28 activity dependent neuroprotector homeobox protein-coding 261-12 chr2 78212944 78213655 + 0.5 NA intron (NR_110288, intron 1 of 3) L1MA3|LINE|L1 77432 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 184-53 chr7 35443558 35444284 + 0.5 NA Intergenic Intergenic 130066 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 158-94 chr9 27995734 27996148 + 0.5 NA intron (NM_001354574, intron 5 of 5) L1MA4|LINE|L1 -422075 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 204.5-34 chr5 145361348 145361974 + 0.5 NA Intergenic Intergenic 473681 NM_138492 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 181.25-29 chr2 195285418 195286112 + 0.5 NA Intergenic Intergenic -371193 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 184.5-48 chr2 194615742 194616307 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -114571 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 210-34 chr21 28970311 28970758 + 0.5 NA intron (NM_015565, intron 8 of 29) intron (NM_015565, intron 8 of 29) 22343 NM_001320766 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 175.5-15 chr11 80488307 80489006 + 0.5 NA Intergenic Intergenic 274147 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 206-18 chr2 147733684 147734316 + 0.5 NA Intergenic L1MA4|LINE|L1 -110517 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 185.5-50 chr4 97131648 97132268 + 0.5 NA Intergenic Intergenic -234968 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 219-23 chr6 45830505 45831210 + 0.5 NA Intergenic Intergenic 106740 NR_045674 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 154.75-5 chr1 171655716 171656187 + 0.5 NA Intergenic Intergenic -3263 NM_000261 4653 Hs.436037 NM_000261 ENSG00000034971 MYOC GLC1A|GPOA|JOAG|JOAG1|TIGR myocilin protein-coding 192-31 chr2 164792507 164793133 + 0.5 NA intron (NM_001365670, intron 2 of 13) intron (NM_001365670, intron 2 of 13) -47929 NR_110574 101929633 Hs.570267 NR_110574 LOC101929633 - uncharacterized LOC101929633 ncRNA 149.25-17 chr12 10226902 10227330 + 0.5 NA Intergenic Intergenic -11845 NM_001351060 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 175-41 chr5 90354726 90355286 + 0.5 NA Intergenic Intergenic 54780 NM_001297768 1070 Hs.591767 NM_004365 ENSG00000153140 CETN3 CDC31|CEN3 centrin 3 protein-coding 150.75-37 chr2 32713322 32713814 + 0.5 NA intron (NM_017735, intron 10 of 19) intron (NM_017735, intron 10 of 19) 78313 NR_039922 100616219 NR_039922 ENSG00000265057 MIR4765 - microRNA 4765 ncRNA 145.75-53 chr2 70577974 70578538 + 0.5 NA Intergenic Zaphod3|DNA|hAT-Tip100 -24430 NM_001099691 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 152.75-68 chr4 121868725 121869194 + 0.5 NA intron (NM_176824, intron 1 of 18) L2|LINE|L2 1515 NM_176824 55212 Hs.591694 NM_018190 ENSG00000138686 BBS7 BBS2L1 Bardet-Biedl syndrome 7 protein-coding 185.5-13 chr10 65100340 65100828 + 0.5 NA Intergenic L1MC3|LINE|L1 -176066 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 242.5-6 chr10 68062649 68063508 + 0.5 NA intron (NM_001278185, intron 3 of 23) intron (NM_001278185, intron 3 of 23) 12205 NM_001278186 26091 Hs.51891 NM_015601 ENSG00000148634 HERC4 - HECT and RLD domain containing E3 ubiquitin protein ligase 4 protein-coding 207.75-28 chr3 133879047 133879864 + 0.5 NA intron (NM_016577, intron 1 of 7) intron (NM_016577, intron 1 of 7) 16392 NM_001363953 51560 Hs.715344 NM_016577 ENSG00000154917 RAB6B - RAB6B, member RAS oncogene family protein-coding 195-47 chr8 127154813 127155376 + 0.5 NA Intergenic L2c|LINE|L2 42533 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 179.75-17 chr15 54732022 54732599 + 0.5 NA Intergenic Intergenic -324437 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 259.5-11 chr5 10255726 10256376 + 0.5 NA exon (NM_001306153, exon 4 of 11) exon (NM_001306153, exon 4 of 11) 5514 NM_001306156 22948 Hs.1600 NM_012073 ENSG00000150753 CCT5 CCT-epsilon|CCTE|HEL-S-69|PNAS-102|TCP-1-epsilon chaperonin containing TCP1 subunit 5 protein-coding 152.75-14 chr10 5439711 5440152 + 0.5 NA intron (NM_001047160, intron 3 of 11) ERVL-E-int|LTR|ERVL -6620 NR_073040 10276 Hs.25155 NM_005863 ENSG00000173848 NET1 ARHGEF8|NET1A neuroepithelial cell transforming 1 protein-coding 154.5-40 chr18 7886073 7886619 + 0.5 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 319030 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 160-40 chr2 48332456 48332869 + 0.5 NA intron (NM_002158, intron 2 of 6) intron (NM_002158, intron 2 of 6) 17980 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 176.75-38 chr2 73570446 73570961 + 0.5 NA intron (NM_015120, intron 15 of 22) L2|LINE|L2 71719 NM_003960 9027 Hs.14637 NM_003960 ENSG00000144035 NAT8 ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510 N-acetyltransferase 8 (putative) protein-coding 216-10 chr11 78398763 78399381 + 0.5 NA intron (NM_080491, intron 1 of 9) L1MC5|LINE|L1 18748 NM_080491 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 186.25-14 chr14 47141624 47142150 + 0.5 NA intron (NM_001113498, intron 4 of 16) L1MA4A|LINE|L1 201359 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 169.25-44 chr4 110333284 110333900 + 0.5 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat -134977 NM_001130721 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 156.5-39 chr16 69656695 69657312 + 0.5 NA intron (NM_173215, intron 6 of 13) intron (NM_173215, intron 6 of 13) 51672 NR_145753 109617018 NR_145753 SNORD13H - small nucleolar RNA, C/D box 13H snoRNA 153.25-97 chr5 149559262 149559769 + 0.5 NA Intergenic L1ME4a|LINE|L1 -8076 NM_001892 1452 Hs.529862 NM_001892 ENSG00000113712 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1 alpha 1 protein-coding 171.5-96 chr8 79676509 79677151 + 0.5 NA Intergenic Intergenic 65713 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 181.25-21 chr18 76901454 76902162 + 0.5 NA intron (NM_001306089, intron 11 of 30) intron (NM_001306089, intron 11 of 30) 77648 NM_007345 7776 Hs.719137 NM_007345 ENSG00000130856 ZNF236 ZNF236A|ZNF236B zinc finger protein 236 protein-coding 158.5-16 chr12 54762506 54762996 + 0.5 NA Intergenic Intergenic -91765 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 274-12 chr8 72078579 72079430 + 0.5 NA Intergenic L1ME1|LINE|L1 -3420 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 163.25-43 chr2 190807204 190807695 + 0.5 NA Intergenic Intergenic -73372 NM_014905 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 147-100 chr6 71060746 71061164 + 0.5 NA Intergenic Intergenic -103895 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 210.25-36 chr6 70201539 70202115 + 0.5 NA intron (NM_001858, intron 49 of 50) intron (NM_001858, intron 49 of 50) 81370 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 150-17 chr11 37521162 37521590 + 0.5 NA Intergenic L1MA2|LINE|L1 -417225 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 195.25-52 chr7 53964631 53965147 + 0.5 NA Intergenic Intergenic -152958 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 146.75-68 chr3 126801 127352 + 0.5 NA Intergenic L2c|LINE|L2 -69520 NM_001253387 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 249.25-22 chr7 132341391 132342025 + 0.5 NA intron (NM_020911, intron 3 of 31) intron (NM_020911, intron 3 of 31) 80847 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 173.25-28 chr16 59555909 59556581 + 0.5 NA Intergenic Intergenic 198946 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 182.75-2 chr1 100304466 100305159 + 0.5 NA Intergenic MER5A|DNA|hAT-Charlie 23571 NR_030279 693138 NR_030279 ENSG00000207750 MIR553 MIRN553|hsa-mir-553 microRNA 553 ncRNA 172-75 chr6 49972170 49972727 + 0.5 NA Intergenic Intergenic -2823 NM_001037729 245927 Hs.582789 NM_001037729 ENSG00000214642 DEFB113 DEFB-13 defensin beta 113 protein-coding 153.5-9 chr1 229029456 229029942 + 0.5 NA Intergenic Intergenic 145102 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 251-3 chr14 34666129 34666982 + 0.5 NA Intergenic Intergenic -36407 NR_159358 58533 Hs.276523 NM_021249 ENSG00000129515 SNX6 MSTP010|TFAF2 sorting nexin 6 protein-coding 146-18 chr14 48448134 48448582 + 0.5 NA Intergenic Intergenic -653344 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 154.5-2 chr1 43251620 43252012 + 0.5 NA intron (NM_001195831, intron 23 of 23) HAL1|LINE|L1 -18167 NM_001320244 128218 Hs.104476 NM_144626 ENSG00000179178 TMEM125 - transmembrane protein 125 protein-coding 210.25-22 chr2 169881760 169882374 + 0.5 NA intron (NM_172070, intron 5 of 38) (TA)n|Simple_repeat|Simple_repeat 54559 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 175.5-23 chr14 21541241 21541837 + 0.5 NA Intergenic AluY|SINE|Alu -4323 NR_111966 6297 Hs.416358 NM_005407 ENSG00000165821 SALL2 COLB|HSAL2|Sal-2|ZNF795|p150(Sal2) spalt like transcription factor 2 protein-coding 236-6 chr11 100379510 100380199 + 0.5 NA Intergenic L1MA8|LINE|L1 -307434 NM_152432 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 160-10 chr10 90382665 90383064 + 0.5 NA Intergenic HAL1|LINE|L1 157941 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 178.25-19 chr15 25372663 25373100 + 0.5 NA intron (NM_001354542, intron 4 of 11) intron (NM_001354542, intron 4 of 11) 65348 NM_001354526 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 161.5-47 chr2 74574232 74574651 + 0.5 NA TTS (NM_001281295) TTS (NM_001281295) 20281 NM_001318866 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 205.75-48 chr5 98630573 98631225 + 0.5 NA Intergenic Intergenic -137733 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 155.5-57 chr20 17354377 17354953 + 0.5 NA intron (NM_002594, intron 2 of 11) L1ME4c|LINE|L1 127625 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 158-39 chr2 133152935 133153404 + 0.5 NA intron (NM_207481, intron 5 of 17) L1MC2|LINE|L1 -113026 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 164.5-49 chr21 45038232 45038758 + 0.5 NA Intergenic AluY|SINE|Alu -33768 NR_024089 378825 Hs.534828 NR_024089 ENSG00000275874 PICSAR C21orf113|LINC00162|NCRNA00162|NLC1-C|NLC1C|PRED74 P38 inhibited cutaneous squamous cell carcinoma associated lincRNA ncRNA 151.75-31 chr14 80739576 80740179 + 0.5 NA intron (NM_152446, intron 19 of 24) intron (NM_152446, intron 19 of 24) 201861 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 173.25-63 chr5 103189359 103189891 + 0.5 NA intron (NM_001281471, intron 30 of 32) intron (NM_001281471, intron 30 of 32) -69138 NM_033211 90355 Hs.482976 NM_033211 ENSG00000181751 C5orf30 - chromosome 5 open reading frame 30 protein-coding 151-63 chr3 85465459 85465808 + 0.5 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -39426 NM_001256503 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 187.25-15 chr12 34378453 34379046 + 0.5 NA Intergenic GSATII|Satellite|centr 356253 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 220.25-25 chr20 54590249 54590856 + 0.5 NA intron (NM_018431, intron 4 of 7) intron (NM_018431, intron 4 of 7) 114959 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 188.25-35 chr3 173625562 173626003 + 0.5 NA intron (NM_001365928, intron 3 of 6) intron (NM_001365928, intron 3 of 6) 41348 NM_001365927 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 154.5-43 chr2 29113283 29113820 + 0.5 NA intron (NM_001287528, intron 1 of 14) intron (NM_001287528, intron 1 of 14) -1327 NR_109844 79745 Hs.122927 NM_024692 ENSG00000115295 CLIP4 RSNL2 CAP-Gly domain containing linker protein family member 4 protein-coding 155.75-102 chr8 85841945 85842301 + 0.5 NA Intergenic Intergenic -14181 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 160-4 chr1 106902821 106903141 + 0.5 NA Intergenic Intergenic 84742 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 158.75-85 chr8 126520627 126521235 + 0.5 NA Intergenic Intergenic 37547 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 146.75-9 chr1 241061123 241061630 + 0.5 NA intron (NM_001350116, intron 3 of 16) MamTip1|DNA|hAT-Tip100 -70896 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 197.75-25 chr16 78267525 78267956 + 0.5 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 168086 NM_016373 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 152.25-22 chr13 70303254 70303861 + 0.5 NA Intergenic Intergenic -195064 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 184-24 chr2 34768405 34769079 + 0.5 NA Intergenic Intergenic 91185 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 161.5-34 chr14 72314771 72315165 + 0.5 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -201852 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 149-16 chr12 98984814 98985340 + 0.5 NA intron (NM_152788, intron 17 of 25) intron (NM_152788, intron 17 of 25) -89786 NM_001352207 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 156.25-73 chr5 86477099 86477572 + 0.5 NA Intergenic MER51B|LTR|ERV1 -140606 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 189.75-43 chr21 27123642 27124360 + 0.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR -156913 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 151-89 chr7 49180768 49181325 + 0.5 NA Intergenic Intergenic 256499 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 172.5-44 chr3 31850692 31851285 + 0.5 NA intron (NM_017784, intron 3 of 11) intron (NM_017784, intron 3 of 11) -130762 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 259.75-12 chr3 142460701 142461382 + 0.5 NA intron (NM_001354579, intron 41 of 45) L1MC4a|LINE|L1 -12979 NM_001282859 54464 Hs.435103 NM_019001 ENSG00000114127 XRN1 SEP1 5'-3' exoribonuclease 1 protein-coding 260.25-14 chr22 20917483 20918212 + 0.5 NA non-coding (NR_156180, exon 1 of 4) non-coding (NR_156180, exon 1 of 4) 440 NM_005207 1399 Hs.5613 NM_005207 ENSG00000099942 CRKL - CRK like proto-oncogene, adaptor protein protein-coding 146.75-14 chr10 60101278 60101692 + 0.5 NA intron (NM_001204403, intron 29 of 43) intron (NM_001204403, intron 29 of 43) 39531 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 165-64 chr5 3050730 3051232 + 0.5 NA Intergenic Intergenic -126854 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 149-47 chr2 161941636 161942073 + 0.5 NA intron (NM_001354443, intron 15 of 25) MER72|LTR|ERV1 132361 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 154-23 chr12 82486301 82486865 + 0.5 NA Intergenic L1M5|LINE|L1 -127778 NR_033192 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 182.5-71 chr6 169080406 169080923 + 0.5 NA Intergenic L1M5|LINE|L1 12878 NR_134619 102724357 Hs.129310 NR_134619 ENSG00000234519 LOC102724357 - uncharacterized LOC102724357 ncRNA 220.5-29 chr5 79105777 79106626 + 0.5 NA Intergenic MamRTE1|LINE|RTE-BovB -5608 NM_001713 635 Hs.80756 NM_001713 ENSG00000145692 BHMT BHMT1|HEL-S-61p betaine--homocysteine S-methyltransferase protein-coding 161.75-40 chr22 35267644 35268133 + 0.5 NA intron (NM_001003681, intron 5 of 10) L1ME2z|LINE|L1 10395 NM_001003681 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 207.5-15 chr14 46579184 46579909 + 0.5 NA Intergenic Intergenic 72235 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 186.75-39 chr2 16353824 16354303 + 0.5 NA Intergenic L1ME3F|LINE|L1 303636 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 203.75 chr10 7023360 7023845 + 0.5 NA Intergenic L1MA9|LINE|L1 163182 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 181.25-11 chr12 12760990 12761586 + 0.5 NA intron (NM_001130415, intron 1 of 1) intron (NM_001130415, intron 1 of 1) -3361 NR_030344 693198 NR_030344 ENSG00000207983 MIR613 MIRN613|hsa-mir-613 microRNA 613 ncRNA 160-87 chr8 117769632 117770249 + 0.5 NA Intergenic L1MEg|LINE|L1 150973 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 158.25-56 chr2 228557118 228557543 + 0.5 NA intron (NR_151716, intron 1 of 3) intron (NR_151716, intron 1 of 3) 54065 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 187.75-73 chr8 125557813 125558418 + 0.5 NA Intergenic MIR|SINE|MIR 125906 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 159.5-33 chr18 53477210 53477681 + 0.5 NA intron (NM_005215, intron 25 of 28) intron (NM_005215, intron 25 of 28) -91002 NR_110798 102724651 Hs.123442 NR_110798 ENSG00000263438 LINC01919 - long intergenic non-protein coding RNA 1919 ncRNA 211.25-12 chr14 60852035 60852647 + 0.5 NA intron (NM_002431, intron 6 of 7) L1PA8|LINE|L1 117580 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 192.75-60 chr7 41712005 41712773 + 0.5 NA non-coding (NR_027119, exon 3 of 3) non-coding (NR_027119, exon 3 of 3) -9299 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 172-22 chr14 26571211 26571860 + 0.5 NA intron (NM_001366391, intron 2 of 5) LTR78B|LTR|ERV1 -18105 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 151.5-78 chr4 124222899 124223400 + 0.5 NA Intergenic Intergenic 335285 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 157.5-79 chr5 93323416 93323860 + 0.5 NA Intergenic Penelope1_Vert|LINE|Penelope 247705 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 168.5-72 chr3 189903595 189904198 + 0.5 NA Intergenic Intergenic 73974 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 149-21 chr14 32375088 32375667 + 0.5 NA intron (NM_004274, intron 1 of 13) L2c|LINE|L2 46079 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 159.25-31 chr18 74052373 74052971 + 0.5 NA Intergenic Intergenic 95162 NM_152676 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 160.25-63 chr6 113737877 113738496 + 0.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -88111 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LINC02541 - long intergenic non-protein coding RNA 2541 ncRNA 170-63 chr8 71860243 71860783 + 0.5 NA intron (NR_033651, intron 1 of 2) intron (NR_033651, intron 1 of 2) -16017 NM_005098 9242 Hs.442619 NM_005098 ENSG00000178860 MSC ABF-1|ABF1|MYOR|bHLHa22 musculin protein-coding 156-78 chr5 127984007 127984584 + 0.5 NA intron (NR_152803, intron 1 of 1) L1MC|LINE|L1 98880 NR_152799 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 156.5-36 chr14 71445918 71446414 + 0.5 NA intron (NM_001284247, intron 1 of 23) intron (NM_001284247, intron 1 of 23) 7227 NM_001284247 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 234.25-10 chr2 189690600 189691357 + 0.5 NA intron (NM_144708, intron 3 of 22) intron (NM_144708, intron 3 of 22) 14993 NM_144708 150709 Hs.60772 NM_144708 ENSG00000151687 ANKAR - ankyrin and armadillo repeat containing protein-coding 204.25-54 chr8 112451798 112452473 + 0.5 NA intron (NM_052900, intron 31 of 68) intron (NM_052900, intron 31 of 68) -191358 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 196.5-42 chr5 26916559 26917083 + 0.5 NA intron (NM_016279, intron 2 of 11) intron (NM_016279, intron 2 of 11) 121765 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 167-46 chr2 166713063 166713591 + 0.5 NA Intergenic L1MB1|LINE|L1 -175160 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 155-112 chr8 136960289 136960736 + 0.5 NA Intergenic LTR48|LTR|ERV1 429714 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 196.75-19 chr16 67372339 67373021 + 0.5 NA intron (NM_018296, intron 9 of 13) intron (NM_018296, intron 9 of 13) 20818 NM_015964 51673 Hs.534458 NM_015964 ENSG00000159713 TPPP3 CGI-38|TPPP/p20|p20|p25gamma tubulin polymerization promoting protein family member 3 protein-coding 183.75-49 chr2 146434692 146435239 + 0.5 NA Intergenic Intergenic -152092 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 223.5-30 chr3 196283173 196284007 + 0.5 NA intron (NM_005017, intron 1 of 9) intron (NM_005017, intron 1 of 9) 4136 NM_001312673 5130 Hs.135997 NM_005017 ENSG00000161217 PCYT1A CCTA|CT|CTA|CTPCT|PCYT1|SMDCRD phosphate cytidylyltransferase 1, choline, alpha protein-coding 215.75-46 chrX 88984309 88985082 + 0.5 NA Intergenic MER4-int|LTR|ERV1 237470 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 193-43 chr5 8797373 8797994 + 0.5 NA Intergenic L1M3de|LINE|L1 -42049 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 176.5-77 chr7 7276153 7276815 + 0.5 NA intron (NR_108073, intron 3 of 3) intron (NR_108073, intron 3 of 3) 21330 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 151-74 chr5 96397135 96397616 + 0.5 NA exon (NM_000439, exon 12 of 14) exon (NM_000439, exon 12 of 14) 34784 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 192-47 chr5 12336575 12337241 + 0.5 NA Intergenic Intergenic -237949 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 202.25-35 chr2 171171999 171172531 + 0.5 NA intron (NM_001136554, intron 1 of 20) L1ME3A|LINE|L1 -11372 NM_012290 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 261.75-3 chr1 199791151 199792072 + 0.5 NA Intergenic Intergenic -236099 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 182-8 chr10 45505514 45506130 + 0.5 NA intron (NM_001282866, intron 2 of 7) LTR37-int|LTR|ERV1 29549 NM_001282866 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 195.75-37 chr2 153126870 153127515 + 0.5 NA Intergenic Intergenic 351570 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 152-18 chr13 108389200 108389738 + 0.5 NA Intergenic AluJr|SINE|Alu 119840 NM_001145645 10673 Hs.525157 NM_006573 ENSG00000102524 TNFSF13B BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4 TNF superfamily member 13b protein-coding 199.75-52 chr7 26843214 26843773 + 0.5 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 14230 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 177.25-7 chr10 53042270 53042671 + 0.5 NA Intergenic Intergenic -270770 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 217.25-15 chr11 108299909 108300650 + 0.5 NA intron (NM_001351834, intron 35 of 63) intron (NM_001351834, intron 35 of 63) 76750 NM_001351836 472 Hs.367437 NM_000051 ENSG00000149311 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 219-3 chr1 104231282 104231821 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 158528 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 217.5-17 chr15 63366637 63367122 + 0.5 NA intron (NR_135511, intron 2 of 9) intron (NR_135511, intron 2 of 9) 14967 NR_135511 771 Hs.210995 NM_001218 ENSG00000074410 CA12 CA-XII|CAXII|HsT18816|T18816 carbonic anhydrase 12 protein-coding 164.75-71 chr5 179087219 179087643 + 0.5 NA Intergenic AluSz6|SINE|Alu 27058 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 172.5-54 chr3 192818280 192818814 + 0.5 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) -91006 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 157-94 chr8 85139743 85140191 + 0.5 NA intron (NM_033402, intron 17 of 18) intron (NM_033402, intron 17 of 18) 32729 NM_001349638 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 154.75-16 chr11 59859036 59859553 + 0.5 NA intron (NM_001062, intron 4 of 8) intron (NM_001062, intron 4 of 8) 7193 NM_001062 6947 Hs.2012 NM_001062 ENSG00000134827 TCN1 HC|TC-1|TC1|TCI transcobalamin 1 protein-coding 192.25-2 chr1 68241488 68241972 + 0.5 NA Intergenic Intergenic -9184 NM_001002292 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 210-48 chr6 108631968 108632778 + 0.5 NA intron (NM_201559, intron 2 of 3) intron (NM_201559, intron 2 of 3) 71456 NM_001455 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 200.25-10 chr11 86520404 86521182 + 0.5 NA intron (NM_001014811, intron 3 of 13) intron (NM_001014811, intron 3 of 13) 145906 NM_001156474 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 152.25-105 chrX 96094233 96094583 + 0.5 NA Intergenic Intergenic 243494 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 165-30 chr15 36733854 36734388 + 0.5 NA intron (NM_032499, intron 11 of 11) intron (NM_032499, intron 11 of 11) 84385 NR_027320 161635 Hs.659822 NR_027320 CSNK1A1P1 CSNK1A1P casein kinase 1 alpha 1 pseudogene 1 pseudo 168.5-59 chr2 225455470 225455968 + 0.5 NA intron (NM_001371273, intron 3 of 7) intron (NM_001371273, intron 3 of 7) 54833 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 199-10 chr14 82139149 82139720 + 0.5 NA Intergenic MSTC|LTR|ERVL-MaLR -396296 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 153-51 chr22 27737289 27737735 + 0.5 NA Intergenic L1ME2|LINE|L1 64244 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 161.75-65 chr4 72145220 72145748 + 0.5 NA intron (NM_053036, intron 3 of 3) intron (NM_053036, intron 3 of 3) 106352 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 210-31 chr20 13604814 13605272 + 0.5 NA intron (NM_001323604, intron 4 of 14) L1ME1|LINE|L1 33889 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 340.25-3 chr4 74497553 74498597 + 0.5 NA Intergenic L1M2|LINE|L1 52939 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 191-42 chr5 66299889 66300580 + 0.5 NA Intergenic Intergenic -90788 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 174-44 chr4 108340957 108341442 + 0.5 NA Intergenic Intergenic 169079 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 154.75-102 chr8 137552082 137552574 + 0.5 NA Intergenic Intergenic -138740 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 193.75-55 chr6 154150933 154151673 + 0.5 NA intron (NM_001008503, intron 3 of 3) LTR16A1|LTR|ERVL 61541 NM_001285528 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 167.75-25 chr13 68715328 68715916 + 0.5 NA Intergenic Intergenic 169703 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 163.5-65 chr20 32749201 32749672 + 0.5 NA Intergenic L1MA4A|LINE|L1 -5428 NM_053041 149951 Hs.408427 NM_053041 ENSG00000149600 COMMD7 C20orf92|dJ1085F17.3 COMM domain containing 7 protein-coding 159.5-93 chr8 36176362 36176906 + 0.5 NA Intergenic Intergenic -466314 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 153.75-100 chr9 96603557 96604126 + 0.5 NA intron (NR_147239, intron 1 of 14) intron (NR_147239, intron 1 of 14) 16002 NM_003671 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 172.25-66 chr7 29073734 29074254 + 0.5 NA intron (NM_001371264, intron 10 of 15) Charlie23a|DNA|hAT-Charlie -51039 NR_120523 101928168 Hs.666750 NR_120523 ENSG00000285412 LOC101928168 - uncharacterized LOC101928168 ncRNA 167.75-37 chr16 8796602 8797258 + 0.5 NA promoter-TSS (NM_000303) promoter-TSS (NM_000303) 709 NM_015421 25880 Hs.513330 NM_015421 ENSG00000184857 TMEM186 C16orf51 transmembrane protein 186 protein-coding 183.25-77 chr8 107882675 107883252 + 0.5 NA Intergenic Intergenic 198976 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 182.5-47 chr4 60382495 60383146 + 0.5 NA Intergenic Intergenic -539799 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 150.25-58 chr20 55330225 55330571 + 0.5 NA Intergenic Intergenic -92645 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 164.25-13 chr1 216877575 216878207 + 0.5 NA intron (NM_001243507, intron 2 of 7) L1ME5|LINE|L1 61782 NM_001243513 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 161-62 chr4 71461007 71461628 + 0.5 NA intron (NM_003759, intron 9 of 22) intron (NM_003759, intron 9 of 22) 122264 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 160.25-59 chr5 111506974 111507367 + 0.5 NA intron (NM_001308061, intron 1 of 4) intron (NM_001308061, intron 1 of 4) -5056 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 174.25-47 chr4 35436717 35437328 + 0.5 NA Intergenic Intergenic 806917 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 186-48 chr7 81687038 81687538 + 0.5 NA intron (NR_126025, intron 1 of 10) intron (NR_126025, intron 1 of 10) 4118 NR_126025 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 155.5-102 chr8 27783123 27783741 + 0.5 NA intron (NM_001017420, intron 4 of 10) L1MD|LINE|L1 8878 NM_001017420 157570 Hs.99480 NM_001017420 ENSG00000171320 ESCO2 2410004I17Rik|EFO2|EFO2p|RBS|hEFO2 establishment of sister chromatid cohesion N-acetyltransferase 2 protein-coding 171-28 chr18 66989295 66989871 + 0.5 NA Intergenic Intergenic -92001 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 218.75-9 chr17 57921076 57921856 + 0.5 NA intron (NM_001271875, intron 1 of 10) intron (NM_001271875, intron 1 of 10) -18077 NM_001292025 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 157-12 chr10 45478454 45478968 + 0.5 NA intron (NM_001282866, intron 3 of 7) L1MA4A|LINE|L1 -25590 NR_120674 102724323 Hs.559151 NR_120674 ENSG00000231964 LOC102724323 - uncharacterized LOC102724323 ncRNA 195-22 chr15 96795778 96796416 + 0.5 NA Intergenic Intergenic 12662 NR_158221 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 241.75-11 chr2 43596718 43597329 + 0.5 NA promoter-TSS (NM_001271643) promoter-TSS (NM_001271643) -977 NM_001345924 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 158.5-10 chr10 84407808 84408230 + 0.5 NA intron (NM_018999, intron 3 of 10) LTR52|LTR|ERVL -16920 NM_001284243 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 173.5-95 chrX 54978538 54979188 + 0.5 NA intron (NR_073450, intron 1 of 12) L1MD3|LINE|L1 15325 NR_073450 5207 Hs.444304 NM_002625 ENSG00000158571 PFKFB1 F6PK|HL2K|PFRX 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 protein-coding 171.75-14 chr10 87620655 87621294 + 0.5 NA Intergenic Intergenic -38904 NM_001015880 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 158.5-96 chr8 78238358 78238945 + 0.5 NA Intergenic L2a|LINE|L2 -277689 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 277-4 chr2 172544179 172545246 + 0.5 NA Intergenic L1PA7|LINE|L1 -10661 NR_103731 5163 Hs.470633 NM_002610 ENSG00000152256 PDK1 - pyruvate dehydrogenase kinase 1 protein-coding 163.5-15 chr10 71593130 71593731 + 0.5 NA intron (NM_052836, intron 9 of 12) L1ME3Cz|LINE|L1 -81510 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 165.25-68 chr8 98595112 98595454 + 0.5 NA intron (NM_006281, intron 7 of 10) intron (NM_006281, intron 7 of 10) 168325 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 171.75-21 chr12 110994705 110995207 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -37138 NR_135001 105369980 Hs.564357 NR_135001 ENSG00000258240 LOC105369980 - uncharacterized LOC105369980 ncRNA 157.75-45 chr18 53729595 53730091 + 0.5 NA Intergenic Intergenic -148784 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 146.5-12 chr10 76804744 76805312 + 0.5 NA Intergenic L1MC4|LINE|L1 -83016 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 167-26 chr14 83212563 83213157 + 0.5 NA Intergenic L1M1|LINE|L1 570228 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 234-10 chr4 161282656 161283329 + 0.5 NA Intergenic L1M4|LINE|L1 -739741 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 188.25-2 chr1 114753964 114754533 + 0.5 NA intron (NM_001007553, intron 1 of 19) AluSz|SINE|Alu 3736 NM_001007553 7812 Hs.69855 NM_007158 ENSG00000009307 CSDE1 D1S155E|UNR cold shock domain containing E1 protein-coding 239.5-29 chr5 54084836 54085654 + 0.5 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) -133646 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 151.5-95 chr8 16569007 16569416 + 0.5 NA Intergenic Intergenic -376420 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 160.75-94 chr6 64322852 64323261 + 0.5 NA intron (NM_001292009, intron 29 of 43) L1MB8|LINE|L1 516220 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 178.5-65 chr9 30471850 30472377 + 0.5 NA Intergenic AluY|SINE|Alu -63659 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 164.25-37 chr17 59354282 59354765 + 0.5 NA intron (NM_001005404, intron 2 of 4) intron (NM_001005404, intron 2 of 4) -11560 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 210-5 chr11 23399584 23400187 + 0.5 NA Intergenic Intergenic 19305 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 175.75-50 chr4 88186072 88186510 + 0.5 NA intron (NM_001257386, intron 1 of 15) L1MA4|LINE|L1 -26968 NM_001348989 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 165-33 chr17 39235235 39235840 + 0.5 NA Intergenic AluSx|SINE|Alu -9592 NM_198993 342667 Hs.145068 NM_198993 ENSG00000141750 STAC2 24b2|24b2/STAC2 SH3 and cysteine rich domain 2 protein-coding 226.75-17 chr2 161656593 161657263 + 0.5 NA intron (NM_001354451, intron 1 of 25) intron (NM_001354451, intron 1 of 25) 32512 NM_001354449 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 173.5-54 chr3 115694389 115694897 + 0.5 NA intron (NM_002045, intron 2 of 2) MIRb|SINE|MIR 71133 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 152.75-78 chr5 77250806 77251253 + 0.5 NA intron (NM_001029853, intron 1 of 20) MIR|SINE|MIR 40349 NM_001029854 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 262.25 chr1 81854222 81855104 + 0.5 NA intron (NM_001366002, intron 3 of 20) intron (NM_001366002, intron 3 of 20) 52210 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 154.75-33 chr17 61419328 61419926 + 0.5 NA Intergenic Intergenic 7876 NR_160788 388407 Hs.434459 NM_203425 C17orf82 - chromosome 17 open reading frame 82 ncRNA 199.5-20 chr2 26029907 26030455 + 0.5 NA Intergenic AluJb|SINE|Alu -3903 NM_016131 10890 Hs.467960 NM_016131 ENSG00000084733 RAB10 - RAB10, member RAS oncogene family protein-coding 160-29 chr17 63226371 63226968 + 0.5 NA intron (NM_025185, intron 6 of 25) L1PA10|LINE|L1 213598 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 150.25-90 chr6 52707668 52708235 + 0.5 NA Intergenic PABL_A-int|LTR|ERV1 36838 NM_014051 28978 Hs.94896 NM_014051 ENSG00000096092 TMEM14A C6orf73|PTD011 transmembrane protein 14A protein-coding 181.25-35 chr20 54065169 54065853 + 0.5 NA intron (NM_001366297, intron 1 of 8) MER20|DNA|hAT-Charlie 2974 NR_039913 100616225 NR_039913 ENSG00000265595 MIR4756 - microRNA 4756 ncRNA 181.5-23 chr14 55687759 55688415 + 0.5 NA Intergenic Charlie1a|DNA|hAT-Charlie -78158 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 206.75-19 chr18 55387169 55387755 + 0.5 NA intron (NM_001348217, intron 5 of 18) intron (NM_001348217, intron 5 of 18) 14226 NM_001330605 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 158.25-19 chr11 32128991 32129391 + 0.5 NA Intergenic L1PA16|LINE|L1 14721 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 197.5-39 chr21 22734711 22735399 + 0.5 NA Intergenic Intergenic -344229 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 281.5-2 chr1 70890335 70891300 + 0.5 NA intron (NR_028293, intron 2 of 4) L2c|LINE|L2 -155689 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 146.75-126 chr9 83246286 83246622 + 0.5 NA 3' UTR (NM_174938, exon 14 of 14) 3' UTR (NM_174938, exon 14 of 14) 20814 NM_001244962 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 178.25-69 chr8 68535244 68535756 + 0.5 NA 3' UTR (NM_001195639, exon 7 of 7) 3' UTR (NM_001195639, exon 7 of 7) -204009 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 243-20 chr6 55494391 55494907 + 0.5 NA intron (NR_109869, intron 3 of 4) intron (NR_109869, intron 3 of 4) 84565 NM_001287753 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 179.25-35 chr17 69591762 69592263 + 0.5 NA Intergenic L1MC4|LINE|L1 -1975 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 147-28 chr14 55035178 55035610 + 0.5 NA intron (NM_199421, intron 2 of 2) Tigger10|DNA|TcMar-Tigger 8158 NM_080867 122809 Hs.744302 NM_080867 ENSG00000180008 SOCS4 SOCS7 suppressor of cytokine signaling 4 protein-coding 156.5-5 chr1 96809905 96810438 + 0.5 NA intron (NM_001300985, intron 11 of 13) intron (NM_001300985, intron 11 of 13) 87533 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 192.75-28 chr2 69795139 69795792 + 0.5 NA intron (NM_001320700, intron 3 of 12) HUERS-P3-int|LTR|ERV1 -34195 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 175.25-37 chr2 181246127 181246673 + 0.5 NA intron (NR_130784, intron 2 of 4) intron (NR_130784, intron 2 of 4) 59252 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 161.25-24 chr14 54943853 54944374 + 0.5 NA intron (NM_007086, intron 25 of 25) (TTA)n|Simple_repeat|Simple_repeat -41287 NM_001024071 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 201.75-10 chr12 117174326 117174964 + 0.5 NA intron (NM_015002, intron 5 of 11) intron (NM_015002, intron 5 of 11) 15825 NM_033624 23014 Hs.740376 NM_015002 ENSG00000135108 FBXO21 FBX21 F-box protein 21 protein-coding 155-54 chr3 57300636 57301147 + 0.5 NA intron (NM_001366028, intron 70 of 73) intron (NM_001366028, intron 70 of 73) -8206 NM_001142733 142686 Hs.665154 NM_130387 ENSG00000239388 ASB14 - ankyrin repeat and SOCS box containing 14 protein-coding 176.25-18 chr12 75233780 75234363 + 0.5 NA promoter-TSS (NR_149000) promoter-TSS (NR_149000) -669 NR_149000 100130268 Hs.524596 NR_149000 ENSG00000254451 LOC100130268 - uncharacterized LOC100130268 ncRNA 165.75-108 chr8 104189166 104189670 + 0.5 NA intron (NM_001348498, intron 20 of 24) intron (NM_001348498, intron 20 of 24) -33917 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 188.75-56 chr7 11828512 11828962 + 0.5 NA intron (NM_015204, intron 1 of 26) (AT)n|Simple_repeat|Simple_repeat 3461 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 160.25-33 chr2 95565790 95566354 + 0.5 NA Intergenic Intergenic -25929 NM_138800 129868 Hs.232026 NM_138800 ENSG00000144015 TRIM43 TRIM43A tripartite motif containing 43 protein-coding 164.75-7 chr10 23827730 23828163 + 0.5 NA intron (NM_001098500, intron 1 of 18) L2b|LINE|L2 133219 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 163.5-52 chr2 10899613 10900083 + 0.5 NA Intergenic L1MC5|LINE|L1 -12086 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 151.75-101 chr7 102894629 102895049 + 0.5 NA intron (NR_105043, intron 12 of 20) intron (NR_105043, intron 12 of 20) -18161 NM_005824 10234 Hs.567412 NM_005824 ENSG00000128606 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 156.25-102 chr9 31351071 31351613 + 0.5 NA Intergenic Intergenic 30148 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 187-57 chr7 65410387 65411060 + 0.5 NA Intergenic AluSz6|SINE|Alu 36868 NM_001287534 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 171-19 chr14 57627121 57627775 + 0.5 NA intron (NM_001352014, intron 1 of 9) intron (NM_001352014, intron 1 of 9) -133591 NM_001283057 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 167.5-19 chr12 89354576 89355035 + 0.5 NA Intergenic Intergenic -2304 NM_001946 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 197.25-42 chr5 88806957 88807600 + 0.5 NA intron (NM_001131005, intron 3 of 10) AluJo|SINE|Alu 16649 NM_001193348 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 203-16 chr18 1515821 1516422 + 0.5 NA Intergenic Intergenic -156492 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 184.75-40 chr2 19430577 19431033 + 0.5 NA Intergenic Intergenic -72182 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 152.5-9 chr10 42406386 42406864 + 0.5 NA Intergenic Intergenic -38580 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 149.25-33 chr15 87871663 87872138 + 0.5 NA 3' UTR (NM_002530, exon 19 of 19) 3' UTR (NM_002530, exon 19 of 19) 74368 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 195-33 chr3 135554804 135555484 + 0.5 NA Intergenic Intergenic -410584 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 152.5-43 chr18 1762701 1763193 + 0.5 NA Intergenic Intergenic -403318 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 149-53 chr20 60466204 60466698 + 0.5 NA Intergenic Intergenic 6525 NR_109903 101928048 Hs.572803 NR_109903 LOC101928048 - uncharacterized LOC101928048 ncRNA 156.25-96 chr8 118981360 118981875 + 0.5 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) 29354 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 173.25-15 chr12 3707985 3708497 + 0.5 NA intron (NM_001144958, intron 3 of 19) LTR16A2|LTR|ERVL 44868 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 181.75-54 chr5 113128630 113129311 + 0.5 NA intron (NM_001085377, intron 5 of 18) intron (NM_001085377, intron 5 of 18) 152172 NM_001242377 167227 Hs.443875 NM_152624 ENSG00000172795 DCP2 NUDT20 decapping mRNA 2 protein-coding 173.5-97 chrX 102514447 102515015 + 0.5 NA intron (NM_021992, intron 2 of 2) intron (NM_021992, intron 2 of 2) 2008 NM_021992 11013 Hs.56145 NM_021992 ENSG00000158164 TMSB15A TMSB15|TMSB15B|TMSL8|TMSNB|Tb15|TbNB thymosin beta 15a protein-coding 181-15 chr13 91699234 91699840 + 0.5 NA intron (NM_004466, intron 3 of 7) intron (NM_004466, intron 3 of 7) 300916 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 165.75-33 chr14 87019549 87020110 + 0.5 NA Intergenic Intergenic 114051 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 170.25-78 chr8 125692775 125693272 + 0.5 NA Intergenic Intergenic 258174 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 159.5-32 chr18 6396879 6397319 + 0.5 NA intron (NM_001365765, intron 1 of 18) Helitron1Nb_Mam|RC|Helitron 17812 NM_001365769 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 153-69 chr4 96889092 96889671 + 0.5 NA Intergenic Intergenic -477545 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 154.5-69 chr4 57352501 57352893 + 0.5 NA Intergenic Intergenic -73175 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 148.5-92 chr7 95746158 95746717 + 0.5 NA Intergenic L1ME3|LINE|L1 -26069 NM_001278421 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 185.75-67 chr5 153917679 153918156 + 0.5 NA Intergenic L1PA11|LINE|L1 -18930 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 177-72 chr9 26416237 26416939 + 0.5 NA Intergenic L2c|LINE|L2 349913 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 162.75-41 chr2 142425143 142425641 + 0.5 NA Intergenic Intergenic -293691 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 164.5-88 chr7 94520849 94521336 + 0.5 NA intron (NM_001363428, intron 3 of 17) AluSc8|SINE|Alu 11283 NM_001363426 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 170.25-49 chr3 132640982 132641526 + 0.5 NA intron (NM_032169, intron 4 of 19) intron (NM_032169, intron 4 of 19) -13192 NM_198329 79876 Hs.170737 NM_024818 ENSG00000081307 UBA5 EIEE44|SCAR24|THIFP1|UBE1DC1 ubiquitin like modifier activating enzyme 5 protein-coding 176.75-36 chr2 49953887 49954395 + 0.5 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) 20062 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 190.75-7 chr1 211506356 211506942 + 0.5 NA Intergenic MER66B|LTR|ERV1 -13732 NM_001164688 343035 Hs.632495 NM_183059 ENSG00000198570 RD3 C1orf36|LCA12 retinal degeneration 3, GUCY2D regulator protein-coding 168.5-66 chr3 79634765 79635336 + 0.5 NA intron (NM_002941, intron 1 of 30) intron (NM_002941, intron 1 of 30) 127163 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 177.25-29 chr18 12109648 12110136 + 0.5 NA intron (NM_001277333, intron 8 of 13) intron (NM_001277333, intron 8 of 13) 16049 NM_001277333 342850 Hs.448906 NM_001277333 ENSG00000181626 ANKRD62 DKFZp779B1634 ankyrin repeat domain 62 protein-coding 231.5-27 chr5 120484331 120484806 + 0.5 NA intron (NM_016644, intron 2 of 2) (AT)n|Simple_repeat|Simple_repeat 18937 NM_001308087 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 248.75-6 chr15 88275986 88276651 + 0.5 NA Intergenic MER5A|DNA|hAT-Charlie -19579 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 162.75-7 chr10 24624538 24625006 + 0.5 NA intron (NM_001367452, intron 4 of 22) intron (NM_001367452, intron 4 of 22) -1929 NM_001367455 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 184.75-6 chr1 158032174 158032882 + 0.5 NA TTS (NR_145471) TTS (NR_145471) 6978 NR_145471 100505785 Hs.664656 NR_145471 KIRREL1-IT1 KIRREL-IT1 KIRREL1 intronic transcript 1 ncRNA 183.75-42 chr2 22787172 22787785 + 0.5 NA Intergenic MER3|DNA|hAT-Charlie 250999 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 155.75-39 chr15 94838285 94838780 + 0.5 NA Intergenic Intergenic -16831 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 179.5-66 chr6 68737005 68737528 + 0.5 NA intron (NM_001704, intron 3 of 31) L1M5|LINE|L1 101984 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 186.75-15 chr11 37448894 37449485 + 0.5 NA Intergenic Intergenic -489412 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 178.5-15 chr12 20501244 20501813 + 0.5 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) -70336 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 191.75-44 chr4 44948526 44949111 + 0.5 NA Intergenic Intergenic -222184 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 225.5-13 chr14 58634965 58635500 + 0.5 NA intron (NR_046093, intron 1 of 3) intron (NR_046093, intron 1 of 3) 1164 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 153.25-48 chr18 4325291 4325670 + 0.5 NA intron (NM_001242761, intron 1 of 11) L1PA15|LINE|L1 60878 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 289.75-9 chr17 58786618 58787565 + 0.5 NA intron (NM_014906, intron 1 of 6) MIRb|SINE|MIR 31222 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 192.25-64 chr9 26788157 26788867 + 0.5 NA Intergenic L2c|LINE|L2 104290 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 157.75-83 chr4 154727081 154727656 + 0.5 NA Intergenic MER90a|LTR|ERV1 -13473 NM_001301645 9227 Hs.658427 NM_004744 ENSG00000121207 LRAT LCA14 lecithin retinol acyltransferase protein-coding 214.75-20 chr14 23158174 23158658 + 0.5 NA intron (NM_012244, intron 3 of 10) AluSg4|SINE|Alu -2958 NR_049767 23428 Hs.596643 NM_012244 ENSG00000092068 SLC7A8 LAT2|LPI-PC1 solute carrier family 7 member 8 protein-coding 172.5-11 chr11 41841077 41841581 + 0.5 NA Intergenic L1MEd|LINE|L1 126761 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 254.25-7 chr18 71794955 71795601 + 0.5 NA Intergenic Intergenic -13052 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 165.5-5 chr1 98853615 98854158 + 0.5 NA Intergenic Intergenic -150390 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 193.75-21 chr14 37909838 37910455 + 0.5 NA Intergenic Intergenic -8022 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 153.75-57 chr4 66722693 66723101 + 0.5 NA Intergenic Intergenic 446073 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 176.75-21 chr14 40563702 40564173 + 0.5 NA Intergenic L1MA2|LINE|L1 -390774 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 167.25-59 chr5 11497435 11497805 + 0.5 NA intron (NM_001288715, intron 2 of 20) L2c|LINE|L2 91297 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 188.75-38 chr3 9241339 9241766 + 0.5 NA intron (NM_014850, intron 1 of 21) intron (NM_014850, intron 1 of 21) 8094 NM_014850 9901 Hs.654743 NM_014850 ENSG00000196220 SRGAP3 ARHGAP14|MEGAP|SRGAP2|WRP SLIT-ROBO Rho GTPase activating protein 3 protein-coding 162-83 chr9 38714670 38715307 + 0.5 NA Intergenic L1MD3|LINE|L1 93900 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 163.25-41 chr2 80480485 80480996 + 0.5 NA intron (NM_001282599, intron 3 of 11) MIRc|SINE|MIR 167361 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 147.25-40 chr17 82402805 82403299 + 0.5 NA intron (NR_033265, intron 7 of 9) AluJb|SINE|Alu -15295 NM_173620 284004 Hs.744207 NM_173620 ENSG00000169660 HEXD HEXDC hexosaminidase D protein-coding 169.25-35 chr3 13198187 13198844 + 0.5 NA Intergenic Intergenic -125086 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 185.25-56 chr3 181006749 181007380 + 0.5 NA Intergenic Intergenic -17290 NR_033721 131118 Hs.230601 NM_145261 ENSG00000205981 DNAJC19 PAM18|TIM14|TIMM14 DnaJ heat shock protein family (Hsp40) member C19 protein-coding 168.5-36 chr16 46517797 46518350 + 0.5 NA non-coding (NR_026556, exon 9 of 17) non-coding (NR_026556, exon 9 of 17) 51024 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 158.5-28 chr15 59659513 59660008 + 0.5 NA 3' UTR (NM_001368061, exon 8 of 8) 3' UTR (NM_001368061, exon 8 of 8) -2245 NM_001320930 2958 Hs.512934 NM_004492 ENSG00000140307 GTF2A2 HsT18745|T18745|TF2A2|TFIIA|TFIIA-12|TFIIA-gamma|TFIIAS general transcription factor IIA subunit 2 protein-coding 240 chr1 118616614 118617204 + 0.5 NA Intergenic L1MA2|LINE|L1 371434 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 166.25-24 chr14 54670215 54670872 + 0.5 NA intron (NM_015589, intron 1 of 11) MIRb|SINE|MIR -84290 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 156.75-45 chr2 8679036 8679493 + 0.5 NA TTS (NR_110153) TTS (NR_110153) 2597 NR_110153 100506299 Hs.439031 NR_110153 ENSG00000235092 ID2-AS1 - ID2 antisense RNA 1 ncRNA 185.5-42 chr20 54930305 54930887 + 0.5 NA Intergenic LTR85b|LTR|Gypsy? 455003 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 163.25-58 chr5 45063472 45064015 + 0.5 NA Intergenic L1MC4a|LINE|L1 254796 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 186.25-66 chr9 103792202 103792817 + 0.5 NA Intergenic AluSz6|SINE|Alu -207200 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 172-4 chr1 69942076 69942693 + 0.5 NA intron (NM_001370785, intron 8 of 26) intron (NM_001370785, intron 8 of 26) 23062 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 177-7 chr10 84796380 84796944 + 0.5 NA Intergenic L1MB7|LINE|L1 371493 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 177.25-75 chr8 88806182 88806734 + 0.5 NA Intergenic Intergenic -478975 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 188.5-57 chr6 9588296 9588758 + 0.5 NA Intergenic L1PA4|LINE|L1 -815975 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 155.75-38 chr15 69999390 69999991 + 0.5 NA Intergenic MLT1A|LTR|ERVL-MaLR 79778 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 146.5-90 chr5 134325807 134326372 + 0.5 NA intron (NM_001349366, intron 1 of 8) intron (NM_001349366, intron 1 of 8) 40985 NM_016508 51265 Hs.719926 NM_016508 ENSG00000006837 CDKL3 NKIAMRE cyclin dependent kinase like 3 protein-coding 161-44 chr2 28493384 28493913 + 0.5 NA Intergenic Intergenic -2412 NM_153021 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 154.25-51 chr20 20286660 20287108 + 0.5 NA intron (NM_015585, intron 22 of 26) Tigger16a|DNA|TcMar-Tigger -81220 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 146.25-72 chr4 67788809 67789360 + 0.5 NA Intergenic Intergenic -32998 NM_000406 2798 Hs.407587 NM_000406 ENSG00000109163 GNRHR GNRHR1|GRHR|HH7|LHRHR|LRHR gonadotropin releasing hormone receptor protein-coding 158.5-46 chr2 126547000 126547514 + 0.5 NA Intergenic L1MC|LINE|L1 -108678 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 184-14 chr14 63173832 63174311 + 0.5 NA Intergenic L2|LINE|L2 -30372 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 153-47 chr20 48103164 48103618 + 0.5 NA Intergenic Intergenic -113274 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 198-9 chr14 71101614 71102326 + 0.5 NA intron (NM_014982, intron 30 of 35) intron (NM_014982, intron 30 of 35) 194511 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 182.5-36 chr3 4646649 4647204 + 0.5 NA intron (NM_001168272, intron 10 of 60) L1ME2|LINE|L1 104664 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 263.5-26 chr9 96475445 96476235 + 0.5 NA intron (NM_014282, intron 5 of 7) intron (NM_014282, intron 5 of 7) 25671 NM_014282 22927 Hs.494567 NM_014282 ENSG00000130956 HABP4 IHABP-4|IHABP4|Ki-1/57|SERBP1L hyaluronan binding protein 4 protein-coding 193.25-14 chr11 25995807 25996565 + 0.5 NA Intergenic L1MA9|LINE|L1 -192937 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 148.5-89 chr7 15773364 15773919 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 85263 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 169.5-30 chr13 97390373 97390892 + 0.5 NA intron (NM_144778, intron 8 of 8) intron (NM_144778, intron 8 of 8) -43537 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 164-82 chr8 34371088 34371688 + 0.5 NA Intergenic Intergenic -412533 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 185-70 chr8 91845249 91845750 + 0.5 NA Intergenic Intergenic 172181 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 158-35 chr2 107542658 107543197 + 0.5 NA intron (NR_146968, intron 2 of 2) L1ME3D|LINE|L1 13508 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 179.75-49 chr5 131617369 131617877 + 0.5 NA intron (NM_016340, intron 1 of 27) AluSx|SINE|Alu 17606 NM_001164387 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 155-113 chr8 138343260 138343792 + 0.5 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 153735 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 170.5-62 chr5 168034162 168034635 + 0.5 NA intron (NM_001080428, intron 3 of 24) intron (NM_001080428, intron 3 of 24) -131447 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 159.25-8 chr11 26342427 26342928 + 0.5 NA intron (NM_031418, intron 1 of 26) intron (NM_031418, intron 1 of 26) 10547 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 153.25-8 chr1 76822882 76823279 + 0.5 NA Intergenic L1PA14|LINE|L1 -43813 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 151.25-56 chr3 1854661 1855065 + 0.5 NA Intergenic Intergenic -243940 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 214.25-29 chr5 169463374 169463897 + 0.5 NA Intergenic Intergenic -120138 NM_001329639 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 147-105 chr7 112726734 112727191 + 0.5 NA Intergenic L1M4a1|LINE|L1 63431 NM_022484 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 243.25-9 chr18 72592107 72592778 + 0.5 NA Intergenic L1MA3|LINE|L1 -48100 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 253.75-13 chr19 49257917 49258587 + 0.5 NA Intergenic L1MB5|LINE|L1 50616 NR_036209 100422979 NR_036209 ENSG00000265407 MIR4324 mir-4324 microRNA 4324 ncRNA 206.5-3 chr1 113792540 113793303 + 0.5 NA intron (NM_018364, intron 2 of 6) intron (NM_018364, intron 2 of 6) 19555 NM_018364 54665 Hs.486285 NM_018364 ENSG00000081019 RSBN1 KDM9|ROSBIN round spermatid basic protein 1 protein-coding 155-76 chr4 154590125 154590660 + 0.5 NA intron (NM_021871, intron 1 of 4) intron (NM_021871, intron 1 of 4) 350 NM_021871 2243 Hs.351593 NM_000508 ENSG00000171560 FGA Fib2 fibrinogen alpha chain protein-coding 260.5-9 chr3 95520448 95521034 + 0.5 NA Intergenic L1MC3|LINE|L1 162452 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 159-83 chr7 108033055 108033639 + 0.5 NA intron (NM_001318046, intron 31 of 33) intron (NM_001318046, intron 31 of 33) -30186 NM_002291 3912 Hs.650585 NM_002291 ENSG00000091136 LAMB1 CLM|LIS5 laminin subunit beta 1 protein-coding 151.75-37 chr17 60419904 60420247 + 0.5 NA Intergenic (TTTTA)n|Simple_repeat|Simple_repeat -2414 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 147.75-31 chr14 37371001 37371546 + 0.5 NA intron (NM_138731, intron 11 of 13) AluSx1|SINE|Alu 173336 NM_138731 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 189.5-16 chr12 59314145 59314735 + 0.5 NA Intergenic Intergenic -281589 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 163.25-60 chr5 90852406 90852956 + 0.5 NA intron (NR_003149, intron 79 of 89) MER5A|DNA|hAT-Charlie 293884 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 173-44 chr22 22081681 22082176 + 0.5 NA Intergenic Intergenic -37994 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 151.5-87 chr6 141297220 141297676 + 0.5 NA Intergenic MSTD|LTR|ERVL-MaLR 613634 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 159.75-29 chr13 97205751 97206140 + 0.5 NA Intergenic Intergenic -16344 NM_001306070 10150 Hs.657347 NM_144778 ENSG00000139793 MBNL2 MBLL|MBLL39|PRO2032 muscleblind like splicing regulator 2 protein-coding 150-6 chr1 189979857 189980312 + 0.5 NA Intergenic L1MA3|LINE|L1 495926 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 172.25-47 chr4 31449098 31449544 + 0.5 NA Intergenic L1MB7|LINE|L1 -57223 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 162.75-84 chr8 81336355 81336846 + 0.5 NA Intergenic Intergenic 56064 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 175.25-68 chr8 66427683 66428371 + 0.5 NA promoter-TSS (NM_015169) promoter-TSS (NM_015169) 950 NR_040434 100505676 Hs.121613 NM_001242759 ENSG00000246145 RRS1-AS1 - RRS1 antisense RNA 1 (head to head) ncRNA 164.75-17 chr11 81933521 81933983 + 0.5 NA intron (NR_120571, intron 6 of 7) L2|LINE|L2 -42916 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 168.75-99 chr8 84684849 84685235 + 0.5 NA intron (NM_001354308, intron 3 of 9) MLT1A|LTR|ERVL-MaLR -20885 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 146-67 chr5 62483431 62483789 + 0.5 NA intron (NM_016338, intron 10 of 29) intron (NM_016338, intron 10 of 29) 64726 NM_001134779 51194 Hs.482269 NM_016338 ENSG00000086200 IPO11 RanBP11 importin 11 protein-coding 193.75-27 chr17 15382324 15382895 + 0.5 NA Intergenic MER117|DNA|hAT-Charlie -41012 NM_031898 64518 Hs.414648 NM_031898 ENSG00000125409 TEKT3 - tektin 3 protein-coding 210-38 chr3 95684163 95684794 + 0.5 NA Intergenic Intergenic -1285 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 159.25-51 chr3 96651441 96651948 + 0.5 NA Intergenic L1ME3A|LINE|L1 -162900 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 175.5-81 chr6 51718551 51719236 + 0.5 NA intron (NM_138694, intron 60 of 66) intron (NM_138694, intron 60 of 66) 97023 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 164.5-4 chr1 177137792 177138290 + 0.5 NA intron (NM_207108, intron 1 of 21) intron (NM_207108, intron 1 of 21) 26671 NM_001364856 460 Hs.495897 NM_004319 ENSG00000152092 ASTN1 ASTN astrotactin 1 protein-coding 169.75-18 chr10 122366500 122367096 + 0.5 NA Intergenic L2|LINE|L2 -7910 NM_001001974 59338 Hs.643512 NM_021622 ENSG00000107679 PLEKHA1 TAPP1 pleckstrin homology domain containing A1 protein-coding 152-51 chr3 37165752 37166325 + 0.5 NA intron (NM_001348298, intron 2 of 21) L1MB4|LINE|L1 8544 NM_006309 9209 Hs.740522 NM_006309 ENSG00000093167 LRRFIP2 HUFI-2 LRR binding FLII interacting protein 2 protein-coding 150.25-25 chr12 43408392 43408925 + 0.5 NA intron (NM_025003, intron 28 of 38) intron (NM_025003, intron 28 of 38) 143545 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 174.5-71 chr6 101812855 101813471 + 0.5 NA intron (NM_001166247, intron 8 of 16) (CATATA)n|Simple_repeat|Simple_repeat 414178 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 209.5-48 chr8 68945566 68946342 + 0.5 NA intron (NR_039986, intron 3 of 4) intron (NR_039986, intron 3 of 4) 158236 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 179.75-56 chr6 158814916 158815444 + 0.5 NA intron (NM_003379, intron 1 of 12) intron (NM_003379, intron 1 of 12) -2799 NR_102425 101409257 Hs.571207 NR_102425 ENSG00000233893 EZR-AS1 - EZR antisense RNA 1 ncRNA 175-13 chr14 65559396 65559868 + 0.5 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) 88530 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 186.25-20 chr19 31998107 31998600 + 0.5 NA Intergenic L1M4a1|LINE|L1 -27509 NR_110675 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 237.25-2 chr10 59843071 59843695 + 0.5 NA intron (NM_005436, intron 2 of 8) L1ME3B|LINE|L1 63173 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 146.5-102 chr8 101060942 101061485 + 0.5 NA intron (NR_033962, intron 2 of 2) L1ME4b|LINE|L1 9159 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 157.75-74 chr4 54361784 54362269 + 0.5 NA Intergenic Intergenic 29134 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 146.5-66 chr22 36394153 36394635 + 0.5 NA Intergenic AluJb|SINE|Alu -6327 NM_002473 4627 Hs.474751 NM_002473 ENSG00000100345 MYH9 BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA myosin heavy chain 9 protein-coding 196.25 chr1 40686784 40687490 + 0.5 NA Intergenic L1MB3|LINE|L1 -4567 NM_001142587 4802 Hs.713051 NM_014223 ENSG00000066136 NFYC CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC nuclear transcription factor Y subunit gamma protein-coding 147.5-46 chr2 150588505 150588983 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -16523 NR_110241 101929260 Hs.732324 NR_110241 ENSG00000236049 LINC01920 - long intergenic non-protein coding RNA 1920 ncRNA 155-106 chr8 113667394 113667860 + 0.5 NA Intergenic Intergenic -230688 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 161.25-6 chr10 34437785 34438367 + 0.5 NA intron (NM_001184791, intron 4 of 20) intron (NM_001184791, intron 4 of 20) 377220 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 147.75-92 chr6 40366839 40367216 + 0.5 NA Intergenic L1MEc|LINE|L1 -11021 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 147.25-23 chr11 83428179 83428672 + 0.5 NA Intergenic Intergenic -142018 NM_001286120 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 156.75-86 chr6 51677971 51678566 + 0.5 NA intron (NM_138694, intron 60 of 66) MIRb|SINE|MIR 56398 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 210.5-17 chr18 75967362 75967980 + 0.5 NA Intergenic Intergenic -155327 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 185.75-34 chr19 46916713 46917175 + 0.5 NA intron (NM_004491, intron 1 of 6) intron (NM_004491, intron 1 of 6) 55947 NM_004491 2909 Hs.509447 NM_004491 ENSG00000160007 ARHGAP35 GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP Rho GTPase activating protein 35 protein-coding 151-99 chr8 82397361 82397899 + 0.5 NA Intergenic Intergenic -514474 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 153-3 chr1 195281588 195282023 + 0.5 NA Intergenic Intergenic 806910 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 180.25-59 chr5 95890875 95891345 + 0.5 NA exon (NM_012081, exon 10 of 12) exon (NM_012081, exon 10 of 12) 38878 NR_026936 202299 Hs.8373 NM_175616 ENSG00000236882 LINC01554 C5orf27|FIS long intergenic non-protein coding RNA 1554 ncRNA 159.5-21 chr14 72219391 72219929 + 0.5 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 286133 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 152.5-4 chr1 197531003 197531390 + 0.5 NA intron (NR_125340, intron 17 of 19) intron (NR_125340, intron 17 of 19) 244284 NR_125340 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 148-84 chr7 6438614 6439128 + 0.5 NA intron (NM_001142936, intron 2 of 12) (GAT)n|Simple_repeat|Simple_repeat 9083 NM_139179 221955 Hs.487498 NM_139179 ENSG00000164535 DAGLB DAGLBETA|KCCR13L diacylglycerol lipase beta protein-coding 153.75-97 chr9 30584542 30585069 + 0.5 NA Intergenic L1PA10|LINE|L1 -176351 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 145.75-3 chr1 76422945 76423321 + 0.5 NA intron (NM_001349109, intron 3 of 3) intron (NM_001349109, intron 3 of 3) 348387 NM_001349106 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 149-25 chr14 55892034 55892582 + 0.5 NA Intergenic MIR|SINE|MIR -95634 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 155.75 chr1 55852643 55853229 + 0.5 NA Intergenic Intergenic 92027 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 161.75-84 chr7 108486115 108486681 + 0.5 NA intron (NM_001256009, intron 7 of 9) intron (NM_001256009, intron 7 of 9) -29678 NM_001371123 158-89 chr8 76410332 76410787 + 0.5 NA intron (NR_105006, intron 1 of 5) intron (NR_105006, intron 1 of 5) 3905 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 182.25-39 chr3 177855358 177855956 + 0.5 NA intron (NR_110826, intron 1 of 2) L1ME2|LINE|L1 38792 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 186.25-40 chr4 46303607 46304222 + 0.5 NA intron (NM_001114175, intron 6 of 8) Tigger4a|DNA|TcMar-Tigger 85465 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 198.25-33 chr3 118169681 118170313 + 0.5 NA Intergenic MLT-int|LTR|ERVL-MaLR -471771 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 167.75-9 chr10 60673231 60673732 + 0.5 NA intron (NM_001204403, intron 1 of 43) AluSq2|SINE|Alu 60047 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 215.5-9 chr11 89362638 89363231 + 0.5 NA intron (NM_001143837, intron 15 of 20) intron (NM_001143837, intron 15 of 20) 127826 NM_001291929 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 190.75-37 chr20 39495162 39495605 + 0.5 NA Intergenic Intergenic -270635 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 215.75-4 chr10 93093466 93094168 + 0.5 NA Intergenic (AAAT)n|Simple_repeat|Simple_repeat 19924 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 171-52 chr5 54488446 54488996 + 0.5 NA Intergenic AluSx|SINE|Alu -29038 NM_001102575 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 201-31 chr5 41056094 41056511 + 0.5 NA intron (NM_173489, intron 9 of 41) intron (NM_173489, intron 9 of 41) 15040 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 171.5-47 chr2 105505044 105505458 + 0.5 NA Intergenic L2b|LINE|L2 -66738 NM_201557 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 203.25-35 chr5 139427248 139427742 + 0.5 NA intron (NM_152686, intron 3 of 7) intron (NM_152686, intron 3 of 7) 12030 NM_152686 202052 Hs.483537 NM_152686 ENSG00000170464 DNAJC18 - DnaJ heat shock protein family (Hsp40) member C18 protein-coding 150.75-8 chr10 52647387 52647934 + 0.5 NA intron (NR_155748, intron 1 of 2) Charlie5|DNA|hAT-Charlie 107744 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 167.5-85 chr6 135900506 135900940 + 0.5 NA intron (NM_018945, intron 1 of 12) L1M6|LINE|L1 49022 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 159.75-28 chr13 20669604 20670097 + 0.5 NA intron (NR_148465, intron 19 of 20) intron (NR_148465, intron 19 of 20) -33493 NM_138284 53342 Hs.655142 NM_138284 ENSG00000172458 IL17D IL-17D interleukin 17D protein-coding 158.25-22 chr11 56584858 56585225 + 0.5 NA Intergenic Intergenic -7320 NM_001004741 390167 Hs.553750 NM_001004741 ENSG00000254834 OR5M10 OR11-207 olfactory receptor family 5 subfamily M member 10 protein-coding 190.25-63 chr8 131086670 131087234 + 0.5 NA Intergenic L1MEd|LINE|L1 -46043 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 161.75-3 chr10 19342944 19343368 + 0.5 NA intron (NM_001142308, intron 24 of 39) intron (NM_001142308, intron 24 of 39) 294355 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 188.5-51 chr4 125348945 125349621 + 0.5 NA intron (NM_001291303, intron 1 of 16) intron (NM_001291303, intron 1 of 16) 32871 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 151.75-43 chr2 4754475 4755020 + 0.5 NA Intergenic Intergenic -98525 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 174.25-14 chr11 25071120 25071513 + 0.5 NA intron (NM_001009909, intron 10 of 11) L1PA4|LINE|L1 574263 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 153.75-22 chr16 80637562 80637926 + 0.5 NA intron (NM_152342, intron 2 of 6) L1MA4|LINE|L1 -64936 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 157.25-72 chr4 104237276 104237775 + 0.5 NA Intergenic Intergenic -253440 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 178.75-62 chr7 53188723 53189410 + 0.5 NA Intergenic ERVL-B4-int|LTR|ERVL 153433 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 177.25-12 chr11 79780434 79780883 + 0.5 NA Intergenic Intergenic -339628 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 223.25-14 chr2 167071871 167072449 + 0.5 NA intron (NM_152381, intron 2 of 10) (GT)n|Simple_repeat|Simple_repeat 68795 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 169-54 chr6 6639905 6640537 + 0.5 NA intron (NM_004271, intron 3 of 4) intron (NM_004271, intron 3 of 4) -17395 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 146.25 chr1 32205762 32206117 + 0.5 NA TTS (NM_001301011) TTS (NM_001301011) 268 NM_018134 55721 Hs.274356 NM_018134 ENSG00000160051 IQCC - IQ motif containing C protein-coding 146.75-118 chr8 84648245 84648635 + 0.5 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -57487 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 244.25-27 chr9 117295030 117295595 + 0.5 NA intron (NM_014010, intron 1 of 21) AluSz6|SINE|Alu -114111 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 188.5-25 chr19 14800500 14801185 + 0.5 NA promoter-TSS (NM_198944) promoter-TSS (NM_198944) -706 NM_198944 26664 Hs.466053 NM_198944 ENSG00000127530 OR7C1 CIT-HSP-146E8|HSTPCR86P|OR19-5|OR7C4|TPCR86 olfactory receptor family 7 subfamily C member 1 protein-coding 156.25-82 chr6 139446583 139447049 + 0.5 NA Intergenic Intergenic 27780 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 281.5-12 chr14 74146652 74147681 + 0.5 NA intron (NM_001024674, intron 5 of 5) AluSq2|SINE|Alu 62213 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 177.75-57 chr4 157044968 157045430 + 0.5 NA Intergenic Intergenic -30926 NM_001166061 2743 Hs.32973 NM_000824 ENSG00000109738 GLRB HKPX2 glycine receptor beta protein-coding 180-20 chr13 83433047 83433741 + 0.5 NA Intergenic (TTTATA)n|Simple_repeat|Simple_repeat 448999 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 183.25-28 chr16 47860155 47860729 + 0.5 NA intron (NR_110650, intron 1 of 5) intron (NR_110650, intron 1 of 5) 1861 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 161.5-10 chr1 213993164 213993751 + 0.5 NA intron (NM_002763, intron 1 of 4) intron (NM_002763, intron 1 of 4) 4924 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 184.25-63 chr8 113787346 113787979 + 0.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR -350723 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 199.5-21 chr2 34945727 34946192 + 0.5 NA Intergenic Intergenic 268402 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 198-2 chr1 71756997 71757453 + 0.5 NA intron (NM_173808, intron 3 of 6) intron (NM_173808, intron 3 of 6) 79787 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 201-32 chr5 43609349 43609963 + 0.5 NA intron (NM_001331026, intron 2 of 20) intron (NM_001331026, intron 2 of 20) -6426 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 169.75-24 chr12 74051243 74051896 + 0.5 NA Intergenic Intergenic 241062 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 152.5-59 chr20 1753657 1754113 + 0.5 NA Intergenic L1MA5|LINE|L1 25861 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 179.75-47 chr5 102799843 102800481 + 0.5 NA intron (NR_157231, intron 1 of 14) L2a|LINE|L2 -8036 NM_001364582 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 172.5-88 chrX 88148837 88149303 + 0.5 NA Intergenic Intergenic -598155 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 174.75 chr1 41769859 41770335 + 0.5 NA intron (NM_024503, intron 1 of 8) AluY|SINE|Alu 148825 NM_024503 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 296.25-7 chr14 53356742 53357433 + 0.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 203733 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 150.25-53 chr2 146921355 146921832 + 0.5 NA Intergenic Intergenic 334536 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 151.25-95 chr8 118769863 118770409 + 0.5 NA Intergenic L1MC1|LINE|L1 -148173 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 150.5-65 chr2 151408240 151408696 + 0.5 NA Intergenic Intergenic -1434 NM_001177663 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 154.25-56 chr3 184043299 184043835 + 0.5 NA Intergenic MIRb|SINE|MIR -9480 NM_130770 170572 Hs.632579 NM_130770 ENSG00000178084 HTR3C - 5-hydroxytryptamine receptor 3C protein-coding 238.75-17 chr2 114839090 114839840 + 0.5 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -5917 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 146.5-34 chr15 99218409 99218847 + 0.5 NA exon (NM_001288616, exon 6 of 12) exon (NM_001288616, exon 6 of 12) 30953 NR_109947 64927 Hs.513195 NM_022905 ENSG00000103852 TTC23 HCC-8 tetratricopeptide repeat domain 23 protein-coding 159.75-40 chr17 64647981 64648400 + 0.5 NA intron (NM_022739, intron 1 of 18) intron (NM_022739, intron 1 of 18) 14117 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 175.5-51 chr2 174906369 174906908 + 0.5 NA intron (NM_001025201, intron 6 of 12) intron (NM_001025201, intron 6 of 12) -59020 NM_001206602 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 206.25-20 chr2 194063309 194063969 + 0.5 NA Intergenic Intergenic -280630 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 168-39 chr2 184289843 184290500 + 0.5 NA Intergenic Intergenic -88804 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 153.25-45 chr17 59005793 59006368 + 0.5 NA intron (NR_148346, intron 22 of 23) MER99|DNA|hAT? 100800 NM_001353085 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 206.5-8 chr11 82423177 82423957 + 0.5 NA Intergenic Intergenic -19654 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 159.25-49 chr3 69880013 69880458 + 0.5 NA intron (NM_198159, intron 2 of 9) intron (NM_198159, intron 2 of 9) 14011 NM_198177 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 152.75-108 chr9 29159110 29159640 + 0.5 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 52924 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 191.75-40 chr3 105317528 105318150 + 0.5 NA Intergenic Intergenic -48874 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 149-107 chr9 124408436 124408923 + 0.5 NA intron (NM_002799, intron 4 of 7) intron (NM_002799, intron 4 of 7) 6763 NM_002799 5695 Hs.213470 NM_002799 ENSG00000136930 PSMB7 Z proteasome subunit beta 7 protein-coding 147.75-9 chr1 194742174 194742698 + 0.5 NA Intergenic Intergenic 1346279 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 196.75-30 chr2 207072119 207072753 + 0.5 NA Intergenic L1MA8|LINE|L1 37637 NR_036227 100423036 NR_036227 ENSG00000253008 MIR2355 mir-2355 microRNA 2355 ncRNA 146.75-52 chr2 58650774 58651145 + 0.5 NA intron (NR_033873, intron 1 of 13) MER5A|DNA|hAT-Charlie 130206 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 189-63 chr9 25926922 25927527 + 0.5 NA Intergenic L1MB1|LINE|L1 -139451 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 166.75-88 chr8 41241549 41242043 + 0.5 NA Intergenic L1MCa|LINE|L1 29347 NR_049801 100847068 NR_049801 ENSG00000263372 MIR548AO - microRNA 548ao ncRNA 204.25-30 chr3 78725013 78725442 + 0.5 NA intron (NM_002941, intron 5 of 30) intron (NM_002941, intron 5 of 30) 294232 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 168.5-81 chr5 28254946 28255435 + 0.5 NA Intergenic Intergenic 32475 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 150.75-89 chr6 158580426 158580904 + 0.5 NA intron (NM_020823, intron 2 of 16) intron (NM_020823, intron 2 of 16) -29042 NR_106981 102465694 NR_106981 ENSG00000278571 MIR7161 hsa-mir-7161 microRNA 7161 ncRNA 194.5-22 chr14 67546145 67546743 + 0.5 NA intron (NM_020715, intron 2 of 28) AluSp|SINE|Alu -12594 NM_001348546 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 191.25-27 chr15 58353156 58353840 + 0.5 NA Intergenic Intergenic -78493 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 191.25-68 chrY 11294497 11295007 + 0.5 NA Intergenic Intergenic 1126838 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 171.25-15 chr12 42260680 42261227 + 0.5 NA Intergenic AluSz6|SINE|Alu -22585 NM_001190979 10138 Hs.649195 NM_005748 ENSG00000015153 YAF2 - YY1 associated factor 2 protein-coding 168.5-80 chr5 4074474 4075004 + 0.5 NA Intergenic AluSx|SINE|Alu 478907 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 162-5 chr1 175787265 175787704 + 0.5 NA Intergenic MIR|SINE|MIR -43889 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 166.75-9 chr10 26849979 26850534 + 0.5 NA intron (NM_001178116, intron 1 of 11) Charlie1a|DNA|hAT-Charlie 10831 NM_001348034 10006 Hs.508148 NM_005470 ENSG00000136754 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl interactor 1 protein-coding 186.25-54 chr6 55884301 55884819 + 0.5 NA Intergenic L2a|LINE|L2 -8970 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 160.75-98 chr7 4027404 4028018 + 0.5 NA intron (NM_152744, intron 17 of 44) intron (NM_152744, intron 17 of 44) -101974 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 164.75-16 chr11 66617852 66618282 + 0.5 NA intron (NM_001198846, intron 1 of 1) intron (NM_001198846, intron 1 of 1) 1437 NM_006328 10432 Hs.533712 NM_006328 ENSG00000239306 RBM14 COAA|PSP2|SIP|SYTIP1|TMEM137 RNA binding motif protein 14 protein-coding 151-54 chr21 31447775 31448345 + 0.5 NA intron (NM_001353690, intron 1 of 27) MLT2B4|LTR|ERVL -103706 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 174-66 chr7 116636683 116637151 + 0.5 NA Intergenic Intergenic -22097 NR_120506 100996266 Hs.552122 NR_120506 LINC01510 - long intergenic non-protein coding RNA 1510 ncRNA 175-43 chr5 106240244 106240896 + 0.5 NA Intergenic Intergenic 770444 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 164.5-36 chr2 162389456 162389832 + 0.5 NA intron (NM_033272, intron 12 of 15) intron (NM_033272, intron 12 of 15) 45276 NM_001330271 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 349.25-2 chr14 52607402 52608351 + 0.5 NA intron (NM_001099652, intron 3 of 6) AluSz6|SINE|Alu 55040 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 185.75-54 chr4 31961440 31962123 + 0.5 NA Intergenic Intergenic -35598 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 160.75-72 chr21 31478113 31478568 + 0.5 NA intron (NM_003253, intron 1 of 28) intron (NM_003253, intron 1 of 28) 80747 NM_001353690 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 162.5-23 chr13 45553780 45554247 + 0.5 NA intron (NM_182542, intron 11 of 14) L1MA8|LINE|L1 61726 NM_182542 220081 Hs.668747 NM_182542 ENSG00000165837 ERICH6B FAM194B glutamate rich 6B protein-coding 159.75-55 chr20 55602767 55603160 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -175766 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 190-57 chr6 16085432 16086092 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR -43324 NM_013262 29116 Hs.484738 NM_013262 ENSG00000007944 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 177.25-13 chr11 104817577 104818156 + 0.5 NA Intergenic HERVL40-int|LTR|ERVL 80804 NR_034063 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 163.75-39 chr3 68118506 68119074 + 0.5 NA intron (NM_001252216, intron 2 of 4) L1MB2|LINE|L1 114543 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 156.5-6 chr1 98689177 98689705 + 0.5 NA intron (NM_015976, intron 2 of 8) intron (NM_015976, intron 2 of 8) 27720 NM_001364903 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 164.75-77 chr6 129078964 129079470 + 0.5 NA intron (NM_000426, intron 3 of 64) MER44A|DNA|TcMar-Tigger 196076 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 155-15 chr11 67278720 67279195 + 0.5 NA intron (NM_001619, intron 2 of 20) intron (NM_001619, intron 2 of 20) -10346 NM_001347901 338692 Hs.438673 NM_207354 ENSG00000172932 ANKRD13D - ankyrin repeat domain 13D protein-coding 167.25-58 chr4 161707307 161707653 + 0.5 NA intron (NM_001128428, intron 6 of 14) intron (NM_001128428, intron 6 of 14) -315253 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 206.5-5 chr10 61617324 61617761 + 0.5 NA Intergenic Intergenic -45387 NM_001366909 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 220.5-25 chr3 29802813 29803569 + 0.5 NA intron (NM_001003792, intron 6 of 13) MIRc|SINE|MIR 130965 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 173.25-7 chr10 90845361 90846013 + 0.5 NA intron (NM_019860, intron 1 of 2) intron (NM_019860, intron 1 of 2) 12352 NM_019859 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 232.25-16 chr16 58303970 58304646 + 0.5 NA Intergenic L1PB1|LINE|L1 -9261 NM_001080492 221191 Hs.411239 NM_001080492 ENSG00000103023 PRSS54 CT67|KLKBL4 serine protease 54 protein-coding 150.25-92 chr6 120831297 120831797 + 0.5 NA Intergenic Intergenic 502933 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 211.75-35 chr6 54975912 54976597 + 0.5 NA Intergenic Intergenic 129483 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 195.75-71 chr9 103265789 103266421 + 0.5 NA intron (NR_121578, intron 5 of 9) intron (NR_121578, intron 5 of 9) 58928 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 174.25-52 chr5 31028870 31029354 + 0.5 NA Intergenic Intergenic -164574 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 156.25-86 chr7 51350560 51351046 + 0.5 NA Intergenic MIR|SINE|MIR -33942 NM_001346444 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 152.25-68 chr3 192694852 192695190 + 0.5 NA intron (NM_004113, intron 2 of 5) L1MA9|LINE|L1 32520 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 147.75-60 chr20 37077866 37078429 + 0.5 NA intron (NM_002895, intron 2 of 21) L1MC4|LINE|L1 17850 NM_001323281 5933 Hs.207745 NM_002895 ENSG00000080839 RBL1 CP107|PRB1|p107 RB transcriptional corepressor like 1 protein-coding 172.5-75 chr7 35640816 35641429 + 0.5 NA intron (NM_022373, intron 5 of 8) intron (NM_022373, intron 5 of 8) 54013 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 241.25-8 chr14 32399854 32400797 + 0.5 NA intron (NM_004274, intron 1 of 13) L1MEd|LINE|L1 71027 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 146.5-82 chr4 186422970 186423498 + 0.5 NA intron (NR_033901, intron 6 of 6) AluSg|SINE|Alu 77824 NR_033900 285441 Hs.481369 NR_033900 ENSG00000251165 F11-AS1 - F11 antisense RNA 1 ncRNA 204.25-32 chr3 175615749 175616322 + 0.5 NA intron (NM_207015, intron 10 of 13) (AT)n|Simple_repeat|Simple_repeat 160298 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 177.75-68 chr7 137812545 137813209 + 0.5 NA intron (NM_001321708, intron 1 of 32) intron (NM_001321708, intron 1 of 32) 33455 NM_001321709 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 154-43 chr18 33778360 33778891 + 0.5 NA Intergenic Intergenic 200406 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 188.75-7 chr10 20238717 20239350 + 0.5 NA intron (NM_032812, intron 12 of 13) intron (NM_032812, intron 12 of 13) -312937 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 173.75-29 chr18 35378813 35379327 + 0.5 NA Intergenic L2c|LINE|L2 -1733 NM_001322291 252884 Hs.351005 NM_145756 ENSG00000186496 ZNF396 ZSCAN14 zinc finger protein 396 protein-coding 146.5-62 chr2 222274940 222275418 + 0.5 NA intron (NM_181457, intron 4 of 7) intron (NM_181457, intron 4 of 7) -22968 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 167-72 chr5 111097594 111098057 + 0.5 NA intron (NM_139281, intron 3 of 22) intron (NM_139281, intron 3 of 22) 5653 NM_139281 134430 Hs.533237 NM_139281 ENSG00000134987 WDR36 GLC1G|TA-WDRP|TAWDRP|UTP21 WD repeat domain 36 protein-coding 279.25-14 chr7 29495026 29495895 + 0.5 NA intron (NM_001293081, intron 1 of 6) intron (NM_001293081, intron 1 of 6) 11644 NM_001293081 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 230.25-5 chr1 226405770 226406656 + 0.5 NA intron (NM_001618, intron 1 of 22) Charlie4a|DNA|hAT-Charlie 1880 NM_001618 142 Hs.177766 NM_001618 ENSG00000143799 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly(ADP-ribose) polymerase 1 protein-coding 151.75-60 chr3 8057874 8058326 + 0.5 NA Intergenic MER67D|LTR|ERV1 -41793 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 190.75-2 chr1 72975974 72976511 + 0.5 NA Intergenic Intergenic -329928 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 192.25-5 chr10 17138235 17138945 + 0.5 NA 3' UTR (NM_001321007, exon 12 of 12) 3' UTR (NM_001321007, exon 12 of 12) -8773 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 177.25-42 chr2 224632910 224633439 + 0.5 NA Intergenic Intergenic -47777 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 161.25-65 chr7 146273329 146273809 + 0.5 NA Intergenic MER58A|DNA|hAT-Charlie -500702 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 159.5-60 chr4 34289454 34289964 + 0.5 NA Intergenic Intergenic -19962 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 153.5-60 chr21 20307181 20307594 + 0.5 NA Intergenic Intergenic -48702 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 175.5-87 chr7 45252385 45252997 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 94900 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 154.75-70 chr4 13749684 13750269 + 0.5 NA intron (NR_121681, intron 2 of 3) intron (NR_121681, intron 2 of 3) 94797 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 149-66 chr3 60910764 60911157 + 0.5 NA intron (NR_148922, intron 3 of 3) MLT1K|LTR|ERVL-MaLR -293090 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 166-24 chr14 65432015 65432593 + 0.5 NA intron (NR_038170, intron 1 of 10) intron (NR_038170, intron 1 of 10) 19574 NR_038170 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 169.5-51 chr22 47223855 47224264 + 0.5 NA Intergenic Intergenic -121512 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 169.5-100 chr9 101779522 101780121 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR -41241 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 160.5-75 chr4 110052423 110052851 + 0.5 NA intron (NM_001130721, intron 4 of 4) intron (NM_001130721, intron 4 of 4) 139754 NM_001963 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 147.5-9 chr1 247210188 247210551 + 0.5 NA Intergenic MER57E3|LTR|ERV1 -8309 NR_037480 100500849 NR_037480 ENSG00000283881 MIR3916 mir-3916 microRNA 3916 ncRNA 200-40 chr7 9052096 9052548 + 0.5 NA Intergenic L1MA9|LINE|L1 -581948 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 178-22 chr14 56126077 56126675 + 0.5 NA intron (NM_021255, intron 1 of 5) intron (NM_021255, intron 1 of 5) 7965 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 215.25-31 chr4 52395691 52396267 + 0.5 NA Intergenic L1MD1|LINE|L1 260560 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 219-6 chr12 117600106 117600662 + 0.5 NA intron (NM_173598, intron 5 of 19) intron (NM_173598, intron 5 of 19) -238582 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 294-2 chr4 45230949 45231628 + 0.5 NA Intergenic Intergenic -504654 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 189.75-66 chr6 127209204 127209837 + 0.5 NA Intergenic Intergenic -57162 NM_001242851 81847 Hs.267120 NM_030963 ENSG00000118518 RNF146 - ring finger protein 146 protein-coding 151-6 chr10 23626620 23627105 + 0.5 NA Intergenic Intergenic -67865 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 179-2 chr1 218003751 218004368 + 0.5 NA Intergenic L1M5|LINE|L1 -39446 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 217.25-39 chr6 105187495 105188113 + 0.5 NA Intergenic AluJb|SINE|Alu -7790 NM_022361 64208 Hs.458336 NM_022361 ENSG00000132429 POPDC3 POP3|bA355M14.1 popeye domain containing 3 protein-coding 168.5-43 chr19 28316033 28316628 + 0.5 NA Intergenic Intergenic -290358 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 186.75-64 chr4 64087193 64087802 + 0.5 NA Intergenic L1MB7|LINE|L1 321953 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 196.75-35 chr3 94452940 94453461 + 0.5 NA Intergenic L2c|LINE|L2 390139 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 156.5-34 chr14 43457004 43457491 + 0.5 NA Intergenic L1PA10|LINE|L1 1050036 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 181.25-50 chr5 105357676 105358288 + 0.5 NA Intergenic L1M4|LINE|L1 258508 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 177.25-16 chr12 58527441 58528107 + 0.5 NA Intergenic L2c|LINE|L2 -63928 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 146.75-57 chr2 180742127 180742619 + 0.5 NA intron (NR_104324, intron 3 of 4) L2a|LINE|L2 50269 NR_104321 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 200-9 chr10 118171781 118172406 + 0.5 NA intron (NR_026940, intron 3 of 3) MIR|SINE|MIR -125152 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 182.5-48 chr4 63233301 63233746 + 0.5 NA Intergenic Intergenic -1071758 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 206-9 chr14 64081583 64082165 + 0.5 NA intron (NM_015180, intron 57 of 114) AluY|SINE|Alu 13251 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 157.5-35 chr15 76725963 76726524 + 0.5 NA intron (NR_148227, intron 17 of 32) L1MB3|LINE|L1 135701 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 163.5-16 chr10 89141115 89141598 + 0.5 NA Intergenic Intergenic 65961 NM_003956 9023 Hs.47357 NM_003956 ENSG00000138135 CH25H C25H cholesterol 25-hydroxylase protein-coding 152.25-23 chr14 32174936 32175467 + 0.5 NA Intergenic L1PB4|LINE|L1 -26844 NR_104084 101954275 NR_104084 ENSG00000201654 RNU6-7 U6-7 RNA, U6 small nuclear 7 snRNA 202.25-43 chr3 160097254 160098025 + 0.5 NA intron (NR_108088, intron 3 of 9) AluSz|SINE|Alu 76990 NR_104132 730109 Hs.99333 NR_104132 LINC01100 - long intergenic non-protein coding RNA 1100 ncRNA 145.75-94 chr5 27139404 27139769 + 0.5 NA Intergenic L1MC2|LINE|L1 -101000 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 155.75-34 chr14 64139675 64140283 + 0.5 NA exon (NM_182914, exon 80 of 116) exon (NM_182914, exon 80 of 116) -44854 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 242.75-5 chr13 77028296 77029172 + 0.5 NA Intergenic Intergenic -1575 NM_012158 26224 Hs.508284 NM_012158 ENSG00000005812 FBXL3 FBL3|FBL3A|FBXL3A|IDDSFAS F-box and leucine rich repeat protein 3 protein-coding 165-14 chr11 39167460 39168041 + 0.5 NA Intergenic L1MEg|LINE|L1 518892 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 160.75-93 chr6 38374319 38374875 + 0.5 NA intron (NM_052893, intron 7 of 11) intron (NM_052893, intron 7 of 11) -106999 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 159.75-97 chr8 130223913 130224527 + 0.5 NA intron (NM_001362925, intron 4 of 29) intron (NM_001362925, intron 4 of 29) 72313 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 148-10 chr1 174014139 174014652 + 0.5 NA Intergenic MER3|DNA|hAT-Charlie -21323 NM_172071 149041 Hs.30258 NM_172071 ENSG00000135870 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 173.25-71 chr7 134993295 134993965 + 0.5 NA exon (NM_178563, exon 4 of 17) exon (NM_178563, exon 4 of 17) 7122 NM_001345850 340351 Hs.648616 NM_178563 ENSG00000146856 AGBL3 CCP3 ATP/GTP binding protein like 3 protein-coding 155.25-37 chr2 6770390 6771000 + 0.5 NA promoter-TSS (NR_038369) promoter-TSS (NR_038369) -384 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 219.75-37 chr7 7717543 7718269 + 0.5 NA intron (NM_002947, intron 1 of 7) intron (NM_002947, intron 1 of 7) 701 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 171-61 chr7 10282968 10283516 + 0.5 NA Intergenic L2c|LINE|L2 -419434 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 187.25-44 chr4 32460130 32460804 + 0.5 NA Intergenic Intergenic 109429 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 213.25-36 chr5 52040691 52041190 + 0.5 NA intron (NR_147166, intron 3 of 3) intron (NR_147166, intron 3 of 3) 32909 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 187-61 chr9 23021626 23022087 + 0.5 NA Intergenic L1MC2|LINE|L1 375656 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 168.25-15 chr13 62345624 62346216 + 0.5 NA Intergenic Intergenic 22263 NR_047038 100874180 Hs.7415 NR_047038 ENSG00000229307 LINC00459 - long intergenic non-protein coding RNA 459 ncRNA 194.75 chr1 38393902 38394450 + 0.5 NA Intergenic MIRb|SINE|MIR -81020 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 154-32 chr14 60772932 60773520 + 0.5 NA intron (NM_001177963, intron 1 of 6) AluSc5|SINE|Alu 38465 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 186-24 chr2 193252498 193252936 + 0.5 NA Intergenic AluSp|SINE|Alu 502872 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 153.5-66 chr3 150268075 150268505 + 0.5 NA intron (NR_110186, intron 2 of 3) intron (NR_110186, intron 2 of 3) 29590 NR_110167 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 171-50 chr5 6809560 6810215 + 0.5 NA intron (NR_146281, intron 1 of 1) intron (NR_146281, intron 1 of 1) 14007 NR_146281 109729133 Hs.582455 NR_146281 ENSG00000251365 LINC02236 - long intergenic non-protein coding RNA 2236 ncRNA 163.75-71 chr8 107924719 107925264 + 0.5 NA intron (NM_001282863, intron 4 of 4) intron (NM_001282863, intron 4 of 4) 156948 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 193.5-27 chr16 66657226 66657762 + 0.5 NA intron (NM_181521, intron 1 of 3) L1MC4|LINE|L1 39249 NM_178818 146223 Hs.643961 NM_178818 ENSG00000183723 CMTM4 CKLFSF4 CKLF like MARVEL transmembrane domain containing 4 protein-coding 297.25-2 chr12 99538504 99539526 + 0.5 NA intron (NM_152788, intron 9 of 25) L1MA1|LINE|L1 -108738 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 173.75-33 chr2 60724106 60724529 + 0.5 NA Intergenic L1MD|LINE|L1 -31951 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 205.75-45 chr4 65458715 65459166 + 0.5 NA intron (NM_001281767, intron 5 of 16) intron (NM_001281767, intron 5 of 16) 210548 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 229.5-38 chr7 13686741 13687303 + 0.5 NA Intergenic Intergenic 299492 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 200.5-57 chr7 93448867 93449510 + 0.5 NA intron (NM_001164738, intron 7 of 12) intron (NM_001164738, intron 7 of 12) 33667 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 154.5-71 chr4 62366643 62367128 + 0.5 NA Intergenic Intergenic -205120 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 223-14 chr17 39756159 39756868 + 0.5 NA Intergenic Intergenic 16546 NM_001242443 2886 Hs.86859 NM_005310 ENSG00000141738 GRB7 - growth factor receptor bound protein 7 protein-coding 150.5-81 chr4 54814844 54815241 + 0.5 NA Intergenic Intergenic 157114 NM_001093772 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 173-22 chr12 15339283 15339792 + 0.5 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 17029 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 197.75-65 chr6 156744728 156745320 + 0.5 NA Intergenic Intergenic -32831 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 219.25-9 chr11 92572245 92572838 + 0.5 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 220445 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 211.5-35 chr3 55395458 55396170 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 85584 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 236.25-6 chr11 13448714 13449292 + 0.5 NA intron (NM_032320, intron 1 of 8) intron (NM_032320, intron 1 of 8) -8724 NM_001297742 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 207.75-5 chr11 48225409 48225845 + 0.5 NA Intergenic AluY|SINE|Alu 8817 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 206-25 chr4 159508824 159509541 + 0.5 NA Intergenic Intergenic 241373 NM_001351728 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 250.5-20 chr3 40400333 40401074 + 0.5 NA intron (NR_040100, intron 2 of 3) intron (NR_040100, intron 2 of 3) 13519 NM_001291960 956 Hs.441145 NM_001248 ENSG00000168032 ENTPD3 CD39L3|HB6|NTPDase-3 ectonucleoside triphosphate diphosphohydrolase 3 protein-coding 221-19 chr3 95048710 95049491 + 0.5 NA Intergenic Intergenic 110837 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 160.5-10 chr1 219221993 219222483 + 0.5 NA Intergenic Intergenic 47269 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 147-6 chr1 198143956 198144423 + 0.5 NA Intergenic Intergenic -12809 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 195.5-16 chr14 75063083 75063497 + 0.5 NA intron (NR_126393, intron 2 of 3) intron (NR_126393, intron 2 of 3) 734 NM_001302616 97 Hs.18573 NM_001107 ENSG00000119640 ACYP1 ACYPE acylphosphatase 1 protein-coding 170.75-17 chr13 60135714 60136128 + 0.5 NA intron (NM_001258369, intron 1 of 26) intron (NM_001258369, intron 1 of 26) -8777 NR_046540 100874196 Hs.662188 NR_046540 ENSG00000223815 DIAPH3-AS2 DIPAH3-AS2 DIAPH3 antisense RNA 2 ncRNA 186.5 chr1 26153301 26153824 + 0.5 NA Intergenic AluJr|SINE|Alu -5517 NM_024869 79927 Hs.694119 NM_024869 ENSG00000197245 FAM110D GRRP1 family with sequence similarity 110 member D protein-coding 150-68 chr4 65888589 65889176 + 0.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -218387 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 160.75-50 chr18 28483972 28484398 + 0.5 NA Intergenic MER66B|LTR|ERV1 -307055 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 164.75-96 chrX 97887993 97888549 + 0.5 NA Intergenic L1ME2|LINE|L1 -323736 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 154.25-83 chr8 26722722 26723090 + 0.5 NA Intergenic L1MD2|LINE|L1 142749 NM_033303 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 151.5-42 chr18 55594454 55595015 + 0.5 NA intron (NM_001243226, intron 2 of 20) intron (NM_001243226, intron 2 of 20) -4923 NM_001369576 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 169-70 chr8 119168969 119169312 + 0.5 NA Intergenic Intergenic -39223 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 160.25-85 chr9 130945286 130945727 + 0.5 NA Intergenic L1MEd|LINE|L1 -6259 NM_032843 84929 Hs.133205 NM_032843 ENSG00000130720 FIBCD1 - fibrinogen C domain containing 1 protein-coding 152.25-11 chr10 13047623 13048155 + 0.5 NA intron (NM_001282658, intron 5 of 6) MER4C|LTR|ERV1 -46176 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 215.25-16 chr17 62017853 62018381 + 0.5 NA intron (NM_005121, intron 8 of 29) Charlie1a|DNA|hAT-Charlie 47161 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 197.75-4 chr1 118935200 118935938 + 0.5 NA intron (NM_152380, intron 1 of 7) intron (NM_152380, intron 1 of 7) 52774 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 195.75-20 chr13 91593615 91594295 + 0.5 NA intron (NM_004466, intron 2 of 7) intron (NM_004466, intron 2 of 7) 195334 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 146-21 chr14 60850730 60851163 + 0.5 NA intron (NM_002431, intron 6 of 7) intron (NM_002431, intron 6 of 7) 116185 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 166.5-20 chr14 55843469 55843873 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -46997 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 171-44 chr3 192971618 192972003 + 0.5 NA Intergenic L1MB5|LINE|L1 -53954 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 165.75-72 chr4 75238444 75238929 + 0.5 NA Intergenic Intergenic -115390 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 184-33 chr21 20099872 20100501 + 0.5 NA Intergenic AluY|SINE|Alu 158499 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 170-43 chr4 44983260 44983840 + 0.5 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -256916 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 158-52 chr4 26351989 26352423 + 0.5 NA intron (NM_001363577, intron 1 of 10) MLT1A0|LTR|ERVL-MaLR 30978 NM_001363577 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 168.25-21 chr14 80919263 80919649 + 0.5 NA intron (NM_152446, intron 2 of 24) L1ME3Cz|LINE|L1 22282 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 156.25-43 chr2 182624385 182624962 + 0.5 NA Intergenic MER74C|LTR|ERVL -91584 NR_073367 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 163-53 chr20 8182412 8182935 + 0.5 NA intron (NM_182734, intron 2 of 32) AluSx1|SINE|Alu 50407 NM_015192 23236 Hs.431173 NM_015192 ENSG00000182621 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B phospholipase C beta 1 protein-coding 183-42 chr5 148098737 148099195 + 0.5 NA intron (NM_006846, intron 11 of 32) intron (NM_006846, intron 11 of 32) 34986 NM_001127699 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 152.75-19 chr11 63220041 63220395 + 0.5 NA intron (NM_199352, intron 2 of 8) intron (NM_199352, intron 2 of 8) 9434 NM_199352 387601 Hs.332119 NM_199352 ENSG00000196600 SLC22A25 HIMTP|UST6 solute carrier family 22 member 25 protein-coding 196.75-46 chr5 152105822 152106550 + 0.5 NA intron (NR_109876, intron 1 of 2) intron (NR_109876, intron 1 of 2) 147288 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 182.5-44 chr4 33019924 33020530 + 0.5 NA Intergenic Intergenic 669189 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 179-8 chr12 6205267 6205951 + 0.5 NA intron (NM_001769, intron 1 of 7) (TGTT)n|Simple_repeat|Simple_repeat 5209 NM_001769 928 Hs.114286 NM_001769 ENSG00000010278 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 167.75-63 chr4 37165145 37165521 + 0.5 NA Intergenic Intergenic 76658 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 242.25-9 chr18 4628904 4629475 + 0.5 NA Intergenic L2a|LINE|L2 -173882 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 214.5-51 chr9 27132603 27133243 + 0.5 NA intron (NM_001290078, intron 1 of 20) intron (NM_001290078, intron 1 of 20) 23782 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 150.25-17 chr10 107815246 107815606 + 0.5 NA Intergenic Intergenic 253867 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 147.25-101 chr8 114324977 114325517 + 0.5 NA Intergenic Tigger2|DNA|TcMar-Tigger -888308 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 176.75-24 chr16 23932579 23933045 + 0.5 NA intron (NM_002738, intron 2 of 16) MLT1O|LTR|ERVL-MaLR 96829 NM_212535 5579 Hs.460355 NM_002738 ENSG00000166501 PRKCB PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2 protein kinase C beta protein-coding 185.75-50 chr3 45355260 45355731 + 0.5 NA Intergenic LTR101_Mam|LTR|ERVL -33081 NM_001368263 23395 Hs.526975 NM_015340 ENSG00000011376 LARS2 HLASA|LEURS|PRLTS4|mtLeuRS leucyl-tRNA synthetase 2, mitochondrial protein-coding 205-21 chr2 9670564 9671346 + 0.5 NA Intergenic AluSz|SINE|Alu -39958 NM_006826 10971 Hs.74405 NM_006826 ENSG00000134308 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta protein-coding 155.5-15 chr11 41935295 41935725 + 0.5 NA Intergenic LTR73|LTR|ERV1 149948 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 169.75-70 chr7 69304103 69304629 + 0.5 NA Intergenic Intergenic 293258 NR_148926 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 212.75-33 chr8 27423730 27424518 + 0.5 NA intron (NM_173175, intron 5 of 29) intron (NM_173175, intron 5 of 29) -9246 NR_106901 102465507 NR_106901 ENSG00000273836 MIR6842 hsa-mir-6842 microRNA 6842 ncRNA 176.5-93 chr8 121888917 121889591 + 0.5 NA Intergenic L1PA16|LINE|L1 -247814 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 165.75-59 chr3 43425102 43425603 + 0.5 NA intron (NM_001204831, intron 11 of 12) intron (NM_001204831, intron 11 of 12) -73390 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 149.5-100 chr9 98601442 98601945 + 0.5 NA intron (NM_005458, intron 1 of 18) Charlie18a|DNA|hAT-Charlie 107242 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 199.25-31 chr2 23363631 23364154 + 0.5 NA Intergenic L1ME3A|LINE|L1 -21287 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 176.75-71 chr5 121807312 121807742 + 0.5 NA Intergenic Intergenic -44355 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 175.25-24 chr15 57779004 57779504 + 0.5 NA Intergenic Intergenic 72540 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 184-13 chr13 76589338 76589775 + 0.5 NA Intergenic Intergenic 296849 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 148.25-45 chr2 63375133 63375502 + 0.5 NA intron (NM_001354045, intron 12 of 12) intron (NM_001354045, intron 12 of 12) 62690 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 185-71 chr8 117716929 117717517 + 0.5 NA Intergenic L1ME3|LINE|L1 196510 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 155.5-53 chr2 172861404 172861990 + 0.5 NA intron (NM_001282899, intron 1 of 27) intron (NM_001282899, intron 1 of 27) 1659 NM_001282900 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 153.75-24 chr17 61878998 61879542 + 0.5 NA intron (NM_001351695, intron 17 of 24) intron (NM_001351695, intron 17 of 24) -15711 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 146.5-41 chr17 68914398 68914711 + 0.5 NA intron (NM_001288985, intron 17 of 39) L1MA3|LINE|L1 40838 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 179.25-28 chr13 93112106 93112673 + 0.5 NA Intergenic Intergenic 67048 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 157.75-3 chr1 73603738 73604358 + 0.5 NA Intergenic Intergenic -70631 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 150-65 chr3 196636150 196636741 + 0.5 NA Intergenic Intergenic -3249 NM_198565 375387 Hs.702186 NM_198565 ENSG00000174004 NRROS ELLP3030|GARPL1|LRRC33|UNQ3030 negative regulator of reactive oxygen species protein-coding 161.5-77 chr5 122964600 122965109 + 0.5 NA intron (NM_014035, intron 3 of 6) L1MC5|LINE|L1 71871 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 254.75-29 chrX 49816145 49817094 + 0.5 NA Intergenic Intergenic -12641 NM_001318877 9506 Hs.441038 NM_007003 ENSG00000101951 PAGE4 CT16.7|GAGE-9|GAGEC1|JM-27|JM27|PAGE-1|PAGE-4 PAGE family member 4 protein-coding 157.25-71 chr4 104229896 104230413 + 0.5 NA Intergenic LTR41C|LTR|ERVL -260811 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 154.5-79 chr5 165842116 165842648 + 0.5 NA Intergenic Intergenic 1083988 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 207.5-25 chr2 160290519 160291106 + 0.5 NA intron (NM_002897, intron 6 of 13) intron (NM_002897, intron 6 of 13) -18917 NR_103775 100505984 Hs.729532 NR_103775 ENSG00000285373 LINC02478 - long intergenic non-protein coding RNA 2478 ncRNA 180-37 chr2 217484952 217485576 + 0.5 NA intron (NR_026597, intron 2 of 12) L1MEf|LINE|L1 202531 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 157.5-16 chr12 40350892 40351391 + 0.5 NA intron (NM_198578, intron 43 of 50) intron (NM_198578, intron 43 of 50) -42253 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 220.25-34 chr5 28778046 28778601 + 0.5 NA Intergenic MLT1E2|LTR|ERVL-MaLR -148547 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 212.5-36 chr4 58246661 58247200 + 0.5 NA Intergenic Intergenic 289398 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 204.5-41 chr7 4425870 4426510 + 0.5 NA Intergenic Intergenic -256105 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 212.25-9 chr10 57423791 57424471 + 0.5 NA Intergenic LTR40b|LTR|ERVL -119572 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 214.75-49 chr8 16397440 16397949 + 0.5 NA Intergenic Intergenic -204903 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 226.5-7 chr14 58812537 58813281 + 0.5 NA Intergenic Intergenic -15379 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 150.5-119 chr8 84973521 84973990 + 0.5 NA Intergenic L1ME2|LINE|L1 -133483 NM_001349636 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 215.5-36 chr4 10360198 10361050 + 0.5 NA Intergenic Intergenic 96802 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 199.25-66 chr8 83050171 83050699 + 0.5 NA Intergenic L1ME3D|LINE|L1 138331 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 150.75-30 chr18 14020557 14021070 + 0.5 NA Intergenic Intergenic -105106 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 148.5-60 chr22 33075099 33075592 + 0.5 NA Intergenic Intergenic -16964 NM_001135774 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 170-7 chr1 174508937 174509453 + 0.5 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) 61231 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 197-23 chr2 125071634 125072365 + 0.5 NA Intergenic L1M2|LINE|L1 1045986 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 195.5-77 chrX 93283847 93284454 + 0.5 NA Intergenic Tigger3a|DNA|TcMar-Tigger 389428 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 176-19 chr16 27887317 27887804 + 0.5 NA intron (NM_001109763, intron 2 of 6) L2c|LINE|L2 597 NM_144675 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 171.75-95 chr9 79783167 79783793 + 0.5 NA Intergenic AluSc|SINE|Alu -41050 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 200.25-29 chr2 49051491 49052192 + 0.5 NA intron (NM_000145, intron 2 of 9) L1ME2|LINE|L1 -7762 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 186-35 chr4 91453077 91453691 + 0.5 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 823918 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 244-22 chr3 184710233 184710837 + 0.5 NA 3' UTR (NM_022149, exon 1 of 1) 3' UTR (NM_022149, exon 1 of 1) 1529 NM_022149 64110 Hs.306123 NM_022149 ENSG00000177383 MAGEF1 MAGE-F1 MAGE family member F1 protein-coding 183 chr1 80055024 80055524 + 0.5 NA Intergenic Intergenic -480481 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 294.75-6 chr2 73298097 73298988 + 0.5 NA Intergenic MIR|SINE|MIR -4994 NM_001965 1961 Hs.3052 NM_001965 ENSG00000135625 EGR4 AT133|NGFI-C|NGFIC|PAT133 early growth response 4 protein-coding 149-76 chr4 94808714 94809294 + 0.5 NA intron (NM_001203, intron 1 of 12) AluSg|SINE|Alu 51049 NM_001203 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 192-7 chr1 229113584 229114267 + 0.5 NA Intergenic L2b|LINE|L2 60876 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 206-22 chr3 56881281 56881879 + 0.5 NA intron (NM_001128615, intron 4 of 12) intron (NM_001128615, intron 4 of 12) 34856 NM_001289698 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 187-13 chr14 59875499 59876010 + 0.5 NA Intergenic L1MA3|LINE|L1 -4978 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 190-26 chr2 107108264 107108752 + 0.5 NA Intergenic Intergenic -221399 NM_001142352 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 170.25-10 chr11 105400097 105400615 + 0.5 NA Intergenic L1PA16|LINE|L1 -209717 NM_001077243 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 159.5-85 chr7 42045462 42045871 + 0.5 NA intron (NM_000168, intron 5 of 14) intron (NM_000168, intron 5 of 14) 191543 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 176-34 chr2 165748475 165748961 + 0.5 NA 3' UTR (NM_004482, exon 11 of 11) 3' UTR (NM_004482, exon 11 of 11) 45529 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 173-88 chr8 124822566 124823251 + 0.5 NA promoter-TSS (NR_039809) promoter-TSS (NR_039809) -850 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 259.5-15 chr5 78153736 78154458 + 0.5 NA intron (NM_003664, intron 14 of 26) L1M1|LINE|L1 140601 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 149.5-91 chr8 15339032 15339457 + 0.5 NA Intergenic MER94|DNA|hAT-Blackjack -100813 NM_001322879 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 161.25-32 chr18 60672210 60672708 + 0.5 NA Intergenic Intergenic -299684 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 157.25-20 chr14 56154266 56154827 + 0.5 NA intron (NM_021255, intron 1 of 5) THE1D|LTR|ERVL-MaLR 36135 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 189-28 chr2 53160643 53161310 + 0.5 NA Intergenic A-rich|Low_complexity|Low_complexity -458361 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 154-76 chr4 118726179 118726589 + 0.5 NA intron (NM_014822, intron 22 of 22) L2|LINE|L2 40992 NM_020961 57721 Hs.596872 NM_020961 ENSG00000145388 METTL14 hMETTL14 methyltransferase like 14 protein-coding 188-46 chr4 88728016 88728631 + 0.5 NA non-coding (NR_002806, exon 5 of 5) non-coding (NR_002806, exon 5 of 5) 18534 NR_002806 285512 Hs.744957 NR_002806 ENSG00000248019 FAM13A-AS1 FAM13A1OS|FAM13AOS|NCRNA00039 FAM13A antisense RNA 1 ncRNA 164-64 chr5 96826614 96827067 + 0.5 NA Intergenic Intergenic -12695 NM_001198541 51752 Hs.666524 NM_016442 ENSG00000164307 ERAP1 A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP endoplasmic reticulum aminopeptidase 1 protein-coding 191.75-28 chr17 70279956 70280631 + 0.5 NA Intergenic AluJb|SINE|Alu 110758 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 157.5-103 chr8 86011323 86011751 + 0.5 NA Intergenic MLT1F|LTR|ERVL-MaLR 58131 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 153.5-63 chr3 48391717 48392329 + 0.5 NA intron (NM_207102, intron 10 of 10) L1P4|LINE|L1 19804 NM_001159929 285231 Hs.288793 NM_207102 ENSG00000164049 FBXW12 FBW12|FBXO12|FBXO35 F-box and WD repeat domain containing 12 protein-coding 170-47 chr4 175869988 175870377 + 0.5 NA intron (NR_048571, intron 1 of 5) intron (NR_048571, intron 1 of 5) -57068 NM_201591 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 150.75-32 chr18 42952339 42952777 + 0.5 NA intron (NM_001272077, intron 3 of 5) L1MA10|LINE|L1 163127 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 210.5-30 chr4 11524096 11524663 + 0.5 NA Intergenic L1ME1|LINE|L1 -95485 NM_005114 9957 Hs.507348 NM_005114 ENSG00000002587 HS3ST1 3OST|3OST1 heparan sulfate-glucosamine 3-sulfotransferase 1 protein-coding 167-82 chr8 18957838 18958187 + 0.5 NA intron (NM_015310, intron 1 of 15) L1ME3G|LINE|L1 55691 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 191.75-29 chr19 36516910 36517427 + 0.5 NA intron (NM_001166038, intron 2 of 2) AluJr4|SINE|Alu 11103 NM_001166036 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 153.75-83 chr8 23804772 23805123 + 0.5 NA Intergenic Zaphod|DNA|hAT-Tip100 49859 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 152.75-98 chr8 14338720 14339089 + 0.5 NA intron (NM_001322881, intron 2 of 6) intron (NM_001322881, intron 2 of 6) 514606 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 225.5-22 chr2 129692745 129693593 + 0.5 NA Intergenic L1MB8|LINE|L1 184322 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 176.25-38 chr2 77464893 77465388 + 0.5 NA intron (NR_146416, intron 1 of 1) L2a|LINE|L2 57236 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 171.75-82 chr8 3472168 3472757 + 0.5 NA intron (NM_033225, intron 11 of 69) intron (NM_033225, intron 11 of 69) -744011 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 177.5-5 chr1 160397459 160398161 + 0.5 NA Intergenic Intergenic -2754 NM_020335 57216 Hs.99477 NM_020335 ENSG00000162738 VANGL2 LPP1|LTAP|STB1|STBM|STBM1 VANGL planar cell polarity protein 2 protein-coding 163.75-12 chr11 16940137 16940542 + 0.5 NA intron (NM_001329630, intron 3 of 26) AluSx|SINE|Alu -14317 NR_145810 109623465 NR_145810 SNORD147 - small nucleolar RNA, C/D box 147 snoRNA 154.75-82 chr5 36772950 36773327 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL 103556 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 176-21 chr16 65438962 65439497 + 0.5 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 137071 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 180-65 chr7 135683525 135684227 + 0.5 NA intron (NM_001318192, intron 15 of 15) intron (NM_001318192, intron 15 of 15) 21362 NM_001130929 647087 Hs.200022 NM_001130929 ENSG00000243317 STMP1 C7orf73|PL-5283 short transmembrane mitochondrial protein 1 protein-coding 163-43 chr2 58987616 58988076 + 0.5 NA intron (NR_033873, intron 6 of 13) L1MEd|LINE|L1 -229862 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 204.25-26 chr2 183081229 183081745 + 0.5 NA intron (NR_135688, intron 1 of 2) AluJb|SINE|Alu 2740 NR_135688 142679 Hs.132237 NM_080876 ENSG00000162999 DUSP19 DUSP17|LMWDSP3|SKRP1|TS-DSP1 dual specificity phosphatase 19 protein-coding 213.75-23 chr4 92520831 92521525 + 0.5 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 216779 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 177-68 chr8 113230781 113231475 + 0.5 NA intron (NM_001363185, intron 3 of 66) intron (NM_001363185, intron 3 of 66) 146024 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 190.5-64 chr8 106910959 106911694 + 0.5 NA Intergenic Intergenic -141082 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 153.25-86 chr4 89335011 89335340 + 0.5 NA Intergenic Intergenic -27375 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 154.25-63 chr4 162786659 162787164 + 0.5 NA Intergenic LTR33|LTR|ERVL 306717 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 150.25-100 chr7 90177663 90178199 + 0.5 NA intron (NR_110029, intron 2 of 2) L1MEh|LINE|L1 23462 NM_012449 26872 Hs.61635 NM_012449 ENSG00000164647 STEAP1 PRSS24|STEAP STEAP family member 1 protein-coding 175.5-21 chr12 81777191 81777706 + 0.5 NA Intergenic Intergenic -18098 NM_003625 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 199.25-54 chr5 133082063 133082728 + 0.5 NA intron (NM_002154, intron 7 of 18) L1MB8|LINE|L1 30382 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 208.5-14 chr12 48181650 48182148 + 0.5 NA Intergenic Intergenic -1745 NM_001013635 387856 Hs.251699 NM_001013635 ENSG00000177875 CCDC184 C12orf68 coiled-coil domain containing 184 protein-coding 170.75-53 chr5 45359994 45360521 + 0.5 NA intron (NM_021072, intron 4 of 7) intron (NM_021072, intron 4 of 7) 336123 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 205.25-38 chr8 43313280 43313802 + 0.5 NA intron (NM_001005365, intron 6 of 13) intron (NM_001005365, intron 6 of 13) 21099 NM_001005365 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 180.75-36 chr2 222594358 222594884 + 0.5 NA intron (NR_130154, intron 17 of 17) MER106B|DNA|hAT-Charlie 61471 NM_005687 10056 Hs.471452 NM_005687 ENSG00000116120 FARSB FARSLB|FRSB|HSPC173|NEDBLLA|PheHB|PheRS|RILDBC phenylalanyl-tRNA synthetase subunit beta protein-coding 161.25-38 chr2 100204406 100204862 + 0.5 NA Intergenic Intergenic -3620 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 203.75-56 chrX 57001755 57002197 + 0.5 NA Intergenic L1MB4|LINE|L1 -6435 NM_001010862 169981 Hs.522672 NM_001010862 ENSG00000204271 SPIN3 SPIN-3|TDRD27|bA445O16.1 spindlin family member 3 protein-coding 178.25-76 chr9 82459857 82460302 + 0.5 NA Intergenic FAM|SINE|Alu 471307 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 145.75-4 chr1 91746135 91746632 + 0.5 NA intron (NR_036634, intron 5 of 17) intron (NR_036634, intron 5 of 17) 139768 NR_036634 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 239.25-3 chr1 116009883 116010730 + 0.5 NA intron (NM_018420, intron 2 of 11) intron (NM_018420, intron 2 of 11) -33030 NR_125970 101928977 Hs.627914 NR_125970 LOC101928977 - uncharacterized LOC101928977 ncRNA 159.25-9 chr11 69410110 69410697 + 0.5 NA Intergenic Intergenic -15252 NM_001319657 102724265 Hs.448669 NM_001319657 LOC102724265 - uncharacterized LOC102724265 protein-coding 235.5-19 chr20 52519565 52520109 + 0.5 NA Intergenic L1MD1|LINE|L1 -101001 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 163.25-19 chr11 86681989 86682415 + 0.5 NA Intergenic Intergenic -9566 NM_001351934 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 198.5-2 chr1 45070558 45071169 + 0.5 NA intron (NM_020883, intron 2 of 13) L2b|LINE|L2 58609 NR_036510 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 187-35 chr4 63960181 63960780 + 0.5 NA Intergenic Intergenic 448970 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 180-55 chr5 148215566 148216121 + 0.5 NA TTS (NM_205841) TTS (NM_205841) 12801 NM_205841 404203 Hs.334274 NM_205841 ENSG00000178172 SPINK6 BUSI2|UNQ844 serine peptidase inhibitor, Kazal type 6 protein-coding 157.25-85 chr6 133045735 133046361 + 0.5 NA Intergenic MER33|DNA|hAT-Charlie -42032 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 175.25-14 chr12 3696770 3697459 + 0.5 NA intron (NM_001144958, intron 3 of 19) intron (NM_001144958, intron 3 of 19) 55995 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 207.5-6 chr10 57232685 57233426 + 0.5 NA Intergenic Intergenic 71504 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 168.75-34 chr18 10847938 10848410 + 0.5 NA intron (NM_022068, intron 7 of 51) intron (NM_022068, intron 7 of 51) -88525 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 237-2 chr15 82977448 82978191 + 0.5 NA Intergenic Intergenic -8391 NM_031452 83640 Hs.80624 NM_031452 ENSG00000169612 RAMAC C15orf18|FAM103A1|HsT19360|RAM|RAMMET RNA guanine-7 methyltransferase activating subunit protein-coding 269.25-20 chr7 110950702 110951277 + 0.5 NA intron (NM_032549, intron 4 of 5) L1MB1|LINE|L1 -140017 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 208.25-4 chr1 99155714 99156225 + 0.5 NA Intergenic Intergenic -108323 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 174.25-5 chr10 26467998 26468383 + 0.5 NA intron (NM_019043, intron 2 of 14) L2c|LINE|L2 29849 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 154.25-91 chr9 77329812 77330289 + 0.5 NA intron (NM_001018038, intron 45 of 68) AluJb|SINE|Alu -117599 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 154.5-26 chr14 42009911 42010482 + 0.5 NA Intergenic HAL1|LINE|L1 403340 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 162.75-75 chr6 134358514 134358878 + 0.5 NA Intergenic Intergenic -40638 NM_001143676 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 147-109 chr8 72820988 72821466 + 0.5 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 89182 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 163.75-69 chr8 85040085 85040681 + 0.5 NA Intergenic LTR85b|LTR|Gypsy? -66855 NM_001349636 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 174.75-46 chr4 63758523 63759016 + 0.5 NA Intergenic Intergenic 650681 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 232.5-22 chr2 223518879 223519679 + 0.5 NA Intergenic L1MB7|LINE|L1 83082 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 198.5-23 chr16 2895503 2896081 + 0.5 NA intron (NM_001142499, intron 2 of 3) intron (NM_001142499, intron 2 of 3) 12577 NM_138439 114984 Hs.534525 NM_138439 ENSG00000162076 FLYWCH2 - FLYWCH family member 2 protein-coding 191.75-68 chr9 22039372 22039955 + 0.5 NA intron (NR_003529, intron 3 of 18) intron (NR_003529, intron 3 of 18) -30350 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 172.5-29 chr16 78228524 78228989 + 0.5 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 129102 NM_016373 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 210-32 chr20 18947325 18947747 + 0.5 NA Intergenic LTR103_Mam|LTR|ERV1? -117333 NR_161342 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 148.5-35 chr18 7244024 7244451 + 0.5 NA Intergenic Intergenic 13133 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 153.5-119 chrX 25778479 25778985 + 0.5 NA Intergenic L1MEg|LINE|L1 -359611 NM_173699 286514 Hs.350683 NM_173699 ENSG00000176774 MAGEB18 - MAGE family member B18 protein-coding 180-33 chr2 80091848 80092453 + 0.5 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 212602 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 170.75-26 chr2 9439183 9439858 + 0.5 NA intron (NM_016207, intron 7 of 17) intron (NM_016207, intron 7 of 17) 15866 NM_016207 51692 Hs.515972 NM_016207 ENSG00000119203 CPSF3 CPSF-73|CPSF73 cleavage and polyadenylation specific factor 3 protein-coding 206-28 chr5 172194794 172195453 + 0.5 NA intron (NM_001171183, intron 1 of 3) intron (NM_001171183, intron 1 of 3) 951 NM_001171183 285588 Hs.716824 NM_001171183 ENSG00000214360 EFCAB9 - EF-hand calcium binding domain 9 protein-coding 169.5-89 chr8 26451365 26451868 + 0.5 NA Intergenic Intergenic 61203 NM_001330491 665 Hs.131226 NM_004331 ENSG00000104765 BNIP3L BNIP3a|NIX BCL2 interacting protein 3 like protein-coding 181.25-51 chr5 145850342 145850882 + 0.5 NA Intergenic MER113A|DNA|hAT-Charlie -15270 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 171-60 chr6 140194492 140194994 + 0.5 NA Intergenic MER41-int|LTR|ERV1 -10509 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 189-22 chr15 69640488 69641201 + 0.5 NA intron (NR_126437, intron 3 of 5) L1MD1|LINE|L1 48644 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 176-62 chr6 155754799 155755269 + 0.5 NA Intergenic Intergenic -191763 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 166.75-72 chr5 92334472 92335004 + 0.5 NA Intergenic L1MB7|LINE|L1 -951421 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 162.75-30 chr15 96482127 96482731 + 0.5 NA Intergenic L1ME1|LINE|L1 148664 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 155.75-101 chr8 81012980 81013542 + 0.5 NA intron (NM_018440, intron 3 of 8) L2|LINE|L2 98807 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 180.25-14 chr12 17328229 17328674 + 0.5 NA Intergenic Intergenic 260627 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 185.75-80 chr7 131837589 131838263 + 0.5 NA Intergenic LTR105_Mam|LTR|ERVL -72294 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 176-28 chr2 15756766 15757214 + 0.5 NA Intergenic L1MB5|LINE|L1 66208 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 200.75-2 chr1 159177677 159178365 + 0.5 NA intron (NM_001127173, intron 1 of 8) MER2|DNA|TcMar-Tigger 6406 NM_001127173 57863 Hs.365689 NM_021189 ENSG00000162706 CADM3 BIgR|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3 cell adhesion molecule 3 protein-coding 203.75-14 chr2 211248840 211249409 + 0.5 NA Intergenic Intergenic 631553 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 148.25-8 chr10 75426335 75426832 + 0.5 NA Intergenic Intergenic -5041 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 173.5-84 chr7 85040473 85041031 + 0.5 NA intron (NM_152754, intron 8 of 16) intron (NM_152754, intron 8 of 16) 81179 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 195-11 chr11 105011637 105012387 + 0.5 NA intron (NM_001136112, intron 1 of 9) L1MA8|LINE|L1 11156 NR_024239 838 Hs.213327 NM_004347 ENSG00000137757 CASP5 ICE(rel)III|ICEREL-III|ICH-3 caspase 5 protein-coding 159-21 chr14 47640713 47641159 + 0.5 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 34018 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 172.25-39 chr20 47556902 47557295 + 0.5 NA intron (NM_181659, intron 1 of 22) L1M5|LINE|L1 55211 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 164.5-60 chr4 104695732 104696356 + 0.5 NA non-coding (NR_125926, exon 10 of 10) non-coding (NR_125926, exon 10 of 10) -201150 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 190-70 chr8 87978840 87979590 + 0.5 NA Intergenic Intergenic -105200 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 185.25-41 chr2 43959974 43960487 + 0.5 NA intron (NM_133259, intron 13 of 37) MIRc|SINE|MIR 35759 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 150.75-58 chr3 95334881 95335409 + 0.5 NA Intergenic Intergenic 348048 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 159.5-7 chr1 221342528 221342916 + 0.5 NA Intergenic Intergenic -6426 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 164.25-68 chr4 57878820 57879284 + 0.5 NA Intergenic Intergenic 453180 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 152.75-44 chr2 19953207 19953679 + 0.5 NA intron (NM_001006657, intron 13 of 27) intron (NM_001006657, intron 13 of 27) 36662 NM_020779 57539 Hs.205427 NM_020779 ENSG00000118965 WDR35 CED2|IFT121|IFTA1|SRTD7 WD repeat domain 35 protein-coding 159.75-87 chr6 54905305 54905933 + 0.5 NA intron (NM_001010872, intron 2 of 4) L1MA7|LINE|L1 58848 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 148.25-72 chr5 120680478 120680791 + 0.5 NA intron (NM_001308088, intron 3 of 3) L1ME3C|LINE|L1 149170 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 160.5-14 chr1 238246938 238247318 + 0.5 NA Intergenic L1M2|LINE|L1 238889 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 201.75-40 chr8 89118323 89119120 + 0.5 NA Intergenic Intergenic 638990 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 221-25 chr5 44248937 44249805 + 0.5 NA Intergenic AluSx|SINE|Alu -139361 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 175.75-65 chr8 78655263 78655843 + 0.5 NA Intergenic Intergenic -10536 NM_001362969 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 229.75-16 chr2 190485167 190485878 + 0.5 NA intron (NM_017694, intron 4 of 7) intron (NM_017694, intron 4 of 7) 49200 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 167.75-45 chr19 44174570 44175197 + 0.5 NA intron (NM_001319089, intron 6 of 6) intron (NM_001319089, intron 6 of 6) 9719 NM_001032372 7769 Hs.145956 NM_015919 ENSG00000167380 ZNF226 - zinc finger protein 226 protein-coding 152-102 chrX 55872415 55872987 + 0.5 NA Intergenic L1M3de|LINE|L1 -35422 NM_001324105 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 156.75-103 chr8 138433927 138434465 + 0.5 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 63065 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 196-13 chr13 66942127 66942776 + 0.5 NA intron (NM_001318372, intron 2 of 4) L1MEc|LINE|L1 -34938 NR_046636 100874086 Hs.577908 NR_046636 ENSG00000225263 PCDH9-AS3 - PCDH9 antisense RNA 3 ncRNA 151.5-36 chr16 21003013 21003496 + 0.5 NA intron (NM_001347886, intron 41 of 61) intron (NM_001347886, intron 41 of 61) 101992 NM_001369644 57149 Hs.745012 NM_020424 ENSG00000102897 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 232.25-8 chr10 41901521 41902166 + 0.5 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 466202 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 167.5-8 chr1 173525386 173525771 + 0.5 NA intron (NM_178527, intron 19 of 27) MIRb|SINE|MIR 48243 NM_004905 9588 Hs.120 NM_004905 ENSG00000117592 PRDX6 1-Cys|AOP2|HEL-S-128m|NSGPx|PRX|aiPLA2|p29 peroxiredoxin 6 protein-coding 163.25-45 chr20 59238958 59239424 + 0.5 NA intron (NM_178457, intron 3 of 4) intron (NM_178457, intron 3 of 4) 48171 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 151.75-9 chr1 238472530 238472993 + 0.5 NA Intergenic Intergenic 13256 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 151.5-98 chr8 64598906 64599417 + 0.5 NA intron (NM_004820, intron 5 of 5) intron (NM_004820, intron 5 of 5) -17269 NR_152770 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 155-53 chr3 16890388 16890892 + 0.5 NA intron (NM_001144382, intron 1 of 5).2 intron (NM_001144382, intron 1 of 5).2 5685 NM_001144382 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 217.25-17 chr16 62166129 62166835 + 0.5 NA Intergenic L1PA17|LINE|L1 -130044 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 156.75-85 chr6 44951560 44951956 + 0.5 NA intron (NR_146635, intron 9 of 12) intron (NR_146635, intron 9 of 12) 246012 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 185.5-40 chr2 188512885 188513424 + 0.5 NA intron (NM_001252669, intron 4 of 8) intron (NM_001252669, intron 4 of 8) 215662 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 182.75-74 chr8 103479212 103479714 + 0.5 NA Intergenic Intergenic 19768 NR_145705 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 225.75-6 chr11 104789688 104790262 + 0.5 NA Intergenic L1MA4A|LINE|L1 108695 NR_034063 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 163.5-106 chr7 17898503 17899155 + 0.5 NA intron (NM_001350862, intron 1 of 25) intron (NM_001350862, intron 1 of 25) 41665 NM_001350864 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 158.5-98 chr8 92410435 92410921 + 0.5 NA Intergenic Intergenic 244816 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 178-35 chr2 132686198 132686806 + 0.5 NA intron (NM_207481, intron 17 of 17) L2b|LINE|L2 -14976 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 150.75-83 chr6 124176884 124177296 + 0.5 NA intron (NM_001300737, intron 2 of 7) Charlie18a|DNA|hAT-Charlie -105915 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 177.25-78 chr9 27919726 27920245 + 0.5 NA Intergenic L1MEc|LINE|L1 -346119 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 188.5-14 chr11 83830849 83831415 + 0.5 NA intron (NM_001142699, intron 17 of 27) L2c|LINE|L2 -148707 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 176.75-53 chr3 66052380 66052804 + 0.5 NA Intergenic Intergenic -13674 NM_015520 9223 Hs.476636 NM_004742 ENSG00000151276 MAGI1 AIP-3|AIP3|BAIAP1|BAP-1|BAP1|MAGI-1|MAGI-1b|Magi1d|TNRC19|WWP3 membrane associated guanylate kinase, WW and PDZ domain containing 1 protein-coding 156.25-6 chr10 86894861 86895218 + 0.5 NA intron (NM_004329, intron 5 of 12) intron (NM_004329, intron 5 of 12) -60720 NM_001330120 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 203.25-4 chr1 191304813 191305502 + 0.5 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -76659 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 197.75-19 chr14 52786525 52786938 + 0.5 NA intron (NM_198066, intron 1 of 5) intron (NM_198066, intron 1 of 5) 4876 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 167.25-70 chr6 120370070 120370585 + 0.5 NA Intergenic L1MB1|LINE|L1 355148 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 195.75-68 chr8 109393455 109393885 + 0.5 NA intron (NM_177531, intron 9 of 77) MIRb|SINE|MIR 31209 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 214.5-19 chr18 40391518 40392062 + 0.5 NA Intergenic Intergenic 325504 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 207.25-17 chr12 123815870 123816622 + 0.5 NA intron (NM_207437, intron 20 of 77) MER21C|LTR|ERVL 53751 NM_207437 196385 Hs.622654 NM_207437 ENSG00000197653 DNAH10 - dynein axonemal heavy chain 10 protein-coding 157.25-92 chr7 112746470 112746916 + 0.5 NA Intergenic Intergenic 43700 NM_022484 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 186.75-32 chr15 55513326 55513846 + 0.5 NA Intergenic HERVE_a-int|LTR|ERV1 -5352 NM_130810 161582 Hs.126403 NM_130810 ENSG00000256061 DNAAF4 CILD25|DYX1|DYX1C1|DYXC1|EKN1|RD dynein axonemal assembly factor 4 protein-coding 200.5-33 chr2 145802301 145802946 + 0.5 NA Intergenic Intergenic -784434 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 190-34 chr3 878071 878642 + 0.5 NA Intergenic AluSc8|SINE|Alu -214668 NM_001349359 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 150.5-57 chr2 35574499 35574991 + 0.5 NA Intergenic L1MA5|LINE|L1 103340 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 193.25-68 chr9 120233338 120234107 + 0.5 NA Intergenic (CACATA)n|Simple_repeat|Simple_repeat 11328 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 163.25-82 chr8 83790370 83790875 + 0.5 NA Intergenic Intergenic 386864 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 229.75-15 chr2 182449310 182450175 + 0.5 NA intron (NM_005019, intron 1 of 14) MIR|SINE|MIR -22694 NM_001363871 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 153.5-77 chr5 14777340 14777814 + 0.5 NA intron (NM_054027, intron 1 of 11) intron (NM_054027, intron 1 of 11) 48435 NR_039780 100616271 NR_039780 ENSG00000264792 MIR4637 - microRNA 4637 ncRNA 179.75-10 chr11 85094184 85094633 + 0.5 NA intron (NM_001351274, intron 5 of 26) Tigger1|DNA|TcMar-Tigger -170987 NM_001300983 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 180-28 chr17 55270445 55270997 + 0.5 NA intron (NM_001330375, intron 2 of 3) AluY|SINE|Alu 4499 NM_001330375 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 161-38 chr17 68584665 68585096 + 0.5 NA intron (NM_017565, intron 1 of 10) L4_A_Mam|LINE|RTE-X 16487 NM_001243746 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 151-67 chr4 39163415 39163886 + 0.5 NA Intergenic Intergenic -18879 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 149-78 chr4 129116663 129117063 + 0.5 NA TTS (NM_173487) TTS (NM_173487) 20711 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 158.5-4 chr1 190303489 190303948 + 0.5 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 172292 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 149-79 chr4 176209713 176210086 + 0.5 NA Intergenic Intergenic -14314 NM_144644 132851 Hs.481235 NM_144644 ENSG00000150628 SPATA4 SPEF1B|TSARG2 spermatogenesis associated 4 protein-coding 159-29 chr18 59389156 59389742 + 0.5 NA Intergenic Intergenic -30184 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 172-26 chr15 95409324 95409871 + 0.5 NA Intergenic Intergenic -23496 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 158.25-30 chr12 21546930 21547456 + 0.5 NA intron (NM_021957, intron 11 of 15) MER63C|DNA|hAT-Blackjack 19268 NR_135188 80763 Hs.130692 NM_030572 ENSG00000134548 SPX C12orf39 spexin hormone protein-coding 165.75-98 chr8 46102757 46103345 + 0.5 NA Intergenic GSAT|Satellite|centr 514592 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 169.75-68 chr7 39027885 39028362 + 0.5 NA intron (NM_007252, intron 2 of 10) L1M5|LINE|L1 -14556 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 163.5-49 chr17 81017096 81017746 + 0.5 NA Intergenic AluJo|SINE|Alu 17298 NR_026857 440465 Hs.448889 NM_001004336 ENSG00000226137 BAIAP2-DT BAIAP2-AS1|lnc-BAIAP2 BAIAP2 divergent transcript ncRNA 175.5-61 chr3 104675006 104675525 + 0.5 NA Intergenic Intergenic -691448 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 173.75-68 chr8 92009487 92009936 + 0.5 NA intron (NM_004349, intron 4 of 10) intron (NM_004349, intron 4 of 10) 7969 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 175-36 chr4 184238096 184238751 + 0.5 NA Intergenic MIR|SINE|MIR -20550 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 154-87 chr5 92936863 92937323 + 0.5 NA Intergenic Intergenic 634250 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 192-48 chr5 38055869 38056392 + 0.5 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 30433 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 159.25-11 chr11 125001591 125002163 + 0.5 NA intron (NM_025004, intron 11 of 15) L1MB8|LINE|L1 47675 NM_025004 80071 Hs.287555 NM_025004 ENSG00000149548 CCDC15 - coiled-coil domain containing 15 protein-coding 185-11 chr11 55056618 55057196 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -205248 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 154.5-93 chr8 81522031 81522475 + 0.5 NA Intergenic CpG 9137 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 173-90 chr8 136093847 136094357 + 0.5 NA Intergenic Intergenic -436696 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 153.25-29 chr11 131887122 131887546 + 0.5 NA intron (NM_001352006, intron 2 of 9) intron (NM_001352006, intron 2 of 9) -22590 NR_147849 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 154-26 chr13 45811411 45811893 + 0.5 NA intron (NM_198849, intron 1 of 1) intron (NM_198849, intron 1 of 1) 40101 NM_198849 283514 Hs.368483 NM_198849 ENSG00000215475 SIAH3 - siah E3 ubiquitin protein ligase family member 3 protein-coding 170.5-67 chr7 38821174 38821612 + 0.5 NA intron (NM_080631, intron 4 of 27) intron (NM_080631, intron 4 of 27) 87798 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 180.75-8 chr11 13140160 13140759 + 0.5 NA Intergenic Intergenic 131143 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 148.75-49 chr2 115645530 115645969 + 0.5 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 301934 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 151.75-68 chr4 65988845 65989245 + 0.5 NA Intergenic Intergenic -287779 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 156.25-80 chr6 42786434 42786907 + 0.5 NA intron (NR_134654, intron 1 of 1) L2c|LINE|L2 3174 NR_134654 401261 Hs.656652 NM_001004322 LOC401261 - uncharacterized LOC401261 ncRNA 148.25-50 chr2 184977171 184977694 + 0.5 NA Intergenic Intergenic 189640 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 154.25-35 chr17 21090930 21091529 + 0.5 NA TTS (NR_110895) TTS (NR_110895) 15673 NR_110896 101060544 Hs.585812 NR_110895 ENSG00000236819 LINC01563 HP08942 long intergenic non-protein coding RNA 1563 ncRNA 161-49 chr2 110836655 110837235 + 0.5 NA intron (NM_001371254, intron 9 of 18) MER102b|DNA|hAT-Charlie 104372 NM_001365487 55289 Hs.253320 NM_018308 ENSG00000153093 ACOXL - acyl-CoA oxidase like protein-coding 188.75-15 chr12 58376825 58377291 + 0.5 NA Intergenic L2b|LINE|L2 -214644 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 153.5-98 chr7 78877397 78877902 + 0.5 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -131339 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 185-69 chr8 76762716 76763276 + 0.5 NA intron (NM_024721, intron 3 of 10) intron (NM_024721, intron 3 of 10) -79721 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 279.75-11 chr3 38821327 38822089 + 0.5 NA Intergenic L2b|LINE|L2 -27698 NM_006514 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 222.25-27 chr3 167060510 167061257 + 0.5 NA Intergenic MLT1L|LTR|ERVL-MaLR 162200 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 174.75-57 chr7 47616996 47617393 + 0.5 NA Intergenic MER57B1|LTR|ERV1 -4745 NR_108090 101929086 Hs.563487 NR_108090 ENSG00000236078 LINC01447 - long intergenic non-protein coding RNA 1447 ncRNA 199.5-51 chr8 123212058 123212743 + 0.5 NA Intergenic MLT2B4|LTR|ERVL 3463 NR_039808 100616260 NR_039808 ENSG00000266324 MIR4663 - microRNA 4663 ncRNA 147-71 chr3 164631705 164632154 + 0.5 NA Intergenic MER31-int|LTR|ERV1 199551 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 155.5-107 chr8 115842904 115843349 + 0.5 NA Intergenic Intergenic -174151 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 173.5-5 chr1 114539084 114539578 + 0.5 NA Intergenic HAL1|LINE|L1 -28128 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 178.25-54 chr5 73543601 73544031 + 0.5 NA Intergenic L1ME4b|LINE|L1 21823 NM_023039 57763 Hs.239154 NM_023039 ENSG00000164331 ANKRA2 ANKRA ankyrin repeat family A member 2 protein-coding 206.25-15 chr15 58599644 58600320 + 0.5 NA intron (NM_001320570, intron 13 of 14) L1ME4a|LINE|L1 93625 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 171.5-82 chr5 109997839 109998255 + 0.5 NA Intergenic L2c|LINE|L2 114865 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 179.5-57 chr4 85520148 85520602 + 0.5 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 45225 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 172-92 chr9 108572668 108573123 + 0.5 NA Intergenic L1ME4b|LINE|L1 283091 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 148.75-35 chr15 98017468 98017891 + 0.5 NA intron (NR_146563, intron 2 of 2) L2a|LINE|L2 14641 NR_146565 105371008 NR_146563 LINC02251 - long intergenic non-protein coding RNA 2251 ncRNA 174.5-87 chr8 112947717 112948340 + 0.5 NA intron (NM_001363185, intron 6 of 66) intron (NM_001363185, intron 6 of 66) 304535 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 154.5-104 chrX 81348057 81348617 + 0.5 NA Intergenic MER89|LTR|ERV1 146235 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 205.25-9 chr12 84752192 84752826 + 0.5 NA Intergenic Intergenic 160290 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 177.75-49 chr3 124975251 124975960 + 0.5 NA intron (NM_020733, intron 15 of 16) L1MB8|LINE|L1 -40854 NM_033049 56667 Hs.5940 NM_033049 ENSG00000173702 MUC13 DRCC1|MUC-13 mucin 13, cell surface associated protein-coding 218.5-41 chr8 85935861 85936452 + 0.5 NA Intergenic Intergenic -108214 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 157.25-74 chr4 111992841 111993237 + 0.5 NA Intergenic Intergenic -152415 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 185.25-64 chr5 14786269 14786725 + 0.5 NA intron (NM_054027, intron 1 of 11) intron (NM_054027, intron 1 of 11) 39515 NR_039780 100616271 NR_039780 ENSG00000264792 MIR4637 - microRNA 4637 ncRNA 255-15 chr7 27667542 27668434 + 0.