Inactive Modules:
  1) slurm

usage: macs2 [-h] [--version]
             {callpeak,bdgpeakcall,bdgbroadcall,bdgcmp,bdgopt,cmbreps,bdgdiff,filterdup,predictd,pileup,randsample,refinepeak}
             ...
macs2: error: unrecognized arguments: –bdg
usage: macs2 [-h] [--version]
             {callpeak,bdgpeakcall,bdgbroadcall,bdgcmp,bdgopt,cmbreps,bdgdiff,filterdup,predictd,pileup,randsample,refinepeak}
             ...
macs2: error: unrecognized arguments: –bdg
usage: macs2 [-h] [--version]
             {callpeak,bdgpeakcall,bdgbroadcall,bdgcmp,bdgopt,cmbreps,bdgdiff,filterdup,predictd,pileup,randsample,refinepeak}
             ...
macs2: error: unrecognized arguments: –bdg
usage: macs2 [-h] [--version]
             {callpeak,bdgpeakcall,bdgbroadcall,bdgcmp,bdgopt,cmbreps,bdgdiff,filterdup,predictd,pileup,randsample,refinepeak}
             ...
macs2: error: unrecognized arguments: –bdg
usage: macs2 [-h] [--version]
             {callpeak,bdgpeakcall,bdgbroadcall,bdgcmp,bdgopt,cmbreps,bdgdiff,filterdup,predictd,pileup,randsample,refinepeak}
             ...
macs2: error: unrecognized arguments: –bdg
usage: macs2 [-h] [--version]
             {callpeak,bdgpeakcall,bdgbroadcall,bdgcmp,bdgopt,cmbreps,bdgdiff,filterdup,predictd,pileup,randsample,refinepeak}
             ...
macs2: error: unrecognized arguments: –bdg
INFO  @ Mon, 24 Feb 2025 14:06:57: 
# Command line: callpeak -t T2P_H3K27ac_hg38_sorted.bam -c T2P_IgG_hg38_sorted.bam -f BAM -g hs -n T2P_H3K27ac_hg38_callpeaks --broad -q 0.01 --bdg
# ARGUMENTS LIST:
# name = T2P_H3K27ac_hg38_callpeaks
# format = BAM
# ChIP-seq file = ['T2P_H3K27ac_hg38_sorted.bam']
# control file = ['T2P_IgG_hg38_sorted.bam']
# effective genome size = 2.70e+09
# band width = 300
# model fold = [5, 50]
# qvalue cutoff for narrow/strong regions = 1.00e-02
# qvalue cutoff for broad/weak regions = 1.00e-01
# The maximum gap between significant sites is assigned as the read length/tag size.
# The minimum length of peaks is assigned as the predicted fragment length "d".
# Larger dataset will be scaled towards smaller dataset.
# Range for calculating regional lambda is: 1000 bps and 10000 bps
# Broad region calling is on
# Paired-End mode is off
 
INFO  @ Mon, 24 Feb 2025 14:06:57: #1 read tag files... 
INFO  @ Mon, 24 Feb 2025 14:06:57: #1 read treatment tags... 
INFO  @ Mon, 24 Feb 2025 14:07:02:  1000000 
INFO  @ Mon, 24 Feb 2025 14:07:07:  2000000 
INFO  @ Mon, 24 Feb 2025 14:07:11:  3000000 
INFO  @ Mon, 24 Feb 2025 14:07:16:  4000000 
INFO  @ Mon, 24 Feb 2025 14:07:21:  5000000 
INFO  @ Mon, 24 Feb 2025 14:07:25:  6000000 
INFO  @ Mon, 24 Feb 2025 14:07:30:  7000000 
INFO  @ Mon, 24 Feb 2025 14:07:35:  8000000 
INFO  @ Mon, 24 Feb 2025 14:07:39:  9000000 
INFO  @ Mon, 24 Feb 2025 14:07:44:  10000000 
INFO  @ Mon, 24 Feb 2025 14:07:49:  11000000 
INFO  @ Mon, 24 Feb 2025 14:07:53:  12000000 
INFO  @ Mon, 24 Feb 2025 14:07:58:  13000000 
INFO  @ Mon, 24 Feb 2025 14:08:03:  14000000 
INFO  @ Mon, 24 Feb 2025 14:08:07:  15000000 
INFO  @ Mon, 24 Feb 2025 14:08:12:  16000000 
INFO  @ Mon, 24 Feb 2025 14:08:17:  17000000 
INFO  @ Mon, 24 Feb 2025 14:08:22:  18000000 
INFO  @ Mon, 24 Feb 2025 14:08:26:  19000000 
INFO  @ Mon, 24 Feb 2025 14:08:31:  20000000 
INFO  @ Mon, 24 Feb 2025 14:08:36:  21000000 
INFO  @ Mon, 24 Feb 2025 14:08:40:  22000000 
INFO  @ Mon, 24 Feb 2025 14:08:45:  23000000 
INFO  @ Mon, 24 Feb 2025 14:08:50:  24000000 
INFO  @ Mon, 24 Feb 2025 14:08:54:  25000000 
INFO  @ Mon, 24 Feb 2025 14:08:59:  26000000 
INFO  @ Mon, 24 Feb 2025 14:09:14: 26428346 reads have been read. 
INFO  @ Mon, 24 Feb 2025 14:09:14: #1.2 read input tags... 
INFO  @ Mon, 24 Feb 2025 14:09:20:  1000000 
INFO  @ Mon, 24 Feb 2025 14:09:25:  2000000 
INFO  @ Mon, 24 Feb 2025 14:09:30:  3000000 
INFO  @ Mon, 24 Feb 2025 14:09:35:  4000000 
INFO  @ Mon, 24 Feb 2025 14:09:40:  5000000