Index of /shares/schatzlab/www-data/pseudohaploid/arabidopsis

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory   -  
[ ]rawcanu.fa.gz 2019-02-25 00:27 61M 
[ ]pseudohap.fa.gz 2019-02-25 00:27 41M 
[ ]pseudohap.fa.stats 2019-02-25 00:28 96  
[ ]rawcanu.fa.stats 2019-02-25 00:28 96  
[TXT]arab.pseudohap.fa.log 2019-02-25 00:28 48  
[ ]arab.chains 2019-02-25 00:29 2.1M 
[TXT]arab.chains.log 2019-02-25 00:29 509  
[ ]canu.spec 2019-02-25 00:29 92  
[ ]run_canu.sh 2019-02-25 00:29 380  
Pseudohaploid Arabidopsis Col-0 x Cvi-0 Results


Raw Reads are from:
https://www.ebi.ac.uk/ena/data/view/SRX1715706

Reads were assembled using run_canu.sh: rawcanu.fa.gz
This created 2074 contigs, with a total span of 214700023 and n50=350182

Pseudohaploid assembly created using: create_pseudohaploid.sh rawcanu.fa pseudohaploid
Results are in: pseudohaploid.fa.gz This reduced the assembly to 505 contigs with a total span of 143490505 and n50=950253