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -5105 NM_152740 11112 Hs.406758 NM_152740 ENSG00000106049 HIBADH NS5ATP1 3-hydroxyisobutyrate dehydrogenase protein-coding 148.25-73 chr5 159723328 159723828 + 0.5 NA Intergenic Intergenic 147806 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 166.5-74 chr6 64767334 64767870 + 0.5 NA intron (NM_001292009, intron 22 of 43) L1MA5A|LINE|L1 -533816 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 158.25-85 chr5 45257286 45257881 + 0.5 NA 3' UTR (NM_021072, exon 8 of 8) 3' UTR (NM_021072, exon 8 of 8) 438797 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 177-57 chr6 56130544 56131107 + 0.5 NA intron (NM_030820, intron 12 of 29) intron (NM_030820, intron 12 of 29) -39163 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 146-65 chr5 27142749 27143098 + 0.5 NA Intergenic Intergenic -104337 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 165.75-34 chr15 47540635 47541074 + 0.5 NA intron (NM_001198999, intron 3 of 19) L2c|LINE|L2 -176651 NM_001358352 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 150.25-64 chr3 103064169 103064572 + 0.5 NA Intergenic L1MCc|LINE|L1 459746 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 251-10 chr5 16721903 16722857 + 0.5 NA intron (NM_012334, intron 19 of 40) intron (NM_012334, intron 19 of 40) -105322 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 177.25-64 chr6 44802516 44802922 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -250838 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 284.5-6 chr2 80602575 80603290 + 0.5 NA intron (NM_001282599, intron 9 of 11) intron (NM_001282599, intron 9 of 11) 289553 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 146.75-27 chr14 29561314 29561673 + 0.5 NA Intergenic L1MD2|LINE|L1 365603 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 234.25-3 chr13 71052209 71052979 + 0.5 NA intron (NR_047699, intron 1 of 3) L1M2|LINE|L1 37453 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 160.5-45 chr18 70984159 70984708 + 0.5 NA Intergenic Intergenic -333479 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 172.75-5 chr1 187694565 187695157 + 0.5 NA Intergenic Intergenic 251233 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 161.75-58 chr4 44210107 44210504 + 0.5 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 193243 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 272-8 chr22 45719468 45720440 + 0.5 NA intron (NM_013236, intron 6 of 11) L2c|LINE|L2 -40570 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 210-52 chr7 38798260 38798859 + 0.5 NA intron (NM_014396, intron 7 of 28) AluSx|SINE|Alu 110632 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 152.25-96 chr8 91489901 91490455 + 0.5 NA Intergenic Intergenic 240859 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 185.75-30 chr17 52752346 52752952 + 0.5 NA Intergenic AluSq2|SINE|Alu -109472 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 196.75-38 chr4 83295398 83295936 + 0.5 NA intron (NM_001098540, intron 11 of 11) intron (NM_001098540, intron 11 of 11) -10533 NM_015697 27235 Hs.144304 NM_015697 ENSG00000173085 COQ2 CL640|COQ10D1|MSA1|PHB:PPT coenzyme Q2, polyprenyltransferase protein-coding 211.75-4 chr1 104413978 104414613 + 0.5 NA Intergenic Intergenic 341272 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 147.5-47 chr2 160569373 160569798 + 0.5 NA Intergenic L2c|LINE|L2 -75778 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 214.25-9 chr12 110428094 110428929 + 0.5 NA Intergenic L1ME4a|LINE|L1 21826 NM_001278556 10094 Hs.524741 NM_001278556 ENSG00000111229 ARPC3 ARC21|p21-Arc actin related protein 2/3 complex subunit 3 protein-coding 148.25-60 chr3 86878131 86878535 + 0.5 NA Intergenic Intergenic 112816 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 210.75-42 chr8 22602910 22603589 + 0.5 NA exon (NM_001013842, exon 7 of 7) exon (NM_001013842, exon 7 of 7) -1508 NM_001363069 57805 Hs.744848 NM_021174 ENSG00000158941 CCAR2 DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC cell cycle and apoptosis regulator 2 protein-coding 184.25-45 chr3 86747658 86748085 + 0.5 NA Intergenic THE1C-int|LTR|ERVL-MaLR 243278 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 156.5-48 chr2 37983958 37984427 + 0.5 NA intron (NM_001170793, intron 4 of 9) intron (NM_001170793, intron 4 of 9) 33728 NM_144713 151393 Hs.591566 NM_144713 ENSG00000115841 RMDN2 BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4 regulator of microtubule dynamics 2 protein-coding 167-79 chr7 42765316 42765853 + 0.5 NA Intergenic Intergenic -59137 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 213.5 chr1 5215322 5215873 + 0.5 NA Intergenic L1ME2z|LINE|L1 560988 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 160.75-46 chr17 68377448 68377859 + 0.5 NA intron (NM_001352899, intron 8 of 12) intron (NM_001352899, intron 8 of 12) -35970 NM_001278433 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 200-43 chr8 79102487 79103253 + 0.5 NA Intergenic L1PA13|LINE|L1 -229318 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 185.25-36 chr18 68755740 68756309 + 0.5 NA intron (NM_001093729, intron 3 of 9) intron (NM_001093729, intron 3 of 9) 40808 NM_001093729 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 187-8 chr11 108252863 108253388 + 0.5 NA intron (NM_001351834, intron 13 of 63) intron (NM_001351834, intron 13 of 63) 29596 NM_001351836 472 Hs.367437 NM_000051 ENSG00000149311 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 149.25-122 chrX 45081141 45081638 + 0.5 NA intron (NR_111960, intron 19 of 27) intron (NR_111960, intron 19 of 27) 119487 NM_024689 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 199.5-44 chr5 169934970 169935534 + 0.5 NA intron (NM_001346304, intron 1 of 3) intron (NM_001346304, intron 1 of 3) 45243 NM_001129891 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 185.5-27 chr14 66359397 66359946 + 0.5 NA Intergenic (T)n|Simple_repeat|Simple_repeat -126700 NR_110307 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 217.75-14 chr15 35463907 35464496 + 0.5 NA intron (NM_080650, intron 3 of 8) AluSc5|SINE|Alu 81964 NM_080650 89978 Hs.107196 NM_080650 ENSG00000134146 DPH6 ATPBD4 diphthamine biosynthesis 6 protein-coding 151.75-8 chr1 216407293 216407769 + 0.5 NA intron (NM_206933, intron 3 of 71) intron (NM_206933, intron 3 of 71) 15865 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 251-12 chr8 58701820 58702555 + 0.5 NA Intergenic Intergenic -42334 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 165.5-11 chr1 197166993 197167390 + 0.5 NA intron (NM_194314, intron 9 of 9) L1ME3|LINE|L1 -20497 NM_001206846 259266 Hs.121028 NM_018136 ENSG00000066279 ASPM ASP|Calmbp1|MCPH5 abnormal spindle microtubule assembly protein-coding 180.25-15 chr13 41716010 41716597 + 0.5 NA intron (NM_015058, intron 26 of 44) intron (NM_015058, intron 26 of 44) -147908 NR_049803 100847026 NR_049803 ENSG00000284584 MIR5006 - microRNA 5006 ncRNA 174.25-71 chr8 107787163 107787655 + 0.5 NA Intergenic Intergenic -289491 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 223.5-21 chr18 1688800 1689281 + 0.5 NA Intergenic MER57-int|LTR|ERV1 -329411 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 184.25-40 chr22 18032588 18033161 + 0.5 NA intron (NR_024417, intron 1 of 1) MIRc|SINE|MIR 3489 NR_024417 100192420 Hs.589947 NR_024417 ENSG00000235295 LINC01634 - long intergenic non-protein coding RNA 1634 ncRNA 224.75-42 chr7 110821866 110822519 + 0.5 NA intron (NM_001350963, intron 5 of 5) L2b|LINE|L2 -268814 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 171.5-88 chr6 138066707 138067195 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 40468 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 166.75-3 chr1 87005091 87005727 + 0.5 NA intron (NM_012262, intron 1 of 6) intron (NM_012262, intron 1 of 6) 90774 NM_012262 9653 Hs.743280 NM_012262 ENSG00000153936 HS2ST1 dJ604K5.2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 168.25-34 chr2 59483380 59483956 + 0.5 NA Intergenic L1MA7|LINE|L1 265960 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 230.75-23 chr20 14354318 14354917 + 0.5 NA intron (NM_001351663, intron 3 of 17) L1PA16|LINE|L1 -16950 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 165.75-104 chr8 86254356 86254778 + 0.5 NA Intergenic LTR54|LTR|ERV1 -24186 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 218.5-36 chr6 118851303 118852054 + 0.5 NA intron (NM_017696, intron 7 of 11) intron (NM_017696, intron 7 of 11) -42474 NM_014034 25842 Hs.292316 NM_014034 ENSG00000111875 ASF1A CGI-98|CIA|HSPC146 anti-silencing function 1A histone chaperone protein-coding 151.5-15 chr11 3959275 3959750 + 0.5 NA intron (NM_001277962, intron 1 of 12) intron (NM_001277962, intron 1 of 12) 103450 NR_039835 100616453 NR_039835 ENSG00000284525 MIR4687 - microRNA 4687 ncRNA 165.25-2 chr1 92502051 92502566 + 0.5 NA Intergenic L1MB7|LINE|L1 -15383 NM_005263 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 192.25-54 chr5 109016835 109017598 + 0.5 NA intron (NR_146155, intron 13 of 19) intron (NR_146155, intron 13 of 19) 92610 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 150.5-103 chr6 51002711 51003180 + 0.5 NA Intergenic MER103C|DNA|hAT-Charlie 184074 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 197-36 chr5 58270328 58270934 + 0.5 NA Intergenic Intergenic -148290 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 179-27 chr2 83035960 83036458 + 0.5 NA Intergenic Intergenic 179406 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 163.5-113 chr8 61935724 61936137 + 0.5 NA Intergenic Intergenic 46091 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 165-46 chr2 198748312 198748798 + 0.5 NA Intergenic Intergenic -373458 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 206-14 chr19 34972444 34972979 + 0.5 NA Intergenic MLT1G1|LTR|ERVL-MaLR -8482 NM_175872 126375 Hs.50405 NM_175872 ENSG00000180884 ZNF792 - zinc finger protein 792 protein-coding 172-68 chr5 59858685 59859087 + 0.5 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 34840 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 169-7 chr10 24593408 24593828 + 0.5 NA intron (NM_001367447, intron 20 of 24) intron (NM_001367447, intron 20 of 24) 29225 NR_160025 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 174-61 chr6 150840336 150840853 + 0.5 NA exon (NM_001329799, exon 16 of 16) exon (NM_001329799, exon 16 of 16) -25085 NM_015440 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 157.5-115 chr9 79840350 79840965 + 0.5 NA intron (NR_121213, intron 1 of 2) L1PA15|LINE|L1 16127 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 224.5-7 chr11 61417068 61417867 + 0.5 NA intron (NM_001142565, intron 5 of 9) intron (NM_001142565, intron 5 of 9) 12444 NM_024811 79869 Hs.718984 NM_024811 ENSG00000149532 CPSF7 CFIm59 cleavage and polyadenylation specific factor 7 protein-coding 191.25-13 chr10 71130649 71131268 + 0.5 NA Intergenic Plat_L3|LINE|CR1 -81612 NM_170744 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 176.5-86 chr8 78479857 78480511 + 0.5 NA Intergenic L1MA3|LINE|L1 -36156 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 149-39 chr2 40910698 40911148 + 0.5 NA Intergenic L1MA5A|LINE|L1 -398488 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 169.5-29 chr12 130494860 130495367 + 0.5 NA intron (NM_001351226, intron 4 of 21) MLT1C|LTR|ERVL-MaLR 133343 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 163.25-74 chr7 105507952 105508357 + 0.5 NA exon (NM_019042, exon 2 of 16) exon (NM_019042, exon 2 of 16) 366 NM_001318163 54517 Hs.520619 NM_019042 ENSG00000091127 PUS7 IDDABS pseudouridine synthase 7 protein-coding 203.25-13 chr15 92260711 92261399 + 0.5 NA Intergenic L1ME3F|LINE|L1 -132826 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 146.5-74 chr4 61141485 61142019 + 0.5 NA Intergenic UCON29|DNA|PiggyBac? -1904 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 219.75-24 chr2 239543893 239544657 + 0.5 NA Intergenic Intergenic 142527 NR_135577 101928111 Hs.534680 NR_135575 ENSG00000222020 HDAC4-AS1 - HDAC4 antisense RNA 1 ncRNA 187.75-68 chr7 30842081 30842673 + 0.5 NA intron (NR_037598, intron 11 of 19) intron (NR_037598, intron 11 of 19) -69317 NM_198098 358 Hs.76152 NM_000385 ENSG00000240583 AQP1 AQP-CHIP|CHIP28|CO aquaporin 1 (Colton blood group) protein-coding 212-28 chr5 26023598 26024142 + 0.5 NA Intergenic MIR|SINE|MIR 832917 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 171.25-43 chr4 42093940 42094339 + 0.5 NA Intergenic L1ME4b|LINE|L1 58516 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 166.75-34 chr17 69979597 69980074 + 0.5 NA intron (NR_110875, intron 2 of 4) intron (NR_110875, intron 2 of 4) 18128 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 177.25-5 chr1 169998654 169999328 + 0.5 NA intron (NM_014970, intron 10 of 19) intron (NM_014970, intron 10 of 19) 69924 NM_001204517 22920 Hs.433442 NM_014970 ENSG00000075945 KIFAP3 FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1 kinesin associated protein 3 protein-coding 170-68 chr8 118102495 118103059 + 0.5 NA intron (NM_000127, intron 1 of 10) L1ME4a|LINE|L1 9042 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 164-38 chr2 202163264 202163706 + 0.5 NA intron (NM_001277372, intron 14 of 23) intron (NM_001277372, intron 14 of 23) -46427 NR_135244 729224 Hs.623895 NR_135243 KIAA2012-AS1 - KIAA2012 antisense RNA 1 ncRNA 166-60 chr6 48732984 48733575 + 0.5 NA Intergenic Intergenic -664590 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 174.5-66 chr5 104088163 104088600 + 0.5 NA Intergenic Intergenic -525592 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 150-4 chr1 102768335 102768820 + 0.5 NA Intergenic AluJr|SINE|Alu 339919 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 179.5-47 chr20 56763946 56764510 + 0.5 NA Intergenic AluJr|SINE|Alu 134922 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 153.75-77 chr6 77299250 77299726 + 0.5 NA Intergenic AluY|SINE|Alu 164534 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 153.25-25 chr11 37581823 37582265 + 0.5 NA Intergenic HERVH-int|LTR|ERV1 -356557 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 147-15 chr11 21136477 21136999 + 0.5 NA intron (NM_201551, intron 13 of 18) intron (NM_201551, intron 13 of 18) 467152 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 190-20 chr18 74860203 74860720 + 0.5 NA intron (NM_017757, intron 3 of 7) intron (NM_017757, intron 3 of 7) 229498 NM_017757 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 206.75-11 chr10 104760576 104761390 + 0.5 NA intron (NM_014978, intron 1 of 26) Tigger15a|DNA|TcMar-Tigger -94767 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 223.75-7 chr14 49327807 49328491 + 0.5 NA Intergenic Intergenic 258231 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 152.5-32 chr15 69927640 69928166 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR 92669 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 148.75-25 chr14 33503109 33503521 + 0.5 NA intron (NM_001165893, intron 3 of 10) intron (NM_001165893, intron 3 of 10) -205622 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 163.75-5 chr1 186876362 186876817 + 0.5 NA intron (NM_024420, intron 3 of 17) intron (NM_024420, intron 3 of 17) 47640 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 178.25-16 chr14 54785738 54786400 + 0.5 NA intron (NM_015589, intron 11 of 11) L1MB7|LINE|L1 31236 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 198.5-25 chr19 44441411 44442169 + 0.5 NA intron (NM_001278510, intron 4 of 5) intron (NM_001278510, intron 4 of 5) 6682 NR_103551 7772 Hs.709348 NM_014518 ENSG00000278318 ZNF229 - zinc finger protein 229 protein-coding 205.5-47 chr8 98718291 98718783 + 0.5 NA intron (NM_006281, intron 4 of 10) MER33|DNA|hAT-Charlie 107134 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 164.25-4 chr1 89553968 89554494 + 0.5 NA intron (NM_001134476, intron 3 of 7) intron (NM_001134476, intron 3 of 7) 29393 NM_001369817 23507 Hs.482017 NM_015350 ENSG00000197147 LRRC8B TA-LRRP|TALRRP leucine rich repeat containing 8 VRAC subunit B protein-coding 207.5-46 chr9 91451833 91452559 + 0.5 NA Intergenic MER4B|LTR|ERV1 -27570 NM_001289999 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 195.75-7 chr10 53118288 53118869 + 0.5 NA Intergenic LTR8B|LTR|ERV1 -346878 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 198.25-44 chr5 100909067 100909677 + 0.5 NA Intergenic MLT2D|LTR|ERVL -6090 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 203-44 chr8 126717165 126717662 + 0.5 NA Intergenic LTR82B|LTR|ERVL -158935 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 205.75-49 chr6 44775223 44775951 + 0.5 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -223706 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 212.25-38 chr5 166868092 166868802 + 0.5 NA Intergenic Intergenic 57923 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 163-20 chr11 88574928 88575412 + 0.5 NA intron (NM_001143831, intron 6 of 8) intron (NM_001143831, intron 6 of 8) 70594 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 169.75-78 chrX 155206749 155207247 + 0.5 NA intron (NM_001303544, intron 1 of 6) intron (NM_001303544, intron 1 of 6) -9275 NM_001303543 7411 Hs.436803 NM_003372 ENSG00000155959 VBP1 HIBBJ46|PFD3|PFDN3|VBP-1 VHL binding protein 1 protein-coding 162.5-4 chr1 78839910 78840508 + 0.5 NA Intergenic Intergenic 166521 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 221-28 chr5 142535626 142536162 + 0.5 NA Intergenic Tigger3a|DNA|TcMar-Tigger 85440 NM_001257212 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 189-66 chr9 79531212 79531766 + 0.5 NA Intergenic MER104|DNA|TcMar-Tc2 -40284 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 158.75-21 chr13 84187292 84187732 + 0.5 NA intron (NR_046871, intron 1 of 6) intron (NR_046871, intron 1 of 6) 46910 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 196.75-16 chr14 66555670 66556217 + 0.5 NA intron (NM_001024218, intron 1 of 21) Tigger3a|DNA|TcMar-Tigger 48536 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 219.25-8 chr11 78786056 78786564 + 0.5 NA intron (NM_001098816, intron 16 of 33) intron (NM_001098816, intron 16 of 33) -211446 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 220.75-40 chr7 117262718 117263386 + 0.5 NA Intergenic Intergenic 60006 NR_024047 7472 Hs.567356 NM_003391 ENSG00000105989 WNT2 INT1L1|IRP Wnt family member 2 protein-coding 154.25-71 chr6 69731442 69731826 + 0.5 NA intron (NM_001367272, intron 7 of 15) MER47A|DNA|TcMar-Tigger 64832 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 159.5-65 chr4 72641940 72642415 + 0.5 NA Intergenic Intergenic -72956 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 226.25-26 chr7 86860135 86860714 + 0.5 NA intron (NM_001363522, intron 4 of 4) intron (NM_001363522, intron 4 of 4) 105475 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 292.5-4 chr15 24017156 24017871 + 0.5 NA intron (NR_126392, intron 4 of 5) intron (NR_126392, intron 4 of 5) 42366 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 168.25-50 chr4 12966012 12966607 + 0.5 NA Intergenic Intergenic 518031 NM_001017979 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 220-24 chr4 105444525 105445050 + 0.5 NA intron (NM_176869, intron 5 of 11) intron (NM_176869, intron 5 of 11) 29275 NM_176869 27068 Hs.654957 NM_006903 ENSG00000138777 PPA2 HSPC124|SCFAI|SCFI|SID6-306 pyrophosphatase (inorganic) 2 protein-coding 154.25-18 chr11 73475388 73475891 + 0.5 NA intron (NM_001286051, intron 1 of 5) L1MB8|LINE|L1 98971 NM_032871 84957 Hs.533720 NM_032871 ENSG00000054967 RELT AI3C|TNFRSF19L|TRLT RELT TNF receptor protein-coding 192.75-37 chr22 41016356 41017002 + 0.5 NA Intergenic L1MC4a|LINE|L1 57042 NR_132979 106635682 NR_132979 SNORD140 - small nucleolar RNA, C/D box 140 snoRNA 258-11 chr4 90975462 90976106 + 0.5 NA intron (NM_001145065, intron 9 of 10) intron (NM_001145065, intron 9 of 10) 740753 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 147-44 chr2 48426392 48426881 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -14130 NR_024188 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 148.75-23 chr13 50465353 50465833 + 0.5 NA intron (NR_109974, intron 4 of 6) L1M5|LINE|L1 61856 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 224-2 chr1 78326121 78326858 + 0.5 NA intron (NR_027310, intron 3 of 5) L1M5|LINE|L1 96890 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 186.5-68 chr7 54354342 54354785 + 0.5 NA Intergenic Intergenic 23866 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 173-83 chr8 50141744 50142119 + 0.5 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) -22200 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 148.25-28 chr13 114311752 114312210 + 0.5 NA Intergenic Intergenic -2522 NM_032436 283489 Hs.7542 NM_032436 ENSG00000198824 CHAMP1 C13orf8|CAMP|CHAMP|MRD40|ZNF828 chromosome alignment maintaining phosphoprotein 1 protein-coding 149-83 chr5 96989377 96989932 + 0.5 NA intron (NM_005575, intron 4 of 17) intron (NM_005575, intron 4 of 17) 31221 NM_175920 4012 Hs.527199 NM_005575 ENSG00000113441 LNPEP CAP|IRAP|P-LAP|PLAP leucyl and cystinyl aminopeptidase protein-coding 148.75-39 chr18 48112828 48113240 + 0.5 NA intron (NM_001371291, intron 4 of 6) intron (NM_001371291, intron 4 of 6) 24114 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 158.75-23 chr14 45702091 45702678 + 0.5 NA Intergenic Intergenic 13218 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 161.75-22 chr16 82117113 82117699 + 0.5 NA Intergenic Intergenic 52818 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 254.75 chr1 104648041 104648633 + 0.5 NA Intergenic Intergenic 575314 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 237.5-18 chr2 183338850 183339639 + 0.5 NA Intergenic Intergenic 214801 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 256.5-17 chr7 114188905 114189786 + 0.5 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 103018 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 154.25-23 chr12 11441369 11441847 + 0.5 NA intron (NR_148969, intron 2 of 4) L1MB2|LINE|L1 45070 NR_148969 440084 Hs.121321 NR_148969 LOC440084 - uncharacterized LOC440084 ncRNA 262-12 chr8 122159500 122160163 + 0.5 NA Intergenic Intergenic 408813 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 185.5-43 chr21 28740325 28740757 + 0.5 NA Intergenic Intergenic 144826 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 193.75-29 chr17 59745123 59745663 + 0.5 NA intron (NM_001329401, intron 4 of 9) intron (NM_001329401, intron 4 of 9) 37739 NM_001329397 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 170.25-15 chr14 42906451 42907003 + 0.5 NA Intergenic Intergenic 1299871 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 147.75-83 chr4 180914078 180914446 + 0.5 NA Intergenic L2a|LINE|L2 244887 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 215-32 chr7 47915326 47915846 + 0.5 NA exon (NM_138295, exon 8 of 57) exon (NM_138295, exon 8 of 57) 32905 NM_138295 168507 Hs.195979 NM_138295 ENSG00000158683 PKD1L1 HTX8|PRO19563 polycystin 1 like 1, transient receptor potential channel interacting protein-coding 213.5-5 chr1 197551820 197552325 + 0.5 NA TTS (NM_001300858) TTS (NM_001300858) 223408 NR_125340 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 192-8 chr1 244417648 244418203 + 0.5 NA intron (NM_001365073, intron 9 of 12) intron (NM_001365073, intron 9 of 12) 33984 NM_001126 159 Hs.498313 NM_001126 ENSG00000035687 ADSS ADEH|ADSS 2|ADSS2 adenylosuccinate synthase protein-coding 170.5-27 chr17 39392176 39392825 + 0.5 NA intron (NM_001370209, intron 1 of 13) intron (NM_001370209, intron 1 of 13) 9126 NM_032875 84961 Hs.462946 NM_032875 ENSG00000108306 FBXL20 Fbl2|Fbl20 F-box and leucine rich repeat protein 20 protein-coding 168.5-7 chr1 201150964 201151428 + 0.5 NA intron (NM_016456, intron 3 of 5) L3|LINE|CR1 3278 NM_001288565 252839 Hs.181444 NM_016456 ENSG00000116857 TMEM9 DERM4|TMEM9A transmembrane protein 9 protein-coding 167.5-5 chr1 82352761 82353238 + 0.5 NA Intergenic AluJb|SINE|Alu -550184 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 181.75 chr1 46095949 46096432 + 0.5 NA intron (NM_001303427, intron 1 of 9) intron (NM_001303427, intron 1 of 9) 34483 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 178.25-48 chr4 121813753 121814223 + 0.5 NA exon (NM_001034194, exon 10 of 13) exon (NM_001034194, exon 10 of 13) 9895 NM_001237 890 Hs.58974 NM_001237 ENSG00000145386 CCNA2 CCN1|CCNA cyclin A2 protein-coding 165-57 chr3 103797367 103797853 + 0.5 NA Intergenic L1MD1|LINE|L1 -273494 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 156-98 chr9 5631831 5632390 + 0.5 NA intron (NM_001206557, intron 1 of 24) intron (NM_001206557, intron 1 of 24) 2991 NM_001206557 57589 Hs.211520 NM_020829 ENSG00000107036 RIC1 CIP150|KIAA1432|bA207C16.1 RIC1 homolog, RAB6A GEF complex partner 1 protein-coding 160.75-34 chr14 41860216 41860613 + 0.5 NA intron (NM_001330106, intron 2 of 4) intron (NM_001330106, intron 2 of 4) 253558 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 228.5-27 chr19 43548530 43549207 + 0.5 NA intron (NM_006297, intron 10 of 16) MIR|SINE|MIR 15680 NM_174945 284346 Hs.213534 NM_174945 ENSG00000176472 ZNF575 - zinc finger protein 575 protein-coding 159-85 chr8 134175960 134176575 + 0.5 NA Intergenic L1ME3G|LINE|L1 289771 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 194.75-39 chr5 54936218 54936784 + 0.5 NA Intergenic Intergenic 49092 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 154.75-81 chr5 28289412 28289809 + 0.5 NA Intergenic Intergenic -1945 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 176.75-11 chr10 89064999 89065666 + 0.5 NA Intergenic Intergenic -1921 NR_039827 100616192 NR_039827 ENSG00000265375 MIR4679-2 - microRNA 4679-2 ncRNA 155.75-93 chr6 160380818 160381254 + 0.5 NA intron (NM_021977, intron 1 of 10) intron (NM_021977, intron 1 of 10) 32658 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 157.5-20 chr12 64775677 64776276 + 0.5 NA intron (NM_001330187, intron 1 of 13) L1PA10|LINE|L1 -4779 NM_001330188 23329 Hs.192492 NM_015279 ENSG00000111490 TBC1D30 - TBC1 domain family member 30 protein-coding 190.25-34 chr4 141265874 141266392 + 0.5 NA Intergenic AluSx1|SINE|Alu 45238 NM_014487 27309 Hs.120766 NM_014487 ENSG00000109445 ZNF330 HSA6591|NOA36 zinc finger protein 330 protein-coding 154.75-8 chr1 242004961 242005451 + 0.5 NA Intergenic AluJr|SINE|Alu -6108 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 145.75-12 chr10 52595715 52596200 + 0.5 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) -125424 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 166.75-58 chr3 170342110 170342730 + 0.5 NA Intergenic AluSx3|SINE|Alu -15295 NM_001145098 6498 Hs.536655 NM_005414 ENSG00000136603 SKIL SNO|SnoA|SnoI|SnoN SKI like proto-oncogene protein-coding 155.5-58 chr20 22178729 22179096 + 0.5 NA Intergenic L1M4|LINE|L1 103889 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 148.25-15 chr11 18540536 18540888 + 0.5 NA intron (NM_001040697, intron 9 of 11) intron (NM_001040697, intron 9 of 11) -13770 NM_006292 7251 Hs.523512 NM_006292 ENSG00000074319 TSG101 TSG10|VPS23 tumor susceptibility 101 protein-coding 241-14 chr2 80228562 80229369 + 0.5 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 75787 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 151.75-23 chr13 23936111 23936634 + 0.5 NA intron (NR_073430, intron 3 of 4) intron (NR_073430, intron 3 of 4) 12943 NR_073430 400110 Hs.744780 NM_207439 ANKRD20A19P - ankyrin repeat domain 20 family member A19, pseudogene pseudo 178.25-26 chr18 59043041 59043688 + 0.5 NA intron (NR_024021, intron 2 of 4) MLT1I|LTR|ERVL-MaLR 7685 NR_024021 390858 Hs.716280 NR_024021 OACYLP ACYL3P O-acyltransferase like, pseudogene pseudo 203.75-26 chr3 122333635 122334315 + 0.5 NA intron (NM_005213, intron 1 of 2) intron (NM_005213, intron 1 of 2) 8727 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 178.75-57 chr5 120456748 120457255 + 0.5 NA Intergenic Intergenic -7277 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 157-92 chr8 67543839 67544256 + 0.5 NA intron (NM_020361, intron 2 of 10) AluJo|SINE|Alu 200213 NR_136223 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 148.5-71 chr4 59165713 59166054 + 0.5 NA Intergenic AluSx|SINE|Alu 152310 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 169-11 chr11 26930973 26931599 + 0.5 NA Intergenic Intergenic -62826 NM_203371 387758 Hs.712718 NM_203371 ENSG00000176971 FIBIN - fin bud initiation factor homolog protein-coding 156.75-6 chr1 170462770 170463313 + 0.5 NA intron (NR_125958, intron 1 of 2) intron (NR_125958, intron 1 of 2) -69081 NM_001146039 92344 Hs.183702 NM_152281 ENSG00000120370 GORAB GO|NTKLBP1|SCYL1BP1 golgin, RAB6 interacting protein-coding 167.5-6 chr1 85560356 85560877 + 0.5 NA intron (NM_001134445, intron 1 of 6) L1MEf|LINE|L1 17584 NM_001134445 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 181.5-38 chr2 139869536 139870127 + 0.5 NA Intergenic Intergenic 716854 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 190.25-55 chr8 69988836 69989407 + 0.5 NA Intergenic Intergenic 82131 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 156-5 chr1 180538816 180539285 + 0.5 NA Intergenic MER5A|DNA|hAT-Charlie -19924 NR_125716 148756 NR_125716 ENSG00000236719 OVAAL LINC01131|OVAL ovarian adenocarcinoma amplified long non-coding RNA ncRNA 187.75-75 chr8 138003945 138004465 + 0.5 NA intron (NR_161374, intron 2 of 7) L1ME1|LINE|L1 79340 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 160.75-68 chr2 179498344 179498928 + 0.5 NA intron (NR_148056, intron 5 of 9) L1M1|LINE|L1 63952 NM_001113398 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 170.75-67 chr8 15786364 15786779 + 0.5 NA Intergenic Intergenic 246308 NM_001356429 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 161-86 chr8 48325670 48326106 + 0.5 NA Intergenic Intergenic -225679 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 172.25-4 chr10 16566850 16567451 + 0.5 NA Intergenic Intergenic -45271 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 146.25-55 chr3 6850447 6850850 + 0.5 NA Intergenic AluSz6|SINE|Alu -10467 NM_181874 2917 Hs.606393 NM_000844 ENSG00000196277 GRM7 GLUR7|GPRC1G|MGLU7|MGLUR7|PPP1R87 glutamate metabotropic receptor 7 protein-coding 157.25-103 chr8 90437615 90438211 + 0.5 NA Intergenic Intergenic 168150 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 155.25-11 chr10 95505109 95505555 + 0.5 NA intron (NM_001290295, intron 1 of 24) intron (NM_001290295, intron 1 of 24) 56039 NM_001290294 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 207.25-22 chr15 92143012 92143830 + 0.5 NA intron (NR_135775, intron 7 of 10) (AT)n|Simple_repeat|Simple_repeat -250460 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 170.75-39 chr21 30509889 30510291 + 0.5 NA Intergenic Intergenic -7949 NM_181611 337972 Hs.553694 NM_181611 ENSG00000186977 KRTAP19-5 KAP19.5 keratin associated protein 19-5 protein-coding 199.25-55 chr6 34380616 34381200 + 0.5 NA intron (NM_001202470, intron 5 of 8) intron (NM_001202470, intron 5 of 8) 11761 NM_006703 11165 Hs.188882 NM_006703 ENSG00000272325 NUDT3 DIPP|DIPP-1|DIPP1 nudix hydrolase 3 protein-coding 204.75-55 chr8 81098477 81099042 + 0.5 NA intron (NM_018440, intron 1 of 8) intron (NM_018440, intron 1 of 8) 13309 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 158.25-96 chr6 63452889 63453483 + 0.5 NA Intergenic L1M5|LINE|L1 -118826 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 165-15 chr11 106250465 106250909 + 0.5 NA promoter-TSS (NR_120551) promoter-TSS (NR_120551) 668 NR_120552 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 287.25-3 chr2 124438879 124439616 + 0.5 NA intron (NM_130773, intron 5 of 23) intron (NM_130773, intron 5 of 23) 413960 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 176.5-80 chr7 62563483 62564015 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 740307 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 181.5-37 chr2 104055229 104055663 + 0.5 NA Intergenic Intergenic 352886 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 164-80 chr7 105157259 105157792 + 0.5 NA intron (NM_182692, intron 7 of 15) intron (NM_182692, intron 7 of 15) 111552 NM_001350745 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 185.25-21 chr14 54412838 54413426 + 0.5 NA intron (NM_001330173, intron 5 of 8) intron (NM_001330173, intron 5 of 8) 16125 NM_005192 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 169-68 chr8 96951482 96952082 + 0.5 NA TTS (NR_125390) TTS (NR_125390) 306540 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 157.25-98 chr8 72541295 72541872 + 0.5 NA intron (NM_004770, intron 1 of 2) intron (NM_004770, intron 1 of 2) 4358 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 150.75-103 chrX 21903519 21903911 + 0.5 NA Intergenic L1ME4a|LINE|L1 -36858 NM_001258423 6611 Hs.724874 NM_004595 ENSG00000102172 SMS MRSR|SPMSY|SRS|SpS spermine synthase protein-coding 193-9 chr10 105400212 105400686 + 0.5 NA Intergenic L1MC1|LINE|L1 419884 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 150-70 chr4 155345407 155345734 + 0.5 NA 3' UTR (NM_001039580, exon 14 of 14) 3' UTR (NM_001039580, exon 14 of 14) -8646 NR_125937 102724776 Hs.61271 NR_125937 ENSG00000250910 LOC102724776 - uncharacterized LOC102724776 ncRNA 215.5-24 chr2 22289186 22289693 + 0.5 NA Intergenic Intergenic -247040 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 154-68 chr3 96687590 96688020 + 0.5 NA Intergenic Intergenic -126789 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 192.5-11 chr13 54862170 54862833 + 0.5 NA Intergenic Intergenic -311953 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 181.5-11 chr10 91567606 91568154 + 0.5 NA intron (NR_024467, intron 1 of 4) intron (NR_024467, intron 1 of 4) 43580 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 199.75-4 chr1 194531309 194531887 + 0.5 NA Intergenic L1PBa|LINE|L1 1226853 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 176-43 chr3 81442155 81442557 + 0.5 NA Intergenic Intergenic 319289 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 202-3 chr11 104558555 104559091 + 0.5 NA Intergenic L1M4b|LINE|L1 50479 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 179-26 chr2 72762744 72763253 + 0.5 NA intron (NR_135774, intron 1 of 19) L1MEc|LINE|L1 63035 NM_001321730 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 162.75-50 chr3 122356893 122357399 + 0.5 NA Intergenic AluJr|SINE|Alu 26085 NM_001017928 131076 Hs.220594 NM_001017928 ENSG00000160124 CCDC58 - coiled-coil domain containing 58 protein-coding 165.75-16 chr10 27908659 27909248 + 0.5 NA intron (NM_001290021, intron 9 of 13) intron (NM_001290021, intron 9 of 13) 72918 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 164.5 chr1 35303065 35303565 + 0.5 NA intron (NM_001350140, intron 2 of 27) AluJb|SINE|Alu 34606 NM_001350139 9202 Hs.269211 NM_005095 ENSG00000146463 ZMYM4 CDIR|MYM|ZNF198L3|ZNF262 zinc finger MYM-type containing 4 protein-coding 147-10 chr10 53055925 53056376 + 0.5 NA Intergenic L1MCa|LINE|L1 -284450 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 161 chr1 12655794 12656232 + 0.5 NA intron (NM_001013630, intron 2 of 3) MER52-int|LTR|ERV1 11466 NM_001013630 343066 Hs.209954 NM_001013630 ENSG00000204518 AADACL4 - arylacetamide deacetylase like 4 protein-coding 220.25-9 chr12 130930443 130931072 + 0.5 NA Intergenic AluSp|SINE|Alu -23150 NM_001330497 283383 Hs.719239 NM_198827 ENSG00000111452 ADGRD1 GPR133|PGR25 adhesion G protein-coupled receptor D1 protein-coding 167.25-3 chr1 112701542 112702187 + 0.5 NA intron (NM_001042678, intron 4 of 4) intron (NM_001042678, intron 4 of 4) 5192 NM_001042679 389 Hs.502659 NM_175744 ENSG00000155366 RHOC ARH9|ARHC|H9|RHOH9 ras homolog family member C protein-coding 206.5-18 chr17 32859002 32859492 + 0.5 NA intron (NM_015194, intron 1 of 21) L1MC4|LINE|L1 17877 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 163.5-5 chr1 103968852 103969309 + 0.5 NA Intergenic L1MB3|LINE|L1 -103943 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 240.5-26 chr6 54981176 54981901 + 0.5 NA Intergenic Intergenic -124922 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 182.75-37 chr2 186404232 186404721 + 0.5 NA Intergenic L1M3|LINE|L1 -81784 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 196.75-11 chr11 76336222 76336876 + 0.5 NA Intergenic Intergenic 44416 NR_130898 5612 Hs.503315 NM_004705 ENSG00000137492 THAP12 DAP4|P52rIPK|PRKRIR|THAP0 THAP domain containing 12 protein-coding 146.75-24 chr12 117470653 117471110 + 0.5 NA intron (NM_173598, intron 18 of 19) intron (NM_173598, intron 18 of 19) -109079 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 193-8 chr10 91602360 91603093 + 0.5 NA intron (NR_024467, intron 1 of 4) intron (NR_024467, intron 1 of 4) 8734 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 182.5-13 chr12 65097848 65098305 + 0.5 NA intron (NM_007191, intron 2 of 9) intron (NM_007191, intron 2 of 9) 23229 NM_007191 11197 Hs.284122 NM_007191 ENSG00000156076 WIF1 WIF-1 WNT inhibitory factor 1 protein-coding 227.75-9 chr13 32882974 32883462 + 0.5 NA intron (NR_047020, intron 3 of 4) intron (NR_047020, intron 3 of 4) 28434 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 178.75-43 chr3 120907978 120908526 + 0.5 NA promoter-TSS (NR_145516) promoter-TSS (NR_145516) 47 NM_001308330 9515 Hs.477315 NM_014980 ENSG00000145087 STXBP5L LLGL4 syntaxin binding protein 5 like protein-coding 162.25-65 chr4 161386521 161386960 + 0.5 NA intron (NM_001128428, intron 14 of 14) intron (NM_001128428, intron 14 of 14) -635993 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 182 chr1 72558707 72559358 + 0.5 NA Intergenic LTR78B|LTR|ERV1 -276493 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 166.5-98 chrX 129929360 129929942 + 0.5 NA 3' UTR (NM_006649, exon 15 of 15) 3' UTR (NM_006649, exon 15 of 15) 23487 NM_006649 10813 Hs.458598 NM_006649 ENSG00000156697 UTP14A NYCO16|SDCCAG16|Utp14|dJ537K23.3 UTP14A small subunit processome component protein-coding 160.75-7 chr1 113547913 113548383 + 0.5 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 157633 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 158.75-54 chr3 153517492 153517987 + 0.5 NA intron (NR_146713, intron 5 of 6) THE1A|LTR|ERVL-MaLR 33244 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 145.75-59 chr2 169910779 169911260 + 0.5 NA intron (NM_172070, intron 10 of 38) intron (NM_172070, intron 10 of 38) 83511 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 155.25-30 chr15 63273025 63273482 + 0.5 NA Intergenic Intergenic -4297 NM_001145646 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 148.75-4 chr1 186024071 186024489 + 0.5 NA intron (NM_031935, intron 36 of 106) intron (NM_031935, intron 36 of 106) -271993 NM_001127710 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 181.25-59 chr8 127342537 127343145 + 0.5 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -57558 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 150.75-100 chr9 24244833 24245412 + 0.5 NA Intergenic Intergenic 300554 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 180.75-26 chr18 1478961 1479517 + 0.5 NA Intergenic Intergenic -119610 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 180.25-39 chr20 56462195 56462682 + 0.5 NA Intergenic AluJo|SINE|Alu -6147 NM_001283036 51507 Hs.517134 NM_016407 ENSG00000022277 RTF2 C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3 replication termination factor 2 protein-coding 150.25-52 chr2 124231733 124232143 + 0.5 NA intron (NM_130773, intron 2 of 23) intron (NM_130773, intron 2 of 23) 206651 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 174.25-72 chr8 121410596 121411173 + 0.5 NA Intergenic L1MA3|LINE|L1 -228462 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 151.75-49 chr2 123508009 123508350 + 0.5 NA Intergenic L1ME1|LINE|L1 -434698 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 263.5-12 chr17 26882693 26883639 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 206075 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 163.5-70 chr3 39491119 39491551 + 0.5 NA intron (NR_103506, intron 2 of 2) MIRb|SINE|MIR -10731 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 165.5-24 chr12 59861214 59861865 + 0.5 NA Intergenic Intergenic 172169 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 147.75-105 chr7 107552588 107553128 + 0.5 NA intron (NM_181733, intron 3 of 20) L1PA16|LINE|L1 -11099 NR_073005 11062 Hs.97627 NM_181581 ENSG00000105865 DUS4L DUS4|PP35 dihydrouridine synthase 4 like protein-coding 151.5-6 chr1 193671677 193672061 + 0.5 NA Intergenic Intergenic 367124 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 154-19 chr11 115388386 115388879 + 0.5 NA intron (NM_001098517, intron 1 of 8) L1MC4|LINE|L1 -8124 NR_135102 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 155.75-42 chr16 53706522 53706992 + 0.5 NA intron (NM_001363897, intron 1 of 7) L1ME1|LINE|L1 2601 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 154.75-67 chr3 186247920 186248468 + 0.5 NA intron (NM_001346, intron 19 of 24) intron (NM_001346, intron 19 of 24) 114040 NM_001346 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 162-44 chr22 41704076 41704543 + 0.5 NA intron (NM_152513, intron 2 of 30) intron (NM_152513, intron 2 of 30) 4806 NM_152513 150365 Hs.116419 NM_152513 ENSG00000167077 MEI1 HYDM3|SPATA38 meiotic double-stranded break formation protein 1 protein-coding 220-31 chr7 46090753 46091436 + 0.5 NA Intergenic L1PA15|LINE|L1 -169822 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 166.75-73 chr5 110428831 110429371 + 0.5 NA intron (NM_001039763, intron 12 of 13) L2c|LINE|L2 84814 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 186-45 chr6 115469645 115470225 + 0.5 NA Intergenic Intergenic 173900 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 158.25-95 chr6 43591446 43591927 + 0.5 NA intron (NM_006502, intron 4 of 10) Charlie4z|DNA|hAT-Charlie 15501 NM_001291970 5429 Hs.655467 NM_006502 ENSG00000170734 POLH RAD30|RAD30A|XP-V|XPV DNA polymerase eta protein-coding 153.5-21 chr11 112346995 112347513 + 0.5 NA intron (NR_126004, intron 2 of 3) intron (NR_126004, intron 2 of 3) 76505 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LINC02762 - long intergenic non-protein coding RNA 2762 ncRNA 174-13 chr11 23005312 23005899 + 0.5 NA Intergenic L1PA17|LINE|L1 -145131 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 164-52 chr3 169981431 169981806 + 0.5 NA intron (NM_003262, intron 3 of 7) intron (NM_003262, intron 3 of 7) 14811 NM_003262 7095 Hs.744859 NM_003262 ENSG00000008952 SEC62 Dtrp1|HTP1|TLOC1|TP-1 SEC62 homolog, preprotein translocation factor protein-coding 172.5-22 chr13 100369257 100369919 + 0.5 NA intron (NR_148027, intron 20 of 23) intron (NR_148027, intron 20 of 23) 111427 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 231-12 chr2 157424333 157424874 + 0.5 NA intron (NM_004288, intron 6 of 7) AluJo|SINE|Alu 19486 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 149.25-29 chr14 59915088 59915480 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -4429 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 183.75-93 chr8 105872372 105872804 + 0.5 NA intron (NR_125796, intron 2 of 7) MIR|SINE|MIR 187915 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 155.25-55 chr3 14606249 14606679 + 0.5 NA Intergenic Intergenic -45282 NR_135523 51244 Hs.517820 NM_016474 ENSG00000154781 CCDC174 C3orf19|HSPC212|IHPM|IHPMR coiled-coil domain containing 174 protein-coding 163.5-88 chr5 37024583 37024947 + 0.5 NA intron (NM_015384, intron 30 of 45) intron (NM_015384, intron 30 of 45) 147996 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 153.25-54 chr2 15129771 15130280 + 0.5 NA Intergenic L1MB5|LINE|L1 431309 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 154-6 chr1 78854904 78855470 + 0.5 NA Intergenic Intergenic 151543 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 169.75-47 chr3 18829311 18829907 + 0.5 NA Intergenic Intergenic -318901 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 176.5-45 chr2 179713765 179714193 + 0.5 NA intron (NR_148056, intron 3 of 9) intron (NR_148056, intron 3 of 9) 31687 NM_001352813 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 165-86 chr8 54589747 54590161 + 0.5 NA Intergenic L2a|LINE|L2 -26142 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 153.25-77 chr3 52209524 52209953 + 0.5 NA intron (NM_199166, intron 8 of 10) AluJb|SINE|Alu 11578 NM_000688 211 Hs.476308 NM_000688 ENSG00000023330 ALAS1 ALAS|ALAS-H|ALAS3|ALASH|MIG4 5'-aminolevulinate synthase 1 protein-coding 169.5-2 chr1 57170481 57170996 + 0.5 NA intron (NM_001353980, intron 5 of 5) intron (NM_001353980, intron 5 of 5) -204598 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 232.5-20 chr2 145214012 145214929 + 0.5 NA Intergenic Intergenic 546503 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 191.5-11 chr11 42493003 42493732 + 0.5 NA Intergenic Intergenic -239677 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 156.75-7 chr1 189178804 189179149 + 0.5 NA Intergenic Intergenic 1297034 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 188-28 chr19 50213145 50213723 + 0.5 NA intron (NM_024729, intron 2 of 40) MIRb|SINE|MIR 9806 NM_024729 79784 Hs.467142 NM_024729 ENSG00000105357 MYH14 DFNA4|DFNA4A|FP17425|MHC16|MYH17|NMHC II-C|NMHC-II-C|PNMHH|myosin myosin heavy chain 14 protein-coding 146.75-10 chr10 29418887 29419326 + 0.5 NA intron (NR_110927, intron 2 of 2) L1MB4|LINE|L1 8863 NR_110928 102724316 Hs.499209 NR_003930 ENSG00000224597 SVIL-AS1 - SVIL antisense RNA 1 ncRNA 157.75-25 chr12 60714901 60715426 + 0.5 NA Intergenic AluSx|SINE|Alu 1025793 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 179.25-67 chr6 13988390 13989046 + 0.5 NA Intergenic HAL1|LINE|L1 63525 NM_001165033 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 159.75-81 chr5 39297103 39297696 + 0.5 NA intron (NM_001737, intron 9 of 10) L1MEc|LINE|L1 -26750 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 191.25-44 chr21 34836144 34836767 + 0.5 NA intron (NM_001001890, intron 3 of 5) intron (NM_001001890, intron 3 of 5) 52244 NM_001001890 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 159.75-99 chr8 142909773 142910260 + 0.5 NA TTS (NM_000498) TTS (NM_000498) 7827 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 158-56 chr4 66321411 66321961 + 0.5 NA Intergenic Intergenic 44862 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 236-16 chr17 68759652 68760466 + 0.5 NA Intergenic Intergenic 131905 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 177.5-2 chr1 57275000 57275660 + 0.5 NA intron (NM_001353980, intron 5 of 5) intron (NM_001353980, intron 5 of 5) 147782 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 153.5-16 chr10 117623855 117624430 + 0.5 NA Intergenic L1ME3A|LINE|L1 -79074 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 153.75-84 chr8 26283495 26283956 + 0.5 NA Intergenic Intergenic -7783 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 155.5-103 chr8 38940936 38941326 + 0.5 NA intron (NM_021623, intron 3 of 11) AluSz|SINE|Alu -33097 NM_153692 203100 Hs.661014 NM_153692 ENSG00000169495 HTRA4 - HtrA serine peptidase 4 protein-coding 241.75-25 chr8 50184666 50185575 + 0.5 NA intron (NR_135797, intron 2 of 20) THE1D|LTR|ERVL-MaLR 20989 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 156.25-39 chr2 59007884 59008404 + 0.5 NA intron (NR_033873, intron 7 of 13) MLT1G1|LTR|ERVL-MaLR -209564 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 156-92 chr8 80189285 80189773 + 0.5 NA Intergenic MER89-int|LTR|ERV1 -17965 NM_001025253 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 162-62 chr5 27841776 27842237 + 0.5 NA Intergenic MER41B|LTR|ERV1 369714 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 280.25-14 chr9 12986361 12987205 + 0.5 NA Intergenic Intergenic -14150 NR_132976 106635615 NR_132976 SNORD137 - small nucleolar RNA, C/D box 137 snoRNA 165.75-90 chr6 141811410 141811945 + 0.5 NA Intergenic Intergenic 277122 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 213.75-19 chr3 53935046 53935818 + 0.5 NA Intergenic L1MEf|LINE|L1 -43573 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 244-9 chr15 36425821 36426542 + 0.5 NA Intergenic Intergenic -153445 NM_001321758 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 153.5-100 chr7 88953536 88953991 + 0.5 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -158026 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 146-57 chr3 167336476 167336971 + 0.5 NA intron (NM_001199202, intron 9 of 20) intron (NM_001199202, intron 9 of 20) 43560 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 145.75-98 chr5 160789113 160789468 + 0.5 NA intron (NM_001366652, intron 1 of 24) Tigger3a|DNA|TcMar-Tigger 62921 NM_001366653 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 146.25-98 chr8 88011730 88012232 + 0.5 NA Intergenic L1MC4a|LINE|L1 -137966 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 157-7 chr1 236808919 236809499 + 0.5 NA intron (NM_000254, intron 4 of 32) intron (NM_000254, intron 4 of 32) 13917 NM_001291940 4548 Hs.498187 NM_000254 ENSG00000116984 MTR HMAG|MS|cblG 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 162-7 chr10 62601644 62602090 + 0.5 NA intron (NM_199452, intron 1 of 6) L1M4|LINE|L1 81419 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 154.25-44 chr2 30154593 30154957 + 0.5 NA intron (NM_001127400, intron 2 of 3) AluSx|SINE|Alu 7768 NM_001127399 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 153.25-67 chr2 173132669 173133108 + 0.5 NA intron (NM_133646, intron 2 of 11) MIR|SINE|MIR 57042 NM_133646 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 165-21 chr12 121497746 121498108 + 0.5 NA intron (NM_001005366, intron 11 of 22) AluSz|SINE|Alu -53575 NR_106957 102465665 NR_106957 ENSG00000284402 MIR7107 hsa-mir-7107 microRNA 7107 ncRNA 228-8 chr12 61218385 61219072 + 0.5 NA Intergenic L2c|LINE|L2 974111 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 158.25 chr1 4931579 4932079 + 0.5 NA Intergenic Intergenic 277220 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 191.5-7 chr10 16067122 16067675 + 0.5 NA Intergenic L1PA16|LINE|L1 -206865 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 153.5-32 chr14 82118055 82118566 + 0.5 NA Intergenic L1ME4c|LINE|L1 -375172 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 179.75-20 chr16 72724281 72724990 + 0.5 NA Intergenic Intergenic -59665 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 189-55 chr6 118772604 118773122 + 0.5 NA Intergenic MIR|SINE|MIR -9845 NR_037662 100287632 Hs.334026 NR_037662 SELENOKP3 - selenoprotein K pseudogene 3 pseudo 149-17 chr12 105877870 105878375 + 0.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 171348 NR_110111 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 145.75-110 chr7 21753292 21753622 + 0.5 NA intron (NM_001277115, intron 54 of 81) intron (NM_001277115, intron 54 of 81) 192442 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 151-31 chr17 70587981 70588548 + 0.5 NA Intergenic Intergenic 418729 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 156.25-11 chr11 43886310 43886651 + 0.5 NA intron (NM_139178, intron 4 of 9) intron (NM_139178, intron 4 of 9) 5649 NM_139178 221120 Hs.720708 NM_139178 ENSG00000166199 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1|hABH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding 224.25-16 chr18 75929119 75929898 + 0.5 NA Intergenic Intergenic -193490 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 149-72 chr4 32252744 32253179 + 0.5 NA Intergenic L2a|LINE|L2 -98077 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 210.5-54 chr9 122805942 122806584 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR 6140 NM_080859 392392 Hs.632681 NM_080859 ENSG00000165204 OR1K1 hg99 olfactory receptor family 1 subfamily K member 1 protein-coding 152-16 chr12 23170679 23171149 + 0.5 NA Intergenic Intergenic -4722 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 154.5-101 chr9 103945377 103945939 + 0.5 NA Intergenic Intergenic -54051 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 153.25-41 chr14 75151080 75151537 + 0.5 NA intron (NM_006827, intron 2 of 4) AluSz|SINE|Alu -24260 NM_001329238 91754 Hs.7200 NM_033116 ENSG00000119638 NEK9 APUG|LCCS10|NC|NERCC|NERCC1 NIMA related kinase 9 protein-coding 179-16 chr15 60179876 60180420 + 0.5 NA Intergenic Intergenic 175837 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 302 chr10 21086159 21086959 + 0.5 NA intron (NM_001173484, intron 2 of 6) AluJb|SINE|Alu -87431 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 153.75-96 chr9 28808252 28808740 + 0.5 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 55210 NR_030597 100126310 NR_030597 ENSG00000215966 MIR876 MIRN876|hsa-mir-876|mir-876 microRNA 876 ncRNA 183-5 chr10 25475263 25475751 + 0.5 NA intron (NM_020752, intron 5 of 10) intron (NM_020752, intron 5 of 10) -176205 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 163.5-75 chr3 117812495 117812859 + 0.5 NA Intergenic Intergenic -121752 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 172.5-6 chr10 62832880 62833563 + 0.5 NA Intergenic L1MA7|LINE|L1 -14054 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 157.75-80 chr4 134372014 134372401 + 0.5 NA Intergenic L1PA16|LINE|L1 -51661 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 172.75-43 chr3 70324664 70325203 + 0.5 NA Intergenic Intergenic -12295 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 154 chr1 23392815 23393362 + 0.5 NA intron (NM_003196, intron 8 of 10).2 MER1A|DNA|hAT-Charlie -23252 NM_001370652 80818 Hs.293798 NM_030634 ENSG00000125945 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 207.5-11 chr12 26597256 26597762 + 0.5 NA intron (NM_002223, intron 30 of 56) intron (NM_002223, intron 30 of 56) 235685 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 170.25-23 chr16 50835736 50836283 + 0.5 NA Intergenic Intergenic 29337 NR_146573 105371252 NR_146573 ENSG00000261703 LINC02168 - long intergenic non-protein coding RNA 2168 ncRNA 199.75 chr1 75638714 75639145 + 0.5 NA Intergenic L1MA8|LINE|L1 -22766 NM_001320283 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 166.75-98 chr9 74254954 74255504 + 0.5 NA Intergenic L1MEd|LINE|L1 -116302 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 186.75-6 chr1 238330599 238331178 + 0.5 NA Intergenic Intergenic 155129 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 247.75-6 chr12 81187677 81188377 + 0.5 NA intron (NM_024560, intron 8 of 15) intron (NM_024560, intron 8 of 15) 29639 NR_039848 100616133 NR_039848 ENSG00000265227 MIR4699 - microRNA 4699 ncRNA 184.5-57 chr4 111202288 111202945 + 0.5 NA Intergenic Intergenic -341969 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 184.75-13 chr11 39688884 39689311 + 0.5 NA Intergenic Intergenic 604033 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 153.25-107 chr7 79305083 79305595 + 0.5 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -147618 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 157-75 chr5 105875279 105875685 + 0.5 NA Intergenic Intergenic 776008 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 146.25-29 chr14 67161885 67162373 + 0.5 NA intron (NM_001024218, intron 18 of 21) intron (NM_001024218, intron 18 of 21) -27311 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 221.5-20 chr16 65412883 65413467 + 0.5 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 163125 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 148.5-43 chr2 67101405 67101948 + 0.5 NA intron (NR_110564, intron 1 of 4) L1ME4b|LINE|L1 15230 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 208.5-50 chr5 24046407 24047039 + 0.5 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 95375 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 157-55 chr20 57858695 57859151 + 0.5 NA Intergenic L1MB7|LINE|L1 -144981 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 173.25-68 chr7 41381760 41382260 + 0.5 NA Intergenic Intergenic 280406 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 189-25 chr18 71577671 71578212 + 0.5 NA intron (NR_038326, intron 1 of 4) L1MC3|LINE|L1 1015 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 171.25-26 chr17 55749678 55750124 + 0.5 NA Intergenic Intergenic -1150 NM_001330378 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 162.75-3 chr1 170406232 170406819 + 0.5 NA Intergenic MLT2A1|LTR|ERVL -122317 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 166-30 chr16 81384132 81384753 + 0.5 NA promoter-TSS (NR_039871) promoter-TSS (NR_039871) -576 NR_039871 100616150 NR_039871 ENSG00000284473 MIR4720 - microRNA 4720 ncRNA 150-30 chr15 65886935 65887436 + 0.5 NA intron (NM_004663, intron 4 of 4) AluSx1|SINE|Alu 17694 NM_001206836 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 163.75-73 chr8 118891048 118891596 + 0.5 NA Intergenic HSMAR2|DNA|TcMar-Mariner 60563 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 145.75-45 chr18 66599599 66599950 + 0.5 NA intron (NM_001271028, intron 1 of 9) intron (NM_001271028, intron 1 of 9) 4316 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 166.75-44 chr2 199965637 199966127 + 0.5 NA Intergenic L1M5|LINE|L1 -10391 NR_004862 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 206-38 chr9 88583798 88584332 + 0.5 NA Intergenic Intergenic 48887 NM_145283 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2|RdCVF2L nucleoredoxin like 2 protein-coding 176.5-37 chr2 56845064 56845546 + 0.5 NA Intergenic L2|LINE|L2 -659535 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 160.25-64 chr6 116855362 116855888 + 0.5 NA Intergenic L1PA11|LINE|L1 -21617 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 194.25-5 chr10 100742923 100743392 + 0.5 NA intron (NM_001304569, intron 1 of 10) intron (NM_001304569, intron 1 of 10) -2425 NM_003988 5076 Hs.155644 NM_000278 ENSG00000075891 PAX2 FSGS7|PAPRS paired box 2 protein-coding 165.75-26 chr12 32605925 32606383 + 0.5 NA intron (NM_001370297, intron 5 of 14) MIRc|SINE|MIR 71861 NM_001304480 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 156.5-78 chr4 101364920 101365529 + 0.5 NA Intergenic L1ME3C|LINE|L1 17447 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 200.5-59 chr8 89095005 89095777 + 0.5 NA Intergenic Intergenic 662320 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 146.5-2 chr1 100025652 100026169 + 0.5 NA 3' UTR (NM_012243, exon 8 of 8) 3' UTR (NM_012243, exon 8 of 8) -12185 NM_033055 64645 Hs.124156 NM_033055 ENSG00000156875 MFSD14A HIAT1 major facilitator superfamily domain containing 14A protein-coding 150.75-47 chr2 210657932 210658456 + 0.5 NA intron (NR_163592, intron 20 of 27) intron (NR_163592, intron 20 of 27) 40623 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 174.25-27 chr2 72385721 72386363 + 0.5 NA intron (NM_001321729, intron 18 of 22) L1MA9|LINE|L1 -238180 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 189.75-37 chr2 42222361 42222983 + 0.5 NA intron (NM_001145076, intron 1 of 21) intron (NM_001145076, intron 1 of 21) -52441 NR_110584 102723824 Hs.639826 NR_110584 LOC102723824 - uncharacterized LOC102723824 ncRNA 165-55 chr3 14170598 14171007 + 0.5 NA intron (NM_001354726, intron 2 of 14) intron (NM_001354726, intron 2 of 14) 7799 NR_148950 7508 Hs.475538 NM_004628 ENSG00000154767 XPC RAD4|XP3|XPCC|p125 XPC complex subunit, DNA damage recognition and repair factor protein-coding 149-4 chr1 113076577 113077074 + 0.5 NA intron (NM_014813, intron 1 of 17) intron (NM_014813, intron 1 of 17) 3627 NM_001312686 9860 Hs.448972 NM_014813 ENSG00000198799 LRIG2 LIG-2|LIG2|UFS2 leucine rich repeats and immunoglobulin like domains 2 protein-coding 152.75-84 chr6 121721483 121721937 + 0.5 NA Intergenic Intergenic 286064 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 241.75-13 chr2 200579969 200580726 + 0.5 NA intron (NM_152524, intron 8 of 8) L1M3|LINE|L1 -5667 NM_001159 316 Hs.406238 NM_001159 ENSG00000138356 AOX1 AO|AOH1 aldehyde oxidase 1 protein-coding 170.25-36 chr2 189622066 189622511 + 0.5 NA Intergenic L2a|LINE|L2 -39111 NM_001353493 110599588 Hs.101364 NM_001353493 ENSG00000286053 ASDURF ASNSD1|ASNSD1-SEP|NS3TP1 ASNSD1 upstream reading frame protein-coding 212.25-31 chr5 3148219 3148930 + 0.5 NA Intergenic L1MD1|LINE|L1 -29261 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 152.75-35 chr15 52620389 52620934 + 0.5 NA intron (NM_019600, intron 2 of 12) intron (NM_019600, intron 2 of 12) 31379 NM_001286495 56204 Hs.152385 NM_019600 ENSG00000047346 FAM214A KIAA1370 family with sequence similarity 214 member A protein-coding 195.25-19 chr18 1178523 1179131 + 0.5 NA Intergenic L1MB1|LINE|L1 180802 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 155.5-41 chr2 10631989 10632574 + 0.5 NA intron (NR_048552, intron 12 of 19) L2a|LINE|L2 57694 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 228.75-12 chr2 72281118 72281853 + 0.5 NA intron (NR_135773, intron 19 of 21) L1MC1|LINE|L1 -133623 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 169.5-38 chr17 78709645 78710082 + 0.5 NA intron (NM_004762, intron 1 of 12) intron (NM_004762, intron 1 of 12) 7169 NM_001292019 9267 Hs.191215 NM_004762 ENSG00000108669 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 209-40 chr6 64480098 64480605 + 0.5 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 673515 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 183.5-60 chr5 83212122 83212845 + 0.5 NA intron (NM_001318012, intron 6 of 7) L1M4a2|LINE|L1 134936 NM_001318012 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 185.75-90 chr9 68882299 68882838 + 0.5 NA intron (NM_003558, intron 6 of 15) intron (NM_003558, intron 6 of 15) 93273 NR_110647 101927069 Hs.663405 NR_110647 LOC101927069 - uncharacterized LOC101927069 ncRNA 145.75-67 chr21 27066682 27067046 + 0.5 NA Intergenic L1PA16|LINE|L1 -99776 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 160.25-50 chr3 196767297 196767814 + 0.5 NA intron (NM_002577, intron 1 of 14) AluY|SINE|Alu 27698 NM_002577 5062 Hs.518530 NM_002577 ENSG00000180370 PAK2 PAK65|PAKgamma p21 (RAC1) activated kinase 2 protein-coding 175.75-27 chr17 80014750 80015310 + 0.5 NA intron (NM_019020, intron 1 of 11) intron (NM_019020, intron 1 of 11) 20842 NM_019020 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 160.25 chr1 32081918 32082282 + 0.5 NA intron (NM_018056, intron 5 of 8) HAL1|LINE|L1 -4849 NR_049850 100847018 NR_049850 ENSG00000266203 MIR5585 - microRNA 5585 ncRNA 210.5-31 chr5 18093377 18094201 + 0.5 NA Intergenic Tigger19b|DNA|TcMar-Tigger 286515 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 161-18 chr11 112205450 112205924 + 0.5 NA intron (NM_031938, intron 8 of 11) AluJo|SINE|Alu -20741 NM_000317 5805 Hs.503860 NM_000317 ENSG00000150787 PTS PTPS 6-pyruvoyltetrahydropterin synthase protein-coding 170.75-62 chr6 165587487 165587998 + 0.5 NA intron (NM_006661, intron 1 of 22) intron (NM_006661, intron 1 of 22) 74358 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 171.5-32 chr15 68105390 68105951 + 0.5 NA intron (NM_016166, intron 2 of 13) intron (NM_016166, intron 2 of 13) 51094 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 155.25-64 chr4 53759761 53760202 + 0.5 NA Intergenic L1MA7|LINE|L1 64080 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 178.5-55 chr5 124137240 124137893 + 0.5 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 300954 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 155-92 chr6 163453635 163454073 + 0.5 NA intron (NM_206853, intron 1 of 6) intron (NM_206853, intron 1 of 6) 39136 NM_206853 9444 Hs.510324 NM_006775 ENSG00000112531 QKI Hqk|QK|QK1|QK3|hqkI QKI, KH domain containing RNA binding protein-coding 151.5-107 chr9 35684283 35684665 + 0.5 NA intron (NM_003289, intron 7 of 8) intron (NM_003289, intron 7 of 8) 5451 NM_001301226 7169 Hs.300772 NM_003289 ENSG00000198467 TPM2 AMCD1|DA1|DA2B|DA2B4|HEL-S-273|NEM4|TMSB tropomyosin 2 protein-coding 279.75-7 chr19 30593736 30594440 + 0.5 NA intron (NM_001352260, intron 4 of 5) intron (NM_001352260, intron 4 of 5) 221704 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 194.25-36 chr5 15101913 15102348 + 0.5 NA Intergenic Intergenic 164430 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 172.75-36 chr2 168828418 168828806 + 0.5 NA intron (NM_001039724, intron 5 of 15) intron (NM_001039724, intron 5 of 15) 26015 NM_052946 115677 Hs.189780 NM_052946 ENSG00000163072 NOSTRIN DaIP2 nitric oxide synthase trafficking protein-coding 187-28 chr3 7891499 7892115 + 0.5 NA Intergenic L2a|LINE|L2 124500 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 149.75-60 chr3 131707628 131708002 + 0.5 NA intron (NM_130808, intron 3 of 15) intron (NM_130808, intron 3 of 15) -204844 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 152.25-28 chr14 70879316 70879732 + 0.5 NA Intergenic MER57B2|LTR|ERV1 -27935 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 149.5-73 chr5 64300615 64301093 + 0.5 NA intron (NM_001113561, intron 5 of 7) intron (NM_001113561, intron 5 of 7) 135011 NM_001323292 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 179-55 chr6 126923471 126923968 + 0.5 NA Intergenic Intergenic -194952 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 157.75-27 chr12 95931507 95932067 + 0.5 NA intron (NM_182496, intron 2 of 15) L2a|LINE|L2 10827 NM_182496 120935 Hs.210377 NM_182496 ENSG00000165972 CCDC38 - coiled-coil domain containing 38 protein-coding 148.75-75 chr5 6382634 6383106 + 0.5 NA Intergenic L1MEi|LINE|L1 -4323 NM_032286 84246 Hs.13885 NM_032286 ENSG00000133398 MED10 L6|NUT2|TRG20 mediator complex subunit 10 protein-coding 180.75-23 chr17 59041200 59041648 + 0.5 NA intron (NR_148346, intron 17 of 23) intron (NR_148346, intron 17 of 23) 65456 NM_001353085 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 270.5-3 chr10 89589849 89590676 + 0.5 NA intron (NM_148977, intron 5 of 6) intron (NM_148977, intron 5 of 6) 2565 NR_029524 406901 NR_029524 ENSG00000198997 MIR107 MIRN107|miR-107 microRNA 107 ncRNA 194.25-37 chr5 93845293 93846055 + 0.5 NA intron (NM_032042, intron 7 of 10) ERV3-16A3_I-int|LTR|ERVL -104074 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 189.5-77 chr9 29061971 29062477 + 0.5 NA intron (NM_001354574, intron 1 of 5) L1MB3|LINE|L1 150075 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 159-28 chr18 7542582 7543170 + 0.5 NA Intergenic Intergenic -24440 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 188.25-68 chr9 80492203 80492648 + 0.5 NA Intergenic Intergenic 517402 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 148.25-83 chr7 10363110 10363598 + 0.5 NA Intergenic THE1D-int|LTR|ERVL-MaLR -339322 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 152.75-99 chr8 58585370 58585924 + 0.5 NA intron (NM_001144772, intron 30 of 30) intron (NM_001144772, intron 30 of 30) 32386 NM_005625 6386 Hs.200804 NM_005625 ENSG00000137575 SDCBP MDA-9|MDA9|ST1|SYCL|TACIP18 syndecan binding protein protein-coding 203.75-54 chr9 97790604 97791054 + 0.5 NA intron (NR_147055, intron 5 of 10) intron (NR_147055, intron 5 of 10) 62251 NR_147055 101928337 NR_147055 ENSG00000236130 PTCSC2 - papillary thyroid carcinoma susceptibility candidate 2 ncRNA 233.5-12 chr2 112111458 112112258 + 0.5 NA intron (NM_001329914, intron 17 of 18) intron (NM_001329914, intron 17 of 18) -26527 NM_001128165 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 159.5-64 chr4 58097786 58098332 + 0.5 NA Intergenic Intergenic 438269 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 171.75-8 chr1 179854631 179855262 + 0.5 NA intron (NM_145034, intron 2 of 5) L1ME3Cz|LINE|L1 13894 NM_001349933 163590 Hs.571797 NM_022347 ENSG00000169905 TOR1AIP2 IFRG15|LULL1|NET9 torsin 1A interacting protein 2 protein-coding 172.75-71 chr8 125066856 125067490 + 0.5 NA intron (NM_014846, intron 10 of 28) AluSx|SINE|Alu 24619 NM_014846 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 185.25-72 chr6 92735325 92735979 + 0.5 NA Intergenic L1ME3E|LINE|L1 683907 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 206.25-27 chr3 84208694 84209405 + 0.5 NA Intergenic Zaphod|DNA|hAT-Tip100 660526 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 188.75-8 chr10 32822665 32823084 + 0.5 NA intron (NM_001321115, intron 32 of 43) intron (NM_001321115, intron 32 of 43) 78598 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 197.25-46 chr7 159053436 159054215 + 0.5 NA intron (NR_130758, intron 5 of 12) AluJr|SINE|Alu 43379 NM_001308259 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 165.5-97 chr8 123806126 123806600 + 0.5 NA intron (NM_144963, intron 20 of 23) intron (NM_144963, intron 20 of 23) 37924 NM_001317917 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 147.25-24 chr11 85474725 85475174 + 0.5 NA intron (NM_001142699, intron 3 of 27) L1MEd|LINE|L1 152321 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 194.25-39 chr5 125220621 125221128 + 0.5 NA intron (NR_109882, intron 4 of 5) (AT)n|Simple_repeat|Simple_repeat 184043 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 245.5-31 chr5 158761535 158762292 + 0.5 NA intron (NM_001324107, intron 10 of 15) intron (NM_001324107, intron 10 of 15) 336043 NM_001364159 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 215.25-28 chr3 142192178 142192920 + 0.5 NA intron (NM_001039547, intron 5 of 15) AluSx1|SINE|Alu 33036 NR_033289 256356 Hs.135904 NM_152776 ENSG00000175066 GK5 - glycerol kinase 5 protein-coding 200.25-19 chr15 37144647 37145314 + 0.5 NA Intergenic Intergenic -43669 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 161.25-44 chr3 29382405 29383012 + 0.5 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 101396 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 206.75-14 chr12 5643089 5643821 + 0.5 NA intron (NM_001278596, intron 16 of 25) L1ME3B|LINE|L1 149323 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 161.75-46 chr3 33328111 33328644 + 0.5 NA intron (NR_146129, intron 4 of 15) L1MA4|LINE|L1 50935 NM_001349320 25827 Hs.475872 NM_012157 ENSG00000153558 FBXL2 FBL2|FBL3 F-box and leucine rich repeat protein 2 protein-coding 157.75-93 chr5 137662610 137663193 + 0.5 NA intron (NM_017415, intron 6 of 14) L1ME3G|LINE|L1 -15252 NR_030588 100126343 NR_030588 ENSG00000216009 MIR874 MIRN874|hsa-mir-874|mir-874 microRNA 874 ncRNA 146.5-101 chr8 84393855 84394174 + 0.5 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -21470 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 181.5-55 chr5 33172734 33173393 + 0.5 NA Intergenic L2|LINE|L2 -56672 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 158.25-47 chr18 34628257 34628701 + 0.5 NA intron (NM_001198939, intron 1 of 21) intron (NM_001198939, intron 1 of 21) 35144 NM_001198940 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 175.5-20 chr12 81723854 81724252 + 0.5 NA intron (NM_003625, intron 3 of 32) intron (NM_003625, intron 3 of 32) 34454 NM_001220476 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 231.75-19 chr3 191699904 191700581 + 0.5 NA Intergenic Intergenic 239079 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 157.5-25 chr13 79087776 79088211 + 0.5 NA Intergenic Intergenic -247943 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 180.5-68 chr7 92457524 92458037 + 0.5 NA non-coding (NR_052016, exon 6 of 6) non-coding (NR_052016, exon 6 of 6) 10298 NR_052016 57798 Hs.21145 NM_021167 ENSG00000157259 GATAD1 CMD2B|ODAG|RG083M05.2 GATA zinc finger domain containing 1 protein-coding 204-21 chr2 27657888 27658465 + 0.5 NA intron (NM_001282732, intron 2 of 4) intron (NM_001282732, intron 2 of 4) -5295 NM_018158 22950 Hs.306000 NM_018158 ENSG00000163798 SLC4A1AP HLC3 solute carrier family 4 member 1 adaptor protein protein-coding 196.25-32 chr2 122599143 122599766 + 0.5 NA Intergenic LTR48B|LTR|ERV1 474027 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 163.5-121 chr9 36007415 36007962 + 0.5 NA Intergenic Intergenic -29225 NM_001316348 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 224.75-16 chr15 67391178 67391845 + 0.5 NA intron (NM_001322472, intron 8 of 13) intron (NM_001322472, intron 8 of 13) 129462 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 198.25-2 chr1 243991638 243992404 + 0.5 NA intron (NR_033883, intron 2 of 11) L4_C_Mam|LINE|RTE-X -56918 NM_001278196 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 158.5-57 chr21 28452503 28453032 + 0.5 NA Intergenic LTR81C|LTR|Gypsy -86551 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 150.25-94 chr6 152485346 152485788 + 0.5 NA intron (NM_182961, intron 12 of 145) intron (NM_182961, intron 12 of 145) 105037 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 181-7 chr11 14313499 14314206 + 0.5 NA intron (NM_001177314, intron 1 of 5) MLT1C|LTR|ERVL-MaLR 44633 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 166-40 chr2 105439245 105439817 + 0.5 NA Intergenic AluJo|SINE|Alu -1018 NM_201557 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 154.5-58 chr3 40580290 40580650 + 0.5 NA Intergenic Intergenic 55510 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 183.25-13 chr11 115804507 115805228 + 0.5 NA Intergenic MIR|SINE|MIR -44667 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 169.5-55 chr3 43197567 43198064 + 0.5 NA Intergenic L1ME1|LINE|L1 -88697 NM_001330750 54861 Hs.476052 NM_017719 ENSG00000163788 SNRK HSNFRK SNF related kinase protein-coding 167.25-86 chr9 115870613 115871155 + 0.5 NA Intergenic Intergenic 54323 NR_024032 58483 Hs.23367 NR_024032 ENSG00000204148 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 171.5-25 chr13 67579833 67580339 + 0.5 NA Intergenic (TATTTTG)n|Simple_repeat|Simple_repeat 207699 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 208.75-37 chr8 5791638 5792123 + 0.5 NA Intergenic Intergenic 614668 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 169.5-73 chr5 34802263 34802742 + 0.5 NA intron (NM_015577, intron 4 of 17) intron (NM_015577, intron 4 of 17) -36662 NM_144725 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 166.25-33 chr2 83182443 83182779 + 0.5 NA Intergenic Intergenic 325808 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 157.5-109 chr8 124159056 124159450 + 0.5 NA intron (NR_103547, intron 1 of 4) MLT1O|LTR|ERVL-MaLR 12269 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 157.25-79 chr6 24283694 24284155 + 0.5 NA intron (NM_016356, intron 6 of 9) L2a|LINE|L2 -72979 NM_181337 353219 Hs.697888 NM_181337 ENSG00000146049 KAAG1 RU2AS kidney associated antigen 1 protein-coding 151.75-74 chr5 6114860 6115449 + 0.5 NA Intergenic Intergenic 222138 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 201.75 chr1 104227907 104228492 + 0.5 NA Intergenic MSTB|LTR|ERVL-MaLR 155176 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 163.75-16 chr11 97221712 97222279 + 0.5 NA Intergenic Intergenic 713570 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 298-3 chr3 16976532 16977466 + 0.5 NA intron (NM_015184, intron 1 of 5) intron (NM_015184, intron 1 of 5) 43803 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 184.75-14 chr11 60686404 60686921 + 0.5 NA intron (NR_026946, intron 6 of 6) intron (NR_026946, intron 6 of 6) -12950 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 183-40 chr5 51713175 51713756 + 0.5 NA Intergenic Intergenic -294566 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 222.75-20 chr20 55944201 55944789 + 0.5 NA Intergenic AluSx|SINE|Alu 61024 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 193.25-50 chr5 94645100 94645735 + 0.5 NA intron (NM_032290, intron 5 of 20) intron (NM_032290, intron 5 of 20) 26748 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 160.75-13 chr11 12283446 12283962 + 0.5 NA Intergenic L1MB3|LINE|L1 -3196 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 149.25-13 chr11 33316908 33317349 + 0.5 NA intron (NM_001278162, intron 2 of 15) AluSz6|SINE|Alu 58797 NM_001278162 10114 Hs.201918 NM_005734 ENSG00000110422 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 170.25-2 chr1 111353854 111354441 + 0.5 NA Intergenic AluSx3|SINE|Alu 7525 NM_181643 128344 Hs.172510 NM_181643 ENSG00000173947 PIFO C1orf88|pitchfork primary cilia formation protein-coding 154-30 chr14 56211301 56211848 + 0.5 NA intron (NM_021255, intron 2 of 5) intron (NM_021255, intron 2 of 5) 93163 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 182.5-30 chr2 139815384 139815884 + 0.5 NA Intergenic Intergenic 771051 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 203.25-7 chr12 10327502 10328286 + 0.5 NA non-coding (NR_147040, exon 5 of 5) non-coding (NR_147040, exon 5 of 5) 10398 NR_159946 113523642 Hs.539490 NR_159946 LINC02617 - long intergenic non-protein coding RNA 2617 ncRNA 222.5-39 chr4 90645456 90646181 + 0.5 NA intron (NM_207491, intron 6 of 7) intron (NM_207491, intron 6 of 7) 410787 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 190.75-33 chr2 153014844 153015598 + 0.5 NA Intergenic AluJo|SINE|Alu 296584 NR_146430 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 151.5-102 chr8 121372511 121372988 + 0.5 NA Intergenic Intergenic -266597 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 171.5-44 chr2 52351250 52351779 + 0.5 NA intron (NR_135237, intron 9 of 10) intron (NR_135237, intron 9 of 10) -19134 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 155-110 chr8 128206252 128206751 + 0.5 NA Intergenic Intergenic 56385 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 158-61 chr4 122424558 122425023 + 0.5 NA intron (NM_001159285, intron 11 of 11) L1ME1|LINE|L1 31705 NM_000586 3558 Hs.89679 NM_000586 ENSG00000109471 IL2 IL-2|TCGF|lymphokine interleukin 2 protein-coding 169.75-76 chr9 69541659 69542149 + 0.5 NA intron (NM_001163, intron 1 of 12) (ATTTTA)n|Simple_repeat|Simple_repeat 130467 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 170.5 chr1 8834392 8834733 + 0.5 NA Intergenic AluSx3|SINE|Alu -16922 NM_012102 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 219.5-8 chr12 42831152 42831744 + 0.5 NA Intergenic Charlie15a|DNA|hAT-Charlie 139232 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 177.75-67 chr7 49104503 49105030 + 0.5 NA Intergenic (ATTTA)n|Simple_repeat|Simple_repeat 180219 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 165.75-63 chr3 107994798 107995453 + 0.5 NA Intergenic Intergenic 95963 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 155.25-57 chr3 113707067 113707589 + 0.5 NA Intergenic AluJb|SINE|Alu -10682 NR_111981 205717 Hs.632570 NM_001009899 ENSG00000176542 USF3 KIAA2018 upstream transcription factor family member 3 protein-coding 182.75-15 chr11 127385611 127386270 + 0.5 NA Intergenic Intergenic 114870 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 181-17 chr14 82854821 82855350 + 0.5 NA Intergenic Intergenic 212453 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 188.5-19 chr14 32658721 32659328 + 0.5 NA intron (NM_004274, intron 7 of 13) intron (NM_004274, intron 7 of 13) -279855 NM_173159 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 171.5-50 chr2 134403885 134404254 + 0.5 NA intron (NM_001371457, intron 12 of 16) intron (NM_001371457, intron 12 of 16) 149997 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 159.25-27 chr16 72720393 72720939 + 0.5 NA Intergenic Intergenic -55696 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 159-32 chr2 52895636 52896269 + 0.5 NA Intergenic UCON80|DNA|hAT? -193337 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 213.5-30 chr3 53886386 53886900 + 0.5 NA intron (NM_021237, intron 3 of 4) intron (NM_021237, intron 3 of 4) -4491 NM_022899 93973 Hs.412186 NM_022899 ENSG00000113812 ACTR8 ARP8|INO80N|hArp8 actin related protein 8 protein-coding 158-87 chr7 80761557 80762063 + 0.5 NA intron (NM_006379, intron 13 of 17) intron (NM_006379, intron 13 of 17) 115157 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 192.25-41 chr22 38573234 38573732 + 0.5 NA Intergenic Intergenic 2983 NR_134627 105373031 Hs.144041 NR_134627 LOC105373031 - uncharacterized LOC105373031 ncRNA 179.75-62 chr7 70783863 70784288 + 0.5 NA intron (NM_015570, intron 15 of 18) L4_B_Mam|LINE|RTE-X -348069 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 190.75-18 chr11 110922136 110922689 + 0.5 NA Intergenic L1ME3G|LINE|L1 174906 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 192.5-28 chr2 228596600 228597157 + 0.5 NA intron (NR_151716, intron 1 of 3) intron (NR_151716, intron 1 of 3) 14517 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 158.75-6 chr10 74498854 74499330 + 0.5 NA intron (NM_001369124, intron 6 of 9) AluJo|SINE|Alu 30232 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 210-23 chr2 40767335 40768071 + 0.5 NA Intergenic Intergenic -255268 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 245-13 chr2 187197407 187198147 + 0.5 NA Intergenic Intergenic 250475 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 164-53 chr3 192282687 192283179 + 0.5 NA intron (NR_046596, intron 4 of 4) intron (NR_046596, intron 4 of 4) 44303 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 161-79 chr7 7615140 7615670 + 0.5 NA Intergenic Intergenic -25347 NM_001302348 729852 Hs.652371 NM_001302348 ENSG00000219545 UMAD1 RPA3-AS1|RPA3OS UBAP1-MVB12-associated (UMA) domain containing 1 protein-coding 145.75-71 chr3 15495400 15495798 + 0.5 NA TTS (NR_036232) TTS (NR_036232) 709 NR_036232 100422868 NR_036232 ENSG00000263573 MIR4270 - microRNA 4270 ncRNA 196-19 chr14 85853352 85853961 + 0.5 NA Intergenic Intergenic -81022 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 146.5-87 chr5 82788731 82789247 + 0.5 NA Intergenic L1MB2|LINE|L1 -51166 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 152.25-50 chr2 170292849 170293260 + 0.5 NA intron (NM_001083615, intron 7 of 33) L1MA4|LINE|L1 57889 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 204.75-29 chr22 34460365 34461049 + 0.5 NA Intergenic L1MC4|LINE|L1 537209 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 174.75-44 chr4 30742502 30743035 + 0.5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 22399 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 161-15 chr11 73910249 73910643 + 0.5 NA intron (NM_001267803, intron 8 of 12) intron (NM_001267803, intron 8 of 12) 21665 NM_001363556 80227 Hs.525017 NM_025155 ENSG00000175575 PAAF1 PAAF|Rpn14|WDR71 proteasomal ATPase associated factor 1 protein-coding 186.75-8 chr10 9323306 9323754 + 0.5 NA Intergenic (ACAT)n|Simple_repeat|Simple_repeat -27937 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 177.75-81 chrX 151814383 151814893 + 0.5 NA Intergenic MER5C|DNA|hAT-Charlie 79892 NM_005140 1260 Hs.447360 NM_005140 ENSG00000183862 CNGA2 CNCA|CNCA1|CNG2|OCNC1|OCNCALPHA|OCNCa cyclic nucleotide gated channel alpha 2 protein-coding 216.75-23 chr3 174908379 174909110 + 0.5 NA intron (NM_207015, intron 1 of 13) intron (NM_207015, intron 1 of 13) 49410 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 172.25-40 chr21 25783209 25783823 + 0.5 NA Intergenic Intergenic -47862 NM_001320266 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 150.75-88 chr6 157999158 157999570 + 0.5 NA intron (NM_003898, intron 1 of 26) intron (NM_003898, intron 1 of 26) -1743 NR_046796 100874300 Hs.742238 NR_046796 ENSG00000233496 SYNJ2-IT1 - SYNJ2 intronic transcript 1 ncRNA 163.75-70 chr8 90614351 90614749 + 0.5 NA Intergenic HERV35I-int|LTR|ERV1 -8487 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 154.25-4 chr1 165478197 165478756 + 0.5 NA intron (NR_026744, intron 6 of 6) L1PB2|LINE|L1 -33121 NM_001256570 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 161.5-85 chr6 65680466 65680874 + 0.5 NA intron (NM_001292009, intron 1 of 43) intron (NM_001292009, intron 1 of 43) 26555 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 154-18 chr11 28902607 28903175 + 0.5 NA Intergenic Intergenic -425343 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 177.5-52 chr7 114224430 114224958 + 0.5 NA intron (NR_033766, intron 1 of 19) L1ME3E|LINE|L1 138367 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 175.25-43 chr3 104977766 104978329 + 0.5 NA Intergenic Intergenic -388666 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 154.75-26 chr15 79605069 79605537 + 0.5 NA Intergenic L4_C_Mam|LINE|RTE-X 172787 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 193.25-25 chr2 33713173 33713779 + 0.5 NA intron (NR_126403, intron 1 of 5) HAL1|LINE|L1 6590 NR_126403 104355287 Hs.636582 NR_126403 ENSG00000228262 LINC01317 - long intergenic non-protein coding RNA 1317 ncRNA 175.75-31 chr2 45945929 45946367 + 0.5 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 294473 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 148.75-48 chr2 115040395 115040947 + 0.5 NA intron (NM_001321910, intron 2 of 26) MSTA|LTR|ERVL-MaLR -23902 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 156.75-14 chr10 61079799 61080314 + 0.5 NA Intergenic Intergenic 63781 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 145.75-54 chr2 83107819 83108183 + 0.5 NA Intergenic L1PA13|LINE|L1 251198 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 199-40 chr8 103994906 103995415 + 0.5 NA intron (NR_145711, intron 14 of 21) intron (NR_145711, intron 14 of 21) 175940 NM_001348509 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 226.25-27 chr7 117856338 117856940 + 0.5 NA intron (NM_001363351, intron 2 of 22) intron (NM_001363351, intron 2 of 22) 15581 NM_001363349 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 199.25-43 chr3 83258632 83259220 + 0.5 NA Intergenic Intergenic 1272784 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 190-36 chr3 111038004 111038448 + 0.5 NA Intergenic L1MA4A|LINE|L1 31733 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 211.5-20 chr17 64952982 64953461 + 0.5 NA Intergenic AluSx|SINE|Alu 22364 NR_026903 201283 Hs.396447 NM_153032 ENSG00000214174 AMZ2P1 - archaelysin family metallopeptidase 2 pseudogene 1 pseudo 160.75-70 chr20 59082429 59082834 + 0.5 NA Intergenic Intergenic -39785 NR_037929 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 147.25-82 chr6 62537414 62537797 + 0.5 NA Intergenic Intergenic -251378 NM_001350622 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 183.25-31 chr16 88306804 88307421 + 0.5 NA Intergenic L1MB7|LINE|L1 112831 NR_110944 101928880 Hs.634835 NR_110944 ENSG00000260420 LINC02182 LA16c-444G7.2 long intergenic non-protein coding RNA 2182 ncRNA 199.5-41 chr4 93738009 93738577 + 0.5 NA intron (NM_001286838, intron 13 of 14) L2c|LINE|L2 -90460 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 175.75 chr1 231584547 231585071 + 0.5 NA intron (NR_028398, intron 3 of 10) AluSg|SINE|Alu 27281 NR_034037 100287814 Hs.25555 NR_034037 ENSG00000229228 LINC00582 - long intergenic non-protein coding RNA 582 ncRNA 190.25-26 chr3 39133791 39134376 + 0.5 NA intron (NR_159494, intron 20 of 28) intron (NR_159494, intron 20 of 28) -4123 NR_106880 102466743 NR_106880 ENSG00000284158 MIR6822 hsa-mir-6822 microRNA 6822 ncRNA 185.75-8 chr10 54967963 54968423 + 0.5 NA intron (NM_001354404, intron 3 of 34) L1ME1|LINE|L1 -166902 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 159.75-67 chr3 180247669 180248027 + 0.5 NA Intergenic Intergenic -166325 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 152.75-11 chr1 195843548 195844128 + 0.5 NA Intergenic L1PB|LINE|L1 244877 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 169.5-21 chr11 80234261 80234849 + 0.5 NA Intergenic L1PA13|LINE|L1 528248 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 159.5-94 chr8 63181200 63181616 + 0.5 NA intron (NR_102434, intron 3 of 3) intron (NR_102434, intron 3 of 3) 12405 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 147-22 chr12 13858297 13858735 + 0.5 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 121840 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 172.25-7 chr10 103838213 103838677 + 0.5 NA intron (NM_014631, intron 1 of 13) MIR|SINE|MIR 16961 NM_014631 9644 Hs.678727 NM_014631 ENSG00000107957 SH3PXD2A FISH|SH3MD1|TKS5 SH3 and PX domains 2A protein-coding 166.25-65 chr7 73958767 73959192 + 0.5 NA Intergenic L1MEf|LINE|L1 -68810 NM_001278918 2006 Hs.647061 NM_000501 ENSG00000049540 ELN ADCL1|SVAS|WBS|WS elastin protein-coding 164.75-63 chr4 121115691 121116195 + 0.5 NA Intergenic L2a|LINE|L2 -43408 NM_024574 79625 Hs.709520 NM_024574 ENSG00000173376 NDNF C4orf31|NORD neuron derived neurotrophic factor protein-coding 153.75-30 chr19 9076172 9076709 + 0.5 NA Intergenic AluSq2|SINE|Alu -16805 NM_001004456 125963 Hs.553577 NM_001004456 ENSG00000170929 OR1M1 OR19-5|OR19-6 olfactory receptor family 1 subfamily M member 1 protein-coding 196.75-5 chr1 219214019 219214630 + 0.5 NA Intergenic L1MEc|LINE|L1 39355 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 218-9 chr14 30958631 30959139 + 0.5 NA intron (NM_001083893, intron 1 of 17) intron (NM_001083893, intron 1 of 17) 55857 NR_030354 693209 NR_030354 ENSG00000207952 MIR624 MIRN624|hsa-mir-624|mir-624 microRNA 624 ncRNA 156-40 chr2 107437174 107437678 + 0.5 NA Intergenic A-rich|Low_complexity|Low_complexity -87901 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 192.25-57 chr7 146020691 146021450 + 0.5 NA Intergenic Intergenic -753201 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 187.25-38 chr3 2859343 2859943 + 0.5 NA intron (NM_175607, intron 7 of 24) Charlie16a|DNA|hAT-Charlie -32572 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 177.5-41 chr4 75233347 75234007 + 0.5 NA Intergenic Intergenic -120399 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 149-84 chr5 102605111 102605597 + 0.5 NA intron (NR_047462, intron 1 of 1) MIRb|SINE|MIR 23986 NR_047462 100861468 Hs.519483 NR_047462 ENSG00000250958 LINC00492 - long intergenic non-protein coding RNA 492 ncRNA 210-40 chr3 153886235 153886799 + 0.5 NA Intergenic Intergenic -123991 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 167.5-79 chr5 111130823 111131281 + 0.5 NA TTS (NM_139281) TTS (NM_139281) 38880 NM_139281 134430 Hs.533237 NM_139281 ENSG00000134987 WDR36 GLC1G|TA-WDRP|TAWDRP|UTP21 WD repeat domain 36 protein-coding 201-30 chr5 40906525 40907256 + 0.5 NA Intergenic Intergenic -2607 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 149-106 chr9 89122069 89122641 + 0.5 NA intron (NM_016848, intron 1 of 11) Ricksha|DNA|MULE-MuDR 56463 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 180.25-60 chr5 159177426 159178020 + 0.5 NA intron (NM_001199383, intron 4 of 10) L1M5|LINE|L1 29925 NM_001199382 153830 Hs.349306 NM_144726 ENSG00000145860 RNF145 - ring finger protein 145 protein-coding 158.75-37 chr19 55513293 55513878 + 0.5 NA intron (NM_001144950, intron 13 of 13) AluJb|SINE|Alu 23548 NM_001370096 646643 Hs.532676 NM_001101401 ENSG00000187550 SBK2 SGK069 SH3 domain binding kinase family member 2 protein-coding 151.75-53 chr2 201198917 201199343 + 0.5 NA intron (NM_001230, intron 5 of 7) L1MC4|LINE|L1 15989 NM_001206524 843 Hs.5353 NM_001230 ENSG00000003400 CASP10 ALPS2|FLICE2|MCH4 caspase 10 protein-coding 157-103 chr9 12134427 12134886 + 0.5 NA Intergenic L1PB4|LINE|L1 -558729 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 174.5-70 chr6 85027518 85028059 + 0.5 NA Intergenic Intergenic -263190 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 178.75-45 chr3 154109308 154109768 + 0.5 NA intron (NR_037901, intron 1 of 3) L1ME3B|LINE|L1 -11465 NM_001251962 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 166.75-64 chr4 78947029 78947546 + 0.5 NA Intergenic L1PA16|LINE|L1 -7849 NM_001350106 152559 Hs.657312 NM_177453 ENSG00000163291 PAQR3 RKTG progestin and adipoQ receptor family member 3 protein-coding 270-14 chr6 98563899 98564611 + 0.5 NA Intergenic L2a|LINE|L2 267445 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 170.5-21 chr14 78679352 78679781 + 0.5 NA intron (NR_073547, intron 6 of 20) intron (NR_073547, intron 6 of 20) 275847 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 192.5-5 chr10 61220758 61221351 + 0.5 NA Intergenic (ACAGAG)n|Simple_repeat|Simple_repeat 204779 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 169-78 chr9 77978046 77978587 + 0.5 NA intron (NM_002072, intron 1 of 6) HAL1ME|LINE|L1 53495 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 160.5-112 chr8 96917691 96918223 + 0.5 NA intron (NM_016134, intron 4 of 7) L1MC3|LINE|L1 272715 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 181.5-58 chr5 123394798 123395285 + 0.5 NA intron (NM_153223, intron 6 of 20) intron (NM_153223, intron 6 of 20) 28551 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 183.75-26 chr13 73415144 73415845 + 0.5 NA Intergenic MIRc|SINE|MIR -148750 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 176.75-42 chr2 231066101 231066511 + 0.5 NA intron (NM_001191037, intron 4 of 23) L2c|LINE|L2 9439 NM_002807 5707 Hs.3887 NM_002807 ENSG00000173692 PSMD1 P112|Rpn2|S1 proteasome 26S subunit, non-ATPase 1 protein-coding 190.25-14 chr16 84153964 84154655 + 0.5 NA intron (NM_178452, intron 3 of 11) MLT1A0|LTR|ERVL-MaLR -4731 NM_001318756 123872 Hs.310164 NM_178452 ENSG00000154099 DNAAF1 CILD13|LRRC50|ODA7|swt dynein axonemal assembly factor 1 protein-coding 154.25-43 chr2 7140803 7141347 + 0.5 NA Intergenic L1MC|LINE|L1 -63195 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 188.25-45 chr5 35655926 35656390 + 0.5 NA intron (NM_144722, intron 7 of 9) L2b|LINE|L2 38295 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 178-73 chr9 29205690 29206295 + 0.5 NA intron (NM_001354574, intron 1 of 5) L1MB8|LINE|L1 6307 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 156-6 chr1 184297142 184297486 + 0.5 NA Intergenic Intergenic -89715 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 195-4 chr1 90904668 90905415 + 0.5 NA Intergenic AluSx1|SINE|Alu 53282 NR_146610 105378854 Hs.606283 NR_146610 LINC01763 - long intergenic non-protein coding RNA 1763 ncRNA 168.5-98 chr8 118184489 118184987 + 0.5 NA intron (NR_146234, intron 4 of 5) AluSx1|SINE|Alu -72919 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 146.25-6 chr1 199995052 199995519 + 0.5 NA Intergenic Intergenic -32425 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 157.75-44 chr18 43170748 43171141 + 0.5 NA Intergenic MER61A|LTR|ERV1 -55252 NM_001272077 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 163.75-65 chr6 128711821 128712224 + 0.5 NA Intergenic Intergenic -171116 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 240.25-3 chr10 64943499 64944318 + 0.5 NA Intergenic Intergenic -19390 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 173.5-44 chr21 30077099 30077589 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 89461 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 238.75-26 chr5 109453253 109453923 + 0.5 NA Intergenic Intergenic -43614 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 163-39 chr18 12113941 12114527 + 0.5 NA intron (NM_001277333, intron 8 of 13) L1PA13|LINE|L1 20391 NM_001277333 342850 Hs.448906 NM_001277333 ENSG00000181626 ANKRD62 DKFZp779B1634 ankyrin repeat domain 62 protein-coding 175-46 chr5 170189637 170190139 + 0.5 NA Intergenic L1PB1|LINE|L1 9253 NR_108022 100507267 Hs.634846 NR_108022 LINC01187 CTB-27N1.1|KIDR long intergenic non-protein coding RNA 1187 ncRNA 226.75-22 chr3 180951284 180951910 + 0.5 NA intron (NM_005087, intron 8 of 16) intron (NM_005087, intron 8 of 16) 37921 NM_001190233 131118 Hs.230601 NM_145261 ENSG00000205981 DNAJC19 PAM18|TIM14|TIMM14 DnaJ heat shock protein family (Hsp40) member C19 protein-coding 191.75-19 chr12 60735997 60736639 + 0.5 NA Intergenic Intergenic 1046948 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 182.25-14 chr15 53345115 53345539 + 0.5 NA Intergenic L1MC3|LINE|L1 195525 NR_102336 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 204-29 chr3 174748371 174749094 + 0.5 NA Intergenic Intergenic -110602 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 152-2 chr1 40334116 40334687 + 0.5 NA Intergenic Intergenic -17115 NM_001852 1298 Hs.418012 NM_001852 ENSG00000049089 COL9A2 DJ39G22.4|EDM2|MED|STL5 collagen type IX alpha 2 chain protein-coding 145.75-122 chr8 30090874 30091266 + 0.5 NA Intergenic Intergenic -4338 NM_001128208 23484 Hs.146585 NM_015344 ENSG00000104660 LEPROTL1 HSPC112|Vps55|my047 leptin receptor overlapping transcript like 1 protein-coding 220.75-35 chr6 44200650 44201327 + 0.5 NA Intergenic Intergenic -15938 NM_001315494 101929726 Hs.438979 NM_001315494 ENSG00000262179 MYMX MINION|hMINION myomixer, myoblast fusion factor protein-coding 231.75-22 chr4 126293842 126294597 + 0.5 NA Intergenic Intergenic 786960 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 165.75-54 chr20 56594832 56595441 + 0.5 NA intron (NR_136537, intron 5 of 5) intron (NR_136537, intron 5 of 5) 17573 NR_136537 105372682 Hs.517135 NR_136537 ENSG00000225657 LINC01716 - long intergenic non-protein coding RNA 1716 ncRNA 207.75-54 chr9 102736509 102737273 + 0.5 NA Intergenic Intergenic 217254 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 172-89 chr8 135611897 135612320 + 0.5 NA intron (NM_006558, intron 7 of 8) intron (NM_006558, intron 7 of 8) 154652 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 170.5-61 chr5 148263045 148263440 + 0.5 NA Intergenic MER31-int|LTR|ERV1 -5552 NR_138538 153218 Hs.483771 NM_001040129 ENSG00000214510 SPINK13 HBVDNAPTP1|HESPINTOR|LiESP6|SPINK5L3 serine peptidase inhibitor, Kazal type 13 (putative) protein-coding 164.75-84 chr7 55659029 55659391 + 0.5 NA Intergenic Intergenic 28822 NR_027340 360132 Hs.446691 NM_182827 ENSG00000176826 FKBP9P1 FKBP9L FKBP prolyl isomerase 9 pseudogene 1 pseudo 210.5-28 chr3 25467179 25467745 + 0.5 NA intron (NR_110892, intron 2 of 6) MLT1H2|LTR|ERVL-MaLR 9152 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 173-79 chr7 92687169 92687737 + 0.5 NA intron (NM_001259, intron 4 of 7) intron (NM_001259, intron 4 of 7) -97063 NR_109929 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 150-73 chr5 17827281 17827799 + 0.5 NA intron (NR_134286, intron 2 of 7) intron (NR_134286, intron 2 of 7) 20266 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 166.75-87 chr8 13498622 13499112 + 0.5 NA intron (NM_024767, intron 2 of 4) intron (NM_024767, intron 2 of 4) 15984 NM_024767 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 153-4 chr1 213697119 213697604 + 0.5 NA Intergenic LTR16D|LTR|ERVL -227388 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 175.5-85 chr7 17325911 17326468 + 0.5 NA intron (NM_001621, intron 3 of 10) MIR|SINE|MIR 27537 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 160-50 chr21 26826151 26826777 + 0.5 NA Intergenic MSTB2|LTR|ERVL-MaLR 18945 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 152.75-104 chr8 122110166 122110604 + 0.5 NA Intergenic L1ME1|LINE|L1 458259 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 151.25-5 chr1 228546740 228547296 + 0.5 NA Intergenic HSAT4|Satellite|centr -34730 NM_001287262 100129094 Hs.730208 NM_001287262 BTNL10 BTN4|BUTR1 butyrophilin like 10 protein-coding 185-19 chr12 43833787 43834350 + 0.5 NA Intergenic AluJb|SINE|Alu -1793 NM_001286213 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 189.75 chr1 41264453 41264945 + 0.5 NA Intergenic Intergenic -22393 NM_001172218 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 146.75-71 chr3 66086003 66086395 + 0.5 NA Intergenic L1ME3G|LINE|L1 -47281 NM_015520 9223 Hs.476636 NM_004742 ENSG00000151276 MAGI1 AIP-3|AIP3|BAIAP1|BAP-1|BAP1|MAGI-1|MAGI-1b|Magi1d|TNRC19|WWP3 membrane associated guanylate kinase, WW and PDZ domain containing 1 protein-coding 153.25-50 chr19 29750456 29750966 + 0.5 NA Intergenic Intergenic -34922 NM_001256047 83636 Hs.529094 NM_031448 ENSG00000131943 C19orf12 MPAN|NBIA3|NBIA4|SPG43 chromosome 19 open reading frame 12 protein-coding 171-45 chr3 194472777 194473435 + 0.5 NA intron (NM_001367549, intron 2 of 33) L1PA16|LINE|L1 -4867 NM_024524 79572 Hs.529609 NM_024524 ENSG00000133657 ATP13A3 AFURS1 ATPase 13A3 protein-coding 151.75-71 chr4 112461793 112462160 + 0.5 NA Intergenic L1PA15|LINE|L1 -53403 NR_161159 105377372 NR_161159 LOC105377372 - uncharacterized LOC105377372 ncRNA 151-35 chr2 17084649 17085075 + 0.5 NA Intergenic L2b|LINE|L2 -419028 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 195-43 chr7 51862703 51863294 + 0.5 NA Intergenic Intergenic -469742 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 212.5-43 chr5 151061679 151062289 + 0.5 NA intron (NM_001258454, intron 4 of 17) MIR3|SINE|MIR 3147 NM_001258455 10318 Hs.355141 NM_006058 ENSG00000145901 TNIP1 ABIN-1|NAF1|VAN|nip40-1 TNFAIP3 interacting protein 1 protein-coding 201.25-36 chr4 42272597 42273373 + 0.5 NA Intergenic Intergenic 118283 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 207-54 chrX 104622956 104623480 + 0.5 NA intron (NM_017416, intron 1 of 10) intron (NM_017416, intron 1 of 10) 57019 NM_017416 26280 Hs.675519 NM_017416 ENSG00000189108 IL1RAPL2 IL-1R9|IL1R9|IL1RAPL-2|TIGIRR-1 interleukin 1 receptor accessory protein like 2 protein-coding 150.5-110 chr7 53246451 53246877 + 0.5 NA Intergenic Intergenic 211031 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 186.5-41 chr3 95561309 95561849 + 0.5 NA Intergenic Intergenic 121614 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 224.25-37 chr8 120577222 120577804 + 0.5 NA intron (NM_021021, intron 3 of 6) intron (NM_021021, intron 3 of 6) 132094 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 202.75-21 chr18 961156 961672 + 0.5 NA Intergenic Intergenic -33421 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 193-28 chr2 195776903 195777581 + 0.5 NA intron (NM_018897, intron 59 of 64) intron (NM_018897, intron 59 of 64) 120016 NM_020342 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 180.75-5 chr1 44895796 44896303 + 0.5 NA intron (NM_001166588, intron 6 of 9) intron (NM_001166588, intron 6 of 9) -52796 NM_003738 8643 Hs.591497 NM_003738 ENSG00000117425 PTCH2 PTC2 patched 2 protein-coding 156.75-29 chr12 47096435 47097003 + 0.5 NA intron (NM_138371, intron 1 of 3) intron (NM_138371, intron 1 of 3) -16760 NM_001370299 347902 Hs.121520 NM_181847 ENSG00000139211 AMIGO2 ALI1|AMIGO-2|DEGA adhesion molecule with Ig like domain 2 protein-coding 230-29 chr6 52388763 52389440 + 0.5 NA intron (NM_133367, intron 1 of 1) Tigger19a|DNA|TcMar-Tigger 26950 NM_133367 85315 Hs.239388 NM_133367 ENSG00000170915 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member 8 protein-coding 157.75-42 chr18 30696735 30697230 + 0.5 NA Intergenic L3|LINE|CR1 345760 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 170.5-69 chr7 84297228 84297697 + 0.5 NA Intergenic Intergenic -102673 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 168.25-67 chr6 65519014 65519501 + 0.5 NA intron (NM_001292009, intron 2 of 43) LTR37A|LTR|ERV1 60547 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 186.25-23 chr2 26874531 26875180 + 0.5 NA intron (NM_001253724, intron 1 of 12) L1ME1|LINE|L1 26431 NM_001253724 56896 Hs.299315 NM_020134 ENSG00000157851 DPYSL5 CRAM|CRMP-5|CRMP5|Ulip6 dihydropyrimidinase like 5 protein-coding 147.25-106 chr9 131661482 131661968 + 0.5 NA intron (NM_001304275, intron 1 of 23) intron (NM_001304275, intron 1 of 23) 48117 NM_198679 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 180.5-37 chr2 43420698 43421146 + 0.5 NA intron (NM_001083953, intron 28 of 37) intron (NM_001083953, intron 28 of 37) 175052 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 196.5-32 chr3 54865254 54865649 + 0.5 NA intron (NM_018398, intron 17 of 37) intron (NM_018398, intron 17 of 37) 35804 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 152.75-89 chr7 12648227 12648619 + 0.5 NA intron (NR_156701, intron 12 of 14) AluSg7|SINE|Alu -38404 NM_212460 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 161.5-82 chr5 163938730 163939293 + 0.5 NA Intergenic Cheshire|DNA|hAT-Charlie 433392 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 179.5-43 chr2 197495427 197496056 + 0.5 NA intron (NM_199440, intron 3 of 11) AluJo|SINE|Alu 4099 NM_002156 3329 Hs.595053 NM_002156 ENSG00000144381 HSPD1 CPN60|GROEL|HLD4|HSP-60|HSP60|HSP65|HuCHA60|SPG13 heat shock protein family D (Hsp60) member 1 protein-coding 167-47 chr2 241023684 241024068 + 0.5 NA intron (NM_001080437, intron 1 of 31) intron (NM_001080437, intron 1 of 31) 25258 NM_001080437 25992 Hs.471834 NM_001080437 ENSG00000162804 SNED1 IRE-BP1|SST3|Snep sushi, nidogen and EGF like domains 1 protein-coding 160-54 chr3 162257460 162258053 + 0.5 NA Intergenic L1PA15|LINE|L1 760948 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 182.25-46 chr5 161880851 161881480 + 0.5 NA intron (NM_000806, intron 7 of 10) intron (NM_000806, intron 7 of 10) 30440 NM_001127648 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 146.5-59 chr2 181662932 181663331 + 0.5 NA Intergenic Intergenic -6024 NM_001160277 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 154.5-85 chr7 18696359 18696702 + 0.5 NA intron (NM_058176, intron 11 of 22) AluSc|SINE|Alu 187260 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 146.75-91 chr5 116133042 116133555 + 0.5 NA intron (NM_001308080, intron 4 of 6) intron (NM_001308080, intron 4 of 6) 47836 NM_001308080 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 174-46 chr4 172148293 172148924 + 0.5 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -335001 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 157.25-34 chr16 46853953 46854464 + 0.5 NA Intergenic Intergenic -23028 NM_001001436 388272 Hs.406551 NM_001001436 ENSG00000155330 C16orf87 - chromosome 16 open reading frame 87 protein-coding 164.25-85 chr8 80268682 80269140 + 0.5 NA Intergenic MIRc|SINE|MIR 27522 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 179-47 chr4 98812048 98812577 + 0.5 NA Intergenic Intergenic 116821 NM_001130678 1977 Hs.13211 NM_001968 ENSG00000151247 EIF4E AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E eukaryotic translation initiation factor 4E protein-coding 167.75-52 chr20 24430319 24430930 + 0.5 NA Intergenic Intergenic -38575 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 159.25-25 chr15 61356092 61356555 + 0.5 NA Intergenic MIRc|SINE|MIR -127021 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 148-13 chr10 65441888 65442376 + 0.5 NA Intergenic Intergenic -129293 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 163-5 chr1 170924618 170925070 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR -10627 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 149.5-27 chr14 76352058 76352448 + 0.5 NA Intergenic MIRb|SINE|MIR -19094 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 162.75-25 chr14 43833637 43834087 + 0.5 NA Intergenic LTR16A|LTR|ERVL 673421 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 180.75-41 chr3 6901500 6902174 + 0.5 NA intron (NM_000844, intron 1 of 9) (TTATATT)n|Simple_repeat|Simple_repeat -7820 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 171-39 chr3 25452040 25452655 + 0.5 NA intron (NR_110892, intron 1 of 6) intron (NR_110892, intron 1 of 6) -5963 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 153.5-107 chr8 87860473 87861048 + 0.5 NA Intergenic Intergenic 13255 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 181.75-21 chr12 91756252 91756872 + 0.5 NA Intergenic L1MC5a|LINE|L1 385151 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 152-29 chr17 67934262 67934591 + 0.5 NA intron (NM_182641, intron 18 of 27) AluSq|SINE|Alu 59180 NM_181656 284018 Hs.90790 NM_181655 ENSG00000186665 C17orf58 - chromosome 17 open reading frame 58 protein-coding 146.5-29 chr14 73760324 73760699 + 0.5 NA promoter-TSS (NM_194278) promoter-TSS (NM_194278) -208 NM_001367710 91748 Hs.594157 NM_194278 ENSG00000156030 ELMSAN1 C14orf117|C14orf43|LSR68|MIDEAS|c14_5541 ELM2 and Myb/SANT domain containing 1 protein-coding 156-23 chr14 49969468 49970047 + 0.5 NA Intergenic AluSx|SINE|Alu 3358 NR_106724 102464828 NR_106724 ENSG00000278038 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 210.5-27 chr3 4210055 4210568 + 0.5 NA Intergenic L1M5|LINE|L1 -92993 NM_001320677 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 177.75-36 chr2 240109470 240110053 + 0.5 NA Intergenic Intergenic 26544 NM_001163424 150678 Hs.293884 NM_138336 ENSG00000172428 COPS9 CSNAP|MYEOV2 COP9 signalosome subunit 9 protein-coding 216.75-32 chr7 113583286 113583994 + 0.5 NA Intergenic Intergenic 335369 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 162.75-59 chr5 16209354 16209934 + 0.5 NA Intergenic Intergenic 29403 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 200.25-20 chr15 78691509 78692203 + 0.5 NA Intergenic Intergenic -50646 NM_001256567 1143 Hs.624178 NM_000750 ENSG00000117971 CHRNB4 - cholinergic receptor nicotinic beta 4 subunit protein-coding 197.5-63 chrX 73936690 73937314 + 0.5 NA Intergenic MER2|DNA|TcMar-Tigger -7322 NR_024582 554203 Hs.648316 NR_024582 ENSG00000225470 JPX DCBALD06|ENOX|LINC00183|NCRNA00183 JPX transcript, XIST activator ncRNA 215.75-7 chr12 29483273 29483818 + 0.5 NA intron (NM_001353179, intron 9 of 25) intron (NM_001353179, intron 9 of 25) 16148 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 170.5-18 chr14 54177852 54178253 + 0.5 NA Intergenic Intergenic -218816 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 148.5-91 chr7 90001402 90001724 + 0.5 NA intron (NR_110029, intron 2 of 2) L1MC5a|LINE|L1 -117837 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 149-24 chr14 55206467 55206825 + 0.5 NA Intergenic Intergenic -15061 NM_001146015 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 157-37 chr15 87112802 87113385 + 0.5 NA Intergenic L1MC3|LINE|L1 -124667 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 188.25-65 chr8 129246560 129247017 + 0.5 NA Intergenic Intergenic -5548 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 178-62 chr7 49322253 49322840 + 0.5 NA Intergenic Intergenic 397999 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 211.25-32 chr4 70483991 70484821 + 0.5 NA Intergenic Intergenic 12209 NM_152291 4589 Hs.631946 NM_152291 ENSG00000171195 MUC7 MG2 mucin 7, secreted protein-coding 164-8 chr10 121841187 121841673 + 0.5 NA intron (NM_001001976, intron 8 of 11) intron (NM_001001976, intron 8 of 11) 86601 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 156.25-100 chr8 134915748 134916185 + 0.5 NA Intergenic Intergenic 66031 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 160.75-22 chr11 100765340 100765971 + 0.5 NA intron (NM_001367945, intron 1 of 25) L2b|LINE|L2 -77700 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 200.75-16 chr14 51941661 51942357 + 0.5 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) -23438 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 156-14 chr11 121002934 121003446 + 0.5 NA Intergenic L4_A_Mam|LINE|RTE-X -20882 NM_001363644 219899 Hs.504136 NM_152715 ENSG00000154114 TBCEL El|LRRC35 tubulin folding cofactor E like protein-coding 185.25-47 chr2 169487894 169488423 + 0.5 NA intron (NM_152384, intron 5 of 11) intron (NM_152384, intron 5 of 11) 8664 NM_152384 129880 Hs.233398 NM_152384 ENSG00000163093 BBS5 - Bardet-Biedl syndrome 5 protein-coding 242.25-16 chr6 76354408 76355362 + 0.5 NA Intergenic Intergenic 238738 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 164.25-51 chr20 33104867 33105393 + 0.5 NA intron (NM_182519, intron 14 of 15) intron (NM_182519, intron 14 of 15) 23618 NM_182519 149954 Hs.38961 NM_182519 ENSG00000186191 BPIFB4 C20orf186|LPLUNC4|RY2G5|dJ726C3.5 BPI fold containing family B member 4 protein-coding 177.5-50 chr7 52481301 52481700 + 0.5 NA Intergenic Intergenic -554133 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 159.25-59 chr4 85107353 85107809 + 0.5 NA Intergenic MLT1H1|LTR|ERVL-MaLR 140097 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 169.5-53 chr3 32297431 32297831 + 0.5 NA intron (NM_001320308, intron 1 of 2) intron (NM_001320308, intron 1 of 2) 58951 NM_178868 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 149.5-103 chrX 51437402 51437912 + 0.5 NA Intergenic Intergenic 30709 NM_203407 340602 Hs.97053 NM_203407 ENSG00000187690 EZHIP CXorf67 EZH inhibitory protein protein-coding 165.5-105 chrX 45619736 45620253 + 0.5 NA Intergenic Intergenic -111094 NR_102268 392452 Hs.745266 NR_102268 LOC392452 - mitochondrial fission factor pseudogene pseudo 174.25-23 chr16 66980171 66980846 + 0.5 NA Intergenic L1M4b|LINE|L1 -8081 NM_001364782 283848 Hs.346947 NM_173815 ENSG00000172824 CES4A CES6|CES8 carboxylesterase 4A protein-coding 208.5-61 chr8 131124341 131124984 + 0.5 NA Intergenic Intergenic -83753 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 182.25-6 chr10 64501923 64502536 + 0.5 NA Intergenic Intergenic -323299 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 185.25-5 chr1 189303262 189303675 + 0.5 NA Intergenic Intergenic 1172542 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 152-92 chr8 26257432 26257968 + 0.5 NA Intergenic Intergenic -33808 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 153.25-88 chr4 135057075 135057598 + 0.5 NA Intergenic Intergenic 66223 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 179.75-32 chr3 2753398 2753958 + 0.5 NA intron (NM_175607, intron 6 of 24) intron (NM_175607, intron 6 of 24) -138537 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 151.75-66 chr4 33317900 33318341 + 0.5 NA Intergenic Intergenic 721773 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 196-15 chr14 28208498 28208983 + 0.5 NA Intergenic Intergenic -535519 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 244.25-5 chr11 26811824 26812612 + 0.5 NA Intergenic Intergenic -90158 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 152-89 chr7 64630905 64631329 + 0.5 NA Intergenic BSR/Beta|Satellite|Satellite -34966 NM_001282359 51427 Hs.50216 NM_016220 ENSG00000196247 ZNF107 Y8|ZFD25|ZNF588|smap-7 zinc finger protein 107 protein-coding 191-21 chr13 94420991 94421751 + 0.