Inactive Modules:
  1) slurm

bamFilesList: ['P_P2F3_hg38_sorted.bam', 'P_IgG_hg38_sorted.bam']
binLength: 20
numberOfSamples: 0
blackListFileName: ['/grid/vakoc/data/Patrick/ChIP_seq/hg38.blacklist.bed']
skipZeroOverZero: False
bed_and_bin: False
genomeChunkSize: None
defaultFragmentLength: read length
numberOfProcessors: 1
verbose: False
region: None
bedFile: None
minMappingQuality: None
ignoreDuplicates: False
chrsToSkip: []
stepSize: 20
center_read: True
samFlag_include: None
samFlag_exclude: None
minFragmentLength: 0
maxFragmentLength: 0
zerosToNans: False
smoothLength: 60
save_data: False
out_file_for_raw_data: None
maxPairedFragmentLength: 1000
bamFilesList: ['P_HA_hg38_sorted.bam', 'P_IgG_hg38_sorted.bam']
binLength: 20
numberOfSamples: 0
blackListFileName: ['/grid/vakoc/data/Patrick/ChIP_seq/hg38.blacklist.bed']
skipZeroOverZero: False
bed_and_bin: False
genomeChunkSize: None
defaultFragmentLength: read length
numberOfProcessors: 1
verbose: False
region: None
bedFile: None
minMappingQuality: None
ignoreDuplicates: False
chrsToSkip: []
stepSize: 20
center_read: True
samFlag_include: None
samFlag_exclude: None
minFragmentLength: 0
maxFragmentLength: 0
zerosToNans: False
smoothLength: 60
save_data: False
out_file_for_raw_data: None
maxPairedFragmentLength: 1000
bamFilesList: ['T1P_P2F3_hg38_sorted.bam', 'T1P_IgG_hg38_sorted.bam']
binLength: 20
numberOfSamples: 0
blackListFileName: ['/grid/vakoc/data/Patrick/ChIP_seq/hg38.blacklist.bed']
skipZeroOverZero: False
bed_and_bin: False
genomeChunkSize: None
defaultFragmentLength: read length
numberOfProcessors: 1
verbose: False
region: None
bedFile: None
minMappingQuality: None
ignoreDuplicates: False
chrsToSkip: []
stepSize: 20
center_read: True
samFlag_include: None
samFlag_exclude: None
minFragmentLength: 0
maxFragmentLength: 0
zerosToNans: False
smoothLength: 60
save_data: False
out_file_for_raw_data: None
maxPairedFragmentLength: 1000