1776030 reads; of these: 1776030 (100.00%) were paired; of these: 820180 (46.18%) aligned concordantly 0 times 834393 (46.98%) aligned concordantly exactly 1 time 121457 (6.84%) aligned concordantly >1 times ---- 820180 pairs aligned concordantly 0 times; of these: 158247 (19.29%) aligned discordantly 1 time ---- 661933 pairs aligned 0 times concordantly or discordantly; of these: 1323866 mates make up the pairs; of these: 729159 (55.08%) aligned 0 times 485924 (36.70%) aligned exactly 1 time 108783 (8.22%) aligned >1 times 79.47% overall alignment rate [bam_sort_core] merging from 1 files and 1 in-memory blocks...