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR 58311 NM_001129889 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 182.75-50 chr4 115615455 115615915 + 0.5 NA Intergenic Intergenic -502065 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 162.75-90 chr8 137181187 137181725 + 0.5 NA Intergenic Intergenic 232132 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 186.75-80 chr8 79360946 79361524 + 0.5 NA Intergenic Intergenic 29047 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 173-56 chr4 46454280 46454818 + 0.5 NA Intergenic Intergenic -64421 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 172.5-38 chr2 194137667 194138075 + 0.5 NA Intergenic Intergenic -206398 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 152.5-115 chrX 63620881 63621396 + 0.5 NA Intergenic L1MC3|LINE|L1 50364 NR_138419 100874355 Hs.671524 NR_138419 ENSG00000231729 ARHGEF9-IT1 - ARHGEF9 intronic transcript 1 ncRNA 202.5-46 chr4 61476891 61477483 + 0.5 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 275015 NM_001371342 249.25-12 chr4 37426291 37427273 + 0.5 NA intron (NM_001144990, intron 3 of 6) MER5A|DNA|hAT-Charlie -27143 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 148-77 chr5 154547449 154547969 + 0.5 NA Intergenic Intergenic 48363 NR_036094 100422950 NR_036094 ENSG00000264760 MIR3141 mir-3141 microRNA 3141 ncRNA 150.25-4 chr1 71315724 71316106 + 0.5 NA Intergenic Intergenic 234591 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 167.75-10 chr10 106255773 106256288 + 0.5 NA Intergenic Intergenic 115865 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 190.75-23 chr14 53404670 53405428 + 0.5 NA Intergenic Intergenic 251695 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 167.25-67 chr6 23404374 23404965 + 0.5 NA Intergenic Intergenic -686745 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 151.5-2 chr1 66033624 66034104 + 0.5 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) 16854 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 188.75-65 chr8 105027663 105028047 + 0.5 NA Intergenic Intergenic -290583 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 305.75-8 chr8 125764312 125765233 + 0.5 NA Intergenic L1MA4|LINE|L1 186425 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 147.75-51 chr2 30085997 30086557 + 0.5 NA Intergenic Intergenic -60730 NM_016061 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 182.5-81 chr8 137198798 137199299 + 0.5 NA Intergenic MLT2B1|LTR|ERVL 214540 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 163.5-37 chr15 70248825 70249283 + 0.5 NA Intergenic Intergenic -151137 NM_020908 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 170.5-71 chr7 99113494 99113970 + 0.5 NA intron (NM_020429, intron 1 of 18) AluY|SINE|Alu 30376 NM_001199847 57154 Hs.189329 NM_020429 ENSG00000198742 SMURF1 - SMAD specific E3 ubiquitin protein ligase 1 protein-coding 145.75-88 chr4 121512463 121512919 + 0.5 NA Intergenic MLT2A1|LTR|ERVL -131673 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 189.5-68 chr8 69106679 69107268 + 0.5 NA Intergenic Intergenic -2783 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 205-8 chr11 54961223 54961987 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 254773 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 188-59 chr9 85345155 85345569 + 0.5 NA Intergenic Intergenic 396667 NM_015239 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 145.75-5 chr1 173139211 173139618 + 0.5 NA Intergenic Intergenic 66118 NM_001297562 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 163-51 chr2 196434791 196435382 + 0.5 NA intron (NM_001348768, intron 1 of 28) intron (NM_001348768, intron 1 of 28) -72909 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 227.5-16 chr4 35249007 35249630 + 0.5 NA Intergenic Intergenic -979571 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 157-35 chr15 64512640 64513186 + 0.5 NA intron (NM_015042, intron 1 of 8) L1PA15|LINE|L1 13493 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 165-32 chr16 48050706 48051195 + 0.5 NA Intergenic MER51B|LTR|ERV1 85261 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 292.5-6 chr4 66341340 66342282 + 0.5 NA Intergenic AluJr4|SINE|Alu 64987 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 224.75-21 chr2 115853321 115853934 + 0.5 NA Intergenic L1MB8|LINE|L1 509812 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 182-48 chr5 127286543 127287190 + 0.5 NA Intergenic L1ME2|LINE|L1 -3898 NM_001308121 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 192.75-63 chr8 75823899 75824496 + 0.5 NA Intergenic Intergenic 284229 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 168.25-12 chr12 69659184 69659596 + 0.5 NA intron (NM_001282613, intron 7 of 7) AluJr|SINE|Alu 29887 NR_104220 144453 Hs.280782 NM_032735 ENSG00000127325 BEST3 VMD2L3 bestrophin 3 protein-coding 168.5-21 chr12 127437787 127438294 + 0.5 NA Intergenic L1MD2|LINE|L1 -97968 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 207.5-23 chr2 74583472 74584003 + 0.5 NA intron (NM_001321739, intron 4 of 10) intron (NM_001321739, intron 4 of 10) 29577 NM_001318866 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 157-104 chr9 96058207 96058560 + 0.5 NA Intergenic L1MB7|LINE|L1 -7456 NR_033838 158435 Hs.652615 NR_033838 LOC158435 - uncharacterized LOC158435 ncRNA 158.25-89 chr5 89449253 89449769 + 0.5 NA intron (NR_136221, intron 5 of 6) intron (NR_136221, intron 5 of 6) -545406 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 163.5-122 chrX 44288126 44288516 + 0.5 NA intron (NM_025184, intron 2 of 14) intron (NM_025184, intron 2 of 14) 55351 NM_025184 80258 Hs.521953 NM_025184 ENSG00000183690 EFHC2 MRX74|dJ1158H2.1 EF-hand domain containing 2 protein-coding 157.25-55 chr2 189067049 189067424 + 0.5 NA intron (NM_000393, intron 21 of 53) intron (NM_000393, intron 21 of 53) 65875 NR_036076 100422908 NR_036076 ENSG00000264725 MIR3129 mir-3129 microRNA 3129 ncRNA 214.25-17 chr2 76323594 76324098 + 0.5 NA Intergenic Intergenic -612931 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 188.5-55 chr5 124890649 124891362 + 0.5 NA Intergenic Intergenic -145826 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 153.25-106 chr7 27781355 27781696 + 0.5 NA intron (NM_001362794, intron 5 of 16) Tigger3|DNA|TcMar-Tigger 41430 NM_001206902 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 156.5-116 chr9 92768074 92768646 + 0.5 NA Intergenic LTR1D|LTR|ERV1 -3527 NM_015250 23299 Hs.436939 NM_015250 ENSG00000185963 BICD2 SMALED2|SMALED2A|SMALED2B|bA526D8.1 BICD cargo adaptor 2 protein-coding 183-49 chr7 79882982 79883558 + 0.5 NA Intergenic L1ME1|LINE|L1 -251561 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 210.75-26 chr18 60995188 60995716 + 0.5 NA Intergenic AluSq2|SINE|Alu -337978 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 170.25-54 chr4 111751204 111751747 + 0.5 NA Intergenic L2|LINE|L2 -393979 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 234-6 chr14 60066944 60067598 + 0.5 NA Intergenic Intergenic -24640 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 221.75-26 chr3 196361201 196362008 + 0.5 NA intron (NM_015562, intron 10 of 10) Tigger1|DNA|TcMar-Tigger -23184 NR_037950 100534611 Hs.733180 NR_037950 TM4SF19-TCTEX1D2 - TM4SF19-TCTEX1D2 readthrough (NMD candidate) ncRNA 193.75-35 chr2 51632955 51633521 + 0.5 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 600637 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 153.5-116 chr8 144186936 144187384 + 0.5 NA intron (NM_001099281, intron 6 of 11) AluJr|SINE|Alu 38515 NM_001288814 727957 Hs.443139 NM_032450 ENSG00000179832 MROH1 HEATR7A maestro heat like repeat family member 1 protein-coding 219.75-42 chr8 59221026 59221635 + 0.5 NA Intergenic L1MEc|LINE|L1 102120 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 167.75-19 chr12 73597686 73598273 + 0.5 NA Intergenic Intergenic 438789 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 146.5-49 chr2 68485744 68486252 + 0.5 NA intron (NM_173545, intron 1 of 9) AluJb|SINE|Alu 18413 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 179-10 chr12 75324852 75325332 + 0.5 NA intron (NM_001355027, intron 3 of 16) L1ME4c|LINE|L1 5232 NM_001286547 84698 Hs.733835 NM_032606 ENSG00000180881 CAPS2 UG0636c06 calcyphosine 2 protein-coding 261-2 chr1 49429919 49430779 + 0.5 NA intron (NR_046839, intron 2 of 3) L2c|LINE|L2 41736 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 155.75-10 chr1 239286537 239286909 + 0.5 NA Intergenic Intergenic -99845 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 222.25-22 chr20 54857453 54857953 + 0.5 NA Intergenic LTR37A|LTR|ERV1 382110 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 158-81 chr6 161877985 161878440 + 0.5 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 407235 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 156.25-70 chr5 52165396 52165791 + 0.5 NA Intergenic L2a|LINE|L2 157562 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 162.25-30 chr2 58466194 58466824 + 0.5 NA Intergenic Intergenic -54244 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 156.75-28 chr12 46554186 46554573 + 0.5 NA intron (NR_125380, intron 3 of 3) intron (NR_125380, intron 3 of 3) 170272 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 193.5-72 chr8 32806668 32807133 + 0.5 NA Intergenic MLT2A1|LTR|ERVL 85065 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 166.5-5 chr10 18667004 18667480 + 0.5 NA intron (NM_178815, intron 2 of 5) intron (NM_178815, intron 2 of 5) 7811 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 156-101 chrX 54375923 54376455 + 0.5 NA Intergenic AluJo|SINE|Alu -18143 NM_001002838 65267 Hs.92423 NM_020922 ENSG00000196632 WNK3 PRKWNK3 WNK lysine deficient protein kinase 3 protein-coding 154.5-32 chr15 63574359 63574785 + 0.5 NA intron (NM_001256702, intron 10 of 13) intron (NM_001256702, intron 10 of 13) -22815 NM_001367809 283807 Hs.631163 NM_203373 ENSG00000197361 FBXL22 Fbl22 F-box and leucine rich repeat protein 22 protein-coding 192.75-27 chr2 16443576 16444025 + 0.5 NA Intergenic MLT1A|LTR|ERVL-MaLR 222034 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 173.25-51 chr3 132670067 132670492 + 0.5 NA exon (NM_001321239, exon 3 of 10) exon (NM_001321239, exon 3 of 10) 9582 NM_001320210 79876 Hs.170737 NM_024818 ENSG00000081307 UBA5 EIEE44|SCAR24|THIFP1|UBE1DC1 ubiquitin like modifier activating enzyme 5 protein-coding 219.25-38 chr5 57295854 57296488 + 0.5 NA Intergenic MER50|LTR|ERV1 82097 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 147.25-65 chr4 66200782 66201223 + 0.5 NA Intergenic Intergenic -75822 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 157.75-13 chr10 24213645 24214114 + 0.5 NA intron (NM_019590, intron 1 of 20) intron (NM_019590, intron 1 of 20) 4741 NM_019590 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 184.5-60 chr5 34774271 34774787 + 0.5 NA intron (NM_015577, intron 3 of 17) L1M1|LINE|L1 -64635 NM_144725 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 210.75-40 chr7 32187501 32188152 + 0.5 NA intron (NM_001322059, intron 2 of 17) MER33|DNA|hAT-Charlie 111502 NM_001191058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 159-67 chr5 121846113 121846736 + 0.5 NA Intergenic AluJr|SINE|Alu -5458 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 193.25-43 chr4 31293176 31293732 + 0.5 NA Intergenic Intergenic 122310 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 198.5-24 chr17 26811618 26812246 + 0.5 NA Intergenic Intergenic 277309 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 187.75-55 chr5 4192810 4193514 + 0.5 NA Intergenic MIRb|SINE|MIR -580319 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 171.5-9 chr1 187878469 187878995 + 0.5 NA Intergenic Intergenic 435104 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 170.5-34 chr2 65211518 65212161 + 0.5 NA Intergenic Intergenic -15856 NM_005722 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 206.5-48 chr8 47874209 47874647 + 0.5 NA intron (NM_001081640, intron 40 of 84) L1MA3|LINE|L1 85708 NM_001081640 5591 Hs.491682 NM_006904 ENSG00000253729 PRKDC DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350 protein kinase, DNA-activated, catalytic subunit protein-coding 178.25-10 chr12 10692237 10692849 + 0.5 NA Intergenic Intergenic -18491 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 153-12 chr11 124287126 124287660 + 0.5 NA Intergenic L1MC|LINE|L1 22566 NM_001005198 219865 Hs.722725 NM_001005198 ENSG00000255298 OR8G5 OR11-298|OR8G5P|OR8G6 olfactory receptor family 8 subfamily G member 5 protein-coding 148-27 chr14 48033656 48033990 + 0.5 NA Intergenic L1PA8A|LINE|L1 -238809 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 189.75-64 chr6 52422633 52423332 + 0.5 NA intron (NM_001172420, intron 1 of 11) intron (NM_001172420, intron 1 of 11) 1974 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 199.25-39 chr20 59950812 59951311 + 0.5 NA Intergenic THE1C|LTR|ERVL-MaLR -7335 NR_145482 60437 Hs.729046 NM_021810 ENSG00000124215 CDH26 VR20 cadherin 26 protein-coding 155.5-3 chr1 74113467 74113990 + 0.5 NA intron (NM_001105659, intron 4 of 7) L1M4b|LINE|L1 84448 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 204-43 chr8 116321753 116322338 + 0.5 NA intron (NR_046215, intron 1 of 13) intron (NR_046215, intron 1 of 13) 3014 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 149.25-85 chr5 54115914 54116395 + 0.5 NA intron (NM_019087, intron 3 of 4) LTR16A1|LTR|ERVL -164555 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 149-34 chr2 6499359 6499781 + 0.5 NA Intergenic Intergenic -124148 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 216.75-36 chr8 141303206 141303987 + 0.5 NA Intergenic Intergenic -36953 NR_024441 731779 Hs.586414 NR_024441 ENSG00000253595 LINC01300 - long intergenic non-protein coding RNA 1300 ncRNA 151.75-110 chr8 128187170 128187612 + 0.5 NA Intergenic Intergenic 37275 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 171.5-83 chr5 117740127 117740765 + 0.5 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 10085 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 179.5-24 chr14 92169741 92170254 + 0.5 NA 3' UTR (NM_017437, exon 16 of 16) 3' UTR (NM_017437, exon 16 of 16) 48028 NM_001322272 53981 Hs.657632 NM_017437 ENSG00000165934 CPSF2 CPSF100 cleavage and polyadenylation specific factor 2 protein-coding 148.5-42 chr2 57973109 57973615 + 0.5 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) 65711 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 186-2 chr1 105101849 105102549 + 0.5 NA Intergenic Intergenic 516736 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 174.5-57 chr4 48204422 48204980 + 0.5 NA intron (NM_003215, intron 2 of 17) MER1B|DNA|hAT-Charlie 65137 NM_003215 7006 Hs.479670 NM_003215 ENSG00000135605 TEC PSCTK4 tec protein tyrosine kinase protein-coding 152.75-2 chr1 36901431 36901872 + 0.5 NA intron (NM_000831, intron 1 of 15) L1MC1|LINE|L1 132864 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 171-9 chr10 91251438 91252068 + 0.5 NA intron (NM_001256549, intron 6 of 9) intron (NM_001256549, intron 6 of 9) 31090 NM_032373 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 146.75-20 chr11 43558301 43558697 + 0.5 NA Intergenic Intergenic -1157 NR_031577 100313777 NR_031577 ENSG00000211568 MIR670 hsa-mir-670 microRNA 670 ncRNA 203.5-39 chr3 17224322 17224867 + 0.5 NA intron (NM_014744, intron 17 of 21) intron (NM_014744, intron 17 of 21) 291398 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 173.25-50 chr3 116934105 116934629 + 0.5 NA Intergenic AluSx1|SINE|Alu 12936 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 182.75-41 chr21 28587084 28587524 + 0.5 NA Intergenic Intergenic 47986 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 179.75-53 chr6 103453992 103454699 + 0.5 NA Intergenic L1PA5|LINE|L1 1405201 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 190-63 chr7 26838538 26839043 + 0.5 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 18933 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 168.25-76 chr8 64316135 64316567 + 0.5 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 52207 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 231.25-3 chr1 92840564 92841259 + 0.5 NA TTS (NR_002444) TTS (NR_002444) 192 NR_002444 26782 Hs.180946 NR_002444 ENSG00000207523 SNORA66 RNU66|U66 small nucleolar RNA, H/ACA box 66 snoRNA 155.75-3 chr1 70396636 70397043 + 0.5 NA Intergenic Intergenic -14379 NM_001190463 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 182.75-46 chr4 43479690 43480108 + 0.5 NA intron (NR_146993, intron 1 of 2) intron (NR_146993, intron 1 of 2) 12644 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 221.5-4 chr1 162283654 162284205 + 0.5 NA intron (NM_014697, intron 2 of 9) intron (NM_014697, intron 2 of 9) -58617 NR_030283 693141 NR_030283 ENSG00000207729 MIR556 MIRN556|hsa-mir-556|mir-556 microRNA 556 ncRNA 146.75-120 chr8 121390316 121390769 + 0.5 NA Intergenic Intergenic -248804 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 200-16 chr12 91838814 91839428 + 0.5 NA Intergenic MER57A-int|LTR|ERV1 302592 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 145.75-44 chr18 29991266 29991614 + 0.5 NA Intergenic L3|LINE|CR1 -307470 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 149.75-91 chr7 33914641 33915066 + 0.5 NA intron (NM_133468, intron 3 of 15) L2b|LINE|L2 9314 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 191.5-49 chr5 117940668 117941212 + 0.5 NA intron (NR_104997, intron 2 of 2) MLT1N2|LTR|ERVL-MaLR 210579 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 187.5-35 chr2 104235844 104236275 + 0.5 NA Intergenic CR1_Mam|LINE|CR1 172273 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 157.75-114 chr9 74672391 74672856 + 0.5 NA intron (NM_006914, intron 9 of 9) intron (NM_006914, intron 9 of 9) 57089 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 246.5-9 chr17 58982969 58983604 + 0.5 NA non-coding (NR_048561, exon 6 of 6) non-coding (NR_048561, exon 6 of 6) 123594 NM_001353085 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 167.25-57 chr4 156220380 156220868 + 0.5 NA Intergenic Intergenic -266758 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 156.75-17 chr10 88755067 88755616 + 0.5 NA Intergenic Tigger4b|DNA|TcMar-Tigger -6065 NM_001102469 643418 Hs.632091 NM_001102469 ENSG00000204020 LIPN ARCI8|LI4|LIPL4|bA186O14.3 lipase family member N protein-coding 159.5-41 chr2 40055250 40055697 + 0.5 NA intron (NR_038441, intron 2 of 4) L1MA9|LINE|L1 137839 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 185-40 chr2 209627301 209627703 + 0.5 NA intron (NM_001039538, intron 4 of 14) MIRb|SINE|MIR 47823 NM_031845 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 217.25-12 chr11 6206255 6206748 + 0.5 NA intron (NM_173525, intron 1 of 2) intron (NM_173525, intron 1 of 2) 944 NM_173525 160298 Hs.278221 NM_173525 ENSG00000180878 C11orf42 - chromosome 11 open reading frame 42 protein-coding 188.25-36 chr4 57713156 57713767 + 0.5 NA Intergenic L1PBa|LINE|L1 287589 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 153-14 chr12 44753230 44753762 + 0.5 NA intron (NM_006159, intron 10 of 20) intron (NM_006159, intron 10 of 20) 122165 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 159.5-54 chr3 88376856 88377433 + 0.5 NA intron (NM_001368167, intron 2 of 2) L2|LINE|L2 38688 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 167.75-34 chr15 65382271 65382739 + 0.5 NA 3' UTR (NM_020962, exon 20 of 20) 3' UTR (NM_020962, exon 20 of 20) -4503 NM_004884 9543 Hs.128292 NM_004884 ENSG00000174498 IGDCC3 HsT18880|PUNC immunoglobulin superfamily DCC subclass member 3 protein-coding 178-41 chr21 21011049 21011556 + 0.5 NA intron (NM_001352595, intron 1 of 14) MIRb|SINE|MIR 12893 NM_004540 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 170-55 chr7 8765398 8766038 + 0.5 NA Intergenic Intergenic 332109 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 172.75-35 chr2 114086880 114087366 + 0.5 NA Intergenic MIRc|SINE|MIR -107139 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 162.5-71 chr5 61172825 61173367 + 0.5 NA intron (NR_109908, intron 1 of 3) ERV3-16A3_I-int|LTR|ERVL -10628 NM_001048249 643155 Hs.508479 NM_001048249 ENSG00000188725 SMIM15 C5orf43 small integral membrane protein 15 protein-coding 184-10 chr11 27653282 27653695 + 0.5 NA intron (NR_033314, intron 4 of 6) intron (NR_033314, intron 4 of 6) 6161 NM_170735 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 148.5-38 chr19 43714641 43715052 + 0.5 NA Intergenic Intergenic -1230 NM_019612 56269 Hs.515444 NM_019612 ENSG00000124449 IRGC CINEMA|IFGGE|IRGC1|Iigp5|R30953_1 immunity related GTPase cinema protein-coding 206.75-52 chr8 78071681 78072267 + 0.5 NA Intergenic LTR9D|LTR|ERV1 -444366 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 153.75-69 chr5 124697698 124698238 + 0.5 NA intron (NM_020747, intron 2 of 8) intron (NM_020747, intron 2 of 8) 47144 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 209.5-47 chr7 117804104 117804665 + 0.5 NA intron (NM_001363351, intron 3 of 22) L1MC4|LINE|L1 67836 NM_001363349 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 149-14 chr12 29928045 29928565 + 0.5 NA Intergenic Intergenic -143546 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 177.25-71 chr7 112786312 112786992 + 0.5 NA intron (NM_022484, intron 1 of 4) intron (NM_022484, intron 1 of 4) 3741 NM_022484 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 172.5-15 chr12 6417884 6418352 + 0.5 NA Intergenic L1ME2|LINE|L1 -26767 NM_001242 939 Hs.355307 NM_001242 ENSG00000139193 CD27 S152|S152. LPFS2|T14|TNFRSF7|Tp55 CD27 molecule protein-coding 160.75-36 chr15 25522529 25522961 + 0.5 NA Intergenic L1MC4|LINE|L1 -83689 NM_130839 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 181.75-20 chr12 79780612 79781055 + 0.5 NA intron (NM_001244990, intron 23 of 24) intron (NM_001244990, intron 23 of 24) -89736 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 160.5-118 chr9 28534545 28535030 + 0.5 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 184518 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 168-65 chr8 84816151 84816597 + 0.5 NA intron (NM_001287244, intron 3 of 7) intron (NM_001287244, intron 3 of 7) 110447 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 172.75-77 chrX 57672035 57672560 + 0.5 NA Intergenic MER51-int|LTR|ERV1 7963 NM_001319967 286430 Hs.306842 NM_001319967 ENSG00000215174 NLRP2B CLRX.1|NALP2P|NLRP2P|NOD24|POP4 NLR family pyrin domain containing 2B protein-coding 217.75-29 chr3 152806086 152806745 + 0.5 NA Intergenic Intergenic -28716 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 167-6 chr1 190938491 190939060 + 0.5 NA Intergenic Intergenic 289723 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 210.25-7 chr11 23201470 23201960 + 0.5 NA Intergenic Intergenic 217475 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 243.25-26 chr6 53289755 53290711 + 0.5 NA intron (NM_001242828, intron 3 of 8) intron (NM_001242828, intron 3 of 8) 13240 NR_049866 100847075 NR_049866 ENSG00000264056 MIR5685 - microRNA 5685 ncRNA 168-13 chr10 72618358 72618704 + 0.5 NA intron (NM_006077, intron 1 of 11) intron (NM_006077, intron 1 of 11) 7548 NM_001195518 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 221-32 chr7 96149904 96150653 + 0.5 NA intron (NM_001160210, intron 13 of 17) intron (NM_001160210, intron 13 of 17) 69478 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 174.75-71 chr8 134799149 134799591 + 0.5 NA Intergenic Intergenic 1237 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 148.25-104 chrX 68250247 68250619 + 0.5 NA intron (NM_002547, intron 5 of 24) MIRb|SINE|MIR 183062 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 301.75-9 chr5 25056736 25057375 + 0.5 NA Intergenic MER57C2|LTR|ERV1 133601 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 163.25-71 chr7 75533660 75533986 + 0.5 NA 3' UTR (NM_001243198, exon 29 of 29) 3' UTR (NM_001243198, exon 29 of 29) -5700 NR_028059 5387 Hs.659871 NM_005395 ENSG00000127957 PMS2P3 PMS2L3|PMS2L9|PMS5|PMSR3 PMS1 homolog 2, mismatch repair system component pseudogene 3 pseudo 272-15 chr7 20829612 20830652 + 0.5 NA Intergenic LTR18B|LTR|ERVL 2834 NR_026673 222901 Hs.722187 NR_026673 ENSG00000219451 RPL23P8 RPL23_4_790 ribosomal protein L23 pseudogene 8 pseudo 180.75-40 chr22 28622696 28623283 + 0.5 NA intron (NM_001145418, intron 2 of 22) AluSx1|SINE|Alu 56876 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 146.5-70 chr3 131889758 131890206 + 0.5 NA intron (NM_130808, intron 2 of 15) L1MA10|LINE|L1 95949 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 154.25-16 chr10 103223311 103223907 + 0.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR -22278 NM_001143909 729020 Hs.458437 NM_001143909 ENSG00000235376 RPEL1 - ribulose-5-phosphate-3-epimerase like 1 protein-coding 158.25-106 chr7 104612794 104613398 + 0.5 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 190996 NR_034142 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 163.5-26 chr14 56626828 56627332 + 0.5 NA intron (NM_017799, intron 12 of 15) L1ME4a|LINE|L1 47282 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 181.75-62 chr8 27974328 27974876 + 0.5 NA intron (NM_173833, intron 2 of 8) intron (NM_173833, intron 2 of 8) 18071 NM_173833 286133 Hs.591833 NM_173833 ENSG00000168079 SCARA5 NET33|Tesr scavenger receptor class A member 5 protein-coding 189.75-56 chr5 2357916 2358375 + 0.5 NA Intergenic MIR|SINE|MIR -45944 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 153.5-110 chr8 109809515 109810066 + 0.5 NA Intergenic MIRb|SINE|MIR -117999 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 165.5-21 chr12 18646126 18646694 + 0.5 NA intron (NM_001288774, intron 32 of 32) intron (NM_001288774, intron 32 of 32) 91099 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 172.5-65 chr5 152737576 152738179 + 0.5 NA intron (NR_109877, intron 3 of 4) L1MB7|LINE|L1 234472 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 192.5-51 chr6 43762376 43762955 + 0.5 NA Intergenic MIRc|SINE|MIR -7544 NM_001171629 7422 Hs.73793 NM_003376 ENSG00000112715 VEGFA MVCD1|VEGF|VPF vascular endothelial growth factor A protein-coding 163-52 chr2 214391199 214391819 + 0.5 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -19545 NR_159945 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 162.75-22 chr12 102788404 102788850 + 0.5 NA Intergenic Charlie1a|DNA|hAT-Charlie 35772 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 161.5-27 chr12 21850607 21851023 + 0.5 NA intron (NM_005691, intron 22 of 37) intron (NM_005691, intron 22 of 37) -76109 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 158.25-69 chr3 153438560 153439045 + 0.5 NA intron (NR_146713, intron 5 of 6) intron (NR_146713, intron 5 of 6) -45693 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 162.25-48 chr21 30736040 30736594 + 0.5 NA Intergenic Intergenic 10942 NM_181617 337978 Hs.553699 NM_181617 ENSG00000187026 KRTAP21-2 KAP21.2 keratin associated protein 21-2 protein-coding 152.25-20 chr12 42298343 42298693 + 0.5 NA Intergenic L1MEg|LINE|L1 25341 NR_107005 102467003 NR_107005 ENSG00000278520 MIR7851 hsa-mir-7851 microRNA 7851 ncRNA 179.75-18 chr15 60501116 60501596 + 0.5 NA intron (NM_134260, intron 9 of 11) MIR|SINE|MIR 22178 NR_120342 101928784 Hs.655155 NR_120339 ENSG00000245534 RORA-AS1 - RORA antisense RNA 1 ncRNA 169-26 chr17 67738576 67739072 + 0.5 NA intron (NM_001303272, intron 13 of 16) intron (NM_001303272, intron 13 of 16) -1846 NR_003706 100124536 Hs.693446 NR_003706 ENSG00000200394 SNORA38B - small nucleolar RNA, H/ACA box 38B snoRNA 216.5-16 chr2 36148914 36149702 + 0.5 NA Intergenic MamSINE1|SINE|tRNA-RTE 206262 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 174-26 chr18 12164293 12164858 + 0.5 NA Intergenic L1MA2|LINE|L1 -36204 NR_049896 497259 Hs.451609 NR_049896 C18orf61 - uncharacterized LOC497259 ncRNA 166.25-39 chr22 17256617 17257247 + 0.5 NA TTS (NR_038398) TTS (NR_038398) 9801 NR_038398 27442 Hs.517394 NR_038398 ENSG00000241832 CECR3 - cat eye syndrome chromosome region, candidate 3 ncRNA 178-49 chr4 77636404 77636994 + 0.5 NA Intergenic HERVL18-int|LTR|ERVL 124946 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 189.75-81 chr8 139850121 139850762 + 0.5 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -147318 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 174.5-43 chr2 191718371 191718854 + 0.5 NA Intergenic L1MC5|LINE|L1 28431 NR_131917 105747689 Hs.104972 NR_131917 LOC105747689 - uncharacterized LOC105747689 ncRNA 177.5-3 chr1 61391978 61392580 + 0.5 NA intron (NM_001134673, intron 7 of 10) intron (NM_001134673, intron 7 of 10) -138761 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 164-24 chr18 12618571 12619225 + 0.5 NA intron (NM_020148, intron 2 of 15) intron (NM_020148, intron 2 of 15) 37834 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 175.75-17 chr14 81059122 81059727 + 0.5 NA intron (NM_001142626, intron 1 of 8) intron (NM_001142626, intron 1 of 8) 103803 NM_001018036 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 170-4 chr1 111927800 111928302 + 0.5 NA intron (NM_172198, intron 2 of 6) L2a|LINE|L2 18394 NR_046619 100873995 Hs.535274 NR_046619 ENSG00000237556 KCND3-AS1 - KCND3 antisense RNA 1 ncRNA 155-81 chr5 125986148 125986752 + 0.5 NA Intergenic L1MA3|LINE|L1 -193127 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 199.25-23 chr17 8932884 8933414 + 0.5 NA intron (NM_001142633, intron 1 of 18) L1MEf|LINE|L1 -20632 NM_014308 23533 Hs.278901 NM_014308 ENSG00000141506 PIK3R5 F730038I15Rik|FOAP-2|P101-PI3K|p101 phosphoinositide-3-kinase regulatory subunit 5 protein-coding 157.25-44 chr19 32301803 32302367 + 0.5 NA Intergenic MER47A|DNA|TcMar-Tigger -43525 NM_001136156 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 207-13 chr17 66027990 66028722 + 0.5 NA exon (NM_001353127, exon 15 of 27) exon (NM_001353127, exon 15 of 27) 163536 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 149-99 chr8 91442496 91443045 + 0.5 NA Intergenic Intergenic 193451 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 173.5-74 chr6 96741150 96741755 + 0.5 NA Intergenic MER67C|LTR|ERV1 96025 NM_001143957 81491 Hs.221364 NM_030784 ENSG00000112218 GPR63 PSP24(beta)|PSP24B G protein-coupled receptor 63 protein-coding 148.25-17 chr11 38912905 38913340 + 0.5 NA Intergenic L1MA4A|LINE|L1 264264 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 149.25-23 chr13 25558811 25559345 + 0.5 NA intron (NM_016529, intron 14 of 36) intron (NM_016529, intron 14 of 36) 90304 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 153.5-46 chr2 65506117 65506530 + 0.5 NA Intergenic HAL1|LINE|L1 -73724 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 195.25-56 chr8 86084716 86085474 + 0.5 NA Intergenic Intergenic -13815 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 154.25-42 chr18 70304487 70304950 + 0.5 NA intron (NM_004232, intron 1 of 1) L1M4|LINE|L1 15673 NM_004232 9306 Hs.44439 NM_004232 ENSG00000170677 SOCS6 CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4 suppressor of cytokine signaling 6 protein-coding 172.75-72 chr8 144198227 144198768 + 0.5 NA intron (NM_001099281, intron 9 of 11) AluJb|SINE|Alu 49852 NM_001288814 727957 Hs.443139 NM_032450 ENSG00000179832 MROH1 HEATR7A maestro heat like repeat family member 1 protein-coding 157-21 chr11 27370034 27370376 + 0.5 NA intron (NM_018490, intron 17 of 17) intron (NM_018490, intron 17 of 17) -6957 NM_080654 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 L15|NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 157.5-5 chr1 106013964 106014556 + 0.5 NA intron (NR_146609, intron 3 of 5) MSTA-int|LTR|ERVL-MaLR 13993 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 147.25-41 chr18 6373697 6374120 + 0.5 NA TTS (NR_036205) TTS (NR_036205) 517 NR_036205 100422840 NR_036205 ENSG00000283532 MIR4317 - microRNA 4317 ncRNA 162.25-101 chr8 142492740 142493105 + 0.5 NA intron (NM_001702, intron 17 of 30) intron (NM_001702, intron 17 of 30) 43273 NM_001702 575 Hs.194654 NM_001702 ENSG00000181790 ADGRB1 BAI1|GDAIF adhesion G protein-coupled receptor B1 protein-coding 254.5-14 chr16 53642101 53642831 + 0.5 NA intron (NM_001127897, intron 17 of 24) intron (NM_001127897, intron 17 of 24) 61393 NM_015272 23322 Hs.298382 NM_015272 ENSG00000103494 RPGRIP1L CORS3|FTM|JBTS7|MKS5|NPHP8|PPP1R134 RPGRIP1 like protein-coding 171.75-91 chr8 133507291 133507810 + 0.5 NA intron (NM_003033, intron 2 of 8) MIRb|SINE|MIR 64337 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 152.75-74 chr5 31574539 31574850 + 0.5 NA Intergenic L1MC4a|LINE|L1 42393 NM_018356 55322 Hs.519246 NM_018356 ENSG00000082213 C5orf22 - chromosome 5 open reading frame 22 protein-coding 176.5-87 chr8 88933011 88933504 + 0.5 NA Intergenic L1PREC2|LINE|L1 -605774 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 150-15 chr11 27450533 27451125 + 0.5 NA intron (NM_018490, intron 1 of 17) intron (NM_018490, intron 1 of 17) -20902 NR_131169 105376671 Hs.568999 NR_131169 ENSG00000254862 LOC105376671 lnc-BBOX1-1 uncharacterized LOC105376671 ncRNA 187.75-4 chr10 11518194 11518932 + 0.5 NA exon (NM_001080491, exon 4 of 14) exon (NM_001080491, exon 4 of 14) 13717 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 193.75-22 chr14 50486816 50487571 + 0.5 NA intron (NM_198794, intron 3 of 31) AluSc|SINE|Alu 45376 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 153.75-62 chr5 51164074 51164605 + 0.5 NA Intergenic L1PA13|LINE|L1 -194152 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 157.75-14 chr10 37927800 37928286 + 0.5 NA Intergenic Intergenic 47937 NR_138069 219749 Hs.499429 NM_145011 ENSG00000175395 ZNF25 KOX19|Zfp9 zinc finger protein 25 protein-coding 197-6 chr12 107022477 107023241 + 0.5 NA intron (NM_004075, intron 1 of 12) (A)n|Simple_repeat|Simple_repeat -35693 NM_025198 80298 Hs.5009 NM_025198 ENSG00000120832 MTERF2 MTERFD3|mTERFL mitochondrial transcription termination factor 2 protein-coding 161-80 chr7 38048603 38049047 + 0.5 NA Intergenic L1MA4A|LINE|L1 127506 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 265.75-10 chr3 95324185 95324716 + 0.5 NA Intergenic L1PB3|LINE|L1 358743 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 156-93 chr8 101656983 101657403 + 0.5 NA intron (NM_024915, intron 14 of 15) intron (NM_024915, intron 14 of 15) 133776 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 157.25-99 chr8 77419349 77419945 + 0.5 NA Intergenic Intergenic -31050 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 160-75 chr6 97268841 97269431 + 0.5 NA intron (NM_001350600, intron 6 of 23) L1ME3G|LINE|L1 14080 NM_001350600 253714 Hs.444292 NM_198468 ENSG00000146263 MMS22L C6orf167|dJ39B17.2 MMS22 like, DNA repair protein protein-coding 156.25-66 chr5 14623950 14624363 + 0.5 NA Intergenic L1MEc|LINE|L1 28226 NR_132981 106635684 NR_132981 SNORD141B - small nucleolar RNA, C/D box 141B snoRNA 197.25-53 chrX 118957682 118958117 + 0.5 NA Intergenic AluSx3|SINE|Alu -16715 NR_110311 79836 Hs.144266 NM_024778 ENSG00000175556 LONRF3 RNF127 LON peptidase N-terminal domain and ring finger 3 protein-coding 176.25-69 chr8 129351143 129351621 + 0.5 NA TTS (NR_130919) TTS (NR_130919) -110142 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 260.75-16 chr21 27760988 27761646 + 0.5 NA Intergenic Intergenic 38938 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 173.5-82 chr7 44302044 44302461 + 0.5 NA intron (NM_172081, intron 1 of 18) L1MC2|LINE|L1 23342 NM_172080 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 150.75-68 chr4 114212021 114212522 + 0.5 NA Intergenic Intergenic -232624 NM_024590 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 149.5-11 chr10 23573177 23573558 + 0.5 NA Intergenic Intergenic -121360 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 186.25-51 chr5 131248320 131248857 + 0.5 NA Intergenic L1ME3F|LINE|L1 -15421 NM_001038702 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 209-24 chr2 114667527 114667969 + 0.5 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 165800 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 153.75-39 chr20 3827781 3828250 + 0.5 NA 3' UTR (NM_001204447, exon 3 of 3) 3' UTR (NM_001204447, exon 3 of 3) 7468 NM_018347 55317 Hs.104806 NM_018347 ENSG00000125843 AP5S1 C20orf29 adaptor related protein complex 5 subunit sigma 1 protein-coding 157-22 chr11 55380004 55380461 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 12348 NM_001005275 81328 Hs.554529 NM_001005275 ENSG00000181958 OR4A15 OR11-118 olfactory receptor family 4 subfamily A member 15 protein-coding 190.25-60 chr8 118865745 118866257 + 0.5 NA Intergenic LTR33|LTR|ERVL 85884 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 252-7 chr4 39019334 39020056 + 0.5 NA intron (NM_001303228, intron 1 of 6) L1MA7|LINE|L1 12714 NM_024943 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 175.5-41 chr18 7524465 7525078 + 0.5 NA Intergenic Intergenic -42545 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 195 chr1 13900662 13901253 + 0.5 NA Intergenic Intergenic 151542 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 193-32 chr3 85149274 85150018 + 0.5 NA intron (NM_001167674, intron 1 of 9) AluY|SINE|Alu -87382 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 193.75-51 chr5 105906151 105906726 + 0.5 NA Intergenic Intergenic 806964 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 149.5-75 chr5 102553501 102554039 + 0.5 NA Intergenic Intergenic -27598 NR_047462 100861468 Hs.519483 NR_047462 ENSG00000250958 LINC00492 - long intergenic non-protein coding RNA 492 ncRNA 186.75-16 chr11 77094848 77095325 + 0.5 NA intron (NM_004055, intron 3 of 12) intron (NM_004055, intron 3 of 12) -7754 NM_006189 4975 Hs.673853 NM_006189 ENSG00000254550 OMP - olfactory marker protein protein-coding 175.75-57 chr5 30447238 30447714 + 0.5 NA Intergenic L1MEh|LINE|L1 566916 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 151.25-45 chr2 143400665 143401148 + 0.5 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 271487 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 185-14 chr11 105974821 105975461 + 0.5 NA intron (NM_001077243, intron 16 of 16) intron (NM_001077243, intron 16 of 16) 47099 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 164.25-60 chr3 114559958 114560482 + 0.5 NA intron (NR_121662, intron 3 of 6) intron (NR_121662, intron 3 of 6) 63986 NM_001164347 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 185-15 chr11 130034333 130034779 + 0.5 NA Intergenic L1ME3E|LINE|L1 -31721 NM_199437 56980 Hs.275086 NM_020228 ENSG00000170325 PRDM10 PFM7|TRIS PR/SET domain 10 protein-coding 145.75-35 chr15 59770924 59771385 + 0.5 NA Intergenic Intergenic -81834 NM_004330 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 219-11 chr2 164883146 164884004 + 0.5 NA Intergenic L1MC1|LINE|L1 -41499 NM_001278458 22837 Hs.470457 NM_014900 ENSG00000082438 COBLL1 COBLR1 cordon-bleu WH2 repeat protein like 1 protein-coding 161.25-47 chr3 124370706 124371099 + 0.5 NA intron (NM_001024660, intron 10 of 59) HSMAR2|DNA|TcMar-Mariner -3430 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 166-28 chr15 47115803 47116336 + 0.5 NA Intergenic Intergenic -68020 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 174-27 chr18 40767054 40767623 + 0.5 NA Intergenic Intergenic 701052 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 227.75-11 chr14 72477533 72478387 + 0.5 NA intron (NM_001370288, intron 11 of 16) intron (NM_001370288, intron 11 of 16) -38860 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 241-13 chr16 76197253 76198104 + 0.5 NA Intergenic Intergenic -79723 NM_001322181 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 149.5-13 chr10 120427869 120428391 + 0.5 NA Intergenic MIR|SINE|MIR -28824 NM_001318166 196051 Hs.40479 NM_001030059 ENSG00000203805 PLPP4 DPPL2|PPAPDC1|PPAPDC1A phospholipid phosphatase 4 protein-coding 166.75-13 chr10 101433351 101433712 + 0.5 NA intron (NM_001256856, intron 2 of 13) L2b|LINE|L2 79366 NM_033637 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 209.5-14 chr14 56779454 56780216 + 0.5 NA Intergenic AluSx|SINE|Alu 25832 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 161.5-48 chr2 82305198 82305754 + 0.5 NA Intergenic Intergenic -551327 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 187.75-16 chr13 41731940 41732506 + 0.5 NA intron (NM_001009814, intron 21 of 25) intron (NM_001009814, intron 21 of 25) -163828 NR_049803 100847026 NR_049803 ENSG00000284584 MIR5006 - microRNA 5006 ncRNA 155.75-45 chr17 69255179 69255633 + 0.5 NA intron (NM_018672, intron 30 of 37) intron (NM_018672, intron 30 of 37) -10591 NM_080282 10349 Hs.25377 NM_080282 ENSG00000154263 ABCA10 EST698739 ATP binding cassette subfamily A member 10 protein-coding 237.5-13 chr2 17019828 17020586 + 0.5 NA Intergenic L1MC1|LINE|L1 -354373 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 161.75-8 chr11 12578994 12579454 + 0.5 NA Intergenic L1MEc|LINE|L1 -95197 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 174-33 chr2 213824875 213825270 + 0.5 NA intron (NR_047660, intron 9 of 14) L1MA3|LINE|L1 67005 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 152.75-64 chr4 34897292 34897753 + 0.5 NA Intergenic L1MA7|LINE|L1 -627775 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 161.5-94 chr9 77927922 77928457 + 0.5 NA intron (NM_002072, intron 1 of 6) intron (NM_002072, intron 1 of 6) 103622 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 200-44 chr8 83754629 83755104 + 0.5 NA Intergenic MIRb|SINE|MIR 351108 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 158-16 chr12 17997056 17997597 + 0.5 NA Intergenic AluY|SINE|Alu 92867 NM_001286201 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 151.75-52 chr2 181260505 181261022 + 0.5 NA intron (NR_130784, intron 2 of 4) L1MD|LINE|L1 44889 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 149-37 chr2 34006614 34007003 + 0.5 NA intron (NR_126403, intron 4 of 5) L1MA10|LINE|L1 -60418 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 161.25-7 chr10 49153778 49154292 + 0.5 NA TTS (NM_001010863) TTS (NM_001010863) -20015 NM_001164484 170370 Hs.646291 NM_001164484 ENSG00000172538 FAM170B C10orf73 family with sequence similarity 170 member B protein-coding 179-62 chr8 110942791 110943449 + 0.5 NA intron (NR_125417, intron 5 of 5) L1MA4|LINE|L1 84313 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 180.25-30 chr2 46858909 46859573 + 0.5 NA TTS (NR_024452) TTS (NR_024452) 31377 NR_024452 100134259 Hs.114449 NR_024452 ENSG00000239332 LINC01119 - long intergenic non-protein coding RNA 1119 ncRNA 163.75 chr1 19189101 19189559 + 0.5 NA intron (NM_020765, intron 11 of 105) L1M5|LINE|L1 20936 NM_020765 23352 Hs.148078 NM_020765 ENSG00000127481 UBR4 RBAF600|ZUBR1|p600 ubiquitin protein ligase E3 component n-recognin 4 protein-coding 154-101 chr8 19164600 19165128 + 0.5 NA Intergenic Intergenic 80658 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 250.25-7 chr13 104940014 104940889 + 0.5 NA Intergenic (AAT)n|Simple_repeat|Simple_repeat -525416 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 199.5-17 chr16 68155209 68155881 + 0.5 NA intron (NM_004555, intron 3 of 10) intron (NM_004555, intron 3 of 10) 70175 NM_173165 4775 Hs.436585 NM_004555 ENSG00000072736 NFATC3 NF-AT4c|NFAT4|NFATX nuclear factor of activated T cells 3 protein-coding 150.75-9 chr10 66306188 66306663 + 0.5 NA intron (NM_001127384, intron 12 of 17) intron (NM_001127384, intron 12 of 17) -619611 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 147-91 chr5 125599353 125599785 + 0.5 NA intron (NR_109887, intron 3 of 3) Tigger2a|DNA|TcMar-Tigger 106308 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 152.25-6 chr1 110209682 110210281 + 0.5 NA promoter-TSS (NR_046546) promoter-TSS (NR_046546) 6 NR_046546 100873974 Hs.130515 NR_046546 LINC02586 KCNC4-AS1 long intergenic non-protein coding RNA 2586 ncRNA 187-20 chr2 77702790 77703415 + 0.5 NA Intergenic Intergenic -180669 NM_001282924 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 171.75-48 chr21 20649637 20650313 + 0.5 NA Intergenic L1MC1|LINE|L1 153133 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 152-8 chr10 67215764 67216209 + 0.5 NA intron (NM_001127384, intron 6 of 17) intron (NM_001127384, intron 6 of 17) 187424 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 203.5-3 chr1 81273444 81274072 + 0.5 NA Intergenic Intergenic -32434 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 205.75-25 chr15 49062452 49063136 + 0.5 NA Intergenic LTR1A2|LTR|ERV1 -16348 NM_001193489 9728 Hs.9997 NM_014701 ENSG00000138593 SECISBP2L SBP2L|SLAN SECIS binding protein 2 like protein-coding 158.75-60 chr4 92330722 92331226 + 0.5 NA intron (NM_001286838, intron 1 of 14) L2b|LINE|L2 26575 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 183-16 chr14 74106763 74107340 + 0.5 NA intron (NM_001024674, intron 5 of 5) intron (NM_001024674, intron 5 of 5) 22098 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 171.75-31 chr15 90802359 90802983 + 0.5 NA intron (NM_001287247, intron 17 of 19) AluJr|SINE|Alu -65917 NM_002569 5045 Hs.513153 NM_002569 ENSG00000140564 FURIN FUR|PACE|PCSK3|SPC1 furin, paired basic amino acid cleaving enzyme protein-coding 161.5-61 chr3 23184494 23185074 + 0.5 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 17794 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 195.75-64 chr6 37355295 37355889 + 0.5 NA intron (NR_046399, intron 1 of 7) intron (NR_046399, intron 1 of 7) 1609 NM_003958 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding 148.75-98 chr8 64142110 64142632 + 0.5 NA intron (NR_125826, intron 3 of 4) L1MA4|LINE|L1 226187 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 147.5-8 chr1 221225384 221225759 + 0.5 NA Intergenic L1MA8|LINE|L1 110725 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 171.75-18 chr11 128777542 128778050 + 0.5 NA intron (NM_001167681, intron 5 of 9) intron (NM_001167681, intron 5 of 9) 64673 NM_000220 3758 Hs.527830 NM_000220 ENSG00000151704 KCNJ1 KIR1.1|ROMK|ROMK1 potassium voltage-gated channel subfamily J member 1 protein-coding 275-11 chr2 178077673 178078730 + 0.5 NA intron (NM_001077197, intron 2 of 20) L2c|LINE|L2 -5424 NM_016953 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 165.5-39 chr16 75697615 75698112 + 0.5 NA intron (NM_001351309, intron 1 of 3) MER1B|DNA|hAT-Charlie 3598 NM_001351309 100033411 NM_001351307 ENSG00000282757 DUXB - double homeobox B protein-coding 152.25-43 chr2 40091618 40092088 + 0.5 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 174219 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 147-94 chr5 166997100 166997548 + 0.5 NA Intergenic MIR|SINE|MIR -70954 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 173.5-94 chrX 54508917 54509290 + 0.5 NA Intergenic AluJb|SINE|Alu -12869 NM_004463 2245 Hs.709201 NM_004463 ENSG00000102302 FGD1 AAS|FGDY|MRXS16|ZFYVE3 FYVE, RhoGEF and PH domain containing 1 protein-coding 215.25-43 chr8 49125651 49126471 + 0.5 NA Intergenic MIR3|SINE|MIR 53717 NM_001256598 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 150.5-28 chr11 91376965 91377497 + 0.5 NA Intergenic THE1D|LTR|ERVL-MaLR -508029 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 180.75-29 chr19 24358206 24358795 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -195053 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 179.25-40 chr2 41425174 41425734 + 0.5 NA Intergenic L1ME2|LINE|L1 -452101 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 169.5-12 chr10 61376143 61376551 + 0.5 NA Intergenic Ricksha_c|DNA|MULE-MuDR -76292 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 169.5-69 chr4 113124783 113125300 + 0.5 NA intron (NM_001354237, intron 1 of 46) intron (NM_001354237, intron 1 of 46) 8344 NM_001354230 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 148-89 chr7 93543454 93543953 + 0.5 NA intron (NM_001164737, intron 2 of 15) intron (NM_001164737, intron 2 of 15) 16107 NM_001164738 799 Hs.489127 NM_001742 ENSG00000004948 CALCR CRT|CT-R|CTR|CTR1 calcitonin receptor protein-coding 194.5-5 chr10 29720254 29720760 + 0.5 NA intron (NM_001323599, intron 1 of 38) L1MEc|LINE|L1 15294 NM_003174 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 218-17 chr3 165466361 165467130 + 0.5 NA intron (NR_125764, intron 3 of 5) intron (NR_125764, intron 3 of 5) 259785 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 148.5-70 chr4 33109628 33110163 + 0.5 NA Intergenic Intergenic 758857 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 208.25-15 chr12 15212754 15213339 + 0.5 NA intron (NM_032918, intron 2 of 4) intron (NM_032918, intron 2 of 4) 8371 NM_032918 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 205-2 chr1 193564436 193565119 + 0.5 NA Intergenic Intergenic 260032 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 187-49 chr5 143918223 143918859 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR 106380 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 184.5-64 chr5 107227947 107228504 + 0.5 NA Intergenic Intergenic -217211 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 149.75-81 chr6 63404320 63404778 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -84566 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 167.25-53 chr4 61657526 61657935 + 0.5 NA intron (NM_001371343, intron 5 of 23) intron (NM_001371343, intron 5 of 23) 455558 NM_001371342 170.25-83 chr9 127796650 127797165 + 0.5 NA Intergenic L2b|LINE|L2 -5951 NM_001288803 2356 Hs.335084 NM_004957 ENSG00000136877 FPGS - folylpolyglutamate synthase protein-coding 161-24 chr12 126416157 126416673 + 0.5 NA intron (NR_147498, intron 2 of 3) L1MC4a|LINE|L1 -9731 NR_146291 105370059 NR_146291 LINC02350 - long intergenic non-protein coding RNA 2350 ncRNA 203-8 chr10 66252916 66253450 + 0.5 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) -672853 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 153.75-101 chr9 108307370 108307887 + 0.5 NA Intergenic L1ME2|LINE|L1 548358 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 159-38 chr2 146863722 146864317 + 0.5 NA Intergenic LTR41B|LTR|ERVL 276962 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 151.75-34 chr16 78353349 78353737 + 0.5 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 253889 NM_016373 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 195.75-30 chr19 27775657 27776291 + 0.5 NA Intergenic Intergenic -17457 NR_110691 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 161-64 chr4 97602527 97603064 + 0.5 NA intron (NM_174952, intron 10 of 10) intron (NM_174952, intron 10 of 10) 235869 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 200-34 chr4 47150685 47151116 + 0.5 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 119333 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 158.5-101 chr8 134079950 134080358 + 0.5 NA Intergenic L1MD1|LINE|L1 193658 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 146.25-74 chr4 117753197 117753695 + 0.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR -80955 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 157.75-29 chr13 68992945 68993304 + 0.5 NA Intergenic L1MC3|LINE|L1 -107799 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 173.25-75 chr8 128114832 128115306 + 0.5 NA Intergenic Intergenic -35047 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 180.75-53 chr5 128372467 128372956 + 0.5 NA intron (NM_001999, intron 15 of 64) AluJb|SINE|Alu 165534 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 181-20 chr18 7646328 7646891 + 0.5 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 79293 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 155.75-109 chr9 75849008 75849554 + 0.5 NA Intergenic Intergenic -41363 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 206.75-58 chr9 85812504 85813025 + 0.5 NA intron (NR_029410, intron 1 of 8) intron (NR_029410, intron 1 of 8) 6762 NR_029410 389765 Hs.715986 NR_029410 LOC389765 - kinesin family member 27 pseudogene pseudo 169.75-30 chr14 37161708 37162375 + 0.5 NA intron (NM_001171170, intron 1 of 10) MLT1B|LTR|ERVL-MaLR -9985 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 157.5-81 chr5 117839040 117839480 + 0.5 NA intron (NR_104997, intron 1 of 2) L1ME3Cz|LINE|L1 108899 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 147.75-28 chr12 30841196 30841608 + 0.5 NA Intergenic Intergenic 45721 NR_040245 100287314 Hs.355210 NR_040245 LINC00941 lncRNA-MUF long intergenic non-protein coding RNA 941 ncRNA 145.75-10 chr10 34992065 34992551 + 0.5 NA Intergenic L1MEj|LINE|L1 81975 NM_001198778 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 191.75-60 chr7 43671500 43672164 + 0.5 NA intron (NR_163914, intron 1 of 8) THE1D|LTR|ERVL-MaLR 57691 NM_001371317 189.25-37 chr4 48249349 48249868 + 0.5 NA intron (NM_003215, intron 1 of 17) intron (NM_003215, intron 1 of 17) 20230 NM_003215 7006 Hs.479670 NM_003215 ENSG00000135605 TEC PSCTK4 tec protein tyrosine kinase protein-coding 251.75-14 chr2 177992748 177993520 + 0.5 NA intron (NM_001077197, intron 3 of 20) intron (NM_001077197, intron 3 of 20) -70297 NM_001077358 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 247.75-5 chr12 59154816 59155371 + 0.5 NA Intergenic Intergenic -234555 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 157.5-13 chr11 47929914 47930376 + 0.5 NA Intergenic AluSz|SINE|Alu -50414 NM_001098503 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase receptor type J protein-coding 146-49 chr20 42045485 42045943 + 0.5 NA Intergenic MIR|SINE|MIR -427337 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 221.75-33 chr8 115597542 115597985 + 0.5 NA intron (NM_001282902, intron 3 of 5) L1ME3F|LINE|L1 70250 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 146.25-22 chr13 37242578 37242995 + 0.5 NA Intergenic L1ME4a|LINE|L1 -137122 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 174.5-84 chr8 87257950 87258509 + 0.5 NA intron (NM_173538, intron 6 of 10) MER57-int|LTR|ERV1 391814 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 189.25-5 chr10 9125453 9126049 + 0.5 NA Intergenic Intergenic -149862 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 204.5-27 chr4 32315274 32315860 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL -35471 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 167.75-23 chr12 124560843 124561431 + 0.5 NA intron (NM_001077261, intron 1 of 47) intron (NM_001077261, intron 1 of 47) 6475 NM_001206654 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 157.75-56 chr2 184557958 184558581 + 0.5 NA Intergenic Intergenic -40260 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 187-43 chr5 19726906 19727422 + 0.5 NA intron (NM_001349559, intron 4 of 12) intron (NM_001349559, intron 4 of 12) 159108 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 166.5-79 chr7 70218497 70219146 + 0.5 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) 620346 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 170-69 chr9 8093717 8094255 + 0.5 NA Intergenic Intergenic -294208 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 195.25-46 chr5 53934199 53934856 + 0.5 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) 17072 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 149.75-16 chr11 84679654 84680082 + 0.5 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 41074 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 165-25 chr14 48652590 48653158 + 0.5 NA Intergenic Intergenic -857860 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 149.75-105 chr8 135510892 135511403 + 0.5 NA intron (NM_006558, intron 1 of 8) MIRb|SINE|MIR 53691 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 180.5-5 chr10 14375838 14376359 + 0.5 NA Intergenic LTR8|LTR|ERV1 7179 NR_036181 100422843 NR_036181 ENSG00000266321 MIR4293 - microRNA 4293 ncRNA 160-33 chr18 52920544 52921129 + 0.5 NA intron (NM_005215, intron 3 of 28) L1MC2|LINE|L1 -316265 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 157.25-109 chr9 37682301 37682746 + 0.5 NA intron (NM_001371223, intron 1 of 15) MIR1_Amn|SINE|MIR 14514 NM_001371223 168.5-57 chr2 173084409 173084935 + 0.5 NA intron (NM_133646, intron 1 of 11) intron (NM_133646, intron 1 of 11) 8826 NM_133646 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 152-68 chr4 178584491 178584815 + 0.5 NA Intergenic Intergenic -676717 NR_108093 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 172.25-64 chr6 125189098 125189546 + 0.5 NA intron (NR_149043, intron 2 of 3) intron (NR_149043, intron 2 of 3) 8495 NR_149043 100126584 Hs.640031 NR_149043 LOC100126584 - uncharacterized LOC100126584 ncRNA 178-60 chr7 22447931 22448576 + 0.5 NA intron (NM_001164460, intron 4 of 4) Charlie2b|DNA|hAT-Charlie 52029 NM_001164460 256227 Hs.729825 NM_207342 ENSG00000105889 STEAP1B - STEAP family member 1B protein-coding 153.75-87 chr8 105683938 105684445 + 0.5 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 364648 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 166-86 chrX 38582665 38583225 + 0.5 NA intron (NM_004615, intron 1 of 7) intron (NM_004615, intron 1 of 7) 21467 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 204.5-40 chr6 131474929 131475463 + 0.5 NA Intergenic AluJb|SINE|Alu -98030 NM_001244438 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 153.25-14 chr1 187289303 187289861 + 0.5 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) -154046 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 147.5-73 chr5 23976712 23977038 + 0.5 NA intron (NR_131245, intron 2 of 4) L1M4b|LINE|L1 25527 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 152.75-57 chr2 205361099 205361677 + 0.5 NA intron (NM_205863, intron 18 of 21) MamRep605|LTR?|LTR? -321112 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 151.75-55 chr2 210206058 210206535 + 0.5 NA intron (NM_001608, intron 5 of 10) AluJr4|SINE|Alu 19151 NM_001608 33 Hs.471277 NM_001608 ENSG00000115361 ACADL ACAD4|LCAD acyl-CoA dehydrogenase long chain protein-coding 187.75-52 chr4 44492257 44492823 + 0.5 NA Intergenic Intergenic -43731 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 151-59 chr3 43600917 43601344 + 0.5 NA intron (NM_001346463, intron 2 of 12) intron (NM_001346463, intron 2 of 12) 20796 NM_001346466 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 148.25-101 chr9 102742279 102742616 + 0.5 NA Intergenic L1MEc|LINE|L1 222810 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 150.25-108 chrX 67580472 67580974 + 0.5 NA intron (NM_001011645, intron 2 of 8) L2a|LINE|L2 36100 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 175.25-30 chr18 4166107 4166576 + 0.5 NA intron (NM_001242761, intron 1 of 11) L1MB4|LINE|L1 -98261 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 178.5-54 chr5 100856879 100857400 + 0.5 NA intron (NM_005668, intron 3 of 4) intron (NM_005668, intron 3 of 4) -40574 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 172-45 chr20 19790816 19791499 + 0.5 NA Intergenic Intergenic -95364 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 150.75-65 chr4 85606347 85606827 + 0.5 NA intron (NM_001025616, intron 2 of 9) MIRc|SINE|MIR -115881 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 156-55 chr3 70536414 70536784 + 0.5 NA Intergenic Intergenic -223961 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 214.75-17 chr11 107221521 107222219 + 0.5 NA Intergenic Intergenic -203394 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 170.25-53 chr4 82833820 82834316 + 0.5 NA intron (NM_001300744, intron 19 of 23) MamRep137|DNA|TcMar-Tigger -35211 NM_024906 79966 Hs.379191 NM_024906 ENSG00000145284 SCD5 ACOD4|FADS4|HSCD5|SCD2|SCD4 stearoyl-CoA desaturase 5 protein-coding 183.75-19 chr11 105976746 105977179 + 0.5 NA intron (NM_001077243, intron 16 of 16) intron (NM_001077243, intron 16 of 16) 45278 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 156.25-64 chr4 113736337 113736781 + 0.5 NA intron (NM_001321585, intron 2 of 19) intron (NM_001321585, intron 2 of 19) 25179 NM_001321591 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 145.75-75 chr3 43251736 43252167 + 0.5 NA Intergenic Intergenic -34561 NM_001330750 54861 Hs.476052 NM_017719 ENSG00000163788 SNRK HSNFRK SNF related kinase protein-coding 187.5-15 chr14 43321899 43322500 + 0.5 NA Intergenic MER4D0|LTR|ERV1 1185084 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 234.75-8 chr13 69922757 69923689 + 0.5 NA intron (NM_001286725, intron 3 of 9) intron (NM_001286725, intron 3 of 9) -183990 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 225.75-7 chr12 84175078 84175722 + 0.5 NA Intergenic Intergenic 737399 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 231.75-9 chr14 49220882 49221559 + 0.5 NA Intergenic L2a|LINE|L2 365160 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 181.75-47 chr4 43157201 43157850 + 0.5 NA Intergenic L1PA15|LINE|L1 264259 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 180-31 chr2 67907048 67907607 + 0.5 NA Intergenic Intergenic -81765 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 152.75-79 chr5 78721120 78721621 + 0.5 NA Intergenic Intergenic -72598 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 177-4 chr1 246633217 246633673 + 0.5 NA intron (NM_152609, intron 4 of 10) AluSz|SINE|Alu 66989 NM_152609 163882 Hs.368353 NM_152609 ENSG00000162852 CNST C1orf71|PPP1R64 consortin, connexin sorting protein protein-coding 230-30 chr7 77197324 77197805 + 0.5 NA intron (NM_006682, intron 1 of 1) intron (NM_006682, intron 1 of 1) 2255 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 199.25-61 chr7 23094091 23094620 + 0.5 NA Intergenic L1MB7|LINE|L1 11348 NR_046220 100775104 NR_046220 ENSG00000230658 KLHL7-DT KLHL7-AS1|PLATAK KLHL7 divergent transcript ncRNA 184.25-25 chr16 51260435 51260942 + 0.5 NA intron (NR_039672, intron 6 of 6) intron (NR_039672, intron 6 of 6) -109416 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 172-16 chr11 30443377 30443781 + 0.5 NA intron (NM_001584, intron 3 of 5) intron (NM_001584, intron 3 of 5) 120475 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 159.25-46 chr22 31748069 31748554 + 0.5 NA intron (NM_173566, intron 1 of 8) intron (NM_173566, intron 1 of 8) 1821 NM_173566 253143 Hs.438906 NM_173566 ENSG00000183530 PRR14L C22orf30 proline rich 14 like protein-coding 146.25-93 chr8 56223098 56223635 + 0.5 NA Intergenic L2c|LINE|L2 11577 NM_001011671 79145 Hs.436913 NM_024300 ENSG00000170791 CHCHD7 COX23 coiled-coil-helix-coiled-coil-helix domain containing 7 protein-coding 158.5-102 chr9 81735089 81735606 + 0.5 NA intron (NR_109772, intron 1 of 3) AluSc8|SINE|Alu 45634 NR_109772 101927502 Hs.528628 NR_109772 ENSG00000233926 LOC101927502 - uncharacterized LOC101927502 ncRNA 148.5-85 chr6 133443241 133443733 + 0.5 NA intron (NM_172103, intron 3 of 18) L1MEf|LINE|L1 201988 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 152.25-40 chr2 19244254 19244739 + 0.5 NA Intergenic Intergenic -103933 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 173-3 chr1 51835203 51835727 + 0.5 NA TTS (NR_031580) TTS (NR_031580) 937 NR_031580 100313892 NR_031580 ENSG00000283899 MIR761 hsa-mir-761 microRNA 761 ncRNA 174-71 chr9 27703356 27703844 + 0.5 NA Intergenic Intergenic -129734 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 162.75-48 chr3 48624243 48624691 + 0.5 NA Intergenic Intergenic -2698 NM_001008269 440955 Hs.631922 NM_001008269 ENSG00000183396 TMEM89 - transmembrane protein 89 protein-coding 187.5-16 chr14 47337738 47338296 + 0.5 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 5229 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 211.75-5 chr10 56841526 56842118 + 0.5 NA Intergenic Intergenic 462737 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 171.25-19 chr12 106785992 106786554 + 0.5 NA intron (NR_147137, intron 2 of 10) AluYk3|SINE|Alu -11442 NR_040246 100287944 Hs.742087 NR_040246 ENSG00000257545 LOC100287944 - uncharacterized LOC100287944 ncRNA 172-32 chr2 11638163 11638784 + 0.5 NA intron (NM_014668, intron 31 of 32) intron (NM_014668, intron 31 of 32) 31722 NM_012344 23620 Hs.131138 NM_012344 ENSG00000169006 NTSR2 NTR2 neurotensin receptor 2 protein-coding 180.25-65 chr7 10226873 10227525 + 0.5 NA Intergenic L1MEg|LINE|L1 -475477 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 153-17 chr13 29536205 29536621 + 0.5 NA intron (NM_003045, intron 2 of 12) intron (NM_003045, intron 2 of 12) -48663 NR_046378 100874107 Hs.577987 NR_046378 MTUS2-AS1 - MTUS2 antisense RNA 1 ncRNA 163-68 chr5 142446011 142446620 + 0.5 NA intron (NR_120664, intron 3 of 3) intron (NR_120664, intron 3 of 3) 121022 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 SPRY4-AS1 THCAT68 SPRY4 antisense RNA 1 ncRNA 158.25-94 chr6 25025241 25025725 + 0.5 NA intron (NM_001286446, intron 1 of 13) intron (NM_001286446, intron 1 of 13) 16805 NM_001286446 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 151.75-35 chr17 52587403 52587812 + 0.5 NA Intergenic AluSc|SINE|Alu 197085 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 204.75-24 chr2 64488577 64489194 + 0.5 NA intron (NR_147011, intron 2 of 2) MER5A|DNA|hAT-Charlie 2532 NR_147011 105374774 NR_147011 ENSG00000223863 LINC01805 - long intergenic non-protein coding RNA 1805 ncRNA 171.25-40 chr3 176382793 176383268 + 0.5 NA Intergenic MIR|SINE|MIR -132073 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 155.75-62 chr20 47373169 47373658 + 0.5 NA Intergenic Intergenic -16524 NM_001281773 23613 Hs.446240 NM_012408 ENSG00000101040 ZMYND8 PRKCBP1|PRO2893|RACK7 zinc finger MYND-type containing 8 protein-coding 156.5-29 chr12 83295277 83295687 + 0.5 NA Intergenic L1MA3|LINE|L1 608327 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 186.5-67 chr7 47103578 47104124 + 0.5 NA Intergenic Intergenic 360952 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 159-19 chr14 25869212 25869674 + 0.5 NA Intergenic L1MD2|LINE|L1 683987 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 156.75-3 chr1 47037308 47037844 + 0.5 NA intron (NM_178033, intron 6 of 11) MER20|DNA|hAT-Charlie 13907 NM_178033 260293 Hs.439760 NM_178033 ENSG00000186377 CYP4X1 CYPIVX1 cytochrome P450 family 4 subfamily X member 1 protein-coding 158-93 chr8 134286404 134286751 + 0.5 NA Intergenic Intergenic -311494 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 180-2 chr1 73540260 73540825 + 0.5 NA Intergenic L1MEd|LINE|L1 -134137 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 154.75-104 chr8 139450118 139450550 + 0.5 NA Intergenic Intergenic 252789 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 162.5-54 chr3 49749222 49749724 + 0.5 NA intron (NM_153273, intron 1 of 5) intron (NM_153273, intron 1 of 5) -25499 NM_013334 29925 Hs.567488 NM_013334 ENSG00000173540 GMPPB LGMDR19|MDDGA14|MDDGB14|MDDGC14 GDP-mannose pyrophosphorylase B protein-coding 165-45 chr2 195422989 195423564 + 0.5 NA Intergenic Intergenic -233682 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 157-28 chr13 67820671 67821189 + 0.5 NA Intergenic Intergenic 448543 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 152.25-31 chr16 59322503 59323009 + 0.5 NA Intergenic Intergenic 432435 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 171.25-13 chr12 28847462 28848021 + 0.5 NA Intergenic Intergenic -301537 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 170.75-16 chr13 38805429 38805794 + 0.5 NA intron (NM_207361, intron 6 of 23) intron (NM_207361, intron 6 of 23) 21980 NR_146963 100874073 Hs.253994 NR_146963 FREM2-AS1 - FREM2 antisense RNA 1 ncRNA 178.25-73 chr8 132852543 132852999 + 0.5 NA Intergenic L1MC|LINE|L1 -14187 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 151-23 chr15 71141913 71142353 + 0.5 NA intron (NM_024817, intron 1 of 16) intron (NM_024817, intron 1 of 16) 684 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 171.5-7 chr1 158510067 158510577 + 0.5 NA Intergenic Intergenic 30444 NM_001004472 343406 Hs.451913 NM_001004472 ENSG00000198965 OR10R2 OR1-8|OR10R2Q olfactory receptor family 10 subfamily R member 2 protein-coding 231.5-5 chr11 122843506 122844226 + 0.5 NA intron (NM_019604, intron 1 of 9) intron (NM_019604, intron 1 of 9) 5366 NM_019604 56253 Hs.159523 NM_019604 ENSG00000109943 CRTAM CD355 cytotoxic and regulatory T cell molecule protein-coding 169.5-45 chr2 61965243 61965834 + 0.5 NA intron (NM_152516, intron 1 of 2) intron (NM_152516, intron 1 of 2) 59896 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 180 chr1 46785010 46785482 + 0.5 NA Intergenic MER4-int|LTR|ERV1 -13800 NM_001319161 1580 Hs.436317 NM_000779 ENSG00000142973 CYP4B1 CYPIVB1|P-450HP cytochrome P450 family 4 subfamily B member 1 protein-coding 176.5-91 chr8 113604662 113605177 + 0.5 NA Intergenic Intergenic -167980 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 212.5-35 chr3 173787017 173787789 + 0.5 NA intron (NM_001365928, intron 3 of 6) intron (NM_001365928, intron 3 of 6) 133393 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 169.75-25 chr12 121350189 121350726 + 0.5 NA intron (NM_001137559, intron 1 of 16) AluY|SINE|Alu 1954 NM_001330489 51433 Hs.7101 NM_016237 ENSG00000089053 ANAPC5 APC5 anaphase promoting complex subunit 5 protein-coding 175.75-9 chr11 106659854 106660324 + 0.5 NA Intergenic Intergenic 358387 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 205 chr1 33749516 33750091 + 0.5 NA intron (NM_052896, intron 13 of 69) intron (NM_052896, intron 13 of 69) -110672 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 187.5-31 chr2 54258385 54258823 + 0.5 NA intron (NM_138448, intron 3 of 3) L2a|LINE|L2 -2375 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 169.75-27 chr13 52666467 52666877 + 0.5 NA intron (NM_001130912, intron 10 of 13) intron (NM_001130912, intron 10 of 13) 13836 NM_006704 10910 Hs.281902 NM_006704 ENSG00000165416 SUGT1 SGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone protein-coding 162-74 chr7 89688103 89688529 + 0.5 NA Intergenic L1M8|LINE|L1 -431084 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 180.25-36 chr2 144436901 144437488 + 0.5 NA intron (NM_001171653, intron 2 of 8) intron (NM_001171653, intron 2 of 8) -82420 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 181.75-49 chr4 95820750 95821357 + 0.5 NA Intergenic Intergenic -19040 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 168.75-17 chr11 26838176 26838565 + 0.5 NA Intergenic L1MEf|LINE|L1 -116310 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 169.5-79 chr6 122143380 122143885 + 0.5 NA Intergenic Intergenic -255919 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 153.25-104 chr6 140072578 140072999 + 0.5 NA intron (NR_121622, intron 2 of 3) intron (NR_121622, intron 2 of 3) -81527 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 149-51 chr20 56932431 56932748 + 0.5 NA Intergenic AluJb|SINE|Alu -281107 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 169.75-37 chr15 90191547 90192053 + 0.5 NA promoter-TSS (NM_001324031) promoter-TSS (NM_001324031) -121 NM_001324031 10509 Hs.474935 NM_020210 ENSG00000185033 SEMA4B SEMAC|SemC semaphorin 4B protein-coding 262-5 chr21 23295910 23296707 + 0.5 NA Intergenic AluSx1|SINE|Alu 88527 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 148.5-40 chr2 48696486 48696861 + 0.5 NA intron (NM_000233, intron 9 of 10) intron (NM_000233, intron 9 of 10) 59051 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 270.25-10 chr2 22081126 22082008 + 0.5 NA Intergenic Intergenic -370915 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 177-19 chr14 55625775 55626285 + 0.5 NA intron (NR_073129, intron 6 of 45) L1M7|LINE|L1 45823 NR_073128 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 161-67 chr5 6889495 6889872 + 0.5 NA Intergenic MLT1E2|LTR|ERVL-MaLR -61762 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 168.75-72 chr3 171444436 171444987 + 0.5 NA intron (NM_001161563, intron 1 of 31) intron (NM_001161563, intron 1 of 31) 15694 NM_001161564 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 212-5 chr10 7049526 7050250 + 0.5 NA Intergenic Intergenic 136896 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 167.5-93 chr8 138519643 138520283 + 0.5 NA Intergenic Intergenic -22233 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 182.5-28 chr2 115842712 115843372 + 0.5 NA 3' UTR (NM_001321905, exon 27 of 27) 3' UTR (NM_001321905, exon 27 of 27) 499227 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 188.25-34 chr3 158017988 158018364 + 0.5 NA Intergenic Intergenic 87987 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 166.5-44 chr21 23095879 23096242 + 0.5 NA Intergenic Intergenic 16776 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 156-54 chr3 68064785 68065176 + 0.5 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 60733 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 155.75-68 chr3 142647613 142648040 + 0.5 NA intron (NM_002670, intron 1 of 15) intron (NM_002670, intron 1 of 15) -9071 NM_001172312 5357 Hs.203637 NM_002670 ENSG00000120756 PLS1 - plastin 1 protein-coding 208.75-5 chr11 39036840 39037595 + 0.5 NA Intergenic Intergenic 388359 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 145.75-69 chr3 3817504 3818041 + 0.5 NA intron (NM_001324188, intron 2 of 2) intron (NM_001324188, intron 2 of 2) -16897 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 172.25-71 chr8 84292043 84292600 + 0.5 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 107655 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 149.5-2 chr1 88610331 88610762 + 0.5 NA intron (NR_110682, intron 1 of 3) AluSq2|SINE|Alu -73598 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 164.75-80 chr7 780568 781128 + 0.5 NA intron (NR_075098, intron 12 of 12) (T)n|Simple_repeat|Simple_repeat -34709 NM_001171946 23353 Hs.438072 NM_025154 ENSG00000164828 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 207-51 chr8 84320779 84321402 + 0.5 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) -94394 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 155-73 chr4 79808912 79809461 + 0.5 NA Intergenic L1PA10|LINE|L1 -18285 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 202.5-25 chr18 44822075 44822795 + 0.5 NA intron (NM_001130110, intron 2 of 3) intron (NM_001130110, intron 2 of 3) 141547 NM_015559 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding 162.5-87 chr8 114819581 114820046 + 0.5 NA Intergenic L1M4|LINE|L1 848200 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 150.5 chr1 28993061 28993459 + 0.5 NA intron (NM_004437, intron 3 of 18) intron (NM_004437, intron 3 of 18) 78684 NM_001166006 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 194.5-42 chr4 13467136 13467608 + 0.5 NA intron (NM_001017979, intron 3 of 6) L1MCb|LINE|L1 16968 NM_001017979 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 241.75-19 chr5 128201064 128201843 + 0.5 NA Intergenic Intergenic 117687 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 188.75-45 chr4 20490734 20491338 + 0.5 NA intron (NM_001289135, intron 8 of 35) intron (NM_001289135, intron 8 of 35) -37239 NR_029631 407000 NR_029631 ENSG00000207732 MIR218-1 MIRN218-1|mir-218-1 microRNA 218-1 ncRNA 145.75-38 chr17 33942357 33942681 + 0.5 NA intron (NM_001094, intron 1 of 9) MIR3|SINE|MIR 214287 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 176-56 chr5 73349235 73349790 + 0.5 NA Intergenic L1MB7|LINE|L1 11606 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 189.75-32 chr18 12483587 12484059 + 0.5 NA intron (NM_020148, intron 8 of 15) intron (NM_020148, intron 8 of 15) 51049 NR_136514 105371998 Hs.515283 NR_136514 LOC105371998 - uncharacterized LOC105371998 ncRNA 186.75-17 chr11 87380111 87380733 + 0.5 NA Intergenic Intergenic 338989 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 190.75-24 chr14 63612092 63612645 + 0.5 NA intron (NM_080666, intron 2 of 2) AluYa8|SINE|Alu 29503 NM_001008726 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 171.25-22 chr15 83288077 83288707 + 0.5 NA Intergenic Intergenic -3728 NM_001717 646 Hs.459153 NM_001717 ENSG00000169594 BNC1 BNC|BSN1|HsT19447 basonuclin 1 protein-coding 154.25-72 chr6 72351319 72351881 + 0.5 NA intron (NM_001350433, intron 21 of 25) MIR|SINE|MIR -15146 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 176-20 chr16 59487888 59488342 + 0.5 NA Intergenic Intergenic 267076 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 146.5-81 chr4 161655163 161655727 + 0.5 NA intron (NM_001128428, intron 7 of 14) MLT1K|LTR|ERVL-MaLR -367288 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 189.25-9 chr10 55189708 55190264 + 0.5 NA intron (NM_001354404, intron 2 of 34) L1ME3|LINE|L1 -388695 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 160-91 chr9 28081128 28081673 + 0.5 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -507534 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 218.75-12 chr2 72531086 72531698 + 0.5 NA intron (NR_135774, intron 8 of 19) L1MD1|LINE|L1 294641 NM_001321730 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 152.5-107 chr8 23614689 23615243 + 0.5 NA Intergenic Intergenic 67923 NM_001256339 4824 Hs.55999 NM_006167 ENSG00000167034 NKX3-1 BAPX2|NKX3|NKX3.1|NKX3A NK3 homeobox 1 protein-coding 161.25-17 chr12 64077495 64077959 + 0.5 NA intron (NM_001346201, intron 8 of 21) L1ME3A|LINE|L1 144569 NM_001300941 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 171.5-40 chr19 47850422 47850809 + 0.5 NA Intergenic L1M4|LINE|L1 28678 NM_000554 1406 Hs.617342 NM_000554 ENSG00000105392 CRX CORD2|CRD|LCA7|OTX3 cone-rod homeobox protein-coding 167.75-92 chr8 88291914 88292342 + 0.5 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 35355 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 176.75-27 chr17 63574279 63574867 + 0.5 NA intron (NR_073585, intron 1 of 7) L1ME1|LINE|L1 24096 NM_005828 10238 Hs.410596 NM_005828 ENSG00000136485 DCAF7 AN11|HAN11|SWAN-1|WDR68 DDB1 and CUL4 associated factor 7 protein-coding 174.75-48 chr4 63961344 63961774 + 0.5 NA Intergenic L1M5|LINE|L1 447891 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 181.5-56 chr5 36498134 36498631 + 0.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -107973 NM_001289939 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 179-15 chr14 84228336 84228785 + 0.5 NA Intergenic Intergenic -1043372 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 197-30 chr3 121392990 121393741 + 0.5 NA intron (NM_001348343, intron 23 of 27) L1PB4|LINE|L1 152623 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 181-50 chr8 79436089 79436671 + 0.5 NA Intergenic Intergenic 104192 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 303.75-6 chr4 107359946 107360735 + 0.5 NA Intergenic Intergenic -324027 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 175-18 chr2 96613120 96613707 + 0.5 NA intron (NR_047656, intron 5 of 19) intron (NR_047656, intron 5 of 19) 24578 NR_047658 55683 Hs.516341 NM_017991 ENSG00000114982 KANSL3 KIAA1310|NSL3|Rcd1 KAT8 regulatory NSL complex subunit 3 protein-coding 208.5-49 chr5 19849950 19850567 + 0.5 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) 36014 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 190.75-68 chr8 77948062 77948508 + 0.5 NA Intergenic Intergenic 497588 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 201.5-26 chr2 84607278 84607906 + 0.5 NA intron (NM_001370, intron 21 of 76) L1PA16|LINE|L1 91137 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 184.25-18 chr13 44928147 44928752 + 0.5 NA Intergenic Intergenic 61022 NM_012345 26747 Hs.525006 NM_012345 ENSG00000083635 NUFIP1 NUFIP|bA540M5.1 nuclear FMR1 interacting protein 1 protein-coding 179.5-30 chr17 63074728 63075127 + 0.5 NA intron (NM_025185, intron 3 of 25) intron (NM_025185, intron 3 of 25) 108692 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 158.75-38 chr2 44411570 44411975 + 0.5 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 49825 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 176.25 chr1 35249006 35249644 + 0.5 NA Intergenic AluSx1|SINE|Alu -19384 NM_005095 9202 Hs.269211 NM_005095 ENSG00000146463 ZMYM4 CDIR|MYM|ZNF198L3|ZNF262 zinc finger MYM-type containing 4 protein-coding 186.5-23 chr2 14024290 14024959 + 0.5 NA Intergenic Intergenic 376334 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 154.25-53 chr3 82847237 82847725 + 0.5 NA Intergenic Intergenic 861339 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 175-47 chr6 123104001 123104448 + 0.5 NA Intergenic L1PA8A|LINE|L1 107989 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 166-6 chr10 26461405 26462009 + 0.5 NA intron (NM_019043, intron 2 of 14) L1M5|LINE|L1 23366 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 172.5-68 chr6 61031006 61031684 + 0.5 NA Intergenic SATR1|Satellite|Satellite -542785 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 172.25-63 chr6 55355839 55356281 + 0.5 NA intron (NM_207410, intron 5 of 8) L1M4c|LINE|L1 28591 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 155.5-92 chr6 75491998 75492502 + 0.5 NA intron (NR_110608, intron 1 of 1) intron (NR_110608, intron 1 of 1) 1550 NM_001300866 27145 Hs.201488 NM_015687 ENSG00000118407 FILIP1 FILIP filamin A interacting protein 1 protein-coding 161.75-34 chr2 158083861 158084217 + 0.5 NA intron (NM_001135098, intron 2 of 8) L1PB1|LINE|L1 -17831 NM_173355 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 191.5-27 chr17 74735680 74736284 + 0.5 NA promoter-TSS (NM_001163989) promoter-TSS (NM_001163989) -578 NM_001330471 326624 Hs.351413 NM_175738 ENSG00000172794 RAB37 - RAB37, member RAS oncogene family protein-coding 165.25-39 chr3 94050982 94051410 + 0.5 NA intron (NR_135621, intron 8 of 8) intron (NR_135621, intron 8 of 8) 11720 NM_176815 200895 Hs.718516 NM_176815 ENSG00000178700 DHFR2 DHFRL1|DHFRP4 dihydrofolate reductase 2 protein-coding 183.5-7 chr11 109782603 109783265 + 0.5 NA Intergenic Intergenic -310458 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 147.75-36 chr14 85412358 85412798 + 0.5 NA intron (NR_102737, intron 2 of 2) AluSx1|SINE|Alu 18663 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 161-91 chr9 79331109 79331634 + 0.5 NA Intergenic Intergenic -185705 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 158.25-111 chr8 90112357 90112806 + 0.5 NA Intergenic L2c|LINE|L2 -29702 NM_004929 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 175-25 chr20 53493509 53494119 + 0.5 NA 3' UTR (NM_001193421, exon 3 of 3) 3' UTR (NM_001193421, exon 3 of 3) -58956 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 165-78 chr6 152266515 152266914 + 0.5 NA intron (NM_182961, intron 100 of 145) intron (NM_182961, intron 100 of 145) -81336 NM_001347701 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 168.5-20 chr12 103833391 103833827 + 0.5 NA intron (NM_001031701, intron 1 of 13) intron (NM_001031701, intron 1 of 13) 7625 NM_001031701 51559 Hs.48428 NM_016575 ENSG00000111696 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 201.25-15 chr16 53214501 53215218 + 0.5 NA intron (NM_001352157, intron 2 of 37) MER104|DNA|TcMar-Tc2 6408 NM_001352158 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 177-74 chr9 70263451 70264118 + 0.5 NA intron (NM_015110, intron 1 of 24) intron (NM_015110, intron 1 of 24) 4806 NM_015110 23137 Hs.534189 NM_015110 ENSG00000198887 SMC5 SMC5L1 structural maintenance of chromosomes 5 protein-coding 236.5-13 chr2 29322776 29323716 + 0.5 NA intron (NM_004304, intron 6 of 28) MIRc|SINE|MIR -99346 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 156-57 chr3 172047928 172048356 + 0.5 NA intron (NM_001135095, intron 1 of 25) intron (NM_001135095, intron 1 of 25) 7611 NM_001135095 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 190.25-4 chr10 90245724 90246116 + 0.5 NA Intergenic Intergenic -288547 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 149.5-99 chr9 22718825 22719313 + 0.5 NA intron (NR_038977, intron 3 of 5) intron (NR_038977, intron 3 of 5) 72869 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 150.25-41 chr16 75772764 75773290 + 0.5 NA Intergenic L1MEg|LINE|L1 -46537 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 206-6 chr10 123624710 123625395 + 0.5 NA Intergenic L1MC5|LINE|L1 -41303 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 208.25-29 chr5 39323436 39324243 + 0.5 NA intron (NM_001737, intron 5 of 10) L1M1|LINE|L1 40656 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 164.75-89 chr8 85238060 85238480 + 0.5 NA Intergenic L1MC5a|LINE|L1 -7188 NM_198584 377677 Hs.127189 NM_198584 ENSG00000185015 CA13 CAXIII carbonic anhydrase 13 protein-coding 166.25-56 chr6 137338715 137339337 + 0.5 NA Intergenic MIR|SINE|MIR -119596 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 152.5-37 chr17 13446880 13447403 + 0.5 NA Intergenic Intergenic 96505 NR_031679 100302287 NR_031679 ENSG00000221698 MIR548H3 MIR548H-3|MIRN548H3|hsa-mir-548h-3 microRNA 548h-3 ncRNA 165.5-60 chr3 174485235 174485664 + 0.5 NA Intergenic L1PA13|LINE|L1 -373885 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 157.75-20 chr10 91976266 91976679 + 0.5 NA intron (NM_003972, intron 14 of 37) MER21C|LTR|ERVL 52702 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 148.5-45 chr2 104068667 104069149 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR 339424 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 155-32 chr14 71792961 71793411 + 0.5 NA Intergenic L1MB8|LINE|L1 -138985 NM_001370289 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 195-9 chr10 59692099 59692843 + 0.5 NA intron (NM_194298, intron 1 of 5) L1MB7|LINE|L1 17420 NM_194298 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 257.25-9 chr11 95912607 95913318 + 0.5 NA intron (NM_016156, intron 1 of 14) intron (NM_016156, intron 1 of 14) 11145 NM_201281 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 150.25-76 chr5 10368820 10369367 + 0.5 NA intron (NM_001270661, intron 1 of 22) MLT1I|LTR|ERVL-MaLR 15398 NM_001270661 10299 Hs.432862 NM_005885 ENSG00000145495 MARCH6 DOA10|MARCH-VI|RNF176|TEB4 membrane associated ring-CH-type finger 6 protein-coding 148.25-35 chr16 13467430 13467895 + 0.5 NA Intergenic Intergenic -452495 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 224.75-46 chr9 8614052 8614609 + 0.5 NA intron (NM_130392, intron 3 of 30) Tigger17c|DNA|TcMar-Tigger 119616 NM_130392 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 207-41 chr5 120780674 120781420 + 0.5 NA Intergenic AluSc|SINE|Alu 249583 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 164-50 chr3 156873481 156873935 + 0.5 NA intron (NM_001004316, intron 3 of 12) L1MA4A|LINE|L1 47355 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 159.5-15 chr12 104527705 104528181 + 0.5 NA intron (NM_018413, intron 1 of 2) THE1D|LTR|ERVL-MaLR -63690 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 194.75-49 chr8 14213194 14213715 + 0.5 NA intron (NM_139167, intron 4 of 7) L1MDa|LINE|L1 583764 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 239.75-4 chr10 32101319 32102227 + 0.5 NA Intergenic L1MC5a|LINE|L1 -45348 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 146.75-56 chr2 154414140 154414628 + 0.5 NA intron (NM_052917, intron 11 of 12) MIR|SINE|MIR 43054 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 211.25-10 chr12 45949114 45949914 + 0.5 NA intron (NM_004719, intron 4 of 14) MER33|DNA|hAT-Charlie 41060 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 164-62 chr5 18108455 18108839 + 0.5 NA Intergenic A-rich|Low_complexity|Low_complexity 301373 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 180.5-66 chr7 70752324 70752808 + 0.5 NA intron (NM_015570, intron 6 of 18) intron (NM_015570, intron 6 of 18) -379578 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 175.5-70 chr4 17012142 17012707 + 0.5 NA Intergenic Intergenic -113615 NM_001304435 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 232.25-7 chr1 232820706 232821337 + 0.5 NA Intergenic L2a|LINE|L2 16129 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule associated protein 10 protein-coding 150.75-59 chr3 140182213 140182766 + 0.5 NA intron (NM_022131, intron 2 of 16) intron (NM_022131, intron 2 of 16) 247304 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 187.25-61 chr7 21540813 21541341 + 0.5 NA Intergenic Intergenic -1962 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 159.75-100 chr9 26808590 26809008 + 0.5 NA Intergenic Intergenic 84003 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 155.5-80 chr5 7834510 7835057 + 0.5 NA intron (NM_001089584, intron 2 of 2) Tigger3b|DNA|TcMar-Tigger 16350 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 174-50 chr5 21080579 21081185 + 0.5 NA Intergenic L1MC1|LINE|L1 -378598 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 158.75-11 chr11 86051037 86051639 + 0.5 NA intron (NM_001206947, intron 1 of 18) intron (NM_001206947, intron 1 of 18) 17746 NM_001206946 8301 Hs.163893 NM_007166 ENSG00000073921 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 257.25-14 chr2 214028278 214028950 + 0.5 NA intron (NR_047660, intron 12 of 14) intron (NR_047660, intron 12 of 14) 270547 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 177.75-27 chr18 32863324 32863888 + 0.5 NA Intergenic Intergenic -90583 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 147-99 chr6 68139355 68139800 + 0.5 NA Intergenic HERVL-int|LTR|ERVL 84226 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 157.75-40 chr17 52280189 52280623 + 0.5 NA Intergenic Tigger9b|DNA|TcMar-Tigger -110116 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 151-14 chr14 53396726 53397179 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 243598 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 231.75-2 chr1 183028225 183029080 + 0.5 NA intron (NM_002293, intron 1 of 27) intron (NM_002293, intron 1 of 27) 5232 NM_002293 3915 Hs.609663 NM_002293 ENSG00000135862 LAMC1 LAMB2 laminin subunit gamma 1 protein-coding 156.5-30 chr12 106939215 106939763 + 0.5 NA Intergenic MER4B|LTR|ERV1 -16233 NM_001319664 90488 Hs.257664 NM_152261 ENSG00000151135 TMEM263 C12orf23 transmembrane protein 263 protein-coding 184-32 chr20 55039552 55040218 + 0.5 NA Intergenic L1MA9|LINE|L1 -383158 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 158.25-74 chr4 39380852 39381370 + 0.5 NA Intergenic L1MA2|LINE|L1 -14749 NM_001363496 5981 Hs.507475 NM_002913 ENSG00000035928 RFC1 A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C subunit 1 protein-coding 155-88 chr6 98886293 98886810 + 0.5 NA intron (NR_103836, intron 5 of 7) L1MEi|LINE|L1 51977 NM_005604 5454 Hs.182505 NM_005604 ENSG00000184486 POU3F2 BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7 POU class 3 homeobox 2 protein-coding 150.25-27 chr13 74187117 74187706 + 0.5 NA Intergenic MIR|SINE|MIR -44033 NR_144451 100507612 Hs.447508 NR_144451 ENSG00000235532 LINC00402 - long intergenic non-protein coding RNA 402 ncRNA 189.25-58 chr9 72701730 72702233 + 0.5 NA intron (NM_138691, intron 8 of 23) intron (NM_138691, intron 8 of 23) 172128 NR_121180 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 147.75-101 chr7 42693810 42694374 + 0.5 NA intron (NR_110833, intron 1 of 2) intron (NR_110833, intron 1 of 2) 12355 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 352 chr1 117277247 117278256 + 0.5 NA Intergenic Intergenic -17715 NR_126408 104355292 Hs.576446 NR_126408 ENSG00000235202 LINC01525 lnc-MAN1A2-1 long intergenic non-protein coding RNA 1525 ncRNA 204.5 chr1 44432215 44432876 + 0.5 NA intron (NM_001319957, intron 1 of 13) AluSx1|SINE|Alu 8544 NM_001319957 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 175.75-30 chr2 19061905 19062519 + 0.5 NA Intergenic Intergenic -35241 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 186.75-59 chr3 168628743 168629305 + 0.5 NA intron (NR_021485, intron 4 of 15) intron (NR_021485, intron 4 of 15) 77170 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 179-29 chr2 138418002 138418664 + 0.5 NA Intergenic L1ME3A|LINE|L1 -83437 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 148.5-84 chr6 126533431 126533793 + 0.5 NA Intergenic Intergenic 48981 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 162.75-93 chrX 82047484 82047966 + 0.5 NA Intergenic L1PREC2|LINE|L1 845623 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 148.25-47 chr2 106968715 106969023 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -81760 NM_001142352 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 165.75-100 chr8 68503069 68503621 + 0.5 NA intron (NR_146187, intron 4 of 13) L1MC5|LINE|L1 -171854 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 211-18 chr18 54291161 54291985 + 0.5 NA intron (NR_147257, intron 9 of 9) L1M4a1|LINE|L1 21999 NM_001351614 11201 Hs.438533 NM_007195 ENSG00000101751 POLI RAD30B|RAD3OB|eta2 DNA polymerase iota protein-coding 152-100 chr9 79878595 79879100 + 0.5 NA intron (NR_121213, intron 1 of 2) L1MA4|LINE|L1 54317 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 150-84 chr8 75427686 75428123 + 0.5 NA intron (NM_001330561, intron 1 of 11) L1ME3E|LINE|L1 20255 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 151.75-6 chr1 173794996 173795458 + 0.5 NA Intergenic L1M3|LINE|L1 28905 NM_001171182 91687 Hs.531856 NM_033319 ENSG00000120334 CENPL C1orf155|CENP-L|dJ383J4.3 centromere protein L protein-coding 199-3 chr10 29916997 29917567 + 0.5 NA Intergenic Intergenic 142304 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 155-93 chr7 2247943 2248360 + 0.5 NA intron (NM_001367555, intron 2 of 4) AluJo|SINE|Alu -1160 NR_160264 4521 Hs.534331 NM_002452 ENSG00000106268 NUDT1 MTH1 nudix hydrolase 1 protein-coding 145.75-61 chr2 187228130 187228594 + 0.5 NA Intergenic Intergenic 219890 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 163-14 chr10 102311592 102312226 + 0.5 NA intron (NM_001199378, intron 3 of 39) intron (NM_001199378, intron 3 of 39) 66377 NM_004193 8729 Hs.290243 NM_004193 ENSG00000107862 GBF1 ARF1GEF golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein-coding 155.25-25 chr14 41914893 41915450 + 0.5 NA Intergenic L1MB4|LINE|L1 308315 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 169.5-74 chr5 38813543 38814212 + 0.5 NA intron (NR_109951, intron 1 of 3) L1ME3E|LINE|L1 31952 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 260.25-4 chr11 8956036 8956915 + 0.5 NA intron (NM_001286094, intron 1 of 3) intron (NM_001286094, intron 1 of 3) 7967 NM_020644 56674 Hs.501853 NM_020644 ENSG00000175348 TMEM9B C11orf15 TMEM9 domain family member B protein-coding 161-56 chr3 107727677 107728137 + 0.5 NA intron (NM_001276286, intron 5 of 16) intron (NM_001276286, intron 5 of 16) 150161 NR_024276 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 177-47 chr4 106103140 106103808 + 0.5 NA intron (NM_001290768, intron 25 of 26) intron (NM_001290768, intron 25 of 26) -80996 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 158.75-15 chr12 119245108 119245628 + 0.5 NA Intergenic L1ME1|LINE|L1 58012 NR_024246 144742 Hs.524782 NR_024246 ENSG00000281196 LINC00934 - long intergenic non-protein coding RNA 934 ncRNA 188-44 chr3 131465684 131466337 + 0.5 NA intron (NM_007208, intron 9 of 9) AluJr|SINE|Alu 13223 NR_002985 677836 Hs.735762 NR_002985 SNORA58 ACA58|SNORA58B small nucleolar RNA, H/ACA box 58 snoRNA 153.25-95 chr5 97419201 97419671 + 0.5 NA Intergenic MER115|DNA|hAT-Tip100 -85260 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 146-83 chr7 25750304 25750661 + 0.5 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) 550 NR_157814 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 162.75-42 chr2 188792958 188793462 + 0.5 NA Intergenic L1M5|LINE|L1 -3087 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 176.5-84 chr8 28807032 28807533 + 0.5 NA intron (NR_026826, intron 6 of 14) L1MEh|LINE|L1 82633 NM_001172562 55756 Hs.162397 NM_018250 ENSG00000104299 INTS9 CPSF2L|INT9|RC74 integrator complex subunit 9 protein-coding 184.25-29 chr2 45394213 45394674 + 0.5 NA intron (NM_018079, intron 19 of 20) intron (NM_018079, intron 19 of 20) -139502 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 233.5-32 chr8 138495426 138496040 + 0.5 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 1528 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 255.5-17 chr20 21751269 21752100 + 0.5 NA Intergenic L1ME3A|LINE|L1 46020 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 178.25-27 chr18 65586302 65586734 + 0.5 NA Intergenic L1MA3|LINE|L1 -163734 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 147-42 chr2 44804217 44804615 + 0.5 NA Intergenic Intergenic 134472 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 167.25-13 chr11 96356434 96357030 + 0.5 NA intron (NM_024725, intron 9 of 9) intron (NM_024725, intron 9 of 9) -13537 NM_032427 84441 Hs.428214 NM_032427 ENSG00000184384 MAML2 MAM-3|MAM2|MAM3|MLL-MAML2 mastermind like transcriptional coactivator 2 protein-coding 203.5-8 chr11 12950158 12950691 + 0.5 NA Intergenic AluSz|SINE|Alu 39124 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 BLACAT2 long intergenic non-protein coding RNA 958 ncRNA 152.25-39 chr2 16517502 16518000 + 0.5 NA Intergenic Intergenic 148083 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 176-36 chr2 174109356 174110036 + 0.5 NA intron (NM_001011708, intron 6 of 9) intron (NM_001011708, intron 6 of 9) 84416 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 160.75-75 chr3 12237441 12237981 + 0.5 NA Intergenic Intergenic -49774 NM_001354666 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 146.25-81 chr5 167515142 167515602 + 0.5 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -58287 NM_001368146 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 189.75-49 chr3 88085977 88086671 + 0.5 NA exon (NM_001350134, exon 2 of 9) exon (NM_001350134, exon 2 of 9) 27069 NM_001350135 55279 Hs.591650 NM_018293 ENSG00000175105 ZNF654 - zinc finger protein 654 protein-coding 239.5-3 chr1 174673551 174674226 + 0.5 NA intron (NM_001366446, intron 14 of 25) intron (NM_001366446, intron 14 of 25) -26651 NM_001366451 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 174.25-80 chr9 121425964 121426502 + 0.5 NA Intergenic L1MA4|LINE|L1 -55929 NM_001270527 2040 Hs.253903 NM_004099 ENSG00000148175 STOM BND7|EPB7|EPB72 stomatin protein-coding 192-12 chr11 126948901 126949657 + 0.5 NA intron (NM_001301097, intron 1 of 15) intron (NM_001301097, intron 1 of 15) 8533 NR_046986 100874251 Hs.319053 NR_046986 ENSG00000254960 KIRREL3-AS2 - KIRREL3 antisense RNA 2 ncRNA 150.5-12 chr1 193729003 193729460 + 0.5 NA Intergenic Intergenic 424486 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 249-5 chr2 72290093 72290846 + 0.5 NA intron (NR_135773, intron 19 of 21) Charlie21a|DNA|hAT-Charlie -142607 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 146.5-32 chr15 59450387 59450859 + 0.5 NA intron (NM_152450, intron 1 of 8) L1ME3Cz|LINE|L1 12437 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 304.5-2 chr14 74086880 74087861 + 0.5 NA intron (NM_001024674, intron 1 of 5) AluY|SINE|Alu 2417 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 237.25-21 chr8 26108867 26109460 + 0.5 NA Intergenic Intergenic -63750 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 157.25-68 chr4 49708746 49709148 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 722305 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 174.5-49 chr3 32711995 32712599 + 0.5 NA intron (NR_046352, intron 3 of 16) MIRb|SINE|MIR 16756 NM_001256742 25904 Hs.444851 NM_015442 ENSG00000182973 CNOT10 - CCR4-NOT transcription complex subunit 10 protein-coding 212.25-8 chr10 57267081 57267810 + 0.5 NA Intergenic Intergenic 37114 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 151.5-24 chr14 41282561 41283038 + 0.5 NA Intergenic (ATTATTA)n|Simple_repeat|Simple_repeat -324057 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 159.5-62 chr4 40975899 40976532 + 0.5 NA intron (NM_004307, intron 6 of 17) intron (NM_004307, intron 6 of 17) -119023 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 171-66 chr8 61633130 61633645 + 0.5 NA intron (NM_032468, intron 14 of 14) intron (NM_032468, intron 14 of 14) 56424 NM_001164751 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 164.5-85 chr7 40603090 40603573 + 0.5 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 376608 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 259-11 chr6 140011472 140012204 + 0.5 NA intron (NR_121623, intron 1 of 1) Chap1_Mam|DNA|hAT-Charlie -20577 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 242.5-38 chr6 125131091 125131752 + 0.5 NA Intergenic L1MEd|LINE|L1 -22352 NM_001003396 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 263.25-6 chr12 7620501 7621283 + 0.5 NA Intergenic Intergenic 45016 NM_001644 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 146.25-106 chrX 45730277 45730606 + 0.5 NA promoter-TSS (NR_102268) promoter-TSS (NR_102268) -647 NR_102268 392452 Hs.745266 NR_102268 LOC392452 - mitochondrial fission factor pseudogene pseudo 196-33 chr3 159990476 159991216 + 0.5 NA intron (NM_001354583, intron 2 of 5) intron (NM_001354583, intron 2 of 5) 2011 NM_001354583 3592 Hs.673 NM_000882 ENSG00000168811 IL12A CLMF|IL-12A|NFSK|NKSF1|P35 interleukin 12A protein-coding 152.75-91 chr7 52851603 52852015 + 0.5 NA Intergenic L1MC3|LINE|L1 -183824 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 155.25-71 chr5 29591146 29591570 + 0.5 NA Intergenic L1M2|LINE|L1 -195382 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 176-30 chr2 34330761 34331292 + 0.5 NA Intergenic Intergenic 263800 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 156.25-47 chr20 51286949 51287388 + 0.5 NA Intergenic Intergenic 165809 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 171-56 chr5 135516377 135516831 + 0.5 NA Intergenic L1ME1|LINE|L1 19360 NM_006161 4762 Hs.248149 NM_006161 ENSG00000181965 NEUROG1 AKA|Math4C|NEUROD3|bHLHa6|ngn1 neurogenin 1 protein-coding 151.25-93 chr8 113276139 113276598 + 0.5 NA intron (NM_001363185, intron 3 of 66) MLT1E2|LTR|ERVL-MaLR 100784 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 166.25-36 chr2 225833801 225834443 + 0.5 NA Intergenic L1PA2|LINE|L1 -308672 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 146.75-84 chr4 134162998 134163363 + 0.5 NA Intergenic L1PB3|LINE|L1 38609 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 204-31 chr4 43563516 43564183 + 0.5 NA Intergenic Intergenic -71306 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 182-29 chr2 153801420 153801887 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -70269 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 180.5-28 chr18 1590641 1591272 + 0.5 NA Intergenic L1MEc|LINE|L1 -231327 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 218-6 chr12 7470548 7471233 + 0.5 NA TTS (NM_004244) TTS (NM_004244) -26705 NM_174941 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 173.5-63 chr5 7636178 7636559 + 0.5 NA intron (NM_020546, intron 4 of 24) MER54A|LTR|ERVL 214765 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 171.25-11 chr11 97922130 97922574 + 0.5 NA Intergenic Intergenic -1098597 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 236-15 chr17 39810119 39810750 + 0.5 NA intron (NM_001257409, intron 2 of 5) Charlie2b|DNA|hAT-Charlie -32209 NM_001284516 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding 186.5-50 chr4 65532115 65532790 + 0.5 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 137036 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 197-29 chr3 74777858 74778302 + 0.5 NA Intergenic Intergenic -256940 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 150-24 chr13 59110415 59110795 + 0.5 NA Intergenic Intergenic -877488 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 157.25-17 chr13 46980640 46980966 + 0.5 NA Intergenic L1MB1|LINE|L1 -83727 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 146.75 chr1 4568784 4569188 + 0.5 NA Intergenic Intergenic -2501 NR_147025 105376679 NR_147025 ENSG00000232596 LINC01646 - long intergenic non-protein coding RNA 1646 ncRNA 153.5-108 chr8 91534391 91534848 + 0.5 NA Intergenic MamRep605|LTR?|LTR? 285300 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 177.25-9 chr11 40686858 40687565 + 0.5 NA intron (NM_020929, intron 1 of 4) MIR|SINE|MIR -394081 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 167.75-75 chr5 115248160 115248584 + 0.5 NA intron (NM_005023, intron 2 of 8) MIR3|SINE|MIR 14505 NM_005023 5229 Hs.254006 NM_005023 ENSG00000164219 PGGT1B BGGI|GGTI protein geranylgeranyltransferase type I subunit beta protein-coding 170.75-33 chr2 76321817 76322247 + 0.5 NA Intergenic L1ME2z|LINE|L1 -611117 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 162-71 chr7 37265327 37265692 + 0.5 NA intron (NM_001206480, intron 5 of 21) L2|LINE|L2 88159 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 149.25-32 chr15 25287858 25288249 + 0.5 NA intron (NR_146177, intron 146 of 147) L1MA9|LINE|L1 9710 NR_001295 338428 NR_001295 ENSG00000274640 SNORD109A HBII-438A small nucleolar RNA, C/D box 109A snoRNA 150-2 chr1 64051913 64052392 + 0.5 NA intron (NM_005012, intron 4 of 8) intron (NM_005012, intron 4 of 8) 60053 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 270.75-28 chr8 105235877 105236662 + 0.5 NA Intergenic L1MDa|LINE|L1 -82169 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 163.25-54 chr4 44516311 44516826 + 0.5 NA Intergenic Intergenic -67759 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 281 chr1 68333089 68333901 + 0.5 NA Intergenic Intergenic -100949 NM_001002292 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 169.75-51 chr3 194246869 194247392 + 0.5 NA promoter-TSS (NR_125402) promoter-TSS (NR_125402) -518 NR_125402 101929337 Hs.548086 NR_125402 ENSG00000238097 LINC02037 - long intergenic non-protein coding RNA 2037 ncRNA 191.75-11 chr10 124330926 124331312 + 0.5 NA Intergenic MLT1C|LTR|ERVL-MaLR 87804 NM_001322974 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 152.5-108 chr8 31576474 31577034 + 0.5 NA Intergenic Intergenic -62998 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 222.25-18 chr18 57874310 57874790 + 0.5 NA Intergenic THE1D|LTR|ERVL-MaLR -71235 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 190.25-21 chr2 223122848 223123554 + 0.5 NA Intergenic Intergenic 71271 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 161.5-79 chr5 142367417 142367888 + 0.5 NA intron (NR_120664, intron 3 of 3) intron (NR_120664, intron 3 of 3) 42359 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 SPRY4-AS1 THCAT68 SPRY4 antisense RNA 1 ncRNA 173-59 chr4 137339323 137339852 + 0.5 NA Intergenic Intergenic -126788 NR_149105 105377441 Hs.668386 NR_149105 LINC02511 - long intergenic non-protein coding RNA 2511 ncRNA 149-102 chr8 143006392 143006834 + 0.5 NA intron (NR_026913, intron 1 of 1) L1PA13|LINE|L1 10785 NR_102426 100128627 NR_102426 CDC42P3 - cell division cycle 42 pseudogene 3 pseudo 159-63 chr4 70593900 70594519 + 0.5 NA intron (NM_016519, intron 2 of 12) intron (NM_016519, intron 2 of 12) 1953 NM_016519 258 Hs.272396 NM_016519 ENSG00000178522 AMBN AI1F ameloblastin protein-coding 155.75-26 chr13 28468940 28469498 + 0.5 NA intron (NM_002019, intron 1 of 29) intron (NM_002019, intron 1 of 29) 25909 NM_002019 2321 Hs.594454 NM_002019 ENSG00000102755 FLT1 FLT|FLT-1|VEGFR-1|VEGFR1 fms related tyrosine kinase 1 protein-coding 275.25-5 chr4 84340573 84341299 + 0.5 NA Intergenic L1M4b|LINE|L1 -41767 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 207-5 chr10 100380684 100381212 + 0.5 NA intron (NR_026762, intron 1 of 2) LTR7B|LTR|ERV1 7372 NR_026762 90271 Hs.628088 NR_026762 ENSG00000235823 OLMALINC C10orf75|HI-LNC80|LINC00263|NCRNA00263|OLMALINCAS oligodendrocyte maturation-associated long intergenic non-coding RNA ncRNA 202-26 chr2 168783720 168784319 + 0.5 NA non-coding (NR_045786, exon 2 of 4) non-coding (NR_045786, exon 2 of 4) 2410 NR_045787 100861402 Hs.506829 NR_045786 ENSG00000227617 CERS6-AS1 - CERS6 antisense RNA 1 ncRNA 168.75-10 chr10 52770400 52771022 + 0.5 NA exon (NM_000242, exon 2 of 4) exon (NM_000242, exon 2 of 4) 989 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 151.75-5 chr1 157738282 157738652 + 0.5 NA Intergenic L1P4a|LINE|L1 -37698 NR_135215 115352 Hs.292449 NM_052939 ENSG00000160856 FCRL3 CD307c|FCRH3|IFGP3|IRTA3|SPAP2 Fc receptor like 3 protein-coding 159-61 chr4 63068635 63069029 + 0.5 NA Intergenic L1MC1|LINE|L1 -907067 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 152.25-25 chr14 40306074 40306674 + 0.5 NA Intergenic Intergenic -648337 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 158.5-81 chr5 14267798 14268397 + 0.5 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 124755 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 158.5-58 chr21 30283695 30284202 + 0.5 NA promoter-TSS (NM_001085455) promoter-TSS (NM_001085455) -998 NM_001085455 643803 Hs.580883 NM_001085455 ENSG00000188694 KRTAP24-1 KAP24.1 keratin associated protein 24-1 protein-coding 179.5-76 chr7 125605090 125605612 + 0.5 NA Intergenic Intergenic -341060 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 153.25-31 chr12 18530009 18530505 + 0.5 NA intron (NM_001288774, intron 24 of 32) L2|LINE|L2 207252 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 151.5-13 chr10 110424826 110425360 + 0.5 NA Intergenic L1ME4a|LINE|L1 -72814 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 150-29 chr15 61805241 61805614 + 0.5 NA Intergenic Ricksha_b|DNA|MULE-MuDR 75509 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 166-31 chr17 63152912 63153348 + 0.5 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 186895 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 196.75-50 chr6 130168725 130169363 + 0.5 NA intron (NM_001277185, intron 7 of 10) AluJb|SINE|Alu 46841 NM_001277185 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 235.75-9 chr12 118721376 118721937 + 0.5 NA Intergenic MamTip3|DNA|hAT-Tip100 40023 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 246.75-13 chr4 115064115 115064743 + 0.5 NA intron (NM_022569, intron 2 of 13) intron (NM_022569, intron 2 of 13) 49191 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 147.25-22 chr11 34077775 34078158 + 0.5 NA intron (NM_005898, intron 6 of 18) intron (NM_005898, intron 6 of 18) 26235 NM_005898 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 148.25-93 chr8 87053488 87054070 + 0.5 NA intron (NM_173538, intron 4 of 10) HUERS-P3-int|LTR|ERV1 187364 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 182.75-61 chr6 55641048 55641469 + 0.5 NA Intergenic Intergenic -62044 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 171.75-58 chr4 111599492 111600086 + 0.5 NA Intergenic Intergenic -545665 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 183.75-46 chr2 121014205 121014858 + 0.5 NA Intergenic L1MB5|LINE|L1 222250 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 237.75-12 chr18 22268135 22269000 + 0.5 NA Intergenic AluSq2|SINE|Alu 99130 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 209.25-44 chr7 125970684 125971475 + 0.5 NA Intergenic Intergenic -706788 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 227-13 chr3 122411694 122412410 + 0.5 NA 3' UTR (NM_014367, exon 5 of 5) 3' UTR (NM_014367, exon 5 of 5) 4010 NM_019069 54554 Hs.567513 NM_019069 ENSG00000196981 WDR5B - WD repeat domain 5B protein-coding 174-42 chr4 60313362 60313901 + 0.5 NA Intergenic Intergenic -608988 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 217.5-10 chr12 15725775 15726514 + 0.5 NA intron (NM_004447, intron 1 of 20) intron (NM_004447, intron 1 of 20) 63244 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 152.5-38 chr17 32683985 32684354 + 0.5 NA intron (NM_015194, intron 16 of 21) L1PA2|LINE|L1 192955 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 201.75-36 chr7 16423425 16424008 + 0.5 NA Intergenic Intergenic -2178 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 198-29 chr4 84870186 84870737 + 0.5 NA intron (NM_014991, intron 3 of 67) L1MCa|LINE|L1 -95155 NR_152774 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 160.25-39 chr2 183444159 183444673 + 0.5 NA Intergenic L1ME3B|LINE|L1 319973 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 176.25-44 chr3 20441145 20441810 + 0.5 NA Intergenic L1MA2|LINE|L1 99009 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 179.25-9 chr10 26703116 26703682 + 0.5 NA intron (NM_001321978, intron 2 of 9) AluJb|SINE|Alu 5698 NM_014317 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 157-38 chr16 7801902 7802319 + 0.5 NA Intergenic Intergenic 469265 NM_145892 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 163-37 chr16 81930789 81931246 + 0.5 NA intron (NM_002661, intron 24 of 32) intron (NM_002661, intron 24 of 32) 80453 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 229.5-20 chr21 34052005 34052572 + 0.5 NA Intergenic Helitron1Na_Mam|RC|Helitron -21290 NM_032476 64968 Hs.302742 NM_032476 ENSG00000243927 MRPS6 C21orf101|MRP-S6|RPMS6|S6mt mitochondrial ribosomal protein S6 protein-coding 163-33 chr15 59246033 59246568 + 0.5 NA intron (NM_004998, intron 4 of 27) AluSx1|SINE|Alu 39457 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 194-11 chr10 66409625 66410392 + 0.5 NA intron (NM_001127384, intron 11 of 17) intron (NM_001127384, intron 11 of 17) -516028 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 194.75-9 chr12 2313271 2313997 + 0.5 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 43858 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 182.75-78 chr9 32821406 32821871 + 0.5 NA Intergenic Intergenic 38098 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 212.75-20 chr3 81946701 81947300 + 0.5 NA Intergenic MER72|LTR|ERV1 -39142 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 146.75-106 chr7 78709544 78710047 + 0.5 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -299193 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 174-37 chr22 26801828 26802434 + 0.5 NA Intergenic Intergenic -58080 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 287 chr1 51820447 51821197 + 0.5 NA intron (NM_001101662, intron 8 of 30) intron (NM_001101662, intron 8 of 30) 15580 NR_031580 100313892 NR_031580 ENSG00000283899 MIR761 hsa-mir-761 microRNA 761 ncRNA 328.5-10 chr8 129111221 129112355 + 0.5 NA Intergenic Intergenic 129452 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 180.25-66 chr7 24638896 24639526 + 0.5 NA intron (NM_016447, intron 3 of 12) intron (NM_016447, intron 3 of 12) 65759 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 156-69 chr4 160893877 160894462 + 0.5 NA Intergenic LTR16B2|LTR|ERVL -1116385 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 169.25-34 chr2 231490571 231490945 + 0.5 NA Intergenic AluJb|SINE|Alu 23581 NR_024079 151477 Hs.375211 NM_173513 ENSG00000181798 LINC00471 C2orf52 long intergenic non-protein coding RNA 471 ncRNA 166.75-59 chr3 194362392 194363041 + 0.5 NA intron (NM_130830, intron 1 of 1) intron (NM_130830, intron 1 of 1) 7027 NM_130830 131578 Hs.288467 NM_130830 ENSG00000172061 LRRC15 LIB leucine rich repeat containing 15 protein-coding 165.75-97 chr7 158934878 158935382 + 0.5 NA intron (NM_001350918, intron 25 of 26) intron (NM_001350918, intron 25 of 26) -73224 NR_024394 154822 Hs.544783 NM_198345 ENSG00000231419 LINC00689 - long intergenic non-protein coding RNA 689 ncRNA 177-51 chr5 54780738 54781379 + 0.5 NA Intergenic L1ME4a|LINE|L1 -36800 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 210-59 chr9 31744525 31745311 + 0.5 NA Intergenic Intergenic -363428 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 186.25-15 chr14 62737246 62737816 + 0.5 NA intron (NM_172375, intron 9 of 9) MIRc|SINE|MIR 307927 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 171.5-68 chr3 162879843 162880420 + 0.5 NA Intergenic Tigger3a|DNA|TcMar-Tigger 423170 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 152.75-61 chr3 153426618 153427167 + 0.5 NA intron (NR_146713, intron 5 of 6) Tigger3c|DNA|TcMar-Tigger -57603 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 162-33 chr2 24799996 24800427 + 0.5 NA intron (NM_001322101, intron 3 of 7) AluSx1|SINE|Alu 6786 NR_136182 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 180-7 chr10 94489807 94490304 + 0.5 NA intron (NM_015188, intron 3 of 12) AluSq2|SINE|Alu -55712 NM_001289070 3070 Hs.463677 NM_018063 ENSG00000119969 HELLS ICF4|LSH|Nbla10143|PASG|SMARCA6 helicase, lymphoid specific protein-coding 167.5-69 chr4 140796720 140797364 + 0.5 NA Intergenic AluSx|SINE|Alu -40657 NM_015130 23158 Hs.480819 NM_015130 ENSG00000109436 TBC1D9 GRAMD9|MDR1 TBC1 domain family member 9 protein-coding 192.25-52 chr5 42483670 42484116 + 0.5 NA intron (NM_001242401, intron 2 of 10) intron (NM_001242401, intron 2 of 10) 58912 NM_001242401 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 173.5-22 chr13 90570833 90571240 + 0.5 NA Intergenic Intergenic 77748 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 221.25-18 chr2 123400764 123401337 + 0.5 NA Intergenic L3|LINE|CR1 -327569 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 201.5-12 chr14 58491720 58492458 + 0.5 NA intron (NM_001329947, intron 25 of 29) intron (NM_001329947, intron 25 of 29) 52408 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 214.75-38 chr5 101664243 101664849 + 0.5 NA Intergenic MER57A1|LTR|ERV1 631738 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 149.75-83 chr6 77603984 77604439 + 0.5 NA Intergenic Intergenic -46063 NM_001282136 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 226-14 chr21 25297734 25298333 + 0.5 NA Intergenic L1PA10|LINE|L1 133668 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 156.25-45 chr2 204250012 204250562 + 0.5 NA Intergenic L2a|LINE|L2 -295188 NM_001302769 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 163.75-21 chr12 45622340 45622853 + 0.5 NA Intergenic L2a|LINE|L2 105325 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 165.5-9 chr1 163348539 163348916 + 0.5 NA intron (NM_145697, intron 12 of 13) intron (NM_145697, intron 12 of 13) 26773 NM_031423 83540 Hs.651950 NM_031423 ENSG00000143228 NUF2 CDCA1|CT106|NUF2R NUF2 component of NDC80 kinetochore complex protein-coding 209.25-28 chr20 51148865 51149486 + 0.5 NA Intergenic L1ME3A|LINE|L1 -126068 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 165.5-3 chr1 47617857 47618419 + 0.5 NA Intergenic MIR|SINE|MIR -180821 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 228-24 chr5 128466264 128466838 + 0.5 NA intron (NM_001999, intron 5 of 64) intron (NM_001999, intron 5 of 64) 71694 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 206.25-34 chr5 24492741 24493270 + 0.5 NA intron (NM_001317222, intron 8 of 10) intron (NM_001317222, intron 8 of 10) 151973 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 167-11 chr11 26308900 26309510 + 0.5 NA intron (NM_001313726, intron 1 of 27) intron (NM_001313726, intron 1 of 27) -21198 NR_132968 105376599 Hs.125537 NR_132968 ENSG00000254819 ANO3-AS1 - ANO3 antisense RNA 1 ncRNA 182.75-7 chr10 28139397 28140107 + 0.5 NA intron (NR_134518, intron 4 of 16) intron (NR_134518, intron 4 of 16) -66374 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 197.5-13 chr12 29084018 29084499 + 0.5 NA Intergenic Intergenic -65020 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 159-4 chr1 88569564 88569920 + 0.5 NA intron (NR_110682, intron 2 of 3) intron (NR_110682, intron 2 of 3) -114402 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 193-34 chr3 98031905 98032596 + 0.5 NA intron (NM_001105580, intron 2 of 9) MER63B|DNA|hAT-Blackjack 3054 NM_001105580 200959 Hs.534578 NM_001105580 ENSG00000183185 GABRR3 - gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene) protein-coding 215.75-43 chr8 136340555 136341047 + 0.5 NA Intergenic L1ME2|LINE|L1 -189997 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 155-61 chr3 145170097 145170684 + 0.5 NA Intergenic Intergenic 898795 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 236-23 chr3 88375620 88376304 + 0.5 NA intron (NM_001368167, intron 2 of 2) intron (NM_001368167, intron 2 of 2) 37506 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 208.5-15 chr12 126989030 126989862 + 0.5 NA intron (NR_104646, intron 3 of 6) intron (NR_104646, intron 3 of 6) 70951 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LINC02405 - long intergenic non-protein coding RNA 2405 ncRNA 229.75-3 chr1 239292656 239293324 + 0.5 NA Intergenic L1MEc|LINE|L1 -93578 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 175.25-22 chr14 60569561 60569984 + 0.5 NA Intergenic AluJb|SINE|Alu 60626 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 232.5-31 chr3 178696699 178697551 + 0.5 NA intron (NM_001278911, intron 1 of 4) L1PA13|LINE|L1 138275 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 203.75-10 chr2 14185959 14186646 + 0.5 NA Intergenic MIRb|SINE|MIR 214656 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 153-16 chr12 57912561 57913139 + 0.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -16368 NR_148947 283387 Hs.727244 NR_148947 ENSG00000245651 LOC283387 - uncharacterized LOC283387 ncRNA 149.75-48 chr20 57739012 57739417 + 0.5 NA Intergenic Intergenic -27678 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 174.25-20 chr15 45436576 45437243 + 0.5 NA Intergenic Intergenic 3859 NR_030599 100126311 NR_030599 ENSG00000284386 MIR147B MIRN147B|mir-147b microRNA 147b ncRNA 194.5-2 chr1 90090863 90091494 + 0.5 NA Intergenic Intergenic 96068 NM_001320185 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 160-61 chr4 79440284 79440621 + 0.5 NA Intergenic L1MA8|LINE|L1 -32224 NM_033214 2712 Hs.98008 NM_033214 ENSG00000196475 GK2 GKP2|GKTA glycerol kinase 2 protein-coding 178-16 chr13 48993181 48993756 + 0.5 NA intron (NR_103528, intron 1 of 25) intron (NR_103528, intron 1 of 25) 16806 NR_103528 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 176-24 chr17 70944608 70945057 + 0.5 NA Intergenic Intergenic 257347 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 203.75-28 chr4 48355912 48356462 + 0.5 NA intron (NM_020846, intron 1 of 7) intron (NM_020846, intron 1 of 7) 14658 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 194-40 chr5 28492611 28493310 + 0.5 NA Intergenic Intergenic -205295 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 148.75-27 chr14 45276100 45276591 + 0.5 NA Intergenic Intergenic -23143 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 163.25-49 chr3 54553437 54553864 + 0.5 NA intron (NM_018398, intron 5 of 37) intron (NM_018398, intron 5 of 37) 86207 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 149.25-38 chr17 56262393 56262751 + 0.5 NA intron (NM_001370326, intron 3 of 20) intron (NM_001370326, intron 3 of 20) 109097 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 224-18 chr20 17958051 17958866 + 0.5 NA intron (NM_001282454, intron 1 of 12) intron (NM_001282454, intron 1 of 12) 4488 NR_003045 692086 Hs.680747 NR_003045 ENSG00000212232 SNORD17 HBI-43 small nucleolar RNA, C/D box 17 snoRNA 167.75-17 chr12 66301531 66302033 + 0.5 NA promoter-TSS (NR_135080) promoter-TSS (NR_135080) -711 NM_001370285 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 165.5-4 chr1 82876325 82876829 + 0.5 NA Intergenic Intergenic -26606 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 149.75-97 chr8 76581574 76582087 + 0.5 NA Intergenic Intergenic -99417 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 156.75-97 chr8 77607974 77608448 + 0.5 NA Intergenic Intergenic 157514 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 188.25-8 chr11 91089851 91090469 + 0.5 NA Intergenic Intergenic -220958 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 158-19 chr12 106454604 106455080 + 0.5 NA intron (NM_001160708, intron 20 of 27) intron (NM_001160708, intron 20 of 27) 96760 NM_001160708 55703 Hs.62696 NM_018082 ENSG00000013503 POLR3B C128|HLD8|INMAP|RPC2 RNA polymerase III subunit B protein-coding 193.75-42 chr3 151843100 151843543 + 0.5 NA intron (NR_110203, intron 1 of 2) intron (NR_110203, intron 1 of 2) 29205 NM_001086 13 Hs.506908 NM_001086 ENSG00000114771 AADAC CES5A1|DAC arylacetamide deacetylase protein-coding 159-14 chr11 45954345 45954783 + 0.5 NA intron (NR_147890, intron 9 of 18) intron (NR_147890, intron 9 of 18) 31908 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding 178.75-70 chr8 110940885 110941432 + 0.5 NA intron (NR_125417, intron 5 of 5) L1ME2|LINE|L1 86275 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 170.5-57 chr4 93063177 93063634 + 0.5 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 759006 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 189.25-35 chr3 99855309 99856036 + 0.5 NA intron (NM_001042459, intron 4 of 4) intron (NM_001042459, intron 4 of 4) 20501 NM_001370247 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 166.5-83 chr7 89511106 89511626 + 0.5 NA Intergenic Intergenic -608034 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 188.75-48 chr4 101099199 101099709 + 0.5 NA intron (NM_001130691, intron 4 of 12) intron (NM_001130691, intron 4 of 12) 141418 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 146.25-70 chr4 30546839 30547403 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -173248 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 219.5-3 chr11 73254035 73254860 + 0.5 NA Intergenic AluSx3|SINE|Alu -10058 NM_176796 5031 Hs.16362 NM_004154 ENSG00000171631 P2RY6 P2Y6 pyrimidinergic receptor P2Y6 protein-coding 185.5-73 chr8 117369023 117369637 + 0.5 NA Intergenic L1ME2z|LINE|L1 -151383 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 147.25-36 chr15 69847385 69847840 + 0.5 NA Intergenic MLT1L|LTR|ERVL-MaLR 12378 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 169.75-46 chr21 31100348 31100865 + 0.5 NA Intergenic Intergenic 60334 NM_001353685 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 167.5-44 chr2 118434453 118434810 + 0.5 NA Intergenic Intergenic 168335 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 171.25-14 chr12 40671122 40671634 + 0.5 NA Intergenic L3|LINE|CR1 -21061 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 156-90 chr8 54608630 54609015 + 0.5 NA Intergenic Intergenic -7274 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 196-3 chr1 188348976 188349564 + 0.5 NA Intergenic L1MD2|LINE|L1 905642 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 161-71 chr5 93840300 93840866 + 0.5 NA intron (NM_032042, intron 7 of 10) L2|LINE|L2 -98983 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 162.25-16 chr14 43040247 43040725 + 0.5 NA Intergenic (TAAT)n|Simple_repeat|Simple_repeat 1433630 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 185.75-73 chr6 150676013 150676693 + 0.5 NA intron (NM_001029884, intron 2 of 16) intron (NM_001029884, intron 2 of 16) -7294 NM_001329798 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 212.75-32 chr7 92017546 92018048 + 0.5 NA intron (NM_147185, intron 12 of 49) intron (NM_147185, intron 12 of 49) 76922 NM_005751 10142 Hs.651221 NM_005751 ENSG00000127914 AKAP9 AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO A-kinase anchoring protein 9 protein-coding 191.75-50 chr5 142091012 142091648 + 0.5 NA Intergenic L1MB5|LINE|L1 -17449 NM_030571 80762 Hs.9788 NM_030571 ENSG00000131507 NDFIP1 N4WBP5 Nedd4 family interacting protein 1 protein-coding 159.75-101 chr9 33032379 33032836 + 0.5 NA intron (NM_001539, intron 5 of 8) intron (NM_001539, intron 5 of 8) 7334 NM_001539 3301 Hs.445203 NM_001539 ENSG00000086061 DNAJA1 DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2 DnaJ heat shock protein family (Hsp40) member A1 protein-coding 149.25-77 chr4 75574893 75575321 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR 19041 NR_046430 152816 Hs.24510 NM_178497 ENSG00000174792 ODAPH AI2A4|C4orf26 odontogenesis associated phosphoprotein protein-coding 184.75-5 chr1 88405126 88405614 + 0.5 NA Intergenic MIRb|SINE|MIR -278774 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 149.25-102 chr8 13979385 13979979 + 0.5 NA Intergenic Intergenic 349992 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 225-10 chr2 149680597 149681176 + 0.5 NA intron (NR_110240, intron 1 of 2) intron (NR_110240, intron 1 of 2) -93111 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD metabolism of cobalamin associated D protein-coding 151.25-98 chr8 127758815 127759285 + 0.5 NA Intergenic AluSz|SINE|Alu 22819 NM_002467 4609 Hs.202453 NM_002467 ENSG00000136997 MYC MRTL|MYCC|bHLHe39|c-Myc MYC proto-oncogene, bHLH transcription factor protein-coding 153.25-2 chr1 24169661 24170086 + 0.5 NA intron (NM_173065, intron 2 of 5) MIRb|SINE|MIR 17416 NM_173065 163702 Hs.221375 NM_170743 ENSG00000185436 IFNLR1 CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2 interferon lambda receptor 1 protein-coding 168.25-59 chr5 117043069 117043507 + 0.5 NA Intergenic Intergenic -281079 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 275.75-13 chr5 52468098 52468891 + 0.5 NA Intergenic Intergenic -319422 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 194.25-33 chr4 113518136 113518817 + 0.5 NA intron (NM_001221, intron 8 of 18) intron (NM_001221, intron 8 of 18) 225637 NM_001354279 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 151.5-96 chr8 38374255 38374811 + 0.5 NA intron (NM_023034, intron 1 of 23) FLAM_A|SINE|Alu 7738 NM_023034 54904 Hs.434966 NM_017778 ENSG00000147548 NSD3 KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328 nuclear receptor binding SET domain protein 3 protein-coding 147.25-33 chr14 84539756 84540154 + 0.5 NA Intergenic Intergenic -731977 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 177.25-33 chr2 44504863 44505488 + 0.5 NA intron (NM_024766, intron 3 of 10) MSTB1|LTR|ERVL-MaLR 143228 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 154.5-36 chr16 69341039 69341480 + 0.5 NA exon (NM_016101, exon 4 of 5) exon (NM_016101, exon 4 of 5) 1487 NM_016101 51388 Hs.585728 NM_016101 ENSG00000132603 NIP7 CGI-37|HSPC031|KD93 nucleolar pre-rRNA processing protein NIP7 protein-coding 156.25-110 chrX 72103834 72104292 + 0.5 NA intron (NM_001013627, intron 1 of 7) Charlie4a|DNA|hAT-Charlie 27852 NM_001024455 340526 Hs.512180 NM_001024455 ENSG00000242732 RTL5 6430402L03Rik|MAR5|MART5|RGAG4|SIRH8 retrotransposon Gag like 5 protein-coding 176.75-61 chr4 33281444 33282045 + 0.5 NA Intergenic Intergenic 758149 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 146-60 chr4 66704373 66704748 + 0.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 427736 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 151.75-104 chr8 47988531 47988992 + 0.5 NA Intergenic AluSx|SINE|Alu -19670 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 234.75-24 chr6 143127193 143127989 + 0.5 NA intron (NM_001366358, intron 1 of 5) intron (NM_001366358, intron 1 of 5) 1452 NM_001366358 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 177.75-17 chr14 66007767 66008227 + 0.5 NA Intergenic L2a|LINE|L2 -478374 NR_110307 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 165.75-102 chr8 79176497 79177028 + 0.5 NA Intergenic MamRep1894|DNA|hAT -155426 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 150.25-33 chr14 53237642 53238209 + 0.5 NA Intergenic MLT1L|LTR|ERVL-MaLR 84571 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 194-32 chr3 190935217 190935803 + 0.5 NA Intergenic L1MD2|LINE|L1 57580 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 160.5-116 chr8 131456715 131457147 + 0.5 NA Intergenic Intergenic -416022 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 173.25-4 chr10 56205250 56205629 + 0.5 NA Intergenic Intergenic 155820 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 157.25-26 chr14 96385272 96385781 + 0.5 NA exon (NM_001271905, exon 4 of 4) exon (NM_001271905, exon 4 of 4) -6602 NM_001350888 122481 Hs.667462 NM_152327 ENSG00000140057 AK7 AK 7|SPGF27 adenylate kinase 7 protein-coding 185-33 chr2 6363317 6363841 + 0.5 NA Intergenic Intergenic 11843 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 148.75-54 chr2 185354363 185354851 + 0.5 NA Intergenic Intergenic -187535 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 171-49 chr4 136449039 136449677 + 0.5 NA Intergenic Intergenic -535678 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 176.25-24 chr13 85343767 85344179 + 0.5 NA Intergenic L2|LINE|L2 -19630 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 147.5-79 chr5 73615140 73615502 + 0.5 NA Intergenic MER5B|DNA|hAT-Charlie -10837 NM_001177693 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 154.75-25 chr15 65755407 65755765 + 0.5 NA intron (NM_005848, intron 3 of 31) AluJr|SINE|Alu -36254 NR_039736 100616379 NR_039736 ENSG00000264737 MIR4511 mir-4511 microRNA 4511 ncRNA 156-31 chr17 12294464 12294953 + 0.5 NA Intergenic Intergenic 212809 NR_030613 100126313 NR_030613 ENSG00000266297 MIR744 MIRN744|hsa-mir-744|mir-744 microRNA 744 ncRNA 195.75-41 chr22 20837014 20837776 + 0.5 NA intron (NM_058004, intron 2 of 54) AluJr|SINE|Alu 21416 NM_058004 5297 Hs.529438 NM_002650 ENSG00000241973 PI4KA PI4K-ALPHA|PIK4CA|PMGYCHA|pi4K230 phosphatidylinositol 4-kinase alpha protein-coding 180-52 chr5 66837651 66838331 + 0.5 NA intron (NM_015183, intron 1 of 27) intron (NM_015183, intron 1 of 27) 9218 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 172-83 chr8 61959829 61960459 + 0.5 NA Intergenic Intergenic 70305 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 268-6 chr13 100157193 100158063 + 0.5 NA intron (NR_148031, intron 6 of 22) intron (NR_148031, intron 6 of 22) 68535 NM_001352606 5095 Hs.80741 NM_000282 ENSG00000175198 PCCA - propionyl-CoA carboxylase subunit alpha protein-coding 162.75-80 chr7 106719638 106720019 + 0.5 NA Intergenic L2|LINE|L2 -58670 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 170.75-11 chr12 10130874 10131449 + 0.5 NA promoter-TSS (NM_022570) promoter-TSS (NM_022570) -892 NM_197947 64581 Hs.143929 NM_022570 ENSG00000172243 CLEC7A BGR|CANDF4|CD369|CLECSF12|DECTIN1|SCARE2 C-type lectin domain containing 7A protein-coding 171-31 chr2 27760951 27761456 + 0.5 NA Intergenic LTR103b_Mam|LTR|ERV1? -10514 NM_145330 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 213.5-22 chr2 18631162 18631712 + 0.5 NA Intergenic L2c|LINE|L2 -41857 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 161.5-78 chr5 129666152 129666730 + 0.5 NA intron (NM_133638, intron 16 of 22) intron (NM_133638, intron 16 of 22) -81653 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 163.5-6 chr1 105813639 105814277 + 0.5 NA Intergenic L1MA1|LINE|L1 -195023 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 180.75-51 chr5 83226511 83227162 + 0.5 NA intron (NM_001318012, intron 6 of 7) intron (NM_001318012, intron 6 of 7) 149289 NM_001318012 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 168.5-47 chr2 39268028 39268446 + 0.5 NA intron (NM_003618, intron 26 of 33) intron (NM_003618, intron 26 of 33) -24254 NR_144521 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 160.25-69 chr7 20540231 20540715 + 0.5 NA Intergenic L1PA10|LINE|L1 -75194 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 162.25-74 chr5 99684586 99685206 + 0.5 NA Intergenic Intergenic 150906 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 158.25-84 chr5 42495326 42495812 + 0.5 NA intron (NM_001242401, intron 2 of 10) intron (NM_001242401, intron 2 of 10) -52474 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 162.25-69 chr5 13240466 13240961 + 0.5 NA Intergenic Intergenic -207827 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 223.25-5 chr10 83024043 83024560 + 0.5 NA Intergenic AluSx3|SINE|Alu 652788 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 176.75-65 chr4 81337791 81338375 + 0.5 NA Intergenic THE1D|LTR|ERVL-MaLR -122861 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 199-34 chr6 163536276 163536750 + 0.5 NA intron (NM_206853, intron 4 of 6) Tigger2a|DNA|TcMar-Tigger 121795 NM_206853 9444 Hs.510324 NM_006775 ENSG00000112531 QKI Hqk|QK|QK1|QK3|hqkI QKI, KH domain containing RNA binding protein-coding 153.5-41 chr17 82887576 82887954 + 0.5 NA intron (NM_005993, intron 15 of 38) L1ME1|LINE|L1 -47743 NM_024702 79755 Hs.464391 NM_024702 ENSG00000141579 ZNF750 ZFP750 zinc finger protein 750 protein-coding 163.75-20 chr12 10648931 10649390 + 0.5 NA intron (NM_018423, intron 1 of 10) L1MC5|LINE|L1 24892 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 163-83 chr8 116373632 116374167 + 0.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR -48840 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 202.25-26 chr17 77881993 77882473 + 0.5 NA non-coding (NR_028337, exon 2 of 2) non-coding (NR_028337, exon 2 of 2) 1854 NR_028337 400624 Hs.514521 NM_001001685 ENSG00000204283 LINC01973 - long intergenic non-protein coding RNA 1973 ncRNA 149.75-25 chr14 53665379 53665741 + 0.5 NA Intergenic Intergenic 282924 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 170.75-56 chr5 103882054 103882699 + 0.5 NA Intergenic Intergenic -319587 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 172.5-85 chr8 136828920 136829563 + 0.5 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 298443 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 146-26 chr15 98709247 98709728 + 0.5 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) -58266 NR_126453 104472848 Hs.349049 NR_126453 IRAIN IGF1R-AS IGF1R antisense imprinted non-protein coding RNA ncRNA 216-9 chr10 102341125 102341637 + 0.5 NA intron (NM_001199378, intron 3 of 39) L1ME1|LINE|L1 -52729 NM_001322935 4791 Hs.73090 NM_002502 ENSG00000077150 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52 nuclear factor kappa B subunit 2 protein-coding 206-21 chr3 13310949 13311638 + 0.5 NA Intergenic AluY|SINE|Alu 109029 NM_024923 23225 Hs.475525 NM_024923 ENSG00000132182 NUP210 GP210|POM210 nucleoporin 210 protein-coding 180-56 chr5 159178515 159179072 + 0.5 NA intron (NM_001199383, intron 4 of 10) Tigger4a|DNA|TcMar-Tigger 28855 NM_001199382 153830 Hs.349306 NM_144726 ENSG00000145860 RNF145 - ring finger protein 145 protein-coding 150.25-91 chr6 101606720 101607199 + 0.5 NA intron (NM_001166247, intron 1 of 16) intron (NM_001166247, intron 1 of 16) 207974 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 152-87 chr6 164823018 164823338 + 0.5 NA Intergenic L1MA2|LINE|L1 -1115 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 148.5-8 chr1 189258172 189258597 + 0.5 NA Intergenic Intergenic 1217626 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 187.25-21 chr14 46258872 46259273 + 0.5 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) 194913 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 161.5-65 chr3 188006324 188006837 + 0.5 NA Intergenic L2b|LINE|L2 -30173 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 171.5-66 chr3 134547818 134548424 + 0.5 NA intron (NM_001353110, intron 9 of 12) L2|LINE|L2 61948 NM_001353124 80254 Hs.443301 NM_025180 ENSG00000182923 CEP63 SCKL6 centrosomal protein 63 protein-coding 216.75-35 chr8 121812513 121813216 + 0.5 NA Intergenic Intergenic -171424 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 167-22 chr14 48634789 48635156 + 0.5 NA Intergenic Intergenic -839958 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 207.25-6 chr10 15125008 15125722 + 0.5 NA intron (NM_001308295, intron 9 of 12) intron (NM_001308295, intron 9 of 12) 28010 NM_183005 10557 Hs.94986 NM_006414 ENSG00000152464 RPP38 - ribonuclease P/MRP subunit p38 protein-coding 218.75-17 chr4 38668325 38668869 + 0.5 NA intron (NM_016531, intron 1 of 5) intron (NM_016531, intron 1 of 5) -3969 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 264.75-14 chr5 101578730 101579432 + 0.5 NA Intergenic Intergenic -675799 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 202.5-52 chr5 167968935 167969509 + 0.5 NA intron (NM_001368145, intron 3 of 26) THE1B|LTR|ERVL-MaLR -196623 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 149.75-92 chr7 54994575 54995169 + 0.5 NA Intergenic Tigger15a|DNA|TcMar-Tigger -24145 NM_005228 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 168.25-56 chr5 30806884 30807381 + 0.5 NA Intergenic L2|LINE|L2 -386554 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 203.25-23 chr2 157955934 157956564 + 0.5 NA Intergenic L1MB7|LINE|L1 -38930 NM_001135098 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 152-41 chr2 140717540 140718113 + 0.5 NA intron (NM_018557, intron 35 of 90) Plat_L3|LINE|CR1 -131141 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 172.5-55 chr4 20894182 20894747 + 0.5 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -11754 NM_025221 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 221-10 chr12 121663806 121664489 + 0.5 NA intron (NM_173855, intron 1 of 5) MLT1K|LTR|ERVL-MaLR 5507 NM_173855 283385 Hs.434154 NM_173855 ENSG00000139714 MORN3 - MORN repeat containing 3 protein-coding 225 chr1 198793195 198793725 + 0.5 NA Intergenic Intergenic 65522 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 151.75-40 chr17 73716704 73717218 + 0.5 NA Intergenic L1ME4a|LINE|L1 -20893 NM_001278587 100134391 Hs.694655 NM_001278587 LOC100134391 - uncharacterized LOC100134391 protein-coding 164-57 chr4 76520441 76521050 + 0.5 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) -52823 NR_039654 100616299 NR_039654 ENSG00000263445 MIR4450 mir-4450 microRNA 4450 ncRNA 145.75-60 chr2 183182518 183182958 + 0.5 NA Intergenic AluJr4|SINE|Alu 58295 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 163.25-51 chr3 196894477 196895008 + 0.5 NA intron (NM_152699, intron 2 of 9) intron (NM_152699, intron 2 of 9) 26822 NM_152699 205564 Hs.240770 NM_152699 ENSG00000119231 SENP5 - SUMO specific peptidase 5 protein-coding 176.25-50 chr4 134887144 134887636 + 0.5 NA Intergenic Intergenic 236169 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 221-12 chr13 92663860 92664302 + 0.5 NA intron (NM_004466, intron 7 of 7) AluSx|SINE|Alu 55874 NR_049776 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 189.5-70 chr8 81618834 81619267 + 0.5 NA intron (NR_146081, intron 6 of 7) Tigger13a|DNA|TcMar-Tigger 12227 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 180.5-64 chr6 143027670 143028204 + 0.5 NA intron (NR_038987, intron 1 of 2) L1ME3G|LINE|L1 9645 NR_038987 100507489 Hs.486645 NR_038987 LINC01277 - long intergenic non-protein coding RNA 1277 ncRNA 153-46 chr20 5731670 5732162 + 0.5 NA Intergenic Intergenic -18471 NM_001303477 149840 Hs.529340 NM_152504 ENSG00000171984 SHLD1 C20orf196|RINN3 shieldin complex subunit 1 protein-coding 187.75-76 chr9 13231819 13232251 + 0.5 NA intron (NM_003829, intron 3 of 45) L1ME3A|LINE|L1 47529 NM_003829 8777 Hs.169378 NM_003829 ENSG00000107186 MPDZ HYC2|MUPP1 multiple PDZ domain crumbs cell polarity complex component protein-coding 192.25-23 chr15 94885033 94885681 + 0.5 NA Intergenic L1M5|LINE|L1 29994 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 308.25-2 chr14 68452335 68453316 + 0.5 NA intron (NM_133509, intron 9 of 10) MIRb|SINE|MIR 175962 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 162.75-70 chr6 74325775 74326333 + 0.5 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 256603 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 182.5-39 chr3 35008204 35008712 + 0.5 NA intron (NR_110817, intron 2 of 3) L2a|LINE|L2 385565 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 186-4 chr10 44161476 44162173 + 0.5 NA Intergenic L1M4|LINE|L1 -130926 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 151.25-54 chr21 28485934 28486530 + 0.5 NA Intergenic Intergenic -53086 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 186.75-4 chr1 173268682 173269202 + 0.5 NA intron (NR_037845, intron 2 of 2) intron (NR_037845, intron 2 of 2) -61611 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 160.75-102 chr7 114064223 114064575 + 0.5 NA Intergenic Intergenic -21928 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 157-19 chr10 112335427 112335988 + 0.5 NA intron (NR_028134, intron 10 of 18) intron (NR_028134, intron 10 of 18) 20888 NR_028134 390003 Hs.534691 NR_028134 ENSG00000243316 GUCY2GP GUCY2G guanylate cyclase 2G, pseudogene pseudo 198-40 chr6 140790638 140791088 + 0.5 NA Intergenic Intergenic 107049 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 158.25-101 chr7 37313994 37314434 + 0.5 NA intron (NM_001206480, intron 4 of 21) intron (NM_001206480, intron 4 of 21) 39454 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 152.25-27 chr14 61046460 61047000 + 0.5 NA intron (NR_033344, intron 12 of 16) intron (NR_033344, intron 12 of 16) -65040 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 166.75-18 chr12 27802235 27802832 + 0.5 NA 3' UTR (NM_020782, exon 3 of 3) 3' UTR (NM_020782, exon 3 of 3) 22300 NM_020782 57542 Hs.505104 NM_020782 ENSG00000087448 KLHL42 Ctb9|KLHDC5 kelch like family member 42 protein-coding 191.5-41 chr4 130044453 130044940 + 0.5 NA Intergenic Tigger15a|DNA|TcMar-Tigger 273077 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 191.75-62 chr7 146347460 146348161 + 0.5 NA Intergenic AluSx1|SINE|Alu -426461 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 181.25-57 chr8 82159490 82160192 + 0.5 NA Intergenic Intergenic -317555 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 252.75-11 chr17 58044647 58045289 + 0.5 NA Intergenic Intergenic -37622 NR_034041 6426 Hs.68714 NM_006924 ENSG00000136450 SRSF1 ASF|SF2|SF2p33|SFRS1|SRp30a serine and arginine rich splicing factor 1 protein-coding 173.75-4 chr1 109097084 109097501 + 0.5 NA TTS (NR_136243) TTS (NR_136243) -2901 NR_003023 677766 Hs.550815 NR_003023 ENSG00000278249 SCARNA2 HBII-382|mgU2-25/61 small Cajal body-specific RNA 2 ncRNA 185.75-87 chr8 137655910 137656411 + 0.5 NA Intergenic L2c|LINE|L2 -242572 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 159.25-56 chr4 23383253 23383738 + 0.5 NA Intergenic Intergenic 497797 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 208.25-12 chr11 24524866 24525341 + 0.5 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 28050 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 187.25-35 chr2 39981107 39981551 + 0.5 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 63695 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 155.25-75 chr5 121089826 121090213 + 0.5 NA Intergenic Intergenic -232531 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 243.75 chr10 72758579 72759217 + 0.5 NA intron (NR_073062, intron 3 of 9) intron (NR_073062, intron 3 of 9) 37869 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 205.75-51 chr6 147573044 147573698 + 0.5 NA Intergenic THE1D|LTR|ERVL-MaLR 64681 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 233.25-10 chr12 26349076 26349691 + 0.5 NA intron (NM_002223, intron 55 of 56) intron (NM_002223, intron 55 of 56) 153810 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 175.5-13 chr11 4156544 4157144 + 0.5 NA Intergenic Intergenic -30308 NR_047550 100506082 Hs.445705 NR_047550 ENSG00000254480 LINC02749 - long intergenic non-protein coding RNA 2749 ncRNA 175.25-69 chr8 80614707 80615215 + 0.5 NA Intergenic Intergenic 128735 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 168-7 chr1 168018413 168018995 + 0.5 NA intron (NM_001198956, intron 11 of 21) intron (NM_001198956, intron 11 of 21) 20044 NR_031702 100313835 NR_031702 ENSG00000221545 MIR1255B2 MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2 microRNA 1255b-2 ncRNA 157-76 chr5 110545795 110546371 + 0.5 NA intron (NM_001039763, intron 11 of 13) intron (NM_001039763, intron 11 of 13) -32168 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 193-26 chr2 118653361 118653916 + 0.5 NA Intergenic L1MB5|LINE|L1 -50672 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 162.25-60 chr4 90104333 90104768 + 0.5 NA Intergenic Intergenic -22983 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 146.75-29 chr14 46543151 46543526 + 0.5 NA Intergenic Intergenic 71979 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 155.75-30 chr13 104078055 104078588 + 0.5 NA Intergenic L1M5|LINE|L1 653121 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 148.5-51 chr2 238672757 238673276 + 0.5 NA Intergenic L1ME3|LINE|L1 -117517 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 153.5-48 chr2 78139156 78139542 + 0.5 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) 50619 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 165-9 chr10 56694989 56695495 + 0.5 NA Intergenic Intergenic -333969 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 158-18 chr12 91852370 91852843 + 0.5 NA Intergenic L1MB8|LINE|L1 289107 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 169.5-78 chr6 76002438 76003051 + 0.5 NA intron (NM_001563, intron 12 of 16) intron (NM_001563, intron 12 of 16) 69918 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 150.25-107 chrX 13870175 13870552 + 0.5 NA intron (NM_001318729, intron 1 of 6) MER5A|DNA|hAT-Charlie -53004 NM_001001996 2824 Hs.495710 NM_005278 ENSG00000046653 GPM6B M6B glycoprotein M6B protein-coding 193.5-31 chr18 915934 916431 + 0.5 NA Intergenic Intergenic 10816 NM_001117 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 225.75-11 chr16 47596788 47597443 + 0.5 NA intron (NM_001031835, intron 14 of 31) intron (NM_001031835, intron 14 of 31) 135784 NM_001031835 5257 Hs.78060 NM_000293 ENSG00000102893 PHKB - phosphorylase kinase regulatory subunit beta protein-coding 151-62 chr3 81964236 81964787 + 0.5 NA Intergenic Intergenic -21631 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 174.5-55 chr4 6990271 6990962 + 0.5 NA intron (NM_001286805, intron 1 of 11) intron (NM_001286805, intron 1 of 11) 3108 NM_001286805 57533 Hs.518611 NM_020773 ENSG00000132405 TBC1D14 - TBC1 domain family member 14 protein-coding 157.5-65 chr4 36539798 36540327 + 0.5 NA intron (NR_149124, intron 3 of 4) intron (NR_149124, intron 3 of 4) 101838 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 162.75-54 chr4 48633148 48633758 + 0.5 NA intron (NM_015030, intron 4 of 63) L2a|LINE|L2 143201 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 155.75-41 chr16 24887808 24888354 + 0.5 NA intron (NM_001352247, intron 8 of 14) L1M6|LINE|L1 41850 NM_052944 115584 Hs.164118 NM_052944 ENSG00000158865 SLC5A11 KST1|RKST1|SGLT6|SMIT2 solute carrier family 5 member 11 protein-coding 179.25-42 chr2 162098284 162098750 + 0.5 NA Intergenic MIRb|SINE|MIR -15924 NR_110255 101929532 Hs.639883 NR_110255 ENSG00000236841 LOC101929532 - uncharacterized LOC101929532 ncRNA 157-106 chrX 45242132 45242716 + 0.5 NA Intergenic L1ME2z|LINE|L1 -41548 NM_176819 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 217.75-24 chr20 32177750 32178584 + 0.5 NA Intergenic L1MB3|LINE|L1 12193 NR_002781 128854 Hs.647447 NR_002781 ENSG00000235217 TSPY26P TSPYL3|bA392M18.1 testis specific protein Y-linked 26, pseudogene pseudo 177 chr1 41921636 41922302 + 0.5 NA intron (NR_038261, intron 1 of 3) L1M6|LINE|L1 -3047 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 148.25-79 chr6 124336143 124336631 + 0.5 NA intron (NM_001040214, intron 2 of 6) MLT1L|LTR|ERVL-MaLR 53382 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 162-67 chr6 25850062 25850467 + 0.5 NA intron (NM_006632, intron 7 of 11) intron (NM_006632, intron 7 of 11) -18212 NM_005074 6568 Hs.205816 NM_005074 ENSG00000124568 SLC17A1 NAPI-1|NPT-1|NPT1 solute carrier family 17 member 1 protein-coding 199.25-57 chr6 75667490 75668065 + 0.5 NA intron (NM_001100409, intron 9 of 22) intron (NM_001100409, intron 9 of 22) 65897 NM_015571 26054 Hs.485784 NM_015571 ENSG00000112701 SENP6 SSP1|SUSP1 SUMO specific peptidase 6 protein-coding 160-26 chr16 56032832 56033286 + 0.5 NA Intergenic L1MD1|LINE|L1 -77028 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 147.75-104 chr7 86930657 86931233 + 0.5 NA intron (NM_001291991, intron 7 of 20) L2c|LINE|L2 34954 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 148.75-6 chr1 210532123 210532676 + 0.5 NA intron (NM_001122834, intron 9 of 11) intron (NM_001122834, intron 9 of 11) 203033 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 165.5-18 chr11 26153307 26153804 + 0.5 NA Intergenic Charlie5|DNA|hAT-Charlie -35568 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 163.25-88 chr8 139087951 139088565 + 0.5 NA Intergenic Intergenic -174217 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 146-96 chr8 110400141 110400504 + 0.5 NA Intergenic Intergenic -424551 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 184.75-22 chr13 93072410 93072903 + 0.5 NA Intergenic AluJo|SINE|Alu 27315 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 152.25-53 chr2 228887601 228887997 + 0.5 NA Intergenic L1MEb|LINE|L1 -276404 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 177-11 chr11 19033997 19034580 + 0.5 NA Intergenic L1MC2|LINE|L1 25729 NM_001303615 117194 Hs.350566 NM_054030 ENSG00000183695 MRGPRX2 MGRG3|MRGX2 MAS related GPR family member X2 protein-coding 172.75-26 chr16 3420985 3421476 + 0.5 NA Intergenic L1PA14|LINE|L1 20015 NM_001347870 7727 Hs.155204 NM_003450 ENSG00000103343 ZNF174 ZSCAN8 zinc finger protein 174 protein-coding 147.75-57 chr2 187058597 187059107 + 0.5 NA Intergenic L1MEj|LINE|L1 -209682 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 159.75-14 chr10 62712315 62712804 + 0.5 NA Intergenic L1PA3|LINE|L1 -92161 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 179.75-54 chr6 151987442 151987885 + 0.5 NA intron (NM_001122741, intron 5 of 8) AluJo|SINE|Alu 178556 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 189.25-41 chr5 113689036 113689770 + 0.5 NA Intergenic Intergenic 175709 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 151.75-42 chr18 20561901 20562439 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 549643 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 165.5-80 chr6 75428958 75429483 + 0.5 NA TTS (NR_039670) TTS (NR_039670) 813 NR_039670 100616389 NR_039670 ENSG00000263533 MIR4463 - microRNA 4463 ncRNA 157-81 chr6 56519835 56520451 + 0.5 NA intron (NM_001144770, intron 61 of 94) L1MDa|LINE|L1 122746 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 151.5-61 chr22 32924280 32924767 + 0.5 NA intron (NM_003490, intron 4 of 13) MER5A1|DNA|hAT-Charlie 82298 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 199.75-3 chr1 109541737 109542248 + 0.5 NA intron (NM_031936, intron 1 of 2) intron (NM_031936, intron 1 of 2) 2120 NM_031936 83873 Hs.709782 NM_031936 ENSG00000156097 GPR61 BALGR|GPCR3 G protein-coupled receptor 61 protein-coding 150.5-26 chr11 29215265 29215713 + 0.5 NA Intergenic Intergenic -378924 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 147.75-94 chr6 67017393 67017734 + 0.5 NA Intergenic L1MA3|LINE|L1 -1037788 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 165-2 chr1 64795126 64795623 + 0.5 NA intron (NM_001366165, intron 5 of 11) L1ME1|LINE|L1 50299 NM_018211 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 158.75-27 chr14 83211435 83212045 + 0.5 NA Intergenic L1ME1|LINE|L1 569108 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 169.25-9 chr12 38683426 38683887 + 0.5 NA intron (NM_153634, intron 16 of 19) intron (NM_153634, intron 16 of 19) 221935 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 147-87 chr5 59282838 59283334 + 0.5 NA intron (NM_001165899, intron 3 of 16) MIR|SINE|MIR -6971 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 198.25-4 chr10 66379533 66380105 + 0.5 NA intron (NM_001127384, intron 11 of 17) intron (NM_001127384, intron 11 of 17) -546217 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 160.75-86 chr4 124501639 124502247 + 0.5 NA intron (NR_110838, intron 8 of 8) intron (NR_110838, intron 8 of 8) 56491 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 176.25-43 chr20 57994720 57995135 + 0.5 NA Intergenic MIRb|SINE|MIR -8977 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 158.5-105 chrX 67906343 67906783 + 0.5 NA Intergenic L1MA2|LINE|L1 361940 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 162.5-32 chr16 71202328 71202717 + 0.5 NA intron (NM_001198543, intron 1 of 18) intron (NM_001198543, intron 1 of 18) 28200 NM_001270974 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 167.25-83 chr9 17616868 17617520 + 0.5 NA intron (NM_003026, intron 1 of 8) L1ME4b|LINE|L1 38128 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 177-59 chr6 79960699 79961099 + 0.5 NA Intergenic L1M5|LINE|L1 -13346 NM_022726 6785 Hs.101915 NM_022726 ENSG00000118402 ELOVL4 ADMD|CT118|ISQMR|SCA34|STGD2|STGD3 ELOVL fatty acid elongase 4 protein-coding 191.25-64 chr9 14655936 14656481 + 0.5 NA intron (NR_148717, intron 8 of 11) intron (NR_148717, intron 8 of 11) 37224 NR_148717 340481 Hs.649522 NM_178566 ENSG00000175893 ZDHHC21 DHHC-21|DHHC21|DNZ1|HSPC097 zinc finger DHHC-type containing 21 protein-coding 159.5-36 chr19 45994222 45994758 + 0.5 NA promoter-TSS (NM_001267723) promoter-TSS (NM_001267723) -977 NM_001267723 729440 Hs.515479 NM_001080402 ENSG00000104983 CCDC61 - coiled-coil domain containing 61 protein-coding 189.75-31 chr18 7506596 7507159 + 0.5 NA Intergenic Intergenic -45871 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 157.5-105 chr8 90407851 90408218 + 0.5 NA Intergenic MER2|DNA|TcMar-Tigger 186546 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 236.25-32 chr7 3732735 3733447 + 0.5 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) -396594 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 223.25-36 chr8 119735413 119736036 + 0.5 NA intron (NM_003184, intron 25 of 25) intron (NM_003184, intron 25 of 25) -62334 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 204.75-12 chr12 49271601 49272169 + 0.5 NA intron (NM_001303116, intron 4 of 4) intron (NM_001303116, intron 4 of 4) 6803 NM_032704 84790 Hs.652390 NM_032704 ENSG00000167553 TUBA1C TUBA6|bcm948 tubulin alpha 1c protein-coding 158-45 chr21 17852763 17853359 + 0.5 NA intron (NR_024354, intron 1 of 2) intron (NR_024354, intron 1 of 2) 32547 NR_024354 54075 Hs.404306 NR_024354 CHODL-AS1 C21orf39|NCRNA00157 CHODL antisense RNA 1 ncRNA 190-45 chr4 96543442 96544106 + 0.5 NA intron (NR_147149, intron 2 of 3) MIR|SINE|MIR 233071 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 153-22 chr14 54983660 54984236 + 0.5 NA intron (NM_007086, intron 15 of 25) MER33|DNA|hAT-Charlie 43151 NM_007086 11169 Hs.385998 NM_007086 ENSG00000198554 WDHD1 AND-1|AND1|CHTF4|CTF4 WD repeat and HMG-box DNA binding protein 1 protein-coding 154.75-72 chr4 37379384 37379914 + 0.5 NA intron (NM_001144990, intron 3 of 6) MIRb|SINE|MIR -74276 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 218.5-34 chr6 38003406 38004116 + 0.5 NA intron (NM_021943, intron 2 of 5) AluSz|SINE|Alu 184034 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 145.75-40 chr17 58961334 58961838 + 0.5 NA intron (NR_048561, intron 2 of 5) intron (NR_048561, intron 2 of 5) 145294 NM_001353085 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 150.25-57 chr20 1065677 1066226 + 0.5 NA Intergenic Intergenic -47278 NM_178578 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 185.5-68 chr7 118861567 118862268 + 0.5 NA Intergenic L2|LINE|L2 637213 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 170.5-75 chr8 105861652 105862267 + 0.5 NA intron (NR_125796, intron 2 of 7) AluY|SINE|Alu 198544 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 349-3 chr2 212037188 212038411 + 0.5 NA intron (NM_001042599, intron 2 of 26) intron (NM_001042599, intron 2 of 26) 388561 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 204-42 chr8 63185500 63186185 + 0.5 NA intron (NR_102434, intron 3 of 3) intron (NR_102434, intron 3 of 3) 16839 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 147-33 chr17 72573001 72573481 + 0.5 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 19563 NR_036488 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 175.5-69 chr4 7976867 7977333 + 0.5 NA intron (NM_001130084, intron 19 of 19) THE1D|LTR|ERVL-MaLR 28281 NR_029511 407052 NR_029511 ENSG00000207807 MIR95 MIRN95|hsa-mir-95|miR-95 microRNA 95 ncRNA 218-11 chr2 6708902 6709566 + 0.5 NA Intergenic L1MB7|LINE|L1 -58715 NR_110497 102800314 Hs.258100 NR_110497 ENSG00000236172 MIR7515HG - MIR7515 host gene ncRNA 157-58 chr22 37458786 37459183 + 0.5 NA Intergenic Intergenic 27400 NM_002405 4242 Hs.517603 NM_002405 ENSG00000100060 MFNG - MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding 156.75-82 chr6 21157350 21157936 + 0.5 NA intron (NM_017774, intron 13 of 15) intron (NM_017774, intron 13 of 15) 354249 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 159.5-87 chr7 49834925 49835341 + 0.5 NA intron (NR_136188, intron 2 of 3) LTR56|LTR|ERV1 59800 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 211.5-21 chr18 2533749 2534263 + 0.5 NA Intergenic Intergenic 37499 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 160-37 chr2 18383745 18384242 + 0.5 NA Intergenic L1ME3G|LINE|L1 176660 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 182-27 chr2 58446776 58447478 + 0.5 NA Intergenic Intergenic -73626 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 194-3 chr1 190707211 190707663 + 0.5 NA intron (NR_033922, intron 1 of 4) intron (NR_033922, intron 1 of 4) 82547 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 153.25-100 chr5 176925706 176926162 + 0.5 NA intron (NR_146149, intron 10 of 15) L1ME2z|LINE|L1 -26588 NM_002115 3101 Hs.411695 NM_002115 ENSG00000160883 HK3 HKIII|HXK3 hexokinase 3 protein-coding 170.25-19 chr14 85857907 85858517 + 0.5 NA Intergenic AluSq2|SINE|Alu -76466 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 169.75-63 chr5 147440715 147441257 + 0.5 NA intron (NM_001197294, intron 1 of 13) MIRb|SINE|MIR 12706 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 212.25-24 chr2 107453897 107454579 + 0.5 NA Intergenic L1ME3A|LINE|L1 -75181 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 191.75-57 chr6 162770265 162770738 + 0.5 NA intron (NM_001080379, intron 1 of 4) intron (NM_001080379, intron 1 of 4) 42531 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 221.25-12 chr12 133053333 133053802 + 0.5 NA intron (NM_001127372, intron 4 of 4) AluJo|SINE|Alu 15985 NM_001289972 7637 Hs.445019 NM_003428 ENSG00000198040 ZNF84 HPF2 zinc finger protein 84 protein-coding 164.5-59 chr4 97416083 97416606 + 0.5 NA intron (NR_102713, intron 1 of 5) L1MB5|LINE|L1 49418 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 197.25-22 chr17 43465850 43466540 + 0.5 NA Intergenic Intergenic -17670 NR_136225 1659 Hs.463105 NM_004941 ENSG00000067596 DHX8 DDX8|Dhr2|HRH1|PRP22|PRPF22 DEAH-box helicase 8 protein-coding 190.5-51 chr5 99664841 99665592 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 131226 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 194.25-52 chr8 142656714 142657196 + 0.5 NA TTS (NM_003724) TTS (NM_003724) 13012 NM_001279352 8629 Hs.535903 NM_003724 ENSG00000234616 JRK JH8|jerky Jrk helix-turn-helix protein protein-coding 155.75-69 chr3 166187982 166188563 + 0.5 NA Intergenic L1PA11|LINE|L1 -350849 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 178.25-24 chr17 59342245 59342895 + 0.5 NA intron (NM_001005404, intron 1 of 4) intron (NM_001005404, intron 1 of 4) 10915 NM_001005404 388403 Hs.463613 NM_001005404 ENSG00000175155 YPEL2 FKSG4 yippee like 2 protein-coding 218.25-40 chr6 133536383 133537144 + 0.5 NA non-coding (NR_109982, exon 6 of 9) non-coding (NR_109982, exon 6 of 9) -284384 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 209-16 chr15 94888273 94888859 + 0.5 NA Intergenic Intergenic 33203 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 157.25-27 chr14_KI270722v1_random 170306 170877 + 0.5 NA NA Intergenic NA NA 198-4 chr10 74006155 74006675 + 0.5 NA intron (NM_014000, intron 1 of 21) intron (NM_014000, intron 1 of 21) 8299 NM_003373 7414 Hs.643896 NM_003373 ENSG00000035403 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 172-49 chr3 54645249 54645774 + 0.5 NA intron (NM_018398, intron 11 of 37) MER102c|DNA|hAT-Charlie -5654 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 225-29 chr8 112010548 112011224 + 0.5 NA Intergenic Intergenic -632607 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 147.5-63 chr3 117414751 117415274 + 0.5 NA Intergenic Intergenic 275913 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 181.25-58 chr8 122340038 122340552 + 0.5 NA Intergenic Intergenic 228349 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 149.5-93 chr8 72180640 72181219 + 0.5 NA Intergenic Intergenic 70705 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 182.75-34 chr2 45653155 45653572 + 0.5 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 1688 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 181.5-29 chr16 21097390 21098032 + 0.5 NA intron (NM_001347886, intron 17 of 61) intron (NM_001347886, intron 17 of 61) 53135 NM_001347886 55567 Hs.526500 NM_017539 ENSG00000158486 DNAH3 DNAHC3-B|DNAHC3B|HDHC8|HEL-36|HSADHC3 dynein axonemal heavy chain 3 protein-coding 163-3 chr1 89639170 89639580 + 0.5 NA intron (NM_032270, intron 1 of 2) intron (NM_032270, intron 1 of 2) 6255 NM_032270 84230 Hs.412836 NM_032270 ENSG00000171488 LRRC8C AD158|FAD158 leucine rich repeat containing 8 VRAC subunit C protein-coding 165.5-69 chr5 53666394 53666943 + 0.5 NA intron (NR_134474, intron 5 of 5) AluSz|SINE|Alu 106029 NR_134475 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 161-36 chr16 24323022 24323388 + 0.5 NA intron (NM_006539, intron 1 of 3) AluJb|SINE|Alu 67652 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 146.25-41 chr2 14478322 14478681 + 0.5 NA Intergenic L2a|LINE|L2 -77543 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 188.25-39 chr4 70248182 70248833 + 0.5 NA intron (NM_005212, intron 3 of 4) intron (NM_005212, intron 3 of 4) 5891 NM_005212 1448 Hs.54415 NM_005212 ENSG00000171209 CSN3 CNS10|CSN10|CSNK|KCA casein kappa protein-coding 167.75-61 chr4 33796647 33797258 + 0.5 NA Intergenic Intergenic 242941 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 157.25-77 chr5 113439464 113439900 + 0.5 NA intron (NM_001085377, intron 1 of 18) MIRb|SINE|MIR -4693 NM_032028 83942 Hs.519507 NM_032028 ENSG00000212122 TSSK1B FKSG81|SPOGA4|STK22D|TSK1|TSSK1 testis specific serine kinase 1B protein-coding 172-69 chr5 118980628 118981072 + 0.5 NA intron (NM_173666, intron 1 of 5) L1MB4|LINE|L1 6264 NR_036262 100422885 NR_036262 ENSG00000283498 MIR1244-2 - microRNA 1244-2 ncRNA 189.75-79 chr8 127029180 127029766 + 0.5 NA Intergenic L1MC1|LINE|L1 16319 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 255.25-12 chr18 12882133 12882715 + 0.5 NA intron (NM_080423, intron 1 of 8) Charlie4z|DNA|hAT-Charlie 1813 NM_002828 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 157.5-111 chr8 137232283 137232844 + 0.5 NA Intergenic Intergenic 181025 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 149.25-110 chr8 100543461 100543986 + 0.5 NA intron (NM_001270377, intron 1 of 4) intron (NM_001270377, intron 1 of 4) 16036 NM_001270379 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 149.25-61 chr3 38955984 38956347 + 0.5 NA intron (NM_001349253, intron 3 of 29) AluSg|SINE|Alu -5604 NM_014139 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 183.75-101 chrX 79722437 79722837 + 0.5 NA Intergenic MER50-int|LTR|ERV1 -292116 NM_001109879 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 153.25-15 chr1 207502367 207502820 + 0.5 NA intron (NM_000573, intron 1 of 38) L2c|LINE|L2 6436 NM_000573 1378 Hs.334019 NM_000573 ENSG00000203710 CR1 C3BR|C4BR|CD35|KN complement C3b/C4b receptor 1 (Knops blood group) protein-coding 164-18 chr14 98249147 98249744 + 0.5 NA Intergenic Intergenic -271321 NR_152746 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 153.5-104 chr8 18003826 18004309 + 0.5 NA intron (NM_001352648, intron 30 of 39) intron (NM_001352648, intron 30 of 39) 79129 NM_001363743 427 Hs.527412 NM_004315 ENSG00000104763 ASAH1 AC|ACDase|ASAH|PHP|PHP32|SMAPME N-acylsphingosine amidohydrolase 1 protein-coding 187.5-70 chr8 125895325 125895976 + 0.5 NA Intergenic Intergenic 55547 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 148.25-57 chr3 34556502 34556866 + 0.5 NA Intergenic Intergenic 758054 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 147.75-65 chr22 47578212 47578769 + 0.5 NA Intergenic MER4A1|LTR|ERV1 53079 NR_033377 400932 Hs.561058 NM_001001693 ENSG00000205634 LINC00898 - long intergenic non-protein coding RNA 898 ncRNA 160.75-95 chr6 140847640 140848012 + 0.5 NA Intergenic Intergenic 164012 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 195.75-10 chr10 80767450 80768187 + 0.5 NA Intergenic MIR|SINE|MIR 118021 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 189.75-28 chr15 85734090 85734578 + 0.5 NA intron (NM_007200, intron 30 of 36) HAL1M8|LINE|L1 24391 NR_120366 101929679 Hs.513112 NR_120366 LOC101929679 - uncharacterized LOC101929679 ncRNA 152.5-103 chr7 42757273 42757716 + 0.5 NA Intergenic HAL1b|LINE|L1 -51047 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 246.25-14 chr12 40569548 40570439 + 0.5 NA intron (NM_173600, intron 173 of 173) intron (NM_173600, intron 173 of 173) -122446 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 146.25-85 chr7 40726493 40726823 + 0.5 NA intron (NM_024728, intron 13 of 14) intron (NM_024728, intron 13 of 14) 253281 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 156.5-108 chr8 67315213 67315829 + 0.5 NA intron (NM_006421, intron 1 of 38) L1MDa|LINE|L1 28260 NM_006421 10565 Hs.656902 NM_006421 ENSG00000066777 ARFGEF1 ARFGEP1|BIG1|P200 ADP ribosylation factor guanine nucleotide exchange factor 1 protein-coding 200-17 chr13 107769626 107770219 + 0.5 NA intron (NM_001080396, intron 1 of 2) AluY|SINE|Alu 65536 NR_046848 100874375 Hs.653972 NR_046848 FAM155A-IT1 - FAM155A intronic transcript 1 ncRNA 158.5-41 chr2 26739379 26739733 + 0.5 NA Intergenic Intergenic -24728 NM_017877 54978 Hs.1594 NM_017877 ENSG00000213699 SLC35F6 ANT2BP|C2orf18|TANGO9 solute carrier family 35 member F6 protein-coding 164.75-39 chr2 61700125 61700593 + 0.5 NA Intergenic AluJo|SINE|Alu 153701 NM_032180 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 197.5-51 chr5 56416306 56416918 + 0.5 NA Intergenic MLT2A1|LTR|ERVL 65157 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 176.25-10 chr10 91548517 91548990 + 0.5 NA intron (NR_024467, intron 1 of 4) intron (NR_024467, intron 1 of 4) 62707 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 167.25-41 chr2 231088755 231089345 + 0.5 NA intron (NM_001191037, intron 16 of 23) Tigger1|DNA|TcMar-Tigger 32183 NM_002807 5707 Hs.3887 NM_002807 ENSG00000173692 PSMD1 P112|Rpn2|S1 proteasome 26S subunit, non-ATPase 1 protein-coding 155-13 chr11 22140055 22140485 + 0.5 NA Intergenic L2b|LINE|L2 -52815 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 153.25-37 chr14 62242699 62243186 + 0.5 NA Intergenic Intergenic -102969 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 179.5-49 chr22 19733098 19733735 + 0.5 NA Intergenic Intergenic 9873 NM_000407 2812 Hs.283743 NM_000407 ENSG00000203618 GP1BB BDPLT1|BS|CD42C|GPIBB|GPIbbeta glycoprotein Ib platelet subunit beta protein-coding 158-67 chr5 64805814 64806236 + 0.5 NA intron (NM_005869, intron 10 of 13) intron (NM_005869, intron 10 of 13) 37095 NM_005869 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 187.25-43 chr3 194696111 194696834 + 0.5 NA Intergenic Intergenic 10589 NM_153690 131583 Hs.435080 NM_153690 ENSG00000185112 FAM43A - family with sequence similarity 43 member A protein-coding 238-21 chr8 35729889 35730630 + 0.5 NA intron (NM_001322818, intron 10 of 16) intron (NM_001322818, intron 10 of 16) -19939 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 154-78 chr4 182957232 182957669 + 0.5 NA Intergenic MER4D|LTR|ERV1 -39973 NM_001921 1635 Hs.183850 NM_001921 ENSG00000129187 DCTD - dCMP deaminase protein-coding 188.75-39 chr3 23121692 23122425 + 0.5 NA Intergenic L1ME4a|LINE|L1 80520 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 169.75-52 chr4 66442272 66442744 + 0.5 NA Intergenic Intergenic 165684 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 158.75-72 chr7 11534931 11535328 + 0.5 NA intron (NM_015204, intron 6 of 26) intron (NM_015204, intron 6 of 26) 297069 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 196-8 chr10 105335305 105335885 + 0.5 NA Intergenic Intergenic 484738 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 147-81 chr4 106233298 106233717 + 0.5 NA intron (NM_001290768, intron 17 of 26) intron (NM_001290768, intron 17 of 26) -82103 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 231.5-4 chr11 91412603 91413290 + 0.5 NA Intergenic Tigger3a|DNA|TcMar-Tigger -543744 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 172-5 chr1 71977089 71977535 + 0.5 NA intron (NM_173808, intron 1 of 6) AluSx|SINE|Alu -140300 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 178-51 chr5 16203018 16203478 + 0.5 NA Intergenic Intergenic 23007 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 212-9 chr12 55280744 55281177 + 0.5 NA Intergenic Intergenic 14272 NM_001005493 283365 Hs.554555 NM_001005493 ENSG00000188324 OR6C6 - olfactory receptor family 6 subfamily C member 6 protein-coding 175-17 chr2 81738952 81739558 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -272309 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 150.25-72 chr4 152783343 152783855 + 0.5 NA intron (NM_001025595, intron 1 of 8) MIRb|SINE|MIR 3645 NM_001025595 27236 Hs.416089 NM_014447 ENSG00000164144 ARFIP1 HSU52521 ADP ribosylation factor interacting protein 1 protein-coding 174.25-12 chr10 107416013 107416490 + 0.5 NA Intergenic Intergenic -251545 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 255.75-10 chr21 23391089 23391913 + 0.5 NA Intergenic L1MD2|LINE|L1 -6666 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 164.25-81 chr7 49478180 49478669 + 0.5 NA Intergenic L1PA15|LINE|L1 -295214 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 179.5-5 chr10 23529668 23530095 + 0.5 NA Intergenic Intergenic 90612 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 161.5-35 chr15 25936418 25936957 + 0.5 NA intron (NR_040082, intron 1 of 4) intron (NR_040082, intron 1 of 4) 34327 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LINC02346 - long intergenic non-protein coding RNA 2346 ncRNA 153-49 chr20 54492089 54492490 + 0.5 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 16696 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 158-32 chr2 38014321 38014874 + 0.5 NA intron (NM_144713, intron 10 of 10) intron (NM_144713, intron 10 of 10) 21744 NR_102712 101410544 Hs.591566 NR_102712 RMDN2-AS1 - RMDN2 antisense RNA 1 ncRNA 157.75-26 chr12 86558949 86559455 + 0.5 NA intron (NM_001351285, intron 2 of 8) L1MA8|LINE|L1 185947 NR_162123 113839519 NR_162123 MIR3059 - microRNA 3059 ncRNA 154.75-34 chr18 33701871 33702442 + 0.5 NA intron (NM_030632, intron 8 of 11) L1M4b|LINE|L1 123937 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 207.75-33 chr4 75757272 75757918 + 0.5 NA intron (NM_003715, intron 4 of 23) intron (NM_003715, intron 4 of 23) 33073 NM_003715 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 148-72 chr5 19851243 19851672 + 0.5 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) 34815 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 180.75-11 chr11 35674422 35674974 + 0.5 NA intron (NM_017583, intron 1 of 4) L2c|LINE|L2 11923 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 152.25-34 chr17 59432723 59433189 + 0.5 NA intron (NR_110813, intron 2 of 2) L2c|LINE|L2 66873 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 182.75-42 chr3 35857220 35857702 + 0.5 NA Intergenic L2a|LINE|L2 112985 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 182.75-76 chr9 30518092 30518631 + 0.5 NA Intergenic L1MDb|LINE|L1 -109907 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 150.25-69 chr4 62883231 62883599 + 0.5 NA Intergenic L1PA14|LINE|L1 -721650 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 162-3 chr1 105952003 105952402 + 0.5 NA intron (NR_146609, intron 5 of 5) L1PBa|LINE|L1 76051 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 182.75-8 chr10 49503255 49503762 + 0.5 NA intron (NM_001346440, intron 6 of 20) intron (NM_001346440, intron 6 of 20) 20773 NM_170753 267004 Hs.49063 NM_170753 ENSG00000225830 PGBD3 - piggyBac transposable element derived 3 protein-coding 208.5 chr1 114723980 114724434 + 0.5 NA intron (NM_001007553, intron 15 of 19) intron (NM_001007553, intron 15 of 19) -7436 NM_002524 4893 Hs.486502 NM_002524 ENSG00000213281 NRAS ALPS4|CMNS|N-ras|NCMS|NRAS1|NS6 NRAS proto-oncogene, GTPase protein-coding 163.75-43 chr3 146295767 146296110 + 0.5 NA Intergenic L1MEf|LINE|L1 -44759 NM_001128306 57088 Hs.477869 NM_020353 ENSG00000114698 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 222 chr1 114971698 114972538 + 0.5 NA intron (NM_001282541, intron 27 of 31) L1M1|LINE|L1 -57706 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 155.75-47 chr18 68030397 68030786 + 0.5 NA Intergenic Intergenic -215769 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 231.25-33 chr6 153583139 153583810 + 0.5 NA Intergenic L2a|LINE|L2 -427022 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 164.75-57 chr3 159367590 159368221 + 0.5 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 85259 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 157.5-58 chr22 40557435 40557844 + 0.5 NA intron (NM_020831, intron 2 of 14) intron (NM_020831, intron 2 of 14) -23812 NM_001318139 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 175.5-18 chr11 133648756 133649320 + 0.5 NA Intergenic Intergenic -116537 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 172.5-17 chr12 27659106 27659570 + 0.5 NA intron (NM_003622, intron 10 of 29) intron (NM_003622, intron 10 of 29) -37109 NM_001029874 387849 Hs.269836 NM_001029874 ENSG00000174236 REP15 RAB15EP RAB15 effector protein protein-coding 191.25-66 chrX 51494488 51494953 + 0.5 NA intron (NM_018159, intron 1 of 1) intron (NM_018159, intron 1 of 1) 1872 NM_018159 55190 Hs.200016 NM_018159 ENSG00000196368 NUDT11 APS1|ASP1|DIPP3b|DIPP3beta|hDIPP3beta nudix hydrolase 11 protein-coding 145.75-36 chr17 8194804 8195309 + 0.5 NA Intergenic AluSx|SINE|Alu -4876 NM_017622 54785 Hs.129563 NM_017622 ENSG00000196544 BORCS6 C17orf59|PRO2472 BLOC-1 related complex subunit 6 protein-coding 162.25 chr1 26320770 26321217 + 0.5 NA TTS (NM_001803) TTS (NM_001803) -2728 NM_145345 91544 Hs.145061 NM_145345 ENSG00000158062 UBXN11 COA-1|PP2243|SOC|SOCI|UBXD5 UBX domain protein 11 protein-coding 212.25-7 chr10 54206641 54207234 + 0.5 NA intron (NM_001354411, intron 10 of 34) intron (NM_001354411, intron 10 of 34) -279293 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 147.25-56 chr3 35946529 35946988 + 0.5 NA Intergenic Intergenic 202282 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 179.25 chr1 45276105 45276553 + 0.5 NA Intergenic L1M4c|LINE|L1 -27581 NR_024270 400752 Hs.334348 NR_024270 ENSG00000281912 LINC01144 - long intergenic non-protein coding RNA 1144 ncRNA 211.25-44 chr8 27872892 27873539 + 0.5 NA intron (NM_173833, intron 8 of 8) HERVH-int|LTR|ERV1 12901 NR_036249 100422828 NR_036249 ENSG00000265847 MIR4287 - microRNA 4287 ncRNA 223.25-26 chr5 41579829 41580544 + 0.5 NA Intergenic MER5A|DNA|hAT-Charlie -69585 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 190-4 chr1 219439991 219440371 + 0.5 NA intron (NR_135822, intron 2 of 3) L1MC5|LINE|L1 117143 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 152-67 chr4 174486104 174486621 + 0.5 NA Intergenic AluJb|SINE|Alu 36126 NM_000860 3248 Hs.596913 NM_000860 ENSG00000164120 HPGD 15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1 15-hydroxyprostaglandin dehydrogenase protein-coding 177.5-32 chr22 34998040 34998549 + 0.5 NA promoter-TSS (NR_138042) promoter-TSS (NR_138042) -378 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 187.75-43 chr20 54284564 54285220 + 0.5 NA Intergenic L1MA4|LINE|L1 76805 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 169-65 chr7 39655343 39655935 + 0.5 NA intron (NM_005402, intron 1 of 4) intron (NM_005402, intron 1 of 4) 32067 NM_005402 5898 Hs.6906 NM_005402 ENSG00000006451 RALA RAL RAS like proto-oncogene A protein-coding 262-9 chr7 10093412 10094000 + 0.5 NA Intergenic L1MC1|LINE|L1 459436 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 158.5-11 chr11 66188375 66188969 + 0.5 NA intron (NM_018026, intron 1 of 23) intron (NM_018026, intron 1 of 23) -68622 NM_001134775 64837 Hs.280792 NM_022822 ENSG00000174996 KLC2 - kinesin light chain 2 protein-coding 222.5-12 chr11 21070415 21070973 + 0.5 NA intron (NM_201551, intron 12 of 18) intron (NM_201551, intron 12 of 18) 401108 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 153.5-13 chr10 78151274 78151784 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -97096 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 152.25-104 chrX 90063989 90064554 + 0.5 NA Intergenic Intergenic 142363 NM_138960 90316 Hs.592220 NM_138960 ENSG00000153779 TGIF2LX TGIFLX TGFB induced factor homeobox 2 like X-linked protein-coding 155.5-104 chr8 88484938 88485270 + 0.5 NA Intergenic Intergenic -157621 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 269-5 chr2 68308636 68309654 + 0.5 NA intron (NM_015463, intron 2 of 2) intron (NM_015463, intron 2 of 2) 10906 NM_015463 25927 Hs.212885 NM_015463 ENSG00000119865 CNRIP1 C2orf32|CRIP1 cannabinoid receptor interacting protein 1 protein-coding 161.75-54 chr3 177311311 177311787 + 0.5 NA intron (NR_047465, intron 1 of 1) AluSc8|SINE|Alu 17107 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 166.75-61 chr4 45651350 45651726 + 0.5 NA Intergenic Intergenic 472516 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 156.75-47 chr2 24695648 24696269 + 0.5 NA intron (NM_001362950, intron 10 of 23) intron (NM_001362950, intron 10 of 23) -97157 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 173-75 chr7 8271093 8271670 + 0.5 NA intron (NR_125740, intron 3 of 5) L1MEc|LINE|L1 -8769 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 157-97 chr8 107767512 107768000 + 0.5 NA Intergenic MIR|SINE|MIR -269838 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 174-20 chr14 70219198 70219758 + 0.5 NA intron (NR_135825, intron 2 of 3) L1MB7|LINE|L1 28323 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 181.75-43 chr3 81033602 81034212 + 0.5 NA intron (NR_132411, intron 1 of 1) intron (NR_132411, intron 1 of 1) 40039 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 216-25 chr4 33404318 33405035 + 0.5 NA Intergenic Intergenic 635217 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 234.75-3 chr1 113566786 113567496 + 0.5 NA intron (NM_001142782, intron 2 of 20) L1ME3B|LINE|L1 176626 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 242.5-11 chr15 79208280 79209186 + 0.5 NA intron (NR_038997, intron 1 of 1) MIRb|SINE|MIR -1055 NR_029705 406960 NR_029705 ENSG00000207695 MIR184 EDICT|MIRN184|miR-184 microRNA 184 ncRNA 149.25-43 chr2 12654165 12654554 + 0.5 NA Intergenic Intergenic -62513 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 157.5-74 chr5 30333340 30333848 + 0.5 NA Intergenic L1PB4|LINE|L1 453034 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 152.75-53 chr2 146142590 146143182 + 0.5 NA Intergenic Intergenic -444171 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 175.25-60 chr6 121590485 121590900 + 0.5 NA Intergenic L2|LINE|L2 155046 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 145.75-130 chr9 30638703 30639169 + 0.5 NA Intergenic L1MC3|LINE|L1 -230482 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 148.75-61 chr3 12882483 12883038 + 0.5 NA intron (NR_136189, intron 1 of 2) LTR12C|LTR|ERV1 2451 NR_136189 105376955 Hs.561179 NR_136189 ENSG00000232746 LINC02022 - long intergenic non-protein coding RNA 2022 ncRNA 149-74 chr4 67165071 67165582 + 0.5 NA Intergenic L1MC1|LINE|L1 256674 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 154.5-96 chr8 126368103 126368646 + 0.5 NA Intergenic Intergenic 42879 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 350.25-4 chr5 153588253 153589304 + 0.5 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 96606 NM_001258022 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 149.5-22 chr13 83333363 83333757 + 0.5 NA Intergenic Intergenic 548833 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 147-59 chr22 42290858 42291342 + 0.5 NA Intergenic MIRb|SINE|MIR -7173 NM_005650 6942 Hs.475018 NM_005650 ENSG00000100207 TCF20 AR1|DDVIBA|SPBP|TCF-20 transcription factor 20 protein-coding 163.75-8 chr1 246795892 246796444 + 0.5 NA Intergenic Intergenic 6551 NR_015422 149134 Hs.720494 NM_207326 LINC01341 - long intergenic non-protein coding RNA 1341 ncRNA 156.5-9 chr1 110682577 110683120 + 0.5 NA Intergenic Intergenic -7908 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 250.25-18 chr3 37544604 37545469 + 0.5 NA intron (NM_002207, intron 15 of 27) intron (NM_002207, intron 15 of 27) 92895 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 155.25-53 chr21 23189951 23190554 + 0.5 NA Intergenic L1M1|LINE|L1 110968 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 146-66 chr5 33228219 33228531 + 0.5 NA Intergenic Intergenic -1360 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 153.25-79 chr3 85380756 85381287 + 0.5 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -4689 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 177.75-12 chr12 22792245 22792812 + 0.5 NA Intergenic Intergenic 167357 NM_001039481 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 154.75-20 chr14 26334330 26334797 + 0.5 NA Intergenic Intergenic 218867 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 153.25-3 chr1 33769844 33770313 + 0.5 NA intron (NM_052896, intron 13 of 69) intron (NM_052896, intron 13 of 69) -90397 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 212-16 chr16 62891274 62891974 + 0.5 NA Intergenic L1MA6|LINE|L1 -855186 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 198.25-29 chr20 56000512 56001132 + 0.5 NA exon (NM_080617, exon 2 of 3) exon (NM_080617, exon 2 of 3) 4697 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 189-13 chr12 6519320 6519970 + 0.5 NA intron (NM_014865, intron 13 of 31) L1ME4b|LINE|L1 9423 NR_004387 692148 NR_004387 ENSG00000239002 SCARNA10 U85 small Cajal body-specific RNA 10 ncRNA 175.5-89 chr7 82346458 82347100 + 0.5 NA intron (NM_000722, intron 2 of 38) intron (NM_000722, intron 2 of 38) 96998 NM_000722 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 206.25-23 chr20 32225699 32226318 + 0.5 NA intron (NM_015352, intron 4 of 6) intron (NM_015352, intron 4 of 6) -11787 NR_031726 100302183 NR_031726 ENSG00000284125 MIR1825 MIRN1825|hsa-mir-1825 microRNA 1825 ncRNA 180.5-8 chr11 5643206 5643738 + 0.5 NA exon (NM_001003827, exon 8 of 8) exon (NM_001003827, exon 8 of 8) 11217 NM_130390 53840 Hs.729048 NM_021616 ENSG00000258659 TRIM34 IFP1|RNF21 tripartite motif containing 34 protein-coding 282.5-11 chr3 96200874 96201985 + 0.5 NA Intergenic L1PA15|LINE|L1 -158535 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 207.25-18 chr14 37206202 37206917 + 0.5 NA intron (NM_138731, intron 1 of 13) THE1B-int|LTR|ERVL-MaLR 8622 NM_138731 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 182-56 chr7 99272426 99272882 + 0.5 NA promoter-TSS (NR_002147) promoter-TSS (NR_002147) -647 NR_002147 84176 Hs.621401 NR_002147 MYH16 MHC20|MYH16P|MYH5 myosin heavy chain 16 pseudogene pseudo 205.75-10 chr1 199164314 199164862 + 0.5 NA intron (NR_147896, intron 3 of 3) intron (NR_147896, intron 3 of 3) 15990 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 156.5-103 chr7 82112990 82113603 + 0.5 NA intron (NM_000722, intron 6 of 38) intron (NM_000722, intron 6 of 38) 104119 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 163-46 chr2 117265365 117265819 + 0.5 NA Intergenic Intergenic -549099 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 190.75-21 chr13 57667551 57668123 + 0.5 NA intron (NM_001040429, intron 3 of 3) (AT)n|Simple_repeat|Simple_repeat 36093 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 167.25-44 chr21 32088190 32088816 + 0.5 NA Intergenic MIRb|SINE|MIR -2208 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 214.75-42 chr5 118456339 118456873 + 0.5 NA intron (NR_104610, intron 9 of 9) intron (NR_104610, intron 9 of 9) 105511 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 214.25-5 chr11 19689030 19689774 + 0.5 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -23435 NM_145117 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 188.5-76 chr9 116508537 116509288 + 0.5 NA intron (NR_033973, intron 1 of 11) intron (NR_033973, intron 1 of 11) 4629 NR_033973 100128505 Hs.675821 NR_033973 ENSG00000229105 ASTN2-AS1 - ASTN2 antisense RNA 1 ncRNA 172.25-37 chr20 4078436 4078935 + 0.5 NA Intergenic L1MB5|LINE|L1 -63127 NM_001134337 11237 Hs.547576 NM_007219 ENSG00000101236 RNF24 G1L ring finger protein 24 protein-coding 202.5-64 chr8 121956618 121957199 + 0.5 NA Intergenic Intergenic -315468 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 157.5-4 chr1 101206591 101207066 + 0.5 NA Intergenic Intergenic 29700 NR_104626 101928370 Hs.534209 NR_104626 LOC101928370 - uncharacterized LOC101928370 ncRNA 207-48 chr7 116851399 116851897 + 0.5 NA Intergenic Intergenic -10939 NM_006136 830 Hs.446123 NM_006136 ENSG00000198898 CAPZA2 CAPPA2|CAPZ capping actin protein of muscle Z-line subunit alpha 2 protein-coding 165.75-9 chr1 155397773 155398371 + 0.5 NA intron (NM_018489, intron 6 of 27) intron (NM_018489, intron 6 of 27) -35108 NR_034180 645682 Hs.632482 NR_034180 ENSG00000237872 POU5F1P4 OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1 POU class 5 homeobox 1 pseudogene 4 pseudo 176-15 chr14 60797561 60798222 + 0.5 NA intron (NM_001177963, intron 2 of 6) AluSz|SINE|Alu 63130 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 185.5-25 chr14 46602647 46603134 + 0.5 NA Intergenic Intergenic 48891 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 156.75-67 chr3 112991442 112992004 + 0.5 NA intron (NM_138485, intron 1 of 4) intron (NM_138485, intron 1 of 4) 739 NM_014170 29083 Hs.127496 NM_014170 ENSG00000163607 GTPBP8 HSPC135 GTP binding protein 8 (putative) protein-coding 169.5-94 chr8 85618097 85618588 + 0.5 NA Intergenic Intergenic 37334 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 162.25-25 chr17 60737051 60737659 + 0.5 NA intron (NM_001330413, intron 5 of 25) L1MCa|LINE|L1 59504 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 171.25-52 chr6 116203021 116203596 + 0.5 NA intron (NM_152729, intron 6 of 11) intron (NM_152729, intron 6 of 11) 50767 NM_021648 23270 Hs.284141 NM_021648 ENSG00000187189 TSPYL4 dJ486I3.2 TSPY like 4 protein-coding 236.25-10 chr11 108497488 108498004 + 0.5 NA intron (NM_001363502, intron 1 of 5) intron (NM_001363502, intron 1 of 5) 638 NM_153705 143888 Hs.83286 NM_153705 ENSG00000178202 POGLUT3 KDELC2 protein O-glucosyltransferase 3 protein-coding 258.75-12 chr2 51724842 51725827 + 0.5 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) -645314 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 203-28 chr3 167086272 167086712 + 0.5 NA Intergenic L2c|LINE|L2 187809 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 148.25-70 chr5 52561408 52561925 + 0.5 NA Intergenic Intergenic -226250 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 177.75-14 chr12 125725455 125726034 + 0.5 NA Intergenic LTR14B|LTR|ERVK 103292 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 187.75-10 chr10 102984788 102985304 + 0.5 NA intron (NM_199076, intron 1 of 6) U2|snRNA|snRNA -66711 NR_160733 107984265 NR_160733 LOC107984265 - uncharacterized LOC107984265 ncRNA 166.5-55 chr4 15640799 15641258 + 0.5 NA intron (NM_001193534, intron 2 of 10) intron (NM_001193534, intron 2 of 10) 14329 NM_012161 26234 Hs.643433 NM_012161 ENSG00000118564 FBXL5 FBL4|FBL5|FLR1 F-box and leucine rich repeat protein 5 protein-coding 152.5-112 chr8 113462272 113462741 + 0.5 NA Intergenic Intergenic -25567 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 155.5-86 chr6 37413846 37414247 + 0.5 NA Intergenic L1ME1|LINE|L1 -19175 NM_015050 23070 Hs.520102 NM_015050 ENSG00000137200 CMTR1 FTSJD2|KIAA0082|MTr1|hMTr1 cap methyltransferase 1 protein-coding 160.5-86 chr5 33602191 33602668 + 0.5 NA intron (NM_001324512, intron 14 of 21) intron (NM_001324512, intron 14 of 21) 161653 NM_001258438 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 239-8 chr15 59220347 59221032 + 0.5 NA intron (NM_004998, intron 9 of 27) L1ME4b|LINE|L1 13846 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 165.75-68 chr3 169125582 169125998 + 0.5 NA intron (NM_001163999, intron 4 of 14) intron (NM_001163999, intron 4 of 14) 19733 NM_001366472 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 152-96 chr8 121188878 121189471 + 0.5 NA Intergenic Intergenic -377128 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 147-75 chr4 43143166 43143635 + 0.5 NA Intergenic Intergenic 250134 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 154.5-78 chr5 67257738 67258188 + 0.5 NA Intergenic MIR|SINE|MIR -61164 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 232.5-11 chr13 89006137 89006696 + 0.5 NA Intergenic Intergenic -228875 NR_047025 100874172 Hs.569291 NR_047025 LINC00440 - long intergenic non-protein coding RNA 440 ncRNA 159.25-15 chr13 62813397 62813899 + 0.5 NA Intergenic Intergenic -6289 NR_120403 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 161.25-25 chr14 83994694 83995293 + 0.5 NA Intergenic AluSz|SINE|Alu -1276939 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 163.5-50 chr18 2630646 2631209 + 0.5 NA Intergenic AluSc|SINE|Alu 24468 NR_033754 645158 Hs.712861 NR_033754 ENSG00000266405 CBX3P2 - chromobox 3 pseudogene 2 pseudo 304.5-11 chr8 112792522 112793319 + 0.5 NA intron (NM_001363185, intron 11 of 66) intron (NM_001363185, intron 11 of 66) 149427 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 247.5-31 chr7 14937619 14938245 + 0.5 NA intron (NM_001350717, intron 1 of 24) Tigger2a|DNA|TcMar-Tigger -34276 NM_001350715 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 190.5-59 chr7 119004123 119004731 + 0.5 NA Intergenic Intergenic 779723 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 190.5-31 chr20 21935741 21936418 + 0.5 NA Intergenic Intergenic -118011 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 182.5-75 chr7 94241694 94242331 + 0.5 NA Intergenic Intergenic 150180 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 200.25-25 chr17 50538904 50539373 + 0.5 NA promoter-TSS (NR_135675) promoter-TSS (NR_135675) -384 NR_135675 105371824 Hs.683630 NR_135675 ENSG00000250286 LOC105371824 - uncharacterized LOC105371824 ncRNA 183.5-10 chr12 19781268 19781871 + 0.5 NA Intergenic L1PREC2|LINE|L1 -233116 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 161.5-73 chr4 157423301 157423937 + 0.5 NA Intergenic Intergenic -148871 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 167.25-30 chr18 6014244 6014860 + 0.5 NA intron (NR_158609, intron 15 of 17) L2b|LINE|L2 -118598 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 234.5-4 chr13 84135706 84136260 + 0.5 NA Intergenic Intergenic -4619 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 163.25-70 chr7 49366461 49366927 + 0.5 NA Intergenic MLT1C-int|LTR|ERVL-MaLR -406944 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 255.75-7 chr14 45945045 45945563 + 0.5 NA Intergenic Intergenic -118855 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 171.25-8 chr10 54378288 54378778 + 0.5 NA intron (NM_001354411, intron 4 of 34) intron (NM_001354411, intron 4 of 34) -107697 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 152-56 chr3 173859245 173859593 + 0.5 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) 61377 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 258-2 chr1 116779021 116779902 + 0.5 NA Intergenic L1MD2|LINE|L1 25031 NM_001767 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 151.75 chr1 8838093 8838428 + 0.5 NA Intergenic Intergenic -20620 NM_012102 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 159-82 chr7 69993567 69994025 + 0.5 NA intron (NM_015570, intron 2 of 18) intron (NM_015570, intron 2 of 18) 395321 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 167.25-15 chr11 110106599 110107028 + 0.5 NA intron (NM_033390, intron 1 of 5) intron (NM_033390, intron 1 of 5) 13421 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 188.5-49 chr4 62956004 62956587 + 0.5 NA Intergenic L1PA10|LINE|L1 -794530 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 197-46 chr8 126190634 126191204 + 0.5 NA Intergenic L1ME3D|LINE|L1 -134576 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 156-50 chr3 19267540 19267957 + 0.5 NA intron (NM_144633, intron 2 of 15) intron (NM_144633, intron 2 of 15) 47183 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 185.75-81 chr8 19346265 19346690 + 0.5 NA intron (NM_001363110, intron 4 of 8) MER1A|DNA|hAT-Charlie 32501 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 152-15 chr11 56022930 56023427 + 0.5 NA Intergenic Intergenic -7241 NM_001001921 219447 Hs.553625 NM_001001921 ENSG00000181785 OR5AS1 OR11-168 olfactory receptor family 5 subfamily AS member 1 protein-coding 165-96 chrX 133765157 133765657 + 0.5 NA intron (NM_001164619, intron 1 of 6) intron (NM_001164619, intron 1 of 6) -132036 NR_148713 110806308 Hs.658628 NR_148713 ENSG00000286096 GPC3-AS1 - GPC3 antisense RNA 1 ncRNA 153.75-4 chr10 12613144 12613546 + 0.5 NA intron (NM_001351032, intron 4 of 11) intron (NM_001351032, intron 4 of 11) 34592 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 152.25-36 chr18 59566043 59566628 + 0.5 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 131088 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 167.25-16 chr12 41647718 41648126 + 0.5 NA Intergenic AluSc|SINE|Alu -116267 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 180-40 chr22 28283448 28283857 + 0.5 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -176217 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 171.5-10 chr1 189370553 189371223 + 0.5 NA Intergenic Intergenic 1105122 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 263.25-25 chr6 66790290 66791061 + 0.5 NA Intergenic L1MA4|LINE|L1 1002796 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 280.25-10 chr6 55597306 55598289 + 0.5 NA Intergenic L3|LINE|CR1 -18583 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 157-99 chr8 117240533 117240953 + 0.5 NA Intergenic Intergenic 105748 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 185.5-6 chr1 77552595 77553309 + 0.5 NA intron (NM_012093, intron 13 of 13) AluJr4|SINE|Alu 129706 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 160.25-5 chr1 197966604 197967055 + 0.5 NA Intergenic Intergenic 49457 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 167-44 chr2 78140166 78140700 + 0.5 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) 51703 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 188.5-39 chr3 101082737 101083373 + 0.5 NA Intergenic Tigger13a|DNA|TcMar-Tigger -89565 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 233.75-2 chr10 98707012 98707932 + 0.5 NA intron (NM_021828, intron 5 of 11) intron (NM_021828, intron 5 of 11) 217096 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 146.25-52 chr21 30846339 30846765 + 0.5 NA Intergenic Intergenic -16793 NM_181606 337878 Hs.407656 NM_181606 ENSG00000274749 KRTAP7-1 KAP7.1 keratin associated protein 7-1 (gene/pseudogene) protein-coding 198.5-16 chr12 84999889 85000518 + 0.5 NA Intergenic Intergenic 36074 NM_001100917 144448 Hs.156962 NM_001100917 ENSG00000231738 TSPAN19 - tetraspanin 19 protein-coding 207-6 chr10 114994615 114995411 + 0.5 NA intron (NR_120677, intron 1 of 2) intron (NR_120677, intron 1 of 2) 356 NR_120677 102724589 NR_120677 ENSG00000236799 LINC02626 - long intergenic non-protein coding RNA 2626 ncRNA 182.25-58 chr8 19950920 19951476 + 0.5 NA intron (NM_000237, intron 2 of 9) intron (NM_000237, intron 2 of 9) 11945 NM_000237 4023 Hs.180878 NM_000237 ENSG00000175445 LPL HDLCQ11|LIPD lipoprotein lipase protein-coding 165-38 chr2 8275864 8276408 + 0.5 NA intron (NR_152741, intron 8 of 9) THE1B|LTR|ERVL-MaLR 52283 NR_034135 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 184.5-68 chr7 145196341 145196969 + 0.5 NA Intergenic L1ME1|LINE|L1 -360602 NM_022445 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 228.5-34 chr22 48389821 48390329 + 0.5 NA Intergenic Intergenic -99478 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 159-59 chr3 176155184 176155758 + 0.5 NA Intergenic AluY|SINE|Alu -89080 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 162.5-27 chr14 44944891 44945324 + 0.5 NA exon (NM_001308112, exon 2 of 5) exon (NM_001308112, exon 2 of 5) 16378 NM_001308112 54813 Hs.550906 NM_017658 ENSG00000179454 KLHL28 BTBD5 kelch like family member 28 protein-coding 189-62 chr8 123249011 123249690 + 0.5 NA non-coding (NR_037874, exon 3 of 3) non-coding (NR_037874, exon 3 of 3) -7973 NM_032847 84933 Hs.707401 NM_032847 ENSG00000189376 C8orf76 - chromosome 8 open reading frame 76 protein-coding 201-12 chr14 22294142 22294662 + 0.5 NA Intergenic Intergenic 138351 NR_148362 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 193.75-26 chr16 34572746 34573327 + 0.5 NA Intergenic (GAATG)n|Satellite|Satellite -191556 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 185.75-83 chr8 32343375 32343782 + 0.5 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -97168 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 151.75-47 chr2 118736779 118737307 + 0.5 NA Intergenic Intergenic 111140 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 186.5-21 chr15 56320032 56320632 + 0.5 NA Intergenic MLT1A|LTR|ERVL-MaLR -45092 NM_001286449 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 155.75-21 chr11 90921321 90921829 + 0.5 NA Intergenic Intergenic -52373 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 172-24 chr14 65367338 65367746 + 0.5 NA Intergenic Intergenic -32359 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 170-14 chr11 111270185 111270594 + 0.5 NA intron (NM_198498, intron 2 of 4) intron (NM_198498, intron 2 of 4) 24664 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 161.25-40 chr2 154223318 154223771 + 0.5 NA intron (NM_052917, intron 4 of 12) AluSp|SINE|Alu 233894 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 197.25-43 chr5 159382089 159382668 + 0.5 NA Intergenic L1PB2|LINE|L1 50860 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 188.5-6 chr10 63550768 63551326 + 0.5 NA intron (NM_001001330, intron 1 of 7) L1MC3|LINE|L1 -29157 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 159.25-41 chr2 225409933 225410338 + 0.5 NA intron (NM_001371273, intron 3 of 7) intron (NM_001371273, intron 3 of 7) 9249 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 202.75-22 chr18 60614088 60614573 + 0.5 NA Intergenic AluJb|SINE|Alu -241555 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 174.25-21 chr15 58003414 58003950 + 0.5 NA intron (NM_170696, intron 4 of 11) intron (NM_170696, intron 4 of 11) 10341 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 177.25-11 chr11 77703635 77704095 + 0.5 NA intron (NM_016578, intron 5 of 15) intron (NM_016578, intron 5 of 15) -66059 NM_001311199 1207 Hs.430733 NM_001293 ENSG00000074201 CLNS1A CLCI|CLNS1B|ICln chloride nucleotide-sensitive channel 1A protein-coding 207.25-46 chr5 60903392 60904184 + 0.5 NA intron (NM_001290285, intron 4 of 10) intron (NM_001290285, intron 4 of 10) 41282 NM_001007234 1161 Hs.435237 NM_000082 ENSG00000049167 ERCC8 CKN1|CSA|UVSS2 ERCC excision repair 8, CSA ubiquitin ligase complex subunit protein-coding 158.25-12 chr10 57101741 57102293 + 0.5 NA Intergenic Intergenic 202542 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 167.75-93 chr8 99894587 99894964 + 0.5 NA Intergenic Intergenic -1068 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 188.5-61 chr6 124537060 124537541 + 0.5 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 254295 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 224.5-15 chr18 1949209 1949759 + 0.5 NA Intergenic AluJo|SINE|Alu -589855 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 199.75-24 chr19 28227538 28228106 + 0.5 NA Intergenic Intergenic -378866 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 194-45 chr6 5871448 5872213 + 0.5 NA Intergenic L3|LINE|CR1 132214 NM_001278711 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 151.75-108 chr8 108628853 108629200 + 0.5 NA intron (NR_136411, intron 2 of 3) L1PA8|LINE|L1 158568 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 161.75-33 chr2 151767382 151767916 + 0.5 NA Intergenic Intergenic -33162 NM_001164508 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 187.5-61 chr6 74504787 74505365 + 0.5 NA intron (NR_110856, intron 2 of 3) L1M1|LINE|L1 435625 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 187.25-12 chr11 55975826 55976408 + 0.5 NA Intergenic Intergenic -7654 NM_001005491 282770 Hs.554525 NM_001005491 ENSG00000174970 OR10AG1 OR11-160 olfactory receptor family 10 subfamily AG member 1 protein-coding 167.75-68 chr4 176200904 176201487 + 0.5 NA Intergenic Intergenic -5610 NM_144644 132851 Hs.481235 NM_144644 ENSG00000150628 SPATA4 SPEF1B|TSARG2 spermatogenesis associated 4 protein-coding 219.5-17 chr2 103506287 103506865 + 0.5 NA Intergenic Intergenic -522147 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 198.75-20 chr14 47274749 47275297 + 0.5 NA intron (NM_001113498, intron 2 of 16) L1MB8|LINE|L1 68223 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 150-59 chr3 69284985 69285515 + 0.5 NA intron (NM_015123, intron 5 of 22) L1MEc|LINE|L1 100838 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 214.5-20 chr2 32606216 32606859 + 0.5 NA intron (NM_016252, intron 71 of 73) AluSx|SINE|Alu -21513 NM_017735 55622 Hs.468125 NM_017735 ENSG00000018699 TTC27 - tetratricopeptide repeat domain 27 protein-coding 149.25-87 chr5 169359731 169360137 + 0.5 NA Intergenic L1PB4|LINE|L1 -58795 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 154.5-30 chr14 80838411 80838935 + 0.5 NA intron (NM_152446, intron 10 of 24) intron (NM_152446, intron 10 of 24) 103065 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 159.25-62 chr5 25209112 25209694 + 0.5 NA intron (NR_136209, intron 1 of 3) intron (NR_136209, intron 1 of 3) 18450 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 169.25-31 chr2 221252257 221252708 + 0.5 NA Intergenic Intergenic 319822 NM_004438 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 160-53 chr3 146550789 146551368 + 0.5 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -6471 NM_021105 5359 Hs.130759 NM_021105 ENSG00000188313 PLSCR1 MMTRA1B phospholipid scramblase 1 protein-coding 154.5-24 chr12 128986403 128986926 + 0.5 NA Intergenic AluSz6|SINE|Alu -123026 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 173.5-78 chr7 12186485 12186930 + 0.5 NA Intergenic A-rich|Low_complexity|Low_complexity -24587 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 253-2 chr14 45103595 45104278 + 0.5 NA intron (NM_017922, intron 5 of 13) MIR|SINE|MIR -6939 NR_003691 100113389 Hs.712501 NR_003691 ENSG00000239043 SNORD127 - small nucleolar RNA, C/D box 127 snoRNA 162.25-66 chr4 162487042 162487402 + 0.5 NA Intergenic Intergenic -323188 NM_001128427 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 193.75-47 chr4 92074423 92075180 + 0.5 NA Intergenic Intergenic 202501 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 179.25-53 chr4 100236491 100237050 + 0.5 NA Intergenic MER4A1|LTR|ERV1 -46302 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 202.25-36 chr2 201904398 201904849 + 0.5 NA Intergenic Intergenic 98044 NM_001261436 65061 Hs.348711 NM_139158 ENSG00000138395 CDK15 ALS2CR7|PFTAIRE2|PFTK2 cyclin dependent kinase 15 protein-coding 161.25-54 chr5 12900559 12901194 + 0.5 NA intron (NR_147005, intron 4 of 4) intron (NR_147005, intron 4 of 4) 132010 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 179.25-22 chr12 28171780 28172369 + 0.5 NA Intergenic Intergenic -18382 NM_001352084 55297 Hs.653125 NM_018318 ENSG00000123106 CCDC91 HSD8|p56 coiled-coil domain containing 91 protein-coding 158.75-3 chr10 13133669 13134156 + 0.5 NA intron (NM_001008213, intron 15 of 15) AluSz|SINE|Alu -27646 NM_018518 55388 Hs.198363 NM_018518 ENSG00000065328 MCM10 CNA43|DNA43|PRO2249 minichromosome maintenance 10 replication initiation factor protein-coding 160.5-16 chr10 34880102 34880694 + 0.5 NA Intergenic AluJo|SINE|Alu 64630 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 167-84 chr8 37047532 37048198 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 263491 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 150-39 chr2 82000714 82001151 + 0.5 NA Intergenic Intergenic -533986 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 212-35 chr6 124803927 124804737 + 0.5 NA intron (NM_001040214, intron 5 of 6) intron (NM_001040214, intron 5 of 6) -158213 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 162.5-64 chr4 123440960 123441573 + 0.5 NA Intergenic Intergenic 41726 NM_005841 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 176.75-77 chr6 100036312 100036969 + 0.5 NA intron (NR_038384, intron 2 of 2) MIRb|SINE|MIR -42402 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 187.5-9 chr11 20236853 20237446 + 0.5 NA Intergenic L1M1|LINE|L1 -76674 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 172.75-64 chr7 97463922 97464413 + 0.5 NA Intergenic AluSx1|SINE|Alu -267919 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 157.5-14 chr11 48196710 48197067 + 0.5 NA Intergenic L1M3de|LINE|L1 -19922 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 183.75-70 chr5 91808277 91808853 + 0.5 NA Intergenic L1MEc|LINE|L1 -425248 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 198-47 chr9 8792414 8792971 + 0.5 NA intron (NM_002839, intron 11 of 45) intron (NM_002839, intron 11 of 45) -58746 NM_001040712 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 158.75-63 chr5 60397748 60398153 + 0.5 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) -25287 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 217.5-22 chr2 39617587 39618274 + 0.5 NA Intergenic L1M6|LINE|L1 -47568 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 242.5-28 chr4 74939987 74940559 + 0.5 NA intron (NM_015393, intron 1 of 3) intron (NM_015393, intron 1 of 3) 7157 NM_015393 25849 Hs.105460 NM_015393 ENSG00000169116 PARM1 Cipar1|DKFZP564O0823|PARM-1|WSC4 prostate androgen-regulated mucin-like protein 1 protein-coding 164-87 chr9 87147670 87148155 + 0.5 NA promoter-TSS (NR_161226) promoter-TSS (NR_161226) -732 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 185.25-19 chr13 104056976 104057495 + 0.5 NA Intergenic L1M4|LINE|L1 632035 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 147.75-7 chr1 165542349 165542785 + 0.5 NA intron (NR_026744, intron 3 of 6) intron (NR_026744, intron 3 of 6) -1674 NM_001005214 440699 Hs.664975 NM_001005214 ENSG00000162763 LRRC52 - leucine rich repeat containing 52 protein-coding 198.5-35 chr22 40878331 40878791 + 0.5 NA intron (NM_022098, intron 2 of 9) intron (NM_022098, intron 2 of 9) -16448 NM_145174 150353 Hs.585042 NM_145174 ENSG00000172404 DNAJB7 DJ5|HSC3 DnaJ heat shock protein family (Hsp40) member B7 protein-coding 206.5-39 chr5 147886234 147887043 + 0.5 NA Intergenic Intergenic 7927 NM_054023 117156 Hs.483765 NM_054023 ENSG00000164265 SCGB3A2 LU103|PNSP1|UGRP1|pnSP-1 secretoglobin family 3A member 2 protein-coding 213-32 chr7 79307011 79307735 + 0.5 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -145584 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 196.75 chr1 73515524 73516036 + 0.5 NA Intergenic Intergenic -158899 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 202.25-57 chr8 112922060 112922640 + 0.5 NA intron (NM_001363185, intron 7 of 66) L1MA1|LINE|L1 278857 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 208.75-16 chr2 43005526 43006078 + 0.5 NA Intergenic Intergenic 33741 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 207.25-8 chr10 62531627 62532379 + 0.5 NA intron (NM_199452, intron 1 of 6) L1ME1|LINE|L1 11555 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 195.25-53 chr8 26893431 26893918 + 0.5 NA Intergenic L1MA5A|LINE|L1 -26396 NM_000680 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 327-2 chr16 76818533 76819532 + 0.5 NA Intergenic Intergenic -49904 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 154-53 chr2 60014362 60014773 + 0.5 NA Intergenic L1MB2|LINE|L1 368469 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 165.5-26 chr12 60877140 60877779 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 1188089 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 166.5-16 chr13 69572271 69572875 + 0.5 NA Intergenic Intergenic 350227 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 148.25-32 chr15 68122453 68122924 + 0.5 NA intron (NM_016166, intron 2 of 13) intron (NM_016166, intron 2 of 13) 68112 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 195-49 chr8 135582690 135583246 + 0.5 NA intron (NM_006558, intron 6 of 8) L2c|LINE|L2 125512 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 183.5-77 chr8 137554050 137554640 + 0.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -140757 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 158.25-105 chr7 93352544 93353060 + 0.5 NA intron (NM_001257998, intron 26 of 28) intron (NM_001257998, intron 26 of 28) 120436 NM_017667 55610 Hs.202424 NM_017667 ENSG00000004766 VPS50 CCDC132|VPS54L VPS50 subunit of EARP/GARPII complex protein-coding 183.25-32 chr17 60724710 60725196 + 0.5 NA intron (NM_001330413, intron 5 of 25) AluJr4|SINE|Alu 47102 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 219.75-27 chr22 39803165 39803911 + 0.5 NA intron (NM_152512, intron 5 of 6) L2a|LINE|L2 90222 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 149.25-25 chr13 66436792 66437292 + 0.5 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) 218792 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 151.25-32 chr17 57984940 57985534 + 0.5 NA intron (NM_007146, intron 1 of 5) intron (NM_007146, intron 1 of 5) 3017 NM_001330393 7716 Hs.463569 NM_007146 ENSG00000136451 VEZF1 DB1|ZNF161 vascular endothelial zinc finger 1 protein-coding 196.5-39 chr5 11400555 11401179 + 0.5 NA intron (NM_001288715, intron 4 of 20) MIRc|SINE|MIR 188050 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 176.75-54 chr3 69019720 69020290 + 0.5 NA 3' UTR (NM_001363879, exon 17 of 17) 3' UTR (NM_001363879, exon 17 of 17) -6321 NR_103826 285203 Hs.518059 NM_173654 ENSG00000163378 EOGT AER61|AOS4|C3orf64|EOGT1 EGF domain specific O-linked N-acetylglucosamine transferase protein-coding 158-49 chr3 70548533 70549009 + 0.5 NA Intergenic Intergenic -236133 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 187.5-71 chr8 127460133 127460605 + 0.5 NA intron (NR_024393, intron 4 of 4) L1PA16|LINE|L1 21770 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 164-34 chr2 60319646 60320218 + 0.5 NA Intergenic Intergenic 63104 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 151.75-117 chr9 22675153 22675743 + 0.5 NA intron (NR_038977, intron 2 of 5) intron (NR_038977, intron 2 of 5) 29248 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 182.25-63 chr8 82295328 82295800 + 0.5 NA Intergenic Intergenic -453278 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 188-6 chr1 90429681 90430313 + 0.5 NA Intergenic L1ME1|LINE|L1 -227753 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 231.5-3 chr1 231247889 231248541 + 0.5 NA intron (NM_001316350, intron 1 of 14) Tigger2|DNA|TcMar-Tigger 7003 NM_014236 8443 Hs.498028 NM_014236 ENSG00000116906 GNPAT DAP-AT|DAPAT|DHAPAT|RCDP2 glyceronephosphate O-acyltransferase protein-coding 265.25-2 chr1 109327902 109328817 + 0.5 NA intron (NM_001205228, intron 11 of 19) L1MB2|LINE|L1 -21348 NM_001265613 343263 Hs.443402 NM_001010985 ENSG00000221986 MYBPHL - myosin binding protein H like protein-coding 145.75-13 chr10 81150116 81150413 + 0.5 NA Intergenic L1ME3B|LINE|L1 500467 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 154-107 chr8 124914017 124914526 + 0.5 NA Intergenic L2c|LINE|L2 -27737 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 198-36 chr5 125030220 125030995 + 0.5 NA Intergenic Intergenic -6224 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 212.5-32 chr3 82811571 82812111 + 0.5 NA Intergenic L1M4c|LINE|L1 825699 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 164.5-77 chr6 41811881 41812359 + 0.5 NA intron (NM_001286554, intron 1 of 5) AluSp|SINE|Alu 24677 NM_001134493 100188893 Hs.731633 NM_001134493 ENSG00000214736 TOMM6 OBTP|TOM6 translocase of outer mitochondrial membrane 6 protein-coding 157.75-12 chr10 21261138 21261675 + 0.5 NA Intergenic AluJb|SINE|Alu 87104 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 232.5-10 chr13 65265714 65266597 + 0.5 NA Intergenic (AAAT)n|Simple_repeat|Simple_repeat -599892 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 161-59 chr4 23227424 23227951 + 0.5 NA Intergenic Intergenic 513598 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 199-31 chr5 144882554 144883190 + 0.5 NA Intergenic MIR|SINE|MIR 677481 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 158-28 chr17 12909666 12910154 + 0.5 NA intron (NM_001321164, intron 4 of 20) L1MEd|LINE|L1 7432 NR_039747 100616494 NR_039747 ENSG00000265503 MIR1269B - microRNA 1269b ncRNA 172.75-30 chr16 85353314 85353763 + 0.5 NA Intergenic MER102a|DNA|hAT-Charlie -47213 NR_049816 100847022 NR_049816 ENSG00000266307 MIR5093 - microRNA 5093 ncRNA 150.5-49 chr18 60221223 60221716 + 0.5 NA Intergenic L1MA4A|LINE|L1 151306 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 179-41 chr3 74799923 74800378 + 0.5 NA Intergenic L1PA6|LINE|L1 -279010 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 170.5-9 chr11 103672100 103672738 + 0.5 NA Intergenic MIRb|SINE|MIR -177487 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 258.25-18 chr5 30866381 30867047 + 0.5 NA Intergenic L1ME2|LINE|L1 -326972 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 238-10 chr15 51306246 51306958 + 0.5 NA intron (NM_000103, intron 1 of 9) intron (NM_000103, intron 1 of 9) -7432 NR_107012 102466250 NR_107012 ENSG00000278098 MIR7973-1 hsa-mir-7973-1 microRNA 7973-1 ncRNA 149.5-77 chr5 163441480 163441824 + 0.5 NA intron (NM_001364018, intron 3 of 6) intron (NM_001364018, intron 3 of 6) 4057 NM_004060 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 199.5-22 chr2 44875333 44876098 + 0.5 NA Intergenic Intergenic 63173 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 163.25-69 chr7 48713975 48714380 + 0.5 NA Intergenic L1ME3|LINE|L1 -210370 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 195-39 chr5 85567666 85568120 + 0.5 NA Intergenic Intergenic -714551 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 148-22 chr11 108663265 108663818 + 0.5 NA Intergenic L1MB3|LINE|L1 -1528 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 183.75-8 chr1 186792090 186792558 + 0.5 NA Intergenic L1ME2|LINE|L1 -36576 NM_024420 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 288.25-9 chr4 35574898 35575867 + 0.5 NA Intergenic Intergenic 668557 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 162-2 chr1 74235462 74235929 + 0.5 NA intron (NM_015978, intron 1 of 24) intron (NM_015978, intron 1 of 24) 308 NM_015978 51086 Hs.480085 NM_015978 ENSG00000116783 TNNI3K CARK|CCDD TNNI3 interacting kinase protein-coding 167.5-76 chr5 85707191 85707826 + 0.5 NA Intergenic L1MC4|LINE|L1 -574936 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 195.75-39 chr2 187449406 187450008 + 0.5 NA Intergenic Intergenic -1455 NM_001369435 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 228-5 chr10 55238051 55238771 + 0.5 NA intron (NM_001354404, intron 2 of 34) AluY|SINE|Alu -360631 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 146.75-111 chr7 95659253 95659570 + 0.5 NA Intergenic Intergenic -62895 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 150-8 chr1 244363035 244363504 + 0.5 NA intron (NM_001276349, intron 1 of 3) AluSx1|SINE|Alu 10634 NM_001012970 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 161.5-19 chr11 9117090 9117627 + 0.5 NA Intergenic L1ME3A|LINE|L1 22995 NR_027713 283102 Hs.689472 NR_027713 ENSG00000213538 KRT8P41 - keratin 8 pseudogene 41 pseudo 145.75-105 chr6 127034773 127035340 + 0.5 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -83615 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 161.75-87 chr8 68328821 68329284 + 0.5 NA intron (NR_038877, intron 1 of 2) AluJr|SINE|Alu -1321 NM_001195639 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 172.75-44 chr3 84436964 84437487 + 0.5 NA Intergenic Intergenic 432350 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 156.5-19 chr10 27596849 27597406 + 0.5 NA Intergenic L1ME1|LINE|L1 92823 NM_001256411 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 167.25-55 chr4 96761667 96762145 + 0.5 NA intron (NR_147149, intron 3 of 3) L1MA4A|LINE|L1 451203 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 234.75-19 chr4 112472597 112473167 + 0.5 NA Intergenic L1MEc|LINE|L1 -42497 NR_161159 105377372 NR_161159 LOC105377372 - uncharacterized LOC105377372 ncRNA 145.75-79 chr3 107895832 107896289 + 0.5 NA intron (NR_015394, intron 1 of 2) intron (NR_015394, intron 1 of 2) 12855 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 158.25-76 chr4 59734710 59735137 + 0.5 NA Intergenic (ATTTA)n|Simple_repeat|Simple_repeat 721350 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 170-11 chr11 6281148 6281758 + 0.5 NA Intergenic L2a|LINE|L2 21615 NM_176875 887 Hs.203 NM_176875 ENSG00000110148 CCKBR CCK-B|CCK2R|GASR cholecystokinin B receptor protein-coding 158.75-19 chr13 20662292 20662876 + 0.5 NA intron (NM_175605, intron 24 of 27) intron (NM_175605, intron 24 of 27) -40759 NM_138284 53342 Hs.655142 NM_138284 ENSG00000172458 IL17D IL-17D interleukin 17D protein-coding 269-8 chr3 41366794 41367667 + 0.5 NA intron (NM_001322500, intron 35 of 35) HAL1ME|LINE|L1 167725 NM_001098209 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 154.25-90 chr8 128326661 128327147 + 0.5 NA Intergenic Intergenic 176788 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 184.75-12 chr11 8609097 8609712 + 0.5 NA Intergenic ORSL-2b|DNA|hAT-Tip100 -15176 NM_001352393 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 151.5-63 chr3 24508494 24508954 + 0.5 NA Intergenic Intergenic -13016 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 153.75-54 chr4 43926185 43926631 + 0.5 NA Intergenic Intergenic -90453 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 163-41 chr18 65854271 65854818 + 0.5 NA intron (NM_001362438, intron 7 of 11) intron (NM_001362438, intron 7 of 11) 103532 NM_004361 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 166.25-70 chr8 126301678 126302214 + 0.5 NA Intergenic AluSz6|SINE|Alu -23549 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 212-39 chr7 86487557 86488331 + 0.5 NA Intergenic Intergenic -155965 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 165-61 chr3 161803558 161803994 + 0.5 NA Intergenic Intergenic 306968 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 146-94 chr8 89063730 89064094 + 0.5 NA Intergenic L1MA2|LINE|L1 693799 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 171.25-25 chr17 26704674 26705266 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 384271 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 191-6 chr1 233931426 233931825 + 0.5 NA intron (NM_173508, intron 2 of 7) L1PA7|LINE|L1 26949 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 156-10 chr10 16649815 16650412 + 0.5 NA intron (NM_152724, intron 7 of 7) intron (NM_152724, intron 7 of 7) -128234 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 157.25-86 chr6 146762075 146762584 + 0.5 NA intron (NM_024694, intron 27 of 35) L1MEb|LINE|L1 41495 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 167-31 chr17 69173130 69173686 + 0.5 NA intron (NM_080282, intron 26 of 39) intron (NM_080282, intron 26 of 39) -31513 NM_080284 23460 Hs.709514 NM_080284 ENSG00000154262 ABCA6 EST155051 ATP binding cassette subfamily A member 6 protein-coding 156.5-33 chr13 102975471 102975911 + 0.5 NA Intergenic Intergenic 90726 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 146.25-104 chr9 69368280 69368735 + 0.5 NA intron (NM_001127608, intron 2 of 10) L1MA4A|LINE|L1 39182 NM_004816 9413 Hs.118003 NM_004816 ENSG00000135063 FAM189A2 C9orf61|X123 family with sequence similarity 189 member A2 protein-coding 190.25-48 chr7 8974425 8974936 + 0.5 NA Intergenic AluSx3|SINE|Alu 541071 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 195-13 chr12 58627309 58627935 + 0.5 NA intron (NR_120452, intron 1 of 7) MIR|SINE|MIR 35920 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 169.5-95 chr8 127672470 127672985 + 0.5 NA Intergenic GA-rich|Low_complexity|Low_complexity 61240 NR_117101 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 161.75-6 chr10 88721016 88721657 + 0.5 NA Intergenic Intergenic -3208 NM_001080518 643414 Hs.632092 NM_001080518 ENSG00000204021 LIPK LIPL2|bA186O14.2 lipase family member K protein-coding 150.75-52 chr20 56925605 56926161 + 0.5 NA Intergenic CpG -287813 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 162.25-54 chr3 170940154 170940658 + 0.5 NA Intergenic L1MC3|LINE|L1 -31769 NM_020390 56648 Hs.164144 NM_020390 ENSG00000163577 EIF5A2 EIF-5A2|eIF5AII eukaryotic translation initiation factor 5A2 protein-coding 148.5-19 chr12 30682477 30682844 + 0.5 NA intron (NM_006390, intron 3 of 24) intron (NM_006390, intron 3 of 24) -5416 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 163-42 chr2 55486745 55487249 + 0.5 NA Intergenic L1MD3|LINE|L1 -32598 NM_001282761 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 161.75-81 chr6 40296618 40297105 + 0.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR 59145 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 217-21 chr4 23595701 23596375 + 0.5 NA Intergenic Intergenic 285254 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 301.5 chr14 47699383 47700114 + 0.5 NA Intergenic MSTB|LTR|ERVL-MaLR -24794 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 173.25-38 chr2 171044562 171045189 + 0.5 NA intron (NM_001136555, intron 9 of 18) L2c|LINE|L2 22098 NM_001136555 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 191.75-12 chr11 8865040 8865499 + 0.5 NA intron (NM_005418, intron 2 of 22) intron (NM_005418, intron 2 of 22) 45682 NM_005418 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 147.5-95 chr7 45611195 45611598 + 0.5 NA intron (NM_001281768, intron 4 of 9) intron (NM_001281768, intron 4 of 9) 37028 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 199.5-13 chr14 64471907 64472496 + 0.5 NA 3' UTR (NM_004857, exon 2 of 2) 3' UTR (NM_004857, exon 2 of 2) 6702 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 167.75-62 chr4 36965143 36965628 + 0.5 NA Intergenic L1MC1|LINE|L1 -36394 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 152-37 chr2 53113584 53114004 + 0.5 NA Intergenic Intergenic -411179 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 148.75-44 chr2 30221513 30221834 + 0.5 NA Intergenic Intergenic -9861 NM_030915 81606 Hs.567598 NM_030915 ENSG00000213626 LBH - LBH regulator of WNT signaling pathway protein-coding 148-73 chr5 27736296 27736872 + 0.5 NA Intergenic MLT1H2|LTR|ERVL-MaLR 264292 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 149.75-54 chr3 72432781 72433254 + 0.5 NA intron (NM_012234, intron 1 of 3) MIRb|SINE|MIR 13606 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 216.25-2 chr1 196865716 196866331 + 0.5 NA Intergenic L1MD|LINE|L1 -22029 NM_001201550 10877 Hs.710100 NM_006684 ENSG00000134365 CFHR4 CFHL4|FHR-4|FHR4 complement factor H related 4 protein-coding 162.5-57 chr3 97224310 97224695 + 0.5 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) -215105 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 154-12 chr1 216503387 216503981 + 0.5 NA 3' UTR (NM_001350122, exon 10 of 10) 3' UTR (NM_001350122, exon 10 of 10) -80236 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 171.25-44 chr4 79767390 79767804 + 0.5 NA Intergenic L1M5|LINE|L1 -59874 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 243.75-13 chr4 115571303 115572184 + 0.5 NA Intergenic Intergenic -458123 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 212.5-30 chr3 28806982 28807464 + 0.5 NA Intergenic L1ME3A|LINE|L1 231945 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 190.5-32 chr20 39845407 39845939 + 0.5 NA Intergenic L2a|LINE|L2 -158788 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 164-66 chr5 126355603 126356119 + 0.5 NA Intergenic L2a|LINE|L2 -4259 NM_001146319 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 185.5-9 chr10 9170734 9171434 + 0.5 NA Intergenic Intergenic -104529 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 173.75-76 chrX 57500410 57500811 + 0.5 NA Intergenic ERV24_Prim-int|LTR|ERV1 -91226 NM_007157 158586 Hs.156257 NM_007157 ENSG00000198455 ZXDB ZNF905|dJ83L6.1 zinc finger X-linked duplicated B protein-coding 247.5-19 chr18 8241244 8241913 + 0.5 NA intron (NM_002845, intron 14 of 30) MER102b|DNA|hAT-Charlie 125456 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 201.5-66 chr8 137790647 137791238 + 0.5 NA Intergenic Intergenic 292603 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 151.75-116 chr9 17691744 17692274 + 0.5 NA intron (NM_003026, intron 1 of 8) L1ME4b|LINE|L1 112943 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 156.5-66 chr3 87675821 87676277 + 0.5 NA Intergenic Intergenic -116657 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 198.5-7 chr10 55817940 55818403 + 0.5 NA Intergenic L1M4b|LINE|L1 -190229 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 207.5-48 chrX 93186820 93187316 + 0.5 NA Intergenic Intergenic -362165 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 193.5-9 chr11 16534117 16534636 + 0.5 NA intron (NM_001367872, intron 3 of 16) intron (NM_001367872, intron 3 of 16) -57988 NM_033326 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 167.25-79 chr8 81065037 81065485 + 0.5 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 46807 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 174.5-78 chr8 16665441 16665846 + 0.5 NA Intergenic Intergenic 336702 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 165.75-36 chr17 54485436 54485846 + 0.5 NA Intergenic A-rich|Low_complexity|Low_complexity -415050 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 191.5-8 chr10 18513295 18513970 + 0.5 NA intron (NM_201597, intron 6 of 13) HSMAR1|DNA|TcMar-Mariner 113057 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 191-15 chr11 110630335 110630885 + 0.5 NA intron (NM_020809, intron 4 of 15) intron (NM_020809, intron 4 of 15) 81215 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 193.75-58 chr8 87705984 87706571 + 0.5 NA Intergenic THE1C-int|LTR|ERVL-MaLR 167738 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 174-69 chr8 87010493 87010970 + 0.5 NA intron (NM_173538, intron 4 of 10) AluSx|SINE|Alu 144316 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 175.25-35 chr2 98782992 98783613 + 0.5 NA Intergenic AluY|SINE|Alu -11404 NR_126337 101927070 Hs.469395 NR_126337 LINC02611 - long intergenic non-protein coding RNA 2611 ncRNA 147.5-3 chr1 162579464 162579845 + 0.5 NA intron (NM_003115, intron 4 of 9) intron (NM_003115, intron 4 of 9) 17755 NM_001324114 6675 Hs.492859 NM_003115 ENSG00000117143 UAP1 AGX|AGX1|AGX2|SPAG2 UDP-N-acetylglucosamine pyrophosphorylase 1 protein-coding 163.25-37 chr2 25769966 25770462 + 0.5 NA intron (NM_001369346, intron 4 of 10) intron (NM_001369346, intron 4 of 10) 24477 NM_001369347 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 153.25-85 chr4 74258061 74258646 + 0.5 NA intron (NM_001144978, intron 6 of 7) L1M3e|LINE|L1 -50117 NM_001270993 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 183.25-15 chr12 107835210 107835711 + 0.5 NA Intergenic Intergenic 61075 NM_203436 121549 Hs.149910 NM_203436 ENSG00000187855 ASCL4 HASH4|bHLHa44 achaete-scute family bHLH transcription factor 4 protein-coding 187-15 chr18 4828935 4829391 + 0.5 NA Intergenic L1ME2|LINE|L1 -252019 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 146-70 chr5 125074321 125074772 + 0.5 NA intron (NR_109882, intron 2 of 5) L1MA9|LINE|L1 37715 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 154-90 chr5 129859330 129859868 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -44866 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 162.5-47 chr2 211703064 211703589 + 0.5 NA intron (NM_001042599, intron 11 of 26) intron (NM_001042599, intron 11 of 26) 723034 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 146.25-23 chr13 101609993 101610481 + 0.5 NA intron (NM_001271754, intron 6 of 10) intron (NM_001271754, intron 6 of 10) 120285 NM_001271756 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 163-49 chr2 147162009 147162594 + 0.5 NA Intergenic Ricksha_0|DNA|MULE-MuDR 575244 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 182.25-37 chr3 103754679 103755317 + 0.5 NA Intergenic L1ME3G|LINE|L1 -230882 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 159.5-63 chr4 52595656 52596201 + 0.5 NA 3' UTR (NM_022832, exon 9 of 9) 3' UTR (NM_022832, exon 9 of 9) 60611 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 245-8 chr15 83461524 83462315 + 0.5 NA intron (NM_003027, intron 1 of 8) LTR49-int|LTR|ERV1 14578 NM_003027 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 155.5-30 chr13 101907782 101908370 + 0.5 NA intron (NM_175929, intron 1 of 4) L2|LINE|L2 8569 NM_004115 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 187.25-41 chr3 70870048 70870678 + 0.5 NA Intergenic Intergenic 194561 NM_001244813 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 156.75-15 chr10 62157970 62158450 + 0.5 NA Intergenic Intergenic 108853 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 236.75-29 chr7 122566723 122567400 + 0.5 NA intron (NM_001167940, intron 7 of 29) MIR3|SINE|MIR 132056 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 211.25-31 chr4 32452518 32452983 + 0.5 NA Intergenic Intergenic 101712 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 146.25-37 chr18 2875293 2875858 + 0.5 NA intron (NM_032048, intron 2 of 7) intron (NM_032048, intron 2 of 7) 28569 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 157-6 chr1 186561914 186562493 + 0.5 NA Intergenic L2|LINE|L2 -101089 NM_002597 5132 Hs.654381 NM_002597 ENSG00000116703 PDC MEKA|PHD|PhLOP|PhLP phosducin protein-coding 151-104 chr8 119758166 119758509 + 0.5 NA intron (NM_003184, intron 20 of 25) intron (NM_003184, intron 20 of 25) 74504 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 153-42 chr2 183524386 183524889 + 0.5 NA Intergenic L1ME4b|LINE|L1 400194 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 208.75-35 chr7 38974037 38974507 + 0.5 NA Intergenic Intergenic -3637 NM_001166018 11281 Hs.137106 NM_007252 ENSG00000106536 POU6F2 RPF-1|WT5|WTSL POU class 6 homeobox 2 protein-coding 174.25-30 chr2 109486537 109486960 + 0.5 NA intron (NM_001099289, intron 8 of 9) intron (NM_001099289, intron 8 of 9) 126919 NM_001321515 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 148-82 chr6 120905744 120906106 + 0.5 NA Intergenic Intergenic 428555 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 151.75-25 chr13 59092975 59093528 + 0.5 NA Intergenic AluJb|SINE|Alu -860134 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 165.5-52 chr2 173957092 173957695 + 0.5 NA intron (NM_003111, intron 3 of 6) intron (NM_003111, intron 3 of 6) 6487 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 172.75-69 chr8 84866333 84866864 + 0.5 NA intron (NM_001287244, intron 5 of 7) MIR|SINE|MIR 160671 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 151-66 chr3 180661160 180661626 + 0.5 NA intron (NM_181426, intron 3 of 19) intron (NM_181426, intron 3 of 19) 18096 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 164.75-82 chr7 31403728 31404278 + 0.5 NA Intergenic L1MB7|LINE|L1 -63277 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 187.5-41 chr21 28641288 28641893 + 0.5 NA Intergenic MamGypLTR1b|LTR|Gypsy 102272 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 157.25-4 chr1 101148685 101149103 + 0.5 NA Intergenic Intergenic 87634 NR_104626 101928370 Hs.534209 NR_104626 LOC101928370 - uncharacterized LOC101928370 ncRNA 199.25-70 chr8 126006027 126006656 + 0.5 NA Intergenic L1M5|LINE|L1 -55144 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 219.5-14 chr2 48868200 48868828 + 0.5 NA Intergenic AluJb|SINE|Alu -112790 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 155.75-19 chr11 38626388 38626881 + 0.5 NA intron (NR_120554, intron 3 of 4) intron (NR_120554, intron 3 of 4) 19722 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 180-70 chr8 84531670 84532294 + 0.5 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) 116498 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 221.5-35 chr3 112360122 112360638 + 0.5 NA intron (NR_158642, intron 6 of 6) MER5C|DNA|hAT-Charlie 27224 NM_001365852 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 193.5-49 chr4 38233435 38233945 + 0.5 NA Intergenic Intergenic 113736 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 163.5-28 chr14 62894593 62895147 + 0.5 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 150588 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 167.75-11 chr10 113758867 113759382 + 0.5 NA intron (NM_001193435, intron 2 of 10) AluSq|SINE|Alu -5695 NM_182601 79949 Hs.228320 NM_024889 ENSG00000148735 PLEKHS1 C10orf81|HEL185 pleckstrin homology domain containing S1 protein-coding 178.5-24 chr14 68295315 68295821 + 0.5 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 333219 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 188.5-12 chr11 20506102 20506699 + 0.5 NA intron (NM_005788, intron 15 of 15) intron (NM_005788, intron 15 of 15) -93000 NM_004211 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 249.5-32 chr9 29154582 29155240 + 0.5 NA intron (NM_001354574, intron 1 of 5) MIRb|SINE|MIR 57388 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 146.75-70 chr3 8799384 8799809 + 0.5 NA Intergenic Intergenic -29982 NM_001354654 5021 Hs.2820 NM_000916 ENSG00000180914 OXTR OT-R oxytocin receptor protein-coding 179.5-7 chr10 44295292 44295864 + 0.5 NA TTS (NM_001258000) TTS (NM_001258000) 2828 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 150.25-38 chr15 33332861 33333408 + 0.5 NA intron (NM_001243996, intron 1 of 102) L1PA12|LINE|L1 22167 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 152.25-17 chr12 3781027 3781624 + 0.5 NA Intergenic L1ME1|LINE|L1 -28216 NM_001144958 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 190.75-8 chr1 237816365 237816892 + 0.5 NA intron (NM_001035, intron 100 of 104) AluSx1|SINE|Alu -45547 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 185.25-46 chr2 124496902 124497444 + 0.5 NA intron (NM_001367498, intron 7 of 23) intron (NM_001367498, intron 7 of 23) 471886 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 166.75-101 chr9 131690885 131691335 + 0.5 NA intron (NM_001304275, intron 1 of 23) MER65-int|LTR|ERV1 18732 NM_198679 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 184.5-31 chr15 43964932 43965382 + 0.5 NA intron (NM_032892, intron 1 of 13) intron (NM_032892, intron 1 of 13) -86986 NR_003571 728758 Hs.658099 NR_003571 PIN4P1 - peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1 pseudo 181.75-10 chr10 39114283 39114705 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 417898 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 158-96 chr9 102435235 102435851 + 0.5 NA Intergenic MSTB1|LTR|ERVL-MaLR -84094 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 186.5-10 chr10 50536508 50537015 + 0.5 NA intron (NM_147156, intron 2 of 10) intron (NM_147156, intron 2 of 10) 87195 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 193.5-10 chr11 24570243 24570939 + 0.5 NA intron (NM_001252008, intron 1 of 11) L3|LINE|CR1 73538 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 166-54 chr5 15313919 15314335 + 0.5 NA Intergenic L1PB1|LINE|L1 -47567 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 182-40 chr4 79452584 79453186 + 0.5 NA Intergenic Intergenic -39708 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 186.5-29 chr2 159484375 159484873 + 0.5 NA intron (NM_001329858, intron 2 of 36) intron (NM_001329858, intron 2 of 36) -130670 NR_110587 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 146.25-69 chr3 186346817 186347145 + 0.5 NA intron (NM_001346, intron 1 of 24) L1M6|LINE|L1 15253 NM_001346 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 146-22 chr14 61923856 61924345 + 0.5 NA intron (NM_001367661, intron 2 of 8) intron (NM_001367661, intron 2 of 8) -3595 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 198.25-39 chr4 179903528 179904287 + 0.5 NA Intergenic L1MB8|LINE|L1 1255242 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 170-35 chr20 7821596 7822073 + 0.5 NA Intergenic Intergenic 118624 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 150.25-32 chr14 48918032 48918508 + 0.5 NA Intergenic L1PB3|LINE|L1 668110 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 168.25-58 chr5 58951752 58952217 + 0.5 NA Intergenic L1MA4A|LINE|L1 47914 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 160.25-2 chr1 60245813 60246341 + 0.5 NA Intergenic L2a|LINE|L2 -172307 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 156.25-22 chr14 56533013 56533508 + 0.5 NA intron (NR_135241, intron 1 of 1) intron (NR_135241, intron 1 of 1) 18929 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 146-39 chr2 16068430 16069009 + 0.5 NA intron (NR_126559, intron 1 of 3) L2b|LINE|L2 18292 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 181.75-41 chr3 16695129 16695756 + 0.5 NA Intergenic LTR8|LTR|ERV1 -90019 NM_001351 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 193.25-22 chr16 51802212 51802732 + 0.5 NA Intergenic Intergenic 39953 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 173.5-16 chr12 25565807 25566300 + 0.5 NA intron (NM_001352234, intron 1 of 8) L1M1|LINE|L1 -12770 NM_152590 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 170.75-24 chr16 60071094 60071581 + 0.5 NA Intergenic Intergenic 215984 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 162.5-44 chr2 143295698 143296338 + 0.5 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 166599 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 235.75-21 chr3 98454257 98454964 + 0.5 NA Intergenic L2b|LINE|L2 -14870 NM_001004736 26339 Hs.621533 NM_001004736 ENSG00000232382 OR5K1 HSHTPCRX10|HTPCRX10|OR3-8 olfactory receptor family 5 subfamily K member 1 protein-coding 162-20 chr12 85189851 85190362 + 0.5 NA intron (NM_001079910, intron 24 of 26) (ATATATA)n|Simple_repeat|Simple_repeat -90114 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 278-13 chr8 112512616 112513393 + 0.5 NA intron (NM_001363185, intron 26 of 66) Tigger1|DNA|TcMar-Tigger -130489 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 217.5-2 chr1 178048375 178048899 + 0.5 NA Intergenic Intergenic -10630 NM_001356506 111240474 NM_001356505 CRYZL2P-SEC16B - CRYZL2P-SEC16B readthrough protein-coding 213.25-2 chr1 78714725 78715355 + 0.5 NA Intergenic Intergenic 65209 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 178.5-40 chr2 162641416 162642098 + 0.5 NA intron (NM_033272, intron 2 of 15) L1MD1|LINE|L1 -127179 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 233.75-21 chr4 74847111 74847847 + 0.5 NA Intergenic MamGypLTR3|LTR|Gypsy -52956 NM_001729 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 219.25-19 chr18 79841649 79842191 + 0.5 NA Intergenic L1M4c|LINE|L1 -21748 NM_012283 26251 Hs.247905 NM_012283 ENSG00000178342 KCNG2 KCNF2|KV6.2 potassium voltage-gated channel modifier subfamily G member 2 protein-coding 174.25-55 chr5 155984282 155984931 + 0.5 NA Intergenic Intergenic -342151 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 176.75-23 chr14 58551253 58551691 + 0.5 NA TTS (NM_001364701) TTS (NM_001364701) -82596 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 148.75-14 chr10 82624650 82625071 + 0.5 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -391940 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 162.25-76 chr5 109330892 109331318 + 0.5 NA Intergenic Intergenic -4736 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 193.5-8 chr10 123463717 123464165 + 0.5 NA Intergenic MIR|SINE|MIR -202414 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 223.5-12 chr12 4357097 4357595 + 0.5 NA 3' UTR (NM_020375, exon 6 of 6) 3' UTR (NM_020375, exon 6 of 6) 22366 NM_020638 8074 Hs.287370 NM_020638 ENSG00000118972 FGF23 ADHR|FGFN|HFTC2|HPDR2|HYPF|PHPTC fibroblast growth factor 23 protein-coding 167.25-18 chr12 52584948 52585373 + 0.5 NA TTS (NM_001146225) TTS (NM_001146225) -11317 NM_175053 121391 Hs.660125 NM_175053 ENSG00000170484 KRT74 ADWH|HTSS2|HYPT3|K6IRS4|KRT5C|KRT6IRS4 keratin 74 protein-coding 230.75-48 chr9 83538579 83539122 + 0.5 NA promoter-TSS (NM_001244959) promoter-TSS (NM_001244959) -449 NM_001244959 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 152-5 chr10 18938033 18938540 + 0.5 NA Intergenic L1MCb|LINE|L1 -110515 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 193.25-67 chr9 71389433 71389920 + 0.5 NA intron (NM_001366143, intron 1 of 25) L1PB1|LINE|L1 57295 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 172-54 chr3 99426352 99426741 + 0.5 NA Intergenic Intergenic -212048 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 250.5-21 chr3 108501882 108502528 + 0.5 NA intron (NM_014981, intron 3 of 41) intron (NM_014981, intron 3 of 41) 27117 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 205.75-39 chr3 131505725 131506412 + 0.5 NA Intergenic Intergenic -3097 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 154.75-43 chr2 67105126 67105662 + 0.5 NA intron (NR_110564, intron 1 of 4) intron (NR_110564, intron 1 of 4) 18948 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 164.75-73 chr6 70061648 70062280 + 0.5 NA intron (NM_001858, intron 14 of 50) intron (NM_001858, intron 14 of 50) 195408 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 205-29 chr2 166787624 166788305 + 0.5 NA Intergenic Intergenic -100523 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 153-58 chr4 28670170 28670703 + 0.5 NA Intergenic MER31A|LTR|ERV1 -149146 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 161.75-77 chr5 63994598 63995188 + 0.5 NA Intergenic Intergenic -32601 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 170-52 chr5 175241371 175241800 + 0.5 NA Intergenic AluSg|SINE|Alu 202597 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 153.75-10 chr12 45458775 45459271 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 166333 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 229 chr1 96547616 96548396 + 0.5 NA Intergenic Intergenic -173599 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 223.25-27 chr5 43137360 43138176 + 0.5 NA intron (NM_001330716, intron 3 of 7) L1MB1|LINE|L1 16203 NM_001330715 7690 Hs.535804 NM_003432 ENSG00000172262 ZNF131 ZBTB35|pHZ-10 zinc finger protein 131 protein-coding 169.5-24 chr12 2153562 2154092 + 0.5 NA intron (NM_199460, intron 3 of 49).2 MIRc|SINE|MIR 69654 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 178.75-52 chr5 2952978 2953668 + 0.5 NA Intergenic L1MA5|LINE|L1 35469 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 182.25-49 chr6 113976582 113977210 + 0.5 NA intron (NR_125845, intron 1 of 9) MER8|DNA|TcMar-Tigger -5748 NM_001527 3066 Hs.3352 NM_001527 ENSG00000196591 HDAC2 HD2|KDAC2|RPD3|YAF1 histone deacetylase 2 protein-coding 159-24 chr15 93683629 93684079 + 0.5 NA Intergenic Intergenic -172706 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 181.5-26 chr14 95270098 95270713 + 0.5 NA intron (NM_024734, intron 1 of 12) L1MB8|LINE|L1 49503 NM_024734 79789 Hs.301478 NM_024734 ENSG00000165959 CLMN - calmin protein-coding 178.5-45 chr21 20533546 20533993 + 0.5 NA Intergenic L1MC3|LINE|L1 269339 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 179.75-39 chr4 32759864 32760511 + 0.5 NA Intergenic AluJb|SINE|Alu 409149 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 166.75-50 chr3 73539332 73539868 + 0.5 NA intron (NR_121660, intron 1 of 1) MLT1H|LTR|ERVL-MaLR 18278 NR_121660 101927296 Hs.662049 NR_121660 LOC101927296 - uncharacterized LOC101927296 ncRNA 171.5-6 chr1 125168122 125168702 + 0.5 NA Intergenic Intergenic 3649300 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 157.5-72 chr5 8671882 8672293 + 0.5 NA Intergenic Intergenic -167645 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 163-56 chr3 122871968 122872374 + 0.5 NA intron (NM_032839, intron 7 of 8) intron (NM_032839, intron 7 of 8) -14342 NR_024618 100129550 Hs.61558 NR_024618 ENSG00000273033 LINC02035 - long intergenic non-protein coding RNA 2035 ncRNA 161-84 chr7 143314748 143315106 + 0.5 NA intron (NM_001130026, intron 8 of 10) intron (NM_001130026, intron 8 of 10) -1184 NM_000083 1180 Hs.121483 NM_000083 ENSG00000188037 CLCN1 CLC1 chloride voltage-gated channel 1 protein-coding 151.5-19 chr11 106436806 106437259 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR 185625 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 174.75-13 chr10 81185272 81185869 + 0.5 NA Intergenic Intergenic 535773 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 162.5-26 chr14 36213783 36214218 + 0.5 NA Intergenic Intergenic -37349 NR_049735 100886964 Hs.742592 NR_049735 PTCSC3 - papillary thyroid carcinoma susceptibility candidate 3 ncRNA 156.5-83 chr5 52711758 52712187 + 0.5 NA Intergenic Charlie4z|DNA|hAT-Charlie -75944 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 251.75-9 chr13 90588737 90589513 + 0.5 NA Intergenic Intergenic 95837 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 151-100 chr8 92524619 92525084 + 0.5 NA Intergenic HAL1|LINE|L1 130643 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 152.75-36 chr15 72072939 72073487 + 0.5 NA intron (NM_006901, intron 1 of 41) intron (NM_006901, intron 1 of 41) -41045 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 163.5-107 chr7 27722067 27722510 + 0.5 NA Intergenic L1M5|LINE|L1 -17085 NM_001206901 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 154.75-111 chrX 57972174 57972612 + 0.5 NA Intergenic L1MA4A|LINE|L1 -61760 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 166-77 chr8 82928381 82928765 + 0.5 NA intron (NR_134295, intron 2 of 3) intron (NR_134295, intron 2 of 3) 16469 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 226.25-3 chr1 83838614 83839364 + 0.5 NA intron (NR_119374, intron 2 of 2) intron (NR_119374, intron 2 of 2) 21557 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 171-42 chr3 73513891 73514462 + 0.5 NA intron (NM_015009, intron 3 of 9) intron (NM_015009, intron 3 of 9) -7146 NR_121660 101927296 Hs.662049 NR_121660 LOC101927296 - uncharacterized LOC101927296 ncRNA 246-12 chr6 146216394 146217027 + 0.5 NA intron (NM_001278065, intron 3 of 9) intron (NM_001278065, intron 3 of 9) 187512 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 159.5-98 chr8 97263838 97264302 + 0.5 NA intron (NR_125390, intron 2 of 2) (TATC)n|Simple_repeat|Simple_repeat 13858 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 206-10 chr14 66529578 66530209 + 0.5 NA intron (NM_001024218, intron 1 of 21) L1PA7|LINE|L1 22486 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 201.5-61 chr6 137574996 137575602 + 0.5 NA Intergenic Intergenic -80905 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 148-94 chr8 140860070 140860571 + 0.5 NA intron (NR_148037, intron 6 of 34) L1M5|LINE|L1 -127667 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 168.5-56 chr2 168808099 168808521 + 0.5 NA intron (NM_052946, intron 1 of 14) intron (NM_052946, intron 1 of 14) 5713 NM_052946 115677 Hs.189780 NM_052946 ENSG00000163072 NOSTRIN DaIP2 nitric oxide synthase trafficking protein-coding 156-42 chr2 157510249 157510791 + 0.5 NA Intergenic L1ME2|LINE|L1 -66431 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 180.25-70 chr7 111256896 111257537 + 0.5 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 166089 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 173.75-65 chr7 88206212 88206829 + 0.5 NA intron (NM_198901, intron 7 of 7) intron (NM_198901, intron 7 of 7) -10140 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 147.5-92 chr6 161666497 161666877 + 0.5 NA intron (NM_004562, intron 7 of 11) LTR84b|LTR|ERVL 195710 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 171-58 chr6 120388550 120389019 + 0.5 NA Intergenic Intergenic 373605 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 154-29 chr14 43006870 43007331 + 0.5 NA Intergenic HUERS-P3-int|LTR|ERV1 1400244 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 183.75-97 chr8 126421707 126422347 + 0.5 NA Intergenic Intergenic 96532 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 203-46 chr9 30512163 30512755 + 0.5 NA Intergenic Intergenic -104005 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 149.75-11 chr10 52221560 52222133 + 0.5 NA intron (NM_001098512, intron 9 of 17) intron (NM_001098512, intron 9 of 17) 92282 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 155.25-20 chr12 46513176 46513606 + 0.5 NA intron (NR_125380, intron 3 of 3) L1PA14|LINE|L1 129284 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 245.5 chr1 24764885 24765590 + 0.5 NA intron (NM_013943, intron 1 of 5) MIR|SINE|MIR 19790 NM_013943 25932 Hs.440544 NM_013943 ENSG00000169504 CLIC4 CLIC4L|H1|MTCLIC|huH1|p64H1 chloride intracellular channel 4 protein-coding 159.25-64 chr5 53583255 53583841 + 0.5 NA intron (NR_134475, intron 2 of 5) intron (NR_134475, intron 2 of 5) 22909 NR_134475 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 243.5-5 chr12 41862938 41863683 + 0.5 NA Intergenic Intergenic 99121 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 172.25-8 chr11 31288586 31289189 + 0.5 NA intron (NM_181807, intron 7 of 8) intron (NM_181807, intron 7 of 8) 80852 NM_001367979 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 192.25-37 chr2 136932076 136932583 + 0.5 NA intron (NM_001316349, intron 2 of 27) intron (NM_001316349, intron 2 of 27) 166784 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 177.75-25 chr18 3908287 3908940 + 0.5 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) 23260 NR_106776 102465430 NR_106776 ENSG00000275518 MIR6718 hsa-mir-6718 microRNA 6718 ncRNA 163-28 chr14 60255764 60256271 + 0.5 NA intron (NM_177951, intron 2 of 3) intron (NM_177951, intron 2 of 3) 6796 NM_021003 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 298.25-8 chr4 30338293 30339127 + 0.5 NA Intergenic Intergenic -381659 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 155.25-3 chr1 115081257 115081850 + 0.5 NA intron (NM_005725, intron 1 of 7) MIR|SINE|MIR 7947 NM_001308315 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 156-21 chr13 58917188 58917669 + 0.5 NA Intergenic L1MB2|LINE|L1 -684311 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 164.75-66 chr5 17445271 17445744 + 0.5 NA intron (NR_134270, intron 1 of 2) intron (NR_134270, intron 1 of 2) 1497 NR_134271 102723526 NR_134270 ENSG00000249662 LINC02218 - long intergenic non-protein coding RNA 2218 ncRNA 164.75-12 chr10 111616354 111616910 + 0.5 NA Intergenic Intergenic 502341 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 185-72 chr9 28660254 28660754 + 0.5 NA intron (NM_152570, intron 2 of 6) L1ME3E|LINE|L1 58801 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 180.25-64 chr6 121065766 121066424 + 0.5 NA Intergenic Intergenic 268385 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 334 chr12 38917472 38918615 + 0.5 NA Intergenic Intergenic -12452 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 155-29 chr14 43306575 43306993 + 0.5 NA Intergenic MamGypsy2-I|LTR|Gypsy 1200499 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 158.75-57 chr4 32598780 32599158 + 0.5 NA Intergenic Intergenic 247931 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 231.5-24 chr4 68212740 68213592 + 0.5 NA TTS (NR_015446) TTS (NR_015446) 4914 NR_104048 401136 Hs.652046 NM_001129907 ENSG00000250026 TMPRSS11BNL - TMPRSS11B N-terminal like, pseudogene pseudo 152.25-58 chr21 35027734 35028307 + 0.5 NA intron (NM_001754, intron 2 of 8) intron (NM_001754, intron 2 of 8) 11406 NR_026812 80215 Hs.672131 NM_025143 RUNX1-IT1 C21orf96 RUNX1 intronic transcript 1 ncRNA 197.75-44 chr3 187010868 187011430 + 0.5 NA intron (NM_173216, intron 2 of 7) AluSz|SINE|Alu -10706 NM_003032 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 242-9 chr14 82838306 82838907 + 0.5 NA Intergenic Intergenic 195974 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 174.25-17 chr14 45072373 45073064 + 0.5 NA intron (NR_131765, intron 19 of 19) AluSx1|SINE|Alu -11398 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 152-80 chr6 48647348 48647818 + 0.5 NA Intergenic L1PA14|LINE|L1 -578894 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 151-8 chr10 65141198 65141674 + 0.5 NA Intergenic L1MA10|LINE|L1 -216918 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 173.75-73 chr8 125024273 125024711 + 0.5 NA 3' UTR (NM_001330609, exon 28 of 28) 3' UTR (NM_001330609, exon 28 of 28) 25987 NM_003129 6713 Hs.71465 NM_003129 ENSG00000104549 SQLE - squalene epoxidase protein-coding 186.25-56 chr6 141464023 141464582 + 0.5 NA Intergenic Intergenic 624497 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 171.75-38 chr19 32239485 32239946 + 0.5 NA Intergenic Intergenic -105895 NM_001136156 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 243-18 chr5 10160832 10161441 + 0.5 NA Intergenic Intergenic 88752 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 160.5-62 chr3 89521875 89522443 + 0.5 NA Intergenic Intergenic 414538 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 160-19 chr14 56926365 56926904 + 0.5 NA intron (NR_029385, intron 3 of 3) L1MB3|LINE|L1 113476 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 149.75-108 chr9 82743465 82744033 + 0.5 NA Intergenic Intergenic 319393 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 165.75-105 chr8 88884094 88884674 + 0.5 NA Intergenic Intergenic -556901 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 193-48 chr7 3543748 3544328 + 0.5 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 242786 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 146.75-81 chr4 91566210 91566582 + 0.5 NA intron (NM_001145065, intron 10 of 10) L1PA14|LINE|L1 710906 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 179.75-67 chr8 139895519 139896227 + 0.5 NA intron (NM_001160372, intron 20 of 22) intron (NM_001160372, intron 20 of 22) -192750 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 189.75-20 chr11 27212093 27212710 + 0.5 NA intron (NR_125767, intron 2 of 4) MIRb|SINE|MIR 6367 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 160.75-14 chr11 15792774 15793242 + 0.5 NA Intergenic MLT1I-int|LTR|ERVL-MaLR 149123 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 206.75-30 chr2 194059500 194059990 + 0.5 NA Intergenic Intergenic -284524 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 147.75-55 chr2 76954036 76954419 + 0.5 NA intron (NR_146416, intron 1 of 1) L1MB1|LINE|L1 -31738 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 197.75-17 chr14 37349590 37350078 + 0.5 NA intron (NM_138731, intron 10 of 13) L2a|LINE|L2 151897 NM_138731 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 154.5 chr1 34565175 34565666 + 0.5 NA Intergenic (TTATA)n|Simple_repeat|Simple_repeat 104274 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 147.75-75 chr4 32439386 32439870 + 0.5 NA Intergenic Intergenic 88590 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 159.25-42 chr20 48833119 48833746 + 0.5 NA Intergenic Intergenic -5433 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 195-25 chr2 55357643 55358206 + 0.5 NA intron (NM_001254943, intron 7 of 33) intron (NM_001254943, intron 7 of 33) 61932 NM_001135597 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL coiled-coil domain containing 88A protein-coding 155.75-98 chr8 29028919 29029434 + 0.5 NA intron (NM_001324384, intron 6 of 10) intron (NM_001324384, intron 6 of 10) 137862 NM_001324382 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 264.75-24 chr8 105213379 105214158 + 0.5 NA Intergenic Intergenic -104670 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 176-60 chr6 116726753 116727368 + 0.5 NA intron (NM_001366306, intron 12 of 13) intron (NM_001366306, intron 12 of 13) 38659 NM_001085480 221303 Hs.126712 NM_001085480 ENSG00000183807 FAM162B C6orf189|bA86F4.2 family with sequence similarity 162 member B protein-coding 147.25-29 chr13 43939830 43940340 + 0.5 NA Intergenic Intergenic 60181 NM_001350646 144811 Hs.210586 NM_153218 ENSG00000179630 LACC1 C13orf31|FAMIN laccase domain containing 1 protein-coding 153.25-32 chr12 23808460 23808942 + 0.5 NA intron (NM_152989, intron 6 of 17) intron (NM_152989, intron 6 of 17) 140969 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 206.75 chr1 48582385 48583006 + 0.5 NA intron (NM_001323575, intron 11 of 12) MIRb|SINE|MIR -110487 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 152.25-83 chr5 124134602 124135000 + 0.5 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 303719 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 200.25-5 chr10 34284180 34284701 + 0.5 NA intron (NM_001184790, intron 18 of 22) intron (NM_001184790, intron 18 of 22) -511760 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 191.5-32 chr20 46143975 46144413 + 0.5 NA Intergenic Intergenic 25880 NM_001362758 958 Hs.472860 NM_001250 ENSG00000101017 CD40 Bp50|CDW40|TNFRSF5|p50 CD40 molecule protein-coding 149.25-30 chr14 60789519 60789929 + 0.5 NA intron (NM_001177963, intron 1 of 6) intron (NM_001177963, intron 1 of 6) 54963 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 171.5-12 chr10 9173260 9173702 + 0.5 NA Intergenic Intergenic -102132 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 149-28 chr15 86703467 86703941 + 0.5 NA intron (NM_152336, intron 23 of 24) THE1B|LTR|ERVL-MaLR -229176 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 160.5-12 chr1 234907988 234908323 + 0.5 NA Intergenic Intergenic 55844 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 184.25-12 chr11 9267454 9267893 + 0.5 NA Intergenic AluSc|SINE|Alu -2323 NM_001348750 23258 Hs.501857 NM_015213 ENSG00000184014 DENND5A EIEE49|RAB6IP1 DENN domain containing 5A protein-coding 187.25-65 chr8 46791366 46791955 + 0.5 NA Intergenic Intergenic -49226 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 236.5-6 chr12 46111172 46111693 + 0.5 NA Intergenic L1PB3|LINE|L1 -120858 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 153-11 chr10 91613146 91613571 + 0.5 NA Intergenic Intergenic -1898 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 214.25-36 chr7 109393581 109394072 + 0.5 NA Intergenic Intergenic -509239 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 154-49 chr2 40052316 40052656 + 0.5 NA intron (NR_038441, intron 2 of 4) L1MEc|LINE|L1 134852 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 216.5-26 chr3 135431739 135432390 + 0.5 NA Intergenic L1PB4|LINE|L1 -533664 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 186.5-4 chr1 73068157 73068880 + 0.5 NA Intergenic Intergenic -237652 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 190.75-34 chr2 157536348 157536862 + 0.5 NA intron (NM_001111031, intron 8 of 8) L1ME3E|LINE|L1 60955 NM_001111031 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 207-3 chr10 43694110 43694721 + 0.5 NA Intergenic Intergenic -45534 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 213.25-30 chr3 156347534 156348360 + 0.5 NA intron (NM_172159, intron 1 of 13) L2a|LINE|L2 56910 NM_001308222 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 165.5-14 chr10 15655895 15656314 + 0.5 NA intron (NM_001291494, intron 9 of 28) intron (NM_001291494, intron 9 of 28) 63818 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 164.5-20 chr14 66318390 66319031 + 0.5 NA Intergenic L1MA5|LINE|L1 -167661 NR_110307 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 183-45 chr6 168068471 168069135 + 0.5 NA intron (NR_110312, intron 3 of 15) intron (NR_110312, intron 3 of 15) 7032 NM_001122841 79981 Hs.266746 NM_024919 ENSG00000153303 FRMD1 bA164L23.1 FERM domain containing 1 protein-coding 175.5-3 chr1 70922526 70923080 + 0.5 NA intron (NR_028293, intron 2 of 4) PABL_A-int|LTR|ERV1 -123703 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 166-61 chr6 55029195 55029662 + 0.5 NA Intergenic L1PB1|LINE|L1 -77032 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 196.75-59 chrX 43251730 43252254 + 0.5 NA Intergenic MSTB-int|LTR|ERVL-MaLR 74998 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 306.75-4 chr14 82508984 82509930 + 0.5 NA Intergenic Intergenic -133175 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 183.5-13 chr12 40560090 40560603 + 0.5 NA intron (NM_173600, intron 162 of 173) L1MA10|LINE|L1 -132093 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 185-66 chr7 55920313 55920840 + 0.5 NA intron (NM_182633, intron 4 of 6) Tigger1|DNA|TcMar-Tigger -31301 NM_015969 51373 Hs.44298 NM_015969 ENSG00000239789 MRPS17 HSPC011|MRP-S17|RPMS17|S17mt mitochondrial ribosomal protein S17 protein-coding 224.75-41 chr7 80316280 80316999 + 0.5 NA Intergenic HAL1|LINE|L1 57800 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 256.25-18 chr8 132006435 132007215 + 0.5 NA intron (NR_136616, intron 23 of 23) L1ME2|LINE|L1 52557 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 171.5-92 chr7 33502093 33502566 + 0.5 NA intron (NM_001348037, intron 18 of 20) MER63B|DNA|hAT-Blackjack 372765 NM_001348040 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 151-93 chr7 113788874 113789401 + 0.5 NA Intergenic AluJr|SINE|Alu 129872 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 149.25-54 chr20 8830012 8830395 + 0.5 NA promoter-TSS (NR_004386) promoter-TSS (NR_004386) -982 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 148.75-101 chr8 120731528 120732013 + 0.5 NA intron (NM_021021, intron 1 of 6) MIR3|SINE|MIR -29483 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 162.25-35 chr2 174466178 174466550 + 0.5 NA intron (NM_001267051, intron 5 of 14) intron (NM_001267051, intron 5 of 14) 20665 NM_001267050 151556 Hs.516604 NM_152529 ENSG00000163328 GPR155 DEP.7|DEPDC3|PGR22 G protein-coupled receptor 155 protein-coding 193-13 chr11 115789072 115789584 + 0.5 NA Intergenic Intergenic -29128 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 215.75-5 chr11 31302300 31302734 + 0.5 NA intron (NM_181807, intron 6 of 8) intron (NM_181807, intron 6 of 8) 67222 NM_001367979 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 165.75-23 chr11 111076105 111076598 + 0.5 NA Intergenic Intergenic 20967 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 167.25-80 chr8 85471404 85472016 + 0.5 NA intron (NM_001293675, intron 2 of 5) intron (NM_001293675, intron 2 of 5) -6795 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 167.75-83 chr7 11772550 11772970 + 0.5 NA intron (NM_015204, intron 1 of 26) L1PA15|LINE|L1 59438 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 157.5-83 chr5 157285101 157285481 + 0.5 NA intron (NM_014376, intron 1 of 30) intron (NM_014376, intron 1 of 30) 15967 NM_014376 26999 Hs.519702 NM_014376 ENSG00000055163 CYFIP2 EIEE65|PIR121 cytoplasmic FMR1 interacting protein 2 protein-coding 155.75-35 chr14 65882809 65883221 + 0.5 NA Intergenic L1MA4|LINE|L1 411913 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 159.75-62 chr3 87058221 87058557 + 0.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR -30891 NR_104153 100846978 Hs.570649 NR_047469 ENSG00000281392 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 175.5-4 chr1 107172159 107172733 + 0.5 NA intron (NM_001113226, intron 1 of 6) MIR|SINE|MIR 24377 NM_001113226 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 158-75 chr5 140616455 140616960 + 0.5 NA Intergenic L1M3|LINE|L1 16468 NM_000591 929 Hs.163867 NM_000591 ENSG00000170458 CD14 - CD14 molecule protein-coding 157.5-68 chr4 84808930 84809330 + 0.5 NA intron (NM_014991, intron 14 of 67) intron (NM_014991, intron 14 of 67) -156486 NR_152774 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 334.5-2 chr14 46417650 46418568 + 0.5 NA intron (NR_102702, intron 3 of 3) L1MB1|LINE|L1 -53250 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 193.75-23 chr15 48501918 48502518 + 0.5 NA intron (NM_000138, intron 17 of 65) AluSz|SINE|Alu 143570 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 153.5-38 chr16 75913104 75913578 + 0.5 NA Intergenic Intergenic -186851 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 148.5-94 chr8 34769397 34769971 + 0.5 NA Intergenic Intergenic -14237 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 160-71 chr5 180719071 180719479 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 20783 NM_001001657 134083 Hs.554719 NM_001001657 ENSG00000174339 OR2Y1 OR5-2 olfactory receptor family 2 subfamily Y member 1 protein-coding 154.5-46 chr2 83173118 83173627 + 0.5 NA Intergenic Intergenic 316569 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 160.5-18 chr10 81255402 81255970 + 0.5 NA Intergenic MSTD|LTR|ERVL-MaLR 605889 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 154-40 chr17 61487735 61488150 + 0.5 NA Intergenic Intergenic 31454 NM_018488 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 200-29 chr21 22823244 22823700 + 0.5 NA Intergenic L1MA9|LINE|L1 -255812 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 158.75-32 chr15 83783040 83783561 + 0.5 NA intron (NM_207517, intron 4 of 29) L1MEg|LINE|L1 129177 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 179.5-16 chr13 33557857 33558357 + 0.5 NA intron (NM_001243476, intron 3 of 17) intron (NM_001243476, intron 3 of 17) 118687 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 163-22 chr11 113377963 113378355 + 0.5 NA Intergenic Intergenic -9620 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2|sgK288 ankyrin repeat and kinase domain containing 1 protein-coding 152-54 chr3 115335898 115336386 + 0.5 NA Intergenic Intergenic -188854 NM_001348800 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 155-66 chr3 193876238 193876649 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -32434 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 149.5-53 chr21 14307658 14308134 + 0.5 NA Intergenic L1MA9|LINE|L1 34097 NR_003088 150000 Hs.366575 NM_138726 ENSG00000243064 ABCC13 ABCC13P|C21orf73|PRED6 ATP binding cassette subfamily C member 13 (pseudogene) pseudo 176.75-52 chr3 63514554 63515084 + 0.5 NA intron (NM_001130003, intron 3 of 5) intron (NM_001130003, intron 3 of 5) 35232 NR_046677 100874016 Hs.441275 NR_046677 ENSG00000241359 SYNPR-AS1 - SYNPR antisense RNA 1 ncRNA 186.75-44 chr2 185913995 185914740 + 0.5 NA Intergenic Intergenic -114216 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 176-61 chr6 132629825 132630269 + 0.5 NA Intergenic Intergenic -5772 NM_001033080 9287 Hs.272382 NM_014626 ENSG00000146378 TAAR2 GPR58|taR-2 trace amine associated receptor 2 (gene/pseudogene) protein-coding 170.25-45 chr3 89471538 89472181 + 0.5 NA intron (NM_005233, intron 15 of 16) intron (NM_005233, intron 15 of 16) 364238 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 174.25-58 chr6 6223429 6224003 + 0.5 NA intron (NM_000129, intron 7 of 14) intron (NM_000129, intron 7 of 14) -54281 NR_107007 102466866 NR_107007 ENSG00000263572 MIR7853 hsa-mir-7853 microRNA 7853 ncRNA 157.5-22 chr12 86284603 86285206 + 0.5 NA intron (NM_001351286, intron 4 of 7) intron (NM_001351286, intron 4 of 7) -27605 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 190-50 chr5 39468678 39469255 + 0.5 NA Intergenic L1PA17|LINE|L1 -43733 NM_001244871 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 155.75-91 chr6 74161340 74161677 + 0.5 NA intron (NR_110856, intron 1 of 3) L1MEf|LINE|L1 92057 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 207.75-6 chr11 94529598 94530338 + 0.5 NA intron (NM_001190462, intron 3 of 3) intron (NM_001190462, intron 3 of 3) -13883 NM_002033 2526 Hs.390420 NM_002033 ENSG00000196371 FUT4 CD15|ELFT|FCT3A|FUC-TIV|FUTIV|LeX|SSEA-1 fucosyltransferase 4 protein-coding 190-5 chr10 11534187 11534834 + 0.5 NA intron (NM_014688, intron 2 of 14) intron (NM_014688, intron 2 of 14) -2230 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 193.25 chr1 30909527 30910092 + 0.5 NA Intergenic Intergenic -1051 NM_014654 9672 Hs.158287 NM_014654 ENSG00000162512 SDC3 SDCN|SYND3 syndecan 3 protein-coding 166.75-30 chr15 78891916 78892524 + 0.5 NA exon (NM_001265605, exon 8 of 12) exon (NM_001265605, exon 8 of 12) 19231 NM_001265605 10933 Hs.374503 NM_006791 ENSG00000185787 MORF4L1 Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6 mortality factor 4 like 1 protein-coding 150-56 chr3 31952252 31952612 + 0.5 NA intron (NM_001174060, intron 1 of 10) intron (NM_001174060, intron 1 of 10) -29318 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 152.5-75 chr3 175218571 175218984 + 0.5 NA intron (NM_207015, intron 2 of 13) intron (NM_207015, intron 2 of 13) 52319 NR_046713 100874244 Hs.581176 NR_046713 NAALADL2-AS2 - NAALADL2 antisense RNA 2 ncRNA 165.75-11 chr1 192520709 192521199 + 0.5 NA Intergenic Tigger4b|DNA|TcMar-Tigger -54819 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 168.25-57 chr5 40161236 40161641 + 0.5 NA Intergenic LTR16A|LTR|ERVL 109147 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 235.75-12 chr15 58900687 58901532 + 0.5 NA intron (NM_024755, intron 6 of 20) intron (NM_024755, intron 6 of 20) 32570 NR_135043 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 147.75-116 chr9 30317463 30318045 + 0.5 NA Intergenic Tigger3|DNA|TcMar-Tigger 90700 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 229.5-22 chr3 1653998 1654818 + 0.5 NA Intergenic L1P2|LINE|L1 -444395 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 166.5-65 chr5 105348668 105349092 + 0.5 NA Intergenic Intergenic 249406 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 148.25-22 chr12 58387381 58387965 + 0.5 NA Intergenic Intergenic -204029 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 156.5-61 chr22 34540971 34541530 + 0.5 NA Intergenic THE1C|LTR|ERVL-MaLR 456666 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 165.75-85 chr6 44071192 44071546 + 0.5 NA intron (NR_125864, intron 1 of 4) L1ME4b|LINE|L1 3283 NR_125864 101929705 Hs.670378 NR_125864 ENSG00000237686 LOC101929705 - uncharacterized LOC101929705 ncRNA 170-28 chr18 68068534 68069103 + 0.5 NA Intergenic Intergenic -253996 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 184.25-19 chr13 49735486 49735970 + 0.5 NA intron (NM_002267, intron 2 of 16) X7B_LINE|LINE|CR1 -44241 NR_103802 84650 Hs.433278 NM_032565 ENSG00000123179 EBPL EBRP EBP like protein-coding 147.75-76 chr4 45981297 45981860 + 0.5 NA Intergenic MIR|SINE|MIR 142476 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 185.75-85 chr8 86996371 86996932 + 0.5 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 130236 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 196.25-39 chr3 81324366 81324908 + 0.5 NA Intergenic Intergenic 330769 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 165.5-85 chr6 161800418 161800992 + 0.5 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 329728 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 199.75-18 chr14 52499336 52499822 + 0.5 NA intron (NM_001160047, intron 9 of 20) L1M3|LINE|L1 52926 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 170.75-49 chr4 127739564 127740120 + 0.5 NA intron (NM_001318467, intron 1 of 6) L1PA15-16|LINE|L1 9442 NM_001318467 83447 Hs.149030 NM_031291 ENSG00000151475 SLC25A31 AAC4|ANT 4|ANT4|SFEC35kDa solute carrier family 25 member 31 protein-coding 177.5-9 chr10 31981261 31981738 + 0.5 NA Intergenic AluJr|SINE|Alu -52623 NM_001270695 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 160.5-100 chr6 40906314 40906752 + 0.5 NA intron (NR_110873, intron 1 of 5) MER33|DNA|hAT-Charlie 116747 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 151.5-17 chr11 29836608 29837081 + 0.5 NA Intergenic Intergenic 145549 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 221-17 chr2 125150602 125151162 + 0.5 NA Intergenic L1M5|LINE|L1 967103 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 325.75-5 chr2 126749685 126750469 + 0.5 NA Intergenic MER20B|DNA|hAT-Charlie 93919 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 198-44 chr8 68730525 68730936 + 0.5 NA intron (NM_001349479, intron 9 of 11) intron (NM_001349479, intron 9 of 11) 373460 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 156-64 chr4 44430968 44431430 + 0.5 NA intron (NM_198353, intron 1 of 1) L1MC2|LINE|L1 17610 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 148.5-95 chr8 55735883 55736404 + 0.5 NA Intergenic Tigger3a|DNA|TcMar-Tigger 37235 NM_001286657 137695 Hs.420076 NM_152417 ENSG00000167904 TMEM68 - transmembrane protein 68 protein-coding 162.25-80 chr6 55449969 55450464 + 0.5 NA intron (NR_109869, intron 3 of 4) L2|LINE|L2 122747 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 162.25-22 chr14 87500830 87501256 + 0.5 NA Intergenic Intergenic 154251 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 196.5-66 chrX 81830369 81831077 + 0.5 NA Intergenic L1MD3|LINE|L1 628621 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 167.75-90 chr8 86722682 86723071 + 0.5 NA intron (NM_019098, intron 3 of 17) MLT2B4|LTR|ERVL 20799 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 182.25-57 chr7 113555090 113555613 + 0.5 NA Intergenic L1ME2z|LINE|L1 363658 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 145.75-31 chr14 43929667 43929976 + 0.5 NA Intergenic L1MC1|LINE|L1 577462 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 172.5-66 chr6 3263811 3264261 + 0.5 NA 3' UTR (NM_001135750, exon 2 of 2) 3' UTR (NM_001135750, exon 2 of 2) 5089 NM_001128592 389362 Hs.207069 NM_001128591 ENSG00000180822 PSMG4 C6orf86|PAC4|bA506K6.2 proteasome assembly chaperone 4 protein-coding 197.75-9 chr10 82452722 82453378 + 0.5 NA intron (NR_163253, intron 3 of 10) MIRc|SINE|MIR -220130 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 163-26 chr13 83292046 83292600 + 0.5 NA Intergenic Intergenic 590070 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 153.5-25 chr12 114473705 114474059 + 0.5 NA Intergenic L1MA3|LINE|L1 -65440 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 266.25-4 chr18 76782711 76783453 + 0.5 NA Intergenic Intergenic 39213 NR_040024 100131655 Hs.385806 NR_040024 ENSG00000264278 ZNF236-DT - ZNF236 divergent transcript ncRNA 289-2 chr11 42072784 42073680 + 0.5 NA intron (NR_135065, intron 1 of 9) MLT1E1A|LTR|ERVL-MaLR 12226 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 151.75-38 chr17 62925913 62926358 + 0.5 NA Intergenic Intergenic -18080 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 183.5-35 chr2 199649164 199649596 + 0.5 NA intron (NR_110270, intron 6 of 6) L1MA9|LINE|L1 41312 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 174.75-41 chr3 112613986 112614393 + 0.5 NA intron (NM_199512, intron 5 of 7) MamRep1151|LTR?|LTR? -12220 NR_109779 100506621 Hs.86538 NR_109779 LINC01279 - long intergenic non-protein coding RNA 1279 ncRNA 164.5-46 chr20 8518084 8518476 + 0.5 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) 269576 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 249.5-23 chr5 121601987 121602592 + 0.5 NA Intergenic L1PA7|LINE|L1 -249593 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 196.25-11 chr12 92777680 92778153 + 0.5 NA intron (NM_003566, intron 26 of 28) intron (NM_003566, intron 26 of 28) 41427 NM_001004330 440107 Hs.591013 NM_001004330 ENSG00000187510 PLEKHG7 - pleckstrin homology and RhoGEF domain containing G7 protein-coding 160.75-90 chr5 116614716 116615099 + 0.5 NA Intergenic Intergenic -40084 NM_001300780 57556 Hs.156967 NM_020681 ENSG00000092421 SEMA6A HT018|SEMA|SEMA6A1|SEMAQ|VIA semaphorin 6A protein-coding 147.5-20 chr12 84411524 84411932 + 0.5 NA Intergenic Intergenic 501071 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 240-23 chr4 117689607 117690523 + 0.5 NA TTS (NR_125757) TTS (NR_125757) -144336 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 200.75-25 chr2 78322349 78323046 + 0.5 NA Intergenic AluSc|SINE|Alu -31966 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 186-11 chr15 56995113 56995570 + 0.5 NA intron (NM_207038, intron 3 of 19) L1PA16|LINE|L1 75896 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 176.25-73 chr9 115664774 115665199 + 0.5 NA Intergenic Intergenic 79253 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 175-33 chr4 120425713 120426261 + 0.5 NA Intergenic L2b|LINE|L2 -359139 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 218.25-43 chr7 70079828 70080623 + 0.5 NA intron (NM_015570, intron 2 of 18) MER63C|DNA|hAT-Blackjack 481750 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 167.75-16 chr12 16909046 16909507 + 0.5 NA Intergenic L1MB7|LINE|L1 -79471 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 155.75-33 chr14 58110178 58110624 + 0.5 NA intron (NM_001001872, intron 4 of 7) L1MA8|LINE|L1 41812 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 146-47 chr2 229486942 229487399 + 0.5 NA intron (NM_139072, intron 6 of 12) intron (NM_139072, intron 6 of 12) -215883 NM_017933 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 181-8 chr11 25515268 25515702 + 0.5 NA Intergenic Intergenic -673638 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 176-72 chrX 33730287 33730713 + 0.5 NA Intergenic L1M3|LINE|L1 -391112 NM_000109 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 203-27 chr22 32353115 32353858 + 0.5 NA Intergenic Intergenic -1399 NM_006604 10738 Hs.558455 NM_006604 ENSG00000128276 RFPL3 RNF120 ret finger protein like 3 protein-coding 227.5-18 chr4 75731782 75732407 + 0.5 NA intron (NM_003715, intron 1 of 23) L1PA16|LINE|L1 7572 NM_003715 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 160.75-78 chr3 166790172 166790643 + 0.5 NA Intergenic Intergenic -108276 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 193-22 chr16 53548176 53548755 + 0.5 NA Intergenic Intergenic -45161 NM_001308325 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 164.25-10 chr1 212723639 212724287 + 0.5 NA Intergenic Intergenic -24123 NM_018664 55509 Hs.62919 NM_018664 ENSG00000123685 BATF3 JDP1|JUNDM1|SNFT basic leucine zipper ATF-like transcription factor 3 protein-coding 160.25-86 chrX 68613362 68613828 + 0.5 NA Intergenic MIR|SINE|MIR -34074 NM_001142503 9754 Hs.95140 NM_014725 ENSG00000130052 STARD8 ARHGAP38|DLC3|STARTGAP3 StAR related lipid transfer domain containing 8 protein-coding 217-19 chr3 118135398 118135955 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -444751 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 212.5-10 chr12 116983076 116983785 + 0.5 NA intron (NR_103809, intron 2 of 3) intron (NR_103809, intron 2 of 3) 3907 NR_103809 100506551 Hs.657861 NR_103809 ENSG00000257279 LOC100506551 - uncharacterized LOC100506551 ncRNA 189.75-22 chr12 26947257 26947884 + 0.5 NA intron (NM_015633, intron 1 of 6) AluJb|SINE|Alu 9100 NM_001171887 26127 Hs.591162 NM_015633 ENSG00000111790 FGFR1OP2 HSPC123-like|WIT3.0 FGFR1 oncogene partner 2 protein-coding 195.75-69 chr8 135548846 135549371 + 0.5 NA intron (NM_006558, intron 4 of 8) MIRc|SINE|MIR 91652 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 163.25-5 chr1 101385420 101385893 + 0.5 NA Intergenic Intergenic 61819 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 153-9 chr10 65213730 65214234 + 0.5 NA Intergenic Intergenic -289464 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 200.5-62 chr9 5598610 5599314 + 0.5 NA Intergenic L1ME4b|LINE|L1 -30145 NM_001135920 57589 Hs.211520 NM_020829 ENSG00000107036 RIC1 CIP150|KIAA1432|bA207C16.1 RIC1 homolog, RAB6A GEF complex partner 1 protein-coding 212-29 chr5 29560811 29561571 + 0.5 NA Intergenic Intergenic -165215 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 210-7 chr12 119454523 119455219 + 0.5 NA intron (NM_178499, intron 2 of 13) MLT1J|LTR|ERVL-MaLR 120142 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 158.25-93 chr5 144137732 144138181 + 0.5 NA Intergenic Intergenic 32703 NM_030799 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 147.25-95 chr8 14424774 14425295 + 0.5 NA intron (NM_001322881, intron 2 of 6) intron (NM_001322881, intron 2 of 6) 428476 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 194.5-3 chr1 175621519 175622148 + 0.5 NA intron (NM_003285, intron 1 of 22) L2c|LINE|L2 121762 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 167.5-27 chr15 46903148 46903630 + 0.5 NA Intergenic Intergenic -280700 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 180-17 chr13 67218386 67218904 + 0.5 NA 3' UTR (NM_001318374, exon 2 of 2) 3' UTR (NM_001318374, exon 2 of 2) 11691 NM_001318372 5101 Hs.654709 NM_020403 ENSG00000184226 PCDH9 - protocadherin 9 protein-coding 170.25-22 chr15 82067416 82067991 + 0.5 NA Intergenic Intergenic -20891 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 183.75-6 chr1 150839467 150840057 + 0.5 NA intron (NM_001197325, intron 4 of 20) intron (NM_001197325, intron 4 of 20) -31502 NM_000396 1513 Hs.632466 NM_000396 ENSG00000143387 CTSK CTS02|CTSO|CTSO1|CTSO2|PKND|PYCD cathepsin K protein-coding 218.5-4 chr1 110914774 110915440 + 0.5 NA Intergenic L1ME3B|LINE|L1 41959 NM_000560 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 148.25-43 chr2 46754976 46755509 + 0.5 NA intron (NM_144949, intron 1 of 1) intron (NM_144949, intron 1 of 1) 55947 NM_144949 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 149.5-87 chr7 77523478 77523918 + 0.5 NA Intergenic L1M3|LINE|L1 -13597 NM_002835 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase non-receptor type 12 protein-coding 153.75-71 chr6 40714524 40714936 + 0.5 NA Intergenic Intergenic -127366 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 147.5-71 chr4 89483175 89483757 + 0.5 NA Intergenic MER1B|DNA|hAT-Charlie -175666 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 171.75-37 chr18 2207103 2207742 + 0.5 NA Intergenic MER53|DNA|hAT 364083 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 175.75-20 chr15 95961028 95961438 + 0.5 NA Intergenic Intergenic 166608 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 176.25-54 chr6 64159148 64159830 + 0.5 NA intron (NM_001292009, intron 31 of 43) AluY|SINE|Alu 352653 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 164-39 chr2 224294482 224294992 + 0.5 NA Intergenic Intergenic 107257 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 146.5-97 chr6 151263914 151264306 + 0.5 NA intron (NM_005100, intron 2 of 4) intron (NM_005100, intron 2 of 4) 24143 NM_005100 9590 Hs.371240 NM_005100 ENSG00000131016 AKAP12 AKAP250|SSeCKS A-kinase anchoring protein 12 protein-coding 173-65 chr6 27263402 27263786 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 15893 NM_005865 10279 Hs.274407 NM_005865 ENSG00000112812 PRSS16 TSSP serine protease 16 protein-coding 151.5-5 chr1 114771924 114772415 + 0.5 NA non-coding (NR_049742, exon 4 of 4) non-coding (NR_049742, exon 4 of 4) 8516 NR_049741 80143 Hs.709277 NM_025073 ENSG00000052723 SIKE1 SIKE suppressor of IKBKE 1 protein-coding 173.5-18 chr12 82505712 82506272 + 0.5 NA Intergenic Intergenic -147187 NR_033192 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 160-6 chr10 5917176 5917809 + 0.5 NA exon (NM_001258452, exon 11 of 22) exon (NM_001258452, exon 11 of 22) 23106 NM_032807 84893 Hs.498543 NM_032807 ENSG00000134452 FBH1 FBXO18|Fbx18|hFBH1 F-box DNA helicase 1 protein-coding 207-29 chr4 11105516 11106291 + 0.5 NA Intergenic Intergenic -262924 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 199.25-72 chrX 25431985 25432502 + 0.5 NA Intergenic Intergenic -416278 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 172.25-56 chr4 118834364 118834974 + 0.5 NA intron (NM_014822, intron 1 of 22) MIRb|SINE|MIR 1457 NM_001318066 9871 Hs.189641 NM_014822 ENSG00000150961 SEC24D CLCRP2 SEC24 homolog D, COPII coat complex component protein-coding 180.5-48 chr3 115097980 115098492 + 0.5 NA intron (NM_001348800, intron 1 of 11) intron (NM_001348800, intron 1 of 11) 2072 NM_001348805 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 223.5-8 chr11 16437736 16438478 + 0.5 NA intron (NM_001367872, intron 3 of 16) intron (NM_001367872, intron 3 of 16) -29251 NM_001145811 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 204.5-2 chr1 50992666 50993223 + 0.5 NA Intergenic MER103C|DNA|hAT-Charlie 22699 NM_078626 1031 Hs.525324 NM_001262 ENSG00000123080 CDKN2C INK4C|p18|p18-INK4C cyclin dependent kinase inhibitor 2C protein-coding 205-24 chr2 77048394 77048882 + 0.5 NA intron (NR_146416, intron 1 of 1) L1MA5|LINE|L1 62673 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 179.25-24 chr12 85989623 85990178 + 0.5 NA intron (NM_001351286, intron 5 of 7) intron (NM_001351286, intron 5 of 7) 115605 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 174.75-38 chr22 28176052 28176556 + 0.5 NA intron (NM_001145418, intron 5 of 22) L1MA6|LINE|L1 -255692 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 196.5-38 chr4 120427493 120428164 + 0.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -360980 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 180.5-60 chr5 86583010 86583695 + 0.5 NA Intergenic L1ME2z|LINE|L1 -34589 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 168.75-68 chr3 67267106 67267642 + 0.5 NA Intergenic Intergenic 41910 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 180.5-72 chr8 140996539 140997240 + 0.5 NA intron (NM_001352737, intron 1 of 32) Tigger1|DNA|TcMar-Tigger 4115 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 175-30 chr3 74624064 74624713 + 0.5 NA Intergenic MER45B|DNA|hAT-Tip100 -103248 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 198.5-20 chr14 86670803 86671407 + 0.5 NA Intergenic L1MA2|LINE|L1 -234673 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 149-85 chr5 153037830 153038311 + 0.5 NA Intergenic L3|LINE|CR1 -65721 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 200-22 chr18 13828523 13828979 + 0.5 NA Intergenic Intergenic 4602 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 163.5-83 chr4 59545399 59545962 + 0.5 NA Intergenic AluSq|SINE|Alu 532107 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 190.75-13 chr11 24006070 24006467 + 0.5 NA Intergenic Intergenic -490785 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 220.75-10 chr14 83634481 83635011 + 0.5 NA Intergenic Tigger2|DNA|TcMar-Tigger 992114 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 155.75-90 chr6 74108536 74108935 + 0.5 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 39284 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 160.5-72 chr4 84596368 84596874 + 0.5 NA intron (NM_001263, intron 1 of 12) MLT1D|LTR|ERVL-MaLR 13494 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 244.5-22 chr3 185688638 185689400 + 0.5 NA intron (NR_138486, intron 6 of 15) intron (NR_138486, intron 6 of 15) -24233 NR_126326 646600 Hs.647949 NR_027317 ENSG00000163915 IGF2BP2-AS1 C3orf65 IGF2BP2 antisense RNA 1 ncRNA 182-58 chr8 77040677 77041300 + 0.5 NA Intergenic MER63B|DNA|hAT-Blackjack -39944 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 154.25-22 chr11 110978925 110979347 + 0.5 NA Intergenic L1MEd|LINE|L1 118182 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 213.25-9 chr12 59705818 59706302 + 0.5 NA intron (NM_001270623, intron 3 of 5) MIR|SINE|MIR 16690 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 183.25-12 chr11 76438236 76438614 + 0.5 NA Intergenic AluSq2|SINE|Alu -6593 NM_001300943 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 172-2 chr1 51484469 51484960 + 0.5 NA intron (NM_001981, intron 1 of 24) BLACKJACK|DNA|hAT-Blackjack 34552 NM_001981 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 153.75-41 chr22 19362352 19362795 + 0.5 NA intron (NM_003325, intron 15 of 24) AluSq2|SINE|Alu 69160 NM_003325 7290 Hs.474206 NM_003325 ENSG00000100084 HIRA DGCR1|TUP1|TUPLE1 histone cell cycle regulator protein-coding 152-43 chr2 180105927 180106501 + 0.5 NA Intergenic HAL1|LINE|L1 -98917 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 159.75-53 chr20 47601917 47602515 + 0.5 NA intron (NM_181659, intron 2 of 22) intron (NM_181659, intron 2 of 22) 100329 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 210.75-43 chr9 99493817 99494396 + 0.5 NA Intergenic AluSg|SINE|Alu -118849 NR_102270 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 161.5-9 chr1 194219677 194220147 + 0.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 915167 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 152.75-49 chr2 83261894 83262381 + 0.5 NA Intergenic Intergenic -260677 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 204-34 chr4 71311187 71311975 + 0.5 NA intron (NM_001098484, intron 3 of 25) L1PA8|LINE|L1 -27472 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 161.75-51 chr3 114909249 114909836 + 0.5 NA intron (NM_001348805, intron 3 of 10) Tigger3|DNA|TcMar-Tigger -8917 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 168.5-31 chr15 56484343 56484952 + 0.5 NA Intergenic LTR16A|LTR|ERVL -19510 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 157.5-55 chr20 51259111 51259607 + 0.5 NA Intergenic LTR8|LTR|ERV1 193618 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 192.5-40 chr3 174961633 174962334 + 0.5 NA intron (NM_207015, intron 1 of 13) MLT1F|LTR|ERVL-MaLR 102649 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 157.25-16 chr12 1211958 1212491 + 0.5 NA intron (NR_027948, intron 12 of 19) L2c|LINE|L2 184476 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 164.25-30 chr14 83002105 83002670 + 0.5 NA Intergenic Intergenic 359755 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 172.25-46 chr4 28513315 28513745 + 0.5 NA Intergenic Intergenic -306052 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 197.75-50 chr5 27602901 27603445 + 0.5 NA Intergenic L1ME2|LINE|L1 130881 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 276.5-15 chr8 85145101 85145770 + 0.5 NA exon (NM_001349638, exon 17 of 17) exon (NM_001349638, exon 17 of 17) 31606 NR_134311 102723322 Hs.535913 NR_134311 ENSG00000260493 LOC102723322 - uncharacterized LOC102723322 ncRNA 194.5-55 chr7 88272843 88273394 + 0.5 NA 3' UTR (NM_001205315, exon 6 of 6) 3' UTR (NM_001205315, exon 6 of 6) 33776 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 176-11 chr12 11980539 11980965 + 0.5 NA Intergenic Intergenic -69109 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 160.25-72 chr7 39084525 39084965 + 0.5 NA intron (NM_007252, intron 2 of 10) intron (NM_007252, intron 2 of 10) -71178 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 183.5-16 chr14 47077456 47077984 + 0.5 NA intron (NM_001113498, intron 6 of 16) L4_A_Mam|LINE|RTE-X 265526 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 187.25-68 chr8 81262458 81263129 + 0.5 NA Intergenic Intergenic -17743 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 156.5-8 chr1 108610523 108610913 + 0.5 NA intron (NM_001010883, intron 3 of 10) AluY|SINE|Alu 50375 NM_001102592 113802 Hs.7962 NM_144584 ENSG00000162639 HENMT1 C1orf59|HEN1 HEN methyltransferase 1 protein-coding 171.5-70 chr4 22059135 22059523 + 0.5 NA Intergenic LTR78|LTR|ERV1 -110578 NM_147182 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 192.25-17 chr13 39186023 39186777 + 0.5 NA Intergenic MER58D|DNA|hAT-Charlie 147944 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 169-13 chr11 124008225 124008620 + 0.5 NA Intergenic Intergenic -7153 NM_001004462 390264 Hs.553760 NM_001004462 ENSG00000254737 OR10G4 OR11-278 olfactory receptor family 10 subfamily G member 4 protein-coding 155-84 chr5 171689255 171689737 + 0.5 NA Intergenic Intergenic -96376 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 156.5-40 chr16 86451530 86451950 + 0.5 NA Intergenic (GATATA)n|Simple_repeat|Simple_repeat 57120 NR_033925 400550 Hs.448825 NR_033925 ENSG00000268388 FENDRR FOXF1-AS1|FOXF1AS1|TCONS_00024240|lincFOXF1|onco-lncRNA-21 FOXF1 adjacent non-coding developmental regulatory RNA ncRNA 209.5-44 chr6 62717860 62718645 + 0.5 NA Intergenic Intergenic -432025 NM_001350622 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 156.5-25 chr10 112452671 112453230 + 0.5 NA intron (NM_001365712, intron 1 of 8) L1MC3|LINE|L1 -5347 NM_001351082 64429 Hs.196990 NM_022494 ENSG00000023041 ZDHHC6 DHHC-6|ZNF376 zinc finger DHHC-type containing 6 protein-coding 160.5-19 chr11 31864831 31865221 + 0.5 NA intron (NR_033971, intron 1 of 2) AluJr|SINE|Alu 38459 NR_117094 103157000 NR_117094 ENSG00000281880 PAUPAR - PAX6 upstream antisense RNA ncRNA 145.75-14 chr10 105007897 105008463 + 0.5 NA intron (NM_014978, intron 4 of 26) L2c|LINE|L2 -341964 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 156.25-89 chr7 110826785 110827401 + 0.5 NA intron (NM_001350963, intron 5 of 5) Charlie1a|DNA|hAT-Charlie -263913 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 203-9 chr10 112180125 112180766 + 0.5 NA intron (NM_001244949, intron 4 of 21) intron (NM_001244949, intron 4 of 21) 3320 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 156-33 chr17 70570964 70571538 + 0.5 NA Intergenic Intergenic 401716 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 177-12 chr11 109549500 109550120 + 0.5 NA Intergenic Intergenic 127620 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 147.25-93 chr7 83209241 83209694 + 0.5 NA Intergenic Intergenic -46583 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 217.25-10 chr10 100447643 100448343 + 0.5 NA Intergenic Intergenic -15016 NM_003393 7479 Hs.421281 NM_003393 ENSG00000075290 WNT8B - Wnt family member 8B protein-coding 190.5-16 chr14 54477716 54478317 + 0.5 NA 3' UTR (NM_004124, exon 7 of 7) 3' UTR (NM_004124, exon 7 of 7) 10964 NM_004124 2764 Hs.151413 NM_004124 ENSG00000197045 GMFB GMF glia maturation factor beta protein-coding 205.5-38 chr5 96720902 96721444 + 0.5 NA intron (NM_001042446, intron 1 of 26) intron (NM_001042446, intron 1 of 26) 18513 NM_001330630 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 171-34 chr2 164154772 164155440 + 0.5 NA Intergenic Intergenic 413389 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 181.75-42 chr3 73326273 73326719 + 0.5 NA Intergenic Intergenic 107499 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 195.25-48 chr6 27257909 27258566 + 0.5 NA Intergenic L1M4a2|LINE|L1 10536 NM_005865 10279 Hs.274407 NM_005865 ENSG00000112812 PRSS16 TSSP serine protease 16 protein-coding 178-55 chr5 104081816 104082454 + 0.5 NA Intergenic Intergenic -519346 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 191.25-23 chr14 51181765 51182381 + 0.5 NA Intergenic Intergenic -58174 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 183.25-49 chr4 42504649 42505018 + 0.5 NA intron (NM_001105529, intron 22 of 35) L2a|LINE|L2 107345 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 152.25-98 chr8 106525224 106525618 + 0.5 NA intron (NM_018002, intron 3 of 15) MIRb|SINE|MIR 77497 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 153.75-33 chr2 114402251 114402662 + 0.5 NA Intergenic Intergenic -40185 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 149.75-2 chr1 45252492 45252910 + 0.5 NA Intergenic Intergenic -46096 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 232.75-7 chr14 38409602 38410353 + 0.5 NA Intergenic Intergenic -153884 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 164-59 chr4 157082025 157082645 + 0.5 NA intron (NM_000824, intron 2 of 9) L2b|LINE|L2 5932 NM_001166060 2743 Hs.32973 NM_000824 ENSG00000109738 GLRB HKPX2 glycine receptor beta protein-coding 163-34 chr15 65693276 65693905 + 0.5 NA intron (NM_005848, intron 21 of 31) L2c|LINE|L2 3346 NR_145750 109617020 NR_145750 ENSG00000238311 SNORD13E - small nucleolar RNA, C/D box 13E snoRNA 165-76 chr6 66438377 66438906 + 0.5 NA Intergenic Intergenic 650762 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 150.5-64 chr2 135523215 135523761 + 0.5 NA intron (NM_032143, intron 1 of 20) intron (NM_032143, intron 1 of 20) 7097 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 184.75-11 chr10 44280367 44280864 + 0.5 NA Intergenic Intergenic -12135 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 164-63 chr5 57116191 57116535 + 0.5 NA Intergenic Intergenic -57585 NM_001331037 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 223.75-4 chr10 88268644 88269371 + 0.5 NA Intergenic Intergenic 314311 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 188.75-5 chr1 215008642 215009145 + 0.5 NA intron (NM_001017424, intron 1 of 6) intron (NM_001017424, intron 1 of 6) 3351 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 346.5-3 chr16 17616986 17618022 + 0.5 NA Intergenic Intergenic -146544 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 166-80 chr8 120619817 120620339 + 0.5 NA intron (NM_021021, intron 3 of 6) intron (NM_021021, intron 3 of 6) -141175 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 268.25-10 chr17 76922807 76923789 + 0.5 NA intron (NM_144677, intron 8 of 16) intron (NM_144677, intron 8 of 16) 45901 NR_136417 105371899 Hs.634683 NR_136416 ENSG00000267568 LOC105371899 - uncharacterized LOC105371899 ncRNA 173-18 chr11 76372154 76372694 + 0.5 NA intron (NM_004705, intron 1 of 4) intron (NM_004705, intron 1 of 4) 8541 NR_130898 5612 Hs.503315 NM_004705 ENSG00000137492 THAP12 DAP4|P52rIPK|PRKRIR|THAP0 THAP domain containing 12 protein-coding 187.25-64 chr8 40172280 40172819 + 0.5 NA Intergenic Intergenic 19067 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 172.75-54 chr5 75668250 75668764 + 0.5 NA intron (NM_001276713, intron 12 of 13) intron (NM_001276713, intron 12 of 13) 43948 NM_152408 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 177-17 chr13 25335255 25335744 + 0.5 NA intron (NM_014089, intron 13 of 15) intron (NM_014089, intron 13 of 15) 33874 NM_001008564 9818 Hs.507537 NM_014089 ENSG00000139496 NUP58 NUP45|NUPL1|PRO2463 nucleoporin 58 protein-coding 181-9 chr11 79889463 79890145 + 0.5 NA Intergenic Intergenic -448774 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 149.5-97 chr8 111526132 111526507 + 0.5 NA Intergenic L1MA8|LINE|L1 149680 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 174-30 chr2 131017017 131017435 + 0.5 NA intron (NM_001367493, intron 4 of 13) intron (NM_001367493, intron 4 of 13) 75936 NM_001321748 130074 Hs.534679 NM_001009993 ENSG00000152102 FAM168B MANI family with sequence similarity 168 member B protein-coding 147.5-60 chr3 64155798 64156224 + 0.5 NA intron (NM_001370528, intron 5 of 7) L1MB7|LINE|L1 -31533 NR_046702 100874243 Hs.670840 NR_046702 ENSG00000226017 PRICKLE2-AS3 - PRICKLE2 antisense RNA 3 ncRNA 218.5-38 chr7 7249919 7250629 + 0.5 NA Intergenic Intergenic -4880 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 199 chr1 90522000 90522739 + 0.5 NA Intergenic L1MA4A|LINE|L1 -135381 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 221.5-3 chr1 107310243 107311114 + 0.5 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 162609 NM_001113226 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 157.5-15 chr12 15083058 15083501 + 0.5 NA Intergenic Intergenic -68644 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 229.75-29 chr5 86218436 86219350 + 0.5 NA Intergenic Intergenic -63551 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 146.25-99 chr8 113806055 113806413 + 0.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR -369295 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 165.75-112 chr8 125835181 125835536 + 0.5 NA Intergenic L1ME3A|LINE|L1 115839 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 185.75-14 chr12 28430682 28431116 + 0.5 NA intron (NM_001352082, intron 9 of 13) LTR79|LTR|ERVL -240161 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 191-11 chr11 62147876 62148366 + 0.5 NA intron (NM_001040694, intron 15 of 18) intron (NM_001040694, intron 15 of 18) 24110 NM_020238 3619 Hs.142179 NM_020238 ENSG00000149503 INCENP - inner centromere protein protein-coding 205-37 chr4 52123244 52123740 + 0.5 NA Intergenic AluSz|SINE|Alu 72188 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 246.25-10 chr11 43816406 43817204 + 0.5 NA intron (NM_016142, intron 6 of 10) L1PB1|LINE|L1 -64026 NM_139178 221120 Hs.720708 NM_139178 ENSG00000166199 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1|hABH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding 200.75-23 chr17 72106311 72106962 + 0.5 NA intron (NR_103738, intron 2 of 6) intron (NR_103738, intron 2 of 6) 9380 NR_103738 400618 Hs.657374 NR_103737 ENSG00000234899 SOX9-AS1 - SOX9 antisense RNA 1 ncRNA 207.75-24 chr20 46873202 46873802 + 0.5 NA Intergenic Charlie7|DNA|hAT-Charlie -21122 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 146.25-42 chr2 46776171 46776687 + 0.5 NA Intergenic Charlie1|DNA|hAT-Charlie -40239 NR_034099 388948 Hs.728895 NR_034099 ENSG00000222005 LINC01118 - long intergenic non-protein coding RNA 1118 ncRNA 155.5-22 chr12 43019505 43019967 + 0.5 NA Intergenic MER5B|DNA|hAT-Charlie -135579 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 154.75-96 chr8 14176048 14176534 + 0.5 NA intron (NM_139167, intron 4 of 7) L1MEd|LINE|L1 546601 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 203-39 chr5 146080029 146080505 + 0.5 NA Intergenic Intergenic 25310 NM_001029869 153770 Hs.162369 NM_001029869 ENSG00000173261 PLAC8L1 - PLAC8 like 1 protein-coding 179.5-63 chr5 105340257 105340953 + 0.5 NA Intergenic L1M4c|LINE|L1 241131 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 151-51 chr21 16177268 16177669 + 0.5 NA intron (NR_111005, intron 1 of 6) intron (NR_111005, intron 1 of 6) -3930 NR_136551 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 180-64 chr7 123848007 123848649 + 0.5 NA intron (NM_012269, intron 2 of 4) intron (NM_012269, intron 2 of 4) 3159 NM_012269 23553 Hs.28673 NM_012269 ENSG00000106302 HYAL4 CSHY|HYAL-4 hyaluronidase 4 protein-coding 205.5-8 chr11 54757299 54758082 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 50858 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 161.25-60 chr5 153311995 153312498 + 0.5 NA Intergenic L1ME3B|LINE|L1 -178278 NM_001258019 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 174-56 chr5 175261066 175261447 + 0.5 NA Intergenic MER5A1|DNA|hAT-Charlie 182926 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 204.5-9 chr10 108215669 108216375 + 0.5 NA Intergenic Intergenic -146729 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 205.25-41 chr9 99791563 99792333 + 0.5 NA intron (NR_109802, intron 2 of 6) L1ME2|LINE|L1 27941 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 182.25-7 chr11 100109264 100109834 + 0.5 NA intron (NM_001243270, intron 12 of 23) intron (NM_001243270, intron 12 of 23) 553404 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 230-18 chr20 22712665 22713257 + 0.5 NA Intergenic L1PA10|LINE|L1 -27617 NR_146528 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 185.75-52 chr3 99900589 99901247 + 0.5 NA intron (NM_001042459, intron 4 of 4) intron (NM_001042459, intron 4 of 4) -24715 NM_001282794 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 197-3 chr11 63015358 63016066 + 0.5 NA intron (NM_004254, intron 1 of 10) intron (NM_004254, intron 1 of 10) 129 NM_004254 9376 Hs.266223 NM_004254 ENSG00000149452 SLC22A8 OAT3 solute carrier family 22 member 8 protein-coding 170.25-69 chr7 27967944 27968454 + 0.5 NA intron (NM_175061, intron 2 of 4) intron (NM_175061, intron 2 of 4) -212258 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 204-26 chr2 211692165 211692790 + 0.5 NA intron (NM_001042599, intron 12 of 26) MLT1D|LTR|ERVL-MaLR 733883 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 213.25-34 chr4 115960885 115961411 + 0.5 NA Intergenic tRNA-Cys-TGY|tRNA|tRNA -338577 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 167-86 chr8 79630216 79630853 + 0.5 NA intron (NM_007029, intron 1 of 4) intron (NM_007029, intron 1 of 4) 19417 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 156.25-91 chr8 5499306 5499779 + 0.5 NA Intergenic L1PA10|LINE|L1 -504628 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 161-41 chr18 70847071 70847668 + 0.5 NA Intergenic Intergenic -196415 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 149.75-80 chr6 48570605 48571152 + 0.5 NA Intergenic Intergenic -502189 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 156.5-93 chr6 41207162 41207622 + 0.5 NA Intergenic Intergenic -6243 NM_024807 79865 Hs.164797 NM_024807 ENSG00000112195 TREML2 C6orf76|TLT-2|TLT2|dJ238O23.1 triggering receptor expressed on myeloid cells like 2 protein-coding 162.25-97 chr8 86239119 86239595 + 0.5 NA Intergenic L1MC2|LINE|L1 -8976 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 158-73 chr5 122555078 122555654 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 29234 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 185.25-31 chr17 63257741 63258260 + 0.5 NA intron (NM_025185, intron 7 of 25) L1MA4A|LINE|L1 182267 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 209-21 chr2 57955282 57956048 + 0.5 NA intron (NM_001288838, intron 1 of 15) L1PA10|LINE|L1 48014 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 155.25-81 chr7 32249189 32249692 + 0.5 NA intron (NM_001322059, intron 1 of 17) intron (NM_001322059, intron 1 of 17) 49888 NM_001191058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 154.75-90 chr6 136210649 136211232 + 0.5 NA Intergenic AluSx|SINE|Alu 39371 NM_001099286 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 150.75-34 chr19 17345708 17346125 + 0.5 NA Intergenic AluJr4|SINE|Alu 8363 NM_032620 84705 Hs.334885 NM_032620 ENSG00000130299 GTPBP3 COXPD23|GTPBG3|MSS1|MTGP1|THDF1 GTP binding protein 3, mitochondrial protein-coding 190.75-36 chr2 221782212 221782721 + 0.5 NA Intergenic Intergenic -208264 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 193.25-19 chr14 43361955 43362464 + 0.5 NA Intergenic L2|LINE|L2 1145074 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 166.75-19 chr12 50842796 50843286 + 0.5 NA exon (NM_182559, exon 1 of 5) exon (NM_182559, exon 1 of 5) 115 NM_182559 283471 Hs.125571 NM_182559 ENSG00000186452 TMPRSS12 CT151 transmembrane serine protease 12 protein-coding 242.25-24 chr9 82692888 82693651 + 0.5 NA Intergenic L1MA4A|LINE|L1 369873 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 145.75-52 chr2 61770030 61770556 + 0.5 NA Intergenic Intergenic 83767 NM_032180 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 158.25-100 chr7 8962414 8963023 + 0.5 NA Intergenic MIR|SINE|MIR 529109 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 182.25-41 chr5 34525229 34525667 + 0.5 NA Intergenic L1ME4a|LINE|L1 -130880 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 149.75-15 chr11 25154485 25154998 + 0.5 NA Intergenic L1PA10|LINE|L1 657688 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 268 chr1 81043963 81044594 + 0.5 NA Intergenic Intergenic -261914 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 164.25-36 chr16 72468840 72469243 + 0.5 NA intron (NR_159371, intron 3 of 5) intron (NR_159371, intron 3 of 5) 195929 NR_159370 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 156.75-69 chr4 137325564 137325991 + 0.5 NA Intergenic Intergenic -112978 NR_149105 105377441 Hs.668386 NR_149105 LINC02511 - long intergenic non-protein coding RNA 2511 ncRNA 156.75-83 chr6 40677656 40678109 + 0.5 NA Intergenic L2|LINE|L2 -90518 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 190-29 chr2 143054767 143055305 + 0.5 NA 3' UTR (NM_003937, exon 14 of 14) 3' UTR (NM_003937, exon 14 of 14) -74383 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 147-111 chr8 81000891 81001340 + 0.5 NA intron (NM_018440, intron 3 of 8) L2b|LINE|L2 110953 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 148.25-49 chr2 125530169 125530582 + 0.5 NA Intergenic Intergenic 587610 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 183.5-37 chr20 50242563 50243273 + 0.5 NA Intergenic Intergenic -24568 NM_001278655 100506115 Hs.235484 NM_001278655 SMIM25 GCRL1|LINC01272 small integral membrane protein 25 protein-coding 161-27 chr14 20304012 20304515 + 0.5 NA intron (NM_138376, intron 1 of 9) intron (NM_138376, intron 1 of 9) 1688 NM_138376 91875 Hs.98553 NM_138376 ENSG00000136319 TTC5 Strap tetratricopeptide repeat domain 5 protein-coding 215.25-6 chr10 19386010 19386691 + 0.5 NA intron (NM_001142308, intron 26 of 39) intron (NM_001142308, intron 26 of 39) 337549 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 157-53 chr2 182203199 182203603 + 0.5 NA intron (NM_005019, intron 8 of 14) intron (NM_005019, intron 8 of 14) 38662 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 205-10 chr11 98567345 98568157 + 0.5 NA Intergenic Intergenic -453198 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 210-6 chr11 82114411 82114892 + 0.5 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) -223815 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 174.25-7 chr10 32873630 32874184 + 0.5 NA intron (NM_001321115, intron 42 of 43) L1MB8|LINE|L1 27565 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 258-4 chr1 188227290 188228056 + 0.5 NA Intergenic L1MA3|LINE|L1 784045 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 163.25-2 chr1 17299775 17300355 + 0.5 NA Intergenic AluSx|SINE|Alu -8132 NM_012387 23569 Hs.522969 NM_012387 ENSG00000159339 PADI4 PAD|PAD4|PADI5|PDI4|PDI5 peptidyl arginine deiminase 4 protein-coding 146.5-47 chr2 36139976 36140444 + 0.5 NA Intergenic MIR|SINE|MIR 215360 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 157 chr1 39983521 39984078 + 0.5 NA Intergenic AluSq2|SINE|Alu 28654 NM_001349823 84879 Hs.655177 NM_032793 ENSG00000168389 MFSD2A MCPH15|MFSD2|NLS1 major facilitator superfamily domain containing 2A protein-coding 198.75-25 chr15 92241941 92242516 + 0.5 NA Intergenic Intergenic -151653 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 150.25-51 chr2 122396661 122397203 + 0.5 NA Intergenic Intergenic 641281 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 211.5-43 chr7 11833825 11834337 + 0.5 NA Intergenic Intergenic -1883 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 163.5-12 chr10 22589382 22589817 + 0.5 NA intron (NM_005028, intron 4 of 9) intron (NM_005028, intron 4 of 9) 124509 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 161.75-7 chr10 92729137 92729586 + 0.5 NA Intergenic AluSx1|SINE|Alu 39406 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 151-39 chr2 45197071 45197389 + 0.5 NA intron (NR_033831, intron 1 of 5) L1MEf|LINE|L1 57711 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 158.75-49 chr3 72503431 72503887 + 0.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -57036 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 166.75-38 chr2 34253689 34254247 + 0.5 NA intron (NR_126403, intron 4 of 5) (TA)n|Simple_repeat|Simple_repeat 186742 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 148.25-92 chr8 77049826 77050265 + 0.5 NA Intergenic Intergenic -49001 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 159.5-43 chr2 118777286 118777768 + 0.5 NA Intergenic AluSx|SINE|Alu 70656 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 168-2 chr1 64793640 64794147 + 0.5 NA intron (NM_001366165, intron 5 of 11) L1ME1|LINE|L1 48818 NM_018211 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 150.5-101 chr6 38543322 38543768 + 0.5 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) 52522 NM_152733 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 205.25-5 chr1 209188456 209189216 + 0.5 NA Intergenic Intergenic -136620 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 186.25-60 chr7 83262607 83263288 + 0.5 NA Intergenic Intergenic -100063 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 155-3 chr1 54292156 54292625 + 0.5 NA intron (NM_001009955, intron 4 of 16) MIR3|SINE|MIR 55947 NR_103541 619518 Hs.591438 NM_001034847 ENSG00000198711 SSBP3-AS1 C1orf191|MST128|MSTP128 SSBP3 antisense RNA 1 ncRNA 172.25-26 chr15 55646717 55647168 + 0.5 NA intron (NM_173814, intron 11 of 19) intron (NM_173814, intron 11 of 19) -57971 NM_015617 26108 Hs.87194 NM_015617 ENSG00000171016 PYGO1 - pygopus family PHD finger 1 protein-coding 156.75-10 chr10 17999131 17999644 + 0.5 NA intron (NM_001282734, intron 9 of 11) intron (NM_001282734, intron 9 of 11) 11175 NR_038419 100129213 Hs.568816 NR_038419 ENSG00000226083 SLC39A12-AS1 - SLC39A12 antisense RNA 1 ncRNA 176.25-8 chr10 66860170 66860720 + 0.5 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -65591 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 212-38 chr7 35715781 35716590 + 0.5 NA promoter-TSS (NR_108082) promoter-TSS (NR_108082) -252 NR_108083 100506725 Hs.304253 NR_108082 ENSG00000227544 LOC100506725 - uncharacterized LOC100506725 ncRNA 157.5-101 chr8 61899607 61900071 + 0.5 NA Intergenic MER50-int|LTR|ERV1 10000 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 155.5-44 chr2 37677625 37678163 + 0.5 NA Intergenic Intergenic -5359 NM_001270436 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 202.5-30 chr2 113084083 113084641 + 0.5 NA Intergenic Tigger3a|DNA|TcMar-Tigger 12044 NM_032556 84639 Hs.306974 NM_032556 ENSG00000136697 IL1F10 FIL1-theta|FKSG75|IL-1HY2|IL-38|IL1-theta|IL1HY2 interleukin 1 family member 10 protein-coding 176.5-39 chr2 98765322 98765833 + 0.5 NA intron (NR_126337, intron 3 of 3) AluSz|SINE|Alu 6321 NR_126337 101927070 Hs.469395 NR_126337 LINC02611 - long intergenic non-protein coding RNA 2611 ncRNA 164.75-93 chr8 137120083 137120679 + 0.5 NA Intergenic Intergenic 293207 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 169-35 chr2 40822477 40822964 + 0.5 NA Intergenic L1PA13|LINE|L1 -310285 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 174-48 chr5 7444857 7445461 + 0.5 NA intron (NM_020546, intron 2 of 24) L1MC5a|LINE|L1 49021 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 151.25-14 chr11 39151360 39151804 + 0.5 NA Intergenic AluSz|SINE|Alu 502724 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 159.5-29 chr16 87469377 87469963 + 0.5 NA intron (NM_015144, intron 1 of 12) intron (NM_015144, intron 1 of 12) 22184 NM_015144 23174 Hs.156231 NM_015144 ENSG00000140948 ZCCHC14 BDG-29|BDG29 zinc finger CCHC-type containing 14 protein-coding 155-105 chr8 106134308 106134899 + 0.5 NA Intergenic Intergenic -74100 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 168.75-55 chr2 161388618 161389068 + 0.5 NA intron (NM_005805, intron 8 of 11) intron (NM_005805, intron 8 of 11) -27454 NM_006593 10716 Hs.210862 NM_006593 ENSG00000136535 TBR1 IDDAS|TBR-1|TES-56 T-box brain transcription factor 1 protein-coding 146.75-79 chr4 39005380 39005726 + 0.5 NA intron (NM_001303228, intron 1 of 6) THE1D|LTR|ERVL-MaLR 26856 NM_024943 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 259-14 chrUn_KI270442v1 110771 111448 + 0.5 NA NA ALR/Alpha|Satellite|centr NA NA 156.25-54 chr22 49502774 49503285 + 0.5 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) 40437 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 163.75-7 chr1 209913488 209913918 + 0.5 NA Intergenic Intergenic -24471 NR_027459 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 166-38 chr2 102339603 102340136 + 0.5 NA intron (NR_104167, intron 3 of 8) intron (NR_104167, intron 3 of 8) 2612 NM_003856 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 181.25-30 chr2 200400060 200400716 + 0.5 NA intron (NM_001100423, intron 3 of 12) intron (NM_001100423, intron 3 of 12) 91438 NM_001282744 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 158.25-51 chr2 52976867 52977493 + 0.5 NA Intergenic MER20B|DNA|hAT-Charlie -274565 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 147.25-69 chr5 18991172 18991607 + 0.5 NA Intergenic HAL1|LINE|L1 894883 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 250-3 chr10 8279290 8279896 + 0.5 NA Intergenic MIRc|SINE|MIR -11288 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 162.25-89 chr7 128371974 128372536 + 0.5 NA Intergenic AluJb|SINE|Alu -10565 NM_001114726 401399 Hs.381096 NM_001114726 ENSG00000224940 PRRT4 - proline rich transmembrane protein 4 protein-coding 160-56 chr4 12220680 12221089 + 0.5 NA Intergenic Intergenic -2567 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 147-76 chr4 56070148 56070660 + 0.5 NA Intergenic AluYc|SINE|Alu -99791 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 153-90 chr8 66841710 66842171 + 0.5 NA intron (NM_170709, intron 13 of 15) intron (NM_170709, intron 13 of 15) -28831 NM_001136161 157777 Hs.437006 NM_173518 ENSG00000178460 MCMDC2 C8orf45 minichromosome maintenance domain containing 2 protein-coding 148.5-14 chr10 90758732 90759313 + 0.5 NA intron (NM_019860, intron 1 of 2) AluSp|SINE|Alu 99017 NM_019859 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 238.5-35 chr7 53021281 53021954 + 0.5 NA Intergenic Intergenic -14016 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 203.25-30 chr4 67582904 67583580 + 0.5 NA intron (NM_012108, intron 5 of 8) intron (NM_012108, intron 5 of 8) 24515 NM_012108 26228 Hs.435579 NM_012108 ENSG00000035720 STAP1 BRDG1|STAP-1 signal transducing adaptor family member 1 protein-coding 147.75-56 chr2 128950155 128950685 + 0.5 NA Intergenic Intergenic 85820 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 225-25 chr7 83939219 83939772 + 0.5 NA Intergenic MamRep605|LTR?|LTR? 255294 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 149.75-86 chr6 139326517 139326924 + 0.5 NA Intergenic MER39|LTR|ERV1 -34722 NM_153235 167838 Hs.535820 NM_153235 ENSG00000164440 TXLNB C6orf198|LST001|MDP77|dJ522B19.2 taxilin beta protein-coding 150.25-83 chr5 98762049 98762488 + 0.5 NA Intergenic L1MB1|LINE|L1 -6364 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 151.25-6 chr10 4746133 4746668 + 0.5 NA Intergenic Intergenic -68330 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 MANCR LINC00704 mitotically associated long non coding RNA ncRNA 212.75-9 chr15 67615888 67616662 + 0.5 NA intron (NM_001206804, intron 8 of 21) intron (NM_001206804, intron 8 of 21) 67181 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 152.25-16 chr11 15677153 15677612 + 0.5 NA intron (NM_001293172, intron 1 of 2) L1ME1|LINE|L1 33497 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 170.5-74 chr8 86217778 86218219 + 0.5 NA intron (NM_138817, intron 2 of 3) intron (NM_138817, intron 2 of 3) 12383 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 208.5-64 chr9 32243685 32244377 + 0.5 NA Intergenic L2a|LINE|L2 -140572 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 173.5-62 chr4 109034743 109035423 + 0.5 NA intron (NM_198721, intron 4 of 36) intron (NM_198721, intron 4 of 36) 267575 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 199.75-55 chr7 157518951 157519732 + 0.5 NA Intergenic Intergenic 53110 NR_110157 101927914 Hs.623826 NR_110157 ENSG00000234210 LOC101927914 - uncharacterized LOC101927914 ncRNA 165.75 chr1 11715756 11716309 + 0.5 NA intron (NM_198545, intron 6 of 6) AluSz6|SINE|Alu -20053 NM_001040194 57085 Hs.464438 NM_020350 ENSG00000177674 AGTRAP ATRAP angiotensin II receptor associated protein protein-coding 162.25-18 chr14 47088927 47089423 + 0.5 NA intron (NM_001113498, intron 6 of 16) intron (NM_001113498, intron 6 of 16) 254071 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 189.5-67 chr8 48732269 48732780 + 0.5 NA intron (NM_024593, intron 1 of 5) intron (NM_024593, intron 1 of 5) 2744 NM_024593 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 200-31 chr3 148657155 148657664 + 0.5 NA Intergenic Intergenic -40462 NM_000685 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 255 chr12 10502665 10503369 + 0.5 NA Intergenic L1PA17|LINE|L1 -2876 NM_001357734 255308 Hs.547382 NM_001357731 ENSG00000180574 EIF2S3B EIF2S3L|eIF-2gA|eIF2gA eukaryotic translation initiation factor 2 subunit gamma B protein-coding 167.5-64 chr4 33377707 33378080 + 0.5 NA Intergenic Intergenic 662000 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 178.75-17 chr14 56744639 56745352 + 0.5 NA Intergenic AluSx|SINE|Alu 60672 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 165-7 chr10 54316122 54316528 + 0.5 NA intron (NM_001354411, intron 8 of 34) intron (NM_001354411, intron 8 of 34) -169905 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 210.5-11 chr14 30606835 30607587 + 0.5 NA intron (NM_017769, intron 11 of 14) intron (NM_017769, intron 11 of 14) -15043 NM_001283032 23256 Hs.369168 NM_016106 ENSG00000092108 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 159-78 chr6 155516424 155516982 + 0.5 NA intron (NR_134597, intron 2 of 2) L1MDa|LINE|L1 1859 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 178.75-39 chr22 44033650 44034134 + 0.5 NA intron (NM_001243386, intron 1 of 11) intron (NM_001243386, intron 1 of 11) 7588 NM_001243386 29780 Hs.475074 NM_013327 ENSG00000188677 PARVB CGI-56 parvin beta protein-coding 171-62 chr7 33654027 33654515 + 0.5 NA Intergenic Intergenic -250644 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 150.25-18 chr10 120564283 120564830 + 0.5 NA intron (NM_001030059, intron 5 of 6) L1ME3D|LINE|L1 -33393 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 156.25-41 chr2 104314955 104315528 + 0.5 NA Intergenic L1MC4a|LINE|L1 93091 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 156.25-61 chr4 55867653 55868163 + 0.5 NA intron (NM_001024924, intron 4 of 18) intron (NM_001024924, intron 4 of 18) 14258 NM_018261 55763 Hs.269665 NM_018261 ENSG00000090989 EXOC1 BM-102|SEC3|SEC3L1|SEC3P exocyst complex component 1 protein-coding 193.25-39 chr3 97369600 97370186 + 0.5 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -69714 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 207-50 chr8 62876209 62876881 + 0.5 NA intron (NM_001304533, intron 4 of 6) L1PA8A|LINE|L1 -101316 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 185.5-69 chr7 144856850 144857534 + 0.5 NA Intergenic Intergenic -21139 NM_022445 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 147.75-110 chr8 63595255 63595621 + 0.5 NA Intergenic Intergenic 129589 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 169.5-46 chr2 76376635 76377299 + 0.5 NA Intergenic Intergenic -608998 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 156.25-27 chr16 11536942 11537433 + 0.5 NA Intergenic AluSx3|SINE|Alu -9940 NM_001370704 400499 Hs.459937 NM_001370704 ENSG00000188897 LOC400499 - putative uncharacterized protein LOC400499 protein-coding 204.5-48 chr9 82761136 82761641 + 0.5 NA Intergenic Intergenic 301754 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 148.75-32 chr15 58439299 58439888 + 0.5 NA intron (NR_120338, intron 2 of 2) AluSg|SINE|Alu 7602 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 176.25-57 chr7 116507738 116508187 + 0.5 NA 3' UTR (NM_198212, exon 2 of 2) 3' UTR (NM_198212, exon 2 of 2) 7916 NM_001206748 858 Hs.212332 NM_001233 ENSG00000105971 CAV2 CAV caveolin 2 protein-coding 177.25-15 chr12 37303126 37303795 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -1013314 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 182.5-7 chr11 24579417 24580126 + 0.5 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 82718 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 182.75-47 chr4 45905941 45906493 + 0.5 NA Intergenic L1MA4|LINE|L1 217837 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 154.25-85 chr8 76805669 76806189 + 0.5 NA intron (NM_024721, intron 4 of 10) intron (NM_024721, intron 4 of 10) -122654 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 172.25-53 chr4 81020575 81020950 + 0.5 NA Intergenic Intergenic -9946 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 153-15 chr12 53414609 53415056 + 0.5 NA 3' UTR (NM_001251825, exon 6 of 6) 3' UTR (NM_001251825, exon 6 of 6) -9023 NM_020547 269 Hs.659889 NM_020547 ENSG00000135409 AMHR2 AMHR|MISR2|MISRII|MRII anti-Mullerian hormone receptor type 2 protein-coding 153.75-38 chr2 224208586 224209086 + 0.5 NA Intergenic MIRb|SINE|MIR -169517 NM_001136528 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 150.5-118 chr8 79740236 79740724 + 0.5 NA Intergenic Intergenic 25995 NM_001282851 23462 Hs.234434 NM_012258 ENSG00000164683 HEY1 BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1 hes related family bHLH transcription factor with YRPW motif 1 protein-coding 158-59 chr4 97604388 97604840 + 0.5 NA intron (NM_174952, intron 10 of 10) intron (NM_174952, intron 10 of 10) 237688 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 182.75-56 chr5 39222284 39222761 + 0.5 NA intron (NM_001243093, intron 1 of 18) intron (NM_001243093, intron 1 of 18) -2959 NM_018594 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 165-18 chr12 13509276 13509815 + 0.5 NA Intergenic L2a|LINE|L2 -132800 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 231-16 chr4 72712267 72712862 + 0.5 NA Intergenic Intergenic -143343 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 157.75-86 chr5 9326990 9327597 + 0.5 NA intron (NM_003966, intron 4 of 22) intron (NM_003966, intron 4 of 22) -184040 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 186.25-24 chr2 40376434 40377042 + 0.5 NA intron (NM_001351483, intron 2 of 8) LTR82B|LTR|ERVL 53566 NM_021097 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 168.75-47 chr2 103773279 103773807 + 0.5 NA Intergenic Intergenic 634789 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 152.25-66 chr3 131187547 131187961 + 0.5 NA intron (NM_001353043, intron 14 of 17) intron (NM_001353043, intron 14 of 17) 160026 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 199.25-8 chr11 84717472 84718085 + 0.5 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 3164 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 220.25-27 chr4 16578153 16578863 + 0.5 NA intron (NM_001304435, intron 5 of 7) L1MA3|LINE|L1 320137 NM_001290 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 160-73 chr6 48966890 48967421 + 0.5 NA Intergenic Intergenic 496098 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 148.25-12 chr10 120423422 120423962 + 0.5 NA Intergenic Intergenic -33262 NM_001318166 196051 Hs.40479 NM_001030059 ENSG00000203805 PLPP4 DPPL2|PPAPDC1|PPAPDC1A phospholipid phosphatase 4 protein-coding 159.25-66 chr5 157153807 157154397 + 0.5 NA Intergenic L1MDa|LINE|L1 -11237 NM_004270 9443 Hs.279902 NM_004270 ENSG00000155868 MED7 ARC34|CRSP33|CRSP9 mediator complex subunit 7 protein-coding 172.25-43 chr3 112617903 112618331 + 0.5 NA intron (NM_199512, intron 4 of 7) MIR|SINE|MIR -16148 NR_109779 100506621 Hs.86538 NR_109779 LINC01279 - long intergenic non-protein coding RNA 1279 ncRNA 147-86 chr5 44155315 44155828 + 0.5 NA Intergenic MER61-int|LTR|ERV1 -233161 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 149.5-55 chr21 31980648 31981069 + 0.5 NA intron (NM_014586, intron 7 of 10) AluSp|SINE|Alu 105437 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 152.75-81 chr5 92359040 92359508 + 0.5 NA Intergenic L1PA16|LINE|L1 -975957 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 191.25-31 chr16 60486826 60487298 + 0.5 NA Intergenic (ATGA)n|Simple_repeat|Simple_repeat -127269 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 243-12 chr2 179798527 179799240 + 0.5 NA intron (NR_148056, intron 1 of 9) L1MC5|LINE|L1 -52373 NM_001352815 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 159-80 chr7 33868951 33869450 + 0.5 NA Intergenic MER103C|DNA|hAT-Charlie -35715 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 165-65 chr5 11718909 11719544 + 0.5 NA intron (NM_001288717, intron 2 of 20) MIRb|SINE|MIR -130160 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 165.25-63 chr7 79747516 79748008 + 0.5 NA Intergenic AluSx1|SINE|Alu 293802 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 189.5-23 chr18 11222363 11222879 + 0.5 NA Intergenic L1MC|LINE|L1 -73859 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 237.5-29 chr7 26926492 26927139 + 0.5 NA Intergenic Intergenic -62225 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 193.5-68 chr7 19220881 19221457 + 0.5 NA Intergenic L3|LINE|CR1 -75748 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 151.75-64 chr3 145391682 145392268 + 0.5 NA Intergenic L1MB3|LINE|L1 677210 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 161.5-99 chr9 124158303 124158815 + 0.5 NA Intergenic AluJo|SINE|Alu -99047 NM_001166167 10783 Hs.197071 NM_014397 ENSG00000119408 NEK6 SID6-1512 NIMA related kinase 6 protein-coding 203.25-40 chr7 38653261 38653753 + 0.5 NA Intergenic L1ME3C|LINE|L1 -21940 NM_139316 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 153-60 chr4 36468719 36469242 + 0.5 NA Intergenic Intergenic -42552 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 193.5-70 chr7 61927513 61927973 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 1376313 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 184.75-78 chr9 28060836 28061544 + 0.5 NA intron (NM_152570, intron 5 of 6) L2a|LINE|L2 -487324 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 221.5-15 chr12 113374131 113374669 + 0.5 NA intron (NM_173542, intron 3 of 11) intron (NM_173542, intron 3 of 11) 15813 NM_001159727 196463 Hs.115896 NM_173542 ENSG00000151176 PLBD2 P76 phospholipase B domain containing 2 protein-coding 178.5-57 chr6 170587940 170588423 + 0.5 NA Intergenic MER4-int|LTR|ERV1 -3489 NM_001199461 5134 Hs.367900 NM_002598 ENSG00000071994 PDCD2 RP8|ZMYND7 programmed cell death 2 protein-coding 169.25-58 chr8 124733028 124733419 + 0.5 NA Intergenic Intergenic -4716 NM_001282974 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 178.25-30 chr2 179312516 179313159 + 0.5 NA Intergenic Intergenic -48005 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 151.25-13 chr11 16204093 16204626 + 0.5 NA intron (NM_033326, intron 4 of 15) intron (NM_033326, intron 4 of 15) 152187 NM_001367873 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 228-7 chr12 20948836 20949522 + 0.5 NA intron (NM_001371097, intron 13 of 15) HUERS-P3-int|LTR|ERV1 -66517 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 236.25-17 chr20 37951445 37952105 + 0.5 NA Intergenic L1ME3B|LINE|L1 48648 NM_080607 128434 Hs.517029 NM_080607 ENSG00000132821 VSTM2L C20orf102|dJ1118M15.2 V-set and transmembrane domain containing 2 like protein-coding 159.5-91 chr7 142034486 142034998 + 0.5 NA exon (NM_001365693, exon 16 of 71) exon (NM_001365693, exon 16 of 71) 38863 NM_004668 8972 Hs.122785 NM_004668 ENSG00000257335 MGAM MG|MGA maltase-glucoamylase protein-coding 149.75-22 chr12 96516182 96516661 + 0.5 NA intron (NM_001306084, intron 5 of 67) intron (NM_001306084, intron 5 of 67) 26844 NM_001367885 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 180.25-76 chr8 109520761 109521247 + 0.5 NA intron (NM_177531, intron 73 of 77) LTR81C|LTR|Gypsy -18696 NM_198120 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 230.25-21 chr2 186879467 186880225 + 0.5 NA Intergenic L1MA8|LINE|L1 -30676 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 180-14 chr12 85553235 85553938 + 0.5 NA Intergenic Intergenic 273366 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 158.25-79 chr4 113452537 113452906 + 0.5 NA 3' UTR (NM_001321585, exon 20 of 20) 3' UTR (NM_001321585, exon 20 of 20) 159882 NM_001354279 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 181.5-76 chr9 103540229 103540626 + 0.5 NA Intergenic Intergenic -215394 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 179.75-13 chr12 17496533 17497113 + 0.5 NA Intergenic L2c|LINE|L2 92255 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 235.75-25 chr5 101906175 101906778 + 0.5 NA Intergenic Tigger2|DNA|TcMar-Tigger 389808 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 166.5-78 chr7 7862939 7863479 + 0.5 NA intron (NM_001302350, intron 4 of 4) MIRc|SINE|MIR 105543 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 153.25-5 chr1 44448684 44449134 + 0.5 NA intron (NM_001319957, intron 1 of 13) intron (NM_001319957, intron 1 of 13) 24908 NM_001319957 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 155.5-12 chr10 105995367 105995857 + 0.5 NA Intergenic Intergenic -144553 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 162-70 chr7 8230114 8230593 + 0.5 NA intron (NM_001350836, intron 3 of 14) intron (NM_001350836, intron 3 of 14) 31699 NM_001350825 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 153-21 chr14 44768554 44769132 + 0.5 NA intron (NR_146457, intron 2 of 4) intron (NR_146457, intron 2 of 4) 30283 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 147-103 chr6 155160449 155160929 + 0.5 NA intron (NM_012454, intron 6 of 25) AluJb|SINE|Alu -56277 NM_001010927 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 197-12 chr18 60836372 60836868 + 0.5 NA Intergenic Intergenic -463845 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 204-41 chr8 50143853 50144653 + 0.5 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) -19878 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 152.75-85 chr6 127380940 127381495 + 0.5 NA Intergenic Intergenic -37608 NM_018479 55862 Hs.486410 NM_018479 ENSG00000093144 ECHDC1 HEL-S-76|MMCD|dJ351K20.2 ethylmalonyl-CoA decarboxylase 1 protein-coding 146.25-49 chr20 39906090 39906387 + 0.5 NA Intergenic Intergenic -98223 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 205.75-3 chr1 83946432 83947031 + 0.5 NA intron (NM_001350215, intron 5 of 19) intron (NM_001350215, intron 5 of 19) 52401 NM_001350215 79739 Hs.445826 NM_024686 ENSG00000137941 TTLL7 - tubulin tyrosine ligase like 7 protein-coding 175.5-42 chr18 60149280 60149847 + 0.5 NA Intergenic Intergenic 223212 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 180.75-73 chr8 126207491 126207905 + 0.5 NA Intergenic L1M5|LINE|L1 -117797 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 206.5-41 chr6 150415714 150416366 + 0.5 NA Intergenic L3|LINE|CR1 47028 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 183-14 chr14 46190993 46191465 + 0.5 NA intron (NR_102702, intron 1 of 3) L1MA2|LINE|L1 127070 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 156-80 chr6 62000087 62000581 + 0.5 NA intron (NR_146874, intron 3 of 13) MER117|DNA|hAT-Charlie 285891 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 155.75-76 chr4 47741571 47742062 + 0.5 NA intron (NM_006587, intron 5 of 21) L1MB7|LINE|L1 89147 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 149-68 chr3 157015816 157016369 + 0.5 NA intron (NM_001004316, intron 10 of 12) L1MEc|LINE|L1 -65749 NR_135546 105374177 Hs.634263 NR_135546 ENSG00000241544 LINC02029 - long intergenic non-protein coding RNA 2029 ncRNA 159.75-18 chr10 91945189 91945651 + 0.5 NA intron (NM_003972, intron 4 of 37) L1MB2|LINE|L1 21650 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 160-43 chr2 99693344 99693705 + 0.5 NA intron (NM_001025108, intron 10 of 23) intron (NM_001025108, intron 10 of 23) -203507 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 193.75-54 chr6 84787137 84787828 + 0.5 NA Intergenic MIR|SINE|MIR -22884 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 151-94 chr7 144516224 144516716 + 0.5 NA intron (NM_001042482, intron 7 of 7) intron (NM_001042482, intron 7 of 7) -106243 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 185.25-74 chr7 31265212 31265931 + 0.5 NA Intergenic L1ME3A|LINE|L1 75155 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 187.75-2 chr1 81408833 81409475 + 0.5 NA intron (NM_001366003, intron 2 of 27) intron (NM_001366003, intron 2 of 27) 102759 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 228-9 chr13 75015989 75016619 + 0.5 NA Intergenic Intergenic 224077 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 163.25-18 chr11 65836216 65836628 + 0.5 NA intron (NM_152760, intron 1 of 12) AluSz|SINE|Alu 2459 NM_152760 254122 Hs.591950 NM_152760 ENSG00000172803 SNX32 SNX6B sorting nexin 32 protein-coding 183.25-51 chr4 57993680 57994351 + 0.5 NA Intergenic Intergenic 542313 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 166.5-38 chr2 43377998 43378570 + 0.5 NA intron (NM_001083953, intron 29 of 37) L1MEd|LINE|L1 151073 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 156-68 chr4 93663714 93664308 + 0.5 NA intron (NM_001286838, intron 13 of 14) L2a|LINE|L2 -164742 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 153-19 chr13 71836130 71836570 + 0.5 NA intron (NM_080759, intron 1 of 10) MIRb|SINE|MIR 30842 NM_080760 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 148 chr1 29534966 29535312 + 0.5 NA Intergenic L1MEc|LINE|L1 -185025 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 173.5-96 chrX 76810063 76810538 + 0.5 NA intron (NR_110405, intron 1 of 2) L1MA2|LINE|L1 109060 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 196.5-22 chr19 33410726 33411175 + 0.5 NA intron (NM_001166056, intron 9 of 12) intron (NM_001166056, intron 9 of 12) 36426 NM_001252296 1054 Hs.429666 NM_001806 ENSG00000153879 CEBPG GPE1BP|IG/EBP-1 CCAAT enhancer binding protein gamma protein-coding 184.25-55 chr5 92607179 92607831 + 0.5 NA Intergenic (ATAC)n|Simple_repeat|Simple_repeat 963838 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 177.5-36 chr3 162227377 162228029 + 0.5 NA Intergenic Intergenic 730895 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 167.25-9 chr10 100680343 100680865 + 0.5 NA Intergenic L1ME3G|LINE|L1 -54792 NM_001304569 5076 Hs.155644 NM_000278 ENSG00000075891 PAX2 FSGS7|PAPRS paired box 2 protein-coding 170.75-74 chrX 85420643 85421127 + 0.5 NA Intergenic L1MA6|LINE|L1 -41220 NM_001307940 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 155.75-50 chr2 30428359 30428820 + 0.5 NA Intergenic Intergenic -18657 NM_182551 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 171.75-70 chr6 49584704 49585178 + 0.5 NA Intergenic Intergenic 34273 NR_146862 135398 Hs.722010 NM_153344 ENSG00000197261 C6orf141 - chromosome 6 open reading frame 141 protein-coding 172-10 chr1 241300377 241300875 + 0.5 NA intron (NM_001282778, intron 2 of 16) L1MC1|LINE|L1 55200 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 270-10 chr3 145968890 145969781 + 0.5 NA Intergenic MIR|SINE|MIR 99850 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 227.75-21 chr20 48886503 48887190 + 0.5 NA Intergenic MIR|SINE|MIR -34865 NM_006420 10564 Hs.62578 NM_006420 ENSG00000124198 ARFGEF2 BIG2|PVNH2|dJ1164I10.1 ADP ribosylation factor guanine nucleotide exchange factor 2 protein-coding 154-9 chr1 162328842 162329227 + 0.5 NA intron (NM_014697, intron 4 of 9) intron (NM_014697, intron 4 of 9) -13512 NR_030283 693141 NR_030283 ENSG00000207729 MIR556 MIRN556|hsa-mir-556|mir-556 microRNA 556 ncRNA 178.25-74 chr9 29018044 29018614 + 0.5 NA intron (NM_001354574, intron 1 of 5) L1PA16|LINE|L1 -129374 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 194-27 chr2 162706264 162706776 + 0.5 NA intron (NM_033272, intron 2 of 15) MIRb|SINE|MIR -62416 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 186.25-7 chr11 107274386 107275014 + 0.5 NA Intergenic Intergenic 183146 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19 like cell cycle control factor 2 protein-coding 154.75-36 chr18 76074810 76075183 + 0.5 NA Intergenic Intergenic -48002 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 192.75-57 chr6 53359034 53359738 + 0.5 NA Intergenic CpG -10207 NM_001242830 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 158.75-77 chr7 84713633 84714019 + 0.5 NA Intergenic MIRc|SINE|MIR 181350 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 154.25-61 chr4 84937827 84938382 + 0.5 NA intron (NM_014991, intron 1 of 67) L2a|LINE|L2 -27512 NR_152774 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 160.5-3 chr1 40589377 40589786 + 0.5 NA Intergenic AluJr|SINE|Alu 57944 NM_152373 127396 Hs.524767 NM_152373 ENSG00000117010 ZNF684 - zinc finger protein 684 protein-coding 153.25-115 chr9 7414485 7414987 + 0.5 NA Intergenic L1MCc|LINE|L1 385042 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 150.5-73 chr3 6833557 6833922 + 0.5 NA Intergenic Intergenic -27376 NM_181874 2917 Hs.606393 NM_000844 ENSG00000196277 GRM7 GLUR7|GPRC1G|MGLU7|MGLUR7|PPP1R87 glutamate metabotropic receptor 7 protein-coding 203-43 chr8 110465771 110466418 + 0.5 NA Intergenic (A)n|Simple_repeat|Simple_repeat -490323 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 164.25-12 chr1 216370967 216371527 + 0.5 NA intron (NM_206933, intron 3 of 71) L3|LINE|CR1 52149 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 197.75-31 chr18 79311200 79311807 + 0.5 NA intron (NR_148360, intron 16 of 31) intron (NR_148360, intron 16 of 31) -84427 NM_172388 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T cells 1 protein-coding 153.75-47 chr3 121445446 121445860 + 0.5 NA intron (NM_199420, intron 26 of 29) AluSz6|SINE|Alu 100335 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 210.5-35 chr5 59868238 59868844 + 0.5 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 25185 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 162.25-3 chr1 98218490 98219124 + 0.5 NA intron (NR_046088, intron 1 of 2) intron (NR_046088, intron 1 of 2) 8096 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 151-102 chr8 111464583 111465072 + 0.5 NA intron (NR_146282, intron 2 of 3) L1PB3|LINE|L1 88188 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 197.75-33 chr2 48150102 48150835 + 0.5 NA Intergenic L1M5|LINE|L1 -164214 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 180.5-57 chr5 10441928 10442467 + 0.5 NA promoter-TSS (NR_102746) promoter-TSS (NR_102746) 318 NM_001201466 83853 Hs.381089 NM_031916 ENSG00000145491 ROPN1L ASP|RSPH11 rhophilin associated tail protein 1 like protein-coding 245-4 chr14 50188139 50188784 + 0.5 NA intron (NM_006939, intron 5 of 22) intron (NM_006939, intron 5 of 22) 43117 NM_006939 6655 Hs.291533 NM_006939 ENSG00000100485 SOS2 NS9|SOS-2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 168.75-54 chr2 155809979 155810532 + 0.5 NA Intergenic Intergenic 444676 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 147.5-48 chr2 163864099 163864543 + 0.5 NA Intergenic L1ME3A|LINE|L1 -128313 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 175-4 chr1 208488887 208489489 + 0.5 NA Intergenic L1ME1|LINE|L1 -239500 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 150.5-29 chr11 96603686 96604230 + 0.5 NA Intergenic Intergenic 95533 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 164-74 chr7 5546642 5547136 + 0.5 NA Intergenic LTR16A|LTR|ERVL -16288 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 179.5-68 chr6 164005181 164005747 + 0.5 NA Intergenic Intergenic -333980 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 164.75-49 chr20 51219224 51219650 + 0.5 NA Intergenic Intergenic -196330 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 217-17 chr20 42938542 42939094 + 0.5 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) -29925 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 157.25-35 chr16 80299676 80300128 + 0.5 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -240832 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 171.75-71 chr6 87312909 87313487 + 0.5 NA intron (NM_198568, intron 2 of 2) intron (NM_198568, intron 2 of 2) -9390 NM_001287445 57150 Hs.70769 NM_020425 ENSG00000111850 SMIM8 C6orf162|dJ102H19.2 small integral membrane protein 8 protein-coding 216.75-39 chrX 67480039 67480523 + 0.5 NA Intergenic L1M4|LINE|L1 -63740 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 193.5-69 chr7 31593583 31594200 + 0.5 NA intron (NM_194300, intron 8 of 12) L1MC4a|LINE|L1 40889 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 145.75-107 chr6 164374735 164375307 + 0.5 NA Intergenic Intergenic 447042 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 176.25-2 chr1 66111329 66111942 + 0.5 NA intron (NM_001037340, intron 1 of 14) L1MB3|LINE|L1 -60917 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 164.25-52 chr20 41288490 41288960 + 0.5 NA intron (NM_015035, intron 1 of 3) intron (NM_015035, intron 1 of 3) 11395 NM_015035 23051 Hs.380133 NM_015035 ENSG00000174306 ZHX3 TIX1 zinc fingers and homeoboxes 3 protein-coding 149.5-56 chr3 2717838 2718330 + 0.5 NA intron (NM_175607, intron 4 of 24) L1MB7|LINE|L1 -174131 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 159-56 chr3 98510677 98511251 + 0.5 NA Intergenic Intergenic 11938 NM_001040181 56650 Hs.531371 NM_019895 ENSG00000080822 CLDND1 C3orf4|GENX-3745|Z38 claudin domain containing 1 protein-coding 192.75-10 chr10 109140658 109141424 + 0.5 NA Intergenic Intergenic 782205 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 148.5-37 chr18 74323166 74323604 + 0.5 NA intron (NM_001174123, intron 4 of 13) intron (NM_001174123, intron 4 of 13) 7546 NM_001174123 644041 Hs.465414 NM_001174123 ENSG00000206043 C18orf63 DKFZP781G0119 chromosome 18 open reading frame 63 protein-coding 148.25-65 chr4 80700443 80700965 + 0.5 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -330004 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 223.25 chr1 188734795 188735535 + 0.5 NA Intergenic (TTTTAT)n|Simple_repeat|Simple_repeat 1291537 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 171.5-87 chr6 129779338 129779926 + 0.5 NA Intergenic L1MEd|LINE|L1 -69455 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 159.5-19 chr14 53645512 53646084 + 0.5 NA Intergenic L1MEg|LINE|L1 302686 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 148.5 chr1 4216843 4217161 + 0.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -195049 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 200.5-36 chr21 30749798 30750519 + 0.5 NA Intergenic L1MA9|LINE|L1 -2899 NM_181617 337978 Hs.553699 NM_181617 ENSG00000187026 KRTAP21-2 KAP21.2 keratin associated protein 21-2 protein-coding 183.5-22 chr16 8637170 8637826 + 0.5 NA intron (NR_134608, intron 4 of 9) MIRc|SINE|MIR 15800 NR_134608 79091 Hs.306380 NM_024109 ENSG00000067365 METTL22 C16orf68 methyltransferase like 22 protein-coding 214.5-48 chr8 78262987 78263493 + 0.5 NA Intergenic Intergenic -253100 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 152.25-73 chr4 106627141 106627729 + 0.5 NA Intergenic L1PB1|LINE|L1 193811 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 178.25-33 chr21 21898898 21899384 + 0.5 NA Intergenic Intergenic 152156 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 177.25-49 chr3 188754402 188754846 + 0.5 NA intron (NM_001167672, intron 6 of 9) MER5B|DNA|hAT-Charlie 65843 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 157.25-15 chr11 103189937 103190479 + 0.5 NA intron (NM_001377, intron 45 of 88) intron (NM_001377, intron 45 of 88) 80782 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 184.25-24 chr16 22862195 22862890 + 0.5 NA intron (NM_006043, intron 1 of 1) intron (NM_006043, intron 1 of 1) 48380 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 177.25-67 chr6 136766539 136767126 + 0.5 NA intron (NM_005923, intron 1 of 29) intron (NM_005923, intron 1 of 29) -17215 NR_134635 101928429 Hs.672896 NR_134635 LOC101928429 - uncharacterized LOC101928429 ncRNA 157.25-21 chr14 61008579 61009199 + 0.5 NA intron (NR_033344, intron 3 of 16) intron (NR_033344, intron 3 of 16) -27199 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 177-64 chr7 91848819 91849425 + 0.5 NA Intergenic Intergenic 31580 NM_001301134 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 158.5-82 chr5 27488529 27489126 + 0.5 NA intron (NR_038848, intron 3 of 4) intron (NR_038848, intron 3 of 4) 16535 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 174-4 chr1 188658892 188659494 + 0.5 NA Intergenic L1MA1|LINE|L1 1215565 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 183.5-8 chr11 125048780 125049243 + 0.5 NA Intergenic Intergenic -14294 NM_198277 219855 Hs.352661 NM_198277 ENSG00000134955 SLC37A2 pp11662 solute carrier family 37 member 2 protein-coding 180.25-63 chr6 82694636 82695227 + 0.5 NA Intergenic Intergenic 330687 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 169.25-5 chr11 82135607 82135990 + 0.5 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) -244962 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 195.75-11 chr10 92713183 92713666 + 0.5 NA Intergenic L1ME1|LINE|L1 23469 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 173.5-25 chr15 65738991 65739549 + 0.5 NA intron (NM_005848, intron 5 of 31) intron (NM_005848, intron 5 of 31) -19938 NR_039736 100616379 NR_039736 ENSG00000264737 MIR4511 mir-4511 microRNA 4511 ncRNA 169-61 chr6 157950922 157951433 + 0.5 NA Intergenic L1MA2|LINE|L1 -30686 NM_003898 8871 Hs.434494 NM_003898 ENSG00000078269 SYNJ2 INPP5H synaptojanin 2 protein-coding 168.5-18 chr12 47181879 47182267 + 0.5 NA intron (NM_001281429, intron 2 of 2) CR1-L3A_Croc|LINE|CR1 -5739 NR_039847 100616486 NR_039847 ENSG00000263838 MIR4698 - microRNA 4698 ncRNA 160.25-57 chr5 51060159 51060650 + 0.5 NA Intergenic Intergenic -90217 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 184-50 chr6 124392428 124393104 + 0.5 NA intron (NM_153355, intron 3 of 5) intron (NM_153355, intron 3 of 5) 109761 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 147.25-2 chr1 69108046 69108495 + 0.5 NA intron (NR_146608, intron 3 of 4) intron (NR_146608, intron 3 of 4) 52372 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 159.75-10 chr1 222108741 222109171 + 0.5 NA Intergenic Intergenic -130436 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 152.25-99 chr8 107888246 107888633 + 0.5 NA Intergenic Intergenic 193500 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 178.25-64 chr7 53885454 53885969 + 0.5 NA Intergenic Intergenic -73780 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 231.25-25 chr3 45707795 45708519 + 0.5 NA intron (NM_001319071, intron 4 of 19) Tigger6a|DNA|TcMar-Tigger 18761 NM_001319073 22908 Hs.156509 NM_014016 ENSG00000211456 SACM1L SAC1 SAC1 like phosphatidylinositide phosphatase protein-coding 186.75-85 chr9 103229218 103229760 + 0.5 NA intron (NR_121578, intron 6 of 9) intron (NR_121578, intron 6 of 9) 95544 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 162.5-42 chr2 36495982 36496470 + 0.5 NA intron (NM_016441, intron 7 of 16) intron (NM_016441, intron 7 of 16) 101942 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 155.25-19 chr12 3475237 3475677 + 0.5 NA intron (NM_001256536, intron 1 of 9) intron (NM_001256536, intron 1 of 9) -15746 NM_019854 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 174.25-26 chr18 12708160 12708675 + 0.5 NA intron (NM_147163, intron 2 of 6) AluSp|SINE|Alu 5375 NM_020232 56984 Hs.464652 NM_020232 ENSG00000128789 PSMG2 CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 proteasome assembly chaperone 2 protein-coding 169-41 chr3 16574377 16574946 + 0.5 NA Intergenic L1PA14|LINE|L1 30129 NM_001190811 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 212.5-60 chrX 82078220 82078787 + 0.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR 876401 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 147.25-35 chr15 57078787 57079315 + 0.5 NA intron (NM_001322158, intron 5 of 20) intron (NM_001322158, intron 5 of 20) -140379 NM_001306220 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 179.5-71 chr7 69186233 69186696 + 0.5 NA Intergenic Intergenic 411160 NR_148926 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 209-14 chr14 46045453 46046219 + 0.5 NA Intergenic L1M1|LINE|L1 -18323 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 149.25-100 chr7 140921562 140922033 + 0.5 NA intron (NR_148928, intron 1 of 17) intron (NR_148928, intron 1 of 17) 3132 NM_004333 673 Hs.324250 NM_004333 ENSG00000157764 BRAF B-RAF1|B-raf|BRAF1|NS7|RAFB1 B-Raf proto-oncogene, serine/threonine kinase protein-coding 147-77 chr4 59053649 59054089 + 0.5 NA Intergenic Intergenic 40296 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 166-57 chr5 52381365 52381927 + 0.5 NA Intergenic Intergenic 373615 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 196-40 chr6 27950306 27950826 + 0.5 NA Intergenic Intergenic -6675 NM_012367 26212 Hs.532145 NM_012367 ENSG00000124657 OR2B6 OR2B1|OR2B1P|OR2B5|OR2B6P|OR5-40|OR5-41|OR6-31|dJ408B20.2 olfactory receptor family 2 subfamily B member 6 protein-coding 288.75-12 chr7 69345501 69346389 + 0.5 NA Intergenic Intergenic 251679 NR_148926 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 170.25-8 chr11 30023663 30024237 + 0.5 NA Intergenic MIRc|SINE|MIR -6920 NM_002233 3739 Hs.592002 NM_002233 ENSG00000182255 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|MCIDDS|PCN2 potassium voltage-gated channel subfamily A member 4 protein-coding 174-17 chr14 54156448 54157126 + 0.5 NA Intergenic Intergenic -199896 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 172.75-46 chr4 54483397 54483799 + 0.5 NA Intergenic Intergenic 123533 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 174.5-46 chr20 14182373 14182861 + 0.5 NA intron (NM_001351663, intron 3 of 17) L1MB7|LINE|L1 154995 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 203.5-24 chr18 79968169 79968887 + 0.5 NA intron (NM_001136180, intron 3 of 3) AluSx|SINE|Alu 3885 NM_001136180 440498 Hs.191582 NM_001136180 ENSG00000226742 HSBP1L1 - heat shock factor binding protein 1 like 1 protein-coding 153-78 chr6 61711653 61712240 + 0.5 NA intron (NR_146872, intron 7 of 9) intron (NR_146872, intron 7 of 9) 137816 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 159.75-89 chr6 141584540 141584991 + 0.5 NA Intergenic L1MEd|LINE|L1 504034 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 146-38 chr18 71112750 71113251 + 0.5 NA Intergenic Intergenic -462046 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 175.5-78 chr5 83455081 83455626 + 0.5 NA Intergenic L1MA9|LINE|L1 -16321 NM_001164097 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 157.25-10 chr10 105574707 105575148 + 0.5 NA Intergenic L3|LINE|CR1 245406 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 151-50 chr21 15310973 15311448 + 0.5 NA Intergenic MER47A|DNA|TcMar-Tigger -246210 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 196.25-3 chr1 157474169 157474741 + 0.5 NA Intergenic AluSq2|SINE|Alu 78060 NM_001195388 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 219.5-2 chr10 25412116 25412737 + 0.5 NA exon (NM_020752, exon 4 of 11) exon (NM_020752, exon 4 of 11) -236150 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 294.25-12 chr4 34130492 34131581 + 0.5 NA intron (NR_147184, intron 2 of 3) L1MA3|LINE|L1 -91143 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 188-11 chr10 69056674 69057261 + 0.5 NA Intergenic Intergenic -30636 NM_001321053 5552 Hs.1908 NM_002727 ENSG00000122862 SRGN PPG|PRG|PRG1 serglycin protein-coding 184.25-4 chr1 165073396 165074006 + 0.5 NA Intergenic MER20B|DNA|hAT-Charlie 282540 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 206-15 chr2 51206259 51206797 + 0.5 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 173927 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 190-48 chr5 25953240 25953879 + 0.5 NA Intergenic Intergenic 762606 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 201.5-23 chr18 33730990 33731621 + 0.5 NA intron (NM_030632, intron 8 of 11) intron (NM_030632, intron 8 of 11) 153086 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 178.25-7 chr10 76893198 76893798 + 0.5 NA intron (NM_001271519, intron 26 of 28) AluSx1|SINE|Alu 5454 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 150.5-43 chr14 79176668 79177187 + 0.5 NA intron (NR_073547, intron 14 of 20) (GATG)n|Simple_repeat|Simple_repeat -23055 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 148-76 chr5 144410514 144411032 + 0.5 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 205382 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 154.25-50 chr2 181296377 181296881 + 0.5 NA intron (NR_130784, intron 3 of 4) L1M1|LINE|L1 9023 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 189.75-9 chr1 109549841 109550317 + 0.5 NA intron (NM_006496, intron 1 of 8) intron (NM_006496, intron 1 of 8) 1464 NM_006496 2773 Hs.73799 NM_006496 ENSG00000065135 GNAI3 87U6|ARCND1 G protein subunit alpha i3 protein-coding 275-5 chr14 20599577 20600506 + 0.5 NA intron (NR_122043, intron 3 of 4) L2b|LINE|L2 -9218 NM_001024822 493901 Hs.729466 NM_001024822 ENSG00000258436 RNASE12 HEL-S-85p|RAI1 ribonuclease A family member 12 (inactive) protein-coding 160.25-14 chr11 90186844 90187437 + 0.5 NA intron (NM_001300930, intron 17 of 17) L1PA2|LINE|L1 35909 NM_012124 26973 Hs.22857 NM_012124 ENSG00000110172 CHORDC1 CHP1 cysteine and histidine rich domain containing 1 protein-coding 152.5-24 chr14 30008949 30009526 + 0.5 NA Intergenic L1MEd|LINE|L1 -81390 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 199.75-61 chr9 38135705 38136323 + 0.5 NA Intergenic MIR3|SINE|MIR -66787 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 156.5-114 chr9 84692342 84692806 + 0.5 NA intron (NM_001369550, intron 1 of 11) AluSx|SINE|Alu -9031 NM_001369551 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 155.5-31 chr14 57093778 57094218 + 0.5 NA Intergenic LTR33A|LTR|ERVL 174907 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 149-29 chr16 35310628 35310979 + 0.5 NA Intergenic Intergenic -52613 NR_027080 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 147.75-95 chr6 67428747 67429252 + 0.5 NA Intergenic Intergenic -626352 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 162.5-76 chr6 128526248 128526732 + 0.5 NA Intergenic Intergenic -5891 NM_001291983 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 209-47 chr8 131464071 131464570 + 0.5 NA Intergenic Intergenic -423411 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 147.5-70 chr4 87740595 87741153 + 0.5 NA Intergenic L1M7|LINE|L1 -58680 NM_004967 3381 Hs.518726 NM_004967 ENSG00000029559 IBSP BNSP|BSP|BSP-II|SP-II integrin binding sialoprotein protein-coding 169-33 chr2 29466353 29466888 + 0.5 NA intron (NM_004304, intron 4 of 28) intron (NM_004304, intron 4 of 28) 8757 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 181.75-69 chr9 70569122 70569847 + 0.5 NA intron (NM_001366143, intron 21 of 25) intron (NM_001366143, intron 21 of 25) -154827 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 157.75-96 chr6 53389083 53389540 + 0.5 NA Intergenic Intergenic -40132 NM_001242830 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 201.25-28 chr20 3217465 3218154 + 0.5 NA intron (NM_001324236, intron 4 of 6) L1MC5a|LINE|L1 8311 NM_001324236 3704 Hs.415299 NM_033453 ENSG00000125877 ITPA C20orf37|HLC14-06-P|ITPase|My049|NTPase|dJ794I6.3 inosine triphosphatase protein-coding 163.25-9 chr1 159137963 159138526 + 0.5 NA Intergenic L2a|LINE|L2 -33371 NM_021189 57863 Hs.365689 NM_021189 ENSG00000162706 CADM3 BIgR|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3 cell adhesion molecule 3 protein-coding 251.25-15 chr2 65126134 65126825 + 0.5 NA intron (NM_015543, intron 1 of 3) intron (NM_015543, intron 1 of 3) 3627 NM_004161 5861 Hs.310645 NM_004161 ENSG00000138069 RAB1A RAB1|YPT1 RAB1A, member RAS oncogene family protein-coding 191-35 chr3 162062358 162062988 + 0.5 NA Intergenic Intergenic 565865 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 147-82 chr4 181025931 181026319 + 0.5 NA Intergenic Intergenic 133024 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 161.5-55 chr22 27194153 27194673 + 0.5 NA Intergenic Intergenic 6897 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 186-39 chr5 119773392 119773971 + 0.5 NA Intergenic HAL1ME|LINE|L1 144122 NM_182761 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 146 chr1 61534769 61535312 + 0.5 NA Intergenic Intergenic -119202 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 156.5-105 chr7 101715748 101716123 + 0.5 NA Intergenic Intergenic -86639 NM_138403 93408 Hs.247831 NM_138403 ENSG00000106436 MYL10 MYLC2PL|PLRLC myosin light chain 10 protein-coding 159.25-55 chr3 179092964 179093379 + 0.5 NA Intergenic L1MC4a|LINE|L1 -21362 NM_022470 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 161.25-72 chr8 122112660 122113233 + 0.5 NA Intergenic Intergenic 455698 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 169.75-41 chr2 172717195 172717587 + 0.5 NA Intergenic MLT1F1|LTR|ERVL-MaLR -18454 NM_007023 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 178.75-4 chr1 73175538 73175917 + 0.5 NA Intergenic Intergenic -130443 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 179.25-81 chr9 84506592 84506981 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -138059 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 163-58 chr4 30802022 30802654 + 0.5 NA intron (NM_032457, intron 1 of 2) L2c|LINE|L2 81969 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 196.75-6 chr1 241777740 241778386 + 0.5 NA intron (NM_001367482, intron 21 of 27) L1MCa|LINE|L1 -70128 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 202.25-8 chr11 23344016 23344738 + 0.5 NA Intergenic L1MC1|LINE|L1 74813 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 225.25-31 chr6 2982539 2983207 + 0.5 NA Intergenic Intergenic -5094 NR_026856 401232 Hs.720158 NM_207495 LINC01011 - long intergenic non-protein coding RNA 1011 ncRNA 177-39 chr3 44868089 44868473 + 0.5 NA Intergenic L1MB7|LINE|L1 -6327 NM_003241 7047 Hs.438265 NM_003241 ENSG00000163810 TGM4 TGP|hTGP transglutaminase 4 protein-coding 202.75-43 chr7 91144474 91145274 + 0.5 NA intron (NM_012395, intron 13 of 13) intron (NM_012395, intron 13 of 13) -119559 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 153.75-94 chr9 23982873 23983388 + 0.5 NA Intergenic Intergenic -132529 NM_001351460 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 206.5-34 chr5 4176722 4177182 + 0.5 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 581120 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 199.25-56 chr6 68085948 68086558 + 0.5 NA Intergenic MER11C|LTR|ERVK 30902 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 193-31 chr3 48805557 48806130 + 0.5 NA intron (NM_001321982, intron 2 of 11) intron (NM_001321982, intron 2 of 11) 42031 NM_001321989 5576 Hs.631923 NM_004157 ENSG00000114302 PRKAR2A PKR2|PRKAR2 protein kinase cAMP-dependent type II regulatory subunit alpha protein-coding 225.75-18 chr3 146672623 146673346 + 0.5 NA Intergenic L1PA16|LINE|L1 -66768 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 199.75-50 chr7 13720006 13720458 + 0.5 NA Intergenic Intergenic 266282 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 194.75-45 chr7 17176606 17177181 + 0.5 NA Intergenic MER41E|LTR|ERV1 -121759 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 161.25-55 chr5 19686381 19686840 + 0.5 NA intron (NM_001349562, intron 5 of 13) Tigger9b|DNA|TcMar-Tigger 199662 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 187.25-59 chr7 6224735 6225304 + 0.5 NA intron (NM_001367581, intron 1 of 13) L1MB5|LINE|L1 47605 NM_001367580 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 185-52 chr4 59223848 59224404 + 0.5 NA Intergenic A-rich|Low_complexity|Low_complexity 210553 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 203.5-70 chr8 78253978 78254493 + 0.5 NA Intergenic Intergenic -262105 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 202.75-27 chr2 172837167 172837733 + 0.5 NA intron (NM_001100397, intron 1 of 27) MIRb|SINE|MIR 15863 NM_001100397 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 148.5-21 chr12 50400752 50401143 + 0.5 NA promoter-TSS (NM_001352322) promoter-TSS (NM_001352322) 62 NM_001352311 113251 Hs.26613 NM_052879 ENSG00000161813 LARP4 PP13296 La ribonucleoprotein domain family member 4 protein-coding 161.75-45 chr3 28524641 28524996 + 0.5 NA non-coding (NR_136708, exon 8 of 8) non-coding (NR_136708, exon 8 of 8) -50460 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 153.75-68 chr5 120904619 120905015 + 0.5 NA Intergenic L1PA15-16|LINE|L1 373353 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 159.75-105 chr9 88596461 88597082 + 0.5 NA Intergenic MER21C|LTR|ERVL 61593 NM_145283 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2|RdCVF2L nucleoredoxin like 2 protein-coding 180-53 chr5 74946179 74946818 + 0.5 NA Intergenic L1MA4A|LINE|L1 -79532 NM_015566 26049 Hs.91662 NM_015566 ENSG00000198780 FAM169A SLAP75 family with sequence similarity 169 member A protein-coding 156.5-112 chr8 125102491 125103100 + 0.5 NA intron (NM_001349486, intron 3 of 7) intron (NM_001349486, intron 3 of 7) 10935 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 167.5-40 chr2 60968844 60969328 + 0.5 NA intron (NM_144709, intron 5 of 17) intron (NM_144709, intron 5 of 17) 48126 NM_001322124 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridine synthase 10 protein-coding 150.5-94 chr5 38571029 38571389 + 0.5 NA intron (NR_103554, intron 1 of 8) intron (NR_103554, intron 1 of 8) -13648 NR_037423 100500824 NR_037423 ENSG00000265304 MIR3650 - microRNA 3650 ncRNA 152.75-16 chr10 84660663 84661115 + 0.5 NA Intergenic Intergenic 235720 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 153.5-20 chr11 81361367 81361790 + 0.5 NA Intergenic Intergenic 529258 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 163.25-8 chr1 153152978 153153556 + 0.5 NA Intergenic Intergenic -2377 NM_001014291 6706 Hs.490253 NM_001014291 ENSG00000159516 SPRR2G - small proline rich protein 2G protein-coding 220.5 chr1 44387657 44388251 + 0.5 NA Intergenic L1M5|LINE|L1 -17206 NM_001319956 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 207-35 chr4 94923461 94924106 + 0.5 NA intron (NM_001203, intron 2 of 12) intron (NM_001203, intron 2 of 12) -72449 NM_001256792 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 179-60 chr8 74440336 74440826 + 0.5 NA intron (NM_001362931, intron 5 of 5) intron (NM_001362931, intron 5 of 5) 90178 NM_001362931 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 160.5-105 chr7 42525505 42525868 + 0.5 NA Intergenic Intergenic 180761 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 162-82 chr9 10857691 10858172 + 0.5 NA Intergenic Intergenic 244725 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 153.75-31 chr2 52164171 52164710 + 0.5 NA intron (NR_135237, intron 7 of 10) L1ME1|LINE|L1 -206208 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 171.75-67 chr5 147565338 147565946 + 0.5 NA intron (NR_038902, intron 1 of 3) intron (NR_038902, intron 1 of 3) 5648 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 146-90 chr7 140980672 140981141 + 0.5 NA Intergenic L1ME4a|LINE|L1 33773 NM_016071 51650 Hs.416207 NM_016071 ENSG00000090263 MRPS33 CGI-139|MRP-S33|PTD003|S33mt mitochondrial ribosomal protein S33 protein-coding 155-27 chr14 35292944 35293503 + 0.5 NA intron (NM_001282232, intron 1 of 6) intron (NM_001282232, intron 1 of 6) 841 NM_002791 5687 Hs.446260 NM_002791 ENSG00000100902 PSMA6 IOTA|PROS27|p27K proteasome subunit alpha 6 protein-coding 187-24 chr20 62838872 62839456 + 0.5 NA intron (NM_001853, intron 31 of 31) AluSx1|SINE|Alu -5402 NM_080750 100132911 NM_080750 DPH3P1 C20orf143|DPH3B|ZCSL1 diphthamide biosynthesis 3 pseudogene 1 protein-coding 171-11 chr11 37765235 37765723 + 0.5 NA Intergenic L1MB3|LINE|L1 -173122 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 154.75-76 chr4 101100088 101100632 + 0.5 NA intron (NM_001130691, intron 3 of 12) intron (NM_001130691, intron 3 of 12) 140512 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 157-69 chr4 102064096 102064619 + 0.5 NA intron (NM_017935, intron 13 of 16) intron (NM_017935, intron 13 of 16) 250515 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 183-22 chr2 2384036 2384549 + 0.5 NA Intergenic L2a|LINE|L2 -53017 NM_001329844 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 154.75-101 chr8 123780564 123781140 + 0.5 NA intron (NM_144963, intron 8 of 23) intron (NM_144963, intron 8 of 23) 12413 NM_001317917 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 168.75-50 chr2 125343279 125343860 + 0.5 NA Intergenic L1PA17|LINE|L1 774416 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 230.25-25 chr4 40145612 40146164 + 0.5 NA intron (NM_001318359, intron 17 of 18) AluSx|SINE|Alu -45192 NM_001278368 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 237.5-30 chr8 78603682 78604606 + 0.5 NA 3' UTR (NM_006823, exon 4 of 4) 3' UTR (NM_006823, exon 4 of 4) -45641 NR_125389 101927003 Hs.614849 NR_125389 ENSG00000254266 PKIA-AS1 - PKIA antisense RNA 1 ncRNA 153.75 chr1 107155018 107155621 + 0.5 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 7250 NM_001113226 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 195.75-44 chr3 20403726 20404141 + 0.5 NA Intergenic Intergenic 61465 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 190.75-40 chr22 22751397 22752018 + 0.5 NA Intergenic LTR12B|LTR|ERV1 -71069 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 154-35 chr15 68571240 68571813 + 0.5 NA intron (NM_001324014, intron 2 of 12) FordPrefect|DNA|hAT-Tip100 -7467 NM_006091 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 172.25-75 chr9 109494753 109495377 + 0.5 NA intron (NM_001145368, intron 1 of 24) intron (NM_001145368, intron 1 of 24) 3242 NM_001145368 5774 Hs.436429 NM_002829 ENSG00000070159 PTPN3 PTP-H1|PTPH1 protein tyrosine phosphatase non-receptor type 3 protein-coding 183.75-44 chr2 57030281 57030850 + 0.5 NA Intergenic Intergenic -844795 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 178-12 chr11 82383983 82384516 + 0.5 NA intron (NR_120571, intron 1 of 7) L1MA2|LINE|L1 19664 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 180.5-33 chr19 34440040 34440503 + 0.5 NA intron (NM_005499, intron 6 of 16) AluSz6|SINE|Alu 11890 NM_005499 10054 Hs.631580 NM_005499 ENSG00000126261 UBA2 ARX|HRIHFB2115|SAE2 ubiquitin like modifier activating enzyme 2 protein-coding 174.25-57 chr5 179896256 179896848 + 0.5 NA intron (NM_198868, intron 3 of 21) AluSz6|SINE|Alu 11345 NM_198868 23061 Hs.155829 NM_015043 ENSG00000197226 TBC1D9B GRAMD9B TBC1 domain family member 9B protein-coding 155.5-89 chr6 56930512 56930897 + 0.5 NA intron (NM_001144769, intron 2 of 96) Tigger8|DNA|TcMar-Tigger 24126 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 156-91 chr8 78145367 78145966 + 0.5 NA Intergenic Intergenic -370674 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 246.75-15 chr5 17713325 17713921 + 0.5 NA Intergenic Tigger6a|DNA|TcMar-Tigger -57985 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 165.5-78 chr6 47915350 47915922 + 0.5 NA intron (NM_207499, intron 2 of 2) intron (NM_207499, intron 2 of 2) 128568 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 207.25-27 chr18 35636928 35637537 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -17337 NM_020474 2589 Hs.514806 NM_020474 ENSG00000141429 GALNT1 GALNAC-T1 polypeptide N-acetylgalactosaminyltransferase 1 protein-coding 191.75-4 chr1 222564388 222564923 + 0.5 NA intron (NM_001201536, intron 7 of 11) intron (NM_001201536, intron 7 of 11) -16551 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 154.5-86 chr7 20800772 20801168 + 0.5 NA Intergenic Intergenic -14084 NM_182700 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 187.75-64 chr6 94562351 94562938 + 0.5 NA Intergenic Intergenic 844341 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 172.5-80 chr8 59290836 59291361 + 0.5 NA Intergenic Intergenic 171888 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 182.5-6 chr10 126052404 126052786 + 0.5 NA intron (NM_001288974, intron 14 of 18) intron (NM_001288974, intron 14 of 18) -79322 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 200.75-51 chr7 78642021 78642475 + 0.5 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) 295006 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 197.75-57 chr5 106815172 106815841 + 0.5 NA non-coding (NR_104671, exon 4 of 4) non-coding (NR_104671, exon 4 of 4) 195508 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 192.5-64 chr9 73525577 73526023 + 0.5 NA Intergenic Intergenic 373935 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 170.75-55 chr5 92800009 92800511 + 0.5 NA Intergenic Intergenic 771083 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 175-22 chr2 222996743 222997318 + 0.5 NA Intergenic L1MEf|LINE|L1 -54900 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 145.75-76 chr3 54369349 54369892 + 0.5 NA intron (NM_018398, intron 3 of 37) intron (NM_018398, intron 3 of 37) 247068 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 151.75-121 chr9 91051775 91052216 + 0.5 NA Intergenic L1MB1|LINE|L1 23137 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 174.25-28 chr2 82370530 82371120 + 0.5 NA Intergenic Intergenic -485978 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 166.75-24 chr13 85766216 85766826 + 0.5 NA Intergenic MIR|SINE|MIR 32898 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 162.75-18 chr12 12892341 12892852 + 0.5 NA intron (NM_003979, intron 1 of 3) AluSp|SINE|Alu 1574 NM_003979 9052 Hs.631733 NM_003979 ENSG00000013588 GPRC5A GPCR5A|PEIG-1|RAI3|RAIG1|TIG1 G protein-coupled receptor class C group 5 member A protein-coding 157.75-16 chr10 61050689 61051152 + 0.5 NA Intergenic Intergenic 34645 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 150.25-35 chr14 58361653 58362221 + 0.5 NA intron (NM_002892, intron 19 of 23) intron (NM_002892, intron 19 of 23) -33993 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 146.25-3 chr1 45375014 45375467 + 0.5 NA intron (NM_007170, intron 4 of 10) L2a|LINE|L2 -34770 NM_001293192 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 227.5-22 chr5 13169567 13170216 + 0.5 NA Intergenic Intergenic -137005 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 174.75-17 chr12 40890192 40890672 + 0.5 NA intron (NM_001256064, intron 1 of 15) L1MC1|LINE|L1 -17925 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 171.75-24 chr14 80711686 80712109 + 0.5 NA intron (NM_152446, intron 19 of 24) intron (NM_152446, intron 19 of 24) 229841 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 173.5-21 chr13 47039202 47039787 + 0.5 NA Intergenic Tigger18a|DNA|TcMar-Tigger -142418 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 147.75-90 chr5 109065502 109065933 + 0.5 NA intron (NR_146155, intron 16 of 19) intron (NR_146155, intron 16 of 19) 141111 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 166.5-67 chr5 113371209 113371841 + 0.5 NA intron (NM_001085377, intron 2 of 18) intron (NM_001085377, intron 2 of 18) 63464 NM_032028 83942 Hs.519507 NM_032028 ENSG00000212122 TSSK1B FKSG81|SPOGA4|STK22D|TSK1|TSSK1 testis specific serine kinase 1B protein-coding 161.5-52 chr2 212904437 212905079 + 0.5 NA Intergenic L2-3_Crp|LINE|L2 -21499 NR_039935 100616267 NR_039935 ENSG00000266354 MIR4776-1 mir-4776-1 microRNA 4776-1 ncRNA 166-62 chr6 121971785 121972308 + 0.5 NA Intergenic Intergenic -427505 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 182.25-52 chr7 26339110 26339633 + 0.5 NA intron (NM_001318199, intron 1 of 6) AluJb|SINE|Alu -21513 NM_001199837 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 196.75-8 chr10 97009626 97010364 + 0.5 NA intron (NM_003061, intron 31 of 36) L1MB8|LINE|L1 -92761 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 171.5-35 chr16 79791201 79791788 + 0.5 NA intron (NR_104660, intron 1 of 3) MLT1C|LTR|ERVL-MaLR -3755 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 159.5-5 chr1 189119115 189119564 + 0.5 NA Intergenic Intergenic 1356671 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 202.75-14 chr12 44378410 44379026 + 0.5 NA intron (NM_001286213, intron 6 of 6) intron (NM_001286213, intron 6 of 6) 496943 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 184.5-32 chr15 68937345 68937957 + 0.5 NA intron (NM_001184780, intron 1 of 15) intron (NM_001184780, intron 1 of 15) 7126 NM_145658 246777 Hs.657932 NM_145658 ENSG00000258484 SPESP1 ESP|SP-ESP sperm equatorial segment protein 1 protein-coding 177-49 chr5 3289151 3289835 + 0.5 NA Intergenic Intergenic 111658 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 168-6 chr1 99240956 99241403 + 0.5 NA Intergenic L2c|LINE|L2 -23113 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 170.5-11 chr12 7630736 7631256 + 0.5 NA Intergenic AluSx|SINE|Alu 34912 NM_001644 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 168.25-30 chr19 4004017 4004517 + 0.5 NA Intergenic AluSz6|SINE|Alu -3469 NM_015897 51588 Hs.105779 NM_015897 ENSG00000105229 PIAS4 PIAS-gamma|PIASY|Piasg|ZMIZ6 protein inhibitor of activated STAT 4 protein-coding 226.25-25 chr7 73795357 73796214 + 0.5 NA Intergenic AluSz|SINE|Alu -25515 NM_001306 1365 Hs.647023 NM_001306 ENSG00000165215 CLDN3 C7orf1|CPE-R2|CPETR2|HRVP1|RVP1 claudin 3 protein-coding 155.5-4 chr1 76398014 76398502 + 0.5 NA intron (NM_001349111, intron 3 of 5) MER103C|DNA|hAT-Charlie 323512 NM_001349106 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 174.5-18 chr10 122418033 122418614 + 0.5 NA intron (NM_001330178, intron 9 of 13) intron (NM_001330178, intron 9 of 13) 1358 NR_037506 100500866 NR_037506 ENSG00000265442 MIR3941 - microRNA 3941 ncRNA 200.25-55 chr8 133549046 133549566 + 0.5 NA intron (NM_003033, intron 1 of 8) AluSp|SINE|Alu 22581 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 198-45 chr8 112318946 112319599 + 0.5 NA intron (NM_001363185, intron 42 of 66) intron (NM_001363185, intron 42 of 66) -324221 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 169-43 chr3 82577783 82578387 + 0.5 NA Intergenic AluJb|SINE|Alu 591943 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 164.75-83 chr7 33302639 33303105 + 0.5 NA intron (NM_198428, intron 9 of 22) L1MA3|LINE|L1 173308 NM_001348040 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 200.25-12 chr12 59666418 59667048 + 0.5 NA intron (NM_001270622, intron 2 of 5) THE1B|LTR|ERVL-MaLR -22637 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 168.5-42 chr18 63451016 63451418 + 0.5 NA Intergenic Intergenic -25741 NM_002639 5268 Hs.55279 NM_002639 ENSG00000206075 SERPINB5 PI5|maspin serpin family B member 5 protein-coding 220-29 chr6 61199797 61200523 + 0.5 NA Intergenic MER52-int|LTR|ERV1 -373970 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 159.25-14 chr12 89156371 89156901 + 0.5 NA Intergenic Intergenic -136944 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 204.25-56 chrX 76818612 76819298 + 0.5 NA intron (NR_110405, intron 1 of 2) L1MB5|LINE|L1 100405 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 202-8 chr12 115816733 115817268 + 0.5 NA Intergenic L2b|LINE|L2 331654 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 199.75-53 chr7 44703351 44703989 + 0.5 NA intron (NM_002541, intron 20 of 22) AluSz|SINE|Alu -44896 NM_001300959 83637 Hs.77978 NM_031449 ENSG00000122515 ZMIZ2 NET27|TRAFIP20|ZIMP7|hZIMP7 zinc finger MIZ-type containing 2 protein-coding 149-42 chr2 73905440 73905931 + 0.5 NA intron (NM_001615, intron 3 of 8) L1ME4a|LINE|L1 12677 NM_001615 72 Hs.516105 NM_001615 ENSG00000163017 ACTG2 ACT|ACTA3|ACTE|ACTL3|ACTSG|VSCM actin gamma 2, smooth muscle protein-coding 166.5-71 chr6 13871872 13872536 + 0.5 NA Intergenic LTR12C|LTR|ERV1 -52242 NM_001165034 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 157-23 chr11 92470633 92471159 + 0.5 NA intron (NM_001008781, intron 1 of 24) intron (NM_001008781, intron 1 of 24) 118800 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 155-48 chr2 236801293 236801809 + 0.5 NA Intergenic Intergenic 231726 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 156.75-73 chr5 29544523 29544950 + 0.5 NA Intergenic Intergenic -148760 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 160.75-15 chr11 32600967 32601405 + 0.5 NA TTS (NM_001008391) TTS (NM_001008391) 17355 NM_006360 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 194-14 chr11 97669604 97670317 + 0.5 NA Intergenic AluSz|SINE|Alu 1161535 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 185.75-76 chr7 88701435 88702146 + 0.5 NA Intergenic L1PB4|LINE|L1 -57910 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 162.75-52 chr4 37101595 37102125 + 0.5 NA Intergenic MIR3|SINE|MIR 100081 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 176.25-60 chr8 16401513 16402134 + 0.5 NA Intergenic Intergenic -209032 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 158-95 chr9 29301799 29302269 + 0.5 NA Intergenic L1PA10|LINE|L1 -88433 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 173.25-70 chr7 91898938 91899593 + 0.5 NA Intergenic (TCA)n|Simple_repeat|Simple_repeat -18563 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 173-26 chr13 68469269 68469867 + 0.5 NA Intergenic Intergenic 415757 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 155.75-18 chr11 33983877 33984496 + 0.5 NA Intergenic Intergenic -67545 NM_203364 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 146-46 chr2 213641765 213642108 + 0.5 NA intron (NR_047660, intron 9 of 14) THE1D|LTR|ERVL-MaLR -116131 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 176-32 chr2 88393651 88394334 + 0.5 NA Intergenic AluSx1|SINE|Alu 58701 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 166-26 chr14_GL000225v1_random 117361 117884 + 0.5 NA NA BSR/Beta|Satellite|Satellite NA NA 203.75-6 chr15 41725117 41725562 + 0.5 NA intron (NM_001164273, intron 9 of 23) AluJr4|SINE|Alu 33754 NR_030356 693211 NR_030356 ENSG00000207766 MIR626 MIRN626|hsa-mir-626 microRNA 626 ncRNA 198.25-14 chr15 80816019 80816596 + 0.5 NA intron (NM_018689, intron 1 of 28) intron (NM_018689, intron 1 of 28) 25766 NR_030393 693132 NR_030393 ENSG00000208003 MIR549A MIR549|MIRN549|hsa-mir-549|hsa-mir-549a|mir-549a microRNA 549a ncRNA 169.5-87 chr7 95758155 95758564 + 0.5 NA Intergenic Intergenic -14147 NM_001278421 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 159.75-61 chr3 78049325 78049857 + 0.5 NA promoter-TSS (NR_146636) promoter-TSS (NR_146636) -628 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 153.25-23 chr11 36180532 36180898 + 0.5 NA intron (NM_001304263, intron 3 of 4) L2a|LINE|L2 -102814 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 204-39 chr7 102299254 102299951 + 0.5 NA intron (NM_001359229, intron 1 of 8) L2a|LINE|L2 6499 NR_036245 100422858 NR_036245 ENSG00000264675 MIR4285 - microRNA 4285 ncRNA 154.75-103 chr8 138829719 138830307 + 0.5 NA intron (NM_152888, intron 5 of 64) (TA)n|Simple_repeat|Simple_repeat 84028 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 159.75-106 chr9 117821275 117821848 + 0.5 NA Intergenic Intergenic 117158 NM_003266 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 270.75-16 chr3 23016773 23017564 + 0.5 NA Intergenic Intergenic 185410 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 175.75-33 chr2 76359628 76360169 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -626067 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 180.75-28 chr18 66643326 66643893 + 0.5 NA Intergenic Intergenic -39519 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 161.75-28 chr2 7849187 7849731 + 0.5 NA Intergenic Intergenic 50196 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 145.75-133 chr9 89071893 89072299 + 0.5 NA intron (NM_016848, intron 4 of 11) LTR62|LTR|ERVL 80628 NM_005226 1903 Hs.585118 NM_005226 ENSG00000213694 S1PR3 EDG-3|EDG3|LPB3|S1P3 sphingosine-1-phosphate receptor 3 protein-coding 148.5-75 chr4 125246162 125246633 + 0.5 NA Intergenic L1MD|LINE|L1 -70015 NM_024582 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 216.5-34 chr6 49431558 49432093 + 0.5 NA exon (NM_000255, exon 13 of 13) exon (NM_000255, exon 13 of 13) 31428 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 164-41 chr20 38234307 38234791 + 0.5 NA intron (NR_145960, intron 2 of 10) MER5A1|DNA|hAT-Charlie -25626 NR_104170 149684 Hs.628250 NR_104170 ENSG00000285347 LOC149684 - uncharacterized LOC149684 ncRNA 156.75-78 chr5 121004309 121004894 + 0.5 NA Intergenic Intergenic -317949 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 190.75-53 chr5 24159281 24159744 + 0.5 NA intron (NR_131245, intron 4 of 4) L1MA2|LINE|L1 208164 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 179-54 chr6 99962370 99962791 + 0.5 NA intron (NM_032503, intron 1 of 5) L1MB1|LINE|L1 -31458 NR_038384 728012 Hs.434366 NR_038384 ENSG00000229315 MCHR2-AS1 - MCHR2 antisense RNA 1 ncRNA 174.25-69 chr8 99541175 99541726 + 0.5 NA intron (NM_017890, intron 30 of 61) L1PA8|LINE|L1 -4589 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 157.75-41 chr18 22344470 22344970 + 0.5 NA Intergenic MIR|SINE|MIR 73195 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 152.5-5 chr1 222749100 222749466 + 0.5 NA non-coding (NR_136691, exon 5 of 6) non-coding (NR_136691, exon 5 of 6) 9599 NM_001324080 400823 Hs.697608 NM_207468 ENSG00000197520 FAM177B - family with sequence similarity 177 member B protein-coding 146-88 chr7 104106120 104106544 + 0.5 NA Intergenic Intergenic 101681 NM_002553 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 195.5-52 chr4 161237643 161238183 + 0.5 NA Intergenic Intergenic -784820 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 207.5-40 chr7 10725902 10726605 + 0.5 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) 23577 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 247.75-7 chr13 42926197 42926893 + 0.5 NA intron (NM_033255, intron 6 of 10) intron (NM_033255, intron 6 of 10) -53801 NR_126388 104355147 Hs.633967 NR_126388 LINC00428 - long intergenic non-protein coding RNA 428 ncRNA 169.75-8 chr1 161070335 161070720 + 0.5 NA promoter-TSS (NM_181720) promoter-TSS (NM_181720) -636 NM_001287600 257106 Hs.389374 NM_181720 ENSG00000186517 ARHGAP30 - Rho GTPase activating protein 30 protein-coding 188.75-19 chr14 63753994 63754486 + 0.5 NA Intergenic AluSz6|SINE|Alu -26175 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 148-52 chr2 146378751 146379207 + 0.5 NA Intergenic Intergenic -208078 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 168.75-8 chr10 18393468 18394014 + 0.5 NA intron (NM_201590, intron 1 of 12) intron (NM_201590, intron 1 of 12) -6834 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 194.5-49 chr5 117768885 117769593 + 0.5 NA intron (NR_104997, intron 1 of 2) L1PBa|LINE|L1 38878 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 208.25-32 chr6 120963113 120963666 + 0.5 NA Intergenic Intergenic 371091 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 183.5-24 chr17 33733455 33733889 + 0.5 NA intron (NM_001094, intron 1 of 9) MIRc|SINE|MIR -199912 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 188.75-43 chr3 175170206 175170698 + 0.5 NA intron (NM_207015, intron 2 of 13) (TA)n|Simple_repeat|Simple_repeat -55210 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 170.5-47 chr3 23342042 23342452 + 0.5 NA intron (NM_001370225, intron 3 of 5) AluJr|SINE|Alu 138920 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 186-13 chr15 77421740 77422293 + 0.5 NA intron (NM_001304505, intron 1 of 9) intron (NM_001304505, intron 1 of 9) 1128 NM_001304504 10363 Hs.69594 NM_018200 ENSG00000140382 HMG20A HMGX1|HMGXB1 high mobility group 20A protein-coding 161.5-25 chr11 105335189 105335763 + 0.5 NA Intergenic L1PA11|LINE|L1 -195707 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 158.25-97 chr6 125204666 125205092 + 0.5 NA intron (NM_001318907, intron 1 of 4) L2c|LINE|L2 1168 NM_001318907 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 157.25-57 chr2 207965095 207965521 + 0.5 NA intron (NM_001080475, intron 3 of 7) intron (NM_001080475, intron 3 of 7) 60219 NM_001080475 389072 Hs.159188 NM_001080475 ENSG00000178385 PLEKHM3 DAPR|PLEKHM1L pleckstrin homology domain containing M3 protein-coding 166-18 chr12 23498160 23498721 + 0.5 NA Intergenic LTR8|LTR|ERV1 86146 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 192.5-27 chr2 225406264 225406832 + 0.5 NA intron (NM_001371273, intron 2 of 7) intron (NM_001371273, intron 2 of 7) 5662 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 171.75 chr1 42864991 42865508 + 0.5 NA intron (NR_104171, intron 1 of 3) L1M2|LINE|L1 7627 NR_104171 339539 Hs.434301 NR_104171 LOC339539 - uncharacterized LOC339539 ncRNA 147.25-26 chr12 16099988 16100545 + 0.5 NA Intergenic MLT1J1|LTR|ERVL-MaLR 177419 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 205.5-48 chr9 33138839 33139499 + 0.5 NA intron (NM_001497, intron 1 of 5) L2b|LINE|L2 -27779 NR_108110 101929639 Hs.545818 NR_108108 ENSG00000233554 B4GALT1-AS1 - B4GALT1 antisense RNA 1 ncRNA 189.5-53 chr5 65266753 65267368 + 0.5 NA intron (NR_135689, intron 13 of 25) intron (NR_135689, intron 13 of 25) 214860 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 153.25-71 chr20 53193147 53193687 + 0.5 NA intron (NM_001193421, intron 1 of 2) intron (NM_001193421, intron 1 of 2) 8134 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 164.75-76 chr6 125513489 125513953 + 0.5 NA Intergenic Intergenic -160632 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 150-83 chr8 9176954 9177491 + 0.5 NA Intergenic Intergenic -11777 NR_125431 101929128 NR_125431 ENSG00000248538 LOC101929128 - uncharacterized LOC101929128 ncRNA 239.75-12 chr18 13429769 13430578 + 0.5 NA intron (NM_181482, intron 3 of 5) intron (NM_181482, intron 3 of 5) -2639 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 174.5-24 chr14 38524640 38525059 + 0.5 NA Intergenic Intergenic -268756 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 159.75-41 chr17 73249773 73250241 + 0.5 NA intron (NM_001129885, intron 5 of 5) intron (NM_001129885, intron 5 of 5) 11873 NM_001129885 642843 Hs.534707 NM_001129885 ENSG00000187959 CPSF4L - cleavage and polyadenylation specific factor 4 like protein-coding 183.75-62 chr3 160288962 160289416 + 0.5 NA intron (NM_001190242, intron 11 of 18) L1PREC2|LINE|L1 63553 NM_001168214 401097 Hs.729755 NM_001168214 ENSG00000180044 C3orf80 - chromosome 3 open reading frame 80 protein-coding 176.5-82 chr7 122553237 122553818 + 0.5 NA intron (NM_001167940, intron 8 of 29) L4_A_Mam|LINE|RTE-X 145590 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 155.75-32 chr14 54627790 54628259 + 0.5 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 60412 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 203.5-35 chr21 29601261 29601877 + 0.5 NA intron (NM_000830, intron 7 of 16) intron (NM_000830, intron 7 of 16) 5529 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 198.5-10 chr11 18542421 18543165 + 0.5 NA intron (NM_001040697, intron 9 of 11) intron (NM_001040697, intron 9 of 11) -15851 NM_006292 7251 Hs.523512 NM_006292 ENSG00000074319 TSG101 TSG10|VPS23 tumor susceptibility 101 protein-coding 149.25-88 chr6 73578885 73579305 + 0.5 NA Intergenic Intergenic -58063 NM_001402 1915 Hs.535192 NM_001402 ENSG00000156508 EEF1A1 CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1 eukaryotic translation elongation factor 1 alpha 1 protein-coding 149.25-64 chr3 81458119 81458487 + 0.5 NA Intergenic Intergenic 303342 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 222.75-33 chr5 116204358 116204912 + 0.5 NA intron (NM_001308080, intron 5 of 6) intron (NM_001308080, intron 5 of 6) -51108 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 162-59 chr4 129095544 129096070 + 0.5 NA promoter-TSS (NM_001099783) promoter-TSS (NM_001099783) -345 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 165-42 chr2 132998063 132998513 + 0.5 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 82731 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 186.75-86 chrX 12769393 12769824 + 0.5 NA Intergenic Intergenic -21747 NM_001039091 5634 Hs.654581 NM_002765 ENSG00000101911 PRPS2 PRSII phosphoribosyl pyrophosphate synthetase 2 protein-coding 235.5-20 chr3 81022148 81022972 + 0.5 NA intron (NR_132411, intron 1 of 1) LTR85b|LTR|Gypsy? 28692 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 167.25-46 chr3 57168060 57168644 + 0.5 NA intron (NM_001318864, intron 2 of 13) intron (NM_001318864, intron 2 of 13) 1965 NM_001318864 54756 Hs.150725 NM_017563 ENSG00000144730 IL17RD HH18|IL-17RD|IL17RLM|SEF interleukin 17 receptor D protein-coding 167.75-20 chr12 74895100 74895575 + 0.5 NA Intergenic Intergenic 314411 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 196.25-5 chr11 40929629 40930168 + 0.5 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) 529738 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 148-46 chr2 20038606 20039091 + 0.5 NA intron (NM_014713, intron 2 of 6) intron (NM_014713, intron 2 of 6) 12780 NM_014713 9741 Hs.467807 NM_014713 ENSG00000068697 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 218.25-39 chr6 130767050 130767713 + 0.5 NA Intergenic AluYc|SINE|Alu -60024 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 154.75-60 chr22 48367987 48368572 + 0.5 NA Intergenic L1M5|LINE|L1 93915 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 161-3 chr1 61335928 61336429 + 0.5 NA intron (NM_001134673, intron 4 of 10) intron (NM_001134673, intron 4 of 10) -82660 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 207-10 chr13 65089983 65090605 + 0.5 NA Intergenic Intergenic -775753 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 166-74 chr8 19722857 19723385 + 0.5 NA intron (NM_001354475, intron 1 of 9) intron (NM_001354475, intron 1 of 9) 33962 NM_001354490 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 151.5-20 chr11 108049775 108050284 + 0.5 NA exon (NM_003478, exon 4 of 19) exon (NM_003478, exon 4 of 19) 41131 NM_003478 8065 Hs.440320 NM_003478 ENSG00000166266 CUL5 CUL-5|VACM-1|VACM1 cullin 5 protein-coding 194.75-18 chr2 24665023 24665638 + 0.5 NA intron (NM_001362950, intron 5 of 23) intron (NM_001362950, intron 5 of 23) 80853 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 205-17 chr14 85823083 85823720 + 0.5 NA Intergenic Intergenic -111277 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 176.5-44 chr2 177649117 177649687 + 0.5 NA intron (NM_001077197, intron 20 of 20) L1ME4b|LINE|L1 -23920 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 166.75-43 chr2 146057157 146057670 + 0.5 NA Intergenic L1MC3|LINE|L1 -529644 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 150.25-49 chr2 76163905 76164378 + 0.5 NA Intergenic L1ME3A|LINE|L1 -453226 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 175.75-15 chr13 58357142 58357538 + 0.5 NA Intergenic L2|LINE|L2 -124223 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 146.5-51 chr2 81852533 81852916 + 0.5 NA Intergenic Intergenic -385778 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 159.5-30 chr17 62735869 62736457 + 0.5 NA exon (NM_001100875, exon 6 of 11) exon (NM_001100875, exon 6 of 11) 29957 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 160-52 chr3 69382441 69383002 + 0.5 NA intron (NM_015123, intron 1 of 22) intron (NM_015123, intron 1 of 22) 3367 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 153.75-76 chr6 67855934 67856394 + 0.5 NA Intergenic L1MA1|LINE|L1 -199187 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 166-13 chr11 39524761 39525330 + 0.5 NA Intergenic Intergenic 768085 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 190-37 chr3 113335908 113336540 + 0.5 NA intron (NM_001164496, intron 24 of 34) L1MDa|LINE|L1 -67774 NR_046728 100874029 Hs.599665 NR_046728 ENSG00000243849 CFAP44-AS1 WDR52-AS1 CFAP44 antisense RNA 1 ncRNA 184.75-31 chr15 71050005 71050415 + 0.5 NA TTS (NM_001284357) TTS (NM_001284357) -91239 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 222.75-6 chr11 22476040 22476859 + 0.5 NA intron (NR_120583, intron 2 of 3) intron (NR_120583, intron 2 of 3) 15570 NR_120583 102723378 Hs.374255 NR_120583 ENSG00000255323 LINC01495 - long intergenic non-protein coding RNA 1495 ncRNA 157.25-114 chrX 103033909 103034400 + 0.5 NA Intergenic Intergenic 30017 NM_018476 55859 Hs.334370 NM_018476 ENSG00000133169 BEX1 BEX2|HBEX2|HGR74-h brain expressed X-linked 1 protein-coding 162-76 chr8 51941838 51942301 + 0.5 NA Intergenic Intergenic -42883 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 168.5-13 chr10 78357553 78358101 + 0.5 NA Intergenic Intergenic 90485 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 157.5-106 chr8 109460946 109461423 + 0.5 NA intron (NM_177531, intron 47 of 77) intron (NM_177531, intron 47 of 77) -78516 NM_198120 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 234-3 chr11 13345601 13346416 + 0.5 NA intron (NM_001351821, intron 3 of 19) MER81|DNA|hAT-Blackjack 68281 NR_147788 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 164.25-6 chr1 101093696 101094080 + 0.5 NA Intergenic Intergenic 68042 NR_109849 102606465 Hs.593669 NR_109849 LOC102606465 - uncharacterized LOC102606465 ncRNA 173-31 chr14 66797340 66797812 + 0.5 NA intron (NM_001024218, intron 3 of 21) L1MA2|LINE|L1 290169 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 254.75-5 chr1 246198074 246198840 + 0.5 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 218955 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 165.25-8 chr10 88293799 88294309 + 0.5 NA intron (NM_001031709, intron 6 of 6) intron (NM_001031709, intron 6 of 6) 289264 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 180.5-58 chr5 18497788 18498383 + 0.5 NA Intergenic L1MDa|LINE|L1 690811 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 253.5-21 chr5 45261502 45262165 + 0.5 NA 3' UTR (NM_021072, exon 8 of 8) 3' UTR (NM_021072, exon 8 of 8) 434547 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 159.25-7 chr11 23708470 23708941 + 0.5 NA Intergenic L1M1|LINE|L1 -289515 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 198.75-31 chr2 100706213 100706684 + 0.5 NA Intergenic Intergenic 102709 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 153.5-36 chr15 62879453 62879863 + 0.5 NA Intergenic Intergenic 55701 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 220-8 chr16 86410441 86411165 + 0.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR -65124 NR_024406 732275 Hs.558087 NR_024406 ENSG00000168367 LINC00917 - long intergenic non-protein coding RNA 917 ncRNA 243.5-20 chr5 82734496 82735439 + 0.5 NA Intergenic Intergenic -105188 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 218-18 chr3 179310840 179311364 + 0.5 NA Intergenic L1MDa|LINE|L1 -11929 NM_001303426 51193 Hs.632578 NM_016331 ENSG00000121864 ZNF639 ANC-2H01|ANC_2H01|ZASC1 zinc finger protein 639 protein-coding 196.5-57 chr8 46430383 46430887 + 0.5 NA Intergenic GSAT|Satellite|centr 187008 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 145.75-7 chr1 219306814 219307267 + 0.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 132071 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 197.5-37 chr2 165602335 165602881 + 0.5 NA intron (NM_024969, intron 2 of 4) intron (NM_024969, intron 2 of 4) 30272 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 198.75-52 chr8 139819856 139820432 + 0.5 NA intron (NM_001160372, intron 21 of 22) L1ME3G|LINE|L1 -117021 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 181.75-5 chr1 113222508 113223149 + 0.5 NA Intergenic Intergenic -16575 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 228-21 chr4 128712514 128713227 + 0.5 NA Intergenic Intergenic -96830 NM_024900 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 153.75-79 chr6 134254401 134254826 + 0.5 NA intron (NM_001143676, intron 2 of 13) L1ME3G|LINE|L1 63445 NM_001143676 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 163.5-31 chr14 68677718 68678345 + 0.5 NA intron (NM_001321818, intron 10 of 10) MIRb|SINE|MIR -49244 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 168.5-54 chr2 114277705 114278254 + 0.5 NA Intergenic Intergenic -164662 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 157.75-76 chr4 91275145 91275515 + 0.5 NA intron (NM_001145065, intron 10 of 10) (TTTGTT)n|Simple_repeat|Simple_repeat 1001972 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 176-41 chr21 29250030 29250683 + 0.5 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) -48566 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 165-92 chr9 73856185 73856740 + 0.5 NA Intergenic Charlie21a|DNA|hAT-Charlie -515069 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 149-108 chrX 67260108 67260523 + 0.5 NA Intergenic Intergenic -283706 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 187.5-7 chr10 93126502 93127102 + 0.5 NA Intergenic Intergenic 52909 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 166.25-21 chr12 51537899 51538512 + 0.5 NA Intergenic Intergenic -53028 NM_001330260 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 155-31 chr14 63362773 63363290 + 0.5 NA Intergenic Intergenic -44096 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 216.75-37 chr9 36226662 36227233 + 0.5 NA intron (NM_005476, intron 7 of 11) intron (NM_005476, intron 7 of 11) 31501 NM_005476 10020 Hs.5920 NM_005476 ENSG00000159921 GNE DMRV|GLCNE|IBM2|NM|Uae1 glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase protein-coding 189-27 chr2 39766867 39767435 + 0.5 NA intron (NR_135664, intron 5 of 11) intron (NR_135664, intron 5 of 11) 12107 NM_025264 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 165.5-44 chr2 21650897 21651457 + 0.5 NA Intergenic Intergenic 59475 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 150.75-80 chr6 24878205 24878606 + 0.5 NA intron (NM_001286446, intron 1 of 13) intron (NM_001286446, intron 1 of 13) -1040 NM_001286447 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 162-86 chrX 31936887 31937518 + 0.5 NA intron (NM_000109, intron 45 of 78) intron (NM_000109, intron 45 of 78) 218267 NM_004020 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 163-2 chr1 75748576 75749224 + 0.5 NA intron (NM_001286042, intron 7 of 10) intron (NM_001286042, intron 7 of 10) -3887 NR_130749 1744 Hs.525459 NR_130749 DLSTP1 DLSTP dihydrolipoamide S-succinyltransferase pseudogene 1 pseudo 194.75-3 chr1 240382982 240383665 + 0.5 NA intron (NM_020066, intron 14 of 17) L1PB4|LINE|L1 228832 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 163.75-60 chr5 80502793 80503295 + 0.5 NA intron (NM_205548, intron 2 of 5) L1MB7|LINE|L1 14944 NM_205548 167555 Hs.338182 NM_205548 ENSG00000152380 FAM151B UNQ9217 family with sequence similarity 151 member B protein-coding 242.5-27 chr4 71385546 71386379 + 0.5 NA intron (NM_003759, intron 3 of 22) HAL1|LINE|L1 46909 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 157-101 chr8 118338601 118339026 + 0.5 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -226994 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 148-28 chr14 53457906 53458383 + 0.5 NA Intergenic Intergenic 304790 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 160.25-10 chr10 59555128 59555545 + 0.5 NA Intergenic Intergenic 154555 NM_194298 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 159.25-18 chr14 47096521 47097093 + 0.5 NA intron (NM_001113498, intron 6 of 16) intron (NM_001113498, intron 6 of 16) 246439 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 215.75-22 chr3 126906872 126907546 + 0.5 NA intron (NM_032343, intron 5 of 7) intron (NM_032343, intron 5 of 7) -81385 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 184-55 chr8 40564326 40565046 + 0.5 NA intron (NM_024645, intron 6 of 6) intron (NM_024645, intron 6 of 6) -221323 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 222.25-6 chr10 74453554 74454240 + 0.5 NA intron (NM_001369124, intron 6 of 9) intron (NM_001369124, intron 6 of 9) 75427 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 252-14 chr9 699332 699982 + 0.5 NA intron (NM_001354337, intron 1 of 10) intron (NM_001354337, intron 1 of 10) 6318 NM_001354340 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 156-56 chr3 163063732 163064081 + 0.5 NA Intergenic L1PREC2|LINE|L1 239395 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 161.75-41 chr22 41146821 41147285 + 0.5 NA intron (NM_001429, intron 11 of 30) AluSx|SINE|Alu 50448 NR_110514 101927279 Hs.517517 NR_110514 EP300-AS1 - EP300 antisense RNA 1 ncRNA 178-37 chr2 196732798 196733330 + 0.5 NA TTS (NM_001353340) TTS (NM_001353340) 19526 NM_001353340 284992 Hs.132519 NM_173466 ENSG00000144395 CCDC150 - coiled-coil domain containing 150 protein-coding 222-13 chr2 52258590 52259448 + 0.5 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -111629 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 194.75-10 chr12 44106463 44106993 + 0.5 NA intron (NM_001286212, intron 3 of 6) intron (NM_001286212, intron 3 of 6) 270647 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 146.5-76 chr4 64258483 64258916 + 0.5 NA Intergenic L2c|LINE|L2 150751 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 164-65 chr5 103060295 103060829 + 0.5 NA Intergenic Intergenic 59576 NM_017676 54826 Hs.24088 NM_017676 ENSG00000145723 GIN1 GIN-1|TGIN1|ZH2C2 gypsy retrotransposon integrase 1 protein-coding 184.75-54 chr4 61509267 61509981 + 0.5 NA intron (NM_001322246, intron 3 of 25) L1PA16|LINE|L1 307452 NM_001371342 173.25-57 chr4 87519175 87519641 + 0.5 NA intron (NM_001128310, intron 1 of 11) L4_A_Mam|LINE|RTE-X 10095 NM_001291977 8404 Hs.62886 NM_004684 ENSG00000152583 SPARCL1 MAST 9|MAST9|PIG33|SC1 SPARC like 1 protein-coding 160.75-67 chr2 153555995 153556410 + 0.5 NA Intergenic Intergenic -77440 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 210.25-28 chr4 31991668 31992409 + 0.5 NA Intergenic Intergenic -5341 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 163.5-92 chr5 85109745 85110158 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL -725071 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 187-37 chr4 87289162 87289816 + 0.5 NA Intergenic Intergenic 11094 NR_049891 100847027 NR_049891 ENSG00000263981 MIR5705 - microRNA 5705 ncRNA 161.25-59 chr5 112149989 112150531 + 0.5 NA intron (NM_001347887, intron 22 of 23) L1MEd|LINE|L1 -10266 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 195.25-60 chr8 115622668 115623352 + 0.5 NA intron (NM_001330599, intron 1 of 5) intron (NM_001330599, intron 1 of 5) 45003 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 169.5-50 chr2 226746624 226747207 + 0.5 NA intron (NM_005544, intron 1 of 1) AluSx|SINE|Alu 51875 NM_005544 3667 Hs.471508 NM_005544 ENSG00000169047 IRS1 HIRS-1 insulin receptor substrate 1 protein-coding 171.5 chr1 14484397 14485069 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -64760 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 189-56 chr7 5437347 5438074 + 0.5 NA Intergenic MLT1F1|LTR|ERVL-MaLR -8783 NM_001354886 100129484 Hs.147507 NM_001354886 LOC100129484 - uncharacterized LOC100129484 protein-coding 152.25-65 chr3 102026770 102027291 + 0.5 NA Intergenic MLT1E3|LTR|ERVL-MaLR 86171 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 146.75-54 chr2 108149445 108149871 + 0.5 NA Intergenic Intergenic 68183 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 149.75-34 chr18 68361150 68361523 + 0.5 NA Intergenic MER41-int|LTR|ERV1 353772 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 209.25-33 chr4 28924263 28924857 + 0.5 NA Intergenic AluY|SINE|Alu -72224 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 173.75-23 chr14 36263268 36263955 + 0.5 NA Intergenic Intergenic 57026 NM_016586 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 147.25-76 chr5 136218416 136218917 + 0.5 NA intron (NM_020389, intron 10 of 11) intron (NM_020389, intron 10 of 11) -7989 NR_133682 106478968 Hs.637713 NR_133682 ENSG00000250947 TRPC7-AS2 CTB-28J9.2 TRPC7 antisense RNA 2 ncRNA 275-8 chr2 73534664 73535570 + 0.5 NA intron (NM_015120, intron 12 of 22) intron (NM_015120, intron 12 of 22) 78014 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 207-14 chr18 10132275 10133053 + 0.5 NA Intergenic Intergenic 218648 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 163.25-4 chr1 84981645 84982238 + 0.5 NA intron (NM_001330647, intron 1 of 14) L1MA2|LINE|L1 15172 NM_001330647 255231 Hs.591446 NM_153259 ENSG00000153898 MCOLN2 TRP-ML2|TRPML2 mucolipin 2 protein-coding 193-40 chr4 152593606 152594298 + 0.5 NA Intergenic Intergenic 57524 NR_039658 100616193 NR_039658 ENSG00000283792 MIR4453 - microRNA 4453 ncRNA 181.75-35 chr2 212471851 212472475 + 0.5 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) -45803 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 171.75-51 chr3 130358495 130358959 + 0.5 NA intron (NM_001278298, intron 1 of 40) L1ME3G|LINE|L1 13211 NR_022012 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 185-62 chr5 163079407 163079851 + 0.5 NA Intergenic L1ME1|LINE|L1 -357942 NM_001364019 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 204.75-36 chr3 164191005 164191449 + 0.5 NA Intergenic Intergenic -19671 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 162.25-49 chr22 37312044 37312551 + 0.5 NA intron (NM_001318024, intron 12 of 12) intron (NM_001318024, intron 12 of 12) 29789 NM_001318024 27128 Hs.170944 NM_013385 ENSG00000100055 CYTH4 CYT4|DJ63G5.1|PSCD4|cytohesin-4 cytohesin 4 protein-coding 186.75-83 chr9 30173465 30174006 + 0.5 NA Intergenic Intergenic 234719 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 153.5-40 chr17 67240849 67241327 + 0.5 NA intron (NM_001330447, intron 2 of 32) intron (NM_001330447, intron 2 of 32) -3688 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 152.25-21 chr13 23496635 23497133 + 0.5 NA Intergenic Intergenic 27372 NR_038995 100506697 Hs.50118 NR_038995 ENSG00000232977 LINC00327 NCRNA00327 long intergenic non-protein coding RNA 327 ncRNA 151-37 chr2 35380346 35380851 + 0.5 NA Intergenic MIRb|SINE|MIR -90807 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 171.25-10 chr11 82087238 82087725 + 0.5 NA intron (NR_120571, intron 5 of 7) L1MC4|LINE|L1 -196645 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 167.75-100 chr9 9236336 9236756 + 0.5 NA intron (NM_002839, intron 9 of 45) MER31-int|LTR|ERV1 378528 NR_121599 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 164.5-50 chr22 25693192 25693757 + 0.5 NA intron (NM_001362778, intron 11 of 19) intron (NM_001362778, intron 11 of 19) -48714 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 165.5-28 chr12 80632692 80633182 + 0.5 NA intron (NM_001145026, intron 34 of 44) intron (NM_001145026, intron 34 of 44) -74697 NM_002469 4618 Hs.35937 NM_002469 ENSG00000111046 MYF6 CNM3|MRF4|bHLHc4|myf-6 myogenic factor 6 protein-coding 196.5-18 chr16 17488273 17488816 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR -17584 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 151-9 chr10 85688744 85689157 + 0.5 NA intron (NM_017551, intron 12 of 15) L3|LINE|CR1 111219 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 231-22 chr5 126929030 126929605 + 0.5 NA intron (NM_178450, intron 1 of 4) L1MC5a|LINE|L1 101241 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 154.5-54 chr20 52390728 52391080 + 0.5 NA Intergenic Intergenic -198919 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 241 chr1 64655386 64656332 + 0.5 NA intron (NM_020925, intron 12 of 26) intron (NM_020925, intron 12 of 26) 76012 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 155.75-96 chr7 125021620 125021986 + 0.5 NA intron (NR_125718, intron 4 of 10) THE1B-int|LTR|ERVL-MaLR -91820 NM_001042594 25913 Hs.31968 NM_015450 ENSG00000128513 POT1 CMM10|GLM9|HPOT1 protection of telomeres 1 protein-coding 163.25-35 chr2 14990274 14990688 + 0.5 NA Intergenic Intergenic 357764 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 159.25-34 chr2 61721061 61721570 + 0.5 NA Intergenic Intergenic 132745 NM_032180 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 197.25-34 chr3 16404818 16405461 + 0.5 NA intron (NM_015150, intron 4 of 9) intron (NM_015150, intron 4 of 9) 108560 NM_015150 23180 Hs.98910 NM_015150 ENSG00000131378 RFTN1 MIG2|PIB10|PIG9|RAFTLIN raftlin, lipid raft linker 1 protein-coding 191.5-42 chr4 135587786 135588193 + 0.5 NA Intergenic L2a|LINE|L2 300104 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 148.25-69 chr5 45888727 45889153 + 0.5 NA Intergenic L2|LINE|L2 -192560 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 147-57 chr20 59138817 59139321 + 0.5 NA Intergenic Intergenic -51951 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 172.25-19 chr12 90360244 90360864 + 0.5 NA Intergenic Intergenic 67236 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 173.75-7 chr10 16309850 16310341 + 0.5 NA Intergenic L2a|LINE|L2 -126848 NM_030664 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 183.25-38 chr2 190980400 190981055 + 0.5 NA intron (NM_007315, intron 18 of 24) intron (NM_007315, intron 18 of 24) 33523 NM_139266 6772 Hs.642990 NM_007315 ENSG00000115415 STAT1 CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91 signal transducer and activator of transcription 1 protein-coding 181.25-10 chr11 112899826 112900286 + 0.5 NA Intergenic Intergenic -61364 NM_181351 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 154-104 chr8 103760993 103761573 + 0.5 NA intron (NM_001348496, intron 3 of 23) intron (NM_001348496, intron 3 of 23) -57937 NM_001348503 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 166.75-46 chr20 12417910 12418563 + 0.5 NA Intergenic HAL1ME|LINE|L1 500343 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 234.75-31 chrX 4298798 4299655 + 0.5 NA Intergenic Intergenic 334346 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 182-16 chr13 65511458 65512147 + 0.5 NA Intergenic Intergenic -354245 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 152.25-19 chr12 13754173 13754680 + 0.5 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 225930 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 176.75-26 chr17 48629847 48630483 + 0.5 NA Intergenic Intergenic 2394 NR_029582 406972 NR_029582 ENSG00000210741 MIR196A1 MIRN196-1|MIRN196A1|mir-196a-1 microRNA 196a-1 ncRNA 194.25-8 chr12 15986581 15987124 + 0.5 NA intron (NM_015954, intron 6 of 8) L1MEf|LINE|L1 75520 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 182.75-26 chr14 74090563 74091194 + 0.5 NA intron (NM_001024674, intron 1 of 5) L2|LINE|L2 5925 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 226-25 chr6 71813338 71813870 + 0.5 NA Intergenic L1M2|LINE|L1 -73099 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 156-73 chr5 20980605 20981195 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -365365 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 208.75-33 chr7 5710651 5711289 + 0.5 NA TTS (NR_106934) TTS (NR_106934) 940 NR_106934 102466203 NR_106934 ENSG00000283419 MIR6874 hsa-mir-6874 microRNA 6874 ncRNA 193.75-15 chr11 110424013 110424743 + 0.5 NA Intergenic PRIMA4-int|LTR|ERV1 -5570 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 155-83 chr5 145324821 145325411 + 0.5 NA Intergenic Intergenic 510226 NM_138492 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 259.75-3 chr10 11209381 11210295 + 0.5 NA intron (NM_001326339, intron 2 of 11) intron (NM_001326339, intron 2 of 11) 44808 NM_001025076 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 178-9 chr10 92700590 92701046 + 0.5 NA Intergenic Intergenic 10863 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 149.25-103 chr8 17690138 17690570 + 0.5 NA intron (NM_001001931, intron 3 of 11) L1P4|LINE|L1 7383 NM_020749 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 145.75-93 chr5 13611504 13611870 + 0.5 NA Intergenic Intergenic 332793 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 175.5-79 chr5 149203658 149204092 + 0.5 NA intron (NM_001370418, intron 4 of 18) MIR|SINE|MIR 62144 NM_001370417 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 149.5-76 chr5 155264950 155265411 + 0.5 NA Intergenic Intergenic 251425 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 163-62 chr4 170461461 170461905 + 0.5 NA Intergenic L1P4|LINE|L1 235092 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 212.75-28 chr5 107954749 107955277 + 0.5 NA intron (NM_001163315, intron 7 of 8) intron (NM_001163315, intron 7 of 8) -284076 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 150.5-19 chr10 51525032 51525531 + 0.5 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 174314 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 179.25-74 chr8 113973028 113973548 + 0.5 NA Intergenic Intergenic -536349 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 166-43 chr2 215546613 215547168 + 0.5 NA Intergenic Intergenic 93183 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 178.75-32 chr2 188402635 188403344 + 0.5 NA intron (NM_016315, intron 2 of 11) MIR|SINE|MIR 105497 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 178.25-49 chr4 134862153 134862650 + 0.5 NA Intergenic Intergenic 261158 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 184-51 chr6 166622587 166623205 + 0.5 NA intron (NM_001006932, intron 2 of 21) L2c|LINE|L2 4355 NM_021135 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 167.5-74 chr5 30287408 30287864 + 0.5 NA Intergenic L1M2|LINE|L1 407076 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 148-33 chr15 75506072 75506512 + 0.5 NA intron (NM_002833, intron 6 of 12) intron (NM_002833, intron 6 of 12) -50477 NM_001145357 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 179.25-43 chr20 40043227 40043631 + 0.5 NA Intergenic MER2|DNA|TcMar-Tigger 38968 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 173.25-43 chr20 37724116 37724548 + 0.5 NA intron (NM_030877, intron 1 of 15) L3|LINE|CR1 30302 NM_030877 56259 Hs.472667 NM_030877 ENSG00000132792 CTNNBL1 C20orf33|NAP|P14L|PP8304|dJ633O20.1 catenin beta like 1 protein-coding 168-53 chr4 45856246 45856836 + 0.5 NA Intergenic L1PB1|LINE|L1 267513 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 196-7 chr10 67628273 67628790 + 0.5 NA intron (NM_001127384, intron 2 of 17) MER57A-int|LTR|ERV1 37129 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 147-4 chr1 106726129 106726672 + 0.5 NA Intergenic L1MA2|LINE|L1 -91839 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 214.5-38 chr4 185459744 185460319 + 0.5 NA exon (NM_152775, exon 6 of 7) exon (NM_152775, exon 6 of 7) -11400 NR_133944 105377590 Hs.563183 NR_133944 ENSG00000249679 LOC105377590 - uncharacterized LOC105377590 ncRNA 183.25-54 chr4 61407449 61407835 + 0.5 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 205470 NM_001371342 196.75-7 chr10 57414036 57414735 + 0.5 NA Intergenic L1MCb|LINE|L1 -109826 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 185.25-68 chr5 90722424 90722916 + 0.5 NA intron (NR_003149, intron 45 of 89) AluSp|SINE|Alu 163873 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 200.5-52 chr6 64141368 64142045 + 0.5 NA intron (NM_001292009, intron 31 of 43) intron (NM_001292009, intron 31 of 43) 334870 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 167.75-82 chr7 2977734 2978133 + 0.5 NA intron (NM_032415, intron 1 of 24) AluSc8|SINE|Alu 65934 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 177.5-6 chr1 193154714 193155095 + 0.5 NA intron (NM_024529, intron 10 of 16) intron (NM_024529, intron 10 of 16) 18401 NR_031691 100302163 NR_031691 ENSG00000221680 MIR1278 MIRN1278|hsa-mir-1278|mir-1278 microRNA 1278 ncRNA 147-29 chr14 57814319 57814704 + 0.5 NA intron (NR_159373, intron 1 of 10) intron (NR_159373, intron 1 of 10) 50488 NM_001352013 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 179.25-6 chr1 151974444 151974968 + 0.5 NA Intergenic L2b|LINE|L2 19153 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 187-25 chr21 21491975 21492571 + 0.5 NA intron (NM_001352592, intron 16 of 18) intron (NM_001352592, intron 16 of 18) 245046 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 178.25-77 chr9 87899929 87900587 + 0.5 NA intron (NR_149022, intron 3 of 3) L1M4c|LINE|L1 17381 NM_178828 286234 Hs.130672 NM_178828 ENSG00000177992 SPATA31E1 C9orf79|FAM75E1 SPATA31 subfamily E member 1 protein-coding 163-60 chr4 81498751 81499268 + 0.5 NA Intergenic Intergenic -27102 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 167.5-13 chr10 76683497 76683968 + 0.5 NA Intergenic Intergenic -204312 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 171-41 chr3 60000138 60000612 + 0.5 NA intron (NM_001320901, intron 5 of 6) MER58A|DNA|hAT-Charlie 80534 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 207.25-54 chr8 140862948 140863765 + 0.5 NA intron (NR_148037, intron 6 of 34) L2c|LINE|L2 -130703 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 148-17 chr10 102753586 102754112 + 0.5 NA intron (NM_001083913, intron 1 of 3) intron (NM_001083913, intron 1 of 3) 9901 NM_001083913 54838 Hs.500897 NM_017787 ENSG00000166272 WBP1L C10orf26|OPA1L|OPAL1 WW domain binding protein 1 like protein-coding 168.5-9 chr10 52259090 52259587 + 0.5 NA intron (NM_001098512, intron 10 of 17) intron (NM_001098512, intron 10 of 17) 54790 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 176.75-9 chr1 209698209 209698853 + 0.5 NA intron (NM_181755, intron 1 of 6) intron (NM_181755, intron 1 of 6) -6315 NM_005525 3290 Hs.195040 NM_005525 ENSG00000117594 HSD11B1 11-DH|11-beta-HSD1|CORTRD2|HDL|HSD11|HSD11B|HSD11L|SDR26C1 hydroxysteroid 11-beta dehydrogenase 1 protein-coding 161-75 chr6 113774264 113774791 + 0.5 NA Intergenic (GT)n|Simple_repeat|Simple_repeat -82818 NM_002356 4082 Hs.519909 NM_002356 ENSG00000277443 MARCKS 80K-L|MACS|PKCSL|PRKCSL myristoylated alanine rich protein kinase C substrate protein-coding 166-44 chr20 1461166 1461630 + 0.5 NA intron (NR_038164, intron 1 of 7) intron (NR_038164, intron 1 of 7) 6294 NM_018839 55968 Hs.12865 NM_016143 ENSG00000088833 NSFL1C P47|UBX1|UBXD10|UBXN2C|dJ776F14.1 NSFL1 cofactor protein-coding 193.75-36 chr2 107709042 107709679 + 0.5 NA Intergenic L1MEf|LINE|L1 -44752 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 164.25-75 chr6 23392990 23393594 + 0.5 NA Intergenic Intergenic -675368 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 153.5-4 chr1 102193010 102193424 + 0.5 NA Intergenic AluJb|SINE|Alu -195983 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 191.75-13 chr11 22988593 22989041 + 0.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR -128343 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 172.5-25 chr14 64293498 64294041 + 0.5 NA intron (NR_073496, intron 1 of 7) intron (NR_073496, intron 1 of 7) 641 NM_001040275 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 228.25 chr10 9217860 9218732 + 0.5 NA intron (NR_120635, intron 4 of 4) MIRb|SINE|MIR -57317 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 196.5-58 chr8 69579820 69580341 + 0.5 NA intron (NR_156414, intron 5 of 20) intron (NR_156414, intron 5 of 20) -12820 NR_132437 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 154.25-70 chr6 68258952 68259318 + 0.5 NA intron (NR_125854, intron 3 of 3) (AT)n|Simple_repeat|Simple_repeat 70764 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 168-61 chr6 96603770 96604310 + 0.5 NA intron (NM_001322467, intron 3 of 6) MIRb|SINE|MIR 40915 NM_001322467 9457 Hs.632608 NM_020482 ENSG00000112214 FHL5 1700027G07Rik|ACT|FHL-5|dJ393D12.2 four and a half LIM domains 5 protein-coding 186-41 chr5 165608344 165608774 + 0.5 NA Intergenic L2a|LINE|L2 1138280 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 153.25-24 chr11 36577690 36578081 + 0.5 NA 3' UTR (NM_000448, exon 2 of 2) 3' UTR (NM_000448, exon 2 of 2) 9872 NM_000448 5896 Hs.73958 NM_000448 ENSG00000166349 RAG1 RAG-1|RNF74 recombination activating 1 protein-coding 202.25-3 chr10 80350752 80351391 + 0.5 NA intron (NM_001270042, intron 1 of 3) L2|LINE|L2 5684 NM_001370155 143241 Hs.407751 NM_138812 ENSG00000170788 DYDC1 DPY30D1 DPY30 domain containing 1 protein-coding 164-33 chr2 43009152 43009724 + 0.5 NA Intergenic Intergenic 30105 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 154-67 chr3 66150210 66150730 + 0.5 NA intron (NM_173471, intron 1 of 10) AluSx1|SINE|Alu 16860 NM_173471 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 350.5-3 chr21 35660145 35661089 + 0.5 NA Intergenic Intergenic -60098 NR_030414 768219 NR_030414 ENSG00000211590 MIR802 MIRN802|hsa-mir-802 microRNA 802 ncRNA 154-70 chr3 143767581 143768109 + 0.5 NA intron (NM_173653, intron 4 of 15) intron (NM_173653, intron 4 of 15) 80623 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 149.5-57 chr3 3725288 3725808 + 0.5 NA intron (NR_149025, intron 5 of 5) Tigger13a|DNA|TcMar-Tigger -73883 NM_020873 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 189.75-80 chr8 133398020 133398714 + 0.5 NA Intergenic Intergenic -101063 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 149.25-91 chr6 125181706 125182278 + 0.5 NA TTS (NR_149043) TTS (NR_149043) 15825 NR_149043 100126584 Hs.640031 NR_149043 LOC100126584 - uncharacterized LOC100126584 ncRNA 247-5 chr11 29201260 29202010 + 0.5 NA Intergenic Intergenic -392778 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 183.5-5 chr10 77044824 77045286 + 0.5 NA intron (NM_001271519, intron 14 of 28) intron (NM_001271519, intron 14 of 28) -95776 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 153.5-106 chr8 87104796 87105328 + 0.5 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 238647 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 173.25-72 chr8 27543651 27544128 + 0.5 NA intron (NM_001979, intron 17 of 18) intron (NM_001979, intron 17 of 18) 52746 NM_001979 2053 Hs.212088 NM_001979 ENSG00000120915 EPHX2 ABHD20|CEH|SEH epoxide hydrolase 2 protein-coding 313.5-8 chr7 113208990 113209799 + 0.5 NA Intergenic Intergenic -90812 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 171.25-56 chr7 79322932 79323285 + 0.5 NA intron (NM_001301128, intron 1 of 20) AluJo|SINE|Alu -129849 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 165.5-76 chr6 42925536 42925974 + 0.5 NA TTS (NM_138296) TTS (NM_138296) -2247 NR_134881 10695 Hs.414099 NM_006586 ENSG00000137161 CNPY3 CAG4A|EIEE60|ERDA5|PRAT4A|TNRC5 canopy FGF signaling regulator 3 protein-coding 165.75-94 chr7 94312488 94313091 + 0.5 NA Intergenic MamRep1151|LTR?|LTR? 79403 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 154.75-61 chr3 28334851 28335253 + 0.5 NA intron (NM_022461, intron 5 of 7) L3|LINE|CR1 -13669 NR_136708 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 202-52 chr8 140165720 140166356 + 0.5 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -65503 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 156.25-55 chr3 48369991 48370374 + 0.5 NA Intergenic MER74B|LTR|ERVL -2037 NM_207102 285231 Hs.288793 NM_207102 ENSG00000164049 FBXW12 FBW12|FBXO12|FBXO35 F-box and WD repeat domain containing 12 protein-coding 190-53 chr5 94017536 94018103 + 0.5 NA intron (NR_028080, intron 3 of 8) THE1A|LTR|ERVL-MaLR 93844 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 166.75-16 chr11 76552848 76553221 + 0.5 NA TTS (NM_001300943) TTS (NM_001300943) 108009 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 148.5-2 chr1 84254777 84255239 + 0.5 NA Intergenic L2b|LINE|L2 -43530 NM_001010971 148418 Hs.591445 NM_001010971 ENSG00000203943 SAMD13 HSD-41|HSD-42 sterile alpha motif domain containing 13 protein-coding 214.25-22 chr4 18931784 18932407 + 0.5 NA Intergenic Intergenic -910220 NM_001365659 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 216.25 chr1 155412046 155412770 + 0.5 NA intron (NM_018489, intron 6 of 27) AluSq2|SINE|Alu -20772 NR_034180 645682 Hs.632482 NR_034180 ENSG00000237872 POU5F1P4 OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1 POU class 5 homeobox 1 pseudogene 4 pseudo 153.5-105 chr8 47585587 47586172 + 0.5 NA intron (NM_001352958, intron 10 of 21) MSTC|LTR|ERVL-MaLR -68209 NM_001352959 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 175.5-80 chr6 38204777 38205222 + 0.5 NA intron (NM_052893, intron 10 of 11) HAL1|LINE|L1 -276597 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 150.75-11 chr10 99114079 99114511 + 0.5 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) 121580 NM_001166246 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 158.5-88 chr5 178725687 178726229 + 0.5 NA intron (NM_005649, intron 3 of 4) AluSc|SINE|Alu 4701 NM_001324339 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 205.5-25 chr20 20747109 20747709 + 0.5 NA Intergenic Intergenic -34765 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 164.25-86 chr8 105605703 105606331 + 0.5 NA intron (NM_001362837, intron 4 of 7) intron (NM_001362837, intron 4 of 7) 286474 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 164-22 chr16 3690524 3691067 + 0.5 NA intron (NM_001272049, intron 1 of 16) intron (NM_001272049, intron 1 of 16) 26729 NM_001272049 10131 Hs.30345 NM_016292 ENSG00000126602 TRAP1 HSP 75|HSP75|HSP90L|TRAP-1 TNF receptor associated protein 1 protein-coding 149-91 chr6 124159974 124160470 + 0.5 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -122783 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 179.25-76 chr8 125967212 125967822 + 0.5 NA Intergenic AluJr4|SINE|Alu -16320 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 159-72 chr6 64281829 64282287 + 0.5 NA intron (NM_001292009, intron 30 of 43) intron (NM_001292009, intron 30 of 43) 475222 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 171.75-56 chr4 77357904 77358366 + 0.5 NA Intergenic Intergenic -153618 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 149-49 chr2 213595833 213596344 + 0.5 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -161979 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 213.5-48 chr9 28362439 28363273 + 0.5 NA intron (NM_001354574, intron 4 of 5) intron (NM_001354574, intron 4 of 5) 356449 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 148.5-68 chr4 31132071 31132623 + 0.5 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -38797 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 161.5-90 chr8 118752011 118752505 + 0.5 NA Intergenic THE1C|LTR|ERVL-MaLR -130295 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 199.5-5 chr11 78434389 78435115 + 0.5 NA Intergenic L2a|LINE|L2 -4916 NR_120564 101928865 Hs.407574 NR_120564 ENSG00000251323 LINC02728 - long intergenic non-protein coding RNA 2728 ncRNA 158.5-5 chr1 199786318 199786714 + 0.5 NA Intergenic L1ME2z|LINE|L1 -241194 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 156-87 chr7 33359940 33360423 + 0.5 NA intron (NM_198428, intron 16 of 22) L1ME4a|LINE|L1 230617 NM_001348040 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 202-38 chr4 150048017 150048604 + 0.5 NA Intergenic Intergenic -30135 NM_001040261 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 206.25-30 chr3 166970280 166971066 + 0.5 NA Intergenic Intergenic 71990 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 171.5-105 chr8 139437025 139437514 + 0.5 NA Intergenic Intergenic 265854 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 177.75-62 chr5 112491574 112492167 + 0.5 NA Intergenic MIR3|SINE|MIR 72287 NR_027706 54508 Hs.591264 NR_027706 ENSG00000278921 EPB41L4A-DT EPB41L4A-AS2 EPB41L4A divergent transcript ncRNA 148.75-92 chr6 101639449 101639978 + 0.5 NA intron (NM_001166247, intron 3 of 16) intron (NM_001166247, intron 3 of 16) 240728 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 185.5-17 chr11 25383593 25384132 + 0.5 NA Intergenic Intergenic -805261 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 211.5-44 chr7 26250895 26251599 + 0.5 NA Intergenic L1MC4|LINE|L1 -40631 NM_001362754 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 276.25-6 chr17 54275152 54275973 + 0.5 NA Intergenic L2c|LINE|L2 452635 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 236.25-35 chr8 122607949 122608647 + 0.5 NA Intergenic AluSq2|SINE|Alu -39654 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 192.25 chr1 63465773 63466330 + 0.5 NA intron (NM_001347145, intron 4 of 7) intron (NM_001347145, intron 4 of 7) 57222 NM_001347147 23421 Hs.166539 NM_014288 ENSG00000142856 ITGB3BP CENP-R|CENPR|HSU37139|NRIF3|TAP20 integrin subunit beta 3 binding protein protein-coding 184.5-71 chr8 118901295 118901840 + 0.5 NA Intergenic Intergenic 50318 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 153-48 chr20 52475090 52475626 + 0.5 NA Intergenic Intergenic -145480 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 164.75-44 chr2 89826424 89826980 + 0.5 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -188795 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 203-34 chr5 18604722 18605321 + 0.5 NA Intergenic LTR79|LTR|ERVL 797747 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 219-27 chr8 120037847 120038661 + 0.5 NA intron (NM_022783, intron 8 of 8) AluSz6|SINE|Alu -86848 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 198 chr1 31967065 31967720 + 0.5 NA Intergenic AluSx1|SINE|Alu -29024 NM_080391 8073 Hs.470477 NM_003479 ENSG00000184007 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase 4A2 protein-coding 170.5-53 chr3 132506771 132507265 + 0.5 NA intron (NM_001329126, intron 43 of 56) intron (NM_001329126, intron 43 of 56) 89516 NM_001329126 23317 Hs.12707 NM_015268 ENSG00000138246 DNAJC13 PARK21|RME8 DnaJ heat shock protein family (Hsp40) member C13 protein-coding 223.5-45 chr8 91037042 91037619 + 0.5 NA intron (NM_018710, intron 1 of 6) L2b|LINE|L2 3529 NM_018710 55529 Hs.202517 NM_018710 ENSG00000155099 PIP4P2 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 protein-coding 159.25-87 chrX 35312315 35312831 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 369777 NM_152631 170062 Hs.197801 NM_152631 ENSG00000189132 FAM47B - family with sequence similarity 47 member B protein-coding 260.5-10 chr3 99216962 99217712 + 0.5 NA Intergenic L2a|LINE|L2 -315642 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 185-32 chr19 33956649 33957316 + 0.5 NA Intergenic Intergenic 160112 NM_024076 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 161.75-98 chr9 24148012 24148509 + 0.5 NA Intergenic Intergenic -297659 NM_001351460 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 314-7 chr5 13712670 13713667 + 0.5 NA intron (NM_001369, intron 75 of 78) L1PB1|LINE|L1 231312 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 163.75-22 chr13 83617115 83617572 + 0.5 NA Intergenic L1MEc|LINE|L1 265050 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 194.5-35 chr2 225222607 225223165 + 0.5 NA Intergenic Intergenic -176824 NM_001371273 181.75-34 chr2 128336327 128336931 + 0.5 NA Intergenic L1ME2|LINE|L1 -17761 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 174.5-33 chr17 52258607 52259138 + 0.5 NA Intergenic L1PB4|LINE|L1 -98855 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 158.5-104 chr9 99700513 99700899 + 0.5 NA intron (NR_109802, intron 3 of 6) intron (NR_109802, intron 3 of 6) 119183 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 176.75-5 chr1 171273289 171273794 + 0.5 NA intron (NM_002021, intron 3 of 8) AluJo|SINE|Alu 15618 NM_001282692 2326 Hs.1424 NM_002021 ENSG00000010932 FMO1 - flavin containing dimethylaniline monoxygenase 1 protein-coding 180.25-28 chr2 30725045 30725633 + 0.5 NA intron (NM_144575, intron 22 of 22) L3|LINE|CR1 82107 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 226-19 chr4 34186030 34186859 + 0.5 NA intron (NR_147184, intron 2 of 3) MER2|DNA|TcMar-Tigger 83303 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 153.25-49 chr18 71069128 71069497 + 0.5 NA Intergenic L3|LINE|CR1 -418358 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 215-39 chrX 33938147 33938637 + 0.5 NA Intergenic L2a|LINE|L2 193938 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 186.25-43 chr4 110836252 110836856 + 0.5 NA Intergenic Intergenic 24093 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 166.75-2 chr1 77326583 77327056 + 0.5 NA intron (NM_012093, intron 5 of 13) intron (NM_012093, intron 5 of 13) 43732 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 152.5-69 chr3 95171225 95171551 + 0.5 NA Intergenic AluSx3|SINE|Alu 233125 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 151-16 chr14 57098946 57099380 + 0.5 NA Intergenic L1PREC2|LINE|L1 169742 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 173.5-9 chr10 9586941 9587335 + 0.5 NA Intergenic Intergenic -291545 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 193.5-63 chr5 151753342 151753781 + 0.5 NA intron (NM_004045, intron 1 of 3) intron (NM_004045, intron 1 of 3) 5070 NM_004045 475 Hs.125213 NM_004045 ENSG00000177556 ATOX1 ATX1|HAH1 antioxidant 1 copper chaperone protein-coding 150.5-111 chr7 117892110 117892523 + 0.5 NA Intergenic Intergenic -18875 NM_001363351 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 155.5-109 chr8 133225193 133225702 + 0.5 NA non-coding (NR_037944, exon 2 of 3) non-coding (NR_037944, exon 2 of 3) 34408 NM_080838 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 174.75-32 chr2 59944780 59945188 + 0.5 NA Intergenic Intergenic 438052 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 184.75-37 chr18 3109034 3109642 + 0.5 NA intron (NM_019856, intron 21 of 36) L4_C_Mam|LINE|RTE-X -97391 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 148.25-16 chr11 31341954 31342445 + 0.5 NA intron (NM_181807, intron 1 of 8) MamGypLTR3|LTR|Gypsy 27540 NM_001367979 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 183.25-41 chr3 2675653 2676145 + 0.5 NA intron (NM_175607, intron 4 of 24) MIRb|SINE|MIR -216316 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 152-65 chr4 161492850 161493314 + 0.5 NA intron (NM_001128428, intron 11 of 14) intron (NM_001128428, intron 11 of 14) -529651 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 180.5-38 chr2 78647902 78648519 + 0.5 NA Intergenic MER20|DNA|hAT-Charlie 102679 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 180.5-24 chr15 98480647 98481273 + 0.5 NA intron (NM_182562, intron 3 of 6) intron (NM_182562, intron 3 of 6) 33376 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 205.75-12 chr10 73186630 73187064 + 0.5 NA intron (NM_173348, intron 3 of 13) L1MB7|LINE|L1 18728 NM_173348 317662 Hs.408577 NM_173348 ENSG00000138286 FAM149B1 KIAA0974 family with sequence similarity 149 member B1 protein-coding 165.25-72 chr9 93194366 93194937 + 0.5 NA intron (NM_006648, intron 1 of 28) L1MC2|LINE|L1 9721 NM_001282394 65268 Hs.654856 NM_006648 ENSG00000165238 WNK2 NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43 WNK lysine deficient protein kinase 2 protein-coding 178-11 chr11 40061861 40062387 + 0.5 NA Intergenic Intergenic 231006 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 160-81 chr8 60107149 60107659 + 0.5 NA Intergenic L1MA5A|LINE|L1 173996 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 152-35 chr2 48794309 48794842 + 0.5 NA Intergenic L1MB3|LINE|L1 -38851 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 203.25-9 chr14 37401248 37401937 + 0.5 NA intron (NM_138731, intron 11 of 13) L1MEj|LINE|L1 193657 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 181.25-24 chr2 32445466 32446188 + 0.5 NA intron (NM_016252, intron 21 of 73) intron (NM_016252, intron 21 of 73) -86326 NR_030285 693143 NR_030285 ENSG00000207653 MIR558 MIRN558|hsa-mir-558 microRNA 558 ncRNA 149.25-18 chr12 14367667 14368093 + 0.5 NA intron (NM_001286515, intron 1 of 12) intron (NM_001286515, intron 1 of 12) 2198 NM_001286514 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 146.5-21 chr13 64607860 64608299 + 0.5 NA Intergenic Intergenic -532068 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 172.25-20 chr12 99910974 99911647 + 0.5 NA intron (NM_152788, intron 1 of 25) intron (NM_152788, intron 1 of 25) 73344 NM_001352187 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 197.5-6 chr10 22755168 22755708 + 0.5 NA Intergenic Intergenic -40860 NM_005028 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 179.25-21 chr12 11636380 11636885 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL -13222 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 156.75-2 chr1 33044172 33044766 + 0.5 NA Intergenic AluSx|SINE|Alu -7558 NM_001319140 204 Hs.470907 NM_001625 ENSG00000004455 AK2 ADK2 adenylate kinase 2 protein-coding 258-16 chr7 46664718 46665518 + 0.5 NA Intergenic Intergenic 32004 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 169.25-61 chr9 29396932 29397440 + 0.5 NA Intergenic Intergenic -183585 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 155-42 chr2 55685874 55686478 + 0.5 NA intron (NM_033109, intron 3 of 27) intron (NM_033109, intron 3 of 27) 7668 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 192.75-32 chr2 201399129 201399873 + 0.5 NA intron (NM_015049, intron 4 of 15) intron (NM_015049, intron 4 of 15) -42103 NM_139163 130540 Hs.107944 NM_139163 ENSG00000155749 FLACC1 ALS2CR12 flagellum associated containing coiled-coil domains 1 protein-coding 151-58 chr3 6865513 6865987 + 0.5 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) 4635 NM_000844 2917 Hs.606393 NM_000844 ENSG00000196277 GRM7 GLUR7|GPRC1G|MGLU7|MGLUR7|PPP1R87 glutamate metabotropic receptor 7 protein-coding 177.25-63 chr5 155698952 155699390 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL -627586 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 209-19 chr18 77764800 77765299 + 0.5 NA Intergenic Intergenic 228678 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 220-21 chr4 71987412 71988018 + 0.5 NA Intergenic L1MC4|LINE|L1 -44089 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 162-42 chr20 50486035 50486576 + 0.5 NA Intergenic AluSq2|SINE|Alu -24016 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 187.75-3 chr1 147313447 147314029 + 0.5 NA Intergenic MLT1J|LTR|ERVL-MaLR 70596 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 181.5-61 chr6 125506718 125507422 + 0.5 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -167283 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 153.75-59 chr4 81432926 81433539 + 0.5 NA intron (NM_152545, intron 12 of 13) AluJb|SINE|Alu 38675 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 158-74 chr5 129484218 129484692 + 0.5 NA intron (NM_133638, intron 2 of 22) L1ME3Cz|LINE|L1 -23766 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 173.25-62 chr5 67569950 67570419 + 0.5 NA Intergenic L1MEc|LINE|L1 76605 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 187.75-9 chr10 64699024 64699745 + 0.5 NA Intergenic MSTB|LTR|ERVL-MaLR -126144 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 169.25-68 chrX 81434714 81435091 + 0.5 NA Intergenic L1PA16|LINE|L1 232800 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 172.25-15 chr12 21296177 21296558 + 0.5 NA intron (NM_021094, intron 8 of 13) AluJr|SINE|Alu 38550 NM_021094 6579 Hs.46440 NM_005075 ENSG00000084453 SLCO1A2 OATP|OATP-A|OATP1A2|SLC21A3 solute carrier organic anion transporter family member 1A2 protein-coding 161-7 chr1 220911627 220912160 + 0.5 NA Intergenic L1MA4A|LINE|L1 -31753 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 146.75-58 chr2 184186811 184187326 + 0.5 NA Intergenic Intergenic -191907 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 228.5-45 chr8 43141479 43142180 + 0.5 NA intron (NM_152419, intron 1 of 17) intron (NM_152419, intron 1 of 17) 1365 NM_001363227 138050 Hs.600384 NM_152419 ENSG00000165102 HGSNAT HGNAT|MPS3C|RP73|TMEM76 heparan-alpha-glucosaminide N-acetyltransferase protein-coding 165-31 chr15 86303474 86303906 + 0.5 NA intron (NR_046012, intron 3 of 3) intron (NR_046012, intron 3 of 3) 13278 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 164.5-31 chr2 43117650 43118121 + 0.5 NA Intergenic MLT1H2-int|LTR|ERVL-MaLR -15440 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 194.75-50 chr8 64693461 64694043 + 0.5 NA intron (NM_004820, intron 1 of 5) intron (NM_004820, intron 1 of 5) 104985 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 162.5-73 chr5 157904595 157905037 + 0.5 NA Intergenic Intergenic -45671 NM_001195555 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 170-10 chr10 102345967 102346556 + 0.5 NA intron (NM_001199378, intron 4 of 39) AluSx4|SINE|Alu -47849 NM_001322935 4791 Hs.73090 NM_002502 ENSG00000077150 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52 nuclear factor kappa B subunit 2 protein-coding 153-76 chr6 6258703 6259085 + 0.5 NA intron (NM_000129, intron 4 of 14) intron (NM_000129, intron 4 of 14) 61797 NM_000129 2162 Hs.335513 NM_000129 ENSG00000124491 F13A1 F13A coagulation factor XIII A chain protein-coding 176-45 chr3 191824573 191825090 + 0.5 NA Intergenic L1PREC2|LINE|L1 363668 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 187.75-30 chr18 28099602 28100114 + 0.5 NA intron (NM_001792, intron 2 of 15) intron (NM_001792, intron 2 of 15) -63217 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 156.5-81 chr5 26453102 26453506 + 0.5 NA Intergenic Intergenic 585282 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 175.5-66 chr3 176026797 176027355 + 0.5 NA Intergenic Intergenic -217475 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 230.75-17 chr18 4172881 4173789 + 0.5 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -91267 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 207.75-17 chr17 58397920 58398657 + 0.5 NA intron (NM_001305544, intron 2 of 9) intron (NM_001305544, intron 2 of 9) 4433 NM_001305545 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 148.75-56 chr20 23227127 23227682 + 0.5 NA Intergenic Intergenic -94768 NR_034149 200261 Hs.352228 NM_182535 ENSG00000233746 LINC00656 - long intergenic non-protein coding RNA 656 ncRNA 181-5 chr10 53748492 53749051 + 0.5 NA Intergenic AluSz6|SINE|Alu -737459 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 159.5-51 chr3 5165227 5165750 + 0.5 NA intron (NM_018184, intron 1 of 6) intron (NM_018184, intron 1 of 6) -22219 NM_014674 9695 Hs.224616 NM_014674 ENSG00000134109 EDEM1 EDEM ER degradation enhancing alpha-mannosidase like protein 1 protein-coding 151.5-101 chr8 113497646 113498154 + 0.5 NA Intergenic MER101|LTR|ERV1 -60961 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 150.75-29 chr18 9395061 9395567 + 0.5 NA intron (NM_020648, intron 3 of 4) L1MC4|LINE|L1 60541 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 182.5-22 chr15 58213861 58214538 + 0.5 NA Intergenic Intergenic 75818 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 159-47 chr21 30181318 30181817 + 0.5 NA Intergenic Intergenic -14762 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 169.5-28 chr12 62832887 62833365 + 0.5 NA intron (NM_020700, intron 1 of 9) intron (NM_020700, intron 1 of 9) 102024 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 176.5-62 chr4 105890479 105891097 + 0.5 NA Intergenic MLT1J1|LTR|ERVL-MaLR -4683 NM_001184693 255743 Hs.518921 NM_198278 ENSG00000168743 NPNT EGFL6L|POEM nephronectin protein-coding 169-69 chr8 100137530 100138079 + 0.5 NA intron (NR_036491, intron 2 of 4) intron (NR_036491, intron 2 of 4) 8013 NR_036491 286151 Hs.339577 NM_001029860 ENSG00000156509 FBXO43 EMI2|ERP1|FBX43 F-box protein 43 protein-coding 222.75-7 chr11 35890625 35891231 + 0.5 NA Intergenic AluJo|SINE|Alu -53053 NM_001304264 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 174.25-79 chr9 104610865 104611352 + 0.5 NA Intergenic HAL1M8|LINE|L1 -5481 NM_001004481 392376 Hs.553789 NM_001004481 ENSG00000276119 OR13C2 OR37K olfactory receptor family 13 subfamily C member 2 protein-coding 180.5-54 chr4 167617173 167617810 + 0.5 NA Intergenic L1MA4A|LINE|L1 -382901 NM_001204354 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 178.75-58 chr5 146119715 146120281 + 0.5 NA intron (NM_016460, intron 30 of 30) intron (NM_016460, intron 30 of 30) -14421 NM_001029869 153770 Hs.162369 NM_001029869 ENSG00000173261 PLAC8L1 - PLAC8 like 1 protein-coding 189.5-60 chr6 75925875 75926591 + 0.5 NA intron (NM_001563, intron 15 of 16) intron (NM_001563, intron 15 of 16) 146429 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 191.75-51 chr5 171663856 171664288 + 0.5 NA Intergenic L1MC1|LINE|L1 -121800 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 185.25-15 chr12 125363579 125364243 + 0.5 NA intron (NM_052907, intron 2 of 8) L1ME3Cz|LINE|L1 37295 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 155.5-87 chr6 47390801 47391319 + 0.5 NA Intergenic L1MA3|LINE|L1 -81155 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 228.25-16 chr2 193202898 193203605 + 0.5 NA Intergenic Intergenic 453406 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 177-71 chr9 25148237 25148682 + 0.5 NA Intergenic L1MB8|LINE|L1 530399 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 174.5-21 chr12 66499094 66499672 + 0.5 NA intron (NM_001366722, intron 7 of 24) MIRc|SINE|MIR 179693 NM_001178074 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 FRASRS3|GRIP glutamate receptor interacting protein 1 protein-coding 175.75-3 chr1 245924579 245925223 + 0.5 NA intron (NM_022743, intron 7 of 11) AluSz|SINE|Alu 492511 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 153-63 chr4 64883656 64884100 + 0.5 NA Intergenic Intergenic 120622 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 146-89 chr7 104611679 104612227 + 0.5 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 192139 NR_034142 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 199.5-34 chr3 192286728 192287316 + 0.5 NA intron (NM_004113, intron 4 of 5) A-rich|Low_complexity|Low_complexity 48392 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 170.75-37 chr20 54103684 54104123 + 0.5 NA Intergenic L1MA5|LINE|L1 -33138 NM_003657 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 155.75-80 chr4 107274652 107275044 + 0.5 NA Intergenic Intergenic -238535 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 249-9 chr3 185313545 185314189 + 0.5 NA intron (NM_001242317, intron 2 of 12) intron (NM_001242317, intron 2 of 12) 30906 NM_001242317 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 186.5-74 chr9 97331843 97332341 + 0.5 NA intron (NM_001348010, intron 19 of 20) L1PA15|LINE|L1 24433 NM_020893 100499483 Hs.435629 NM_020893 ENSG00000197816 CCDC180 C9orf174 coiled-coil domain containing 180 protein-coding 183.75-73 chr5 112867376 112867924 + 0.5 NA 3' UTR (NM_003135, exon 5 of 5) 3' UTR (NM_003135, exon 5 of 5) 6363 NM_001204199 6728 Hs.637001 NM_003135 ENSG00000153037 SRP19 - signal recognition particle 19 protein-coding 148.75-62 chr3 27108470 27108907 + 0.5 NA Intergenic Intergenic 107835 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 177.75-22 chr17 29487689 29488263 + 0.5 NA intron (NM_025142, intron 8 of 17) L1MC4|LINE|L1 79061 NM_198147 116236 Hs.106510 NM_198147 ENSG00000168792 ABHD15 - abhydrolase domain containing 15 protein-coding 155.75-25 chr12 87736881 87737386 + 0.5 NA Intergenic L1MC3|LINE|L1 -31679 NR_149056 110806294 Hs.615803 NR_149056 LINC02258 - long intergenic non-protein coding RNA 2258 ncRNA 147.75-118 chr9 103455638 103456040 + 0.5 NA Intergenic Intergenic -130806 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 169.75-9 chr1 188125397 188125946 + 0.5 NA Intergenic Intergenic 682043 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 168.75-98 chr8 54899953 54900359 + 0.5 NA Intergenic Intergenic -201872 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 183.75-67 chr5 6570187 6570696 + 0.5 NA Intergenic Intergenic -11695 NR_024423 255167 Hs.435515 NR_024423 ENSG00000250056 LINC01018 SRHC long intergenic non-protein coding RNA 1018 ncRNA 175-27 chr22 40457510 40458187 + 0.5 NA intron (NM_020831, intron 4 of 14) intron (NM_020831, intron 4 of 14) 5592 NM_001282660 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 202-17 chr17 69962995 69963618 + 0.5 NA intron (NR_110875, intron 1 of 4) intron (NR_110875, intron 1 of 4) 1599 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 177-40 chr3 72531474 72531973 + 0.5 NA Intergenic L1MC5|LINE|L1 -85100 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 185.75-39 chr2 46500689 46501321 + 0.5 NA Intergenic AluJb|SINE|Alu 21440 NM_001145051 388946 Hs.733348 NM_001145051 ENSG00000284701 TMEM247 - transmembrane protein 247 protein-coding 154.5-25 chr13 61605748 61606210 + 0.5 NA Intergenic (TTTAT)n|Simple_repeat|Simple_repeat -178033 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 235.5-35 chr7 43425172 43425850 + 0.5 NA intron (NM_001287059, intron 7 of 27) intron (NM_001287059, intron 7 of 27) 97031 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 186.75 chr1 38717661 38718202 + 0.5 NA Intergenic Intergenic 141841 NM_022157 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 194-47 chr6 47075731 47076410 + 0.5 NA Intergenic Intergenic -33738 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 186.5-32 chr20 20710241 20710960 + 0.5 NA intron (NM_020343, intron 1 of 39) intron (NM_020343, intron 1 of 39) 2044 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 155-43 chr2 135127269 135127842 + 0.5 NA intron (NM_001172435, intron 11 of 24) AluY|SINE|Alu -9073 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 149.25-5 chr1 239237211 239237736 + 0.5 NA Intergenic L1ME1|LINE|L1 -149095 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 157.75-8 chr1 187351483 187351955 + 0.5 NA intron (NR_126347, intron 3 of 3) intron (NR_126347, intron 3 of 3) -91909 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 159-39 chr2 160678586 160679196 + 0.5 NA Intergenic Intergenic -185084 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 147-95 chr5 180964164 180964644 + 0.5 NA Intergenic L1MA7|LINE|L1 -24442 NM_197975 10917 Hs.225949 NM_006707 ENSG00000168903 BTNL3 BTN9.1|BTNLR butyrophilin like 3 protein-coding 159-58 chr3 160265329 160265706 + 0.5 NA intron (NM_001190242, intron 18 of 18) intron (NM_001190242, intron 18 of 18) 39881 NM_001168214 401097 Hs.729755 NM_001168214 ENSG00000180044 C3orf80 - chromosome 3 open reading frame 80 protein-coding 146.25-71 chr4 52676603 52677076 + 0.5 NA Intergenic Intergenic 17433 NR_125363 643783 Hs.631514 NR_125363 ENSG00000248866 USP46-AS1 - USP46 antisense RNA 1 ncRNA 184-59 chr9 95178828 95179218 + 0.5 NA intron (NM_001243744, intron 4 of 13) intron (NM_001243744, intron 4 of 13) -92929 NR_036109 100422842 NR_036109 ENSG00000207617 MIR3074 mir-3074 microRNA 3074 ncRNA 174.5-38 chr2 58655665 58656299 + 0.5 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 135229 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 229.5-42 chrX 20607042 20607793 + 0.5 NA Intergenic MER5A1|DNA|hAT-Charlie -340508 NM_004586 6197 Hs.445387 NM_004586 ENSG00000177189 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase A3 protein-coding 184.5-59 chr5 27182526 27183135 + 0.5 NA Intergenic Intergenic -144244 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 201.75-3 chr1 225252433 225252953 + 0.5 NA intron (NM_001367479, intron 44 of 85) intron (NM_001367479, intron 44 of 85) 175345 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 220.5-40 chr9 74775970 74776538 + 0.5 NA intron (NM_017662, intron 23 of 38) intron (NM_017662, intron 23 of 38) 111093 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 158.75-20 chr13 74306858 74307437 + 0.5 NA Intergenic Intergenic 75703 NR_144451 100507612 Hs.447508 NR_144451 ENSG00000235532 LINC00402 - long intergenic non-protein coding RNA 402 ncRNA 158.25-66 chr3 129284334 129284738 + 0.5 NA intron (NM_001370345, intron 2 of 5) Tigger17a|DNA|TcMar-Tigger 5542 NM_001370343 56941 Hs.458320 NM_020187 ENSG00000183624 HMCES C3orf37|DC12|SRAPD1 5-hydroxymethylcytosine binding, ES cell specific protein-coding 186-53 chr8 106588359 106589027 + 0.5 NA intron (NM_018002, intron 3 of 15) AluSg4|SINE|Alu -69115 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 153-41 chr2 164735841 164736234 + 0.5 NA intron (NM_001365670, intron 3 of 13) intron (NM_001365670, intron 3 of 13) -48260 NR_033309 100337591 Hs.664357 NR_033309 ENSG00000206869 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 160.75-99 chr7 14904369 14904887 + 0.5 NA promoter-TSS (NM_001350718) promoter-TSS (NM_001350718) -972 NM_001350715 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 150.25-65 chr3 119365787 119366341 + 0.5 NA intron (NM_020754, intron 2 of 11) intron (NM_020754, intron 2 of 11) -43304 NR_046748 100874246 Hs.607097 NR_046748 ENSG00000241155 ARHGAP31-AS1 - ARHGAP31 antisense RNA 1 ncRNA 157.25-28 chr15 37331251 37331597 + 0.5 NA Intergenic Intergenic -230113 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 165-17 chr12 11888529 11889047 + 0.5 NA intron (NM_001987, intron 7 of 7) AluJo|SINE|Alu -161073 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 149.25-115 chr8 131151814 131152284 + 0.5 NA Intergenic Intergenic -111140 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 177.25-52 chr4 109568067 109568749 + 0.5 NA intron (NM_017918, intron 1 of 7) L2c|LINE|L2 8162 NM_017918 55013 Hs.234149 NM_017918 ENSG00000005059 MCUB CCDC109B mitochondrial calcium uniporter dominant negative beta subunit protein-coding 253.25-17 chr5 18494200 18494998 + 0.5 NA Intergenic Tigger13a|DNA|TcMar-Tigger 687325 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 185.25-65 chr5 19691507 19691967 + 0.5 NA intron (NM_001349562, intron 5 of 13) L1MA4A|LINE|L1 194535 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 149-30 chr17 55822534 55822901 + 0.5 NA intron (NM_001330378, intron 5 of 5) intron (NM_001330378, intron 5 of 5) 71612 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 176.5-70 chr6 46624849 46625400 + 0.5 NA intron (NM_016593, intron 7 of 11) intron (NM_016593, intron 7 of 11) 27694 NM_016593 51302 Hs.387367 NM_016593 ENSG00000146233 CYP39A1 - cytochrome P450 family 39 subfamily A member 1 protein-coding 152.25-76 chr5 14418528 14419081 + 0.5 NA intron (NM_007118, intron 33 of 56) intron (NM_007118, intron 33 of 56) -45179 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 147.5-59 chr3 58608036 58608471 + 0.5 NA intron (NR_134853, intron 2 of 3) intron (NR_134853, intron 2 of 3) 1173 NR_134853 105377108 NR_134853 ENSG00000244383 FAM3D-AS1 lnc-KCTD6-3 FAM3D antisense RNA 1 ncRNA 147.5-96 chr7 53319176 53319668 + 0.5 NA Intergenic Intergenic 283789 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 191.75-20 chr12 95480526 95481176 + 0.5 NA intron (NM_001317183, intron 2 of 9) L1ME1|LINE|L1 6699 NM_006838 10988 Hs.444986 NM_006838 ENSG00000111142 METAP2 MAP2|MNPEP|p67eIF2 methionyl aminopeptidase 2 protein-coding 198.5-52 chr7 108245632 108246240 + 0.5 NA intron (NM_001371133, intron 3 of 28) intron (NM_001371133, intron 3 of 28) -2551 NM_001371182 193.25-49 chr4 176907108 176907564 + 0.5 NA Intergenic Intergenic 31634 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 181-30 chr3 3538319 3538756 + 0.5 NA Intergenic Intergenic -260894 NM_020873 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 146.75-32 chr15 61551785 61552173 + 0.5 NA Intergenic Intergenic -177939 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 175.5-50 chr2 162997383 162997868 + 0.5 NA Intergenic Intergenic -158858 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 149.5-39 chr2 23402886 23403348 + 0.5 NA intron (NM_052920, intron 1 of 13) intron (NM_052920, intron 1 of 13) 17938 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 213-36 chr9 27499014 27499600 + 0.5 NA intron (NM_024761, intron 1 of 3) intron (NM_024761, intron 1 of 3) -25007 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 156.25-75 chr5 130667021 130667629 + 0.5 NA Intergenic L1PA11|LINE|L1 497931 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 195.75-55 chr4 174048457 174048848 + 0.5 NA Intergenic MER44A|DNA|TcMar-Tigger 151379 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 149.25-9 chr10 62066576 62067154 + 0.5 NA intron (NM_001244638, intron 4 of 6) L2a|LINE|L2 17508 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 150.25-87 chr5 166558984 166559380 + 0.5 NA Intergenic Intergenic 367188 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 170.25-21 chr15 54346016 54346582 + 0.5 NA intron (NM_001329919, intron 16 of 31) intron (NM_001329919, intron 16 of 31) 333651 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 180.75-61 chr7 48450172 48450646 + 0.5 NA intron (NM_152701, intron 42 of 61) intron (NM_152701, intron 42 of 61) 278951 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 197.25-24 chr18 4365648 4366388 + 0.5 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 89248 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 227.5-30 chr7 56710733 56711369 + 0.5 NA Intergenic Intergenic 101685 NR_130727 401357 Hs.457696 NR_130727 LOC401357 - uncharacterized LOC401357 ncRNA 177.5-63 chrX 67044530 67045113 + 0.5 NA Intergenic Intergenic -405523 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 158.25-36 chr14 53325312 53325648 + 0.5 NA Intergenic MamGypLTR3a|LTR|Gypsy 172126 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 149.75-65 chr4 106812754 106813279 + 0.5 NA Intergenic L3|LINE|CR1 223297 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 158.5-47 chr2 140406618 140407113 + 0.5 NA intron (NM_018557, intron 66 of 90) L1PB2|LINE|L1 179820 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 187-45 chr5 53969321 53970010 + 0.5 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) -18066 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 207.25-38 chr22 29544789 29545382 + 0.5 NA intron (NM_001002879, intron 2 of 19) THE1A|LTR|ERVL-MaLR 8570 NM_001002879 8563 Hs.75361 NM_003678 ENSG00000100296 THOC5 C22orf19|Fmip|PK1.3|fSAP79 THO complex 5 protein-coding 157.25-52 chr2 163694602 163695173 + 0.5 NA intron (NM_001321825, intron 1 of 1) FLAM_A|SINE|Alu 41121 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 149.75-29 chr16 59667237 59667606 + 0.5 NA Intergenic MIRc|SINE|MIR 87770 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 157.5-57 chr22 24904679 24905133 + 0.5 NA intron (NM_001098498, intron 19 of 23) L2c|LINE|L2 41789 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 173.75-67 chr8 51196944 51197291 + 0.5 NA Intergenic L1MC3|LINE|L1 612328 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 171-6 chr1 197303929 197304559 + 0.5 NA intron (NM_001257965, intron 2 of 14) intron (NM_001257965, intron 2 of 14) 35992 NR_047564 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 152-13 chr11 9724271 9724768 + 0.5 NA intron (NM_015055, intron 3 of 11) intron (NM_015055, intron 3 of 11) -33774 NR_036485 283104 Hs.632156 NR_036485 ENSG00000246273 SBF2-AS1 - SBF2 antisense RNA 1 ncRNA 253-9 chr6 66733222 66734150 + 0.5 NA Intergenic Kanga1c|DNA|TcMar-Tc2 945807 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 157.5-46 chr2 49503439 49504041 + 0.5 NA Intergenic L1MC4|LINE|L1 -349213 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 157-33 chr14 62378238 62378794 + 0.5 NA Intergenic L1MD2|LINE|L1 -238543 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 165.5-35 chr14 95852292 95852943 + 0.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -23775 NR_132399 100507043 Hs.455955 NR_038861 ENSG00000250366 TUNAR HI-LNC78|LINC00617|TUNA TCL1 upstream neural differentiation-associated RNA ncRNA 203.75-40 chr5 161412405 161413131 + 0.5 NA intron (NM_000813, intron 5 of 9) L2a|LINE|L2 135356 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 155.5-48 chr2 99111699 99112175 + 0.5 NA intron (NM_001349012, intron 2 of 18) intron (NM_001349012, intron 2 of 18) 29243 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 158.25-99 chr7 7164365 7164947 + 0.5 NA Intergenic LTR16A|LTR|ERVL -17959 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 160.5-29 chr14 52235207 52235775 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -32207 NM_000953 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 159.25-44 chr21 19647803 19648232 + 0.5 NA Intergenic Intergenic 251738 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 178.25-8 chr11 96405139 96405740 + 0.5 NA Intergenic Intergenic 15426 NM_001261833 8690 Hs.105940 NM_003772 ENSG00000183340 JRKL HHMJG JRK like protein-coding 245.25-29 chrUn_KI270590v1 2426 3187 + 0.5 NA NA ALR/Alpha|Satellite|centr NA NA 202.5-15 chr12 59129340 59129827 + 0.5 NA Intergenic MER101|LTR|ERV1 -209045 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 147.75-88 chr5 42101040 42101568 + 0.5 NA Intergenic THE1C-int|LTR|ERVL-MaLR 74041 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 187.75-40 chr20 13536859 13537557 + 0.5 NA intron (NM_001323602, intron 4 of 9) intron (NM_001323602, intron 4 of 9) 101724 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 166.75-42 chr2 137294456 137294959 + 0.5 NA intron (NM_001316349, intron 12 of 27) MER44A|DNA|TcMar-Tigger 529162 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 187-47 chr5 118901891 118902508 + 0.5 NA intron (NM_001308081, intron 4 of 5) intron (NM_001308081, intron 4 of 5) -72387 NR_036052 100302285 NR_036052 ENSG00000284378 MIR1244-1 MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1 microRNA 1244-1 ncRNA 150.25-29 chr13 84776462 84777012 + 0.5 NA Intergenic Intergenic -6917 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 153.5-30 chr14 58925449 58925785 + 0.5 NA intron (NR_110547, intron 3 of 5) L1PA10|LINE|L1 97329 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 159-79 chr7 26754509 26754913 + 0.5 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 103012 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 228-25 chr6 124232487 124233051 + 0.5 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -50236 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 180-57 chr5 166383081 166383602 + 0.5 NA Intergenic Intergenic 543029 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 156.75-50 chr2 65412186 65412626 + 0.5 NA intron (NM_181784, intron 1 of 5) LTR26D|LTR|ERV1 20193 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 166.5-69 chr5 171973024 171973585 + 0.5 NA intron (NM_012300, intron 1 of 12) L1MC5a|LINE|L1 33569 NM_033644 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 194.75-2 chr1 65986112 65986843 + 0.5 NA intron (NM_002600, intron 3 of 16) L2c|LINE|L2 -6139 NM_001037340 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 159.75-78 chr4 181016884 181017465 + 0.5 NA Intergenic AluSz|SINE|Alu 141975 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 202.5-66 chrX 67171122 67171553 + 0.5 NA Intergenic L1M1|LINE|L1 -372684 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 173.25-52 chr3 176923483 176923924 + 0.5 NA Intergenic Intergenic -106702 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 211-36 chr8 67843723 67844471 + 0.5 NA Intergenic MER4-int|LTR|ERV1 -97737 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 230.75-26 chr21 38967943 38968832 + 0.5 NA Intergenic Intergenic 9387 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LINC01700 - long intergenic non-protein coding RNA 1700 ncRNA 159.25-50 chr3 77089597 77090066 + 0.5 NA intron (NM_001290039, intron 1 of 26) intron (NM_001290039, intron 1 of 26) -8181 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 156.5-20 chr10 53040378 53040827 + 0.5 NA Intergenic LTR53|LTR|ERVL -268902 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 232.5-5 chr1 238727696 238728387 + 0.5 NA Intergenic Intergenic -242024 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 152.75-59 chr21 20688100 20688475 + 0.5 NA Intergenic Intergenic 114821 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 186-17 chr18 53905290 53905943 + 0.5 NA Intergenic Intergenic 316796 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 160.75-41 chr16 4044600 4044996 + 0.5 NA intron (NM_001116, intron 2 of 10) intron (NM_001116, intron 2 of 10) 71644 NM_001116 115 Hs.391860 NM_001116 ENSG00000162104 ADCY9 AC9|ACIX adenylate cyclase 9 protein-coding 188.5-11 chr10 116403712 116404430 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -23776 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 208.75-32 chr6 70261555 70262101 + 0.5 NA intron (NM_001851, intron 19 of 37) MARNA|DNA|TcMar-Mariner 21369 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 158-25 chr16 78985123 78985535 + 0.5 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 615408 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 194.5-10 chr11 10181752 10182348 + 0.5 NA intron (NM_030962, intron 2 of 39) intron (NM_030962, intron 2 of 39) 112157 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 199.25-71 chr9 31536177 31536717 + 0.5 NA Intergenic Intergenic -154957 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 147-35 chr18 35015783 35016222 + 0.5 NA intron (NM_001143827, intron 2 of 7) L1PA16|LINE|L1 -25411 NM_014268 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 157.25-96 chr8 48190361 48190873 + 0.5 NA Intergenic Intergenic 182186 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 230-21 chr3 186763885 186764692 + 0.5 NA Intergenic Intergenic -19289 NM_001967 1974 Hs.518475 NM_001967 ENSG00000156976 EIF4A2 BM-010|DDX2B|EIF4A|EIF4F|eIF-4A-II|eIF4A-II eukaryotic translation initiation factor 4A2 protein-coding 158.25-25 chr11 96731225 96731853 + 0.5 NA Intergenic Intergenic 223114 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 194.5-51 chr6 52034720 52035183 + 0.5 NA intron (NM_138694, intron 28 of 66) intron (NM_138694, intron 28 of 66) 52662 NM_138694 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 176.75-69 chr5 77056888 77057432 + 0.5 NA intron (NM_018046, intron 11 of 13) L1ME1|LINE|L1 23411 NR_003014 677828 Hs.693249 NR_003014 ENSG00000238961 SNORA47 HBI-115 small nucleolar RNA, H/ACA box 47 snoRNA 153.5-44 chr2 18515961 18516506 + 0.5 NA Intergenic Intergenic 44420 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 180-6 chr10 51526148 51526721 + 0.5 NA intron (NM_001098512, intron 3 of 17) Charlie5|DNA|hAT-Charlie 173161 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 153.75-28 chr18 38248642 38249065 + 0.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 591718 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 162-4 chr1 119416957 119417491 + 0.5 NA intron (NM_000198, intron 2 of 3) intron (NM_000198, intron 2 of 3) 2074 NM_000198 3284 Hs.654399 NM_000198 ENSG00000203859 HSD3B2 HSD3B|HSDB|SDR11E2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 protein-coding 152.5-17 chr12 24959093 24959541 + 0.5 NA Intergenic MIR|SINE|MIR -10216 NM_001178091 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 169.25-55 chr8 110841339 110841824 + 0.5 NA Intergenic Intergenic 185852 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 180.25-18 chr14 43080978 43081445 + 0.5 NA Intergenic L1MB3|LINE|L1 1426072 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 146.5-38 chr17 53130196 53130560 + 0.5 NA Intergenic L1M2|LINE|L1 144873 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 162.5-2 chr1 25886021 25886415 + 0.5 NA intron (NM_001145454, intron 4 of 4) intron (NM_001145454, intron 4 of 4) -14965 NM_178422 164091 Hs.523652 NM_178422 ENSG00000182749 PAQR7 MPRA|PGLP|mSR progestin and adipoQ receptor family member 7 protein-coding 167.75-58 chr3 178690939 178691581 + 0.5 NA intron (NM_001278911, intron 1 of 4) L1PA13|LINE|L1 132410 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 146.5-61 chr2 196958557 196959006 + 0.5 NA Intergenic MSTA|LTR|ERVL-MaLR -32074 NM_001321100 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 178.25-40 chr3 121672169 121672700 + 0.5 NA intron (NM_001256486, intron 17 of 21) L1MA4|LINE|L1 -11531 NM_001292041 3059 Hs.14601 NM_005335 ENSG00000180353 HCLS1 CTTNL|HS1|lckBP1|p75 hematopoietic cell-specific Lyn substrate 1 protein-coding 171.5-71 chr4 26170591 26171123 + 0.5 NA Intergenic MIRb|SINE|MIR -148853 NM_005349 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 181-54 chr8 126995792 126996398 + 0.5 NA Intergenic Intergenic -17059 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 173-38 chr2 72343713 72344314 + 0.5 NA intron (NR_135774, intron 17 of 19) L1M4c|LINE|L1 -196151 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 262.75-19 chr5 132784474 132785338 + 0.5 NA Intergenic AluSx|SINE|Alu -7037 NM_001098813 23176 Hs.522057 NM_015146 ENSG00000164402 SEPTIN8 SEP2|SEPT8 septin 8 protein-coding 166-52 chr3 172927225 172927746 + 0.5 NA intron (NM_031955, intron 6 of 10) intron (NM_031955, intron 6 of 10) 176483 NM_001349099 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 207.5-21 chr18 73125037 73125803 + 0.5 NA Intergenic Intergenic 139078 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 198.75-28 chr17 67990411 67990953 + 0.5 NA TTS (NM_181655) TTS (NM_181655) 2924 NM_181656 284018 Hs.90790 NM_181655 ENSG00000186665 C17orf58 - chromosome 17 open reading frame 58 protein-coding 224.5-11 chr14 47398367 47398929 + 0.5 NA intron (NM_001113498, intron 1 of 16) MIRc|SINE|MIR -55402 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 180.5-61 chr5 96062397 96062908 + 0.5 NA intron (NR_130776, intron 1 of 4) ERV3-16A3_I-int|LTR|ERVL -16486 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 165.75-43 chr2 99432346 99432719 + 0.5 NA intron (NR_135649, intron 8 of 22) L2c|LINE|L2 57485 NR_135653 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 157.25-6 chr1 209098278 209098859 + 0.5 NA Intergenic Intergenic 126114 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 147.5-13 chr10 105937358 105937793 + 0.5 NA Intergenic L1MA8|LINE|L1 -117242 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 163-35 chr15 67879567 67879968 + 0.5 NA Intergenic Intergenic -39722 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 147.25-51 chr20 36955957 36956398 + 0.5 NA Intergenic AluJb|SINE|Alu -4334 NM_015474 25939 Hs.580681 NM_015474 ENSG00000101347 SAMHD1 CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 protein-coding 169.75-10 chr1 188644076 188644584 + 0.5 NA Intergenic Intergenic 1200702 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 169-15 chr12 38702081 38702668 + 0.5 NA intron (NM_153634, intron 14 of 19) intron (NM_153634, intron 14 of 19) 203217 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 159-12 chr11 15700671 15701279 + 0.5 NA intron (NM_001293172, intron 1 of 2) intron (NM_001293172, intron 1 of 2) 57090 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 175-34 chr4 167892935 167893408 + 0.5 NA Intergenic Intergenic -199366 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 187.25-16 chr12 44433534 44434181 + 0.5 NA Intergenic L1PA17|LINE|L1 441804 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 160.5-28 chr14 48513318 48513769 + 0.5 NA Intergenic Intergenic -718529 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 181.5-59 chr5 135636106 135636675 + 0.5 NA intron (NM_001349335, intron 3 of 10) intron (NM_001349335, intron 3 of 10) 17545 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 175.75-51 chr4 90672999 90673571 + 0.5 NA intron (NM_207491, intron 6 of 7) intron (NM_207491, intron 6 of 7) 438254 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 175.75-56 chr5 28486447 28487021 + 0.5 NA Intergenic Intergenic -199069 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 149-97 chr8 76932967 76933410 + 0.5 NA Intergenic L2a|LINE|L2 33662 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 162.25-38 chr2 191024691 191025212 + 0.5 NA intron (NR_136318, intron 1 of 2) intron (NR_136318, intron 1 of 2) 3425 NR_136318 105373805 Hs.570280 NR_136318 ENSG00000231858 LOC105373805 - uncharacterized LOC105373805 ncRNA 161.5-18 chr10 102884686 102885111 + 0.5 NA intron (NM_020682, intron 9 of 10) L1MA4|LINE|L1 15428 NM_020682 57412 Hs.720370 NM_020682 ENSG00000214435 AS3MT CYT19 arsenite methyltransferase protein-coding 184-41 chr5 13840206 13840787 + 0.5 NA intron (NM_001369, intron 34 of 78) intron (NM_001369, intron 34 of 78) 103984 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 158-78 chr6 115793598 115794126 + 0.5 NA Intergenic Intergenic -150027 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 175.25-25 chr15 78953166 78953706 + 0.5 NA Intergenic AluJo|SINE|Alu -8338 NM_001319137 1512 Hs.148641 NM_004390 ENSG00000103811 CTSH ACC-4|ACC-5|ACC4|ACC5|CPSB cathepsin H protein-coding 170.5-31 chr19 31936206 31936880 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR -89319 NR_110675 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 174.5-90 chr9 85680052 85680465 + 0.5 NA intron (NM_015239, intron 4 of 25) L1M5|LINE|L1 61771 NM_015239 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 167.5-10 chr1 216609153 216609808 + 0.5 NA intron (NM_001243505, intron 3 of 6) intron (NM_001243505, intron 3 of 6) 113949 NM_001438 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 158.25-73 chr4 36942759 36943210 + 0.5 NA Intergenic Intergenic -58795 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 160.5-85 chr5 27339327 27339763 + 0.5 NA Intergenic L1M2|LINE|L1 -132747 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 152.25-18 chr12 9633862 9634328 + 0.5 NA intron (NR_046448, intron 1 of 4) MER5A1|DNA|hAT-Charlie 676 NR_046448 374443 Hs.569124 NR_002814 ENSG00000256594 LOC374443 - C-type lectin domain family 2 member D pseudogene pseudo 206.25-43 chr9 88703539 88704117 + 0.5 NA Intergenic AluSz6|SINE|Alu 42077 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 188.75-27 chr19 51516304 51516963 + 0.5 NA Intergenic MLT2C1|LTR|ERVL -14833 NM_053003 89858 Hs.249741 NM_033329 ENSG00000254521 SIGLEC12 S2V|SIGLECL1|SLG|Siglec-XII sialic acid binding Ig like lectin 12 (gene/pseudogene) protein-coding 199.5-4 chr11 31096093 31096649 + 0.5 NA intron (NM_001367979, intron 15 of 38) UCON1|Unknown|Unknown -103685 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 245.75-9 chr15 65885153 65885926 + 0.5 NA intron (NM_004663, intron 4 of 4) intron (NM_004663, intron 4 of 4) 16048 NM_001206836 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 148.5-30 chr15 101210736 101211161 + 0.5 NA intron (NM_014918, intron 2 of 2) L1MEg|LINE|L1 41100 NM_014918 22856 Hs.110488 NM_014918 ENSG00000131873 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 151.25-79 chr6 39027061 39027641 + 0.5 NA intron (NM_001371, intron 91 of 91) intron (NM_001371, intron 91 of 91) -21430 NR_136563 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 213.5-7 chr10 43754940 43755537 + 0.5 NA Intergenic L1ME4b|LINE|L1 23587 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 159.25-2 chr1 85119158 85119647 + 0.5 NA intron (NM_001288563, intron 16 of 21) L1MB3|LINE|L1 -14392 NR_039619 100616481 NR_039619 ENSG00000266110 MIR4423 mir-4423 microRNA 4423 ncRNA 170.75-52 chr5 13780248 13780823 + 0.5 NA intron (NM_001369, intron 53 of 78) intron (NM_001369, intron 53 of 78) 163945 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 215-23 chr4 29600423 29601192 + 0.5 NA Intergenic Intergenic 386515 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 223-5 chr11 102484532 102485347 + 0.5 NA intron (NR_135076, intron 1 of 2) MER34-int|LTR|ERV1 17684 NR_135076 102723838 Hs.738066 NR_135076 ENSG00000255482 LOC102723838 - uncharacterized LOC102723838 ncRNA 157-44 chr18 6633566 6634016 + 0.5 NA Intergenic HAL1ME|LINE|L1 -95925 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 221.5-7 chr10 53246374 53247138 + 0.5 NA Intergenic Intergenic -475056 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 179.5-75 chr7 120198109 120198618 + 0.5 NA Intergenic Intergenic -74812 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 165.25-30 chr2 229632637 229633104 + 0.5 NA intron (NM_139072, intron 1 of 12) L1ME4c|LINE|L1 81685 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 254.75-25 chr8 76610532 76611083 + 0.5 NA TTS (NR_024360) TTS (NR_024360) -70440 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 151.5-30 chr15 68031184 68031572 + 0.5 NA Intergenic LTR50|LTR|ERVL -22801 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 157.25-25 chr14 83090738 83091350 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 448412 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 145.75-124 chr8 79417098 79417652 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 85187 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 166.75-20 chr12 105315157 105315782 + 0.5 NA intron (NR_131986, intron 1 of 2) L2c|LINE|L2 11548 NR_131986 105369954 Hs.368938 NR_131986 ENSG00000257642 KCCAT198 - renal clear cell carcinoma-associated transcript 198 ncRNA 147.25-45 chr2 49660411 49660944 + 0.5 NA Intergenic Intergenic 313526 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 178-23 chr14 63316404 63316796 + 0.5 NA intron (NM_145171, intron 2 of 2) intron (NM_145171, intron 2 of 2) 2335 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 182.25-24 chr2 83797720 83798215 + 0.5 NA Intergenic L1MB7|LINE|L1 275153 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 197.5-45 chr4 33724080 33724732 + 0.5 NA Intergenic (ATTGA)n|Simple_repeat|Simple_repeat 315487 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 172-34 chr2 33868524 33869006 + 0.5 NA intron (NR_126403, intron 2 of 5) L1MB8|LINE|L1 -140548 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 151.5-47 chr2 14951138 14951540 + 0.5 NA Intergenic Intergenic 318622 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 209.75-10 chr12 46003727 46004427 + 0.5 NA Intergenic Intergenic -13503 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 146.5-11 chr10 61420436 61420905 + 0.5 NA intron (NR_134508, intron 4 of 6) L1ME1|LINE|L1 -31969 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 146.75-37 chr16 73461040 73461422 + 0.5 NA Intergenic L1MD1|LINE|L1 74426 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 158.5-18 chr13 28500388 28500978 + 0.5 NA Intergenic Intergenic -5555 NM_001160030 2321 Hs.594454 NM_002019 ENSG00000102755 FLT1 FLT|FLT-1|VEGFR-1|VEGFR1 fms related tyrosine kinase 1 protein-coding 166.25-62 chr7 26780407 26780909 + 0.5 NA intron (NM_003930, intron 4 of 12) MER58B|DNA|hAT-Charlie 77065 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 238.5-34 chr6 106712496 106712992 + 0.5 NA Intergenic L1MEj|LINE|L1 17259 NR_149100 105377926 Hs.635821 NR_149100 ENSG00000229654 LINC02526 - long intergenic non-protein coding RNA 2526 ncRNA 159-89 chr9 93553171 93553623 + 0.5 NA intron (NM_001286722, intron 12 of 17) intron (NM_001286722, intron 12 of 17) -23187 NM_005392 5253 Hs.211441 NM_005392 ENSG00000197724 PHF2 CENP-35|GRC5|JHDM1E|KDM7C PHD finger protein 2 protein-coding 204.75-7 chr10 81692949 81693496 + 0.5 NA Intergenic L1PB1|LINE|L1 -181972 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 178-52 chr5 21724387 21725075 + 0.5 NA Intergenic Intergenic -159723 NR_132787 106635539 NR_132787 SNORA105A - small nucleolar RNA, H/ACA box 105A snoRNA 298.75 chr1 194665514 194666365 + 0.5 NA Intergenic Intergenic 1361194 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 146.5-43 chr18 9414335 9414750 + 0.5 NA Intergenic Intergenic -60971 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 170.75-42 chr3 37114158 37114580 + 0.5 NA intron (NM_001348297, intron 6 of 23) intron (NM_001348297, intron 6 of 23) 60213 NM_006309 9209 Hs.740522 NM_006309 ENSG00000093167 LRRFIP2 HUFI-2 LRR binding FLII interacting protein 2 protein-coding 163.25-3 chr1 80622830 80623437 + 0.5 NA intron (NR_125940, intron 2 of 3) intron (NR_125940, intron 2 of 3) -18154 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 158-6 chr1 207630616 207631119 + 0.5 NA intron (NM_000573, intron 38 of 38) intron (NM_000573, intron 38 of 38) -14266 NM_175710 1379 Hs.628568 NM_175710 ENSG00000197721 CR1L - complement C3b/C4b receptor 1 like protein-coding 157.75-91 chr5 106825137 106825467 + 0.5 NA intron (NR_104671, intron 2 of 3) intron (NR_104671, intron 2 of 3) 185712 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 218-10 chr14 45050913 45051692 + 0.5 NA intron (NR_131765, intron 14 of 19) intron (NR_131765, intron 14 of 19) -32814 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 217-25 chr6 149680825 149681516 + 0.5 NA intron (NM_001350340, intron 5 of 8) intron (NM_001350340, intron 5 of 8) -32366 NM_001204076 11104 Hs.450175 NM_007044 ENSG00000186625 KATNA1 - katanin catalytic subunit A1 protein-coding 147-62 chr3 41040044 41040616 + 0.5 NA Intergenic Intergenic -159175 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 169.25-10 chr13 68175464 68175896 + 0.5 NA Intergenic Intergenic 709645 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 154.5-63 chr3 156951139 156951516 + 0.5 NA intron (NM_001004316, intron 6 of 12) L1PREC2|LINE|L1 124974 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 172.75-48 chr4 94612335 94612955 + 0.5 NA intron (NM_001256426, intron 11 of 16) intron (NM_001256426, intron 11 of 16) 144888 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 161.5-81 chr5 161182211 161182658 + 0.5 NA Intergenic L1MA3|LINE|L1 -243808 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 160.25-18 chr12 62800771 62801380 + 0.5 NA intron (NM_020700, intron 3 of 9) intron (NM_020700, intron 3 of 9) 134075 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 153-83 chr7 17063108 17063580 + 0.5 NA Intergenic L2a|LINE|L2 -181361 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 179-11 chr12 109167253 109167611 + 0.5 NA intron (NM_001093, intron 3 of 52) AluJb|SINE|Alu 50845 NM_001093 32 Hs.234898 NM_001093 ENSG00000076555 ACACB ACC2|ACCB|HACC275 acetyl-CoA carboxylase beta protein-coding 173.5-40 chr20 10975811 10976393 + 0.5 NA Intergenic Intergenic -50442 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 238.25-25 chr5 24093942 24094521 + 0.5 NA intron (NR_131245, intron 4 of 4) MLT2A2|LTR|ERVL 142883 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 210.75-6 chr10 69185545 69186069 + 0.5 NA intron (NR_136627, intron 2 of 15) intron (NR_136627, intron 2 of 15) 5573 NR_136626 6832 Hs.106469 NM_003171 ENSG00000156502 SUPV3L1 SUV3 Suv3 like RNA helicase protein-coding 217.25-38 chr5 169342681 169343241 + 0.5 NA Intergenic Intergenic -41822 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 167-49 chr20 55110526 55111114 + 0.5 NA Intergenic L1MCa|LINE|L1 -312223 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 157.75-43 chr18 37088021 37088550 + 0.5 NA intron (NR_136303, intron 8 of 13) HAL1|LINE|L1 -164471 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 156.25-25 chr15 46335211 46335791 + 0.5 NA Intergenic L1PA17|LINE|L1 630306 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 197-18 chr2 52777611 52778185 + 0.5 NA Intergenic Intergenic -75283 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 197 chr1 94500423 94501088 + 0.5 NA intron (NM_002858, intron 20 of 22) intron (NM_002858, intron 20 of 22) 41004 NM_001993 2152 Hs.62192 NM_001993 ENSG00000117525 F3 CD142|TF|TFA coagulation factor III, tissue factor protein-coding 167-73 chr5 125542439 125542918 + 0.5 NA intron (NR_109887, intron 3 of 3) L1MD1|LINE|L1 49417 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 159.5-39 chr2 27871379 27871740 + 0.5 NA intron (NM_001287580, intron 1 of 8) Charlie3|DNA|hAT-Charlie -17150 NM_001329112 9577 Hs.258314 NM_004899 ENSG00000158019 BABAM2 BRCC4|BRCC45|BRE BRISC and BRCA1 A complex member 2 protein-coding 164.75-10 chr10 107377739 107378219 + 0.5 NA Intergenic ERVL-B4-int|LTR|ERVL -213273 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 150.75-73 chr5 32955521 32955990 + 0.5 NA intron (NR_033832, intron 3 of 5) intron (NR_033832, intron 3 of 5) 8312 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 169.75-17 chr10 114666284 114666662 + 0.5 NA intron (NM_001322886, intron 1 of 20) intron (NM_001322886, intron 1 of 20) -8198 NM_002313 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 163.75-47 chr4 33029750 33030236 + 0.5 NA Intergenic Intergenic 678955 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 176.25-12 chr11 5296519 5296948 + 0.5 NA Intergenic Intergenic 5213 NM_033179 79339 Hs.679499 NM_033179 ENSG00000183251 OR51B4 HOR5'Beta1 olfactory receptor family 51 subfamily B member 4 protein-coding 148.5-47 chr2 163565960 163566435 + 0.5 NA Intergenic Intergenic 169811 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 193-35 chr3 134211012 134211696 + 0.5 NA intron (NM_001005861, intron 3 of 14) intron (NM_001005861, intron 3 of 14) 39390 NM_002958 6259 Hs.654562 NM_002958 ENSG00000163785 RYK D3S3195|JTK5|JTK5A|RYK1 receptor like tyrosine kinase protein-coding 160-66 chr5 51983964 51984475 + 0.5 NA Intergenic Intergenic -23812 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 192.5-43 chr4 63585623 63586312 + 0.5 NA Intergenic Intergenic 823483 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 182.75-60 chr6 52463347 52464063 + 0.5 NA intron (NR_033327, intron 4 of 9) intron (NR_033327, intron 4 of 9) 42697 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 260.25-17 chr3 197171023 197171944 + 0.5 NA intron (NM_001290983, intron 5 of 25) intron (NM_001290983, intron 5 of 25) 12389 NM_001366222 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 147-102 chr6 131347609 131348023 + 0.5 NA Intergenic Intergenic 97412 NM_004842 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 204.75-39 chr3 181612298 181612892 + 0.5 NA intron (NR_075090, intron 2 of 2) intron (NR_075090, intron 2 of 2) 2261 NR_004053 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 170-36 chr20 32843719 32844373 + 0.5 NA intron (NM_012325, intron 5 of 6) AluSx1|SINE|Alu -14877 NM_001143967 388795 NM_001143967 ENSG00000215529 EFCAB8 - EF-hand calcium binding domain 8 protein-coding 154.5-97 chr8 137438797 137439200 + 0.5 NA Intergenic Intergenic -25410 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 153.25-40 chr14 74098087 74098444 + 0.5 NA intron (NM_001024674, intron 4 of 5) AluSz|SINE|Alu 13312 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 167-85 chr8 54205146 54205516 + 0.5 NA Intergenic L2a|LINE|L2 70090 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 162.5-13 chr10 27519128 27519665 + 0.5 NA intron (NR_046172, intron 2 of 5) L1M4|LINE|L1 15092 NM_001256411 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 195.5-29 chr2 152418699 152419411 + 0.5 NA intron (NM_052905, intron 1 of 25) L1MB4|LINE|L1 83881 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 161-8 chr1 241937822 241938299 + 0.5 NA Intergenic AluSp|SINE|Alu -19707 NM_001290693 441925 Hs.731347 NM_001290693 ENSG00000196289 BECN2 BECN1L1|BECN1P1 beclin 2 protein-coding 164.75-33 chr18 54418021 54418500 + 0.5 NA Intergenic Intergenic 60343 NR_110234 162681 Hs.208701 NM_173529 ENSG00000166845 C18orf54 LAS2 chromosome 18 open reading frame 54 protein-coding 158.25-55 chr2 195276746 195277188 + 0.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -379991 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 171.5-85 chr6 68562614 68563292 + 0.5 NA Intergenic Intergenic 71371 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 249.25-19 chr7 25365457 25365990 + 0.5 NA Intergenic LTR33B|LTR|ERVL -137237 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 156.25-103 chr9 34196266 34196717 + 0.5 NA intron (NM_001171204, intron 2 of 7) AluSq2|SINE|Alu 17448 NM_016525 51271 Hs.268963 NM_016525 ENSG00000165006 UBAP1 NAG20|SPG80|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 174.25-29 chr2 96975445 96976075 + 0.5 NA intron (NM_001122646, intron 1 of 16) intron (NM_001122646, intron 1 of 16) 10820 NM_001122646 51252 Hs.107922 NM_016490 ENSG00000168754 FAM178B - family with sequence similarity 178 member B protein-coding 231-10 chr18 3956072 3956759 + 0.5 NA intron (NM_001242761, intron 3 of 11) AluY|SINE|Alu -5938 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 232-10 chr12 10354166 10354861 + 0.5 NA Intergenic L1PA10|LINE|L1 -9256 NR_120430 101928100 Hs.638425 NR_120430 ENSG00000245648 LOC101928100 - uncharacterized LOC101928100 ncRNA 175.5-30 chr15 33478716 33479192 + 0.5 NA intron (NM_001243996, intron 2 of 102) intron (NM_001243996, intron 2 of 102) 167987 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 250-6 chr14 69634310 69634961 + 0.5 NA intron (NM_014734, intron 1 of 5) intron (NM_014734, intron 1 of 5) 23039 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 222.25-42 chr7 27619213 27620026 + 0.5 NA intron (NR_122122, intron 2 of 2) L1M2|LINE|L1 3645 NR_122122 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 184.25-26 chr18 80140313 80140811 + 0.5 NA TTS (NM_014913) TTS (NM_014913) -7362 NR_028340 100130522 Hs.352602 NM_001145731 ENSG00000267270 PARD6G-AS1 - PARD6G antisense RNA 1 ncRNA 185-59 chr5 64739507 64740116 + 0.5 NA intron (NM_173829, intron 3 of 4) intron (NM_173829, intron 3 of 4) 28880 NM_173829 285672 Hs.69504 NM_173829 ENSG00000153006 SREK1IP1 P18SRP|SFRS12IP1 SREK1 interacting protein 1 protein-coding 146.5-68 chr3 28188460 28189020 + 0.5 NA Intergenic Tigger2|DNA|TcMar-Tigger -52879 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 191.75-47 chr4 182697813 182698536 + 0.5 NA intron (NM_001080477, intron 12 of 27) intron (NM_001080477, intron 12 of 27) 219079 NM_001351747 1635 Hs.183850 NM_001921 ENSG00000129187 DCTD - dCMP deaminase protein-coding 179.25-66 chr6 6659202 6659765 + 0.5 NA Intergenic Intergenic -36657 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 162.25-11 chr11 104992610 104993230 + 0.5 NA Intergenic HAL1ME|LINE|L1 -24346 NM_033306 837 Hs.138378 NM_001225 ENSG00000196954 CASP4 ICE(rel)II|ICEREL-II|ICH-2|Mih1|Mih1/TX|TX caspase 4 protein-coding 208.5-34 chr2 108192084 108192774 + 0.5 NA intron (NR_131251, intron 1 of 4) L1ME3A|LINE|L1 25412 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 159.75-11 chr10 32099980 32100392 + 0.5 NA Intergenic Intergenic -43761 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 170-56 chr7 25791920 25792441 + 0.5 NA Intergenic Intergenic -2061 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 164.75 chr1 13713377 13714025 + 0.5 NA intron (NM_012231, intron 1 of 9) intron (NM_012231, intron 1 of 9) 8846 NM_012231 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 170.75-21 chr14 73630121 73630600 + 0.5 NA Intergenic MER83|LTR|ERV1 13516 NM_001037162 641372 Hs.122038 NM_001037162 ENSG00000205669 ACOT6 C14orf42|c14_5530 acyl-CoA thioesterase 6 protein-coding 180.25-71 chr7 117563087 117563596 + 0.5 NA intron (NR_149084, intron 1 of 2) intron (NR_149084, intron 1 of 2) 1335 NR_149084 111082987 Hs.583149 NR_149084 ENSG00000232661 CFTR-AS1 BGas CFTR antisense RNA 1 ncRNA 189.75-38 chr2 109136921 109137547 + 0.5 NA intron (NM_001099289, intron 1 of 9) intron (NM_001099289, intron 1 of 9) 4354 NR_036223 100422863 NR_036223 ENSG00000264934 MIR4265 - microRNA 4265 ncRNA 212-44 chrX 99876047 99876772 + 0.5 NA Intergenic Intergenic 533864 NM_001105243 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 164.75-32 chr18 53963288 53963734 + 0.5 NA Intergenic Intergenic 258901 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 176-14 chr14 44431822 44432218 + 0.5 NA Intergenic Intergenic 75263 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 210.25-30 chr4 96725443 96725980 + 0.5 NA intron (NR_147149, intron 3 of 3) MLT1C|LTR|ERVL-MaLR 415008 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 174.75-45 chr4 63371567 63372045 + 0.5 NA Intergenic L1MCa|LINE|L1 1037644 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 179.25-27 chr13 79232931 79233552 + 0.5 NA Intergenic Intergenic 172980 NM_001286632 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 174.25-74 chr8 126019010 126019395 + 0.5 NA Intergenic Intergenic -68005 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 168.25-71 chr6 154748083 154748577 + 0.5 NA intron (NM_001286189, intron 3 of 21) intron (NM_001286189, intron 3 of 21) 14952 NM_001286189 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 155.75-28 chr13 92893394 92894014 + 0.5 NA Intergenic L1MC4|LINE|L1 -151637 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 197.5-41 chr3 86280075 86280841 + 0.5 NA Intergenic L1PB2|LINE|L1 -201485 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 207.75-41 chr6 163946984 163947651 + 0.5 NA Intergenic Intergenic -275833 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 158.5-89 chr6 55249462 55249813 + 0.5 NA intron (NM_001526, intron 3 of 7) intron (NM_001526, intron 3 of 7) -77832 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 198.5-60 chrX 77212651 77213218 + 0.5 NA Intergenic L1PA13|LINE|L1 -198402 NR_110402 101928469 Hs.640805 NR_110400 ENSG00000280870 MIR325HG MIR384HG MIR325 host gene ncRNA 171.5-20 chr11 37190713 37191200 + 0.5 NA Intergenic Intergenic -592677 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 151.75-67 chr4 42525169 42525654 + 0.5 NA intron (NM_001105529, intron 19 of 35) intron (NM_001105529, intron 19 of 35) 127923 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 244.25-28 chrUn_KI270522v1 704 1461 + 0.5 NA NA ALR/Alpha|Satellite|centr NA NA 187.75-48 chr3 87853054 87853513 + 0.5 NA intron (NM_001322210, intron 2 of 2) L1PA13|LINE|L1 60577 NM_001322208 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 158.75-28 chr14 101868616 101869181 + 0.5 NA intron (NM_001161725, intron 4 of 15) AluSc|SINE|Alu 59035 NM_001352912 5527 Hs.368264 NM_002719 ENSG00000078304 PPP2R5C B56G|B56gamma|PR61G protein phosphatase 2 regulatory subunit B'gamma protein-coding 199.5-28 chr22 27190398 27190975 + 0.5 NA Intergenic AluSx|SINE|Alu 3170 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 164.5-22 chr15 79495232 79495724 + 0.5 NA Intergenic Intergenic 62962 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 178.5-33 chr17 57513927 57514571 + 0.5 NA intron (NM_001322250, intron 6 of 13) intron (NM_001322250, intron 6 of 13) 9348 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 155.25-4 chr1 162884153 162884666 + 0.5 NA Intergenic MER5B|DNA|hAT-Charlie -15594 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 154-37 chr17 33236648 33237174 + 0.5 NA intron (NM_001094, intron 1 of 9) MLT1C|LTR|ERVL-MaLR 56077 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 158.75-78 chr7 87805779 87806321 + 0.5 NA intron (NM_001134406, intron 8 of 9) intron (NM_001134406, intron 8 of 9) 70310 NM_018843 55972 Hs.208414 NM_018843 ENSG00000075303 SLC25A40 MCFP solute carrier family 25 member 40 protein-coding 234-2 chr10 52553163 52553920 + 0.5 NA Intergenic L2|LINE|L2 -83008 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 169.25-12 chr14 53255480 53255868 + 0.5 NA Intergenic MER4-int|LTR|ERV1 102320 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 155-85 chr6 43540246 43540710 + 0.5 NA intron (NR_144392, intron 21 of 32) AluYf1|SINE|Alu 23389 NM_203290 9533 Hs.743509 NM_004875 ENSG00000171453 POLR1C AC40|HLD11|RPA39|RPA40|RPA5|RPAC1|RPC40|TCS3 RNA polymerase I and III subunit C protein-coding 188.5-77 chrX 47235513 47236098 + 0.5 NA intron (NM_001371072, intron 1 of 20) intron (NM_001371072, intron 1 of 20) 2796 NM_001371072 209-4 chr1 187519279 187519933 + 0.5 NA Intergenic Intergenic 75978 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 155.5-2 chr1 50128134 50128616 + 0.5 NA intron (NM_001324217, intron 1 of 3) intron (NM_001324217, intron 1 of 3) 18542 NM_001324215 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 194.75-11 chr14 51489603 51490034 + 0.5 NA intron (NM_001042481, intron 1 of 14) intron (NM_001042481, intron 1 of 14) 690 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 151.75-18 chr11 84981892 84982400 + 0.5 NA intron (NM_001351274, intron 5 of 26) L2c|LINE|L2 -58725 NM_001300983 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 186.25-53 chr6 49916256 49916943 + 0.5 NA Intergenic Intergenic 32845 NR_163261 403339 Hs.745543 NM_001166478 ENSG00000214643 DEFB133 - defensin beta 133 pseudo 247.5-14 chr13 84266023 84266774 + 0.5 NA intron (NR_046871, intron 3 of 6) intron (NR_046871, intron 3 of 6) 125796 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 156.5-97 chr6 73288089 73288455 + 0.5 NA intron (NR_027005, intron 3 of 4) ERV3-16A3_I-int|LTR|ERVL 21887 NM_001251874 80759 Hs.433062 NM_030568 ENSG00000135314 KHDC1 C6orf147|C6orf148|Em:AC019205.8|KHDC1L|NDG1|bA257K9.4 KH domain containing 1 protein-coding 195.75-19 chr13 69261290 69261901 + 0.5 NA intron (NR_125752, intron 1 of 3) L1PA13|LINE|L1 39249 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 147.25-38 chr16 48112958 48113284 + 0.5 NA intron (NM_033226, intron 13 of 28) intron (NM_033226, intron 13 of 28) 33649 NM_033226 94160 Hs.410111 NM_033226 ENSG00000140798 ABCC12 MRP9 ATP binding cassette subfamily C member 12 protein-coding 167.5-41 chr2 76253664 76254320 + 0.5 NA Intergenic L1MA9|LINE|L1 -543077 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 151-47 chr2 196190051 196190636 + 0.5 NA Intergenic L1MC3|LINE|L1 -18765 NM_004226 9262 Hs.88297 NM_004226 ENSG00000081320 STK17B DRAK2 serine/threonine kinase 17b protein-coding 182-41 chr4 86007484 86008007 + 0.5 NA Intergenic L2a|LINE|L2 77729 NM_031305 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 152.75-3 chr1 50768884 50769355 + 0.5 NA intron (NM_007051, intron 4 of 18) L1PA15|LINE|L1 191148 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 153.25-58 chr2 49832482 49832877 + 0.5 NA Intergenic Intergenic 141524 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 270.25-17 chr8 78219727 78220588 + 0.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR -296183 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 152.25-9 chr1 180880374 180880911 + 0.5 NA intron (NR_137330, intron 12 of 12) MIR|SINE|MIR -32255 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 183-59 chr9 8209555 8209983 + 0.5 NA Intergenic Intergenic -409991 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 240.5-13 chr2 42150511 42151287 + 0.5 NA intron (NR_110584, intron 1 of 3) L1MB7|LINE|L1 -18454 NM_001145076 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 EMAP like 4 protein-coding 158-64 chr5 17953062 17953581 + 0.5 NA Intergenic Charlie11|DNA|hAT-Charlie 146047 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 148.5-74 chr4 95612043 95612550 + 0.5 NA Intergenic Intergenic -63323 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 229.25-17 chr21 14278524 14279199 + 0.5 NA intron (NR_003087, intron 1 of 5) intron (NR_003087, intron 1 of 5) 5062 NR_003088 150000 Hs.366575 NM_138726 ENSG00000243064 ABCC13 ABCC13P|C21orf73|PRED6 ATP binding cassette subfamily C member 13 (pseudogene) pseudo 155.5-21 chr12 38888241 38888751 + 0.5 NA intron (NM_153634, intron 1 of 19) intron (NM_153634, intron 1 of 19) 17095 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 148.75-20 chr11 106007027 106007430 + 0.5 NA TTS (NM_032424) TTS (NM_032424) 15012 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 180.75 chr1 9946158 9946753 + 0.5 NA intron (NM_001297779, intron 1 of 4) intron (NM_001297779, intron 1 of 4) 2980 NM_022787 64802 Hs.633762 NM_022787 ENSG00000173614 NMNAT1 LCA9|NMNAT|PNAT1 nicotinamide nucleotide adenylyltransferase 1 protein-coding 147.25-52 chr20 62125153 62125647 + 0.5 NA intron (NM_144703, intron 2 of 8) intron (NM_144703, intron 2 of 8) 2925 NM_144703 149986 Hs.105379 NM_144703 ENSG00000149657 LSM14B C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3 LSM family member 14B protein-coding 206.25-37 chr6 139938290 139938982 + 0.5 NA Intergenic Intergenic -37683 NR_121622 100507477 Hs.179213 NR_121622 ENSG00000236013 LOC100507477 - uncharacterized LOC100507477 ncRNA 212-22 chr2 212835676 212836291 + 0.5 NA Intergenic L1MC1|LINE|L1 40652 NR_131942 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 183.5-33 chr2 146860516 146861067 + 0.5 NA Intergenic L1MEd|LINE|L1 273734 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 161.75-97 chr9 17528203 17528554 + 0.5 NA Intergenic L1MC3|LINE|L1 -50688 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 157-85 chr6 154929816 154930362 + 0.5 NA Intergenic L1MEf|LINE|L1 76729 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 164-85 chr8 131369725 131370158 + 0.5 NA Intergenic LTR40A1|LTR|ERVL -329032 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 150.25-81 chr5 43564810 43565259 + 0.5 NA Intergenic MER41C|LTR|ERV1 -7615 NM_183323 10605 Hs.482038 NM_006451 ENSG00000172239 PAIP1 - poly(A) binding protein interacting protein 1 protein-coding 168.75-27 chr16 60882895 60883282 + 0.5 NA Intergenic Intergenic 172678 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 149.25-27 chr14 49459275 49459715 + 0.5 NA Intergenic Intergenic 126885 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 173-60 chr4 166492070 166492597 + 0.5 NA Intergenic Intergenic 619096 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 219.25-3 chr10 17771724 17772546 + 0.5 NA intron (NM_001098844, intron 2 of 3) intron (NM_001098844, intron 2 of 3) 19934 NM_001098844 653567 Hs.564139 NM_001013629 ENSG00000148483 TMEM236 FAM23A|FAM23B|bA162I21.2|bA16O1.2 transmembrane protein 236 protein-coding 211.5-16 chr14 46729039 46729702 + 0.5 NA Intergenic L1ME4a|LINE|L1 -77589 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 165.75-53 chr20 17394020 17394500 + 0.5 NA intron (NM_002594, intron 5 of 11) intron (NM_002594, intron 5 of 11) 137119 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 152.25-35 chr17 76039057 76039659 + 0.5 NA non-coding (NR_048541, exon 15 of 15) non-coding (NR_048541, exon 15 of 15) -12052 NM_001320747 2125 Hs.500635 NM_001988 ENSG00000167880 EVPL EVPK envoplakin protein-coding 157.5-12 chr11 21648432 21648939 + 0.5 NA Intergenic Intergenic -544400 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 152.5 chr1 88186762 88187351 + 0.5 NA Intergenic Intergenic -497088 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 161.75-100 chr9 36347245 36347821 + 0.5 NA intron (NM_194328, intron 9 of 11) Tigger1|DNA|TcMar-Tigger 52736 NM_194329 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 163-11 chr10 81963715 81964154 + 0.5 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 86247 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 168-42 chr20 56024138 56024743 + 0.5 NA Intergenic L2b|LINE|L2 -18921 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 168.5-30 chr14 103730050 103730568 + 0.5 NA intron (NM_001198953, intron 6 of 7) intron (NM_001198953, intron 6 of 7) 14565 NM_001198953 79038 Hs.592322 NM_024071 ENSG00000100711 ZFYVE21 HCVP7TP1|ZF21 zinc finger FYVE-type containing 21 protein-coding 195.5-27 chr2 14466687 14467343 + 0.5 NA Intergenic Intergenic -66057 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 170-40 chr3 86494542 86495046 + 0.5 NA intron (NR_135563, intron 1 of 1) intron (NR_135563, intron 1 of 1) 12851 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 176.25-5 chr1 239814388 239814997 + 0.5 NA intron (NM_000740, intron 3 of 4) intron (NM_000740, intron 3 of 4) 85180 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 168.75-100 chr8 85889776 85890243 + 0.5 NA Intergenic Intergenic -62067 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 172-40 chr2 116210770 116211303 + 0.5 NA Intergenic Intergenic 867221 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 148.75-97 chr7 111697670 111698073 + 0.5 NA Intergenic Intergenic -110634 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 156-8 chr1 235902402 235903017 + 0.5 NA Intergenic Intergenic -18996 NR_102436 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 155-9 chr10 29639513 29639924 + 0.5 NA intron (NM_001323599, intron 3 of 38) AluSq2|SINE|Alu -4747 NM_021738 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 170.75-71 chr8 96929827 96930365 + 0.5 NA intron (NM_016134, intron 4 of 7) intron (NM_016134, intron 4 of 7) 284854 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 162.75-78 chr7 34771718 34772276 + 0.5 NA intron (NR_015356, intron 1 of 4) L1MD2|LINE|L1 -13725 NR_033664 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 283.25-8 chr7 19700900 19701911 + 0.5 NA intron (NM_001002926, intron 2 of 3) L1MC2|LINE|L1 4031 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 147.5-105 chr8 97212036 97212404 + 0.5 NA intron (NR_125390, intron 2 of 2) HSMAR2|DNA|TcMar-Mariner 65708 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 164.75-46 chr2 154985916 154986463 + 0.5 NA Intergenic Intergenic 287494 NM_002239 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 150.5-21 chr10 65673751 65674163 + 0.5 NA intron (NR_120647, intron 3 of 5) intron (NR_120647, intron 3 of 5) 102532 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 155.75-92 chr6 109072889 109073475 + 0.5 NA intron (NM_014454, intron 1 of 9) intron (NM_014454, intron 1 of 9) -21440 NR_146888 285753 Hs.632616 NM_173830 ENSG00000183137 CEP57L1 C6orf182|bA487F23.2|cep57R centrosomal protein 57 like 1 protein-coding 221.25 chr1 61187106 61187917 + 0.5 NA intron (NM_001134673, intron 2 of 10) intron (NM_001134673, intron 2 of 10) 66007 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 165.25 chr1 89833757 89834347 + 0.5 NA intron (NM_018103, intron 1 of 2) intron (NM_018103, intron 1 of 2) 12113 NM_018103 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 VRAC subunit D protein-coding 186.25-46 chr5 3574677 3575094 + 0.5 NA Intergenic Intergenic -20947 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 156.25-108 chr9 130274182 130274683 + 0.5 NA intron (NM_001291815, intron 1 of 97) L1MC|LINE|L1 8672 NM_001291815 256158 Hs.32194 NM_144655 ENSG00000148357 HMCN2 - hemicentin 2 protein-coding 195.5-76 chr9 118327762 118328266 + 0.5 NA Intergenic MER20|DNA|hAT-Charlie -351657 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 158-62 chr4 167648908 167649488 + 0.5 NA Intergenic (TAA)n|Simple_repeat|Simple_repeat -414608 NM_001204354 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 156.25-40 chr2 72649048 72649622 + 0.5 NA intron (NR_135774, intron 6 of 19) L1MA3|LINE|L1 176698 NM_001321730 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 147.25-53 chr21 14874554 14875092 + 0.5 NA intron (NR_146322, intron 1 of 3) intron (NR_146322, intron 1 of 3) 43845 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 228.5-39 chr4 63788322 63789017 + 0.5 NA Intergenic L2|LINE|L2 620781 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 155.25-80 chr7 3958113 3958510 + 0.5 NA intron (NM_152744, intron 7 of 44) intron (NM_152744, intron 7 of 44) -171374 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 149-5 chr1 203237047 203237508 + 0.5 NA Intergenic L2a|LINE|L2 -7604 NR_045784 1118 Hs.201688 NM_003465 ENSG00000133063 CHIT1 CHI3|CHIT|CHITD chitinase 1 protein-coding 167.25-68 chr6 48037252 48037697 + 0.5 NA intron (NM_207499, intron 1 of 2) intron (NM_207499, intron 1 of 2) 31215 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 150.25-56 chr2 194332591 194333011 + 0.5 NA Intergenic Intergenic -11468 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 179.25-32 chr14 65516285 65516931 + 0.5 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) 45506 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 214.75 chr1 67709812 67710625 + 0.5 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 25017 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 173-13 chr10 74943896 74944358 + 0.5 NA intron (NM_001370144, intron 3 of 15) LTR16A|LTR|ERVL 31341 NR_134476 101929165 Hs.670533 NR_134476 LOC101929165 - uncharacterized LOC101929165 ncRNA 188.75-61 chr7 83950522 83950946 + 0.5 NA Intergenic Intergenic 244055 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 149.5-3 chr1 165917339 165917764 + 0.5 NA Intergenic AluJr|SINE|Alu 9630 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 150.75-51 chr20 56083172 56083670 + 0.5 NA Intergenic L1MEc|LINE|L1 -77902 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 160.5-90 chr5 67436340 67436838 + 0.5 NA Intergenic Intergenic 210200 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 148.25-103 chrX 53740991 53741427 + 0.5 NA Intergenic AluSq|SINE|Alu -54490 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 protein-coding 167.75-74 chr5 108982295 108982837 + 0.5 NA intron (NR_146155, intron 13 of 19) intron (NR_146155, intron 13 of 19) 57960 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 190.25-12 chr14 52318367 52318942 + 0.5 NA intron (NM_000956, intron 1 of 1) intron (NM_000956, intron 1 of 1) 4342 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 164.25-62 chr3 185931182 185931594 + 0.5 NA intron (NM_004593, intron 1 of 8) intron (NM_004593, intron 1 of 8) 6626 NM_001243879 6434 Hs.533122 NM_004593 ENSG00000136527 TRA2B Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B transformer 2 beta homolog protein-coding 174.75-18 chr12 41398670 41399056 + 0.5 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) -38876 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 160.25-35 chr2 142419237 142419861 + 0.5 NA Intergenic Intergenic -287848 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 152.25-70 chr4 70144818 70145419 + 0.5 NA intron (NR_033311, intron 7 of 7) L1PB1|LINE|L1 -9119 NM_214711 401137 Hs.518795 NM_214711 ENSG00000187533 PRR27 C4orf40 proline rich 27 protein-coding 181.25-46 chr4 123327320 123327989 + 0.5 NA Intergenic Intergenic -69141 NM_199327 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 234.25-2 chr12 64265414 64266027 + 0.5 NA 3' UTR (NM_001170633, exon 13 of 13) 3' UTR (NM_001170633, exon 13 of 13) -43424 NM_152440 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 187.25-71 chrX 88818978 88819528 + 0.5 NA Intergenic L1PA15|LINE|L1 72028 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 149.75-4 chr1 82523846 82524329 + 0.5 NA Intergenic Intergenic -379096 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 189.5-49 chr4 171116387 171117065 + 0.5 NA Intergenic Intergenic -69458 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 177.75-31 chr2 139187456 139188031 + 0.5 NA Intergenic L1MA8|LINE|L1 290419 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 146.25-102 chr9 17550724 17551105 + 0.5 NA Intergenic (GT)n|Simple_repeat|Simple_repeat -28152 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 167.75-98 chr8 137696949 137697437 + 0.5 NA Intergenic Intergenic -283605 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 203.75-52 chr8 138633411 138634054 + 0.5 NA intron (NM_152888, intron 49 of 64) Tigger18a|DNA|TcMar-Tigger -136002 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 170.75-57 chr5 110057486 110058005 + 0.5 NA Intergenic MIR|SINE|MIR 174563 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 163.75-29 chr19 48518525 48519049 + 0.5 NA Intergenic AluSz6|SINE|Alu -5598 NM_001080434 114783 Hs.207426 NM_001080434 ENSG00000142235 LMTK3 LMR3|PPP1R101|TYKLM3 lemur tyrosine kinase 3 protein-coding 155.75-59 chr2 183033817 183034321 + 0.5 NA intron (NM_205842, intron 1 of 31) intron (NM_205842, intron 1 of 31) 4388 NM_205842 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 150.25-26 chr12 44291662 44292255 + 0.5 NA intron (NM_001286213, intron 4 of 6) L1MA9|LINE|L1 455877 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 158-85 chr7 21834048 21834455 + 0.5 NA intron (NM_001277115, intron 65 of 81) L1MA5|LINE|L1 111648 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 201-6 chr10 53384638 53385332 + 0.5 NA Intergenic Intergenic -613285 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 184.75-20 chr12 61113469 61114139 + 0.5 NA Intergenic L1MC2|LINE|L1 1079035 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 155.5-71 chr4 36620207 36620625 + 0.5 NA intron (NR_149124, intron 1 of 4) L1MB1|LINE|L1 21484 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 228 chr1 114107613 114108267 + 0.5 NA intron (NM_001366223, intron 3 of 7) intron (NM_001366223, intron 3 of 7) 44500 NM_205848 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 199-14 chr18 62419895 62420493 + 0.5 NA Intergenic Intergenic 94884 NM_003839 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 322-2 chr9 31044948 31045711 + 0.5 NA Intergenic Intergenic 336161 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 186-51 chr8 9030960 9031487 + 0.5 NA 3' UTR (NM_001354635, exon 7 of 7).2 3' UTR (NM_001354635, exon 7 of 7).2 -17222 NR_039804 100616350 NR_039804 ENSG00000263407 MIR4660 - microRNA 4660 ncRNA 159-30 chr19 28486820 28487388 + 0.5 NA intron (NR_110759, intron 5 of 9) L2a|LINE|L2 -119584 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 211.25-36 chr5 44733414 44733953 + 0.5 NA Intergenic AluSq2|SINE|Alu 75110 NR_109864 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 212.75-6 chr13 49579412 49580097 + 0.5 NA intron (NM_001352502, intron 1 of 11) intron (NM_001352502, intron 1 of 11) 5804 NM_001352500 55213 Hs.508021 NM_018191 ENSG00000136144 RCBTB1 CLLD7|CLLL7|GLP|RDEOA RCC1 and BTB domain containing protein 1 protein-coding 166.5-50 chr3 70689266 70689881 + 0.5 NA Intergenic Intergenic 375351 NM_001244813 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 160.25-80 chr9 93688041 93688623 + 0.5 NA Intergenic L1M4|LINE|L1 93491 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 322.5-13 chr8 122265446 122266457 + 0.5 NA Intergenic MIR|SINE|MIR 302693 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 151.5-33 chr15 97427902 97428400 + 0.5 NA intron (NR_120324, intron 2 of 4) intron (NR_120324, intron 2 of 4) 93660 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 224.75-38 chr7 32354461 32355102 + 0.5 NA intron (NM_001322059, intron 1 of 17) intron (NM_001322059, intron 1 of 17) -55453 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 198.75-23 chr14 86387073 86387479 + 0.5 NA Intergenic L1M5|LINE|L1 452598 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 162-38 chr2 180630622 180631068 + 0.5 NA Intergenic Intergenic -61259 NR_104324 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 146-58 chr3 194580678 194581090 + 0.5 NA Intergenic L1MC4|LINE|L1 -3384 NR_047573 100507297 Hs.586059 NR_047573 TMEM44-AS1 - TMEM44 antisense RNA 1 ncRNA 251.5-24 chr5 100848013 100848934 + 0.5 NA intron (NM_005668, intron 4 of 4) intron (NM_005668, intron 4 of 4) -31908 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 162-41 chr20 45709135 45709658 + 0.5 NA TTS (NM_172005) TTS (NM_172005) -4216 NR_037411 100500897 NR_037411 ENSG00000266071 MIR3617 - microRNA 3617 ncRNA 210.75-5 chr10 15766406 15766885 + 0.5 NA Intergenic Intergenic -46310 NM_001291494 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 148-16 chr10 86127265 86127577 + 0.5 NA intron (NM_017551, intron 4 of 15) intron (NM_017551, intron 4 of 15) 137367 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 163-9 chr10 59154011 59154388 + 0.5 NA Intergenic Intergenic 22265 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 205.25-32 chr5 123744072 123744548 + 0.5 NA Intergenic Intergenic 198893 NM_001270572 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 149.25-6 chr10 7777740 7778239 + 0.5 NA intron (NM_012311, intron 5 of 12) L2a|LINE|L2 10004 NM_012311 22944 Hs.397918 NM_012311 ENSG00000151657 KIN BTCD|KIN17|Rts2 Kin17 DNA and RNA binding protein protein-coding 212.25-49 chr8 127698953 127699760 + 0.5 NA Intergenic Intergenic 34611 NR_117101 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 205.25-2 chr1 42271786 42272534 + 0.5 NA intron (NM_001198850, intron 3 of 12) intron (NM_001198850, intron 3 of 12) 62795 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 161.5-14 chr10 25092681 25093035 + 0.5 NA Intergenic L1MA2|LINE|L1 -20200 NR_120649 101929025 Hs.553324 NR_120649 ENSG00000231422 LINC01516 - long intergenic non-protein coding RNA 1516 ncRNA 187-38 chr4 90610479 90610936 + 0.5 NA intron (NM_207491, intron 5 of 7) intron (NM_207491, intron 5 of 7) 375676 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 206.5-11 chr12 12707424 12708155 + 0.5 NA Intergenic FRAM|SINE|Alu -9481 NM_004064 1027 Hs.238990 NM_004064 ENSG00000111276 CDKN1B CDKN4|KIP1|MEN1B|MEN4|P27KIP1 cyclin dependent kinase inhibitor 1B protein-coding 196.25-18 chr14 79855961 79856706 + 0.5 NA intron (NR_073547, intron 20 of 20) intron (NR_073547, intron 20 of 20) -355086 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 228.75-2 chr10 41862283 41863012 + 0.5 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 505398 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 226.25-37 chr9 113189790 113190580 + 0.5 NA intron (NM_015258, intron 12 of 27) intron (NM_015258, intron 12 of 27) 31092 NM_015258 23307 Hs.522351 NM_015258 ENSG00000119321 FKBP15 FKBP133|KIAA0674|PPP1R76 FKBP prolyl isomerase 15 protein-coding 150.5-5 chr1 74080591 74081159 + 0.5 NA intron (NM_001105659, intron 5 of 7) intron (NM_001105659, intron 5 of 7) 117301 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 204.25-40 chr5 39235192 39235710 + 0.5 NA intron (NM_001243093, intron 1 of 18) intron (NM_001243093, intron 1 of 18) -15888 NM_018594 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 181.75-52 chr4 150293308 150293705 + 0.5 NA intron (NM_001199282, intron 53 of 56) intron (NM_001199282, intron 53 of 56) 215061 NR_036614 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 176.5-42 chr2 140756976 140757543 + 0.5 NA intron (NM_018557, intron 35 of 90) L1MB7|LINE|L1 -170574 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 148.5-46 chr2 126158148 126158635 + 0.5 NA Intergenic Intergenic -40406 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 204.25-8 chr14 21854374 21854981 + 0.5 NA Intergenic LTR41|LTR|ERVL -183660 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 192.5-2 chr1 52510358 52511048 + 0.5 NA intron (NM_001009881, intron 3 of 29) MIRb|SINE|MIR 42387 NM_015269 23318 Hs.655407 NM_015269 ENSG00000134744 TUT4 PAPD3|TENT3A|ZCCHC11 terminal uridylyl transferase 4 protein-coding 185.75-61 chr5 50894885 50895403 + 0.5 NA Intergenic MIR|SINE|MIR 75043 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 187-60 chr8 135039583 135040102 + 0.5 NA Intergenic Intergenic 189907 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 148.5-26 chr14 43915672 43916260 + 0.5 NA Intergenic L1MA3|LINE|L1 591317 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 169.25-56 chr8 118815569 118816062 + 0.5 NA Intergenic Intergenic 136070 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 170-27 chr18 62178383 62178853 + 0.5 NA intron (NM_176787, intron 1 of 30) intron (NM_176787, intron 1 of 30) 8438 NM_012327 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 205-12 chr13 83810538 83811146 + 0.5 NA Intergenic Intergenic 71551 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 183.75-7 chr1 169339545 169339984 + 0.5 NA intron (NR_104229, intron 1 of 12) LTR33|LTR|ERVL 28033 NM_013330 29922 Hs.706952 NM_013330 ENSG00000143156 NME7 CFAP67|MN23H7|NDK 7|NDK7|nm23-H7 NME/NM23 family member 7 protein-coding 175.25-67 chr7 55322651 55323173 + 0.5 NA Intergenic L1MC5|LINE|L1 -42536 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 146.25-86 chr7 42352635 42352996 + 0.5 NA Intergenic MIRc|SINE|MIR -115606 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 178-5 chr10 29906608 29907263 + 0.5 NA Intergenic Intergenic 152651 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 161.25-31 chr18 4424954 4425593 + 0.5 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 29993 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 156.5-98 chr6 96667113 96667605 + 0.5 NA Intergenic LTR50|LTR|ERVL 104234 NM_001322467 9457 Hs.632608 NM_020482 ENSG00000112214 FHL5 1700027G07Rik|ACT|FHL-5|dJ393D12.2 four and a half LIM domains 5 protein-coding 150-52 chr22 27939042 27939487 + 0.5 NA intron (NR_026963, intron 2 of 4) AluSz6|SINE|Alu -18652 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 256.75-21 chr5 38334284 38335211 + 0.5 NA intron (NM_152403, intron 1 of 21) L1ME4c|LINE|L1 -43761 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 184.25-34 chr2 176349200 176349660 + 0.5 NA Intergenic L1MC|LINE|L1 79988 NM_006554 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 164-56 chr4 73920098 73920690 + 0.5 NA Intergenic L2a|LINE|L2 51001 NR_046035 2919 Hs.789 NM_001511 ENSG00000163739 CXCL1 FSP|GRO1|GROa|MGSA|MGSA-a|NAP-3|SCYB1 C-X-C motif chemokine ligand 1 protein-coding 159.25-77 chr8 102039109 102039560 + 0.5 NA intron (NM_001040624, intron 1 of 7) intron (NM_001040624, intron 1 of 7) 54902 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 254.5-21 chr22 24047931 24048701 + 0.5 NA intron (NM_012295, intron 6 of 36) L1M5|LINE|L1 36946 NM_001199281 23523 Hs.517478 NM_012295 ENSG00000099991 CABIN1 CAIN|KB-318B8.7|PPP3IN calcineurin binding protein 1 protein-coding 149.25-63 chr3 80169253 80169662 + 0.5 NA Intergenic Intergenic -401459 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 169-39 chr21 16900651 16901085 + 0.5 NA Intergenic Intergenic 310631 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 171-73 chrX 101878532 101878928 + 0.5 NA Intergenic LTR16|LTR|ERVL -21153 NR_159739 55998 Hs.307077 NM_032946 ENSG00000126952 NXF5 - nuclear RNA export factor 5 protein-coding 183-29 chr2 124932350 124932769 + 0.5 NA Intergenic MIR3|SINE|MIR 907272 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 223-12 chr15 94330662 94331269 + 0.5 NA intron (NM_018349, intron 3 of 21) AluJb|SINE|Alu -24965 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 207.75-37 chr5 33582928 33583639 + 0.5 NA intron (NM_001324512, intron 16 of 21) L1MA1|LINE|L1 142507 NM_001258438 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 161.5 chr1 71336541 71337068 + 0.5 NA Intergenic MER50|LTR|ERV1 255480 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 161.75-36 chr2 199893175 199893643 + 0.5 NA Intergenic L2a|LINE|L2 -17884 NM_153689 205327 Hs.154494 NM_153689 ENSG00000178074 C2orf69 - chromosome 2 open reading frame 69 protein-coding 179-40 chr3 29895197 29895845 + 0.5 NA intron (NM_001003792, intron 8 of 13) L1ME1|LINE|L1 38635 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 180.25-7 chr10 27672334 27672775 + 0.5 NA TTS (NM_173576) TTS (NM_173576) -72061 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 159-53 chr3 55012229 55012820 + 0.5 NA intron (NM_018398, intron 34 of 37) intron (NM_018398, intron 34 of 37) -45422 NM_001304389 57408 Hs.591668 NM_020678 ENSG00000144771 LRTM1 HT017 leucine rich repeats and transmembrane domains 1 protein-coding 192.5-7 chr10 65499563 65499960 + 0.5 NA Intergenic Intergenic -71664 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 201.25-5 chr10 51887636 51888135 + 0.5 NA intron (NM_001098512, intron 4 of 17) L1MA10|LINE|L1 -188290 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 148.5-50 chr2 219732670 219733116 + 0.5 NA Intergenic L1MEh|LINE|L1 105263 NM_005070 6508 Hs.1176 NM_005070 ENSG00000114923 SLC4A3 AE3|CAE3/BAE3|SLC2C solute carrier family 4 member 3 protein-coding 156-96 chr8 115828267 115828676 + 0.5 NA Intergenic AluSz6|SINE|Alu -159496 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 159.25-5 chr10 43388301 43388676 + 0.5 NA intron (NM_001098208, intron 2 of 2) HAL1ME|LINE|L1 8343 NM_001098208 3185 Hs.808 NM_004966 ENSG00000169813 HNRNPF HNRPF|OK/SW-cl.23|mcs94-1 heterogeneous nuclear ribonucleoprotein F protein-coding 156.5-106 chr7 113121895 113122312 + 0.5 NA Intergenic MIR|SINE|MIR -3521 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 167-45 chr2 154762952 154763521 + 0.5 NA intron (NM_002239, intron 2 of 2) intron (NM_002239, intron 2 of 2) 64541 NM_002239 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 192.25-15 chr13 23632144 23632732 + 0.5 NA intron (NM_001354985, intron 5 of 8) intron (NM_001354985, intron 5 of 8) 53078 NM_001204458 55504 Hs.149168 NM_018647 ENSG00000127863 TNFRSF19 TAJ|TAJ-alpha|TRADE|TROY TNF receptor superfamily member 19 protein-coding 256.5-20 chr8 88176393 88177228 + 0.5 NA intron (NM_005941, intron 3 of 9) L1M5|LINE|L1 150673 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 200-11 chr11 40335034 40335520 + 0.5 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -42147 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 218.75-18 chr4 66891850 66892475 + 0.5 NA Intergenic Intergenic 529838 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 203.5-63 chr6 71511229 71511696 + 0.5 NA Intergenic MLT1F|LTR|ERVL-MaLR 90435 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 169.5-37 chr17 65647692 65648331 + 0.5 NA intron (NM_001353129, intron 24 of 26) intron (NM_001353129, intron 24 of 26) -86363 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 245 chr1 68975076 68975678 + 0.5 NA Intergenic Intergenic -80521 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 183.25-35 chr2 109566982 109567525 + 0.5 NA intron (NM_001321513, intron 6 of 9) MIRb|SINE|MIR 46414 NM_001321515 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 179.75-25 chr19 56456745 56457422 + 0.5 NA intron (NM_001321355, intron 4 of 5) intron (NM_001321355, intron 4 of 5) 20262 NM_001321356 63934 Hs.676605 NM_022103 ENSG00000198046 ZNF667 MIPU1 zinc finger protein 667 protein-coding 151.5-3 chr1 74984702 74985192 + 0.5 NA Intergenic L2c|LINE|L2 -143487 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 183.5-65 chr6 69083818 69084322 + 0.5 NA intron (NM_001704, intron 17 of 31) AluSz|SINE|Alu 448788 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 145.75-103 chr6 77444981 77445426 + 0.5 NA Intergenic L1MD1|LINE|L1 18819 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 165-60 chr3 148151322 148151797 + 0.5 NA Intergenic LTR7B|LTR|ERV1 73400 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 173.25-9 chr10 101460743 101461265 + 0.5 NA intron (NM_001256856, intron 2 of 13) AluSx1|SINE|Alu 106839 NM_033637 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 150.25-60 chr22 27005846 27006361 + 0.5 NA Intergenic Intergenic 54415 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 154.5-48 chr2 124845462 124845918 + 0.5 NA intron (NM_130773, intron 19 of 23) L1PBa|LINE|L1 820403 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 279.75-6 chr16 24525959 24526669 + 0.5 NA Intergenic Intergenic -13252 NM_006910 5930 Hs.188553 NM_006910 ENSG00000122257 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA RB binding protein 6, ubiquitin ligase protein-coding 160.75-92 chr5 134827192 134827652 + 0.5 NA intron (NM_001300860, intron 22 of 22) AluSg|SINE|Alu -18258 NM_152409 134553 Hs.708536 NM_152409 ENSG00000181904 C5orf24 - chromosome 5 open reading frame 24 protein-coding 216.75-33 chr8 83164138 83164888 + 0.5 NA Intergenic Intergenic -239245 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 153.5-102 chr7 111961918 111962330 + 0.5 NA intron (NM_001363540, intron 8 of 52) intron (NM_001363540, intron 8 of 52) 153619 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 150-60 chr3 77222640 77223079 + 0.5 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 124847 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 192.5-31 chr22 24129970 24130556 + 0.5 NA intron (NM_012295, intron 28 of 36) intron (NM_012295, intron 28 of 36) -51224 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2|W5C5 sushi domain containing 2 protein-coding 177.5-30 chr2 115781330 115781918 + 0.5 NA intron (NM_001321912, intron 17 of 25) intron (NM_001321912, intron 17 of 25) 437809 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 166.25-59 chr6 161570368 161570807 + 0.5 NA intron (NM_004562, intron 7 of 11) Tigger2a|DNA|TcMar-Tigger 99610 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 165.75-86 chr6 61816849 61817439 + 0.5 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 243014 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 155.5-115 chrX 95049022 95049482 + 0.5 NA Intergenic L1MA7|LINE|L1 13974 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 158.5-55 chr2 239788243 239788797 + 0.5 NA intron (NR_037808, intron 2 of 2) intron (NR_037808, intron 2 of 2) 25660 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 151-53 chr21 22026460 22026852 + 0.5 NA intron (NR_109959, intron 4 of 5) intron (NR_109959, intron 4 of 5) 71803 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 182-19 chr14 64315498 64316211 + 0.5 NA intron (NM_001291712, intron 2 of 13) AluSc|SINE|Alu -21444 NM_001437 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 192.5-60 chr8 40112774 40113210 + 0.5 NA Intergenic LTR9|LTR|ERV1 -40490 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 182-34 chr20 55598300 55598978 + 0.5 NA Intergenic Intergenic -171442 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 158.75-90 chrX 46717297 46717864 + 0.5 NA intron (NM_001257291, intron 1 of 16) AluSz|SINE|Alu 41538 NM_001257291 84679 Hs.91389 NM_032591 ENSG00000065923 SLC9A7 MRX108|NHE-7|NHE7|SLC9A6 solute carrier family 9 member A7 protein-coding 165.25-18 chr17 76730741 76731298 + 0.5 NA intron (NM_001080510, intron 2 of 4) AluY|SINE|Alu 4189 NM_001206983 124512 Hs.74655 NM_001080510 ENSG00000181038 METTL23 C17orf95|MRT44 methyltransferase like 23 protein-coding 177-16 chr12 129938433 129938974 + 0.5 NA Intergenic Intergenic -34678 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 273-15 chrX 80780748 80781481 + 0.5 NA intron (NM_153252, intron 6 of 40) intron (NM_153252, intron 6 of 40) 28763 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 205-31 chr3 120230579 120231393 + 0.5 NA intron (NM_001168271, intron 2 of 8) MER44B|DNA|TcMar-Tigger 13309 NM_153002 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 174.75-29 chr18 63900019 63900586 + 0.5 NA intron (NM_002575, intron 5 of 7) intron (NM_002575, intron 5 of 7) -7656 NM_005024 5273 Hs.158339 NM_005024 ENSG00000242550 SERPINB10 PI-10|PI10 serpin family B member 10 protein-coding 286.75-13 chr6 125891233 125892208 + 0.5 NA intron (NM_001199621, intron 9 of 14) intron (NM_001199621, intron 9 of 14) -27535 NM_001199622 135112 Hs.171426 NM_181782 ENSG00000111912 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 197.75-35 chr2 68702588 68703094 + 0.5 NA Intergenic L1MC|LINE|L1 -31970 NM_001007231 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 186-16 chr18 34041411 34042033 + 0.5 NA intron (NM_001353233, intron 5 of 11) intron (NM_001353233, intron 5 of 11) 6890 NM_001353236 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 181-36 chr5 130252842 130253431 + 0.5 NA Intergenic L1MC3|LINE|L1 348671 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 204.75-45 chr5 113832844 113833331 + 0.5 NA Intergenic Intergenic 319393 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 156-76 chr5 92669720 92670341 + 0.5 NA Intergenic Intergenic 901313 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 156.25-63 chr4 106954190 106954705 + 0.5 NA intron (NM_014421, intron 1 of 3) intron (NM_014421, intron 1 of 3) 81866 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 199.75-49 chr6 132212740 132213262 + 0.5 NA Intergenic L1MEi|LINE|L1 79023 NR_038981 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 190.5-45 chr4 88969082 88969695 + 0.5 NA intron (NM_014883, intron 4 of 23) intron (NM_014883, intron 4 of 23) 87797 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 178.75-38 chr22 25213194 25213730 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -6177 NM_000496 1415 Hs.373074 NM_000496 ENSG00000244752 CRYBB2 CCA2|CRYB2|CRYB2A|CTRCT3|D22S665 crystallin beta B2 protein-coding 211.75-45 chr8 131585812 131586446 + 0.5 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -317964 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 167-51 chr22 21875876 21876492 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -8504 NM_138957 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 201.5-42 chr3 103970866 103971562 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -447098 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 146.25-97 chr8 87118994 87119374 + 0.5 NA intron (NM_173538, intron 4 of 10) L1M2|LINE|L1 252769 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 185-53 chr4 60236461 60237119 + 0.5 NA Intergenic Intergenic -685829 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 147.5-76 chr5 43382452 43382924 + 0.5 NA intron (NM_001301874, intron 2 of 3) (AACTTAA)n|Simple_repeat|Simple_repeat 14449 NM_001301875 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 160.25-81 chr9 96772304 96772906 + 0.5 NA intron (NM_001314060, intron 2 of 4) L1ME3|LINE|L1 5482 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 174.5-56 chr4 34466609 34467054 + 0.5 NA Intergenic Intergenic -197084 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 158.75-65 chr5 129325085 129325638 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR 71786 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 212.75-37 chr9 102516077 102516645 + 0.5 NA Intergenic Intergenic -3276 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 153-6 chr10 4532060 4532392 + 0.5 NA Intergenic Intergenic -123930 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 167.5-34 chr18 60468890 60469478 + 0.5 NA Intergenic L1MEc|LINE|L1 -96409 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 162.25-47 chr21 20473500 20474024 + 0.5 NA Intergenic Intergenic -215077 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 160.25-41 chr21 27766475 27766898 + 0.5 NA Intergenic Intergenic 44307 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 152.75-106 chr9 18703734 18704093 + 0.5 NA intron (NM_001040272, intron 13 of 28) intron (NM_001040272, intron 13 of 28) 130607 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 148.75-83 chr6 1424806 1425227 + 0.5 NA Intergenic Tigger4|DNA|TcMar-Tigger -34605 NR_106778 102466720 NR_106778 ENSG00000275859 MIR6720 hsa-mir-6720|mir-6720 microRNA 6720 ncRNA 161.25-5 chr1 215954760 215955257 + 0.5 NA intron (NM_206933, intron 37 of 71) L2c|LINE|L2 -117457 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 155-104 chr8 103296214 103296684 + 0.5 NA intron (NR_148215, intron 1 of 3) L1MCa|LINE|L1 -2045 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 154-100 chr7 49267718 49268290 + 0.5 NA Intergenic Intergenic 343457 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 184-58 chr9 31702169 31702684 + 0.5 NA Intergenic L1M4|LINE|L1 -320936 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 161.25-70 chr8 101523329 101523812 + 0.5 NA intron (NM_001330593, intron 1 of 15) AluJb|SINE|Alu 31131 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 166.25-2 chr1 75103357 75103769 + 0.5 NA Intergenic L1ME4c|LINE|L1 -24871 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 258.25-13 chr2 192274683 192275472 + 0.5 NA Intergenic Intergenic -80144 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 192.25-13 chr11 75722394 75722882 + 0.5 NA intron (NM_025098, intron 2 of 5) intron (NM_025098, intron 2 of 5) 4800 NM_025098 80168 Hs.288568 NM_025098 ENSG00000166391 MOGAT2 DGAT2L5|DGAT2L5.|MGAT2|hDC5 monoacylglycerol O-acyltransferase 2 protein-coding 171.75-44 chr20 44985808 44986256 + 0.5 NA intron (NM_001352385, intron 4 of 11) intron (NM_001352385, intron 4 of 11) 19520 NR_147975 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 146.5-95 chr6 137209279 137209831 + 0.5 NA intron (NM_000416, intron 1 of 6) THE1A|LTR|ERVL-MaLR 9641 NM_001363526 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 163.75-58 chr5 39518954 39519411 + 0.5 NA Intergenic Intergenic -1249 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 215.75-31 chr6 49298326 49299121 + 0.5 NA Intergenic L2|LINE|L2 164530 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 149.25-56 chr22 25085052 25085544 + 0.5 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) 27394 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 166.25-45 chr3 165524248 165524661 + 0.5 NA Intergenic Intergenic 312969 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 145.75-6 chr1 207341491 207341919 + 0.5 NA TTS (NM_001300902) TTS (NM_001300902) 20027 NM_001300902 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 158-54 chr4 42517480 42518048 + 0.5 NA intron (NM_001105529, intron 21 of 35) intron (NM_001105529, intron 21 of 35) 120276 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 180.75-25 chr17 72523065 72523540 + 0.5 NA intron (NR_036488, intron 1 of 3) AluSq2|SINE|Alu 69502 NR_036488 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 324.5-7 chr3 89340159 89341073 + 0.5 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 232995 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 156.25-19 chr12 86835216 86835709 + 0.5 NA intron (NM_001351286, intron 1 of 7) intron (NM_001351286, intron 1 of 7) 3538 NM_001351286 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 217.25-11 chr10 108175245 108175992 + 0.5 NA Intergenic Intergenic -106325 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 195.75-52 chr4 66625464 66626236 + 0.5 NA Intergenic ERVL-B4-int|LTR|ERVL 349026 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 151-83 chr6 133837802 133838267 + 0.5 NA intron (NR_027030, intron 2 of 2) CpG 16887 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 146.75-45 chr19 47166166 47166614 + 0.5 NA intron (NM_005500, intron 5 of 8) MER115|DNA|hAT-Tip100 35555 NM_001145714 10055 Hs.515500 NM_005500 ENSG00000142230 SAE1 AOS1|HSPC140|SUA1|UBLE1A SUMO1 activating enzyme subunit 1 protein-coding 158.5-59 chr21 34769426 34769914 + 0.5 NA intron (NR_038885, intron 1 of 2) L1MEg|LINE|L1 23845 NR_038885 100506385 Hs.120179 NR_038885 ENSG00000234380 LINC01426 lincRNA-uc002yug.2 long intergenic non-protein coding RNA 1426 ncRNA 147.75-53 chr2 56788816 56789249 + 0.5 NA Intergenic Intergenic -603262 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 190.75-55 chr5 52337971 52338408 + 0.5 NA Intergenic Intergenic 330158 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 180.5-4 chr1 188424530 188425207 + 0.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 981240 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 164-2 chr1 86060215 86060703 + 0.5 NA intron (NM_152890, intron 8 of 59) intron (NM_152890, intron 8 of 59) 96012 NR_146344 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 210.75-23 chr15 91229066 91229616 + 0.5 NA intron (NM_001323033, intron 2 of 10) MIRb|SINE|MIR 127545 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 155.5-24 chr12 86331847 86332255 + 0.5 NA intron (NM_001351286, intron 4 of 7) intron (NM_001351286, intron 4 of 7) -74752 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 189.5-32 chr2 79113226 79113833 + 0.5 NA Intergenic Intergenic -6959 NM_002909 5967 Hs.49407 NM_002909 ENSG00000115386 REG1A ICRF|P19|PSP|PSPS|PSPS1|PTP|REG regenerating family member 1 alpha protein-coding 150.5-18 chr10 36286808 36287222 + 0.5 NA Intergenic AluSx1|SINE|Alu 508713 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 156-63 chr4 36309252 36309603 + 0.5 NA intron (NM_001170700, intron 7 of 9) intron (NM_001170700, intron 7 of 9) 27811 NM_001136536 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 162.75-85 chr8 89505450 89505967 + 0.5 NA Intergenic L1ME3B|LINE|L1 252003 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 172-70 chr5 149970057 149970617 + 0.5 NA intron (NM_000112, intron 1 of 2) AluJo|SINE|Alu 9600 NM_000112 1836 Hs.302738 NM_000112 ENSG00000155850 SLC26A2 D5S1708|DTD|DTDST|EDM4|MST153|MSTP157 solute carrier family 26 member 2 protein-coding 172-60 chr4 64477103 64477606 + 0.5 NA Intergenic Intergenic -67894 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 203.5-33 chr20 52553735 52554357 + 0.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -66792 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 170-19 chr15 49370125 49370649 + 0.5 NA intron (NM_152647, intron 12 of 15) L3|LINE|CR1 -52855 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 160-63 chr4 113609174 113609739 + 0.5 NA intron (NM_001221, intron 3 of 18) MIRc|SINE|MIR 152282 NM_001321591 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 175.75-54 chr4 164343468 164344014 + 0.5 NA intron (NM_001166373, intron 1 of 7) L1PA15|LINE|L1 39514 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 156-35 chr18 70130080 70130504 + 0.5 NA intron (NM_001318520, intron 22 of 47) L1MA4|LINE|L1 75395 NM_001318520 25914 Hs.654809 NM_173630 ENSG00000176225 RTTN MSSP rotatin protein-coding 186-37 chr5 44967959 44968524 + 0.5 NA Intergenic L1MCc|LINE|L1 159294 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 150.5-116 chr8 67797976 67798485 + 0.5 NA Intergenic L1MC|LINE|L1 -51870 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 166.5-41 chr2 155982749 155983304 + 0.5 NA Intergenic L1M5|LINE|L1 271905 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 177-18 chr14 47456897 47457469 + 0.5 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -113937 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 254.5-17 chr2 56524061 56524894 + 0.5 NA Intergenic L2c|LINE|L2 -338707 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 185-18 chr12 40693886 40694529 + 0.5 NA intron (NM_001256063, intron 1 of 15) intron (NM_001256063, intron 1 of 15) 1765 NM_001256063 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 146-85 chr7 32902359 32902773 + 0.5 NA Intergenic Intergenic -10806 NM_015483 25948 Hs.372541 NM_015483 ENSG00000170852 KBTBD2 BKLHD1 kelch repeat and BTB domain containing 2 protein-coding 170.25-73 chr8 76772509 76773106 + 0.5 NA intron (NM_024721, intron 3 of 10) intron (NM_024721, intron 3 of 10) -89532 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 214-3 chr1 78010221 78010909 + 0.5 NA intron (NM_001317103, intron 1 of 1) intron (NM_001317103, intron 1 of 1) 5626 NM_007034 11080 Hs.13852 NM_007034 ENSG00000162616 DNAJB4 DNAJW|DjB4|HLJ1 DnaJ heat shock protein family (Hsp40) member B4 protein-coding 148.75-111 chr9 104259214 104259699 + 0.5 NA Intergenic Intergenic -10773 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 150.5-30 chr12 13618147 13618679 + 0.5 NA intron (NM_000834, intron 4 of 12) L2|LINE|L2 -241668 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 183.75-16 chr11 97520395 97521072 + 0.5 NA Intergenic MER4B-int|LTR|ERV1 1012308 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 194.25-41 chr6 94379006 94379474 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 660937 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 183.25-27 chr15 62729814 62730531 + 0.5 NA intron (NM_015059, intron 25 of 55) AluSc|SINE|Alu 82861 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 174.5-47 chr20 36286959 36287373 + 0.5 NA Intergenic L1ME3|LINE|L1 -19173 NM_014902 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 233-33 chr7 64691177 64691697 + 0.5 NA intron (NM_001282360, intron 2 of 2) intron (NM_001282360, intron 2 of 2) 12373 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 191.5-6 chr1 239365707 239366151 + 0.5 NA Intergenic HAL1|LINE|L1 -20639 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 178.25-60 chr5 129560498 129561046 + 0.5 NA intron (NM_133638, intron 7 of 22) intron (NM_133638, intron 7 of 22) -100083 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 149-18 chr13 28378250 28378750 + 0.5 NA intron (NM_001160030, intron 14 of 14) intron (NM_001160030, intron 14 of 14) 116628 NM_002019 2321 Hs.594454 NM_002019 ENSG00000102755 FLT1 FLT|FLT-1|VEGFR-1|VEGFR1 fms related tyrosine kinase 1 protein-coding 231.75-15 chr2 213460970 213461697 + 0.5 NA intron (NR_047660, intron 8 of 14) intron (NR_047660, intron 8 of 14) 176869 NM_024532 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 220.75-27 chr3 110422393 110422888 + 0.5 NA Intergenic Intergenic 647319 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 154-47 chr2 27460913 27461339 + 0.5 NA intron (NM_015662, intron 22 of 47) intron (NM_015662, intron 22 of 47) 18745 NM_173853 200634 Hs.59509 NM_173853 ENSG00000157992 KRTCAP3 KCP3 keratinocyte associated protein 3 protein-coding 217.75-37 chr7 35394832 35395408 + 0.5 NA Intergenic MIRc|SINE|MIR 81265 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 147-12 chr10 75139426 75139794 + 0.5 NA intron (NM_144660, intron 1 of 4) intron (NM_144660, intron 1 of 4) 27954 NM_144660 142891 Hs.744986 NM_144660 ENSG00000156671 SAMD8 HEL-177|SMSr sterile alpha motif domain containing 8 protein-coding 208-8 chr11 81873279 81873862 + 0.5 NA Intergenic Intergenic 17266 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 157.25-95 chr8 30873378 30873854 + 0.5 NA intron (NR_146525, intron 3 of 6) intron (NR_146525, intron 3 of 6) 15090 NR_146525 56154 Hs.458316 NM_001350162 ENSG00000133863 TEX15 CT42|SPGF25 testis expressed 15, meiosis and synapsis associated protein-coding 177.75-75 chr8 129388371 129388783 + 0.5 NA intron (NR_130918, intron 1 of 2) intron (NR_130918, intron 1 of 2) 95565 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 167.25-28 chr17 54405457 54405945 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -494990 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 169-21 chr15 67302351 67302916 + 0.5 NA intron (NM_001322475, intron 3 of 17) AluSg|SINE|Alu -47435 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 173.75-12 chr10 93973671 93974222 + 0.5 NA Intergenic Intergenic -12031 NR_002319 266971 Hs.149255 NR_002319 ENSG00000180764 PIPSL PIP5K1L1|PIP5K1P3|PSMD4P2|bA429H9.1 PIP5K1A and PSMD4 like (pseudogene) pseudo 146.5-69 chr3 28898937 28899311 + 0.5 NA Intergenic L1MB7|LINE|L1 323846 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 160-3 chr1 98752342 98752814 + 0.5 NA intron (NM_015976, intron 8 of 8) MamRep605|LTR?|LTR? 90857 NM_001364903 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 174.5-3 chr1 62644592 62644980 + 0.5 NA intron (NM_001367561, intron 7 of 49) intron (NM_001367561, intron 7 of 49) 43582 NM_033407 85440 Hs.744927 NM_033407 ENSG00000116641 DOCK7 EIEE23|ZIR2 dedicator of cytokinesis 7 protein-coding 195-20 chr14 68478948 68479531 + 0.5 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 149548 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 153.25-55 chr2 15836159 15836593 + 0.5 NA Intergenic Intergenic -84023 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 261.5-5 chr14 65872429 65873106 + 0.5 NA Intergenic LTR37-int|LTR|ERV1 401665 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 191.5-57 chr8 66281869 66282429 + 0.5 NA Intergenic Intergenic 90035 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 145.75-89 chr4 133904206 133904706 + 0.5 NA Intergenic Intergenic 297333 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 185.25-73 chr7 18242378 18243007 + 0.5 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -47400 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 181.75-66 chr8 131700628 131701122 + 0.5 NA Intergenic Intergenic -203218 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 258.5-24 chr8 64286774 64287421 + 0.5 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 81461 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 207-2 chr10 31787320 31787756 + 0.5 NA Intergenic AluJo|SINE|Alu 121388 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 161.25-3 chr1 150713005 150713441 + 0.5 NA intron (NM_032132, intron 5 of 14) L2a|LINE|L2 7672 NM_001199829 84072 Hs.298312 NM_032132 ENSG00000143452 HORMAD1 CT46|NOHMA HORMA domain containing 1 protein-coding 172.25-13 chr12 6097725 6098374 + 0.5 NA intron (NM_000552, intron 5 of 51) intron (NM_000552, intron 5 of 51) 26626 NM_000552 7450 Hs.440848 NM_000552 ENSG00000110799 VWF F8VWF|VWD von Willebrand factor protein-coding 305.25-2 chr18 68665428 68666412 + 0.5 NA Intergenic Intergenic 49188 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 201.75-43 chr9 28136609 28137129 + 0.5 NA intron (NM_152570, intron 5 of 6) MLT2B1|LTR|ERVL -563003 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 152.5-89 chr5 62213822 62214349 + 0.5 NA Intergenic Intergenic -92077 NM_004520 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 177.5-23 chr16 12749013 12749594 + 0.5 NA intron (NM_018340, intron 2 of 3) Tigger1|DNA|TcMar-Tigger 28982 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 155.25-83 chr7 54394116 54394631 + 0.5 NA Intergenic L1MC5a|LINE|L1 63676 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 149.5-85 chr7 27025170 27025679 + 0.5 NA Intergenic Intergenic 70576 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 198.75-9 chr11 97025025 97025667 + 0.5 NA Intergenic L1MA2|LINE|L1 516921 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 192.75-4 chr10 11515871 11516629 + 0.5 NA intron (NM_014688, intron 5 of 14) intron (NM_014688, intron 5 of 14) 16030 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 167.5-71 chr5 18589468 18590059 + 0.5 NA Intergenic Intergenic 782489 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 166-20 chr14 47684775 47685323 + 0.5 NA Intergenic L1MA4A|LINE|L1 -10095 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 181.75-14 chr11 58195232 58195863 + 0.5 NA Intergenic AluYb9|SINE|Alu 5113 NM_001005283 219957 Hs.553643 NM_001005283 ENSG00000186513 OR9Q2 OR9Q2P olfactory receptor family 9 subfamily Q member 2 protein-coding 216.25-19 chr2 80168090 80168747 + 0.5 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 136334 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 188.75-53 chr5 94914480 94914990 + 0.5 NA intron (NM_001297777, intron 6 of 19) intron (NM_001297777, intron 6 of 19) 167131 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 223.25-4 chr10 49426469 49427110 + 0.5 NA Intergenic L1MC4|LINE|L1 -30700 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 147-25 chr12 68793043 68793499 + 0.5 NA Intergenic Intergenic 12223 NR_073494 100130075 Hs.744781 NR_073494 LOC100130075 - SUZ RNA binding domain containing 1 pseudogene pseudo 148.25-30 chr14 41040154 41040700 + 0.5 NA intron (NR_109758, intron 3 of 3) L1ME3A|LINE|L1 85716 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 171.25-69 chrX 35207306 35207970 + 0.5 NA Intergenic L1ME1|LINE|L1 264842 NM_152631 170062 Hs.197801 NM_152631 ENSG00000189132 FAM47B - family with sequence similarity 47 member B protein-coding 171.75-7 chr1 168868925 168869374 + 0.5 NA Intergenic MIR3|SINE|MIR 82208 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 158.25-35 chr14 49156363 49156844 + 0.5 NA Intergenic Intergenic 429777 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 150.25-96 chr6 168483457 168483931 + 0.5 NA intron (NM_001166412, intron 1 of 12) L1MB3|LINE|L1 42510 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 157-27 chr12 23774700 23775162 + 0.5 NA intron (NM_152989, intron 6 of 17) intron (NM_152989, intron 6 of 17) 174739 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 172.5-52 chr3 165041322 165041824 + 0.5 NA intron (NM_001041, intron 17 of 47) MLT1H2|LTR|ERVL-MaLR 36923 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 152.25-85 chr5 169655147 169655639 + 0.5 NA intron (NR_156756, intron 2 of 52) LTR79|LTR|ERVL 18118 NR_156756 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 182-14 chr12 30228179 30228782 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR -443721 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 241.25-26 chr8 110812725 110813398 + 0.5 NA Intergenic Intergenic 214372 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 162.25-64 chr4 156837088 156837641 + 0.5 NA intron (NM_016205, intron 2 of 5) AluSc5|SINE|Alu 134435 NM_016205 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 212-20 chr2 137812470 137812967 + 0.5 NA Intergenic Intergenic 115214 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 183.75-63 chr3 161545951 161546527 + 0.5 NA Intergenic L1ME3G|LINE|L1 49431 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 215.75-8 chr12 56262644 56263133 + 0.5 NA Intergenic AluSz|SINE|Alu -4054 NM_144576 93058 Hs.4096 NM_144576 ENSG00000135469 COQ10A - coenzyme Q10A protein-coding 149.25-59 chr3 17723796 17724258 + 0.5 NA intron (NM_001349076, intron 1 of 22) L1MEd|LINE|L1 16880 NM_014744 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 197.75-24 chr16 65273778 65274480 + 0.5 NA Intergenic L3b|LINE|CR1 -97556 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 152-32 chr19 28628047 28628549 + 0.5 NA intron (NR_110759, intron 5 of 9) L1MA5A|LINE|L1 21610 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 225.75-3 chr1 187016121 187016959 + 0.5 NA Intergenic Intergenic -76302 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 189.75-52 chr3 122427285 122427956 + 0.5 NA exon (NM_002264, exon 13 of 14) exon (NM_002264, exon 13 of 14) 11414 NR_125405 102723582 Hs.675056 NR_125405 ENSG00000272758 LOC102723582 - uncharacterized LOC102723582 ncRNA 151.75-32 chr15 63185029 63185566 + 0.5 NA Intergenic L2c|LINE|L2 -4309 NM_016530 51762 Hs.389733 NM_016530 ENSG00000166128 RAB8B - RAB8B, member RAS oncogene family protein-coding 149-8 chr10 115959344 115959887 + 0.5 NA Intergenic MLT1L|LTR|ERVL-MaLR 235174 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 268-16 chr7 14347375 14348250 + 0.5 NA intron (NM_001350717, intron 20 of 24) L1MA9|LINE|L1 -356387 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 147.5-55 chr21 31345063 31345438 + 0.5 NA promoter-TSS (NM_001353687) promoter-TSS (NM_001353687) -896 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 157.75-66 chr3 96533251 96533781 + 0.5 NA Intergenic L1MC3|LINE|L1 173552 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 218-16 chr3 73973559 73974055 + 0.5 NA Intergenic Intergenic 164563 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 245.5-7 chr10 26502895 26503741 + 0.5 NA intron (NM_019043, intron 6 of 14) intron (NM_019043, intron 6 of 14) 64977 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 149.25-78 chr4 89814127 89814684 + 0.5 NA intron (NM_001146054, intron 4 of 5) MIRc|SINE|MIR -21996 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 196.75-39 chr4 121469293 121469762 + 0.5 NA Intergenic L1MC4|LINE|L1 -88509 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 146.5-5 chr1 171887045 171887366 + 0.5 NA intron (NM_001278252, intron 1 of 14) MIR3|SINE|MIR 23013 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 160.75-48 chr18 11010977 11011511 + 0.5 NA intron (NM_022068, intron 2 of 51) intron (NM_022068, intron 2 of 51) 137518 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 164-60 chr4 178617860 178618410 + 0.5 NA Intergenic Intergenic -710199 NR_108093 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 172-86 chr8 113093365 113093872 + 0.5 NA intron (NM_001363185, intron 5 of 66) L2|LINE|L2 283534 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 266.5-3 chr1 182975439 182976363 + 0.5 NA Intergenic L1MC5|LINE|L1 -22735 NM_001345928 81626 Hs.497034 NM_030933 ENSG00000157060 SHCBP1L C1orf14|GE36 SHC binding and spindle associated 1 like protein-coding 149.75-26 chr14 62151007 62151373 + 0.5 NA Intergenic Intergenic -11217 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 150.75-50 chr20 54691867 54692286 + 0.5 NA Intergenic Intergenic 216483 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 244-11 chr17 49451979 49452597 + 0.5 NA Intergenic Intergenic 9461 NR_110805 101927207 Hs.638402 NR_110805 ENSG00000249497 LINC02075 - long intergenic non-protein coding RNA 2075 ncRNA 148.75-2 chr1 62603209 62603547 + 0.5 NA intron (NM_014495, intron 5 of 6) intron (NM_014495, intron 5 of 6) 5858 NM_014495 27329 Hs.209153 NM_014495 ENSG00000132855 ANGPTL3 ANG-5|ANGPT5|ANL3|FHBL2 angiopoietin like 3 protein-coding 163 chr1 49277882 49278446 + 0.5 NA intron (NR_136623, intron 2 of 12) MIRb|SINE|MIR 20753 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 185.25-80 chr8 120787337 120787841 + 0.5 NA intron (NM_021021, intron 1 of 6) L1PB3|LINE|L1 24457 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 218.25-7 chr11 10410152 10411001 + 0.5 NA intron (NR_103765, intron 2 of 3) MIR3|SINE|MIR -39745 NM_001172431 272 Hs.501890 NM_000480 ENSG00000133805 AMPD3 - adenosine monophosphate deaminase 3 protein-coding 214.25-15 chr2 59181426 59182135 + 0.5 NA Intergenic Intergenic -35928 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 196-17 chr14 66667810 66668360 + 0.5 NA intron (NM_001024218, intron 1 of 21) L1PA12|LINE|L1 160678 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 203-21 chr2 35668465 35668953 + 0.5 NA Intergenic MIR3|SINE|MIR 197304 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 172.25-41 chr3 47948549 47949115 + 0.5 NA intron (NM_002375, intron 3 of 18) AluSg7|SINE|Alu 99277 NR_031595 100302232 NR_031595 ENSG00000221585 MIR1226 MIRN1226|hsa-mir-1226|mir-1226 microRNA 1226 ncRNA 198.5-14 chr12 26500029 26500547 + 0.5 NA intron (NM_002223, intron 37 of 56) MamGypsy2-I|LTR|Gypsy 304715 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 189-36 chr20 31928548 31929275 + 0.5 NA intron (NR_148013, intron 10 of 16) AluJo|SINE|Alu 23135 NM_030815 81572 Hs.435755 NM_030815 ENSG00000088356 PDRG1 C20orf126|PDRG p53 and DNA damage regulated 1 protein-coding 180.75-46 chr4 14905016 14905521 + 0.5 NA Intergenic L2c|LINE|L2 -17099 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 158.25-24 chr11 95793624 95794051 + 0.5 NA intron (NM_014679, intron 1 of 10) intron (NM_014679, intron 1 of 10) 3339 NM_014679 9702 Hs.101014 NM_014679 ENSG00000166037 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57 protein-coding 231.5-15 chr2 101519740 101520625 + 0.5 NA Intergenic AluJb|SINE|Alu -45070 NM_001367508 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 202.25-10 chr11 41804112 41804849 + 0.5 NA intron (NR_120584, intron 2 of 5) (AAC)n|Simple_repeat|Simple_repeat 89912 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 151-22 chr15 63052912 63053345 + 0.5 NA intron (NM_001018008, intron 1 of 7) intron (NM_001018008, intron 1 of 7) -3741 NR_147233 111064646 Hs.602995 NR_147233 TPM1-AS TPM1-AS1 TPM1 antisense RNA ncRNA 169.75-15 chr10 70627201 70627748 + 0.5 NA Intergenic L1M5|LINE|L1 -24686 NM_005041 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 155.25-95 chr8 136802519 136803001 + 0.5 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 271962 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 227.5-39 chrX 28253457 28254218 + 0.5 NA Intergenic L1ME3B|LINE|L1 241826 NR_106750 102465140 NR_106750 ENSG00000277569 MIR6134 hsa-mir-6134 microRNA 6134 ncRNA 167.75-30 chr14 87942914 87943324 + 0.5 NA intron (NM_000153, intron 14 of 16) intron (NM_000153, intron 14 of 16) 50063 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 189.75-60 chr5 87863794 87864279 + 0.5 NA Intergenic Intergenic 201994 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 180.75-22 chr17 17065353 17065867 + 0.5 NA intron (NM_201274, intron 1 of 23) L1MB8|LINE|L1 22850 NM_015134 23164 Hs.462341 NM_015134 ENSG00000133030 MPRIP M-RIP|MRIP|RHOIP3|RIP3|p116Rip myosin phosphatase Rho interacting protein protein-coding 178.75-6 chr1 158465076 158465582 + 0.5 NA promoter-TSS (NM_001004473) promoter-TSS (NM_001004473) -233 NM_001004473 391109 Hs.690410 NM_001004473 ENSG00000173285 OR10K1 OR1-6 olfactory receptor family 10 subfamily K member 1 protein-coding 161.75-66 chr4 79325941 79326507 + 0.5 NA promoter-TSS (NM_032693) promoter-TSS (NM_032693) -163 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 169.75-60 chr5 68273329 68273693 + 0.5 NA intron (NM_181523, intron 3 of 15) intron (NM_181523, intron 3 of 15) -15008 NM_181524 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 155.75-31 chr14 39064115 39064654 + 0.5 NA intron (NM_006364, intron 11 of 19) intron (NM_006364, intron 11 of 19) -38756 NR_146545 105370458 NR_146545 ENSG00000258651 SEC23A-AS1 - SEC23A antisense RNA 1 ncRNA 256.75-13 chr2 128769470 128770156 + 0.5 NA Intergenic Intergenic -94787 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 179.25-68 chr6 122375470 122375994 + 0.5 NA Intergenic HAL1|LINE|L1 -23819 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 206.25-3 chr1 170703778 170704373 + 0.5 NA intron (NM_022716, intron 1 of 3) intron (NM_022716, intron 1 of 3) 39944 NM_006902 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 152.75-88 chr7 10163816 10164298 + 0.5 NA Intergenic Intergenic 529787 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 220.75-21 chr2 225042980 225043795 + 0.5 NA promoter-TSS (NM_014689) promoter-TSS (NM_014689) -919 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 179.25-31 chr14 44934285 44934856 + 0.5 NA intron (NM_017658, intron 2 of 4) intron (NM_017658, intron 2 of 4) -22653 NR_110050 101927418 Hs.144809 NR_110050 ENSG00000258949 LOC101927418 - uncharacterized LOC101927418 ncRNA 168.5 chr1 38497298 38497675 + 0.5 NA Intergenic (A)n|Simple_repeat|Simple_repeat 22290 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 146.25-32 chr15 98764808 98765246 + 0.5 NA intron (NM_000875, intron 2 of 20) L1MB5|LINE|L1 -19399 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 159.5-27 chr16 25665319 25665793 + 0.5 NA Intergenic Intergenic -26403 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 148.25-5 chr1 185301033 185301415 + 0.5 NA intron (NM_006469, intron 9 of 14) intron (NM_006469, intron 9 of 14) 16019 NM_006469 10625 Hs.497183 NM_006469 ENSG00000116679 IVNS1ABP ARA3|FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP influenza virus NS1A binding protein protein-coding 173.75-64 chr7 86627257 86627702 + 0.5 NA Intergenic MIRc|SINE|MIR -16430 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 198.25-49 chr6 58287604 58288212 + 0.5 NA Intergenic Intergenic -326462 NR_132994 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 167-33 chr18 2219613 2220168 + 0.5 NA Intergenic L2b|LINE|L2 351615 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 158.25-5 chr1 169915567 169915999 + 0.5 NA Intergenic L1MEd|LINE|L1 -21824 NM_181093 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 197-45 chr8 120158333 120158875 + 0.5 NA intron (NM_021110, intron 3 of 47) intron (NM_021110, intron 3 of 47) 33502 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 160.25-48 chr3 182248830 182249254 + 0.5 NA Intergenic Intergenic 237320 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 153-33 chr18 75665358 75665811 + 0.5 NA Intergenic Intergenic 46819 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 167.75-95 chr8 115834456 115834922 + 0.5 NA Intergenic Intergenic -165714 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 151.75-82 chr5 135695884 135696416 + 0.5 NA intron (NM_001349335, intron 3 of 10) intron (NM_001349335, intron 3 of 10) -42215 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 161.75 chr1 104624431 104624764 + 0.5 NA Intergenic Intergenic 551574 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 150.25-6 chr1 103448800 103449212 + 0.5 NA intron (NM_001347930, intron 1 of 4) Tigger1|DNA|TcMar-Tigger 76505 NM_001286997 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 178-67 chr8 17352135 17352576 + 0.5 NA intron (NM_004686, intron 4 of 13) L1M3|LINE|L1 60996 NM_004686 9108 Hs.625674 NM_004686 ENSG00000003987 MTMR7 - myotubularin related protein 7 protein-coding 225-30 chr9 90410806 90411326 + 0.5 NA intron (NR_109795, intron 1 of 2) L1MB4|LINE|L1 22423 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 171.5-17 chr10 108028521 108029012 + 0.5 NA intron (NR_125760, intron 4 of 4) L1M4c|LINE|L1 40527 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 201.25-52 chr9 74298138 74298582 + 0.5 NA Intergenic Intergenic -73171 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 206.75-5 chr1 168190880 168191503 + 0.5 NA intron (NM_152902, intron 3 of 6) intron (NM_152902, intron 3 of 6) 12229 NM_001031800 261726 Hs.209431 NM_152902 ENSG00000143155 TIPRL TIP|TIP41|TIPRL1 TOR signaling pathway regulator protein-coding 168.5-60 chr20 21816715 21817331 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR 111359 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 151.75-97 chr7 16523934 16524469 + 0.5 NA Intergenic Intergenic -2624 NM_001195280 100506049 Hs.278036 NM_001195280 ENSG00000205858 LRRC72 - leucine rich repeat containing 72 protein-coding 153.75-16 chr14 67005111 67005644 + 0.5 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -184063 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 253.5-4 chr11 7570958 7571603 + 0.5 NA intron (NM_003621, intron 3 of 23) intron (NM_003621, intron 3 of 23) -5487 NM_001351857 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 193.75-41 chr3 112461100 112461857 + 0.5 NA Intergenic L1PA17|LINE|L1 37994 NM_001085357 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 206-13 chr18 69385805 69386314 + 0.5 NA Intergenic Intergenic -14829 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 185.75-78 chr7 113506108 113506808 + 0.5 NA Intergenic Intergenic -387876 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 156.5-14 chr1 191953228 191953682 + 0.5 NA Intergenic Intergenic -205007 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 147.5-40 chr2 57010137 57010611 + 0.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -824604 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 150.25-73 chr4 161014431 161014977 + 0.5 NA Intergenic Intergenic -1008029 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 151.5-86 chr6 129254047 129254427 + 0.5 NA intron (NM_000426, intron 14 of 64) intron (NM_000426, intron 14 of 64) 371096 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 152.75-52 chr2 129366808 129367150 + 0.5 NA Intergenic LTR78|LTR|ERV1 -93088 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 167-17 chr13 69201120 69201455 + 0.5 NA Intergenic Intergenic -21059 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 155-71 chr4 59830703 59831052 + 0.5 NA Intergenic Intergenic 817304 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 150.25-13 chr10 27593458 27593770 + 0.5 NA Intergenic L1PA16|LINE|L1 89310 NM_001256411 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 170-32 chr2 73609322 73609892 + 0.5 NA exon (NM_015120, exon 23 of 23) exon (NM_015120, exon 23 of 23) 32815 NM_003960 9027 Hs.14637 NM_003960 ENSG00000144035 NAT8 ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510 N-acetyltransferase 8 (putative) protein-coding 173.75-43 chr3 568202 568642 + 0.5 NA Intergenic MIR|SINE|MIR -23683 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 148.5-64 chr3 128531115 128531569 + 0.5 NA Intergenic L1MB8|LINE|L1 23507 NR_026954 90246 Hs.635164 NR_026954 LOC90246 - uncharacterized LOC90246 ncRNA 179.75-51 chr6 94521005 94521600 + 0.5 NA Intergenic Intergenic 802999 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 209.5-26 chr2 38515837 38516443 + 0.5 NA promoter-TSS (NR_110259) promoter-TSS (NR_110259) -400 NR_110259 101929596 Hs.537341 NR_110259 LINC02613 - long intergenic non-protein coding RNA 2613 ncRNA 215.75-36 chr7 14119666 14120199 + 0.5 NA Intergenic Intergenic -128507 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 166.5-48 chr3 21651926 21652434 + 0.5 NA intron (NM_024697, intron 2 of 7) intron (NM_024697, intron 2 of 7) 99030 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 146-10 chr10 59396711 59397225 + 0.5 NA Intergenic L1PB4|LINE|L1 -33787 NM_001347840 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 163.25-11 chr1 215845395 215845906 + 0.5 NA intron (NM_206933, intron 45 of 71) intron (NM_206933, intron 45 of 71) -226815 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 147-67 chr3 96106458 96106812 + 0.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -253329 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 222-15 chr3 72771498 72772247 + 0.5 NA intron (NM_018130, intron 10 of 10) L3|LINE|CR1 76573 NM_018130 55164 Hs.606584 NM_018130 ENSG00000144736 SHQ1 GRIM-1|Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 185-68 chr8 68236945 68237387 + 0.5 NA TTS (NM_024870) TTS (NM_024870) -93207 NM_001195639 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 159.25-20 chr14 60414936 60415506 + 0.5 NA Intergenic L1MB3|LINE|L1 70842 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 182.75-67 chr7 37138579 37139119 + 0.5 NA intron (NM_001206480, intron 13 of 21) L1PB1|LINE|L1 141053 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 163.75-19 chr12 3084516 3084993 + 0.5 NA intron (NM_006675, intron 2 of 8) MIRb|SINE|MIR 7375 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 152-36 chr2 51702075 51702566 + 0.5 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) -668328 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 154-63 chr21 20173677 20174205 + 0.5 NA Intergenic L2|LINE|L2 84744 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 211-30 chr5 60070603 60071162 + 0.5 NA intron (NM_001349243, intron 2 of 16) L1MB1|LINE|L1 -177156 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 149.75-93 chr7 83942400 83942821 + 0.5 NA Intergenic Intergenic 252179 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 186.25-11 chr12 68979326 68979905 + 0.5 NA Intergenic Arthur1B|DNA|hAT-Tip100 -16375 NM_001874 1368 Hs.654387 NM_001874 ENSG00000135678 CPM - carboxypeptidase M protein-coding 179-35 chr20 54362678 54363296 + 0.5 NA Intergenic L2c|LINE|L2 -112606 NM_018431 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 182.75-45 chr3 179785867 179786569 + 0.5 NA 3' UTR (NM_003940, exon 21 of 21) 3' UTR (NM_003940, exon 21 of 21) -111976 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 150.75-57 chr3 69084163 69084577 + 0.5 NA promoter-TSS (NM_006407) promoter-TSS (NM_006407) -567 NM_006407 10550 Hs.518060 NM_006407 ENSG00000144746 ARL6IP5 DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx ADP ribosylation factor like GTPase 6 interacting protein 5 protein-coding 225.25-2 chr1 72790983 72791780 + 0.5 NA Intergenic Intergenic -508842 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 147-26 chr13 107767075 107767539 + 0.5 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 68151 NR_046848 100874375 Hs.653972 NR_046848 FAM155A-IT1 - FAM155A intronic transcript 1 ncRNA 159-70 chr6 18732904 18733375 + 0.5 NA Intergenic Intergenic 161355 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 157.25-66 chr4 41960772 41961233 + 0.5 NA TTS (NM_018126) TTS (NM_018126) -20754 NM_001029955 285429 Hs.213307 NM_001029955 ENSG00000182308 DCAF4L1 WDR21B DDB1 and CUL4 associated factor 4 like 1 protein-coding 203.75-9 chr18 5031193 5031932 + 0.5 NA Intergenic L1MC4|LINE|L1 -49620 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 178-4 chr10 11568744 11569247 + 0.5 NA intron (NR_125732, intron 2 of 2) intron (NR_125732, intron 2 of 2) -36715 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 162.25-94 chr8 43893444 43894066 + 0.5 NA Intergenic HERVK11-int|LTR|ERVK 601313 NM_001005365 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 161.75-57 chr4 40328242 40328797 + 0.5 NA intron (NR_121641, intron 3 of 3) intron (NR_121641, intron 3 of 3) -6814 NM_017581 55584 Hs.272278 NM_017581 ENSG00000174343 CHRNA9 HSA243342|NACHRA9 cholinergic receptor nicotinic alpha 9 subunit protein-coding 252.25-21 chr9 108548134 108548741 + 0.5 NA Intergenic AluJr|SINE|Alu 307549 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 156-26 chr14 83195398 83195820 + 0.5 NA Intergenic AluSx1|SINE|Alu 552977 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 157.5-42 chr19 46937197 46937794 + 0.5 NA intron (NM_004491, intron 3 of 6) intron (NM_004491, intron 3 of 6) 76498 NM_004491 2909 Hs.509447 NM_004491 ENSG00000160007 ARHGAP35 GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP Rho GTPase activating protein 35 protein-coding 158.25-80 chr5 8646245 8646600 + 0.5 NA Intergenic Intergenic 185497 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 258.75-20 chr6 60232713 60233331 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -1341108 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 176.5-54 chr3 160641438 160641856 + 0.5 NA Intergenic MER58A|DNA|hAT-Charlie -35513 NM_025047 80117 Hs.287702 NM_025047 ENSG00000179674 ARL14 ARF7 ADP ribosylation factor like GTPase 14 protein-coding 188.75-54 chr5 149703478 149704050 + 0.5 NA Intergenic Intergenic -26546 NM_133263 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 250.5-18 chr22 24044301 24045108 + 0.5 NA intron (NM_012295, intron 6 of 36) MLT1A-int|LTR|ERVL-MaLR 33334 NM_001199281 23523 Hs.517478 NM_012295 ENSG00000099991 CABIN1 CAIN|KB-318B8.7|PPP3IN calcineurin binding protein 1 protein-coding 166.25 chr1 44637633 44638258 + 0.5 NA intron (NM_001319957, intron 7 of 13) intron (NM_001319957, intron 7 of 13) 33111 NR_145816 109623472 NR_145816 SNORD145 - small nucleolar RNA, C/D box 145 snoRNA 186-38 chr5 111232635 111233218 + 0.5 NA intron (NM_001744, intron 1 of 10) MER58B|DNA|hAT-Charlie 8542 NM_001323376 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 165.5-6 chr1 109590702 109591226 + 0.5 NA intron (NM_006496, intron 7 of 8) intron (NM_006496, intron 7 of 8) -7929 NR_029583 406974 NR_029583 ENSG00000284443 MIR197 MIRN197|miR-197|miRNA197 microRNA 197 ncRNA 159.75-70 chr4 48023547 48024113 + 0.5 NA intron (NM_207330, intron 1 of 5) intron (NM_207330, intron 1 of 5) 7058 NM_207330 152519 Hs.134190 NM_207330 ENSG00000163293 NIPAL1 NPAL1 NIPA like domain containing 1 protein-coding 150.25-11 chr10 18793259 18793737 + 0.5 NA Intergenic Intergenic 134067 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 190.75-5 chr1 196398119 196398765 + 0.5 NA intron (NM_001287820, intron 13 of 26) intron (NM_001287820, intron 13 of 26) 184039 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 152.75-26 chr12 41044230 41044678 + 0.5 NA intron (NM_001843, intron 23 of 23) intron (NM_001843, intron 23 of 23) 136097 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 162-18 chr12 44215450 44216076 + 0.5 NA intron (NM_001286213, intron 4 of 6) intron (NM_001286213, intron 4 of 6) 379682 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 177-6 chr10 62554551 62554983 + 0.5 NA intron (NM_199452, intron 1 of 6) intron (NM_199452, intron 1 of 6) 34319 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 165.25-24 chr2 78069320 78069760 + 0.5 NA intron (NR_110288, intron 1 of 3) MER58B|DNA|hAT-Charlie -19190 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 160.25-60 chr5 117742589 117743034 + 0.5 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 12450 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 160.25-32 chr2 76272241 76272715 + 0.5 NA Intergenic Intergenic -561563 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 171.5-97 chr8 82155987 82156555 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -313985 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 215.25-37 chr5 164323611 164324150 + 0.5 NA Intergenic MIRc|SINE|MIR 143522 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 148.25-7 chr1 241632565 241633034 + 0.5 NA 3' UTR (NM_001821, exon 1 of 1) 3' UTR (NM_001821, exon 1 of 1) 3131 NM_001821 1122 Hs.654545 NM_001821 ENSG00000203668 CHML REP2 CHM like Rab escort protein protein-coding 245.75-10 chr2 31316721 31317319 + 0.5 NA Intergenic L2b|LINE|L2 82868 NM_014600 30845 Hs.368808 NM_014600 ENSG00000013016 EHD3 PAST3 EH domain containing 3 protein-coding 159.5-105 chr9 102327268 102327749 + 0.5 NA Intergenic L1MC3|LINE|L1 -192129 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 210.25-9 chr12 17892958 17893486 + 0.5 NA Intergenic Intergenic 196971 NM_001286201 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 199.5-26 chr2 186027953 186028435 + 0.5 NA Intergenic L1MC1|LINE|L1 58123 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 162.75-28 chr15 26390564 26391088 + 0.5 NA Intergenic MIR3|SINE|MIR 238264 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 181.75-60 chr7 13244683 13245285 + 0.5 NA Intergenic Intergenic 557351 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 165.25-16 chr16 77299547 77300184 + 0.5 NA intron (NM_199355, intron 17 of 22) intron (NM_199355, intron 17 of 22) 100457 NM_001129979 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 167.75-26 chr13 69167322 69167778 + 0.5 NA Intergenic L1ME2z|LINE|L1 -54796 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 233.5-20 chr4 29277605 29278339 + 0.5 NA Intergenic Intergenic 63680 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 157-66 chr4 12294093 12294527 + 0.5 NA Intergenic Intergenic 70859 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 158-88 chr7 81790507 81790862 + 0.5 NA Intergenic Intergenic -20637 NM_001010932 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 233.75-31 chr7 52760117 52760683 + 0.5 NA Intergenic Intergenic -275233 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 178.25-5 chr1 184598841 184599528 + 0.5 NA intron (NM_030806, intron 5 of 5) intron (NM_030806, intron 5 of 5) 155674 NM_025191 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 172.5-18 chr12 60293594 60294048 + 0.5 NA Intergenic L1MCc|LINE|L1 604451 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 150.25-59 chr22 24835114 24835521 + 0.5 NA intron (NM_001098498, intron 2 of 23) MIRb|SINE|MIR 29096 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 185.5-23 chr13 26653383 26653811 + 0.5 NA intron (NM_006646, intron 3 of 9) L2a|LINE|L2 95894 NM_001291965 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 163.5-87 chr4 175707378 175707781 + 0.5 NA intron (NM_201592, intron 1 of 6) L1MEd|LINE|L1 80097 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 175.5-75 chr5 14787323 14787839 + 0.5 NA intron (NM_054027, intron 1 of 11) intron (NM_054027, intron 1 of 11) 38431 NR_039780 100616271 NR_039780 ENSG00000264792 MIR4637 - microRNA 4637 ncRNA 171.75-3 chr1 69701187 69701633 + 0.5 NA intron (NM_001370785, intron 2 of 26) L2a|LINE|L2 132069 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 190.75-75 chr9 107583504 107584258 + 0.5 NA Intergenic AluSq2|SINE|Alu -94112 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 148.75-85 chr6 38217451 38217890 + 0.5 NA intron (NM_052893, intron 10 of 11) intron (NM_052893, intron 10 of 11) -263926 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 164.75-27 chr16 75830996 75831646 + 0.5 NA Intergenic L1PB1|LINE|L1 -104831 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 168-52 chr4 34891569 34892073 + 0.5 NA Intergenic MIR|SINE|MIR -622074 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 194.25-15 chr18 13787680 13788320 + 0.5 NA Intergenic L1MB7|LINE|L1 -36149 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 158.25-11 chr10 56287141 56287662 + 0.5 NA Intergenic Intergenic 73858 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 158.75-87 chr9 1427484 1427872 + 0.5 NA Intergenic Intergenic 376191 NM_001370532 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 232.75-15 chr2 203151580 203152265 + 0.5 NA intron (NM_001114132, intron 34 of 54) intron (NM_001114132, intron 34 of 54) -86519 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 219.75-7 chr10 52097221 52098045 + 0.5 NA intron (NM_001098512, intron 7 of 17) intron (NM_001098512, intron 7 of 17) 216495 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 146-41 chr2 45420030 45420490 + 0.5 NA intron (NM_018079, intron 16 of 20) MER5A|DNA|hAT-Charlie -165319 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 193.5-6 chr1 216135562 216136005 + 0.5 NA intron (NM_206933, intron 21 of 71) intron (NM_206933, intron 21 of 71) 63318 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 164.25-53 chr20 59849231 59849785 + 0.5 NA Intergenic Intergenic 84129 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 151.5-84 chr5 162091050 162091424 + 0.5 NA intron (NM_198904, intron 1 of 9) intron (NM_198904, intron 1 of 9) 23595 NM_000816 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 205-47 chr8 77972767 77973214 + 0.5 NA Intergenic L1P3|LINE|L1 522293 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 192.75-66 chr8 137269470 137270088 + 0.5 NA Intergenic L1PREC2|LINE|L1 143809 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 158.75-46 chr20 3103086 3103706 + 0.5 NA Intergenic Intergenic -3515 NR_038395 100134015 Hs.129448 NR_038395 ENSG00000235958 UBOX5-AS1 - UBOX5 antisense RNA 1 ncRNA 190.25-58 chr8 96514598 96515272 + 0.5 NA intron (NM_002998, intron 1 of 4) intron (NM_002998, intron 1 of 4) 21122 NM_002998 6383 Hs.1501 NM_002998 ENSG00000169439 SDC2 CD362|HSPG|HSPG1|SYND2 syndecan 2 protein-coding 208.25-26 chr3 26017988 26018558 + 0.5 NA Intergenic Intergenic -144578 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 156.25-78 chr6 5981764 5982154 + 0.5 NA Intergenic Intergenic 22085 NM_001278711 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 176.25-13 chr11 14888156 14888786 + 0.5 NA intron (NM_024514, intron 1 of 4) intron (NM_024514, intron 1 of 4) 3734 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 180.75-6 chr1 88866953 88867458 + 0.5 NA intron (NM_001514, intron 2 of 6) intron (NM_001514, intron 2 of 6) 24362 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 188.75-22 chr17 66629034 66629606 + 0.5 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) -157752 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 150.5-59 chr2 56675179 56675519 + 0.5 NA Intergenic Intergenic -489579 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 224-12 chr17 64221232 64221967 + 0.5 NA intron (NM_018469, intron 1 of 11) L1MB2|LINE|L1 9135 NM_001288733 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 154-77 chr4 157428307 157428803 + 0.5 NA Intergenic L1MC3|LINE|L1 -143935 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 157.5-49 chr2 159663134 159663612 + 0.5 NA Intergenic AluSx|SINE|Alu -46772 NM_001289975 29994 Hs.470369 NM_013450 ENSG00000123636 BAZ2B WALp4 bromodomain adjacent to zinc finger domain 2B protein-coding 147.5-36 chr2 2920090 2920426 + 0.5 NA intron (NR_110228, intron 5 of 6) intron (NR_110228, intron 5 of 6) 205768 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 168.75-87 chr6 67754723 67755076 + 0.5 NA Intergenic Intergenic -300452 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 155.5-36 chr16 46572294 46572648 + 0.5 NA Intergenic Intergenic -3374 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 184.75-43 chr2 67147871 67148608 + 0.5 NA intron (NR_038844, intron 5 of 7) L1MA1|LINE|L1 61793 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 173.75-63 chr7 53309234 53309675 + 0.5 NA Intergenic MIR|SINE|MIR 273821 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 272-11 chr5 73770024 73770952 + 0.5 NA intron (NM_001177693, intron 4 of 35) intron (NM_001177693, intron 4 of 35) -43058 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 160.25-49 chr3 183354960 183355448 + 0.5 NA intron (NM_015078, intron 3 of 29) intron (NM_015078, intron 3 of 29) 73065 NM_015078 23101 Hs.208267 NM_015078 ENSG00000053524 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 160.25-34 chr2 122700857 122701363 + 0.5 NA Intergenic Intergenic 372371 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 159-48 chr22 26872200 26872630 + 0.5 NA intron (NR_146604, intron 3 of 5) L1ME3Cz|LINE|L1 12204 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 175.75-61 chr6 69213761 69214427 + 0.5 NA intron (NM_001704, intron 17 of 31) L2c|LINE|L2 578812 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 179-9 chr12 58885704 58886141 + 0.5 NA intron (NM_153377, intron 9 of 18) intron (NM_153377, intron 9 of 18) 33624 NM_001136051 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 157-83 chr6 141703268 141703863 + 0.5 NA Intergenic AluSq2|SINE|Alu 385234 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 157-10 chr10 32904745 32905332 + 0.5 NA intron (NM_002211, intron 15 of 15) intron (NM_002211, intron 15 of 15) -3566 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 147.25-71 chr5 46067370 46067902 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -371256 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 146-5 chr1 159665972 159666374 + 0.5 NA Intergenic Charlie2a|DNA|hAT-Charlie 48416 NM_001329058 1401 Hs.76452 NM_000567 ENSG00000132693 CRP PTX1 C-reactive protein protein-coding 162-36 chr2 112866687 112867043 + 0.5 NA Intergenic L1M5|LINE|L1 -30086 NM_000576 3553 Hs.126256 NM_000576 ENSG00000125538 IL1B IL-1|IL1-BETA|IL1F2 interleukin 1 beta protein-coding 163-81 chr8 83939244 83939794 + 0.5 NA Intergenic L1MA9|LINE|L1 -243268 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 150.5-34 chr12 64400656 64401082 + 0.5 NA Intergenic AluSx3|SINE|Alu -3523 NM_007235 11260 Hs.85951 NM_007235 ENSG00000184575 XPOT XPO3 exportin for tRNA protein-coding 188.25-37 chr4 59751777 59752360 + 0.5 NA Intergenic Intergenic 738495 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 167.5-37 chr2 29983029 29983459 + 0.5 NA Intergenic Intergenic -61658 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 182.5-33 chr20 43850666 43851382 + 0.5 NA Intergenic Intergenic -43694 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 159.75-21 chr11 84803160 84803551 + 0.5 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -82413 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 175.75-16 chr14 49063654 49064166 + 0.5 NA Intergenic L1PA7|LINE|L1 522470 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 203.75-47 chr8 83156113 83156859 + 0.5 NA Intergenic Intergenic 244382 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 159.75-8 chr1 198280207 198280620 + 0.5 NA intron (NM_133494, intron 7 of 9) (CACATG)n|Simple_repeat|Simple_repeat 123415 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 161.25-21 chr13 59158167 59158788 + 0.5 NA Intergenic L1MC4|LINE|L1 -854241 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 200-28 chr2 81141674 81142403 + 0.5 NA Intergenic L1MA4A|LINE|L1 324908 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 187-26 chr21 26999616 27000061 + 0.5 NA Intergenic THE1D|LTR|ERVL-MaLR -32750 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 211-8 chr10 43618841 43619331 + 0.5 NA Intergenic Intergenic -9731 NR_038867 414201 Hs.666576 NR_038867 ENSG00000223910 ZNF32-AS3 C10orf44|ZNF32-OT1|bA402L1.3 ZNF32 antisense RNA 3 ncRNA 146-45 chr2 119790549 119790929 + 0.5 NA intron (NM_002830, intron 1 of 26) L1MB3|LINE|L1 30817 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 161-70 chr5 76333222 76333653 + 0.5 NA 3' UTR (NM_014979, exon 13 of 13) 3' UTR (NM_014979, exon 13 of 13) -69848 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 165.75-101 chr8 76322785 76323275 + 0.5 NA Intergenic Intergenic -83624 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 262.5-3 chr1 192941253 192942125 + 0.5 NA intron (NR_126003, intron 1 of 2) L2c|LINE|L2 6568 NR_126003 102724954 Hs.243488 NR_126003 LINC01032 - long intergenic non-protein coding RNA 1032 ncRNA 220.25-36 chr5 115904719 115905415 + 0.5 NA intron (NM_001318091, intron 4 of 4) MER85|DNA|PiggyBac -51504 NR_157226 107986443 NR_157226 LINCADL LINC-ADAL lincRNA adipogenesis and lipogenesis associated ncRNA 153.5-15 chr10 108793222 108793767 + 0.5 NA Intergenic Intergenic -724201 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 184-12 chr12 16451102 16451633 + 0.5 NA Intergenic Intergenic 97950 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 161.75-43 chr3 4732448 4733075 + 0.5 NA intron (NM_001168272, intron 41 of 60) intron (NM_001168272, intron 41 of 60) 18829 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 177-62 chr7 4612342 4612943 + 0.5 NA Intergenic MER1A|DNA|hAT-Charlie -69653 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 206.25-28 chr3 98453530 98454013 + 0.5 NA Intergenic L2b|LINE|L2 -15709 NM_001004736 26339 Hs.621533 NM_001004736 ENSG00000232382 OR5K1 HSHTPCRX10|HTPCRX10|OR3-8 olfactory receptor family 5 subfamily K member 1 protein-coding 169-28 chr18 36084465 36084956 + 0.5 NA Intergenic L1PB1|LINE|L1 -17116 NM_001303413 55197 Hs.464912 NM_018170 ENSG00000141425 RPRD1A HsT3101|P15RS regulation of nuclear pre-mRNA domain containing 1A protein-coding 152.5-95 chr6 63686093 63686570 + 0.5 NA TTS (NM_001290260) TTS (NM_001290260) 39805 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 202-4 chr11 108787950 108788397 + 0.5 NA intron (NM_004398, intron 13 of 17) L1PA16|LINE|L1 123104 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 199.25-9 chr12 742751 743434 + 0.5 NA Intergenic Intergenic -9487 NM_014823 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 203-31 chr4 7138436 7139164 + 0.5 NA Intergenic Intergenic -35424 NR_027441 730971 Hs.591718 NR_027441 LINC02447 - long intergenic non-protein coding RNA 2447 ncRNA 173.5-49 chr3 14546181 14546773 + 0.5 NA Intergenic Intergenic -6135 NM_001080423 80852 Hs.517819 NM_001080423 ENSG00000144596 GRIP2 - glutamate receptor interacting protein 2 protein-coding 157.25-23 chr14 76882865 76883406 + 0.5 NA Intergenic Intergenic 56727 NM_194287 145497 Hs.147276 NM_194287 ENSG00000100565 LRRC74A C14orf166B|LRRC74 leucine rich repeat containing 74A protein-coding 176.25-41 chr20 3500572 3501075 + 0.5 NA intron (NM_001323332, intron 1 of 25) L1PA3|LINE|L1 29805 NM_139322 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 157.75-11 chr1 201259521 201259940 + 0.5 NA Intergenic Intergenic -23722 NM_000299 5317 Hs.497350 NM_000299 ENSG00000081277 PKP1 B6P plakophilin 1 protein-coding 163-40 chr18 57781645 57782198 + 0.5 NA intron (NM_005603, intron 1 of 27) AluJr|SINE|Alu 21394 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 180.75-77 chr9 34495817 34496378 + 0.5 NA intron (NM_001281428, intron 9 of 19) MIRb|SINE|MIR 26893 NM_198573 375704 Hs.522085 NM_198573 ENSG00000168913 ENHO C9orf165|UNQ470 energy homeostasis associated protein-coding 208.25-28 chr4 125556635 125557079 + 0.5 NA Intergenic THE1C|LTR|ERVL-MaLR 49598 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 146.75-119 chr8 109341642 109342165 + 0.5 NA intron (NM_001193557, intron 4 of 4) L1ME1|LINE|L1 7556 NM_001193557 56943 Hs.492555 NM_020189 ENSG00000120533 ENY2 DC6|Sus1|e(y)2 ENY2 transcription and export complex 2 subunit protein-coding 174.25-75 chr8 129471615 129472289 + 0.5 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 12190 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 150.75-46 chr2 208838422 208838846 + 0.5 NA Intergenic LTR101_Mam|LTR|ERVL 295992 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 147.75-11 chr1 212073888 212074391 + 0.5 NA intron (NM_001286229, intron 9 of 12) intron (NM_001286229, intron 9 of 12) -3474 NR_036068 100422947 NR_036068 ENSG00000264358 MIR3122 mir-3122 microRNA 3122 ncRNA 214.25-24 chr4 64716890 64717720 + 0.5 NA Intergenic HUERS-P3-int|LTR|ERV1 287195 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 152.5-34 chr15 86402321 86402850 + 0.5 NA intron (NM_152336, intron 18 of 24) intron (NM_152336, intron 18 of 24) -85617 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 173.5-65 chr5 30026296 30026707 + 0.5 NA Intergenic L1PB1|LINE|L1 145941 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 155.75-83 chr4 176024207 176024746 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -21785 NM_201592 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 149-71 chr4 25191489 25191840 + 0.5 NA intron (NR_037934, intron 1 of 1) LTR84b|LTR|ERVL 30992 NR_037934 285540 Hs.732278 NR_037934 SEPSECS-AS1 - SEPSECS antisense RNA 1 (head to head) ncRNA 182.5-50 chr4 119545296 119545775 + 0.5 NA intron (NM_033437, intron 9 of 20) intron (NM_033437, intron 9 of 20) 82202 NM_033430 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 174.75-15 chr11 72786340 72787001 + 0.5 NA intron (NM_006645, intron 1 of 6) intron (NM_006645, intron 1 of 6) 3140 NR_039841 100616410 NR_039841 ENSG00000265064 MIR4692 - microRNA 4692 ncRNA 181.5 chr1 64286706 64287163 + 0.5 NA Intergenic Intergenic 83311 NM_001366232 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 157.25-53 chr2 179622482 179623065 + 0.5 NA intron (NR_148056, intron 3 of 9) intron (NR_148056, intron 3 of 9) -36867 NM_001282725 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 152.75-55 chr2 178534671 178535168 + 0.5 NA exon (NM_133432, exon 187 of 192) exon (NM_133432, exon 187 of 192) 11728 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 191-12 chr11 92248304 92248993 + 0.5 NA intron (NM_001367949, intron 1 of 27) intron (NM_001367949, intron 1 of 27) 23614 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 209.5-15 chr14 58665893 58666454 + 0.5 NA Intergenic CR1-L3A_Croc|LINE|CR1 27336 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 174.25-11 chr10 61457342 61457883 + 0.5 NA intron (NR_120643, intron 1 of 5) HAL1ME|LINE|L1 -4231 NM_178505 219623 Hs.623955 NM_178505 ENSG00000196932 TMEM26 - transmembrane protein 26 protein-coding 165-85 chr8 32329106 32329524 + 0.5 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -111431 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 151.5-53 chr2 144995894 144996330 + 0.5 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 328145 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 160.5-5 chr1 64232259 64232743 + 0.5 NA intron (NR_158769, intron 6 of 8) intron (NR_158769, intron 6 of 8) 28878 NM_001366232 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 165.75-60 chr3 89688222 89688759 + 0.5 NA Intergenic Intergenic 580869 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 146.75-8 chr1 217774076 217774568 + 0.5 NA intron (NM_138796, intron 6 of 10) intron (NM_138796, intron 6 of 10) 10798 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 178.5-37 chr2 19349237 19349884 + 0.5 NA Intergenic Intergenic 1131 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 225.5-24 chr2 158412715 158413496 + 0.5 NA intron (NM_138803, intron 1 of 13) intron (NM_138803, intron 1 of 13) 43648 NM_001301684 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 167.75-3 chr1 70384037 70384415 + 0.5 NA Intergenic Intergenic -26992 NM_001190463 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 176-57 chr5 126558767 126559424 + 0.5 NA intron (NM_001201377, intron 11 of 17) MER117|DNA|hAT-Charlie 36124 NM_001201377 501 Hs.483239 NM_001182 ENSG00000164904 ALDH7A1 ATQ1|EPD|PDE aldehyde dehydrogenase 7 family member A1 protein-coding 177.75-6 chr1 102228955 102229419 + 0.5 NA Intergenic Intergenic -231953 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 183-46 chr7 28251873 28252554 + 0.5 NA Intergenic Zaphod|DNA|hAT-Tip100 -47108 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 221.75-20 chr2 21896590 21897418 + 0.5 NA Intergenic Intergenic -186352 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 152.75-109 chr9 79236191 79236700 + 0.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -90779 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 150.5-113 chr8 28436623 28437115 + 0.5 NA intron (NM_001258211, intron 6 of 7) AluJb|SINE|Alu -50409 NM_018660 55893 Hs.435535 NM_018660 ENSG00000186918 ZNF395 HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14 zinc finger protein 395 protein-coding 150.75-85 chr6 135583319 135583701 + 0.5 NA intron (NR_152845, intron 2 of 4) intron (NR_152845, intron 2 of 4) 85709 NR_026805 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 153.25-119 chrX 155445191 155445707 + 0.5 NA Intergenic L1MA4A|LINE|L1 -12068 NR_036259 100422985 NR_036259 ENSG00000221190 MIR1184-2 - microRNA 1184-2 ncRNA 152.75-107 chr9 20990440 20990793 + 0.5 NA intron (NM_017794, intron 44 of 45) intron (NM_017794, intron 44 of 45) 41024 NM_001321903 401494 Hs.716678 NM_001010915 ENSG00000188921 HACD4 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 protein-coding 153.75-70 chr6 12131743 12132340 + 0.5 NA intron (NM_002114, intron 6 of 8) intron (NM_002114, intron 6 of 8) 119729 NM_002114 3096 Hs.567284 NM_002114 ENSG00000095951 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 156-62 chr4 33093687 33094244 + 0.5 NA Intergenic Intergenic 742927 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 169.75-72 chr8 14556682 14557309 + 0.5 NA intron (NM_139167, intron 1 of 7) L1PB1|LINE|L1 296515 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 158.5-75 chr4 66959526 66959909 + 0.5 NA Intergenic Intergenic 462283 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 187.5-46 chr3 152808672 152809265 + 0.5 NA Intergenic Intergenic -26163 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 195.25-61 chr8 124794882 124795633 + 0.5 NA Intergenic AluSx1|SINE|Alu -26728 NR_039806 100616221 NR_039806 ENSG00000283609 MIR4662A - microRNA 4662a ncRNA 201.5-13 chr14 59532215 59532937 + 0.5 NA intron (NM_001164399, intron 13 of 19) MLT1J|LTR|ERVL-MaLR 44236 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 164.75-70 chr5 131499610 131500238 + 0.5 NA intron (NM_016340, intron 11 of 27) AluSx3|SINE|Alu 135305 NM_001164387 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 146.75-122 chr8 121763648 121764147 + 0.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -122457 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 189.25-51 chr7 78258247 78258907 + 0.5 NA intron (NM_001301128, intron 9 of 20) L1ME3C|LINE|L1 -88665 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 194-58 chr9 19310402 19311018 + 0.5 NA intron (NR_073201, intron 10 of 31) U13|snRNA|snRNA 69526 NM_001010 6194 Hs.408073 NM_001010 ENSG00000137154 RPS6 S6 ribosomal protein S6 protein-coding 147.5-80 chr5 108947059 108947598 + 0.5 NA intron (NR_146155, intron 11 of 19) L1MB5|LINE|L1 22722 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 215-10 chr2 58003233 58003834 + 0.5 NA intron (NM_001288838, intron 1 of 15) MER53|DNA|hAT -43109 NM_001130482 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 202.5-14 chr12 42155909 42156486 + 0.5 NA TTS (NM_001190977) TTS (NM_001190977) -11323 NM_173601 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 161.25-9 chr10 85380519 85381162 + 0.5 NA Intergenic MIR|SINE|MIR 51932 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 172.75-14 chr11 90949278 90949777 + 0.5 NA Intergenic Intergenic -80325 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 169-73 chr8 132790814 132791435 + 0.5 NA intron (NM_198513, intron 2 of 7) MIRb|SINE|MIR 15736 NM_001277196 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 159.5-23 chr14 80338681 80339044 + 0.5 NA intron (NR_038355, intron 2 of 8) MIR|SINE|MIR -107805 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 146-72 chr5 129975889 129976433 + 0.5 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 71696 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 185.25-35 chr18 48769359 48769912 + 0.5 NA intron (NM_014772, intron 9 of 11) intron (NM_014772, intron 9 of 11) 99035 NR_039897 100616366 NR_039897 ENSG00000266276 MIR4743 - microRNA 4743 ncRNA 221.5-44 chr5 94622009 94622713 + 0.5 NA intron (NM_032290, intron 1 of 20) intron (NM_032290, intron 1 of 20) 3692 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 169.5-49 chr2 214236329 214236668 + 0.5 NA intron (NR_047660, intron 14 of 14) AluSx1|SINE|Alu -174556 NR_159945 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 150.75-86 chr6 140522899 140523259 + 0.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -160735 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 171.5-28 chr14 43790837 43791260 + 0.5 NA Intergenic Intergenic 716235 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 151.5-54 chr2 193257528 193258045 + 0.5 NA Intergenic Intergenic 507941 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 162.5-78 chr6 165363224 165363691 + 0.5 NA intron (NM_006661, intron 19 of 22) AluSg7|SINE|Alu -53852 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 162.25-36 chr2 184758262 184758686 + 0.5 NA intron (NM_194250, intron 1 of 3) MIR|SINE|MIR 159945 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 196-22 chr18 44364147 44364730 + 0.5 NA intron (NR_110792, intron 2 of 4) L1PA7|LINE|L1 167259 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 173.25-31 chr18 69649996 69650529 + 0.5 NA intron (NM_152721, intron 3 of 7) intron (NM_152721, intron 3 of 7) 180331 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 154.5-84 chr6 157537446 157538003 + 0.5 NA intron (NM_024630, intron 1 of 8) intron (NM_024630, intron 1 of 8) 8592 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 211-22 chr20 15639124 15639614 + 0.5 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 283945 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 165.75-111 chr8 119454586 119454965 + 0.5 NA Intergenic Intergenic 38329 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 154.75-57 chr20 12765633 12766231 + 0.5 NA Intergenic Intergenic 171031 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 170.25-59 chr5 82988267 82988833 + 0.5 NA Intergenic MamRep38|DNA|hAT 75787 NR_003139 677765 Hs.693283 NR_003139 ENSG00000238835 SCARNA18 SCARNA18A|U109 small Cajal body-specific RNA 18 ncRNA 184.75-29 chr14 66924030 66924495 + 0.5 NA exon (NM_020806, exon 8 of 23) exon (NM_020806, exon 8 of 23) -265178 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 147.25-63 chr4 45378017 45378555 + 0.5 NA Intergenic L1MC4|LINE|L1 -651652 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 146.25-43 chr2 124791049 124791624 + 0.5 NA intron (NM_130773, intron 18 of 23) intron (NM_130773, intron 18 of 23) 766049 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 162-48 chr3 156361398 156361861 + 0.5 NA intron (NM_172159, intron 1 of 13) L2a|LINE|L2 70592 NM_001308222 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 171.25-37 chr22 40586198 40586724 + 0.5 NA intron (NM_020831, intron 2 of 14) intron (NM_020831, intron 2 of 14) 50258 NM_020831 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 222.25-7 chr11 20367822 20368693 + 0.5 NA TTS (NM_001098523) TTS (NM_001098523) 4116 NM_001098523 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 174.5-91 chrX 38835089 38835479 + 0.5 NA Intergenic Intergenic -31401 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 236-26 chr5 24153404 24154205 + 0.5 NA intron (NR_131245, intron 4 of 4) AluSp|SINE|Alu 202456 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 209.75-24 chr3 7527592 7528161 + 0.5 NA intron (NR_046606, intron 1 of 2) L1PA17|LINE|L1 7408 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 164.75-8 chr10 57639801 57640375 + 0.5 NA Intergenic Intergenic -335529 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 146.75-77 chr3 186258117 186258551 + 0.5 NA intron (NM_001080744, intron 15 of 23) intron (NM_001080744, intron 15 of 23) 103900 NM_001346 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 198.25-30 chr20 59994112 59994758 + 0.5 NA non-coding (NR_145482, exon 11 of 18) non-coding (NR_145482, exon 11 of 18) -1939 NM_001348204 60437 Hs.729046 NM_021810 ENSG00000124215 CDH26 VR20 cadherin 26 protein-coding 148-92 chr8 95576865 95577373 + 0.5 NA intron (NR_038207, intron 2 of 2) L1PA3|LINE|L1 -307918 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 147-20 chr11 94277936 94278409 + 0.5 NA Intergenic Intergenic -27465 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 IZUMO1R FOLR4|Folbp3|JUNO IZUMO1 receptor, JUNO protein-coding 152.25-93 chr7 85243565 85244120 + 0.5 NA Intergenic Intergenic -121911 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 153.5-87 chr5 113889709 113890259 + 0.5 NA Intergenic Intergenic 376290 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 208.75-25 chr4 72943101 72943648 + 0.5 NA Intergenic Intergenic 126342 NM_001297732 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 156.75-16 chr10 80269165 80269478 + 0.5 NA Intergenic LTR61|LTR|ERV1 20337 NM_000429 4143 Hs.282670 NM_000429 ENSG00000151224 MAT1A MAT|MATA1|SAMS|SAMS1 methionine adenosyltransferase 1A protein-coding 156.25-31 chr17 39251980 39252528 + 0.5 NA TTS (NM_032875) TTS (NM_032875) -26309 NM_198993 342667 Hs.145068 NM_198993 ENSG00000141750 STAC2 24b2|24b2/STAC2 SH3 and cysteine rich domain 2 protein-coding 159.5-69 chr4 122641529 122642004 + 0.5 NA intron (NR_104126, intron 7 of 10) L2a|LINE|L2 -20700 NM_021803 59067 Hs.567559 NM_021803 ENSG00000138684 IL21 CVID11|IL-21|Za11 interleukin 21 protein-coding 288.25-13 chr8 138454876 138455535 + 0.5 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 42056 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 286.25-5 chr3 32654436 32655112 + 0.5 NA Intergenic AluSx1|SINE|Alu -30414 NR_046352 25904 Hs.444851 NM_015442 ENSG00000182973 CNOT10 - CCR4-NOT transcription complex subunit 10 protein-coding 184-18 chr17 19771418 19772125 + 0.5 NA 3' UTR (NM_014683, exon 27 of 27) 3' UTR (NM_014683, exon 27 of 27) -23473 NM_001330150 218 Hs.531682 NM_000691 ENSG00000108602 ALDH3A1 ALDH3|ALDHIII aldehyde dehydrogenase 3 family member A1 protein-coding 181.75-48 chr4 64660430 64660985 + 0.5 NA Intergenic L1ME3B|LINE|L1 -251247 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 169.75-55 chr4 163681486 163681886 + 0.5 NA intron (NM_001166373, intron 4 of 7) THE1C|LTR|ERVL-MaLR -68152 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 173.25-55 chr4 43693713 43694212 + 0.5 NA Intergenic L1MA3|LINE|L1 -201419 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 160.5-30 chr14 52472583 52473092 + 0.5 NA intron (NM_001160047, intron 14 of 20) LTR9|LTR|ERV1 79668 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 240.5-22 chr5 53104181 53104835 + 0.5 NA intron (NM_004531, intron 3 of 6) intron (NM_004531, intron 3 of 6) 5249 NM_004531 4338 Hs.163645 NM_004531 ENSG00000164172 MOCS2 MCBPE|MOCO1|MOCODB|MPTS molybdenum cofactor synthesis 2 protein-coding 247.25-14 chr3 130695232 130696071 + 0.5 NA intron (NM_014602, intron 13 of 19) MER44B|DNA|TcMar-Tigger 51178 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 175.5-38 chr17 70843766 70844132 + 0.5 NA Intergenic Intergenic 358230 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 151.5-32 chr15 95544606 95545125 + 0.5 NA Intergenic Intergenic 111772 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 167.75-6 chr1 210329876 210330302 + 0.5 NA intron (NM_001170580, intron 1 of 11) intron (NM_001170580, intron 1 of 11) 723 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 153.5-101 chr7 99414073 99414477 + 0.5 NA intron (NM_001370410, intron 3 of 5) AluSg|SINE|Alu 5103 NR_162133 113219453 NR_162133 MIR12119 - microRNA 12119 ncRNA 150.75-54 chr21 30122850 30123233 + 0.5 NA Intergenic Intergenic 43764 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 177.5-8 chr1 235835317 235836009 + 0.5 NA intron (NR_102436, intron 1 of 3) intron (NR_102436, intron 1 of 3) 17397 NR_031718 100302139 NR_031718 ENSG00000222831 MIR1537 MIRN1537|hsa-mir-1537|mir-1537 microRNA 1537 ncRNA 155.5-18 chr11 109872912 109873312 + 0.5 NA Intergenic L1MA6|LINE|L1 -220280 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 173-27 chr13 84028814 84029246 + 0.5 NA Intergenic Intergenic -111572 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 175.25-9 chr10 131569468 131569884 + 0.5 NA Intergenic Intergenic 220523 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 197.5-3 chr1 112205388 112205924 + 0.5 NA Intergenic L1MEd|LINE|L1 -190558 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 152-79 chr6 6965704 6966299 + 0.5 NA Intergenic AluSx|SINE|Alu -141742 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 164.75-79 chr6 162447462 162448114 + 0.5 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -279344 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 157.75-50 chr2 27946169 27946563 + 0.5 NA intron (NM_199193, intron 4 of 13) L1ME1|LINE|L1 -50001 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 146.75-96 chr6 38592384 38592778 + 0.5 NA exon (NM_152733, exon 3 of 10) exon (NM_152733, exon 3 of 10) 3486 NM_152733 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 186-21 chr2 47592978 47593408 + 0.5 NA Intergenic LTR54|LTR|ERV1 -22862 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 150-62 chr3 98106182 98106607 + 0.5 NA Intergenic Intergenic 19221 NM_054106 81050 Hs.554715 NM_054106 ENSG00000196578 OR5AC2 HSA1 olfactory receptor family 5 subfamily AC member 2 protein-coding 183-34 chr4 30804805 30805271 + 0.5 NA intron (NM_032457, intron 1 of 2) L2a|LINE|L2 84669 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 163.5-109 chr7 54259205 54259802 + 0.5 NA Intergenic LTR16A|LTR|ERVL -71194 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 151-92 chr7 104449289 104449722 + 0.5 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 120849 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 151.75-122 chr9 95169798 95170311 + 0.5 NA intron (NM_001243744, intron 6 of 13) intron (NM_001243744, intron 6 of 13) -83960 NR_036109 100422842 NR_036109 ENSG00000207617 MIR3074 mir-3074 microRNA 3074 ncRNA 278.75-5 chr2 154693697 154694706 + 0.5 NA Intergenic MamRTE1|LINE|RTE-BovB -4380 NM_001260508 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 182.5-55 chr5 88329189 88329599 + 0.5 NA intron (NR_105019, intron 6 of 7) FLAM_C|SINE|Alu 60378 NR_105019 100505894 Hs.559426 NR_039993 ENSG00000247828 TMEM161B-AS1 linc-POLR3G-8 TMEM161B antisense RNA 1 ncRNA 168.5-33 chr15 78795795 78796285 + 0.5 NA intron (NM_014272, intron 4 of 23) MIRc|SINE|MIR 15424 NM_014272 11173 Hs.16441 NM_014272 ENSG00000136378 ADAMTS7 ADAM-TS 7|ADAM-TS7|ADAMTS-7 ADAM metallopeptidase with thrombospondin type 1 motif 7 protein-coding 190-62 chr7 18929127 18929704 + 0.5 NA intron (NM_058176, intron 21 of 22) intron (NM_058176, intron 21 of 22) 188221 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 176.5-25 chr15 101452579 101453089 + 0.5 NA intron (NM_138325, intron 1 of 13) intron (NM_138325, intron 1 of 13) 36873 NM_002570 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 184.25-30 chr2 47694527 47695112 + 0.5 NA Intergenic AluSg4|SINE|Alu -88263 NM_001281492 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 152.75-69 chr4 160876270 160876650 + 0.5 NA Intergenic Intergenic -1098676 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 211.25-25 chr2 225191483 225192210 + 0.5 NA Intergenic Intergenic -149378 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 179.75-57 chr6 159633660 159634175 + 0.5 NA Intergenic AluSz|SINE|Alu 59324 NM_001024466 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 266-13 chrX 26385865 26386764 + 0.5 NA Intergenic Intergenic 170145 NM_001271752 347541 Hs.224079 NM_001271752 ENSG00000188408 MAGEB5 CT3.3|MAGE-B5 MAGE family member B5 protein-coding 185.75-95 chrX 96776328 96776899 + 0.5 NA intron (NM_007309, intron 4 of 26) intron (NM_007309, intron 4 of 26) 91771 NM_006729 1730 Hs.226483 NM_006729 ENSG00000147202 DIAPH2 DIA|DIA2|DRF2|POF|POF2|POF2A diaphanous related formin 2 protein-coding 163.5-54 chr2 24154994 24155370 + 0.5 NA intron (NM_001145710, intron 7 of 10) intron (NM_001145710, intron 7 of 10) -19871 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 147.75-66 chr3 699946 700431 + 0.5 NA intron (NR_110118, intron 1 of 3) L1PB1|LINE|L1 108083 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 152.25-57 chr21 28491940 28492520 + 0.5 NA Intergenic Intergenic -47088 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 194.25-20 chr2 107305573 107306242 + 0.5 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 43618 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 170.5-36 chr2 89832248 89832700 + 0.5 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -194567 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 204.25-55 chr8 124506898 124507590 + 0.5 NA intron (NM_001146160, intron 6 of 9) intron (NM_001146160, intron 6 of 9) 1332 NR_106903 102466200 NR_106903 ENSG00000284087 MIR6844 hsa-mir-6844 microRNA 6844 ncRNA 179.75-34 chr3 54354125 54354665 + 0.5 NA intron (NM_018398, intron 3 of 37) intron (NM_018398, intron 3 of 37) 231843 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 160.75-82 chr4 84323404 84323889 + 0.5 NA Intergenic Intergenic -24477 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 148.5-65 chr3 151962360 151962806 + 0.5 NA Intergenic Intergenic -34408 NR_110203 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 162.25-5 chr1 241180714 241181159 + 0.5 NA intron (NM_001282778, intron 2 of 16) L1MC1|LINE|L1 48664 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 222-22 chr6 48081458 48082084 + 0.5 NA Intergenic Intergenic -13082 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 146-97 chr8 114327137 114327618 + 0.5 NA Intergenic Tigger2|DNA|TcMar-Tigger -890438 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 161.25-45 chr3 98277871 98278391 + 0.5 NA Intergenic Intergenic -4757 NM_001005482 79310 Hs.554711 NM_001005482 ENSG00000197938 OR5H2 OR3-10 olfactory receptor family 5 subfamily H member 2 protein-coding 165-22 chr12 126059260 126059873 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 -36426 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 146.5-26 chr14 44822463 44822913 + 0.5 NA Intergenic L1PA10|LINE|L1 -23562 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 249.5-14 chr2 209142281 209142985 + 0.5 NA Intergenic L1MA10|LINE|L1 -281414 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 151.5-22 chr12 93689039 93689568 + 0.5 NA intron (NM_001320100, intron 2 of 2) intron (NM_001320100, intron 2 of 2) 10534 NM_001330126 8738 Hs.38533 NM_003805 ENSG00000169372 CRADD MRT34|RAIDD CASP2 and RIPK1 domain containing adaptor with death domain protein-coding 172.5-20 chr13 72650156 72650691 + 0.5 NA Intergenic Intergenic 77206 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 150.5-37 chr13 103723688 103724241 + 0.5 NA Intergenic MLT2B4|LTR|ERVL 298764 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 228.5-37 chr4 12517170 12517827 + 0.5 NA Intergenic Intergenic 294047 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 169.75-36 chr15 84996939 84997477 + 0.5 NA intron (NM_173454, intron 1 of 20) AluJo|SINE|Alu 15234 NM_173454 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 184.75-34 chr16 73235254 73235944 + 0.5 NA Intergenic Charlie8|DNA|hAT-Charlie -91152 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 148-39 chr17 75079718 75080193 + 0.5 NA Intergenic Intergenic -7810 NM_001271765 9121 Hs.592095 NM_004695 ENSG00000170190 SLC16A5 MCT5|MCT6 solute carrier family 16 member 5 protein-coding 159-86 chr9 5943153 5943670 + 0.5 NA intron (NM_001017969, intron 5 of 7) intron (NM_001017969, intron 5 of 7) 52522 NM_005511 2315 Hs.154069 NM_005511 ENSG00000120215 MLANA MART-1|MART1 melan-A protein-coding 189.5-34 chr2 126638806 126639261 + 0.5 NA Intergenic L3|LINE|CR1 -16902 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 152.25-54 chr2 238021671 238022111 + 0.5 NA intron (NM_080678, intron 5 of 9) L1M5|LINE|L1 -39110 NM_016510 51540 Hs.731909 NM_016510 ENSG00000132330 SCLY SCL|hSCL selenocysteine lyase protein-coding 174.75-70 chr8 133836673 133837205 + 0.5 NA Intergenic L2b|LINE|L2 -49557 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 197.5-28 chr2 17260268 17260713 + 0.5 NA Intergenic Intergenic 257950 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 155.75-82 chr4 164411827 164412384 + 0.5 NA Intergenic Intergenic -28850 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 269.75-12 chr5 13948192 13949054 + 0.5 NA Intergenic Intergenic -4143 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 153.25-59 chr2 53613171 53613679 + 0.5 NA Intergenic L1MA4A|LINE|L1 -154358 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 189-45 chr4 54941541 54942142 + 0.5 NA Intergenic Intergenic 183754 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 165.5-91 chr7 97358811 97359220 + 0.5 NA Intergenic LTR101_Mam|LTR|ERVL 242422 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 201.5-48 chr4 92509005 92509754 + 0.5 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 204980 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 164.5-25 chr16 65399570 65400074 + 0.5 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 176478 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 190.75-62 chr7 9582511 9583062 + 0.5 NA Intergenic Intergenic -51484 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 149.5-51 chr2 212360811 212361200 + 0.5 NA intron (NM_001042599, intron 1 of 26) L5|LINE|RTE-X 65355 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 206.75-51 chr8 66584695 66585353 + 0.5 NA intron (NM_001144755, intron 8 of 14) L1MA5|LINE|L1 28194 NM_001294282 4603 Hs.445898 NM_001080416 ENSG00000185697 MYBL1 A-MYB|AMYB MYB proto-oncogene like 1 protein-coding 158.25-4 chr1 157567981 157568522 + 0.5 NA Intergenic MIRb|SINE|MIR -15736 NM_031281 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 247.25-21 chr7 92236159 92236820 + 0.5 NA exon (NM_001350697, exon 8 of 20) exon (NM_001350697, exon 8 of 20) -9485 NM_019004 54467 Hs.83293 NM_019004 ENSG00000001629 ANKIB1 - ankyrin repeat and IBR domain containing 1 protein-coding 154.25-14 chr10 78403798 78404248 + 0.5 NA Intergenic Intergenic 136681 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 164-26 chr18 69098864 69099274 + 0.5 NA Intergenic MSTC|LTR|ERVL-MaLR 300989 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 204.5-16 chr19 2499930 2500674 + 0.5 NA Intergenic Intergenic 24175 NM_015675 4616 Hs.110571 NM_015675 ENSG00000099860 GADD45B GADD45BETA|MYD118 growth arrest and DNA damage inducible beta protein-coding 211 chr1 16227582 16228143 + 0.5 NA Intergenic Intergenic 9321 NM_030907 79363 Hs.546430 NM_030907 ENSG00000132881 CPLANE2 C1orf89|RSG1 ciliogenesis and planar polarity effector 2 protein-coding 226.5-29 chr8 133370298 133370807 + 0.5 NA Intergenic MIRb|SINE|MIR -73248 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 165-10 chr10 60537565 60538113 + 0.5 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 35117 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 183.5-66 chr6 165550481 165551209 + 0.5 NA intron (NM_001130690, intron 1 of 21) intron (NM_001130690, intron 1 of 21) 111255 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 150.5-88 chr4 115470947 115471405 + 0.5 NA Intergenic Intergenic -357556 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 190-32 chr2 205946663 205947208 + 0.5 NA Intergenic Intergenic 139239 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 157.25-112 chr9 105213424 105213952 + 0.5 NA Intergenic AluY|SINE|Alu -30917 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 190.75-41 chr3 8404649 8405250 + 0.5 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 96709 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 155-33 chr16 23581634 23582243 + 0.5 NA intron (NM_005003, intron 4 of 4) intron (NM_005003, intron 4 of 4) 14378 NM_005003 4706 Hs.189716 NM_005003 ENSG00000004779 NDUFAB1 ACP|ACP1|FASN2A|SDAP NADH:ubiquinone oxidoreductase subunit AB1 protein-coding 154.5-17 chr11 78258783 78259143 + 0.5 NA intron (NM_012296, intron 2 of 9) L1PREC2|LINE|L1 70044 NM_020798 57558 Hs.531249 NM_020798 ENSG00000118369 USP35 - ubiquitin specific peptidase 35 protein-coding 209.25-18 chr19 33996647 33997222 + 0.5 NA Intergenic L1MEf|LINE|L1 -175570 NM_001114093 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 212.25-53 chr9 2482634 2483453 + 0.5 NA Intergenic Intergenic -138744 NM_001018056 7436 Hs.370422 NM_003383 ENSG00000147852 VLDLR CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH very low density lipoprotein receptor protein-coding 159.5-71 chr5 2260828 2261383 + 0.5 NA Intergenic Intergenic 51096 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 176.75-12 chr11 21470392 21470826 + 0.5 NA intron (NM_201551, intron 15 of 18) L2c|LINE|L2 -722476 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 179.75-16 chr14 88851848 88852520 + 0.5 NA intron (NR_159362, intron 7 of 14) intron (NR_159362, intron 7 of 14) 27533 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 192.25-58 chr8 31020136 31020616 + 0.5 NA intron (NM_001323312, intron 2 of 2) intron (NM_001323312, intron 2 of 2) 12425 NM_013357 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 179-5 chr11 44952360 44952901 + 0.5 NA Intergenic Intergenic -1324 NM_001258324 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding 203.5-9 chr11 75057765 75058235 + 0.5 NA Intergenic MSTA|LTR|ERVL-MaLR 38890 NM_001005285 341152 Hs.554515 NM_001005285 ENSG00000171561 OR2AT4 OR11-265 olfactory receptor family 2 subfamily AT member 4 protein-coding 160.5-106 chr7 50226054 50226631 + 0.5 NA Intergenic MIR|SINE|MIR -77722 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 151.75-4 chr1 150414196 150414619 + 0.5 NA intron (NM_015203, intron 1 of 10) MIRb|SINE|MIR 50296 NM_001297674 23248 Hs.213666 NM_015203 ENSG00000163125 RPRD2 HSPC099|KIAA0460 regulation of nuclear pre-mRNA domain containing 2 protein-coding 236.5-25 chr4 180102458 180103149 + 0.5 NA Intergenic Intergenic 1056346 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 150.75 chr1 15342729 15343142 + 0.5 NA intron (NM_052929, intron 15 of 30) AluJr|SINE|Alu 948 NR_148918 101927417 Hs.715313 NR_148918 ENSG00000233485 LOC101927417 - uncharacterized LOC101927417 ncRNA 161.5-54 chr20 56147419 56148022 + 0.5 NA Intergenic Intergenic -101012 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 186.75-75 chr6 16020894 16021397 + 0.5 NA Intergenic AluSx|SINE|Alu -107941 NM_013262 29116 Hs.484738 NM_013262 ENSG00000007944 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 167-89 chr8 121425986 121426464 + 0.5 NA Intergenic Intergenic -213121 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 170.25-9 chr11 90732106 90732659 + 0.5 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) 136820 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 183.5-26 chr17 74808110 74808558 + 0.5 NA intron (NM_017728, intron 8 of 9) MIRc|SINE|MIR 31835 NM_001321264 54868 Hs.370262 NM_017728 ENSG00000109066 TMEM104 - transmembrane protein 104 protein-coding 165.25-31 chr20 31611834 31612354 + 0.5 NA Intergenic Intergenic 4908 NR_036161 100422904 NR_036161 ENSG00000264395 MIR3193 - microRNA 3193 ncRNA 206.75-48 chr6 144990217 144990729 + 0.5 NA Intergenic L2b|LINE|L2 584818 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 183.75-24 chr12 76182251 76182670 + 0.5 NA Intergenic AluSz|SINE|Alu -77423 NR_146531 105369848 NR_146531 LNCOG LINC02407|lncRNA-OG lncRNA osteogenesis associated ncRNA 217.75-40 chrX 106248134 106248814 + 0.5 NA Intergenic MER4D1|LTR|ERV1 80169 NM_001171020 139221 Hs.592221 NM_152423 ENSG00000157502 PWWP3B MUM1L1 PWWP domain containing 3B protein-coding 166.75-69 chr5 22758312 22758797 + 0.5 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 94790 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 152.5-27 chr14 71524922 71525485 + 0.5 NA intron (NM_001354286, intron 4 of 24) AluY|SINE|Alu 37342 NR_027046 145474 Hs.658241 NR_027046 LOC145474 - uncharacterized LOC145474 ncRNA 258.75-9 chr14 72575423 72576048 + 0.5 NA Intergenic L1MA6|LINE|L1 58915 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 148.75-110 chr9 32612827 32613314 + 0.5 NA Intergenic MLT1J|LTR|ERVL-MaLR 22599 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 165.75-55 chr21 21616848 21617367 + 0.5 NA Intergenic Intergenic 120212 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 197.75-64 chr6 142105675 142106173 + 0.5 NA intron (NM_001324308, intron 1 of 2) MER57A-int|LTR|ERV1 -17125 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 151.75-84 chr5 148645559 148645955 + 0.5 NA intron (NR_104445, intron 1 of 7) intron (NR_104445, intron 1 of 7) -8696 NM_199453 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 185-21 chr14 48897806 48898263 + 0.5 NA Intergenic Intergenic 688346 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 179.75-69 chr9 87181077 87181698 + 0.5 NA Intergenic L1MB3|LINE|L1 32743 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 152-12 chr11 6657916 6658388 + 0.5 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 -2343 NM_003737 8642 Hs.199850 NM_003737 ENSG00000166341 DCHS1 CDH19|CDH25|CDHR6|FIB1|MVP2|PCDH16|VMLDS1 dachsous cadherin-related 1 protein-coding 336-2 chr13 91072287 91073165 + 0.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR 16891 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 167-21 chr14 45439363 45439896 + 0.5 NA Intergenic Intergenic -186427 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 148.5-15 chr11 2536625 2537198 + 0.5 NA intron (NM_181798, intron 2 of 15) MLT1C|LTR|ERVL-MaLR 75457 NM_181798 3784 Hs.95162 NM_000218 ENSG00000053918 KCNQ1 ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS potassium voltage-gated channel subfamily Q member 1 protein-coding 173.75-41 chr20 49765568 49766228 + 0.5 NA Intergenic MER41A|LTR|ERV1 -46815 NM_001260491 23315 Hs.444202 NM_015266 ENSG00000197818 SLC9A8 NHE-8|NHE8 solute carrier family 9 member A8 protein-coding 197.25-33 chr21 29865102 29865675 + 0.5 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 74608 NM_001330994 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 165.5-89 chr7 42968779 42969251 + 0.5 NA Intergenic L1MC3|LINE|L1 36639 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 154.5-61 chr3 106730206 106730715 + 0.5 NA Intergenic Intergenic 510178 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 182.5-69 chr6 104174205 104174789 + 0.5 NA Intergenic Intergenic 685049 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 239-3 chr10 59339830 59340496 + 0.5 NA intron (NM_001347848, intron 4 of 15) intron (NM_001347848, intron 4 of 15) 22386 NM_198215 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 155-40 chr2 8994452 8994866 + 0.5 NA intron (NR_135603, intron 1 of 13) intron (NR_135603, intron 1 of 13) 9025 NR_135603 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 178.25-58 chr5 110430290 110430927 + 0.5 NA intron (NM_001039763, intron 12 of 13) intron (NM_001039763, intron 12 of 13) 83307 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 178-43 chr3 133907160 133907719 + 0.5 NA Intergenic Charlie5|DNA|hAT-Charlie -11557 NM_016577 51560 Hs.715344 NM_016577 ENSG00000154917 RAB6B - RAB6B, member RAS oncogene family protein-coding 209.5-37 chr4 44319475 44319990 + 0.5 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 129077 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 165.75-107 chr8 102681015 102681432 + 0.5 NA intron (NR_160672, intron 3 of 4) intron (NR_160672, intron 3 of 4) 24975 NR_160672 101927245 NR_160672 LOC101927245 - uncharacterized LOC101927245 ncRNA 248.25-13 chr4 30483064 30483825 + 0.5 NA Intergenic Intergenic -236925 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 180.25-22 chr16 7300596 7301044 + 0.5 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -32025 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 174.75-25 chr16 30442880 30443401 + 0.5 NA TTS (NM_012248) TTS (NM_012248) 2734 NM_012248 22928 Hs.118725 NM_012248 ENSG00000179918 SEPHS2 SPS2 selenophosphate synthetase 2 protein-coding 162.75-27 chr14 66258357 66259006 + 0.5 NA Intergenic Intergenic -227690 NR_110307 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 150.25-101 chr8 35015983 35016389 + 0.5 NA Intergenic AluSg4|SINE|Alu -219289 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 193.5-12 chr11 41597393 41598118 + 0.5 NA Intergenic Intergenic -116813 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 261-18 chr8 76093483 76094172 + 0.5 NA Intergenic L1M4c|LINE|L1 -312827 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 202.5-55 chr6 127018540 127019152 + 0.5 NA Intergenic Intergenic -99825 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 186-28 chr20 10838388 10838881 + 0.5 NA Intergenic L1ME1|LINE|L1 70638 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 148-88 chr7 82131220 82131652 + 0.5 NA intron (NM_000722, intron 5 of 38) MER57C2|LTR|ERV1 122259 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 193.25-17 chr12 125402565 125403139 + 0.5 NA intron (NM_052907, intron 2 of 8) intron (NM_052907, intron 2 of 8) 76236 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 146-29 chr16 63536138 63536497 + 0.5 NA Intergenic Intergenic -1499879 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 184.75-73 chr7 28788793 28789218 + 0.5 NA intron (NM_001011666, intron 3 of 6) intron (NM_001011666, intron 3 of 6) 102872 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 157.25-83 chr6 102190682 102191014 + 0.5 NA Intergenic L1M4c|LINE|L1 791863 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 150.25-75 chr5 6538309 6538778 + 0.5 NA Intergenic Tigger2a|DNA|TcMar-Tigger -43593 NR_024423 255167 Hs.435515 NR_024423 ENSG00000250056 LINC01018 SRHC long intergenic non-protein coding RNA 1018 ncRNA 156.5-117 chrX 78753101 78753517 + 0.5 NA intron (NM_001278000, intron 4 of 4) intron (NM_001278000, intron 4 of 4) 5589 NM_005296 2846 Hs.522701 NM_005296 ENSG00000147145 LPAR4 GPR23|LPA4|P2RY9|P2Y5-LIKE|P2Y9 lysophosphatidic acid receptor 4 protein-coding 193.25-66 chr9 31942926 31943503 + 0.5 NA Intergenic AluSp|SINE|Alu -441389 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 197.75-67 chr7 30168720 30169252 + 0.5 NA Intergenic Intergenic 34000 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 146.5-39 chr17 63051114 63051623 + 0.5 NA intron (NM_025185, intron 2 of 25) LTR89|LTR|ERVL? 85133 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 178-48 chr4 65343515 65344161 + 0.5 NA intron (NM_001281767, intron 15 of 16) intron (NM_001281767, intron 15 of 16) 325650 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 154.25-66 chr5 171164788 171165274 + 0.5 NA intron (NM_022897, intron 14 of 27) intron (NM_022897, intron 14 of 27) -144217 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 173-84 chr8 52232581 52233026 + 0.5 NA intron (NM_001352881, intron 2 of 2) intron (NM_001352881, intron 2 of 2) 15841 NM_001352856 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 150.75-67 chr4 94722796 94723313 + 0.5 NA Intergenic Intergenic 34479 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 166.25-5 chr1 213979768 213980422 + 0.5 NA intron (NR_037850, intron 1 of 5) CpG 6058 NR_037850 100505832 Hs.664625 NR_037850 PROX1-AS1 - PROX1 antisense RNA 1 ncRNA 187.75-7 chr10 46517475 46518098 + 0.5 NA Intergenic Intergenic 38285 NM_014696 9721 Hs.523375 NM_014696 ENSG00000204175 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 152-11 chr10 106625992 106626331 + 0.5 NA intron (NM_001206569, intron 19 of 25) intron (NM_001206569, intron 19 of 25) 485996 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 192.75-11 chr11 5901847 5902540 + 0.5 NA TTS (NM_001005166) TTS (NM_001005166) 1428 NM_001005166 390082 NM_001005166 ENSG00000277932 OR52E5 OR11-56 olfactory receptor family 52 subfamily E member 5 protein-coding 185.25-38 chr2 28148483 28149146 + 0.5 NA non-coding (NR_120504, exon 3 of 3) non-coding (NR_120504, exon 3 of 3) 58147 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 220.75-43 chr9 7905511 7906134 + 0.5 NA Intergenic L1MA7|LINE|L1 -106044 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 226.75-14 chr2 65631868 65632715 + 0.5 NA Intergenic Intergenic -199692 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 156.75-81 chr6 15641635 15642134 + 0.5 NA intron (NM_001271669, intron 1 of 7) L1PA17|LINE|L1 21144 NR_036448 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 189.25 chr1 89309940 89310362 + 0.5 NA Intergenic Intergenic -19789 NR_077244 729930 Hs.745054 NR_077244 LOC729930 - chromosome 11 open reading frame 74 pseudogene pseudo 145.75-112 chr7 30722535 30722986 + 0.5 NA Intergenic Intergenic -22657 NM_001202481 1395 Hs.546246 NM_001883 ENSG00000106113 CRHR2 CRF-RB|CRF2|CRFR2|HM-CRF corticotropin releasing hormone receptor 2 protein-coding 191.5-51 chr6 5392409 5392919 + 0.5 NA intron (NM_006567, intron 2 of 6) intron (NM_006567, intron 2 of 6) 65411 NR_125846 101927972 Hs.668417 NR_125846 ENSG00000269985 LOC101927972 - uncharacterized LOC101927972 ncRNA 167.25-29 chr17 61943830 61944328 + 0.5 NA 3' UTR (NM_005121, exon 30 of 30) 3' UTR (NM_005121, exon 30 of 30) -16097 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 215.5-38 chr4 72179175 72179832 + 0.5 NA Intergenic MIRb|SINE|MIR 140371 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 152 chr1 5696073 5696616 + 0.5 NA Intergenic L1MC3|LINE|L1 166397 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 166.25-61 chr7 9162810 9163364 + 0.5 NA Intergenic L1MA1|LINE|L1 -471183 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 171-21 chr14 58545850 58546257 + 0.5 NA intron (NM_001329944, intron 31 of 31) intron (NM_001329944, intron 31 of 31) -88015 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 162-57 chr4 82005246 82005814 + 0.5 NA Intergenic Intergenic 368461 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 147.25-43 chr2 5947162 5947582 + 0.5 NA intron (NR_026832, intron 1 of 1) intron (NR_026832, intron 1 of 1) 14685 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 172.75-47 chr4 89512698 89513109 + 0.5 NA Intergenic Intergenic -205103 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 155.75-2 chr1 61103542 61104147 + 0.5 NA intron (NM_001134673, intron 2 of 10) intron (NM_001134673, intron 2 of 10) 21283 NM_005595 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA BRMUTD|CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 169.5-6 chr1 178690782 178691177 + 0.5 NA Intergenic Intergenic 13230 NR_039622 100616328 NR_039622 ENSG00000266417 MIR4424 - microRNA 4424 ncRNA 173.25-66 chr6 43970542 43971115 + 0.5 NA Intergenic Intergenic -29757 NR_160956 221416 Hs.531926 NM_153246 ENSG00000181577 C6orf223 - chromosome 6 open reading frame 223 ncRNA 188-16 chr11 93392468 93392919 + 0.5 NA intron (NM_181645, intron 9 of 13) L1MC5|LINE|L1 61976 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 194.75-51 chr8 89042338 89042793 + 0.5 NA Intergenic MER107|DNA|hAT-Charlie -715082 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 148-24 chr12 49980303 49980762 + 0.5 NA Intergenic Intergenic 7585 NM_001652 363 Hs.54505 NM_001652 ENSG00000086159 AQP6 AQP2L|KID aquaporin 6 protein-coding 160.75-37 chr15 53613737 53614174 + 0.5 NA intron (NM_182758, intron 15 of 19) intron (NM_182758, intron 15 of 19) -72852 NM_001277176 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 147.25-6 chr1 102365458 102365955 + 0.5 NA Intergenic Tigger3d|DNA|TcMar-Tigger -368472 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 150.5-100 chr5 161783719 161784268 + 0.5 NA Intergenic Intergenic -63198 NM_000806 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 147.5-99 chr8 36449114 36449617 + 0.5 NA Intergenic Intergenic -335009 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 146.5-33 chr15 88818675 88819102 + 0.5 NA intron (NM_001369268, intron 1 of 18) L1MB3|LINE|L1 15445 NM_001135 176 Hs.2159 NM_001135 ENSG00000157766 ACAN AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK|SSOAOD aggrecan protein-coding 195.25-7 chr12 57914506 57915068 + 0.5 NA Intergenic Intergenic -18305 NR_148947 283387 Hs.727244 NR_148947 ENSG00000245651 LOC283387 - uncharacterized LOC283387 ncRNA 187.5-50 chr4 35581992 35582462 + 0.5 NA Intergenic L2|LINE|L2 661712 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 184-44 chr5 68223308 68223836 + 0.5 NA intron (NM_181523, intron 1 of 15) intron (NM_181523, intron 1 of 15) 7816 NM_181523 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 193-12 chr11 98842857 98843501 + 0.5 NA Intergenic L1MA3|LINE|L1 -177770 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 156.75-42 chr17 48408517 48408999 + 0.5 NA intron (NM_001075099, intron 1 of 12) intron (NM_001075099, intron 1 of 12) 21456 NM_003726 8631 Hs.316931 NM_003726 ENSG00000141293 SKAP1 HEL-S-81p|SCAP1|SKAP55 src kinase associated phosphoprotein 1 protein-coding 160-46 chr2 185807698 185808104 + 0.5 NA exon (NM_173651, exon 17 of 23) exon (NM_173651, exon 17 of 23) -7750 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 165.5-13 chr10 11467479 11468064 + 0.5 NA intron (NM_014688, intron 14 of 14) intron (NM_014688, intron 14 of 14) 64509 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 183-21 chr18 792877 793343 + 0.5 NA intron (NM_005433, intron 1 of 11) AluSx3|SINE|Alu 19132 NM_005433 7525 Hs.194148 NM_005433 ENSG00000176105 YES1 HsT441|P61-YES|Yes|c-yes YES proto-oncogene 1, Src family tyrosine kinase protein-coding 174.5-35 chr18 68246318 68246709 + 0.5 NA Intergenic L1MD2|LINE|L1 -431691 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 158.5-83 chr5 29307711 29308238 + 0.5 NA Intergenic L1MB8|LINE|L1 88002 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 183-28 chr2 122986799 122987457 + 0.5 NA Intergenic Intergenic 86353 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 172.75-11 chr11 46985354 46985747 + 0.5 NA intron (NM_001278222, intron 1 of 7) intron (NM_001278222, intron 1 of 7) 48789 NR_103472 79096 Hs.368296 NM_024113 ENSG00000149179 C11orf49 - chromosome 11 open reading frame 49 protein-coding 156.25-60 chr4 22694681 22695141 + 0.5 NA intron (NR_102356, intron 1 of 2) intron (NR_102356, intron 1 of 2) 1974 NR_102355 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 163.25-36 chr2 22660724 22661196 + 0.5 NA Intergenic L1MA9|LINE|L1 124481 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 181.25-18 chr15 70139921 70140556 + 0.5 NA Intergenic Intergenic -42321 NM_020908 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 148.25-31 chr15 65894496 65895026 + 0.5 NA TTS (NM_032445).2 TTS (NM_032445).2 25270 NM_001206836 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 148-74 chr5 85219548 85219998 + 0.5 NA Intergenic Intergenic -834893 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 164.25-73 chr5 94533108 94533750 + 0.5 NA intron (NM_001145678, intron 3 of 20) AluSg|SINE|Alu 85175 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 147.5-84 chr6 9567050 9567560 + 0.5 NA Intergenic MER70A|LTR|ERVL -837197 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 181-22 chr2 67082478 67082985 + 0.5 NA Intergenic Intergenic -3715 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 150-41 chr2 116383050 116383498 + 0.5 NA Intergenic L1MCb|LINE|L1 1039459 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 152-23 chr14 82569073 82569533 + 0.5 NA Intergenic MIRb|SINE|MIR -73329 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 253.75-10 chr14 83869942 83870949 + 0.5 NA Intergenic Intergenic 1227813 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 190.75-46 chr3 113716595 113717155 + 0.5 NA 3' UTR (NM_001308445, exon 5 of 5) 3' UTR (NM_001308445, exon 5 of 5) -20229 NR_111981 205717 Hs.632570 NM_001009899 ENSG00000176542 USF3 KIAA2018 upstream transcription factor family member 3 protein-coding 264.25-17 chr6 65190339 65191213 + 0.5 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -110642 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 159-77 chr6 150084040 150084484 + 0.5 NA Intergenic Intergenic -15141 NM_024518 79465 Hs.15422 NM_024518 ENSG00000131019 ULBP3 N2DL-3|NKG2DL3|RAET1N UL16 binding protein 3 protein-coding 172-21 chr14 20095629 20096232 + 0.5 NA Intergenic (ATATCT)n|Simple_repeat|Simple_repeat -21538 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 162.75-53 chr4 45987466 45987976 + 0.5 NA Intergenic L1MA7|LINE|L1 136333 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 215.25-2 chr1 66529622 66530216 + 0.5 NA Intergenic Intergenic -3674 NM_001308203 84251 Hs.132121 NM_032291 ENSG00000118473 SGIP1 - SH3 domain GRB2 like endophilin interacting protein 1 protein-coding 152-63 chr4 78524351 78524822 + 0.5 NA intron (NM_025074, intron 69 of 73) intron (NM_025074, intron 69 of 73) -27184 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 166-48 chr22 35331601 35332126 + 0.5 NA intron (NR_156428, intron 7 of 13) AluSx1|SINE|Alu -3777 NR_037471 100500826 NR_037471 ENSG00000266320 MIR3909 mir-3909 microRNA 3909 ncRNA 174.75-69 chr8 133307986 133308508 + 0.5 NA Intergenic MER65-int|LTR|ERV1 -10943 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 173.25-23 chr13 102167422 102168110 + 0.5 NA intron (NM_175929, intron 1 of 4) intron (NM_175929, intron 1 of 4) -121762 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 169.75-74 chr9 12516806 12517477 + 0.5 NA Intergenic L2a|LINE|L2 -176244 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 198.75-41 chr5 8351241 8351770 + 0.5 NA intron (NR_039984, intron 3 of 5) L1MEc|LINE|L1 106059 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 146.25-51 chr21 22595902 22596307 + 0.5 NA Intergenic Intergenic -483180 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 149.75-87 chr6 146684574 146685040 + 0.5 NA intron (NM_024694, intron 9 of 35) intron (NM_024694, intron 9 of 35) 85835 NM_024694 79747 Hs.720870 NM_024694 ENSG00000118492 ADGB C6orf103|CAPN16 androglobin protein-coding 243.75-18 chr9 70286252 70287022 + 0.5 NA intron (NM_015110, intron 8 of 24) intron (NM_015110, intron 8 of 24) 27659 NM_015110 23137 Hs.534189 NM_015110 ENSG00000198887 SMC5 SMC5L1 structural maintenance of chromosomes 5 protein-coding 148-25 chr13 100894592 100894994 + 0.5 NA intron (NR_047687, intron 2 of 7) MLT1F2|LTR|ERVL-MaLR 49571 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 155.5-47 chr2 88265963 88266430 + 0.5 NA Intergenic AluSq2|SINE|Alu 93057 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 146-64 chr5 6241594 6242110 + 0.5 NA Intergenic L1PA13|LINE|L1 95440 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 153-27 chr16 72142426 72142826 + 0.5 NA intron (NM_031293, intron 5 of 20) L1ME3G|LINE|L1 29529 NM_031293 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 159-44 chr2 214900208 214900637 + 0.5 NA intron (NR_110292, intron 2 of 3) intron (NR_110292, intron 2 of 3) 53475 NR_145773 109617008 NR_145773 ENSG00000207274 SNORA70I - small nucleolar RNA, H/ACA box 70I snoRNA 150.25-78 chr5 15473716 15474186 + 0.5 NA Intergenic Intergenic -26229 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 192 chr1 115906943 115907453 + 0.5 NA Intergenic CR1-3_Croc|LINE|CR1 -12178 NR_125969 101928995 Hs.559119 NR_125969 ENSG00000228127 LINC01649 - long intergenic non-protein coding RNA 1649 ncRNA 156.5-57 chr2 210532394 210532767 + 0.5 NA intron (NM_001369256, intron 1 of 38) intron (NM_001369256, intron 1 of 38) 12862 NM_001369256 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 160.25-27 chr17 49275963 49276445 + 0.5 NA Intergenic AluSx|SINE|Alu 12250 NR_106745 102465137 NR_106745 ENSG00000273500 MIR6129 hsa-mir-6129 microRNA 6129 ncRNA 151.25-103 chr9 3607790 3608232 + 0.5 NA Intergenic L1PA15|LINE|L1 -60075 NR_121586 101929302 Hs.122828 NR_121586 ENSG00000232104 RFX3-AS1 CVAT7 RFX3 antisense RNA 1 ncRNA 367-2 chr1 181889405 181890631 + 0.5 NA Intergenic L1PA7|LINE|L1 171694 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 253.75-22 chr5 52560148 52560974 + 0.5 NA Intergenic Intergenic -227355 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 150.25-62 chr3 38819467 38820004 + 0.5 NA Intergenic L1MB7|LINE|L1 -25725 NM_006514 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 197.25-23 chr17 55335929 55336644 + 0.5 NA Intergenic MIR3|SINE|MIR 70064 NM_001330375 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 150.5-92 chr5 19460446 19460914 + 0.5 NA Intergenic Intergenic 425592 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 156-11 chr10 24906550 24906944 + 0.5 NA intron (NM_020200, intron 3 of 8) intron (NM_020200, intron 3 of 8) 45859 NM_020200 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 150-5 chr1 111456377 111456839 + 0.5 NA intron (NM_001688, intron 4 of 6) intron (NM_001688, intron 4 of 6) 7144 NM_001688 515 Hs.514870 NM_001688 ENSG00000116459 ATP5PB ATP5F1|PIG47 ATP synthase peripheral stalk-membrane subunit b protein-coding 189.75-2 chr1 61957096 61957600 + 0.5 NA intron (NM_001350145, intron 27 of 43) intron (NM_001350145, intron 27 of 43) 111273 NR_162146 113219465 NR_162146 MIR12132 - microRNA 12132 ncRNA 187.5-60 chr6 49710019 49710560 + 0.5 NA intron (NM_001261822, intron 2 of 8) intron (NM_001261822, intron 2 of 8) 3254 NM_001142417 7180 Hs.2042 NM_003296 ENSG00000124490 CRISP2 CRISP-2|CT36|GAPDL5|TPX1|TSP1 cysteine rich secretory protein 2 protein-coding 151.25-76 chr5 156496693 156497131 + 0.5 NA intron (NM_001128209, intron 2 of 7) MLT1I|LTR|ERVL-MaLR 169748 NM_001128209 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 150.25-22 chr11 87087539 87088096 + 0.5 NA intron (NR_033149, intron 3 of 13) AluSp|SINE|Alu 49883 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 154.75-105 chr9 11253087 11253601 + 0.5 NA Intergenic L1PA10|LINE|L1 640138 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 207.75-23 chr20 32322617 32323111 + 0.5 NA intron (NM_004798, intron 5 of 8) intron (NM_004798, intron 5 of 8) -35480 NM_015338 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 233.75-17 chr3 80435478 80436161 + 0.5 NA Intergenic Intergenic -329078 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 166.5-12 chr12 87990021 87990487 + 0.5 NA intron (NM_001363616, intron 7 of 11) intron (NM_001363616, intron 7 of 11) 39147 NM_001363616 160419 Hs.112930 NM_152589 ENSG00000165805 C12orf50 - chromosome 12 open reading frame 50 protein-coding 186.75-18 chr11 95361542 95362014 + 0.5 NA Intergenic MIR|SINE|MIR -129303 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 180-50 chr5 3779763 3780243 + 0.5 NA Intergenic Intergenic 184171 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 146.75-72 chr3 81544112 81544446 + 0.5 NA intron (NM_000158, intron 12 of 15) intron (NM_000158, intron 12 of 15) 217366 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 183.25-66 chr6 83681490 83682092 + 0.5 NA intron (NM_001256717, intron 4 of 29) intron (NM_001256717, intron 4 of 29) 26768 NM_001363677 9892 Hs.368046 NM_014841 ENSG00000065609 SNAP91 AP180|CALM synaptosome associated protein 91 protein-coding 181-59 chr9 73585507 73585989 + 0.5 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 433883 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 191.5-15 chr12 25999914 26000484 + 0.5 NA intron (NM_001164747, intron 2 of 5) intron (NM_001164747, intron 2 of 5) 26444 NM_001164747 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 167.75-72 chr5 25147932 25148425 + 0.5 NA intron (NR_147006, intron 3 of 4) L1MA4|LINE|L1 42478 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 176.5-46 chr2 187962246 187962819 + 0.5 NA Intergenic Intergenic 325159 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 155.5-32 chr14 62138339 62138920 + 0.5 NA intron (NR_104063, intron 1 of 1) intron (NR_104063, intron 1 of 1) 1344 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 275.5-6 chr13 92111196 92111983 + 0.5 NA intron (NM_004466, intron 6 of 7) intron (NM_004466, intron 6 of 7) 240618 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 169-52 chr5 157799697 157800121 + 0.5 NA intron (NM_014666, intron 8 of 11) Tigger3a|DNA|TcMar-Tigger 56197 NM_173491 134353 Hs.23648 NM_173491 ENSG00000155858 LSM11 - LSM11, U7 small nuclear RNA associated protein-coding 186.25-32 chr22 28190107 28190850 + 0.5 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -269391 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 152.5-54 chr2 123582176 123582641 + 0.5 NA Intergenic Intergenic 442766 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 156.25-101 chr9 14928145 14928576 + 0.5 NA Intergenic Intergenic -17365 NM_144966 158326 Hs.50850 NM_144966 ENSG00000164946 FREM1 BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2 FRAS1 related extracellular matrix 1 protein-coding 157.75-85 chr5 5060558 5060950 + 0.5 NA intron (NR_026994, intron 4 of 6) AluSx|SINE|Alu 17557 NR_134266 105374631 Hs.570964 NR_134266 ENSG00000250529 LINC02121 - long intergenic non-protein coding RNA 2121 ncRNA 193.5-45 chr3 95768624 95769151 + 0.5 NA Intergenic Intergenic -85694 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 154.5-94 chr8 87668219 87668612 + 0.5 NA Intergenic L3|LINE|CR1 205600 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 149.5-35 chr17 69985542 69986020 + 0.5 NA Intergenic L1MA2|LINE|L1 24074 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 149.75-84 chr6 82098895 82099222 + 0.5 NA intron (NR_149135, intron 1 of 3) L1PA13|LINE|L1 2707 NR_149135 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 184.5-28 chr13 83528122 83528642 + 0.5 NA Intergenic L1MEf|LINE|L1 354011 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 157.75-79 chr4 132690049 132690624 + 0.5 NA Intergenic Intergenic 99247 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 150.75-38 chr2 50108686 50109025 + 0.5 NA intron (NM_001330093, intron 18 of 22) L1MC|LINE|L1 -134652 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 169-18 chr14 56265399 56266044 + 0.5 NA intron (NM_021255, intron 2 of 5) L1ME1|LINE|L1 147310 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 175.5-10 chr10 88154260 88154733 + 0.5 NA Intergenic Intergenic 290871 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 189.25-47 chr6 136029427 136029997 + 0.5 NA intron (NM_018945, intron 2 of 12) intron (NM_018945, intron 2 of 12) 43115 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 149.75-41 chr2 167218976 167219469 + 0.5 NA intron (NM_001199144, intron 3 of 8) intron (NM_001199144, intron 3 of 8) 31850 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 196.75-13 chr13 67028982 67029551 + 0.5 NA intron (NM_001318372, intron 2 of 4) intron (NM_001318372, intron 2 of 4) 38380 NR_046637 100874087 Hs.606903 NR_046637 ENSG00000233840 PCDH9-AS4 - PCDH9 antisense RNA 4 ncRNA 194.5-18 chr13 88588193 88588697 + 0.5 NA Intergenic Intergenic -38408 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 164.25-79 chr6 166512082 166512728 + 0.5 NA intron (NM_001006932, intron 4 of 21) L1MB4|LINE|L1 -2972 NR_031734 100302141 NR_031734 ENSG00000222958 MIR1913 MIRN1913|hsa-mir-1913 microRNA 1913 ncRNA 218-12 chr2 155639697 155640183 + 0.5 NA Intergenic Intergenic 614991 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 174.5-28 chr14 87828570 87829176 + 0.5 NA Intergenic L1MD1|LINE|L1 164309 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 163.75-17 chr11 99240713 99241289 + 0.5 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 220052 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 173.25-81 chrX 72462736 72463356 + 0.5 NA intron (NR_051952, intron 7 of 9) intron (NR_051952, intron 7 of 9) 109797 NM_018486 55869 Hs.310536 NM_018486 ENSG00000147099 HDAC8 CDA07|CDLS5|HD8|HDACL1|KDAC8|MRXS6|RPD3|WTS histone deacetylase 8 protein-coding 195.5-7 chr10 120327713 120328326 + 0.5 NA Intergenic Intergenic 27204 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 194-60 chr9 79337852 79338423 + 0.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -192471 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 189-57 chr7 9117569 9118105 + 0.5 NA Intergenic Intergenic -516433 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 147.5-68 chr4 66149462 66149895 + 0.5 NA Intergenic LOR1-int|LTR|ERV1 -127146 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 196-11 chr12 45031464 45031951 + 0.5 NA intron (NM_001004329, intron 2 of 3) L3|LINE|CR1 19392 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 146.25-58 chr3 28307893 28308299 + 0.5 NA intron (NM_001331186, intron 3 of 4) MLT1D|LTR|ERVL-MaLR -40625 NR_136708 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 154-66 chr3 50936320 50936873 + 0.5 NA intron (NM_004947, intron 5 of 52) L1MD2|LINE|L1 261516 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 169.75-38 chr17 30207458 30207971 + 0.5 NA intron (NM_001045, intron 13 of 14) intron (NM_001045, intron 13 of 14) 27983 NM_001045 6532 Hs.29792 NM_001045 ENSG00000108576 SLC6A4 5-HTT|5-HTTLPR|5HTT|HTT|OCD1|SERT|SERT1|hSERT solute carrier family 6 member 4 protein-coding 160.75-81 chr4 64370252 64370869 + 0.5 NA intron (NM_001363796, intron 2 of 11) intron (NM_001363796, intron 2 of 11) 38890 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 225.75-26 chr6 22096172 22096729 + 0.5 NA intron (NR_015410, intron 8 of 11) AluJr|SINE|Alu 50743 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 175-10 chr11 23530522 23530957 + 0.5 NA Intergenic L1MB1|LINE|L1 -111549 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 253-6 chr2 15482812 15483429 + 0.5 NA intron (NR_052013, intron 12 of 50) intron (NR_052013, intron 12 of 50) 78214 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 151.5-65 chr3 35211860 35212230 + 0.5 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 181978 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 213.25-6 chr11 15418015 15418570 + 0.5 NA Intergenic HAL1|LINE|L1 -225593 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 179.5-79 chr8 118656062 118656617 + 0.5 NA intron (NR_038210, intron 2 of 4) (TA)n|Simple_repeat|Simple_repeat -34376 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 172-46 chr21 29962997 29963418 + 0.5 NA Intergenic Intergenic -23155 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 180.5-35 chr2 39060968 39061576 + 0.5 NA intron (NM_005633, intron 2 of 22) intron (NM_005633, intron 2 of 22) 59191 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 178.25-17 chr14 56376372 56376888 + 0.5 NA Intergenic MIRb|SINE|MIR -137701 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 190.75-27 chr16 54863027 54863461 + 0.5 NA Intergenic Intergenic -15011 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 154.25-77 chr7 77650174 77650688 + 0.5 NA Intergenic Intergenic 45834 NR_134251 100505854 Hs.72451 NR_038361 ENSG00000214293 APTR RSBN1L-AS1 Alu-mediated CDKN1A/p21 transcriptional regulator ncRNA 213.25-5 chr10 62825923 62826530 + 0.5 NA Intergenic Intergenic -7059 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 151.25-86 chr7 112356067 112356415 + 0.5 NA Intergenic Intergenic -66903 NM_001007245 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 160.25-62 chr5 147560178 147560609 + 0.5 NA intron (NR_038902, intron 1 of 3) intron (NR_038902, intron 1 of 3) 399 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 195.75-27 chr16 63578732 63579178 + 0.5 NA Intergenic Intergenic -1542517 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 191.25-41 chr2 186072871 186073441 + 0.5 NA intron (NR_110218, intron 3 of 5) intron (NR_110218, intron 3 of 5) 13161 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 178-44 chr3 136569529 136570013 + 0.5 NA intron (NM_005862, intron 4 of 33) intron (NM_005862, intron 4 of 33) 182607 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 218.5-44 chr9 93186078 93186812 + 0.5 NA intron (NM_006648, intron 1 of 28) intron (NM_006648, intron 1 of 28) 1515 NM_001282394 65268 Hs.654856 NM_006648 ENSG00000165238 WNK2 NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43 WNK lysine deficient protein kinase 2 protein-coding 152.75-4 chr1 61514956 61515526 + 0.5 NA Intergenic L2a|LINE|L2 -139001 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 146.25-101 chr8 126871989 126872378 + 0.5 NA Intergenic MER46C|DNA|TcMar-Tigger -140971 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 160.5-8 chr1 196573014 196573513 + 0.5 NA intron (NM_001287820, intron 1 of 26) intron (NM_001287820, intron 1 of 26) 9218 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 193-27 chr2 185603215 185603801 + 0.5 NA Intergenic Intergenic 135211 NR_110216 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 147.75-49 chr18 28493615 28494183 + 0.5 NA Intergenic Intergenic -316769 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 166-15 chr11 73022297 73022782 + 0.5 NA intron (NM_014824, intron 3 of 19) L1MC3|LINE|L1 119779 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 185.5-35 chr2 55840106 55840544 + 0.5 NA Intergenic L2c|LINE|L2 83457 NM_001039348 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 146-53 chr3 109212853 109213364 + 0.5 NA Intergenic Intergenic 34943 NR_026767 677779 Hs.618669 NM_001040054 ENSG00000214381 LINC00488 C3orf66 long intergenic non-protein coding RNA 488 ncRNA 184.5-9 chr1 147284402 147284950 + 0.5 NA intron (NM_001348462, intron 16 of 22) intron (NM_001348462, intron 16 of 22) 41534 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 187.25-5 chr1 157314228 157314865 + 0.5 NA Intergenic L1M4|LINE|L1 -175955 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 171.75-15 chr11 58508489 58508970 + 0.5 NA promoter-TSS (NM_001005218) promoter-TSS (NM_001005218) -624 NM_001005218 219968 Hs.553647 NM_001005218 ENSG00000198283 OR5B21 - olfactory receptor family 5 subfamily B member 21 protein-coding 168-54 chr4 65330548 65331067 + 0.5 NA 3' UTR (NM_001281767, exon 17 of 17) 3' UTR (NM_001281767, exon 17 of 17) -326307 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 211.75-33 chr5 174887167 174887777 + 0.5 NA Intergenic Intergenic 108259 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 200.25-51 chr8 96873475 96874068 + 0.5 NA intron (NM_016134, intron 3 of 7) intron (NM_016134, intron 3 of 7) 228529 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 159.25-45 chr22 24704013 24704585 + 0.5 NA Intergenic AluSg|SINE|Alu -45152 NR_024593 646074 Hs.531306 NM_001025230 POM121L10P - POM121 transmembrane nucleoporin like 10, pseudogene pseudo 188.75-25 chr18 34011753 34012487 + 0.5 NA intron (NM_001353232, intron 6 of 9) intron (NM_001353232, intron 6 of 9) 36492 NM_001353236 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 159-65 chr5 97087040 97087523 + 0.5 NA Intergenic Intergenic 55330 NM_153234 167410 Hs.656702 NM_153234 ENSG00000145721 LIX1 C5orf11|Lft limb and CNS expressed 1 protein-coding 221.75-25 chr3 108083293 108084121 + 0.5 NA intron (NM_198793, intron 1 of 8) intron (NM_198793, intron 1 of 8) 7381 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 188.5 chr1 59307855 59308411 + 0.5 NA intron (NM_018291, intron 1 of 15) intron (NM_018291, intron 1 of 15) -1899 NM_001350799 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 160-35 chr19 36565684 36566099 + 0.5 NA intron (NM_001145650, intron 2 of 4) L1M4|LINE|L1 -7179 NR_110706 101927599 Hs.515376 NR_110703 ENSG00000233527 ZNF529-AS1 - ZNF529 antisense RNA 1 ncRNA 158.25-13 chr10 57221124 57221536 + 0.5 NA Intergenic Intergenic 83229 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 147-80 chr4 91128917 91129387 + 0.5 NA intron (NM_001145065, intron 10 of 10) MLT1L|LTR|ERVL-MaLR 894121 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 163.25-34 chr18 21205355 21205926 + 0.5 NA Intergenic Intergenic -36602 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 156.75-94 chr7 52550810 52551262 + 0.5 NA Intergenic Intergenic -484597 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 216.75-31 chr7 79400145 79400878 + 0.5 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -52446 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 171.75-80 chr7 120135241 120135816 + 0.5 NA Intergenic L1MA3|LINE|L1 -137647 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 180.5-21 chr14 82280140 82280780 + 0.5 NA Intergenic MIRc|SINE|MIR -362172 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 152.75-47 chr2 71369578 71370089 + 0.5 NA intron (NM_001252613, intron 7 of 27) intron (NM_001252613, intron 7 of 27) 38051 NM_014497 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 217-18 chr20 43989137 43989811 + 0.5 NA intron (NM_001098797, intron 2 of 8) intron (NM_001098797, intron 2 of 8) 43578 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 181.75-63 chr8 34804605 34805176 + 0.5 NA intron (NR_125746, intron 2 of 3) AluSx1|SINE|Alu 20969 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 189.5-51 chr5 19269707 19270355 + 0.5 NA Intergenic Intergenic 616241 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 155-35 chr16 76375482 76376030 + 0.5 NA intron (NR_136213, intron 3 of 23) intron (NR_136213, intron 3 of 23) 65904 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 168.5-32 chr15 63927176 63927535 + 0.5 NA promoter-TSS (NR_120344) promoter-TSS (NR_120344) -919 NR_120344 101928988 Hs.673214 NR_120344 ENSG00000259351 LOC101928988 - uncharacterized LOC101928988 ncRNA 179 chr1 155421987 155422624 + 0.5 NA intron (NM_018489, intron 5 of 27) intron (NM_018489, intron 5 of 27) -10875 NR_034180 645682 Hs.632482 NR_034180 ENSG00000237872 POU5F1P4 OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1 POU class 5 homeobox 1 pseudogene 4 pseudo 162.75-17 chr11 112348741 112349252 + 0.5 NA intron (NR_126004, intron 2 of 3) LTR16B1|LTR|ERVL 78247 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LINC02762 - long intergenic non-protein coding RNA 2762 ncRNA 173.5-36 chr2 186678937 186679375 + 0.5 NA 3' UTR (NM_001144999, exon 30 of 30) 3' UTR (NM_001144999, exon 30 of 30) -14904 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 157-82 chr6 130780007 130780455 + 0.5 NA Intergenic Intergenic -47174 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 183.75-48 chr2 125182766 125183275 + 0.5 NA Intergenic Intergenic 934965 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 212.75-29 chr5 118356029 118356694 + 0.5 NA intron (NR_104610, intron 9 of 9) intron (NR_104610, intron 9 of 9) 73787 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 149-26 chr14 90737153 90737684 + 0.5 NA intron (NM_001320421, intron 4 of 20) L1MB8|LINE|L1 40085 NR_135190 105370622 Hs.662373 NR_135190 ENSG00000258716 LOC105370622 - uncharacterized LOC105370622 ncRNA 147.5-100 chr8 49122207 49122609 + 0.5 NA Intergenic Intergenic 50064 NM_001256598 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 181-16 chr14 73741827 73742521 + 0.5 NA intron (NM_001043318, intron 1 of 11) intron (NM_001043318, intron 1 of 11) -16573 NR_039727 100616158 NR_039727 ENSG00000264741 MIR4505 mir-4505 microRNA 4505 ncRNA 147.5-5 chr1 182465838 182466276 + 0.5 NA intron (NM_001137669, intron 4 of 21) L1PA4|LINE|L1 15911 NM_001137669 353299 Hs.121200 NM_032267 ENSG00000121446 RGSL1 RGSL|RGSL2 regulator of G protein signaling like 1 protein-coding 150.5-107 chr6 124780633 124781210 + 0.5 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -181624 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 160.75-105 chr8 119603953 119604437 + 0.5 NA intron (NM_001330600, intron 9 of 25) AluSx1|SINE|Alu -11187 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 148.25-6 chr1 236787132 236787515 + 0.5 NA Intergenic L2c|LINE|L2 -7958 NM_001291939 4548 Hs.498187 NM_000254 ENSG00000116984 MTR HMAG|MS|cblG 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 175-24 chr20 41794743 41795246 + 0.5 NA Intergenic MLT2D|LTR|ERVL -176617 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 148.25-9 chr10 86030188 86030590 + 0.5 NA intron (NM_017551, intron 4 of 15) intron (NM_017551, intron 4 of 15) 234399 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 166.25-68 chr8 98252837 98253210 + 0.5 NA intron (NR_135747, intron 2 of 11) MER44B|DNA|TcMar-Tigger 41212 NR_135745 79815 Hs.309489 NM_024759 ENSG00000104361 NIPAL2 NPAL2 NIPA like domain containing 2 protein-coding 175.5-91 chr7 92829548 92830045 + 0.5 NA intron (NM_001259, intron 2 of 7) intron (NM_001259, intron 2 of 7) 4163 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 163-71 chr5 165132647 165133160 + 0.5 NA Intergenic Intergenic 662624 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 176.25-45 chr3 32048741 32049257 + 0.5 NA Intergenic MER41B|LTR|ERV1 -57512 NM_015141 23171 Hs.82432 NM_015141 ENSG00000152642 GPD1L GPD1-L glycerol-3-phosphate dehydrogenase 1 like protein-coding 173-53 chr4 36238445 36239017 + 0.5 NA intron (NR_146894, intron 1 of 32) intron (NR_146894, intron 1 of 32) 5208 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 174.75-49 chr4 84124486 84125048 + 0.5 NA intron (NR_125909, intron 7 of 8) L1ME3Cz|LINE|L1 174402 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 221-2 chr1 152334830 152335441 + 0.5 NA intron (NR_103778, intron 3 of 6) MER49|LTR|ERV1 -1933 NR_103779 339400 Hs.23783 NR_103778 ENSG00000237975 FLG-AS1 - FLG antisense RNA 1 ncRNA 177-14 chr12 22893163 22893590 + 0.5 NA Intergenic A-rich|Low_complexity|Low_complexity 268205 NM_001039481 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 182.25-59 chr8 64333616 64334161 + 0.5 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 34670 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 172.25-22 chr13 105532128 105532650 + 0.5 NA Intergenic Intergenic -26708 NR_040247 282706 Hs.558713 NR_040247 ENSG00000232307 DAOA-AS1 DAOA-AS|DAOAAS|G30 DAOA antisense RNA 1 ncRNA 147.5-104 chr8 93080008 93080537 + 0.5 NA Intergenic L1PA6|LINE|L1 50521 NR_107051 102467005 NR_107051 ENSG00000277063 MIR8084 hsa-mir-8084 microRNA 8084 ncRNA 164-15 chr11 115702573 115702991 + 0.5 NA Intergenic AluSz|SINE|Alu 31980 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 152.25-82 chr5 120327385 120327819 + 0.5 NA Intergenic Intergenic -136676 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 198-27 chr4 79657009 79657474 + 0.5 NA Intergenic L1PA15-16|LINE|L1 164648 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 146.5-77 chr4 64686190 64686660 + 0.5 NA Intergenic Intergenic -276965 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 149-94 chr7 95649447 95649895 + 0.5 NA Intergenic HAL1|LINE|L1 -53155 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 154.25-11 chr10 61331129 61331560 + 0.5 NA Intergenic Intergenic -121295 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 199.5-45 chr6 86218019 86218489 + 0.5 NA Intergenic Intergenic -539521 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 180.75-43 chr3 106500870 106501464 + 0.5 NA Intergenic L1MEh|LINE|L1 -631766 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 185.25-49 chr2 186262004 186262445 + 0.5 NA Intergenic MLT1A|LTR|ERVL-MaLR -175907 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 146.25-8 chr1 240096375 240096879 + 0.5 NA intron (NM_020066, intron 1 of 17) intron (NM_020066, intron 1 of 17) 4744 NM_001348094 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 149.5-23 chr13 87610169 87610476 + 0.5 NA intron (NR_033829, intron 1 of 5) intron (NR_033829, intron 1 of 5) 8418 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 215-16 chr20 45442509 45443318 + 0.5 NA intron (NR_159957, intron 2 of 3) MER41B|LTR|ERV1 15491 NR_159957 105372631 Hs.729907 NR_159957 LOC105372631 - uncharacterized LOC105372631 ncRNA 161.75-88 chr8 80684034 80684501 + 0.5 NA intron (NM_001033723, intron 4 of 8) MER112|DNA|hAT-Charlie 190201 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 171.25-59 chr8 59300674 59301230 + 0.5 NA Intergenic Intergenic 181742 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 176.25-35 chr17 60929142 60929693 + 0.5 NA intron (NM_001330413, intron 13 of 25) AluJr|SINE|Alu 251566 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 191.75-7 chr10 52666280 52666751 + 0.5 NA intron (NR_155748, intron 1 of 2) L2|LINE|L2 88889 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 185.75-48 chr21 27955499 27956010 + 0.5 NA Intergenic Intergenic -57609 NR_027246 246705 Hs.505079 NM_145180 ENSG00000178457 LINC00314 C21orf94|NCRNA00314 long intergenic non-protein coding RNA 314 ncRNA 191.25-46 chr3 63542065 63542726 + 0.5 NA intron (NM_001130003, intron 3 of 5) intron (NM_001130003, intron 3 of 5) 7656 NR_046677 100874016 Hs.441275 NR_046677 ENSG00000241359 SYNPR-AS1 - SYNPR antisense RNA 1 ncRNA 158.75-41 chr2 83035407 83035732 + 0.5 NA Intergenic Intergenic 178766 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 177.75-43 chr22 39735865 39736336 + 0.5 NA Intergenic L2a|LINE|L2 157660 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 147.75-16 chr10 47427167 47427555 + 0.5 NA Intergenic L1PA17|LINE|L1 -12886 NR_134499 105378292 Hs.131331 NR_134499 LOC105378292 - uncharacterized LOC105378292 ncRNA 160.5-110 chr8 14690980 14691483 + 0.5 NA intron (NM_139167, intron 1 of 7) L2a|LINE|L2 162279 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 147.75-4 chr1 65800512 65801057 + 0.5 NA intron (NM_002600, intron 1 of 16) intron (NM_002600, intron 1 of 16) 7889 NM_002600 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 173.5-67 chr5 100551861 100552317 + 0.5 NA intron (NM_198507, intron 1 of 2) intron (NM_198507, intron 1 of 2) 16715 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 146.75-15 chr10 72668404 72668802 + 0.5 NA Intergenic AluJr4|SINE|Alu -23528 NR_073062 90550 Hs.591366 NM_138357 ENSG00000156026 MCU C10orf42|CCDC109A|HsMCU mitochondrial calcium uniporter protein-coding 151.5-45 chr19 41794595 41795038 + 0.5 NA Intergenic L1MC4a|LINE|L1 -1771 NM_001815 1084 Hs.11 NM_001815 ENSG00000170956 CEACAM3 CD66D|CEA|CGM1|W264|W282 carcinoembryonic antigen related cell adhesion molecule 3 protein-coding 162-50 chr3 185554322 185554909 + 0.5 NA Intergenic AluY|SINE|Alu -2027 NM_139248 200879 Hs.68864 NM_139248 ENSG00000163898 LIPH AH|ARWH2|HYPT7|LAH2|LPDLR|PLA1B|mPA-PLA1 lipase H protein-coding 203.5-48 chr3 191588153 191588621 + 0.5 NA intron (NR_120606, intron 6 of 6) intron (NR_120606, intron 6 of 6) 127224 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 187.5-14 chr13 94329887 94330319 + 0.5 NA intron (NM_005708, intron 6 of 8) intron (NM_005708, intron 6 of 8) -142112 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 172-50 chr3 61665788 61666239 + 0.5 NA intron (NM_002841, intron 1 of 29) intron (NM_002841, intron 1 of 29) 104442 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 180.75-65 chr8 4279509 4280004 + 0.5 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 715158 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 158.75-45 chr20 2608428 2608949 + 0.5 NA intron (NM_080751, intron 11 of 19) intron (NM_080751, intron 11 of 19) -43944 NR_027700 10528 Hs.376064 NM_006392 ENSG00000101361 NOP56 NOL5A|SCA36 NOP56 ribonucleoprotein protein-coding 209.5-49 chr8 83893037 83893655 + 0.5 NA Intergenic Intergenic -289441 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 151.5-69 chr3 135653960 135654341 + 0.5 NA Intergenic L1MEg|LINE|L1 -311578 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 156.75-4 chr1 66987615 66988098 + 0.5 NA 3' UTR (NM_001146111, exon 16 of 16) 3' UTR (NM_001146111, exon 16 of 16) 57600 NM_001077704 57708 Hs.605432 NM_020948 ENSG00000198160 MIER1 ER1|MI-ER1 MIER1 transcriptional regulator protein-coding 154.25-65 chr5 113199553 113200144 + 0.5 NA intron (NM_001085377, intron 3 of 18) intron (NM_001085377, intron 3 of 18) 95090 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 185.5-18 chr11 26783159 26783846 + 0.5 NA Intergenic THE1D-int|LTR|ERVL-MaLR -61442 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 166-2 chr1 75864242 75864880 + 0.5 NA intron (NM_002440, intron 8 of 19) L1ME3B|LINE|L1 67679 NM_002440 4438 Hs.216639 NM_002440 ENSG00000057468 MSH4 - mutS homolog 4 protein-coding 164.25-41 chr19 6315615 6316090 + 0.5 NA intron (NM_133492, intron 1 of 5) AluSg|SINE|Alu 17760 NM_133492 125981 Hs.352609 NM_133492 ENSG00000167769 ACER1 ALKCDase1|ASAH3 alkaline ceramidase 1 protein-coding 152.5-116 chrX 77776508 77776937 + 0.5 NA intron (NM_000489, intron 1 of 34) Tigger9b|DNA|TcMar-Tigger 9494 NM_000489 546 Hs.533526 NM_000489 ENSG00000085224 ATRX JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX ATRX chromatin remodeler protein-coding 149.75-61 chr3 161876111 161876681 + 0.5 NA Intergenic L1PA16|LINE|L1 379588 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 213.5-35 chr5 63814365 63814949 + 0.5 NA Intergenic MSTA|LTR|ERVL-MaLR 147635 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 188.5-22 chr17 28082913 28083566 + 0.5 NA intron (NM_016231, intron 1 of 10) L2a|LINE|L2 40562 NM_016231 51701 Hs.208759 NM_016231 ENSG00000087095 NLK - nemo like kinase protein-coding 204.25-9 chr14 29196123 29196725 + 0.5 NA Intergenic L1MC3|LINE|L1 -410637 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 165-23 chr13 76340163 76340567 + 0.5 NA Intergenic Arthur1|DNA|hAT-Tip100 -405233 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 178.75-31 chr2 151959231 151959923 + 0.5 NA intron (NM_000726, intron 2 of 13) intron (NM_000726, intron 2 of 13) 12475 NM_001330118 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 231.5-19 chr20 7297811 7298631 + 0.5 NA Intergenic L1MB3|LINE|L1 9211 NR_135005 101929288 Hs.738005 NR_135005 ENSG00000261249 LINC01751 - long intergenic non-protein coding RNA 1751 ncRNA 195.75-47 chr3 109986544 109987118 + 0.5 NA Intergenic Intergenic 384003 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 176.5-14 chr12 34490191 34490579 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 467889 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 177.75-32 chr2 151846012 151846467 + 0.5 NA intron (NM_000726, intron 12 of 13) MER81|DNA|hAT-Blackjack -17818 NM_001037174 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 151.75-51 chr2 149400503 149401053 + 0.5 NA intron (NM_194317, intron 1 of 4) intron (NM_194317, intron 1 of 4) 70191 NM_194317 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 198.25-48 chr6 46532409 46533158 + 0.5 NA non-coding (NR_125837, exon 3 of 3) non-coding (NR_125837, exon 3 of 3) -40716 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 147-51 chr2 125004949 125005384 + 0.5 NA Intergenic Intergenic 979879 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 167.5-18 chr12 38427495 38428000 + 0.5 NA Intergenic Intergenic 110973 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 195.75-15 chr11 55667708 55668359 + 0.5 NA Intergenic Intergenic 2866 NM_001004704 219432 Hs.511921 NM_001004704 ENSG00000181903 OR4C6 OR11-138 olfactory receptor family 4 subfamily C member 6 protein-coding 159.5-56 chr3 191129450 191129960 + 0.5 NA Intergenic Intergenic -69536 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 157.5-69 chr4 95806077 95806577 + 0.5 NA Intergenic Intergenic -33766 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 155.25-67 chr4 65075514 65076058 + 0.5 NA Intergenic Intergenic -71286 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 150-95 chr9 4182816 4183286 + 0.5 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) -30868 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 156.75-100 chr8 119408884 119409413 + 0.5 NA Intergenic Intergenic -7298 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 173.75-27 chr16 76744533 76744971 + 0.5 NA Intergenic Intergenic 109754 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 165.5-95 chr8 79041720 79042209 + 0.5 NA Intergenic MLT2B2|LTR|ERVL 204435 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 147-79 chr4 62546979 62547433 + 0.5 NA Intergenic MER39|LTR|ERV1 -385441 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 264.75-6 chr2 12560634 12561390 + 0.5 NA intron (NR_110196, intron 5 of 5) L1MA10|LINE|L1 -155860 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 159-6 chr1 199246394 199246879 + 0.5 NA intron (NR_147896, intron 3 of 3) intron (NR_147896, intron 3 of 3) 98038 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 187.75-39 chr20 2121423 2122028 + 0.5 NA intron (NM_080836, intron 3 of 3) L2a|LINE|L2 19898 NM_080836 140901 Hs.100057 NM_080836 ENSG00000125834 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 186.5-27 chr2 78972646 78973069 + 0.5 NA Intergenic L1ME1|LINE|L1 -52845 NM_001008387 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 214.75-34 chr4 70287861 70288690 + 0.5 NA Intergenic L1M5|LINE|L1 45659 NM_005212 1448 Hs.54415 NM_005212 ENSG00000171209 CSN3 CNS10|CSN10|CSNK|KCA casein kappa protein-coding 153-45 chr2 237145379 237145983 + 0.5 NA Intergenic Intergenic 59792 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 191.25-14 chr10 115358890 115359618 + 0.5 NA intron (NM_207303, intron 19 of 28) intron (NM_207303, intron 19 of 28) 265889 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 174.75-30 chr2 51255953 51256600 + 0.5 NA intron (NR_135237, intron 2 of 10) L1MA4A|LINE|L1 223675 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 199-27 chr4 53624112 53624663 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR 31431 NR_046827 100873955 Hs.351074 NR_046827 LNX1-AS2 - LNX1 antisense RNA 2 ncRNA 167.75-13 chr11 75401763 75402155 + 0.5 NA intron (NM_001260507, intron 2 of 5) intron (NM_001260507, intron 2 of 5) 1568 NR_000005 6079 Hs.689081 NR_000005 ENSG00000206941 SNORD15A RNU15A|SNORNA|U15A small nucleolar RNA, C/D box 15A snoRNA 156.75-18 chr10 105843835 105844374 + 0.5 NA Intergenic Intergenic -23771 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 151.25-23 chr13 78265814 78266215 + 0.5 NA intron (NR_047001, intron 2 of 5) intron (NR_047001, intron 2 of 5) 211159 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 196.25-12 chr12 109937804 109938310 + 0.5 NA intron (NM_001330153, intron 17 of 18) intron (NM_001330153, intron 17 of 18) 37480 NM_032300 84260 Hs.410924 NM_032300 ENSG00000139437 TCHP TpMs trichoplein keratin filament binding protein-coding 230.5-2 chr1 64481671 64482225 + 0.5 NA intron (NM_020925, intron 1 of 26) intron (NM_020925, intron 1 of 26) 11819 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 199.25-63 chr7 46021781 46022335 + 0.5 NA Intergenic L1MEd|LINE|L1 -100786 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 215-28 chr5 30117945 30118519 + 0.5 NA Intergenic Intergenic 237672 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 206-3 chr1 108674055 108674555 + 0.5 NA Intergenic AluY|SINE|Alu -12779 NM_144584 113802 Hs.7962 NM_144584 ENSG00000162639 HENMT1 C1orf59|HEN1 HEN methyltransferase 1 protein-coding 158.5-65 chr3 5447934 5448372 + 0.5 NA Intergenic L1M4|LINE|L1 -197898 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 151.5-25 chr14 46683067 46683496 + 0.5 NA Intergenic L1MA4A|LINE|L1 -31500 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 221.25-23 chr3 168830463 168831070 + 0.5 NA TTS (NR_021485) TTS (NR_021485) -71179 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 215-5 chr14 52142635 52143395 + 0.5 NA Intergenic Intergenic -73956 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 156-3 chr1 76349546 76350045 + 0.5 NA intron (NM_001349111, intron 3 of 5) intron (NM_001349111, intron 3 of 5) 275049 NM_001349106 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 164.5-23 chr16 14176354 14176900 + 0.5 NA intron (NM_001308142, intron 3 of 16) intron (NM_001308142, intron 3 of 16) -10059 NM_001365416 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 159.5-66 chr4 73807877 73808339 + 0.5 NA Intergenic L1PA15|LINE|L1 -28570 NM_002993 6372 Hs.164021 NM_002993 ENSG00000124875 CXCL6 CKA-3|GCP-2|GCP2|SCYB6 C-X-C motif chemokine ligand 6 protein-coding 158-90 chr8 77143824 77144380 + 0.5 NA Intergenic Intergenic -143058 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 158.25-115 chr8 126643215 126643729 + 0.5 NA Intergenic L1PA8A|LINE|L1 -84994 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 239.75-3 chr10 20736424 20737250 + 0.5 NA Intergenic MIR3|SINE|MIR 160765 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 187.75-51 chr4 31738433 31739016 + 0.5 NA Intergenic Intergenic 232180 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 162.5-72 chr5 109769733 109770216 + 0.5 NA intron (NM_002372, intron 6 of 21) intron (NM_002372, intron 6 of 21) 80608 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 183-7 chr10 65716680 65717127 + 0.5 NA intron (NR_120647, intron 4 of 5) intron (NR_120647, intron 4 of 5) 145478 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 199.5-6 chr12 60436372 60437156 + 0.5 NA Intergenic L1MC2|LINE|L1 747394 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 168-48 chr3 85010223 85010815 + 0.5 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) 51530 NM_001167674 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 148.75-41 chr19 44545220 44545711 + 0.5 NA intron (NR_027754, intron 3 of 7) intron (NR_027754, intron 3 of 7) 11452 NR_027754 388550 Hs.446909 NR_027754 ENSG00000230666 CEACAM22P - carcinoembryonic antigen related cell adhesion molecule 22, pseudogene pseudo 162.75-13 chr10 106132953 106133487 + 0.5 NA Intergenic Intergenic -6945 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 147.25-62 chr4 24069667 24070214 + 0.5 NA intron (NM_001330752, intron 2 of 13) MIRc|SINE|MIR -179893 NR_148984 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 164-5 chr10 46014609 46015035 + 0.5 NA intron (NM_005437, intron 4 of 9) intron (NM_005437, intron 4 of 9) 4715 NM_001145262 8031 Hs.643658 NM_005437 ENSG00000266412 NCOA4 ARA70|ELE1|PTC3|RFG nuclear receptor coactivator 4 protein-coding 165.25-3 chr1 168922470 168922984 + 0.5 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 135786 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 171.25-27 chr18 634954 635437 + 0.5 NA intron (NM_199167, intron 6 of 8) MER1B|DNA|hAT-Charlie 18495 NM_199167 27098 Hs.732341 NM_014410 ENSG00000079101 CLUL1 RA337M clusterin like 1 protein-coding 154.75-68 chr3 190967935 190968471 + 0.5 NA Intergenic L1ME1|LINE|L1 90273 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 175-26 chr21 14254631 14255323 + 0.5 NA Intergenic Intergenic -18822 NR_003087 150000 Hs.366575 NM_138726 ENSG00000243064 ABCC13 ABCC13P|C21orf73|PRED6 ATP binding cassette subfamily C member 13 (pseudogene) pseudo 276.25-13 chr8 55254091 55254897 + 0.5 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 152466 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 166.25-20 chr12 41165310 41165684 + 0.5 NA Intergenic Intergenic -22823 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 188.5-58 chr6 23469004 23469425 + 0.5 NA Intergenic Intergenic -657001 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 176.5-9 chr10 124475757 124476422 + 0.5 NA intron (NM_001318332, intron 1 of 5) intron (NM_001318332, intron 1 of 5) 14266 NM_001167880 64077 Hs.527748 NM_022126 ENSG00000107902 LHPP HDHD2B phospholysine phosphohistidine inorganic pyrophosphate phosphatase protein-coding 186-42 chr6 27003596 27004161 + 0.5 NA intron (NR_026775, intron 2 of 2) AluSz6|SINE|Alu 16428 NR_026776 100270746 Hs.590428 NR_026776 LOC100270746 - uncharacterized LOC100270746 ncRNA 172.5-32 chr18 3282290 3282733 + 0.5 NA Intergenic AluSx1|SINE|Alu 19792 NM_001144945 103910 Hs.190086 NM_033546 ENSG00000118680 MYL12B MLC-B|MRLC2 myosin light chain 12B protein-coding 204.75-43 chr5 9130134 9130637 + 0.5 NA intron (NM_003966, intron 13 of 22) intron (NM_003966, intron 13 of 22) -76490 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 186.25-55 chr6 136479034 136479588 + 0.5 NA intron (NM_001198617, intron 1 of 15) L1MA3|LINE|L1 -12436 NM_001198615 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 145.75-32 chr14 53741568 53741955 + 0.5 NA Intergenic MER121|DNA|hAT? 206723 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 245.5-3 chr1 118538687 118539425 + 0.5 NA Intergenic Intergenic -353828 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 189.75-4 chr1 77876909 77877583 + 0.5 NA 3' UTR (NM_001270384, exon 16 of 16) 3' UTR (NM_001270384, exon 16 of 16) -11269 NM_001172309 91624 Hs.612385 NM_144573 ENSG00000162614 NEXN CMH20|NELIN nexilin F-actin binding protein protein-coding 202.25-11 chr11 45834535 45834990 + 0.5 NA Intergenic Intergenic -12356 NM_001127457 1408 Hs.532491 NM_021117 ENSG00000121671 CRY2 HCRY2|PHLL2 cryptochrome circadian regulator 2 protein-coding 151.75-63 chr3 105377928 105378439 + 0.5 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 11274 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 174.25 chr1 10052884 10053563 + 0.5 NA intron (NM_006048, intron 1 of 26) AluY|SINE|Alu 20265 NM_001105562 10277 Hs.593974 NM_006048 ENSG00000130939 UBE4B E4|HDNB1|UBOX3|UFD2|UFD2A ubiquitination factor E4B protein-coding 180.5-55 chr4 174039867 174040480 + 0.5 NA Intergenic MIRb|SINE|MIR 142900 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 183.75-23 chr12 40497256 40497851 + 0.5 NA intron (NM_173600, intron 59 of 173) intron (NM_173600, intron 59 of 173) 104159 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 169.75-14 chr10 62455577 62456083 + 0.5 NA intron (NM_199451, intron 3 of 7) MIR|SINE|MIR -64618 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 202.25-50 chr6 141625162 141625603 + 0.5 NA Intergenic L1PA16|LINE|L1 463417 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 187-55 chr7 28793892 28794514 + 0.5 NA intron (NM_001011666, intron 3 of 6) intron (NM_001011666, intron 3 of 6) 108070 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 166.25-8 chr10 27887447 27888096 + 0.5 NA intron (NM_001290021, intron 10 of 13) L1M4|LINE|L1 94100 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 171-23 chr16 4989117 4989619 + 0.5 NA intron (NM_014692, intron 4 of 15) AluSz|SINE|Alu 31038 NM_014692 9717 Hs.512856 NM_014692 ENSG00000103184 SEC14L5 PRELID4B SEC14 like lipid binding 5 protein-coding 175-40 chr5 86452662 86453084 + 0.5 NA Intergenic Intergenic -165068 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 166.5-14 chr13 65895934 65896318 + 0.5 NA Intergenic Intergenic 30079 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 186.5-9 chr10 37521997 37522506 + 0.5 NA Intergenic Intergenic 80680 NM_001190489 100288485 Hs.727092 NM_001190489 ENSG00000256892 MTRNR2L7 HN7 MT-RNR2 like 7 protein-coding 185.25-71 chr6 49423626 49424144 + 0.5 NA Intergenic Intergenic 39368 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 153-28 chr17 569003 569345 + 0.5 NA intron (NM_001366254, intron 14 of 19).2 L1MC4|LINE|L1 -123234 NM_182705 359845 Hs.345588 NM_182705 ENSG00000183688 RFLNB CFM1|FAM101B refilin B protein-coding 177-10 chr11 15058914 15059574 + 0.5 NA Intergenic Intergenic -14349 NM_000728 797 Hs.534305 NM_000728 ENSG00000175868 CALCB CALC2|CGRP-II|CGRP2 calcitonin related polypeptide beta protein-coding 151.75-48 chr2 120629200 120629789 + 0.5 NA Intergenic Intergenic -106374 NM_001371271 185-64 chr6 74893135 74893716 + 0.5 NA Intergenic Intergenic 235357 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 179.75-9 chr11 66806849 66807393 + 0.5 NA intron (NM_024650, intron 9 of 16) L2a|LINE|L2 -36320 NM_005133 9986 Hs.654972 NM_005133 ENSG00000173653 RCE1 FACE2|RCE1A|RCE1B Ras converting CAAX endopeptidase 1 protein-coding 154-28 chr13 112526361 112526939 + 0.5 NA intron (NM_006322, intron 13 of 21) (ATC)n|Simple_repeat|Simple_repeat 61503 NM_001286278 10426 Hs.224152 NM_006322 ENSG00000126216 TUBGCP3 104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p tubulin gamma complex associated protein 3 protein-coding 183.75-91 chr8 88614987 88615392 + 0.5 NA Intergenic L1M5|LINE|L1 -287706 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 217.5-18 chr15 69177723 69178516 + 0.5 NA intron (NM_001324093, intron 2 of 5) L1ME1|LINE|L1 17484 NM_001324092 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 162.25-40 chr2 196199668 196200141 + 0.5 NA 3' UTR (NM_001304840, exon 27 of 27) 3' UTR (NM_001304840, exon 27 of 27) -28326 NM_004226 9262 Hs.88297 NM_004226 ENSG00000081320 STK17B DRAK2 serine/threonine kinase 17b protein-coding 146.75-76 chr3 155613201 155613667 + 0.5 NA intron (NM_001349252, intron 2 of 24) L1PB1|LINE|L1 62909 NM_001130961 23007 Hs.567423 NM_014996 ENSG00000114805 PLCH1 PLCL3 phospholipase C eta 1 protein-coding 150.5-85 chr4 90555472 90555818 + 0.5 NA intron (NM_207491, intron 5 of 7) intron (NM_207491, intron 5 of 7) 320614 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 153.75-56 chr4 60272230 60272700 + 0.5 NA Intergenic Intergenic -650154 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 217-20 chr3 188654246 188655064 + 0.5 NA intron (NM_005578, intron 6 of 10) intron (NM_005578, intron 6 of 10) -34126 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 208.75-21 chr3 13740061 13740514 + 0.5 NA intron (NR_027103, intron 5 of 5) L1M4a2|LINE|L1 89566 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 146-15 chr12 28915114 28915624 + 0.5 NA Intergenic L1PA16|LINE|L1 -233909 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 191.5-53 chr6 112360125 112360581 + 0.5 NA Intergenic Intergenic 13023 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 165.5-102 chr9 82644978 82645509 + 0.5 NA Intergenic Intergenic 417899 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 167.75-38 chr16 10280635 10281102 + 0.5 NA Intergenic AluSq|SINE|Alu -97960 NM_000833 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 175.25-74 chr9 70439728 70440403 + 0.5 NA Intergenic Intergenic -25408 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 161.25-20 chr13 42845110 42845654 + 0.5 NA intron (NR_126389, intron 3 of 4) L1M5|LINE|L1 27362 NR_126389 104355147 Hs.633967 NR_126388 LINC00428 - long intergenic non-protein coding RNA 428 ncRNA 183-48 chr7 48876578 48877065 + 0.5 NA Intergenic Intergenic -47726 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 195.5-48 chr4 31914373 31914897 + 0.5 NA Intergenic Intergenic -82744 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 154.75-19 chr13 32801787 32802133 + 0.5 NA Intergenic L1ME3F|LINE|L1 109692 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 184-17 chr15 63758519 63759071 + 0.5 NA intron (NM_003922, intron 3 of 77) intron (NM_003922, intron 3 of 77) 75153 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 179.75-26 chr2 107522878 107523343 + 0.5 NA Intergenic L1ME1|LINE|L1 -6309 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 223-21 chr8 32682412 32683034 + 0.5 NA intron (NM_001322205, intron 1 of 8) intron (NM_001322205, intron 1 of 8) 35634 NM_001322206 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 152.25-5 chr1 58199441 58200027 + 0.5 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 50769 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 187.25-6 chr1 228909393 228909922 + 0.5 NA Intergenic Intergenic 174178 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 192.25-36 chr2 89834394 89834848 + 0.5 NA Intergenic Intergenic -196714 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 150-54 chr22 40932747 40933169 + 0.5 NA TTS (NM_022098) TTS (NM_022098) -18420 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 163.5-103 chr6 157209301 157209743 + 0.5 NA 3' UTR (NM_001346813, exon 20 of 20) 3' UTR (NM_001346813, exon 20 of 20) 114737 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 174.75-33 chr2 75654055 75654626 + 0.5 NA intron (NM_014763, intron 4 of 5) intron (NM_014763, intron 4 of 5) 7557 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 168-62 chr6 120944217 120944662 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 390041 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 146.5-46 chr2 25108017 25108597 + 0.5 NA intron (NM_014971, intron 4 of 22) intron (NM_014971, intron 4 of 22) 60273 NM_000939 5443 Hs.1897 NM_000939 ENSG00000115138 POMC ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC proopiomelanocortin protein-coding 146-20 chr14 60296033 60296563 + 0.5 NA 3' UTR (NM_177952, exon 6 of 6) 3' UTR (NM_177952, exon 6 of 6) -26898 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 204.75-58 chr8 121903495 121904208 + 0.5 NA Intergenic Intergenic -262411 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 156-59 chr3 179403128 179403627 + 0.5 NA intron (NM_021629, intron 9 of 9) intron (NM_021629, intron 9 of 9) 48093 NM_021629 59345 Hs.173030 NM_021629 ENSG00000114450 GNB4 CMTD1F G protein subunit beta 4 protein-coding 149.5-18 chr12 82007626 82008010 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 54099 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 202.5-65 chr8 126858202 126858811 + 0.5 NA Intergenic Intergenic -154648 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 175.25-12 chr11 103175699 103176278 + 0.5 NA intron (NM_001377, intron 36 of 88) intron (NM_001377, intron 36 of 88) 66562 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 158-22 chr14 74181662 74181992 + 0.5 NA intron (NM_001024674, intron 5 of 5) intron (NM_001024674, intron 5 of 5) -57622 NM_182894 338917 Hs.449771 NM_182894 ENSG00000119614 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 192-52 chr7 90060589 90061141 + 0.5 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) -58535 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 150-37 chr2 58775819 58776369 + 0.5 NA intron (NR_033873, intron 2 of 13) L1M7|LINE|L1 255341 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 196.75-44 chr5 123033032 123033814 + 0.5 NA intron (NM_000943, intron 1 of 4) MSTB1|LTR|ERVL-MaLR 3302 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 209-44 chr7 79385942 79386705 + 0.5 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -66634 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 162-73 chr7 80418207 80418821 + 0.5 NA Intergenic Intergenic -44075 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 202.25-40 chr3 95695087 95695746 + 0.5 NA Intergenic L1PA13|LINE|L1 -12223 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 147.75-113 chr8 115126138 115126581 + 0.5 NA Intergenic Intergenic 541654 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 151.75-99 chr7 34649609 34650106 + 0.5 NA intron (NR_033664, intron 2 of 4) intron (NR_033664, intron 2 of 4) -8361 NM_207172 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 164.5-19 chr14 58644556 58645057 + 0.5 NA intron (NM_001079520, intron 3 of 3) intron (NM_001079520, intron 3 of 3) 5969 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 176.25-17 chr12 61343663 61344237 + 0.5 NA Intergenic Intergenic 848889 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 176.5-68 chr5 148250064 148250485 + 0.5 NA Intergenic Intergenic 11749 NM_001363511 105378220 Hs.534838 NM_001363511 ENSG00000248109 MARCOL - MARCO like protein-coding 160.5-99 chr5 161980388 161980830 + 0.5 NA intron (NR_126372, intron 1 of 2) intron (NR_126372, intron 1 of 2) 20587 NR_126372 104326188 NR_126372 LINC01202 - long intergenic non-protein coding RNA 1202 ncRNA 160.25-73 chr7 107087137 107087657 + 0.5 NA intron (NM_002736, intron 2 of 10) intron (NM_002736, intron 2 of 10) 42692 NM_002736 5577 Hs.433068 NM_002736 ENSG00000005249 PRKAR2B PRKAR2|RII-BETA protein kinase cAMP-dependent type II regulatory subunit beta protein-coding 208.25-35 chr8 108711013 108711844 + 0.5 NA intron (NR_136411, intron 1 of 3) intron (NR_136411, intron 1 of 3) 76166 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 254.25-18 chr9 34699132 34699752 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL -8166 NM_006274 6363 Hs.50002 NM_006274 ENSG00000172724 CCL19 CKb11|ELC|MIP-3b|MIP3B|SCYA19 C-C motif chemokine ligand 19 protein-coding 195-16 chr13 90061206 90061875 + 0.5 NA intron (NR_047489, intron 5 of 5) intron (NR_047489, intron 5 of 5) 58177 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 160.5-67 chr3 183819637 183820207 + 0.5 NA intron (NM_024871, intron 1 of 2) intron (NM_024871, intron 1 of 2) 5655 NM_024871 79929 Hs.478465 NM_024871 ENSG00000180834 MAP6D1 MAPO6D1|SL21 MAP6 domain containing 1 protein-coding 159.5-67 chr4 83215678 83216229 + 0.5 NA Intergenic L1MB3|LINE|L1 68842 NM_001358921 27235 Hs.144304 NM_015697 ENSG00000173085 COQ2 CL640|COQ10D1|MSA1|PHB:PPT coenzyme Q2, polyprenyltransferase protein-coding 151-103 chr8 113740687 113741273 + 0.5 NA Intergenic Intergenic -304041 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 168.5-88 chr6 101381025 101381419 + 0.5 NA Intergenic Intergenic -17763 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 162.75-62 chr5 84118570 84119055 + 0.5 NA intron (NM_001278642, intron 4 of 9) MER5B|DNA|hAT-Charlie 266055 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 169-66 chr7 104975142 104975636 + 0.5 NA Intergenic AluSc|SINE|Alu 15776 NR_039981 100216546 Hs.369356 NR_039981 LINC01004 - long intergenic non-protein coding RNA 1004 ncRNA 173.25-25 chr14 78431416 78431899 + 0.5 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 27938 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 173.25-73 chr8 29856990 29857503 + 0.5 NA Intergenic Intergenic -28742 NR_125817 101929470 Hs.204721 NR_125817 ENSG00000248964 LOC101929470 - uncharacterized LOC101929470 ncRNA 158.5-38 chr18 80199107 80199528 + 0.5 NA intron (NM_032510, intron 2 of 2) L1MB7|LINE|L1 48197 NM_032510 84552 Hs.654920 NM_032510 ENSG00000178184 PARD6G PAR-6G|PAR6gamma par-6 family cell polarity regulator gamma protein-coding 191.25-3 chr1 85581718 85582286 + 0.5 NA exon (NM_001554, exon 3 of 5) exon (NM_001554, exon 3 of 5) 1241 NM_001554 3491 Hs.8867 NM_001554 ENSG00000142871 CCN1 CYR61|GIG1|IGFBP10 cellular communication network factor 1 protein-coding 170-5 chr1 150680124 150680699 + 0.5 NA intron (NM_018178, intron 2 of 4) intron (NM_018178, intron 2 of 4) 16743 NM_018178 55204 Hs.203699 NM_018178 ENSG00000143457 GOLPH3L GPP34R golgi phosphoprotein 3 like protein-coding 213.75-43 chr8 130472311 130472839 + 0.5 NA Intergenic L1MA3|LINE|L1 -28901 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 146.5-63 chr2 237279498 237279912 + 0.5 NA Intergenic Intergenic 134459 NM_057164 1293 Hs.233240 NM_004369 ENSG00000163359 COL6A3 BTHLM1|DYT27|UCMD1 collagen type VI alpha 3 chain protein-coding 179.75-59 chr7 3448568 3449023 + 0.5 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 147543 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 213-14 chr2 138044646 138045262 + 0.5 NA Intergenic AluSg4|SINE|Alu -56930 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 148.75-87 chr6 50719039 50719574 + 0.5 NA intron (NM_172238, intron 3 of 7) intron (NM_172238, intron 3 of 7) 5762 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 157-41 chr17 65841091 65841572 + 0.5 NA intron (NM_001353129, intron 21 of 26) L1MA4|LINE|L1 -14788 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 173.5-90 chr8 112245379 112245967 + 0.5 NA intron (NM_001363185, intron 60 of 66) AluSx1|SINE|Alu -397820 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 182.5-56 chr5 107112387 107112877 + 0.5 NA Intergenic Intergenic -101618 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 150.5-129 chrX 56658665 56659173 + 0.5 NA Intergenic L1P3|LINE|L1 -70324 NM_001348129 550643 Hs.355559 NM_001348129 ENSG00000204272 NBDY LINC01420|NoBody negative regulator of P-body association protein-coding 170.25-6 chr10 121456399 121456848 + 0.5 NA Intergenic MSTC|LTR|ERVL-MaLR 74691 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 171.5-93 chr7 39898968 39899541 + 0.5 NA Intergenic Intergenic 50165 NR_158201 112267983 Hs.587424 NR_158201 LOC112267983 - uncharacterized LOC112267983 ncRNA 175.25-38 chr2 194531421 194532013 + 0.5 NA Intergenic Intergenic 187448 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 172-9 chr1 224857599 224858226 + 0.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -71742 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 188.5-9 chr10 99027840 99028414 + 0.5 NA intron (NM_021828, intron 3 of 11) L1MA1|LINE|L1 -103559 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 164.5-3 chr1 155204447 155205004 + 0.5 NA intron (NM_001252608, intron 2 of 20) intron (NM_001252608, intron 2 of 20) 3172 NR_045553 7059 Hs.169875 NM_007112 ENSG00000169231 THBS3 TSP3 thrombospondin 3 protein-coding 168.75-31 chr17 76330019 76330500 + 0.5 NA intron (NM_001366236, intron 5 of 9) intron (NM_001366236, intron 5 of 9) -22579 NM_032134 84074 Hs.252739 NM_032134 ENSG00000129646 QRICH2 SPGF35 glutamine rich 2 protein-coding 210.5-56 chrX 147954389 147955124 + 0.5 NA Intergenic Intergenic -26581 NM_152578 158521 Hs.128580 NM_152578 ENSG00000176988 FMR1NB CT37|NY-SAR-35|NYSAR35 FMR1 neighbor protein-coding 147.75-3 chr1 62846504 62846911 + 0.5 NA intron (NM_178221, intron 10 of 10) L2a|LINE|L2 62575 NM_032852 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 179.75-11 chr12 2568564 2569276 + 0.5 NA intron (NM_199460, intron 13 of 49).2 L1MB3|LINE|L1 103300 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 171.5-38 chr18 34479282 34479884 + 0.5 NA Intergenic Intergenic -13707 NM_032975 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 183.5-70 chr8 38261145 38261672 + 0.5 NA non-coding (NR_156416, exon 17 of 17) non-coding (NR_156416, exon 17 of 17) 7812 NM_032483 84513 Hs.567619 NM_032483 ENSG00000147535 PLPP5 DPPL1|HTPAP|PPAPDC1B phospholipid phosphatase 5 protein-coding 218.5-37 chr6 140926118 140926651 + 0.5 NA Intergenic Intergenic 242570 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 165.75-35 chr15 58601503 58602148 + 0.5 NA intron (NM_001320570, intron 13 of 14) L1MC4|LINE|L1 91782 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 163.5-84 chr4 97082572 97082940 + 0.5 NA Intergenic L1PA16|LINE|L1 -284170 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 233.75-26 chr5 108128411 108129125 + 0.5 NA intron (NM_001163315, intron 6 of 8) intron (NM_001163315, intron 6 of 8) 253330 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 155.5-112 chr9 9967163 9967623 + 0.5 NA intron (NM_002839, intron 4 of 45) intron (NM_002839, intron 4 of 45) 168001 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 153.5-33 chr15 34204913 34205357 + 0.5 NA intron (NM_024713, intron 1 of 9) AluSc|SINE|Alu 4961 NM_024713 79768 Hs.633566 NM_024713 ENSG00000134152 KATNBL1 C15orf29 katanin regulatory subunit B1 like 1 protein-coding 172.5-49 chr3 131692995 131693509 + 0.5 NA intron (NM_130808, intron 5 of 15) Charlie1b|DNA|hAT-Charlie -190281 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 167.75-29 chr14 84881724 84882272 + 0.5 NA Intergenic Intergenic -389934 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 159-84 chr8 121298184 121298741 + 0.5 NA Intergenic Intergenic -340884 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 177.25-66 chr6 130411261 130411886 + 0.5 NA intron (NM_001258277, intron 2 of 2) L1MC4|LINE|L1 -9523 NM_001258278 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 146.25-66 chr3 156470900 156471371 + 0.5 NA intron (NM_001308222, intron 7 of 12) intron (NM_001308222, intron 7 of 12) -24199 NR_046618 100874084 Hs.131282 NR_046618 ENSG00000242370 KCNAB1-AS1 - KCNAB1 antisense RNA 1 ncRNA 266.5-16 chr5 20947542 20948318 + 0.5 NA Intergenic L1MC1|LINE|L1 -332395 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 155-69 chr4 39130746 39131334 + 0.5 NA Intergenic AluJb|SINE|Alu -51489 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 181-32 chr4 14324045 14324544 + 0.5 NA Intergenic Intergenic 212326 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 181.5-57 chr5 98500515 98501100 + 0.5 NA Intergenic Intergenic -267825 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 157-48 chr2 70389975 70390323 + 0.5 NA Intergenic MIRb|SINE|MIR -88082 NM_001329752 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 155-56 chr3 70982550 70983130 + 0.5 NA intron (NR_146142, intron 13 of 19) intron (NR_146142, intron 13 of 19) 82084 NM_001244813 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 195-28 chr2 152215740 152216357 + 0.5 NA Intergenic L1MEg|LINE|L1 -40285 NM_005843 10254 Hs.17200 NM_005843 ENSG00000115145 STAM2 Hbp|STAM2A|STAM2B signal transducing adaptor molecule 2 protein-coding 186.5-59 chr5 62365199 62365873 + 0.5 NA intron (NM_001098511, intron 15 of 20) L1MEb|LINE|L1 38369 NM_001348076 27292 Hs.731665 NM_014473 ENSG00000086189 DIMT1 DIM1|DIMT1L|HSA9761|HUSSY5 DIMT1 rRNA methyltransferase and ribosome maturation factor protein-coding 151.25-25 chr14 84871288 84871627 + 0.5 NA Intergenic MLT1G1|LTR|ERVL-MaLR -400475 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 215.25-30 chr4 44556825 44557476 + 0.5 NA Intergenic Intergenic 94491 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 182.75-70 chr8 35151395 35151844 + 0.5 NA Intergenic Intergenic -83856 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 178-7 chr10 65447073 65447482 + 0.5 NA Intergenic Intergenic -124148 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 148.75-66 chr3 179852479 179852953 + 0.5 NA intron (NM_001349408, intron 8 of 14) intron (NM_001349408, intron 8 of 14) -45478 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 147.5-2 chr1 96743957 96744478 + 0.5 NA intron (NM_001300990, intron 2 of 12) AluSx4|SINE|Alu 21579 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 164.75-35 chr18 71876967 71877515 + 0.5 NA Intergenic Intergenic -95015 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 232-24 chr7 45631159 45632058 + 0.5 NA intron (NM_001281768, intron 5 of 9) intron (NM_001281768, intron 5 of 9) 57240 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 153.75-19 chr15 54637448 54638036 + 0.5 NA Intergenic L1MA8|LINE|L1 -419005 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 186.75-28 chr14 48339340 48339876 + 0.5 NA Intergenic L1PA13|LINE|L1 -544594 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 157.5-19 chr12 62451722 62452341 + 0.5 NA Intergenic Intergenic -14795 NM_001278470 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 187.5-30 chr2 50935838 50936436 + 0.5 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 95995 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 151.25-96 chr8 122734141 122734531 + 0.5 NA Intergenic Intergenic -40230 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 218.25-26 chr4 66336424 66336992 + 0.5 NA Intergenic L1PA17|LINE|L1 59884 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 166.75-37 chr2 22993988 22994451 + 0.5 NA Intergenic L2a|LINE|L2 -390960 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 152.5-23 chr14 22452419 22452901 + 0.5 NA intron (NR_148361, intron 2 of 4) intron (NR_148361, intron 2 of 4) -19907 NR_148363 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 177-37 chr22 25618975 25619513 + 0.5 NA intron (NM_001362778, intron 2 of 19) intron (NM_001362778, intron 2 of 19) 54569 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 147.25-75 chr5 117429930 117430425 + 0.5 NA intron (NR_046089, intron 1 of 5) L1MB7|LINE|L1 14665 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 171.5-55 chr21 15755237 15755764 + 0.5 NA intron (NM_001352560, intron 1 of 23) intron (NM_001352560, intron 1 of 23) 25518 NM_001283042 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 152.5-11 chr10 55967290 55967732 + 0.5 NA Intergenic Intergenic -339569 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 162-52 chr4 33801917 33802304 + 0.5 NA Intergenic Intergenic 237783 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 146.25-20 chr12 41593785 41594188 + 0.5 NA Intergenic L1M5|LINE|L1 156247 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 153.25-10 chr1 78914463 78915061 + 0.5 NA intron (NM_022159, intron 12 of 14) intron (NM_022159, intron 12 of 14) 91968 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 176.25-49 chr4 63716845 63717485 + 0.5 NA Intergenic Intergenic 692285 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 149-13 chr12 9787351 9787870 + 0.5 NA Intergenic MER4CL34|LTR|ERV1 -12442 NR_159359 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 192.5-13 chr14 43103195 43103652 + 0.5 NA Intergenic L1PA15-16|LINE|L1 1403860 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 210.5-53 chr9 78440835 78441403 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR 143994 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 179.75-35 chr3 74535646 74536303 + 0.5 NA Intergenic Intergenic -14834 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 193.5-14 chr12 31961707 31962439 + 0.5 NA intron (NM_018169, intron 2 of 5) AluSz6|SINE|Alu 2658 NM_018169 55196 Hs.445129 NM_018169 ENSG00000174718 RESF1 C12orf35|GET|KIAA1551|UTA2-1 retroelement silencing factor 1 protein-coding 210.5-10 chr12 40478286 40479037 + 0.5 NA intron (NM_173600, intron 55 of 173) MIR|SINE|MIR 85267 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 175.75-47 chr3 114522158 114522670 + 0.5 NA intron (NR_121662, intron 3 of 6) L2a|LINE|L2 68821 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 157.5-71 chr5 3568462 3568809 + 0.5 NA Intergenic L1ME4a|LINE|L1 -27197 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 166.75-57 chr3 119931814 119932335 + 0.5 NA intron (NM_002093, intron 3 of 11) intron (NM_002093, intron 3 of 11) 149364 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 151.5-92 chr7 137242825 137243246 + 0.5 NA intron (NM_001321386, intron 4 of 4) AluSc|SINE|Alu 25820 NM_001321386 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 146.25-19 chr12 37407201 37407629 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -909359 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 146.75-6 chr1 181333078 181333529 + 0.5 NA Intergenic Intergenic 96915 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 195.75-38 chr2 180482629 180483292 + 0.5 NA Intergenic Intergenic -209144 NR_104324 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 205.25-33 chr5 173029704 173030241 + 0.5 NA intron (NM_003945, intron 3 of 3) intron (NM_003945, intron 3 of 3) 9246 NR_002988 677841 Hs.692720 NR_002988 ENSG00000212402 SNORA74B U19-2 small nucleolar RNA, H/ACA box 74B snoRNA 171.5-78 chr5 12924828 12925377 + 0.5 NA intron (NR_147005, intron 2 of 4) intron (NR_147005, intron 2 of 4) 107784 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 187.75-65 chr6 123516355 123517080 + 0.5 NA intron (NM_001256020, intron 5 of 8) intron (NM_001256020, intron 5 of 8) 77113 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 195-40 chr6 2143664 2144115 + 0.5 NA intron (NM_001500, intron 1 of 10) intron (NM_001500, intron 1 of 10) 32102 NM_001253846 2762 Hs.144496 NM_001500 ENSG00000112699 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 146-4 chr1 158498964 158499359 + 0.5 NA Intergenic L1ME3A|LINE|L1 19283 NM_001004472 343406 Hs.451913 NM_001004472 ENSG00000198965 OR10R2 OR1-8|OR10R2Q olfactory receptor family 10 subfamily R member 2 protein-coding 152.25-29 chr15 62498675 62499128 + 0.5 NA Intergenic Intergenic 146280 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 193.5-62 chr5 106776789 106777396 + 0.5 NA Intergenic Intergenic 233922 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 184-6 chr1 209337050 209337584 + 0.5 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 11861 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 182.75-20 chr13 101738859 101739407 + 0.5 NA intron (NM_175929, intron 3 of 4) intron (NM_175929, intron 3 of 4) 177512 NM_004115 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 241.25-22 chr5 62091635 62092478 + 0.5 NA Intergenic HAL1|LINE|L1 -214106 NM_004520 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 148-49 chr2 49327573 49327924 + 0.5 NA Intergenic L1MB4|LINE|L1 -173221 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 154.75-66 chr3 179966410 179966795 + 0.5 NA intron (NM_001349396, intron 1 of 13) intron (NM_001349396, intron 1 of 13) 7623 NM_001349387 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 178.25-45 chr4 58684585 58685089 + 0.5 NA Intergenic L1ME4b|LINE|L1 -148509 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 214-11 chr14 85455426 85456076 + 0.5 NA Intergenic Intergenic 61836 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 153.5-68 chr3 197095670 197096194 + 0.5 NA intron (NM_001366216, intron 13 of 23) L1MC4|LINE|L1 -66115 NM_005929 4241 Hs.184727 NM_005929 ENSG00000163975 MELTF CD228|MAP97|MFI2|MTF1|MTf melanotransferrin protein-coding 156.25-59 chr3 164481798 164482298 + 0.5 NA Intergenic Intergenic -310492 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 163.5-40 chr16 48271676 48272221 + 0.5 NA intron (NM_031490, intron 7 of 14) intron (NM_031490, intron 7 of 14) -24409 NM_001370497 85320 Hs.652267 NM_032583 ENSG00000121270 ABCC11 EWWD|MRP8|WW ATP binding cassette subfamily C member 11 protein-coding 214.75-19 chr12 75739319 75740037 + 0.5 NA Intergenic Intergenic -228069 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 194.25-50 chr8 110476290 110476768 + 0.5 NA Intergenic L1MB3|LINE|L1 -500758 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 241.5-32 chr8 99142008 99142598 + 0.5 NA intron (NM_017890, intron 12 of 61) intron (NM_017890, intron 12 of 61) 129037 NM_015243 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 180.5-50 chr3 142464057 142464543 + 0.5 NA intron (NM_001354579, intron 40 of 45) AluJr|SINE|Alu -16238 NM_001282859 54464 Hs.435103 NM_019001 ENSG00000114127 XRN1 SEP1 5'-3' exoribonuclease 1 protein-coding 151-75 chr5 105056637 105057045 + 0.5 NA Intergenic MER52A|LTR|ERV1 -42633 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 173.75-49 chr4 63286716 63287101 + 0.5 NA Intergenic L1MA9|LINE|L1 1122542 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 148.5-79 chr5 42155049 42155540 + 0.5 NA TTS (NR_104635) TTS (NR_104635) 20051 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 219.5-15 chr2 68374420 68374963 + 0.5 NA intron (NM_002664, intron 1 of 8) L1ME3|LINE|L1 9409 NM_002664 5341 Hs.468840 NM_002664 ENSG00000115956 PLEK P47 pleckstrin protein-coding 230.25-14 chr16 65488113 65488768 + 0.5 NA intron (NR_027755, intron 2 of 8) MIRc|SINE|MIR 87860 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 173.75-47 chr3 194437458 194437834 + 0.5 NA intron (NM_001367549, intron 17 of 33) intron (NM_001367549, intron 17 of 33) 30593 NM_024524 79572 Hs.529609 NM_024524 ENSG00000133657 ATP13A3 AFURS1 ATPase 13A3 protein-coding 151.75-96 chr7 11827473 11827932 + 0.5 NA intron (NM_015204, intron 1 of 26) L2c|LINE|L2 4496 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 164.25-74 chr5 145582660 145583138 + 0.5 NA Intergenic L1PA11|LINE|L1 252443 NM_138492 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 171.75-34 chr17 55597756 55598252 + 0.5 NA Intergenic L1MB2|LINE|L1 124860 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 161-2 chr1 40188102 40188478 + 0.5 NA intron (NM_012421, intron 1 of 7) intron (NM_012421, intron 1 of 7) 26903 NM_012421 6018 Hs.205627 NM_012421 ENSG00000117000 RLF ZN-15L|ZNF292L rearranged L-myc fusion protein-coding 200.25-52 chr8 105350312 105350796 + 0.5 NA intron (NM_001362837, intron 1 of 7) intron (NM_001362837, intron 1 of 7) 31011 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 181.75-32 chr2 116207300 116208007 + 0.5 NA Intergenic Intergenic 863838 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 147.25-87 chr6 104026809 104027244 + 0.5 NA Intergenic Intergenic 832520 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 166-45 chr20 34812950 34813553 + 0.5 NA intron (NM_001318240, intron 1 of 15) AluSx1|SINE|Alu 8388 NM_001318240 23054 Hs.368971 NM_014071 ENSG00000198646 NCOA6 AIB3|ASC2|NRC|PRIP|RAP250|TRBP nuclear receptor coactivator 6 protein-coding 172-81 chr7 57136860 57137520 + 0.5 NA intron (NM_033273, intron 1 of 4) AluSx1|SINE|Alu 2674 NM_033273 90827 Hs.616660 NM_033273 ENSG00000185177 ZNF479 HKr19|KR19 zinc finger protein 479 protein-coding 147.5-93 chr7 31838169 31838734 + 0.5 NA intron (NM_001191059, intron 10 of 18) L1MC2|LINE|L1 151236 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 183.5-54 chr4 86645342 86645762 + 0.5 NA intron (NM_080685, intron 2 of 47) L1ME1|LINE|L1 51237 NM_080685 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 151.5-106 chr9 23978124 23978533 + 0.5 NA Intergenic Intergenic -127727 NM_001351460 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 147.5-7 chr1 217551403 217551805 + 0.5 NA intron (NM_018040, intron 5 of 9) intron (NM_018040, intron 5 of 9) 79486 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 157-32 chr14 48702954 48703390 + 0.5 NA Intergenic Intergenic 883208 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 150-69 chr4 74480357 74480781 + 0.5 NA Intergenic Intergenic 35433 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 170-42 chr3 180432818 180433183 + 0.5 NA Intergenic Intergenic 18827 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 152.75-101 chr8 103853932 103854280 + 0.5 NA intron (NR_145711, intron 1 of 21) L1PA16|LINE|L1 34886 NM_001348509 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 246.75-6 chr16 87958530 87959263 + 0.5 NA promoter-TSS (NM_001173542) promoter-TSS (NM_001173542) -975 NM_001173542 54971 Hs.461705 NM_017869 ENSG00000172530 BANP BEND1|SMAR1|SMARBP1 BTG3 associated nuclear protein protein-coding 234.5-22 chr6 102323804 102324730 + 0.5 NA Intergenic L1M6|LINE|L1 925282 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 163.5-115 chr8 86597750 86598377 + 0.5 NA intron (NM_019098, intron 15 of 17) L2a|LINE|L2 83628 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 152-9 chr10 81535067 81535428 + 0.5 NA Intergenic Intergenic -339947 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 157-95 chr8 88700398 88700993 + 0.5 NA Intergenic AluSx|SINE|Alu -373212 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 181.75-50 chr4 101116859 101117363 + 0.5 NA intron (NM_001130691, intron 2 of 12) intron (NM_001130691, intron 2 of 12) 123761 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 168.5-107 chrX 98887743 98888355 + 0.5 NA Intergenic Intergenic -1323514 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 188.5-56 chr5 167048722 167049200 + 0.5 NA Intergenic Intergenic -24281 NM_001122679 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 233.75-23 chr4 115847870 115848657 + 0.5 NA Intergenic Intergenic -451462 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 146.5-42 chr17 72391320 72391793 + 0.5 NA Intergenic MIR|SINE|MIR 48745 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 152.25-37 chr2 6487527 6487995 + 0.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -112339 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 147-37 chr18 60752268 60752613 + 0.5 NA Intergenic L1M5|LINE|L1 -379665 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 176.25-7 chr10 63607183 63607769 + 0.5 NA intron (NM_001001330, intron 5 of 7) intron (NM_001001330, intron 5 of 7) -85586 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 182-23 chr16 63768993 63769464 + 0.5 NA Intergenic Intergenic 1352835 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 161-65 chr4 127244516 127244869 + 0.5 NA Intergenic L1MA4|LINE|L1 -388265 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 211.25-33 chr5 21041591 21042366 + 0.5 NA Intergenic L1MEg|LINE|L1 -417502 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 173.5-60 chr4 66930686 66931242 + 0.5 NA Intergenic Intergenic 491036 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 161-94 chr9 136420795 136421373 + 0.5 NA intron (NM_015160, intron 11 of 12) intron (NM_015160, intron 11 of 12) 10426 NM_015160 23203 Hs.495471 NM_015160 ENSG00000165688 PMPCA Alpha-MPP|CLA1|CPD3|INPP5E|P-55|SCAR2 peptidase, mitochondrial processing alpha subunit protein-coding 158.25-7 chr1 204701073 204701629 + 0.5 NA Intergenic Intergenic -15613 NM_006338 10446 Hs.26312 NM_006338 ENSG00000170382 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 163-23 chr12 22363029 22363439 + 0.5 NA Intergenic L1ME1|LINE|L1 -28520 NM_003034 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 156-18 chr12 85336548 85336990 + 0.5 NA Intergenic AluY|SINE|Alu 56549 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 151.75-112 chr9 3448652 3449052 + 0.5 NA intron (NM_001282116, intron 1 of 16) intron (NM_001282116, intron 1 of 16) 40635 NM_001282117 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 228.75-10 chr2 12302317 12303072 + 0.5 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) 103564 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 146.5-54 chr2 97846218 97846566 + 0.5 NA intron (NM_015348, intron 5 of 40) L1MC3|LINE|L1 111986 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 151.75-77 chr5 63284896 63285414 + 0.5 NA Intergenic LTR33|LTR|ERVL 677137 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 152.75-34 chr14 86776495 86777026 + 0.5 NA Intergenic Intergenic -129018 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 164.5-93 chr8 81008293 81008792 + 0.5 NA intron (NM_018440, intron 3 of 8) L4_C_Mam|LINE|RTE-X 103526 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 149.25-40 chr18 12831988 12832463 + 0.5 NA intron (NM_080423, intron 3 of 8) AluSx1|SINE|Alu 8737 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 162.25-51 chr3 95070402 95070843 + 0.5 NA Intergenic L1MB1|LINE|L1 132359 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 172.25-10 chr11 36910593 36911215 + 0.5 NA Intergenic Intergenic -312625 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 157.75-37 chr14 71984689 71985263 + 0.5 NA intron (NM_001370288, intron 2 of 16) L1ME4c|LINE|L1 51449 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 235.25-19 chr8 111807329 111807879 + 0.5 NA Intergenic Intergenic 430965 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 150.5-102 chr6 49265935 49266460 + 0.5 NA Intergenic MLT1J|LTR|ERVL-MaLR 197056 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 158-80 chr6 149900587 149901044 + 0.5 NA intron (NR_045127, intron 2 of 2) intron (NR_045127, intron 2 of 2) -4756 NM_001243328 135250 Hs.511818 NM_139165 ENSG00000164520 RAET1E LETAL|N2DL-4|NKG2DL4|RAET1E2|RL-4|ULBP4|bA350J20.7 retinoic acid early transcript 1E protein-coding 157.75-7 chr1 157523404 157524011 + 0.5 NA intron (NM_001195388, intron 10 of 16) intron (NM_001195388, intron 10 of 16) 28808 NM_001195388 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 176.25-34 chr17 56565177 56565710 + 0.5 NA Intergenic ERVL-int|LTR|ERVL -28256 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 158-69 chr5 96953845 96954273 + 0.5 NA intron (NM_005575, intron 1 of 17) intron (NM_005575, intron 1 of 17) -4374 NM_175920 4012 Hs.527199 NM_005575 ENSG00000113441 LNPEP CAP|IRAP|P-LAP|PLAP leucyl and cystinyl aminopeptidase protein-coding 153.5-92 chr6 155277481 155277995 + 0.5 NA intron (NM_016020, intron 5 of 6) intron (NM_016020, intron 5 of 6) 13725 NM_001001346 49861 Hs.567491 NM_001001346 ENSG00000171217 CLDN20 - claudin 20 protein-coding 165.5-93 chr8 46824943 46825496 + 0.5 NA Intergenic BSR/Beta|Satellite|Satellite -15667 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 175.5-6 chr10 14142403 14142910 + 0.5 NA intron (NR_134578, intron 2 of 3) MIR3|SINE|MIR 68372 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 147.25-15 chr10 66002321 66002736 + 0.5 NA intron (NM_001127384, intron 15 of 17) MLT1J2|LTR|ERVL-MaLR 431103 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 173.75-8 chr10 33575588 33576202 + 0.5 NA Intergenic AluSx1|SINE|Alu 196785 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 160-64 chr4 124162722 124163181 + 0.5 NA Intergenic L3|LINE|CR1 388687 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 158.75-25 chr14 73102639 73103167 + 0.5 NA intron (NM_021239, intron 9 of 18) intron (NM_021239, intron 9 of 18) -33604 NM_007318 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 157-84 chr6 152785539 152785906 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR 34925 NM_003381 7432 Hs.53973 NM_003381 ENSG00000146469 VIP PHM27 vasoactive intestinal peptide protein-coding 172.75-79 chrX 142305784 142306315 + 0.5 NA Intergenic Intergenic -100759 NM_016249 51438 Hs.123536 NM_016249 ENSG00000046774 MAGEC2 CT10|HCA587|MAGEE1 MAGE family member C2 protein-coding 185-20 chr14 47495767 47496319 + 0.5 NA intron (NM_001113498, intron 1 of 16) L1ME3G|LINE|L1 -152797 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 190-31 chr2 205258259 205258809 + 0.5 NA intron (NM_057177, intron 16 of 21) L2a|LINE|L2 -423966 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 148.75-100 chr8 111251624 111252014 + 0.5 NA Intergenic Intergenic -15616 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 162.25-81 chr6 62413630 62414138 + 0.5 NA Intergenic L1PREC2|LINE|L1 -127657 NM_001350622 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 184.75-71 chr6 162057238 162057957 + 0.5 NA intron (NM_004562, intron 4 of 11) intron (NM_004562, intron 4 of 11) 586620 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 153-40 chr2 159680275 159680659 + 0.5 NA Intergenic L1MEi|LINE|L1 31975 NR_110586 29994 Hs.470369 NM_013450 ENSG00000123636 BAZ2B WALp4 bromodomain adjacent to zinc finger domain 2B protein-coding 151-20 chr14 95932378 95932873 + 0.5 NA Intergenic Intergenic 55853 NR_038861 100507043 Hs.455955 NR_038861 ENSG00000250366 TUNAR HI-LNC78|LINC00617|TUNA TCL1 upstream neural differentiation-associated RNA ncRNA 185.25-37 chr19 28056758 28057337 + 0.5 NA Intergenic L1PA7|LINE|L1 -263107 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 158.5-60 chr22 24569252 24569597 + 0.5 NA intron (NM_001278656, intron 3 of 3) intron (NM_001278656, intron 3 of 3) 13425 NM_004175 6634 Hs.356549 NM_004175 ENSG00000100028 SNRPD3 SMD3|Sm-D3 small nuclear ribonucleoprotein D3 polypeptide protein-coding 165.5-62 chr4 31927664 31928154 + 0.5 NA Intergenic MER11A|LTR|ERVK -69470 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 258.5 chr1 151222162 151222838 + 0.5 NA intron (NM_001135637, intron 1 of 13) intron (NM_001135637, intron 1 of 13) 23948 NM_003557 8394 Hs.655131 NM_003557 ENSG00000143398 PIP5K1A - phosphatidylinositol-4-phosphate 5-kinase type 1 alpha protein-coding 150.75-40 chr2 161645757 161646181 + 0.5 NA intron (NM_001354451, intron 1 of 25) intron (NM_001354451, intron 1 of 25) 21553 NM_001354449 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 148-62 chr3 62870408 62870909 + 0.5 NA intron (NM_003716, intron 1 of 29) intron (NM_003716, intron 1 of 29) 4758 NM_183394 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 178-75 chrX 67867324 67867829 + 0.5 NA Intergenic L1PA17|LINE|L1 322953 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 175-2 chr1 110371941 110372431 + 0.5 NA intron (NM_001201548, intron 6 of 6) intron (NM_001201548, intron 6 of 6) 18840 NM_001319220 9122 Hs.351306 NM_004696 ENSG00000168679 SLC16A4 MCT4|MCT5 solute carrier family 16 member 4 protein-coding 179-53 chr6 72895168 72895711 + 0.5 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 72314 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 193.5-43 chr3 50296028 50296470 + 0.5 NA TTS (NM_012191) TTS (NM_012191) 2611 NM_001200029 8372 Hs.129910 NM_003549 ENSG00000186792 HYAL3 HYAL-3|LUCA-3|LUCA3 hyaluronidase 3 protein-coding 159.25-13 chr12 26035565 26035913 + 0.5 NA intron (NM_001164747, intron 2 of 5) intron (NM_001164747, intron 2 of 5) -16825 NM_001164746 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 192.5-65 chr9 78895571 78896169 + 0.5 NA Intergenic Intergenic 249796 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 185.5-36 chr2 57622885 57623604 + 0.5 NA Intergenic Intergenic -284407 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 163.75-53 chr4 117748674 117749202 + 0.5 NA Intergenic Intergenic -85463 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 152.5-12 chr10 90825286 90825823 + 0.5 NA intron (NM_019860, intron 1 of 2) L1M1|LINE|L1 32485 NM_019859 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 147.75-43 chr16 78590063 78590434 + 0.5 NA intron (NM_001291997, intron 7 of 7) MLT1A1|LTR|ERVL-MaLR 490594 NM_016373 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 156.75-19 chr10 118938971 118939442 + 0.5 NA Intergenic AluYc|SINE|Alu -90508 NM_199461 340719 Hs.591918 NM_199461 ENSG00000188613 NANOS1 EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A nanos C2HC-type zinc finger 1 protein-coding 151.5-48 chr2 48748669 48749045 + 0.5 NA intron (NM_000233, intron 1 of 10) intron (NM_000233, intron 1 of 10) 6867 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 179.5-28 chr16 58069387 58069931 + 0.5 NA Intergenic AluSq|SINE|Alu 43905 NM_002428 4324 Hs.80343 NM_002428 ENSG00000102996 MMP15 MMP-15|MT2-MMP|MT2MMP|MTMMP2|SMCP-2 matrix metallopeptidase 15 protein-coding 202.25-5 chr10 112554236 112554808 + 0.5 NA intron (NM_001365712, intron 6 of 8) L1MC3|LINE|L1 -79648 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 164.75-81 chr7 27788235 27788796 + 0.5 NA intron (NM_001362794, intron 8 of 16) L1MC5a|LINE|L1 48420 NM_001206902 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 177.75-56 chr4 126915148 126915726 + 0.5 NA Intergenic MIRc|SINE|MIR -717520 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 147.5-56 chr21 44673530 44673889 + 0.5 NA intron (NM_144991, intron 1 of 11) L1MA4A|LINE|L1 -6782 NM_181684 353323 Hs.567902 NM_181684 ENSG00000221864 KRTAP12-2 KAP12.2|KRTAP12.2 keratin associated protein 12-2 protein-coding 258.75-4 chr10 101516985 101517881 + 0.5 NA intron (NM_001256856, intron 3 of 13) AluJo|SINE|Alu 70824 NM_001174084 27343 Hs.523230 NM_013274 ENSG00000166169 POLL BETAN|POLKAPPA DNA polymerase lambda protein-coding 151.75-61 chr3 26500473 26500947 + 0.5 NA Intergenic Intergenic -122096 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 159-41 chr2 193046095 193046609 + 0.5 NA Intergenic L1M3|LINE|L1 296507 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 223.75-22 chr7 53798289 53799101 + 0.5 NA intron (NR_038371, intron 1 of 5) intron (NR_038371, intron 1 of 5) 13236 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 179.25-37 chr18 47803889 47804486 + 0.5 NA Intergenic L2a|LINE|L2 126472 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 148-31 chr14 73678624 73679179 + 0.5 NA intron (NM_001201366, intron 6 of 8) L1MC4a|LINE|L1 33915 NM_031427 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16|LC1 dynein axonemal light chain 1 protein-coding 147-18 chr11 79010062 79010508 + 0.5 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) 391824 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 147.75-67 chr3 26681396 26681903 + 0.5 NA intron (NM_001317810, intron 2 of 2) MIRb|SINE|MIR -12908 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 157.25-36 chr17 58310930 58311513 + 0.5 NA intron (NM_024418, intron 17 of 30) intron (NM_024418, intron 17 of 30) -14229 NR_038410 100506779 Hs.718477 NR_038410 ENSG00000265148 TSPOAP1-AS1 BZRAP1-AS1 TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 ncRNA 201-36 chr6 55478828 55479542 + 0.5 NA intron (NR_109869, intron 3 of 4) intron (NR_109869, intron 3 of 4) 100029 NM_001287753 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 146.25-50 chr20 41757022 41757590 + 0.5 NA Intergenic L1PA11|LINE|L1 -138929 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 172.25-24 chr14 48530037 48530649 + 0.5 NA Intergenic L1MC1|LINE|L1 -735329 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 157-13 chr10 49033713 49034242 + 0.5 NA intron (NM_001031746, intron 7 of 7) intron (NM_001031746, intron 7 of 7) -48390 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 157.75-72 chr4 31452813 31453234 + 0.5 NA Intergenic AluSz|SINE|Alu -53521 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 151.25-20 chr12 116042880 116043214 + 0.5 NA intron (NM_015335, intron 4 of 30) intron (NM_015335, intron 4 of 30) 105607 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 161.75-2 chr1 226436593 226437101 + 0.5 NA Intergenic LTR88b|LTR|Gypsy? -28754 NM_001618 142 Hs.177766 NM_001618 ENSG00000143799 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly(ADP-ribose) polymerase 1 protein-coding 178.75-8 chr1 246981048 246981668 + 0.5 NA intron (NR_037894, intron 4 of 6) L1M2|LINE|L1 26699 NR_037892 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 217.25-6 chr1 218380956 218381651 + 0.5 NA intron (NR_138149, intron 2 of 7) AluY|SINE|Alu -35625 NR_046268 728463 Hs.568469 NR_046268 ENSG00000232480 TGFB2-AS1 - TGFB2 antisense RNA 1 (head to head) ncRNA 147.25-20 chr11 3786759 3787304 + 0.5 NA intron (NR_157590, intron 1 of 31) MIRc|SINE|MIR 10515 NR_157591 4928 Hs.524750 NM_005387 ENSG00000110713 NUP98 ADIR2|NUP196|NUP96 nucleoporin 98 protein-coding 177.5-35 chr3 144379309 144379825 + 0.5 NA Intergenic MLT2A2|LTR|ERVL 406486 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 162.5-21 chr12 31597594 31597955 + 0.5 NA intron (NR_046909, intron 1 of 2) AluJb|SINE|Alu -6638 NM_001366892 160518 Hs.118166 NM_144973 ENSG00000170456 DENND5B - DENN domain containing 5B protein-coding 172.75-12 chr11 85139899 85140434 + 0.5 NA intron (NM_001142699, intron 5 of 27) L1MA9|LINE|L1 -216745 NM_001300983 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 157.25-108 chr9 25849581 25850100 + 0.5 NA Intergenic MER4-int|LTR|ERV1 69784 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 152.75-86 chr6 154227397 154227807 + 0.5 NA intron (NM_015553, intron 5 of 11) AluJb|SINE|Alu 102479 NM_001130699 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 175-37 chr4 189294097 189294586 + 0.5 NA Intergenic Intergenic -365265 NR_121679 101928971 Hs.519164 NR_121679 ENSG00000250739 LINC01262 TCONS_l2_00021807 long intergenic non-protein coding RNA 1262 ncRNA 190.5-42 chr4 34136589 34137180 + 0.5 NA intron (NR_147184, intron 2 of 3) L1PA16|LINE|L1 -96991 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 193-24 chr2 58379366 58379979 + 0.5 NA Intergenic Intergenic 103795 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 195-36 chr4 137184216 137184896 + 0.5 NA intron (NR_149105, intron 1 of 3) L1MA7|LINE|L1 -9200 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 168.5-15 chr10 83265210 83265833 + 0.5 NA Intergenic L1MA5A|LINE|L1 411568 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 148-68 chr4 23159506 23159872 + 0.5 NA Intergenic Intergenic 445600 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 161.5-60 chr3 17366466 17366956 + 0.5 NA intron (NM_014744, intron 13 of 21) intron (NM_014744, intron 13 of 21) 333309 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 168.5-94 chr8 41102750 41103225 + 0.5 NA Intergenic ERVL-B4-int|LTR|ERVL 168156 NR_049801 100847068 NR_049801 ENSG00000263372 MIR548AO - microRNA 548ao ncRNA 163-61 chr4 105598337 105598857 + 0.5 NA intron (NM_001242729, intron 2 of 13) intron (NM_001242729, intron 2 of 13) 37006 NR_046840 100874374 Hs.668908 NR_046840 ENSG00000249885 ARHGEF38-IT1 - ARHGEF38 intronic transcript 1 ncRNA 149.5-94 chr8 78674369 78674740 + 0.5 NA intron (NM_001362969, intron 1 of 9) intron (NM_001362969, intron 1 of 9) 8465 NR_156423 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 155.25-9 chr1 236799245 236799844 + 0.5 NA intron (NM_000254, intron 1 of 32) intron (NM_000254, intron 1 of 32) 4252 NM_001291940 4548 Hs.498187 NM_000254 ENSG00000116984 MTR HMAG|MS|cblG 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 173-25 chr12 85411018 85411687 + 0.5 NA Intergenic Intergenic 131132 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 147.25-48 chr2 113129836 113130244 + 0.5 NA intron (NM_001318914, intron 5 of 6) intron (NM_001318914, intron 5 of 6) 2442 NM_173842 3557 Hs.81134 NM_000577 ENSG00000136689 IL1RN DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4 interleukin 1 receptor antagonist protein-coding 188.25-16 chr14 86799228 86799879 + 0.5 NA Intergenic MER20|DNA|hAT-Charlie -106225 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 209.75 chr1 102848672 102849192 + 0.5 NA Intergenic L1MA2|LINE|L1 259564 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 151-96 chr8 40094562 40095024 + 0.5 NA Intergenic Intergenic -58689 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 230.75-49 chr9 84569425 84569972 + 0.5 NA Intergenic Intergenic -98760 NM_001291937 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 206.75-39 chr4 93413116 93413748 + 0.5 NA intron (NM_001286838, intron 8 of 14) L1PA8|LINE|L1 -415321 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 149.25-95 chr6 162205388 162205840 + 0.5 NA intron (NM_004562, intron 3 of 11) intron (NM_004562, intron 3 of 11) -521518 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 206.5-51 chr8 137976302 137976893 + 0.5 NA intron (NR_161374, intron 2 of 7) L1MEf|LINE|L1 106948 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 154.5-62 chr3 107673199 107673683 + 0.5 NA intron (NM_001276286, intron 3 of 16) intron (NM_001276286, intron 3 of 16) 150479 NM_020235 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 168.5-92 chr7 159209762 159210268 + 0.5 NA Intergenic AluY|SINE|Alu -65058 NM_001304522 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 159.75-20 chr11 62472398 62472808 + 0.5 NA intron (NM_024060, intron 5 of 5) intron (NM_024060, intron 5 of 5) 53570 NM_003357 7356 Hs.523732 NM_003357 ENSG00000149021 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin family 1A member 1 protein-coding 159-7 chr10 8842867 8843462 + 0.5 NA Intergenic Intergenic -54825 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 166.5-82 chr7 84970567 84971083 + 0.5 NA Intergenic Intergenic 151106 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 146-52 chr3 88843523 88843942 + 0.5 NA Intergenic THE1D|LTR|ERVL-MaLR -263889 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 244-15 chr2 210056220 210056830 + 0.5 NA intron (NM_001307976, intron 6 of 13) AluSz|SINE|Alu 26603 NR_110291 101928020 Hs.635556 NR_110291 LOC101928020 - uncharacterized LOC101928020 ncRNA 162-26 chr14 98520873 98521342 + 0.5 NA Intergenic Intergenic -190506 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 163.5-82 chr4 46990923 46991329 + 0.5 NA intron (NM_001204267, intron 2 of 7) AluSz|SINE|Alu 2455 NM_000809 2557 Hs.248112 NM_000809 ENSG00000109158 GABRA4 - gamma-aminobutyric acid type A receptor alpha4 subunit protein-coding 230.75-12 chr14 60921951 60922765 + 0.5 NA intron (NM_001177963, intron 6 of 6) intron (NM_001177963, intron 6 of 6) 58721 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 186-56 chrX 36333312 36333783 + 0.5 NA intron (NM_001304548, intron 57 of 63) L2|LINE|L2 106745 NR_110412 101928627 Hs.590831 NR_110412 ENSG00000226484 LOC101928627 - uncharacterized LOC101928627 ncRNA 150.75-36 chr2 27498710 27499138 + 0.5 NA intron (NM_001486, intron 5 of 18) MER102c|DNA|hAT-Charlie 2085 NM_001486 2646 Hs.89771 NM_001486 ENSG00000084734 GCKR FGQTL5|GKRP glucokinase regulator protein-coding 186.25-39 chr4 45696601 45697238 + 0.5 NA Intergenic MIRb|SINE|MIR 427135 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 164.25-7 chr1 163273484 163273950 + 0.5 NA intron (NM_001254748, intron 2 of 5) L1M4a2|LINE|L1 48074 NM_001254748 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 302.25-8 chr20 50774053 50774791 + 0.5 NA Intergenic Intergenic -20472 NM_198799 55653 Hs.381178 NM_017843 ENSG00000124243 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 153-95 chr9 28616615 28617130 + 0.5 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 102433 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 153-24 chr14 86102803 86103337 + 0.5 NA intron (NR_110155, intron 2 of 3) Zaphod|DNA|hAT-Tip100 168392 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 216.75-5 chr12 9068459 9068956 + 0.5 NA TTS (NR_026971) TTS (NR_026971) 3530 NR_137424 144571 Hs.592432 NR_026971 ENSG00000245105 A2M-AS1 - A2M antisense RNA 1 ncRNA 198.75-15 chr13 58231232 58231863 + 0.5 NA intron (NR_132367, intron 1 of 6) intron (NR_132367, intron 1 of 6) 1570 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 161.75-101 chrX 105467705 105468172 + 0.5 NA intron (NM_017416, intron 5 of 10) MER5A|DNA|hAT-Charlie -247245 NM_001291277 56157 Hs.567543 NM_031274 ENSG00000268629 TEX13A - testis expressed 13A protein-coding 157.5-90 chr6 65769687 65770178 + 0.5 NA Intergenic MIR|SINE|MIR -17947 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 208.5-62 chr8 134949561 134950107 + 0.5 NA Intergenic Intergenic 99899 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 148.25-86 chr7 33878306 33878664 + 0.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR -26430 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 147.5-11 chr10 60558072 60558568 + 0.5 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 14636 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 172.75-38 chr20 39606937 39607446 + 0.5 NA Intergenic Intergenic -382443 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 202-45 chr6 68116875 68117584 + 0.5 NA Intergenic Intergenic 61878 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 176.25-27 chr14 28279451 28280047 + 0.5 NA Intergenic Intergenic 485570 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 161-33 chr15 46217393 46217793 + 0.5 NA Intergenic Intergenic 512398 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 158.75-86 chr8 140702941 140703461 + 0.5 NA intron (NR_148037, intron 26 of 34) AluYc|SINE|Alu 15368 NM_001352751 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 221-27 chr5 128907120 128907663 + 0.5 NA Intergenic Intergenic -57736 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 148-87 chr7 78935585 78936153 + 0.5 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -73119 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 190-65 chr7 89172957 89173458 + 0.5 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -377470 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 166.75-8 chr10 21775269 21775797 + 0.5 NA intron (NM_022365, intron 9 of 11) intron (NM_022365, intron 9 of 11) 228197 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 172-67 chr5 44834242 44834785 + 0.5 NA Intergenic AluSx|SINE|Alu 25566 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 147.5-6 chr1 183678157 183678697 + 0.5 NA intron (NM_001297670, intron 1 of 17) intron (NM_001297670, intron 1 of 17) -25111 NM_203454 403314 Hs.97335 NM_203454 ENSG00000173627 APOBEC4 C1orf169 apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 protein-coding 162.25-78 chr5 113377783 113378429 + 0.5 NA intron (NM_001085377, intron 2 of 18) intron (NM_001085377, intron 2 of 18) 56883 NM_032028 83942 Hs.519507 NM_032028 ENSG00000212122 TSSK1B FKSG81|SPOGA4|STK22D|TSK1|TSSK1 testis specific serine kinase 1B protein-coding 182.25-30 chr2 227580700 227581116 + 0.5 NA Intergenic L1MD|LINE|L1 37747 NR_149019 729968 Hs.689550 NR_149019 LOC729968 - spore coat protein SP96 ncRNA 147.75-46 chr17 63126892 63127262 + 0.5 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 160842 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 181.25-5 chr1 216521747 216522126 + 0.5 NA intron (NM_001243518, intron 6 of 7) intron (NM_001243518, intron 6 of 7) -98488 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 148-29 chr14 62814507 62815025 + 0.5 NA intron (NM_139318, intron 8 of 10) AluSx1|SINE|Alu 230692 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 193.5-40 chr2 193858656 193859335 + 0.5 NA Intergenic Intergenic -485274 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 158.25-20 chr11 37053781 37054395 + 0.5 NA Intergenic MIR|SINE|MIR -455809 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 157.75-63 chr3 34204176 34204565 + 0.5 NA Intergenic MIR|SINE|MIR 405740 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 166.25-3 chr1 159536221 159536792 + 0.5 NA promoter-TSS (NM_001004469) promoter-TSS (NM_001004469) -499 NM_001004469 127385 Hs.553587 NM_001004469 ENSG00000184155 OR10J5 OR1-28 olfactory receptor family 10 subfamily J member 5 protein-coding 195.5-17 chr15 48667156 48667622 + 0.5 NA Intergenic Intergenic -21601 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 209.25-7 chr11 93470158 93470960 + 0.5 NA Intergenic L1PA16|LINE|L1 72832 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 280.75-15 chr8 135487493 135488371 + 0.5 NA intron (NM_006558, intron 1 of 8) intron (NM_006558, intron 1 of 8) 30476 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 238.75-15 chr2 97855416 97856243 + 0.5 NA intron (NM_015348, intron 5 of 40) L1ME3G|LINE|L1 121423 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 182.25-20 chr2 40798220 40798660 + 0.5 NA Intergenic Intergenic -286005 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 147.25-64 chr4 61120632 61120969 + 0.5 NA Intergenic L1MD3|LINE|L1 -22856 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 159.5-8 chr1 234463967 234464386 + 0.5 NA intron (NM_005646, intron 5 of 29) intron (NM_005646, intron 5 of 29) 15003 NM_005646 6894 Hs.498115 NM_005646 ENSG00000059588 TARBP1 TRM3|TRMT3|TRP-185|TRP185 TAR (HIV-1) RNA binding protein 1 protein-coding 181.5-2 chr1 81561664 81562212 + 0.5 NA intron (NM_001366008, intron 2 of 26) intron (NM_001366008, intron 2 of 26) -4236 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 189.5-63 chr7 84505151 84505637 + 0.5 NA Intergenic Intergenic -27082 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 145.75-102 chr6 64474908 64475413 + 0.5 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 668324 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 219-2 chr1 88179485 88180181 + 0.5 NA Intergenic Intergenic -504311 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 163.5-73 chr3 98084081 98084598 + 0.5 NA Intergenic Intergenic -2834 NM_054106 81050 Hs.554715 NM_054106 ENSG00000196578 OR5AC2 HSA1 olfactory receptor family 5 subfamily AC member 2 protein-coding 195-24 chr18 55949855 55950550 + 0.5 NA Intergenic MIRb|SINE|MIR -30003 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA 198.5-19 chr13 69889745 69890228 + 0.5 NA intron (NM_001286725, intron 3 of 9) L2a|LINE|L2 -217227 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 174.5-10 chr1 212334875 212335558 + 0.5 NA intron (NM_006243, intron 3 of 12) AluSp|SINE|Alu -17602 NR_004389 692157 Hs.707958 NR_004389 ENSG00000201544 SNORA16B U98b small nucleolar RNA, H/ACA box 16B snoRNA 167.25-19 chr12 59617400 59618005 + 0.5 NA intron (NM_001270623, intron 1 of 5) intron (NM_001270623, intron 1 of 5) 21673 NM_001270622 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 154.25-60 chr4 59120496 59121070 + 0.5 NA Intergenic Intergenic 107210 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 169.75-64 chr6 20743574 20744248 + 0.5 NA intron (NM_017774, intron 6 of 15) intron (NM_017774, intron 6 of 15) 209454 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 299.5-11 chr7 12187148 12188071 + 0.5 NA Intergenic Intergenic -23685 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 158.75-30 chr15 67601126 67601742 + 0.5 NA intron (NM_001206804, intron 8 of 21) intron (NM_001206804, intron 8 of 21) 52340 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 198.75-10 chr11 100817258 100817898 + 0.5 NA intron (NM_001367945, intron 4 of 25) intron (NM_001367945, intron 4 of 25) -116696 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 154.5-51 chr20 4331672 4332119 + 0.5 NA Intergenic Intergenic -82608 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 158.5-84 chr5 45754409 45754951 + 0.5 NA Intergenic MER30|DNA|hAT-Charlie -58300 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 149.25-101 chr8 11151603 11152105 + 0.5 NA intron (NR_138154, intron 1 of 2) intron (NR_138154, intron 1 of 2) 49512 NR_138154 286046 Hs.657083 NM_173683 ENSG00000171044 XKR6 C8orf21|C8orf5|C8orf7|XRG6 XK related 6 protein-coding 147.75-12 chr1 213014065 213014523 + 0.5 NA intron (NM_144567, intron 1 of 8) intron (NM_144567, intron 1 of 8) 1215 NM_001300755 90806 Hs.157078 NM_144567 ENSG00000174606 ANGEL2 Ccr4d|KIAA0759L angel homolog 2 protein-coding 179.75-50 chr6 51693635 51694033 + 0.5 NA intron (NM_138694, intron 60 of 66) MIR|SINE|MIR 71964 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 161.25-2 chr1 147842396 147842825 + 0.5 NA Intergenic AluSz|SINE|Alu -60185 NM_005267 2703 Hs.632441 NM_005267 ENSG00000121634 GJA8 CAE|CAE1|CTRCT1|CX50|CZP1|MP70 gap junction protein alpha 8 protein-coding 256.75-7 chr12 43405488 43406447 + 0.5 NA intron (NM_025003, intron 28 of 38) intron (NM_025003, intron 28 of 38) 146236 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 156-16 chr12 33182332 33182786 + 0.5 NA Intergenic LTR34|LTR|ERV1 257260 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 229.75-10 chr14 85845102 85845847 + 0.5 NA Intergenic Intergenic -89204 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 171.75-83 chr8 22502987 22503638 + 0.5 NA intron (NM_005605, intron 4 of 13) intron (NM_005605, intron 4 of 13) -48615 NM_005775 10174 Hs.528572 NM_005775 ENSG00000120896 SORBS3 SCAM-1|SCAM1|SH3D4 sorbin and SH3 domain containing 3 protein-coding 162.5-70 chr5 8546026 8546655 + 0.5 NA Intergenic L1MA9|LINE|L1 85415 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 151.75-46 chr2 114284010 114284426 + 0.5 NA Intergenic Intergenic -158423 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 157.75-9 chr1 194428517 194429032 + 0.5 NA Intergenic Intergenic 1124029 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 154.25-6 chr10 20997671 20998134 + 0.5 NA intron (NM_001173484, intron 3 of 6) intron (NM_001173484, intron 3 of 6) -100300 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 158-60 chr4 115559231 115559801 + 0.5 NA Intergenic Intergenic -445896 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 162.75-49 chr3 68553760 68554162 + 0.5 NA Intergenic L3|LINE|CR1 53324 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 160.5-24 chr12 79516071 79516529 + 0.5 NA Intergenic AluSp|SINE|Alu 97043 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 145.75-84 chr3 189213714 189214175 + 0.5 NA intron (NM_198485, intron 2 of 5) L1ME4b|LINE|L1 26650 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 245.5-34 chr7 51098781 51099672 + 0.5 NA intron (NM_015198, intron 6 of 12) L1MB2|LINE|L1 217583 NM_015198 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 166-53 chr4 176836518 176837158 + 0.5 NA Intergenic Intergenic -38864 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 216.75-10 chr17 61281575 61282136 + 0.5 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 85849 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 160.5-34 chr14 85255003 85255578 + 0.5 NA Intergenic Intergenic -16642 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 160-48 chr21 14654512 14655044 + 0.5 NA Intergenic L1MEi|LINE|L1 -11671 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 195.5-71 chr8 138078489 138079058 + 0.5 NA intron (NR_161374, intron 1 of 7) MER33|DNA|hAT-Charlie 4772 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 185-12 chr11 60906818 60907334 + 0.5 NA promoter-TSS (NM_014502) promoter-TSS (NM_014502) -491 NM_014502 27339 Hs.502705 NM_014502 ENSG00000110107 PRPF19 NMP200|PRP19|PSO4|SNEV|UBOX4|hPSO4 pre-mRNA processing factor 19 protein-coding 149.5-96 chr8 99484107 99484491 + 0.5 NA intron (NM_017890, intron 25 of 61) intron (NM_017890, intron 25 of 61) 52431 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 152.25-42 chr2 39131772 39132210 + 0.5 NA Intergenic MLT2B3|LTR|ERVL -11528 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 166-81 chr8 135255486 135256067 + 0.5 NA intron (NR_120396, intron 1 of 4) MIRb|SINE|MIR 21645 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 197-7 chr14 53817280 53817838 + 0.5 NA Intergenic MER103C|DNA|hAT-Charlie 130925 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 196-2 chr1 101417292 101417827 + 0.5 NA Intergenic MLT1A|LTR|ERVL-MaLR 93722 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 149.75-9 chr1 228836611 228837017 + 0.5 NA Intergenic Intergenic 101335 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 156.5-84 chr5 59863401 59863989 + 0.5 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 30031 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 199-25 chr3 64347862 64348475 + 0.5 NA Intergenic L2b|LINE|L2 -79995 NM_001370528 166336 Hs.148105 NM_198859 ENSG00000163637 PRICKLE2 EPM5 prickle planar cell polarity protein 2 protein-coding 161.75-96 chr9 5944617 5945123 + 0.5 NA intron (NM_001017969, intron 5 of 7) intron (NM_001017969, intron 5 of 7) 53981 NM_005511 2315 Hs.154069 NM_005511 ENSG00000120215 MLANA MART-1|MART1 melan-A protein-coding 169.25-11 chr13 82789704 82790356 + 0.5 NA Intergenic Intergenic 1092363 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 277.75-12 chr4 109373616 109374397 + 0.5 NA Intergenic Intergenic -59709 NM_001318085 10427 Hs.292472 NM_006323 ENSG00000138802 SEC24B SEC24 SEC24 homolog B, COPII coat complex component protein-coding 157.25-61 chr3 20084854 20085391 + 0.5 NA intron (NM_003884, intron 2 of 17) AluJo|SINE|Alu 44676 NM_003884 8850 Hs.533055 NM_003884 ENSG00000114166 KAT2B CAF|P/CAF|PCAF lysine acetyltransferase 2B protein-coding 269-9 chr4 83930141 83931003 + 0.5 NA Intergenic MIR|SINE|MIR 368597 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 187.5-51 chr4 82398837 82399462 + 0.5 NA Intergenic AluY|SINE|Alu -25153 NM_002138 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 181-29 chr22 24681912 24682577 + 0.5 NA Intergenic L1PA10|LINE|L1 -23097 NR_024593 646074 Hs.531306 NM_001025230 POM121L10P - POM121 transmembrane nucleoporin like 10, pseudogene pseudo 163-76 chr7 28543374 28543855 + 0.5 NA intron (NM_182899, intron 3 of 9) intron (NM_182899, intron 3 of 9) 107999 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 186-46 chr6 161563499 161564007 + 0.5 NA intron (NM_004562, intron 8 of 11) intron (NM_004562, intron 8 of 11) 92776 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 214.75-33 chr4 62381623 62382287 + 0.5 NA Intergenic L1MA7|LINE|L1 -220190 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 169-76 chr9 10003229 10003784 + 0.5 NA intron (NM_002839, intron 4 of 45) intron (NM_002839, intron 4 of 45) 204114 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 166.25-49 chr4 107771049 107771423 + 0.5 NA Intergenic L1MC1|LINE|L1 -51002 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 166.5-73 chr6 63098890 63099533 + 0.5 NA Intergenic AluSc8|SINE|Alu 220766 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 147.5-89 chr6 76236145 76236689 + 0.5 NA Intergenic Intergenic -163739 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 182.25-45 chr5 129968633 129969052 + 0.5 NA intron (NM_175856, intron 2 of 2) MER5A|DNA|hAT-Charlie 64377 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 179.25-54 chr4 172901436 172901981 + 0.5 NA intron (NM_001034845, intron 8 of 12) intron (NM_001034845, intron 8 of 12) -174830 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 157.75-95 chr6 35354673 35355103 + 0.5 NA intron (NM_001171819, intron 2 of 6) MIRb|SINE|MIR 12330 NM_001171818 5467 Hs.696032 NM_006238 ENSG00000112033 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator activated receptor delta protein-coding 187.5-69 chr8 117805752 117806315 + 0.5 NA intron (NM_000127, intron 9 of 10) L2|LINE|L2 114880 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 162.25-9 chr11 5989473 5989985 + 0.5 NA Intergenic L1PB3|LINE|L1 -2744 NM_001005173 338751 Hs.553703 NM_001005173 ENSG00000183313 OR52L1 OR11-50 olfactory receptor family 52 subfamily L member 1 protein-coding 165.25-11 chr11 65251192 65251821 + 0.5 NA Intergenic AluSq2|SINE|Alu -10456 NM_002689 23649 Hs.201897 NM_002689 ENSG00000014138 POLA2 - DNA polymerase alpha 2, accessory subunit protein-coding 172.75-2 chr1 77656500 77657014 + 0.5 NA intron (NM_001308237, intron 1 of 13) intron (NM_001308237, intron 1 of 13) 25901 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 201.25-50 chr8 120720003 120720593 + 0.5 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -40955 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 278-9 chr5 131882138 131882944 + 0.5 NA intron (NM_001303622, intron 8 of 12) intron (NM_001303622, intron 8 of 12) 63122 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 173.5-91 chr8 136469351 136469849 + 0.5 NA Intergenic Intergenic -61198 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 201.75-19 chr19 44035595 44036381 + 0.5 NA Intergenic AluSx1|SINE|Alu 10609 NM_001129996 7673 Hs.279840 NM_013360 ENSG00000159885 ZNF222 - zinc finger protein 222 protein-coding 165-72 chr6 24860317 24860944 + 0.5 NA intron (NM_001286445, intron 8 of 21) L1MC5a|LINE|L1 16640 NM_015864 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 188-23 chr15 83940748 83941219 + 0.5 NA intron (NM_207517, intron 17 of 29) intron (NM_207517, intron 17 of 29) -139204 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 187.75-8 chr10 55827404 55827987 + 0.5 NA Intergenic Intergenic -199753 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 240-9 chr14 70383341 70384216 + 0.5 NA intron (NM_001202549, intron 2 of 4) intron (NM_001202549, intron 2 of 4) -24095 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 151.25-19 chr12 108379197 108379619 + 0.5 NA Intergenic AluSx|SINE|Alu -40097 NM_001142344 1240 Hs.197143 NM_004072 ENSG00000174600 CMKLR1 CHEMERINR|ChemR23|DEZ|RVER1 chemerin chemokine-like receptor 1 protein-coding 166.5-88 chr8 38780962 38781456 + 0.5 NA intron (NM_001352804, intron 1 of 10) intron (NM_001352804, intron 1 of 10) -6027 NM_006283 6867 Hs.279245 NM_006283 ENSG00000147526 TACC1 Ga55 transforming acidic coiled-coil containing protein 1 protein-coding 150-18 chr11 63732579 63732936 + 0.5 NA intron (NM_001265589, intron 3 of 8) L1MEf|LINE|L1 36018 NM_001144936 65998 Hs.191073 NM_001144936 ENSG00000188070 C11orf95 - chromosome 11 open reading frame 95 protein-coding 173.25-21 chr13 26219732 26220322 + 0.5 NA intron (NM_183044, intron 2 of 4) intron (NM_183044, intron 2 of 4) 1730 NM_183044 6049 Hs.136885 NM_005977 ENSG00000127870 RNF6 - ring finger protein 6 protein-coding 155-52 chr3 3358525 3358897 + 0.5 NA Intergenic Intergenic -178994 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 152-6 chr10 35461311 35461776 + 0.5 NA intron (NM_001282853, intron 2 of 10) MER31A|LTR|ERV1 124669 NM_001282853 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 208-22 chr3 27884843 27885604 + 0.5 NA Intergenic Intergenic -51087 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 147-65 chr3 88411502 88412028 + 0.5 NA intron (NM_001368168, intron 2 of 2) Charlie5|DNA|hAT-Charlie 73309 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 169.75-54 chr4 136657164 136657658 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -536345 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 186.25-22 chr2 15974133 15974767 + 0.5 NA Intergenic Intergenic -32017 NR_161163 10408 Hs.651453 NR_110230 ENSG00000233718 MYCNOS MYCN-AS1|N-CYM|NCYM|NYCM MYCN opposite strand ncRNA 250-8 chr2 22290969 22291549 + 0.5 NA Intergenic Intergenic -245220 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 187.25-60 chr7 9660625 9661076 + 0.5 NA Intergenic Intergenic 26580 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 224.25-12 chr15 24825885 24826574 + 0.5 NA intron (NM_022808, intron 1 of 11) intron (NM_022808, intron 1 of 11) 2621 NM_001349459 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 209.25-16 chr18 34013377 34013856 + 0.5 NA intron (NM_001353232, intron 6 of 9) L2a|LINE|L2 34996 NM_001353236 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 168.25-26 chr18 5563321 5563967 + 0.5 NA intron (NM_001281535, intron 3 of 21) intron (NM_001281535, intron 3 of 21) -19305 NM_001330557 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 154-91 chr5 160543984 160544436 + 0.5 NA Intergenic L1MA4|LINE|L1 58858 NR_029701 406938 NR_029701 ENSG00000283733 MIR146A MIRN146|MIRN146A|miR-146a|miRNA146A microRNA 146a ncRNA 169.5-54 chr3 36185970 36186437 + 0.5 NA Intergenic MIR|SINE|MIR -194284 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 208-23 chr4 44605603 44606111 + 0.5 NA Intergenic MER63D|DNA|hAT-Blackjack 45784 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 154.25-59 chr4 44579094 44579598 + 0.5 NA Intergenic L2c|LINE|L2 72295 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 164.25-33 chr16 25137633 25138063 + 0.5 NA intron (NM_001032391, intron 3 of 8) intron (NM_001032391, intron 3 of 8) 11184 NR_039998 100506655 Hs.657576 NR_039998 ENSG00000260034 LCMT1-AS2 - LCMT1 antisense RNA 2 ncRNA 201-7 chr10 62666064 62666785 + 0.5 NA intron (NM_199451, intron 7 of 7) MLT1C|LTR|ERVL-MaLR -138296 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 158-4 chr1 81826238 81826634 + 0.5 NA intron (NM_001366002, intron 2 of 20) intron (NM_001366002, intron 2 of 20) 23983 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 186.75-25 chr14 25460427 25460940 + 0.5 NA Intergenic MER4B|LTR|ERV1 -410386 NM_001351941 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 172.5-13 chr11 102654877 102655412 + 0.5 NA Intergenic Intergenic -29812 NM_004771 9313 Hs.591946 NM_004771 ENSG00000137674 MMP20 AI2A2|MMP-20 matrix metallopeptidase 20 protein-coding 151-4 chr1 236607671 236608224 + 0.5 NA Intergenic AluSq2|SINE|Alu -3431 NM_018072 55127 Hs.708114 NM_018072 ENSG00000119285 HEATR1 BAP28|UTP10 HEAT repeat containing 1 protein-coding 145.75-33 chr14 69335332 69335788 + 0.5 NA intron (NM_020692, intron 9 of 15) intron (NM_020692, intron 9 of 15) 62739 NM_004450 2079 Hs.509791 NM_004450 ENSG00000100632 ERH DROER ERH mRNA splicing and mitosis factor protein-coding 164.25-91 chr9 27062768 27063311 + 0.5 NA 3' UTR (NM_001349928, exon 20 of 20) 3' UTR (NM_001349928, exon 20 of 20) -46102 NM_001290078 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 149.75-89 chr6 156209228 156209605 + 0.5 NA Intergenic L1MA4A|LINE|L1 -169334 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 170-54 chr6 86543023 86543418 + 0.5 NA Intergenic L1PA15|LINE|L1 -394308 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 163-65 chr5 66745338 66745812 + 0.5 NA intron (NM_001290228, intron 1 of 4) intron (NM_001290228, intron 1 of 4) -83198 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 226-32 chr8 78129616 78130311 + 0.5 NA Intergenic Intergenic -386377 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 154.5-70 chr4 58222297 58222859 + 0.5 NA Intergenic Intergenic 313750 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 171.25-30 chr2 33854068 33854620 + 0.5 NA intron (NR_126403, intron 1 of 5) intron (NR_126403, intron 1 of 5) -126127 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 155.75-48 chr18 71279804 71280278 + 0.5 NA Intergenic Intergenic 298915 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 162.75-73 chr6 113239779 113240341 + 0.5 NA Intergenic Intergenic 193387 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 157-4 chr1 108837516 108837928 + 0.5 NA intron (NM_152763, intron 6 of 15) intron (NM_152763, intron 6 of 15) 19372 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 176.5-7 chr10 66426622 66427090 + 0.5 NA intron (NM_001127384, intron 11 of 17) L1MEd|LINE|L1 -499180 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 153.5-22 chr11 132026008 132026507 + 0.5 NA intron (NR_147849, intron 2 of 6) intron (NR_147849, intron 2 of 6) 115439 NM_001352008 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 150.25-31 chr14 40170539 40171039 + 0.5 NA Intergenic Intergenic -738289 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 177.5-39 chr4 33726165 33726628 + 0.5 NA Intergenic Intergenic 313497 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 200.5-6 chr10 75759307 75759828 + 0.5 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) -23194 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 235.5-3 chr1 87315590 87316316 + 0.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -12927 NM_006769 8543 Hs.436792 NM_006769 ENSG00000143013 LMO4 - LIM domain only 4 protein-coding 249.25-6 chr14 65540294 65541027 + 0.5 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) 69558 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 203.5-16 chr12 117686906 117687671 + 0.5 NA intron (NM_173598, intron 4 of 19) intron (NM_173598, intron 4 of 19) 281702 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 233-17 chr2 75229838 75230360 + 0.5 NA Intergenic Intergenic -30579 NM_015727 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 166-5 chr1 119453329 119453749 + 0.5 NA Intergenic Intergenic 38389 NM_000198 3284 Hs.654399 NM_000198 ENSG00000203859 HSD3B2 HSD3B|HSDB|SDR11E2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 protein-coding 225.25-27 chr3 183666536 183667086 + 0.5 NA intron (NM_001349426, intron 4 of 6) intron (NM_001349426, intron 4 of 6) -30986 NM_018023 55689 Hs.632575 NM_018023 ENSG00000163872 YEATS2 - YEATS domain containing 2 protein-coding 201.25-11 chr14 25063990 25064646 + 0.5 NA Intergenic Intergenic -14021 NM_001351941 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 158.5-74 chr4 62871102 62871632 + 0.5 NA Intergenic MIR|SINE|MIR -709602 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 150.75-23 chr14 79091346 79091766 + 0.5 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -108426 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 203.75-35 chr5 9979888 9980441 + 0.5 NA Intergenic Intergenic -76340 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 185.75-46 chr21 18398764 18399340 + 0.5 NA intron (NM_002772, intron 1 of 24) intron (NM_002772, intron 1 of 24) 4733 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 190-30 chr2 156524915 156525380 + 0.5 NA intron (NM_000408, intron 6 of 16) L1MC5|LINE|L1 88768 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 190.25-46 chr6 153473388 153473921 + 0.5 NA Intergenic Intergenic -342372 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 165.75-56 chr22 27231611 27232211 + 0.5 NA Intergenic Intergenic -7232 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 153.75-15 chr14 47922142 47922474 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL -127294 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 228.25-14 chr2 54840761 54841365 + 0.5 NA intron (NM_001039753, intron 6 of 40) intron (NM_001039753, intron 6 of 40) 116051 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 150.5-71 chr21 21089421 21089936 + 0.5 NA intron (NM_001352595, intron 1 of 14) intron (NM_001352595, intron 1 of 14) -57484 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 153.25-22 chr11 32930282 32930641 + 0.5 NA intron (NM_001076786, intron 3 of 12) intron (NM_001076786, intron 3 of 12) 37650 NM_001076786 79832 Hs.369368 NM_024774 ENSG00000060749 QSER1 - glutamine and serine rich 1 protein-coding 147.5-86 chr6 62245837 62246330 + 0.5 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 40142 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 170.5-17 chr14 43934140 43934695 + 0.5 NA Intergenic L1MC1|LINE|L1 572866 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 150-36 chr2 54037130 54037554 + 0.5 NA intron (NM_001320587, intron 2 of 5) AluSx1|SINE|Alu 66229 NM_001320587 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 181.25-19 chr16 63051469 63052110 + 0.5 NA Intergenic Intergenic -1015351 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 197.25-5 chr1 187330271 187330840 + 0.5 NA intron (NR_126347, intron 3 of 3) intron (NR_126347, intron 3 of 3) -113073 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 151.25-65 chr3 180223761 180224124 + 0.5 NA Intergenic Intergenic -187005 NM_001256753 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 179-39 chr3 19469872 19470349 + 0.5 NA intron (NM_144633, intron 11 of 15) intron (NM_144633, intron 11 of 15) -155179 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 238.5 chr1 85543810 85544578 + 0.5 NA intron (NM_001134445, intron 1 of 6) intron (NM_001134445, intron 1 of 6) 34006 NM_001134445 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 162.75-77 chr7 31493389 31493945 + 0.5 NA Intergenic Intergenic -20404 NM_001257967 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 182.75-4 chr1 196127436 196127958 + 0.5 NA Intergenic Intergenic -38982 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 161-19 chr11 112422525 112423078 + 0.5 NA Intergenic Intergenic -59431 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 176-68 chr8 141885989 141886435 + 0.5 NA Intergenic L1MEi|LINE|L1 -99899 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 172.25-21 chr13 21570032 21570502 + 0.5 NA intron (NM_152726, intron 1 of 11) intron (NM_152726, intron 1 of 11) 33903 NM_152726 221154 Hs.412103 NM_152726 ENSG00000165487 MICU2 1110008L20Rik|EFHA1 mitochondrial calcium uptake 2 protein-coding 177.25-38 chr2 123951704 123952230 + 0.5 NA Intergenic L1MD|LINE|L1 73207 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 183-62 chr9 102781984 102782609 + 0.5 NA Intergenic Intergenic -213037 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 162.25-58 chr4 66496358 66496735 + 0.5 NA Intergenic MER97a|DNA|hAT-Tip100 219722 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 153.75-26 chr17 65099296 65099824 + 0.5 NA Intergenic Intergenic -1252 NR_110801 100507002 Hs.729924 NR_110801 LOC100507002 - uncharacterized LOC100507002 ncRNA 173.75-35 chr2 115287049 115287580 + 0.5 NA intron (NM_001321906, intron 2 of 26) L1PB3|LINE|L1 -21923 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 149.25-107 chr8 47580315 47580802 + 0.5 NA intron (NM_001352958, intron 10 of 21) MIR|SINE|MIR -73530 NM_001352959 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 167.5-54 chr21 27000116 27000531 + 0.5 NA Intergenic Intergenic -33235 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 148-54 chr2 163368858 163369274 + 0.5 NA Intergenic Intergenic 366942 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 183.25-40 chr20 13293237 13293677 + 0.5 NA intron (NM_080826, intron 5 of 5) intron (NM_080826, intron 5 of 5) -53770 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 207.25-40 chr3 82382254 82382992 + 0.5 NA intron (NR_147146, intron 3 of 8) intron (NR_147146, intron 3 of 8) 396481 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 164-47 chr3 34966123 34966564 + 0.5 NA intron (NR_110817, intron 2 of 3) L2a|LINE|L2 427680 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 166-23 chr14 62922365 62922911 + 0.5 NA intron (NM_139318, intron 7 of 10) L1MA9|LINE|L1 122820 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 180.25-52 chr4 85520656 85521215 + 0.5 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 45785 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 181.75-39 chr20 54703302 54703707 + 0.5 NA Intergenic (TTTC)n|Simple_repeat|Simple_repeat 227911 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 146.5-104 chr8 127905915 127906399 + 0.5 NA intron (NR_003367, intron 2 of 8) MIRc|SINE|MIR 42566 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 151.5-41 chr18 50998846 50999184 + 0.5 NA Intergenic Intergenic 30975 NM_018696 55520 Hs.657360 NM_018696 ENSG00000141642 ELAC1 D29 elaC ribonuclease Z 1 protein-coding 159-75 chr6 123571597 123572089 + 0.5 NA intron (NM_001256020, intron 1 of 8) intron (NM_001256020, intron 1 of 8) 65107 NM_006073 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 200.5-35 chr20 53945040 53945528 + 0.5 NA intron (NM_001366297, intron 8 of 8) MIR|SINE|MIR -69575 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 150.5-127 chr9 118884293 118884870 + 0.5 NA Intergenic L2a|LINE|L2 204910 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 161-78 chr6 123890878 123891466 + 0.5 NA intron (NM_001040214, intron 1 of 6) L1MB4|LINE|L1 87307 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 158.75-50 chr3 81705001 81705579 + 0.5 NA intron (NM_000158, intron 2 of 15) intron (NM_000158, intron 2 of 15) 56355 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 223-15 chr2 116563788 116564485 + 0.5 NA Intergenic Intergenic 1220321 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 225.25-21 chr20 19605399 19605987 + 0.5 NA intron (NM_020689, intron 6 of 16) intron (NM_020689, intron 6 of 16) -280828 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 281-4 chr16 53777632 53778642 + 0.5 NA intron (NM_001363897, intron 1 of 7) Charlie1a|DNA|hAT-Charlie 73981 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 163.5-96 chr6 1240087 1240578 + 0.5 NA Intergenic Intergenic -71766 NM_033260 94234 Hs.591352 NM_033260 ENSG00000164379 FOXQ1 HFH1 forkhead box Q1 protein-coding 164.75-74 chr6 90970971 90971409 + 0.5 NA Intergenic Intergenic -384118 NM_145333 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 151.25-44 chr2 124228749 124229227 + 0.5 NA intron (NM_130773, intron 2 of 23) intron (NM_130773, intron 2 of 23) 203701 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 150-21 chr12 32865644 32866065 + 0.5 NA intron (NM_001005242, intron 4 of 12) L1ME1|LINE|L1 30992 NM_004572 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 165-77 chr6 120585503 120585989 + 0.5 NA Intergenic L1ME4a|LINE|L1 570567 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 152-39 chr2 116618827 116619279 + 0.5 NA Intergenic L1MA9|LINE|L1 -1195638 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 189.75-8 chr1 99560938 99561492 + 0.5 NA intron (NR_031666, intron 1 of 4) intron (NR_031666, intron 1 of 4) -73411 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 164.75-78 chr6 132084001 132084509 + 0.5 NA Intergenic Intergenic 31008 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 208.5-28 chr2 9027123 9027749 + 0.5 NA Intergenic AluSq2|SINE|Alu -23752 NM_138799 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 163.25-75 chr7 107230127 107230636 + 0.5 NA intron (NM_181733, intron 18 of 20) intron (NM_181733, intron 18 of 20) 61378 NM_012257 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 201.5-49 chr4 165127231 165127864 + 0.5 NA Intergenic MLT2B3|LTR|ERVL -14687 NM_001100389 201931 Hs.704511 NM_152681 ENSG00000170088 TMEM192 - transmembrane protein 192 protein-coding 225.25-30 chr5 16223176 16224070 + 0.5 NA Intergenic Intergenic 43382 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 159.5-107 chrX 154686852 154687310 + 0.5 NA intron (NR_104114, intron 7 of 8) AluSz|SINE|Alu -33502 NM_172377 30848 Hs.87225 NM_020994 ENSG00000126890 CTAG2 CAMEL|CT2|CT6.2|CT6.2a|CT6.2b|ESO2|LAGE-1|LAGE2B cancer/testis antigen 2 protein-coding 197-21 chr2 101334454 101335108 + 0.5 NA Intergenic AluSz6|SINE|Alu 25331 NR_049881 100847007 NR_049881 ENSG00000264857 MIR5696 - microRNA 5696 ncRNA 184.25-6 chr1 186724287 186724803 + 0.5 NA Intergenic L1PA7|LINE|L1 43891 NR_125801 103752588 Hs.441636 NR_125801 ENSG00000273129 PACERR PACER|PTGS2-AS1|PTGS2AS1 PTGS2 antisense NFKB1 complex-mediated expression regulator RNA ncRNA 150.5-48 chr18 40125577 40126026 + 0.5 NA Intergenic L1MEi|LINE|L1 59515 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 188-8 chr1 115446163 115446759 + 0.5 NA Intergenic L1ME4c|LINE|L1 -108225 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 167-54 chr3 68402844 68403260 + 0.5 NA intron (NM_001252216, intron 2 of 4) Tigger3a|DNA|TcMar-Tigger -97585 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 157.25-31 chr15 59385910 59386505 + 0.5 NA Intergenic AluSq2|SINE|Alu -13336 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 177.5-33 chr3 85913331 85913793 + 0.5 NA intron (NM_001256502, intron 6 of 10) L2a|LINE|L2 -85512 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 207.5-36 chr5 120794080 120794682 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 262917 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 164.25-76 chr6 89137045 89137435 + 0.5 NA Intergenic Intergenic -8815 NM_001010853 135293 Hs.356247 NM_001010853 ENSG00000146281 PM20D2 ACY1L2 peptidase M20 domain containing 2 protein-coding 148-47 chr2 24422465 24422841 + 0.5 NA Intergenic Intergenic -62117 NM_019595 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 193.25-18 chr13 74446508 74446933 + 0.5 NA Intergenic AluSx|SINE|Alu 27547 NR_047005 100874151 Hs.564552 NR_047005 ENSG00000226240 LINC00381 - long intergenic non-protein coding RNA 381 ncRNA 172-88 chr8 120135150 120135818 + 0.5 NA intron (NM_021110, intron 1 of 47) AluSx|SINE|Alu 10382 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 189-21 chr14 60403295 60404023 + 0.5 NA Intergenic Intergenic 80463 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 152.75-6 chr1 81103784 81104392 + 0.5 NA Intergenic MamGypLTR2c|LTR|Gypsy -202104 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 147-97 chr6 37314375 37314741 + 0.5 NA intron (NR_130108, intron 10 of 12) intron (NR_130108, intron 10 of 12) -39425 NM_183078 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding 191.5 chr1 49754907 49755375 + 0.5 NA intron (NM_001323575, intron 2 of 12) MLT2D|LTR|ERVL 268813 NM_001323575 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 165.75-103 chr8 81731700 81732216 + 0.5 NA promoter-TSS (NM_152284) promoter-TSS (NM_152284) -490 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 213-18 chr3 7580262 7580919 + 0.5 NA intron (NM_000844, intron 8 of 9) intron (NM_000844, intron 8 of 9) -45306 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 149.5-14 chr11 43454422 43454801 + 0.5 NA intron (NM_018259, intron 21 of 23) L1M8|LINE|L1 95691 NM_018259 55761 Hs.191186 NM_018259 ENSG00000052841 TTC17 - tetratricopeptide repeat domain 17 protein-coding 153.25-7 chr1 70361535 70362129 + 0.5 NA intron (NM_001036645, intron 1 of 2) intron (NM_001036645, intron 1 of 2) 7021 NM_001036646 11147 Hs.142245 NM_007071 ENSG00000197568 HHLA3 - HERV-H LTR-associating 3 protein-coding 147.5-58 chr3 39681032 39681566 + 0.5 NA Intergenic MER2|DNA|TcMar-Tigger -127615 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 188.25-44 chr5 25879420 25880134 + 0.5 NA Intergenic AluYf1|SINE|Alu 688824 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 153.75-36 chr2 159737440 159737770 + 0.5 NA intron (NM_001282807, intron 1 of 8) AluJr|SINE|Alu 3641 NM_001282807 64844 Hs.529272 NM_022826 ENSG00000136536 MARCH7 AXO|AXOT|MARCH-VII|RNF177 membrane associated ring-CH-type finger 7 protein-coding 152.5-57 chr2 183568824 183569284 + 0.5 NA Intergenic Intergenic 444611 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 146.75-61 chr20 6840150 6840542 + 0.5 NA Intergenic L1ME4c|LINE|L1 72660 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 230.25-17 chr18 41486596 41487155 + 0.5 NA intron (NR_002838, intron 3 of 5) intron (NR_002838, intron 3 of 5) 33802 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 150-23 chr12 82492320 82492901 + 0.5 NA Intergenic L1MA8|LINE|L1 -133805 NR_033192 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 173.75-22 chr14 25763400 25763974 + 0.5 NA Intergenic Intergenic -713390 NM_001351941 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 147.5-101 chr8 54851520 54852086 + 0.5 NA Intergenic Intergenic 235707 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 145.75-64 chr20 43517279 43517724 + 0.5 NA intron (NM_032107, intron 7 of 21) AluJo|SINE|Alu 3060 NM_015478 26013 Hs.709356 NM_015478 ENSG00000185513 L3MBTL1 H-L(3)MBT|L3MBTL|ZC2HC3|dJ138B7.3 L3MBTL histone methyl-lysine binding protein 1 protein-coding 153-81 chr6 140227930 140228431 + 0.5 NA Intergenic MER63C|DNA|hAT-Blackjack 22928 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 208.25-8 chr1 209642347 209642910 + 0.5 NA intron (NM_001017402, intron 2 of 21) AluSz|SINE|Alu 8706 NM_001017402 3914 Hs.497636 NM_000228 ENSG00000196878 LAMB3 AI1A|BM600-125KDA|LAM5|LAMNB1 laminin subunit beta 3 protein-coding 163.75-15 chr11 42655137 42655778 + 0.5 NA Intergenic L1PA10|LINE|L1 -401767 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 219.5-22 chr5 67131553 67132088 + 0.5 NA exon (NM_001290226, exon 14 of 27) exon (NM_001290226, exon 14 of 27) 64979 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 292.5-11 chr8 4592016 4592825 + 0.5 NA intron (NM_033225, intron 2 of 69) AluSx1|SINE|Alu 402494 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 160.75-103 chr7 141227343 141227757 + 0.5 NA intron (NM_001195278, intron 2 of 3) MIR|SINE|MIR 153486 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 157.25-54 chr2 184634058 184634412 + 0.5 NA intron (NM_194250, intron 1 of 3) Arthur1|DNA|hAT-Tip100 35706 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 188.75-68 chr9 124145991 124146411 + 0.5 NA Intergenic LTR8|LTR|ERV1 -111405 NM_001166167 10783 Hs.197071 NM_014397 ENSG00000119408 NEK6 SID6-1512 NIMA related kinase 6 protein-coding 219.75-32 chr4 87089264 87089899 + 0.5 NA intron (NM_005935, intron 4 of 19) intron (NM_005935, intron 4 of 19) 82580 NM_005935 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 264.75-2 chr11 76975236 76976267 + 0.5 NA intron (NM_001300954, intron 3 of 10) intron (NM_001300954, intron 3 of 10) -58647 NM_138706 192134 Hs.352622 NM_138706 ENSG00000198488 B3GNT6 B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding 160.5-33 chr14 84395192 84395693 + 0.5 NA Intergenic L2|LINE|L2 -876490 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 204.25-13 chr14 59312434 59313147 + 0.5 NA intron (NM_001270520, intron 3 of 24) intron (NM_001270520, intron 3 of 24) 49349 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 161.75-12 chr12 99454490 99454856 + 0.5 NA intron (NM_152788, intron 10 of 25) intron (NM_152788, intron 10 of 25) -193080 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 157-57 chr21 30251636 30252237 + 0.5 NA Intergenic Intergenic 31014 NM_001085455 643803 Hs.580883 NM_001085455 ENSG00000188694 KRTAP24-1 KAP24.1 keratin associated protein 24-1 protein-coding 156.75-65 chr3 94800154 94800588 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -137892 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 249.25-16 chr5 78927257 78928070 + 0.5 NA intron (NM_198709, intron 5 of 7) intron (NM_198709, intron 5 of 7) 57647 NM_000046 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 173.5-46 chr22 31985940 31986610 + 0.5 NA intron (NR_149128, intron 3 of 4) (AC)n|Simple_repeat|Simple_repeat 15452 NR_149128 105372999 Hs.512525 NR_149128 LINC02558 - long intergenic non-protein coding RNA 2558 ncRNA 161-42 chr19 38314069 38314605 + 0.5 NA intron (NM_001145463, intron 1 of 8) AluSx4|SINE|Alu 1443 NM_001039671 90522 Hs.280741 NM_033557 ENSG00000167645 YIF1B FinGER8 Yip1 interacting factor homolog B, membrane trafficking protein protein-coding 198.25-46 chr5 137304471 137305107 + 0.5 NA intron (NM_004598, intron 2 of 10) MIR|SINE|MIR 176592 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 150.5-53 chr19 55995507 55995921 + 0.5 NA Intergenic L1MA5|LINE|L1 -4012 NM_153447 126206 Hs.356872 NM_153447 ENSG00000171487 NLRP5 CLR19.8|MATER|NALP5|PAN11|PYPAF8 NLR family pyrin domain containing 5 protein-coding 230-12 chr2 64823975 64824743 + 0.5 NA Intergenic LTR24C|LTR|ERV1 39272 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 153-80 chr6 81183300 81183781 + 0.5 NA Intergenic Intergenic 569141 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 180.25-80 chrX 54753668 54754218 + 0.5 NA exon (NM_198510, exon 10 of 13) exon (NM_198510, exon 10 of 13) 44312 NM_198510 347365 Hs.454272 NM_198510 ENSG00000102313 ITIH6 ITIH5L|UNQ6369|dJ14O9.1 inter-alpha-trypsin inhibitor heavy chain family member 6 protein-coding 195.5-60 chr6 83664958 83665583 + 0.5 NA intron (NM_001256718, intron 2 of 27) intron (NM_001256718, intron 2 of 27) 43289 NM_001363677 9892 Hs.368046 NM_014841 ENSG00000065609 SNAP91 AP180|CALM synaptosome associated protein 91 protein-coding 223.25-16 chr21 45129449 45130063 + 0.5 NA intron (NR_027674, intron 2 of 11) intron (NR_027674, intron 2 of 11) -22774 NM_001346687 104 Hs.474018 NM_001112 ENSG00000197381 ADARB1 ADAR2|DRABA2|DRADA2|RED1 adenosine deaminase RNA specific B1 protein-coding 185.75-38 chr2 41028097 41028637 + 0.5 NA Intergenic Intergenic -515932 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 227-16 chr4 161185081 161185891 + 0.5 NA Intergenic Intergenic -837247 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 186.75-47 chr20 50165948 50166577 + 0.5 NA Intergenic Intergenic -6308 NR_109943 101927541 Hs.570391 NR_109943 ENSG00000231742 LINC01273 - long intergenic non-protein coding RNA 1273 ncRNA 170.75-31 chr2 53810697 53811237 + 0.5 NA intron (NM_015701, intron 10 of 13) intron (NM_015701, intron 10 of 13) 23923 NM_015701 27248 Hs.438336 NM_015701 ENSG00000068912 ERLEC1 C2orf30|CIM|CL24936|CL25084|HEL117|XTP3-B|XTP3TPB endoplasmic reticulum lectin 1 protein-coding 278.5-19 chr8 114403084 114403721 + 0.5 NA Intergenic L1MB1|LINE|L1 -966463 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 154.5-60 chr3 88821499 88822011 + 0.5 NA Intergenic Intergenic -285866 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 155.75-7 chr1 161815306 161815645 + 0.5 NA intron (NM_007348, intron 7 of 15) AluJr|SINE|Alu 49155 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 186.25-34 chr3 35597858 35598435 + 0.5 NA Intergenic Intergenic -41379 NM_001267616 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 146.25-91 chr7 115699951 115700328 + 0.5 NA Intergenic Intergenic -118698 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 151.75-72 chr4 122350102 122350639 + 0.5 NA intron (NM_015312, intron 78 of 83) intron (NM_015312, intron 78 of 83) -28641 NM_139243 132612 Hs.518957 NM_139243 ENSG00000164113 ADAD1 Tenr adenosine deaminase domain containing 1 protein-coding 189.25-23 chr18 43966465 43967113 + 0.5 NA Intergenic Intergenic 564908 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 157-49 chr2 77570003 77570589 + 0.5 NA Intergenic Intergenic -47863 NM_001282924 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 198-42 chr7 83503478 83504099 + 0.5 NA intron (NM_012431, intron 1 of 16) Tigger3a|DNA|TcMar-Tigger 137643 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 187.5-20 chr16 59264671 59265120 + 0.5 NA Intergenic AluJo|SINE|Alu 490296 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 158-41 chr2 153837596 153838192 + 0.5 NA Intergenic L1MA9|LINE|L1 -34028 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 148.75-107 chr9 10411183 10411607 + 0.5 NA intron (NM_002839, intron 2 of 45) intron (NM_002839, intron 2 of 45) 201607 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 152.75-97 chr8 5330057 5330510 + 0.5 NA Intergenic L1MA7|LINE|L1 -335369 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 147.25-77 chr5 158044865 158045370 + 0.5 NA Intergenic AluJr|SINE|Alu -185972 NM_001195555 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 192.75-67 chr9 29487381 29487823 + 0.5 NA Intergenic L1ME1|LINE|L1 -274001 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 147.25-13 chr10 44844785 44845302 + 0.5 NA intron (NR_033842, intron 2 of 7) intron (NR_033842, intron 2 of 7) -66273 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 193.5-22 chr15 53462557 53463091 + 0.5 NA Intergenic Intergenic 78028 NR_102336 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 155.25-43 chr2 63790391 63790851 + 0.5 NA Intergenic Intergenic -50343 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 169-72 chr8 131027925 131028324 + 0.5 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 12785 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 222.75-37 chr9 6958212 6958938 + 0.5 NA intron (NR_148680, intron 8 of 21) AluSx|SINE|Alu 201225 NR_148679 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 171.25-68 chr9 133607261 133607813 + 0.5 NA Intergenic Intergenic -27291 NM_001080515 642968 Hs.173134 NM_001080515 ENSG00000196990 FAM163B C9orf166 family with sequence similarity 163 member B protein-coding 169.5-7 chr1 186597853 186598258 + 0.5 NA Intergenic L1MA4|LINE|L1 82368 NM_000963 5743 Hs.196384 NM_000963 ENSG00000073756 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 protein-coding 165.75-88 chr6 108911918 108912537 + 0.5 NA intron (NM_001286609, intron 8 of 16) intron (NM_001286609, intron 8 of 16) 11876 NR_104137 101929716 NR_104137 ARMC2-AS1 - ARMC2 antisense RNA 1 ncRNA 176.25-47 chr3 84955887 84956378 + 0.5 NA Intergenic Intergenic -2857 NM_001167675 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 163.5-63 chr20 5825689 5826292 + 0.5 NA intron (NM_001303478, intron 3 of 3) intron (NM_001303478, intron 3 of 3) 75589 NM_001303479 149840 Hs.529340 NM_152504 ENSG00000171984 SHLD1 C20orf196|RINN3 shieldin complex subunit 1 protein-coding 172-55 chr3 121272041 121272503 + 0.5 NA intron (NM_001348343, intron 18 of 27) L1M4c|LINE|L1 222632 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 152-4 chr1 215924867 215925380 + 0.5 NA intron (NM_206933, intron 38 of 71) intron (NM_206933, intron 38 of 71) -147342 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 210-45 chr5 23030414 23030904 + 0.5 NA Intergenic L2|LINE|L2 -177315 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 183.25-2 chr1 75399843 75400405 + 0.5 NA intron (NM_001320285, intron 2 of 25) L1PA17|LINE|L1 210990 NM_001130058 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 290.5-8 chr17 65818880 65819697 + 0.5 NA intron (NR_126542, intron 1 of 5) intron (NR_126542, intron 1 of 5) 7163 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 188.75-67 chr9 74026120 74026674 + 0.5 NA Intergenic Intergenic -345134 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 146.5-71 chr3 187024083 187024541 + 0.5 NA intron (NM_003032, intron 1 of 6) AluSc8|SINE|Alu 2457 NM_003032 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 147.75-78 chr4 64243936 64244387 + 0.5 NA Intergenic Intergenic 165289 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 153.75-42 chr22 34283136 34283739 + 0.5 NA Intergenic L2b|LINE|L2 -360549 NM_001362951 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 214.5-33 chr3 146473486 146474144 + 0.5 NA intron (NM_020359, intron 1 of 8) MER5A|DNA|hAT-Charlie -4514 NM_001199978 57047 Hs.744414 NM_020359 ENSG00000163746 PLSCR2 - phospholipid scramblase 2 protein-coding 201.25-39 chr4 96467741 96468446 + 0.5 NA intron (NR_147149, intron 2 of 3) THE1B-int|LTR|ERVL-MaLR 157390 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 168-25 chr16 23925632 23926281 + 0.5 NA intron (NM_002738, intron 2 of 16) L1PB4|LINE|L1 89973 NM_212535 5579 Hs.460355 NM_002738 ENSG00000166501 PRKCB PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2 protein kinase C beta protein-coding 159.75-42 chr18 4429993 4430454 + 0.5 NA intron (NM_001242761, intron 1 of 11) L1ME3E|LINE|L1 25043 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 258.25-22 chr7 48700686 48701524 + 0.5 NA Intergenic Intergenic -223442 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 170.75-43 chr3 47611205 47611646 + 0.5 NA intron (NM_003074, intron 25 of 27) MER33|DNA|hAT-Charlie -31185 NM_001206945 10675 Hs.45127 NM_006574 ENSG00000114646 CSPG5 NGC chondroitin sulfate proteoglycan 5 protein-coding 176.75-70 chr5 80379931 80380424 + 0.5 NA Intergenic Intergenic -27887 NM_014733 9765 Hs.482660 NM_014733 ENSG00000039319 ZFYVE16 PPP1R69 zinc finger FYVE-type containing 16 protein-coding 185.5-39 chr2 167164533 167165094 + 0.5 NA intron (NM_152381, intron 3 of 10) L1MC1|LINE|L1 -22559 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 182.25-47 chr6 22052313 22052915 + 0.5 NA intron (NR_015410, intron 7 of 11) MIR|SINE|MIR 94579 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 193.25-47 chr4 98777158 98777849 + 0.5 NA Intergenic L1M5|LINE|L1 118601 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 147.25-37 chr15 96924967 96925376 + 0.5 NA Intergenic MER2|DNA|TcMar-Tigger 141736 NR_158221 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 176.75-8 chr1 205174856 205175423 + 0.5 NA intron (NM_199462, intron 2 of 11) AluY|SINE|Alu 36563 NM_015375 25778 Hs.6874 NM_015375 ENSG00000133059 DSTYK CAKUT1|DustyPK|HDCMD38P|RIP5|RIPK5|SPG23 dual serine/threonine and tyrosine protein kinase protein-coding 235-13 chr22 36985186 36985741 + 0.5 NA Intergenic Intergenic 20215 NR_038954 100506241 Hs.640023 NR_038954 ENSG00000215403 LL22NC01-81G9.3 - uncharacterized protein FLJ39582-like ncRNA 165.5-82 chr6 132159640 132160020 + 0.5 NA intron (NR_038981, intron 2 of 2) L1MA4|LINE|L1 25852 NR_038981 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 167.75-36 chr15 74394414 74394819 + 0.5 NA non-coding (NR_146881, exon 4 of 4) non-coding (NR_146881, exon 4 of 4) 15534 NR_146881 105370894 NR_146881 LINC02255 - long intergenic non-protein coding RNA 2255 ncRNA 156.75-21 chr11 45877470 45878039 + 0.5 NA intron (NM_001127457, intron 11 of 11) intron (NM_001127457, intron 11 of 11) -7897 NM_005456 9479 Hs.234249 NM_005456 ENSG00000121653 MAPK8IP1 IB1|JIP-1|JIP1|PRKM8IP mitogen-activated protein kinase 8 interacting protein 1 protein-coding 152.5-64 chr21 31848779 31849238 + 0.5 NA Intergenic LTR16B2|LTR|ERVL -24012 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 156.5-80 chr4 164251348 164251945 + 0.5 NA intron (NM_001166373, intron 1 of 7) intron (NM_001166373, intron 1 of 7) -53935 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 167.75-48 chr2 188769641 188770254 + 0.5 NA intron (NR_161166, intron 1 of 1) intron (NR_161166, intron 1 of 1) 20176 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 154.75-6 chr1 184717047 184717527 + 0.5 NA intron (NM_025191, intron 12 of 19) intron (NM_025191, intron 12 of 19) 37571 NM_025191 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 187.75-36 chr2 74171115 74171647 + 0.5 NA intron (NM_001317112, intron 2 of 4) L1MC5|LINE|L1 6933 NM_001317111 55233 Hs.602092 NM_018221 ENSG00000114978 MOB1A C2orf6|MATS1|MOB1|MOBK1B|MOBKL1B|Mob4B MOB kinase activator 1A protein-coding 195.5-25 chr18 10949455 10950083 + 0.5 NA intron (NM_022068, intron 3 of 51) intron (NM_022068, intron 3 of 51) -190120 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 152.5-74 chr3 152212593 152213137 + 0.5 NA Intergenic Intergenic -7436 NR_136178 101928166 NR_136178 LOC101928166 - uncharacterized LOC101928166 ncRNA 165-69 chr5 92303149 92303678 + 0.5 NA Intergenic MIR|SINE|MIR -920096 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 153.75-99 chr9 80681331 80681658 + 0.5 NA Intergenic L1M5|LINE|L1 706471 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 170.5-44 chr21 24627840 24628358 + 0.5 NA Intergenic MLT1D-int|LTR|ERVL-MaLR 199359 NR_135519 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 172-53 chr3 94579368 94579915 + 0.5 NA Intergenic Intergenic -358622 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 163-10 chr10 65175652 65176289 + 0.5 NA Intergenic L1PA15|LINE|L1 -251452 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 173.25-46 chr3 25729120 25729615 + 0.5 NA intron (NM_018297, intron 9 of 11) intron (NM_018297, intron 9 of 11) 54076 NM_018297 55768 Hs.368960 NM_018297 ENSG00000151092 NGLY1 CDDG|CDG1V|PNG1|PNGase N-glycanase 1 protein-coding 151.5-60 chr22 20754289 20754632 + 0.5 NA intron (NM_058004, intron 23 of 54) L1MD3|LINE|L1 -19653 NM_000185 3053 Hs.474270 NM_000185 ENSG00000099937 SERPIND1 D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10 serpin family D member 1 protein-coding 166.75-49 chr3 2574272 2574885 + 0.5 NA intron (NM_175607, intron 4 of 24) intron (NM_175607, intron 4 of 24) -317637 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 223.5-47 chr8 136121810 136122524 + 0.5 NA Intergenic L1M5|LINE|L1 -408631 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 158.5-22 chr14 49871419 49871841 + 0.5 NA Intergenic FLAM_A|SINE|Alu -8781 NR_027260 378706 NR_027260 ENSG00000274012 RN7SL2 7L1C|7L30.1|7SL1c|RNSRP2 RNA component of signal recognition particle 7SL2 scRNA 191.5-12 chr11 45307890 45308391 + 0.5 NA Intergenic L1ME3C|LINE|L1 -21799 NM_001247987 57586 Hs.436643 NM_020826 ENSG00000019505 SYT13 - synaptotagmin 13 protein-coding 178.75-10 chr10 83531630 83532156 + 0.5 NA Intergenic L1ME3A|LINE|L1 145196 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 149-93 chr7 26918383 26918923 + 0.5 NA Intergenic MIR|SINE|MIR -54063 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 178-10 chr11 38381955 38382370 + 0.5 NA Intergenic Intergenic 264194 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 176.5-22 chr15 79286839 79287359 + 0.5 NA intron (NM_001146341, intron 1 of 1) intron (NM_001146341, intron 1 of 1) -3154 NR_038997 729911 Hs.513931 NR_038997 ENSG00000259234 ANKRD34C-AS1 - ANKRD34C antisense RNA 1 ncRNA 211.25-42 chr6 140096349 140097107 + 0.5 NA Intergenic Intergenic -105467 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 190.5-40 chr3 191687845 191688605 + 0.5 NA Intergenic AluSx1|SINE|Alu 227062 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 148.5-34 chr17 61808158 61808630 + 0.5 NA intron (NM_032043, intron 7 of 19) intron (NM_032043, intron 7 of 19) 55165 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 150.75-84 chr6 134327160 134327629 + 0.5 NA Intergenic L1ME3G|LINE|L1 -9336 NM_001143676 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 277.75-15 chr5 67348035 67348956 + 0.5 NA Intergenic L1M2|LINE|L1 -151696 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 185.25-12 chr12 25929176 25929705 + 0.5 NA Intergenic Intergenic 28145 NR_038227 100506451 Hs.560092 NR_038227 RASSF8-AS1 - RASSF8 antisense RNA 1 ncRNA 149.75-45 chr2 186280051 186280454 + 0.5 NA Intergenic L1PREC2|LINE|L1 -193935 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 155.25-79 chr6 159742019 159742346 + 0.5 NA intron (NM_152857, intron 4 of 5) intron (NM_152857, intron 4 of 5) 14676 NM_001270531 9589 Hs.446091 NM_004906 ENSG00000146457 WTAP Mum2 WT1 associated protein protein-coding 164.25-43 chr2 99594246 99594595 + 0.5 NA intron (NM_001025108, intron 13 of 23) intron (NM_001025108, intron 13 of 23) -104403 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 197.25-16 chr13 113120844 113121577 + 0.5 NA TTS (NM_001267554) TTS (NM_001267554) -1589 NM_000504 2159 Hs.361463 NM_000504 ENSG00000126218 F10 FX|FXA coagulation factor X protein-coding 227.75-36 chr8 124038516 124039120 + 0.5 NA intron (NM_001039112, intron 19 of 40) L1M5|LINE|L1 1964 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 190.75-28 chr17 55687363 55687953 + 0.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR 35206 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 159.5-81 chr6 41875434 41875905 + 0.5 NA intron (NM_018561, intron 2 of 6) intron (NM_018561, intron 2 of 6) -4032 NM_001286554 25862 Hs.593575 NM_018561 ENSG00000164663 USP49 - ubiquitin specific peptidase 49 protein-coding 187.25-23 chr15 26741699 26742358 + 0.5 NA intron (NM_001278631, intron 3 of 9) intron (NM_001278631, intron 3 of 9) -25263 NM_001191320 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 309.25-3 chr10 88313856 88314651 + 0.5 NA intron (NM_001031709, intron 6 of 6) intron (NM_001031709, intron 6 of 6) 269065 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 178.75-47 chr4 18126616 18127234 + 0.5 NA Intergenic Intergenic -105050 NM_001365659 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 168.75-88 chr6 69266137 69266651 + 0.5 NA intron (NM_001704, intron 20 of 31) intron (NM_001704, intron 20 of 31) 530072 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 158.5-23 chr14 56370551 56370915 + 0.5 NA Intergenic L1PA11|LINE|L1 -143598 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 149-82 chr5 96504594 96505095 + 0.5 NA intron (NR_130776, intron 4 of 4) L1ME1|LINE|L1 -71596 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 157.25-41 chr18 45125597 45126063 + 0.5 NA Intergenic MIR3|SINE|MIR -42133 NM_001371319 175.75-40 chr21 28296960 28297565 + 0.5 NA Intergenic L2c|LINE|L2 -68595 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA